Psyllid ID: psy4577

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKKKEVVVTMFAL
Secondary Structure (PSIPRED)
cEEEcccccEEEEEEccccEEEEEccccccccccccccccccEEEEEcccccccEEEEEEccccccEEEEEEccccEEEEEccccccccccHHcccccccEEEEccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHcccccccEEEEEEcccccccccccccEEEEEEEEEccccccEEEEEEEEcccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccEEEccccccEEEEEEccccccEEEEEEccccEEEEEcccccccccEEEccccccccccEEEEEEcccccEEEccccEEEEEcccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEcccccEEEEEEHHcccccccccHccccccEEEEEEccccccEcEccccccccEEEEEEccccEEEEEEccHHHcccccccccccccccEEEcccccEEEEccEcccccccHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEccccccccccccEEEEEEEEEcccccccEEEEEEEEcccccccccHHHccHccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEEcccccEEEEEcccccccccccccccccEEEEEccccEEEEEEccccccEEEEcccccEEEEEEccccccccccccHHHHEcccccEEEEEEEcccccccccccHHHHHHHccEEEEEEHcc
Coil and Loop (DISEMBL)
vqwsphnetilassgtdrrlhvwdlskigeeqstedaedgppellfihgghtakisdfswnpnepwvicsvseDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHalewpsltaqwlpdvTRVINEEYKIWKKNTPFLYDLVMTHalewpsltaqwlpdvtrpegkdysiHRLILGTHTSDEQNHLLIAsvqlpnedaqfdasnydtdkgdfggfgsvsGKIEIEIKINhegevnrarympqnpcviatktpssdvlvfdytkhpskpdpngechpdlrlrghqkegyglswnpslngyllsasddhticlwdinatpkenrvidaktifTGHTAVVELELIERLTkkadpvctlekaKKKKEVVVTMFAL
Flexible Loop (DISEMBL)
vqwsphnetilassgtdrrlhVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVIneeykiwkkNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKhpskpdpngechPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIerltkkadpvctlekakkkkeVVVTMFAL
Low Complexity Region (SEG)
VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLekakkkkevvvTMFAL
Disordered region (IsUnstruct)
*******************LHVWDL******************LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLP*********NYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT***********************EGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKA*****VVV*****
Disordered Region (DISOPRED)
VQWSPHNETILASSGTDRRLHVWDLSKIGE*********GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNE***********DKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK****GECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKKKEVVVTMFAL
Disordered Region (DISEMBL)
VQWSPHNETILASSGTDRRLHVWDLSKIGE*********GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKKKEVVVTMFAL
Disordered Region (DISPRO)
VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKKKEVVVTMFAL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKKKEVVVTMFAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
Q9W7I5	425	Histone-binding protein R	yes	N/A	0.546	0.494	0.912	1e-119
Q60972	425	Histone-binding protein R	yes	N/A	0.546	0.494	0.912	1e-119
Q09028	425	Histone-binding protein R	yes	N/A	0.546	0.494	0.912	1e-119
Q3MHL3	425	Histone-binding protein R	yes	N/A	0.546	0.494	0.912	1e-119
Q5RF92	425	Histone-binding protein R	yes	N/A	0.546	0.494	0.907	1e-118
Q5M7K4	425	Histone-binding protein R	yes	N/A	0.546	0.494	0.907	1e-118
Q24572	430	Probable histone-binding	yes	N/A	0.523	0.467	0.917	1e-118
Q6INH0	425	Histone-binding protein R	N/A	N/A	0.546	0.494	0.903	1e-118
Q6P3H7	424	Histone-binding protein R	yes	N/A	0.546	0.495	0.889	1e-116
O93377	425	Histone-binding protein R	N/A	N/A	0.546	0.494	0.884	1e-115

>sp|Q9W7I5|RBBP4_CHICK Histone-binding protein RBBP4 OS=Gallus gallus GN=RBBP4 PE=1 SV=3

 Score =  428 bits (1101), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 198/217 (91%), Positives = 215/217 (99%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct: 15  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 75  EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct: 135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct: 195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.
Gallus gallus (taxid: 9031)

>sp|Q60972|RBBP4_MOUSE Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=5

 Score =  428 bits (1100), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 198/217 (91%), Positives = 215/217 (99%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct: 15  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 75  EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct: 135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct: 195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Mus musculus (taxid: 10090)

>sp|Q09028|RBBP4_HUMAN Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3

 Score =  428 bits (1100), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 198/217 (91%), Positives = 215/217 (99%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct: 15  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 75  EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct: 135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct: 195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Homo sapiens (taxid: 9606)

>sp|Q3MHL3|RBBP4_BOVIN Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3

 Score =  428 bits (1100), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 198/217 (91%), Positives = 215/217 (99%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct: 15  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 75  EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct: 135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct: 195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Bos taurus (taxid: 9913)

>sp|Q5RF92|RBBP4_PONAB Histone-binding protein RBBP4 OS=Pongo abelii GN=RBBP4 PE=2 SV=3

 Score =  426 bits (1095), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 197/217 (90%), Positives = 215/217 (99%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEE+KIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct: 15  RVINEEHKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 75  EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct: 135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct: 195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Pongo abelii (taxid: 9601)

>sp|Q5M7K4|RBBP4_XENTR Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3

 Score =  426 bits (1094), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 197/217 (90%), Positives = 214/217 (98%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRP+GKD+SIHRL+LGTHTSD
Sbjct: 15  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDFSIHRLVLGTHTSD 74

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 75  EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G LL
Sbjct: 135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGNLL 194

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct: 195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus tropicalis (taxid: 8364)

>sp|Q24572|CAF1_DROME Probable histone-binding protein Caf1 OS=Drosophila melanogaster GN=Caf1 PE=1 SV=1

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/217 (91%), Positives = 210/217 (96%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT+ +GKDYS+HRLILGTHTSD
Sbjct: 19  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 78

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHLLIASVQLP+EDAQFD S+YD +KG+FGGFGSV GKIEIEIKINHEGEVNRARYMP
Sbjct: 79  EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMP 138

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QN CVIATKTPSSDVLVFDYTKHPSKP+P+GEC PDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 139 QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDINATPKE+RVIDAK IFTGHTAVVE
Sbjct: 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the nucleosome remodeling and deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; the nucleosome remodeling factor (NURF) complex, which catalyzes ATP-dependent nucleosome sliding and facilitates transcription of chromatin; and the polycomb group (PcG) repressor complex ESC-E(Z), which promotes repression of homeotic genes during development. Also required for transcriptional repression of E2F target genes by E2f2 and Rbf or Rbf2.

Drosophila melanogaster (taxid: 7227)

>sp|Q6INH0|RBP4B_XENLA Histone-binding protein RBBP4-B OS=Xenopus laevis GN=rbbp4-b PE=1 SV=3

 Score =  423 bits (1088), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 196/217 (90%), Positives = 213/217 (98%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRP+GKD+SIHRL+LGTHTSD
Sbjct: 15  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDFSIHRLVLGTHTSD 74

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 75  EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPC+IATKTPS DVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G LL
Sbjct: 135 QNPCIIATKTPSCDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGNLL 194

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct: 195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus laevis (taxid: 8355)

>sp|Q6P3H7|RBBP4_DANRE Histone-binding protein RBBP4 OS=Danio rerio GN=rbbp4 PE=2 SV=3

 Score =  419 bits (1078), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/217 (88%), Positives = 210/217 (96%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+S+HRL+LGTHTSD
Sbjct: 15  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSVHRLVLGTHTSD 74

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 75  EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPC+IATKTP+SDVLVFDYTKHPSKPDP+GEC PDLRLRGHQKEGYGLSWNP+L   LL
Sbjct: 135 QNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEGYGLSWNPNLRSCLL 194

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDI+  PKE +++DAKTIFTGHTAVVE
Sbjct: 195 SASDDHTICLWDISTVPKEGKIVDAKTIFTGHTAVVE 231

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Danio rerio (taxid: 7955)

>sp|O93377|RBP4A_XENLA Histone-binding protein RBBP4-A OS=Xenopus laevis GN=rbbp4-a PE=1 SV=3

 Score =  416 bits (1070), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/217 (88%), Positives = 212/217 (97%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWL DVTRP+GKD+SIHRL+LGTHTSD
Sbjct: 15  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLSDVTRPDGKDFSIHRLVLGTHTSD 74

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKI H+GEVNRARYMP
Sbjct: 75  EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKITHDGEVNRARYMP 134

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPC+IATKTP+SDVLVFDYTKHPSKPDP+GEC+P+LRLRGHQKEGYGLSWNP+L+G LL
Sbjct: 135 QNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECNPNLRLRGHQKEGYGLSWNPNLSGNLL 194

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct: 195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
332022144	478	Putative histone-binding protein Caf1 [A	0.565	0.453	0.967	1e-123
307206335	428	Probable histone-binding protein Caf1 [H	0.565	0.507	0.972	1e-123
345483539	427	PREDICTED: probable histone-binding prot	0.565	0.508	0.972	1e-123
156553332	431	PREDICTED: probable histone-binding prot	0.565	0.503	0.972	1e-123
322785127	421	hypothetical protein SINV_06743 [Solenop	0.565	0.515	0.967	1e-122
91089627	427	PREDICTED: similar to retinoblastoma-bin	0.565	0.508	0.967	1e-122
332372836	433	unknown [Dendroctonus ponderosae]	0.565	0.501	0.963	1e-122
242011942	427	retinoblastoma-binding protein, putative	0.565	0.508	0.963	1e-122
66534191	427	PREDICTED: probable histone-binding prot	0.565	0.508	0.963	1e-122
321465178	427	hypothetical protein DAPPUDRAFT_306287 [	0.565	0.508	0.944	1e-121

>gi|332022144|gb|EGI62466.1| Putative histone-binding protein Caf1 [Acromyrmex echinatior]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/217 (96%), Positives = 216/217 (99%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           R+INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD
Sbjct: 68  RIINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 127

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHLLIASVQLPNEDAQFDAS+YD +KG+FGGFGSVSGKIEIEIKINHEGEVNRAR+MP
Sbjct: 128 EQNHLLIASVQLPNEDAQFDASHYDNEKGEFGGFGSVSGKIEIEIKINHEGEVNRARFMP 187

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 188 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPNLNGYLL 247

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE
Sbjct: 248 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 284

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206335|gb|EFN84392.1| Probable histone-binding protein Caf1 [Harpegnathos saltator]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/217 (97%), Positives = 216/217 (99%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYS+HRLILGTHTSD
Sbjct: 17  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSVHRLILGTHTSD 76

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHLLIASVQLPNEDAQFDAS+YD +KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 77  EQNHLLIASVQLPNEDAQFDASHYDNEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 136

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 137 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPNLNGYLL 196

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE
Sbjct: 197 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 233

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483539|ref|XP_003424838.1| PREDICTED: probable histone-binding protein Caf1 isoform 2 [Nasonia vitripennis]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/217 (97%), Positives = 216/217 (99%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDY+IHRLILGTHTSD
Sbjct: 16  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYTIHRLILGTHTSD 75

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHLLIASVQLPNEDAQFDAS+YD +KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 76  EQNHLLIASVQLPNEDAQFDASHYDNEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 135

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 136 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPNLNGYLL 195

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE
Sbjct: 196 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 232

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156553332|ref|XP_001602921.1| PREDICTED: probable histone-binding protein Caf1 isoform 1 [Nasonia vitripennis]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/217 (97%), Positives = 216/217 (99%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDY+IHRLILGTHTSD
Sbjct: 20  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYTIHRLILGTHTSD 79

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHLLIASVQLPNEDAQFDAS+YD +KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 80  EQNHLLIASVQLPNEDAQFDASHYDNEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 139

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 140 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPNLNGYLL 199

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE
Sbjct: 200 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 236

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785127|gb|EFZ11851.1| hypothetical protein SINV_06743 [Solenopsis invicta]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/217 (96%), Positives = 216/217 (99%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           R+INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD
Sbjct: 10  RIINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 69

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHLLIASVQLPNEDAQFDAS+YD +KG+FGGFGSVSGKIEIEIKINHEGEVNRAR+MP
Sbjct: 70  EQNHLLIASVQLPNEDAQFDASHYDNEKGEFGGFGSVSGKIEIEIKINHEGEVNRARFMP 129

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 130 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPNLNGYLL 189

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE
Sbjct: 190 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 226

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089627|ref|XP_973479.1| PREDICTED: similar to retinoblastoma-binding protein 4 (rbbp4) [Tribolium castaneum] gi|270012612|gb|EFA09060.1| hypothetical protein TcasGA2_TC006775 [Tribolium castaneum]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/217 (96%), Positives = 216/217 (99%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRLILGTHTSD
Sbjct: 17  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDHSIHRLILGTHTSD 76

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHLLIASVQLPNEDAQFDAS+YD +KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 77  EQNHLLIASVQLPNEDAQFDASHYDNEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 136

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 137 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPNLNGYLL 196

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDINATPKENR+IDAKTIFTGHTAVVE
Sbjct: 197 SASDDHTICLWDINATPKENRIIDAKTIFTGHTAVVE 233

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372836|gb|AEE61560.1| unknown [Dendroctonus ponderosae]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/217 (96%), Positives = 216/217 (99%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+S+HRLILGTHTSD
Sbjct: 20  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDHSLHRLILGTHTSD 79

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHLLIASVQLPNEDAQFDAS+Y+ +KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 80  EQNHLLIASVQLPNEDAQFDASHYENEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 139

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 140 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPNLNGYLL 199

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE
Sbjct: 200 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 236

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011942|ref|XP_002426702.1| retinoblastoma-binding protein, putative [Pediculus humanus corporis] gi|242011944|ref|XP_002426703.1| retinoblastoma-binding protein, putative [Pediculus humanus corporis] gi|212510873|gb|EEB13964.1| retinoblastoma-binding protein, putative [Pediculus humanus corporis] gi|212510874|gb|EEB13965.1| retinoblastoma-binding protein, putative [Pediculus humanus corporis]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/217 (96%), Positives = 215/217 (99%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWL DVTRPEGKDYSIHRLILGTHTSD
Sbjct: 16  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLIDVTRPEGKDYSIHRLILGTHTSD 75

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHLLIASVQLPNEDAQFDAS+YD ++G+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 76  EQNHLLIASVQLPNEDAQFDASHYDNERGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 135

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPCVIATKTPSSDVLVFDYTKHPSKPDP+GECHPDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 136 QNPCVIATKTPSSDVLVFDYTKHPSKPDPSGECHPDLRLRGHQKEGYGLSWNPNLNGYLL 195

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE
Sbjct: 196 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 232

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66534191|ref|XP_624580.1| PREDICTED: probable histone-binding protein Caf1 [Apis mellifera] gi|340711092|ref|XP_003394115.1| PREDICTED: probable histone-binding protein Caf1-like [Bombus terrestris] gi|350405600|ref|XP_003487490.1| PREDICTED: probable histone-binding protein Caf1-like [Bombus impatiens] gi|383865389|ref|XP_003708156.1| PREDICTED: probable histone-binding protein Caf1-like [Megachile rotundata]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/217 (96%), Positives = 214/217 (98%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYS+HRLILGTHTSD
Sbjct: 16  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSVHRLILGTHTSD 75

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHLLIASVQLPNEDAQFDAS+YD +KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 76  EQNHLLIASVQLPNEDAQFDASHYDNEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 135

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC PDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 136 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 195

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDINA PKENRVIDAKTIFTGHTAVVE
Sbjct: 196 SASDDHTICLWDINAPPKENRVIDAKTIFTGHTAVVE 232

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321465178|gb|EFX76181.1| hypothetical protein DAPPUDRAFT_306287 [Daphnia pulex]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/217 (94%), Positives = 216/217 (99%)

Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYS+HRLILGTHTSD
Sbjct: 16  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSVHRLILGTHTSD 75

Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHLLIASVQLPNEDAQFDAS+YD DKG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 76  EQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 135

Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPCVIATKTPSSDVLVFDYTKHPS+PDP+GECHPDLRLRGHQKEGYGLSWNP+LNG+LL
Sbjct: 136 QNPCVIATKTPSSDVLVFDYTKHPSRPDPSGECHPDLRLRGHQKEGYGLSWNPNLNGHLL 195

Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDINA+P+ENRV+DAKT+FTGHTAVVE
Sbjct: 196 SASDDHTICLWDINASPRENRVLDAKTVFTGHTAVVE 232

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
UNIPROTKB|F2Z4M0	425	RBBP4 "Histone-binding protein	0.565	0.510	0.912	2.9e-112
UNIPROTKB|Q9W7I5	425	RBBP4 "Histone-binding protein	0.565	0.510	0.912	2.9e-112
UNIPROTKB|Q3MHL3	425	RBBP4 "Histone-binding protein	0.565	0.510	0.912	2.9e-112
UNIPROTKB|E2QXR8	425	RBBP4 "Uncharacterized protein	0.565	0.510	0.912	2.9e-112
UNIPROTKB|Q09028	425	RBBP4 "Histone-binding protein	0.565	0.510	0.912	2.9e-112
MGI|MGI:1194912	425	Rbbp4 "retinoblastoma binding	0.565	0.510	0.912	2.9e-112
RGD|1593768	425	Rbbp4 "retinoblastoma binding	0.565	0.510	0.912	2.9e-112
UNIPROTKB|Q5RF92	425	RBBP4 "Histone-binding protein	0.565	0.510	0.907	9.7e-112
UNIPROTKB|Q5M7K4	425	rbbp4 "Histone-binding protein	0.565	0.510	0.907	1.6e-111
FB|FBgn0263979	430	Caf1 "Chromatin assembly facto	0.565	0.504	0.917	4.2e-111

UNIPROTKB|F2Z4M0 RBBP4 "Histone-binding protein RBBP4" [Gallus gallus (taxid:9031)]

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 198/217 (91%), Positives = 215/217 (99%)

Query:   135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
             RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:   195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
             EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct:    75 EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query:   255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
             QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct:   135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194

Query:   315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
             SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct:   195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

UNIPROTKB|Q9W7I5 RBBP4 "Histone-binding protein RBBP4" [Gallus gallus (taxid:9031)]

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 198/217 (91%), Positives = 215/217 (99%)

Query:   135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
             RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:   195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
             EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct:    75 EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query:   255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
             QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct:   135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194

Query:   315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
             SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct:   195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0031497 "chromatin assembly" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|Q3MHL3 RBBP4 "Histone-binding protein RBBP4" [Bos taurus (taxid:9913)]

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 198/217 (91%), Positives = 215/217 (99%)

Query:   135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
             RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:   195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
             EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct:    75 EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query:   255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
             QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct:   135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194

Query:   315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
             SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct:   195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2QXR8 RBBP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 198/217 (91%), Positives = 215/217 (99%)

Query:   135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
             RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:   195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
             EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct:    75 EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query:   255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
             QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct:   135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194

Query:   315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
             SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct:   195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

UNIPROTKB|Q09028 RBBP4 "Histone-binding protein RBBP4" [Homo sapiens (taxid:9606)]

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 198/217 (91%), Positives = 215/217 (99%)

Query:   135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
             RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:   195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
             EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct:    75 EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query:   255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
             QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct:   135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194

Query:   315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
             SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct:   195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016581 "NuRD complex" evidence=NAS;IDA

GO:0016589 "NURF complex" evidence=IDA

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0033186 "CAF-1 complex" evidence=IDA

GO:0031497 "chromatin assembly" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0008094 "DNA-dependent ATPase activity" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006334 "nucleosome assembly" evidence=TAS

GO:0034080 "CENP-A containing nucleosome assembly at centromere" evidence=TAS

GO:0016580 "Sin3 complex" evidence=NAS

GO:0042393 "histone binding" evidence=NAS

GO:0042826 "histone deacetylase binding" evidence=IPI

MGI|MGI:1194912 Rbbp4 "retinoblastoma binding protein 4" [Mus musculus (taxid:10090)]

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 198/217 (91%), Positives = 215/217 (99%)

Query:   135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
             RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:   195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
             EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct:    75 EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query:   255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
             QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct:   135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194

Query:   315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
             SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct:   195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006260 "DNA replication" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=ISO;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016581 "NuRD complex" evidence=ISO;IDA

GO:0016589 "NURF complex" evidence=ISO

GO:0031497 "chromatin assembly" evidence=ISO

GO:0033186 "CAF-1 complex" evidence=ISO

GO:0035098 "ESC/E(Z) complex" evidence=ISO;IDA

GO:0042826 "histone deacetylase binding" evidence=ISO

RGD|1593768 Rbbp4 "retinoblastoma binding protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 198/217 (91%), Positives = 215/217 (99%)

Query:   135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
             RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:   195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
             EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct:    75 EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query:   255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
             QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct:   135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194

Query:   315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
             SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct:   195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

GO:0005634 "nucleus" evidence=ISO

GO:0006338 "chromatin remodeling" evidence=IEA;ISO

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA;ISO

GO:0016581 "NuRD complex" evidence=IEA;ISO

GO:0016589 "NURF complex" evidence=IEA;ISO

GO:0031497 "chromatin assembly" evidence=IEA;ISO

GO:0033186 "CAF-1 complex" evidence=IEA;ISO

GO:0035098 "ESC/E(Z) complex" evidence=IEA;ISO

GO:0042826 "histone deacetylase binding" evidence=IEA;ISO

UNIPROTKB|Q5RF92 RBBP4 "Histone-binding protein RBBP4" [Pongo abelii (taxid:9601)]

 Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
 Identities = 197/217 (90%), Positives = 215/217 (99%)

Query:   135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
             RVINEE+KIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct:    15 RVINEEHKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74

Query:   195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
             EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct:    75 EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query:   255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
             QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct:   135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194

Query:   315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
             SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct:   195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|Q5M7K4 rbbp4 "Histone-binding protein RBBP4" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
 Identities = 197/217 (90%), Positives = 214/217 (98%)

Query:   135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
             RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRP+GKD+SIHRL+LGTHTSD
Sbjct:    15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDFSIHRLVLGTHTSD 74

Query:   195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
             EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct:    75 EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134

Query:   255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
             QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G LL
Sbjct:   135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGNLL 194

Query:   315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
             SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct:   195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

FB|FBgn0263979 Caf1 "Chromatin assembly factor 1 subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 199/217 (91%), Positives = 210/217 (96%)

Query:   135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
             RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT+ +GKDYS+HRLILGTHTSD
Sbjct:    19 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 78

Query:   195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
             EQNHLLIASVQLP+EDAQFD S+YD +KG+FGGFGSV GKIEIEIKINHEGEVNRARYMP
Sbjct:    79 EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMP 138

Query:   255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
             QN CVIATKTPSSDVLVFDYTKHPSKP+P+GEC PDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct:   139 QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198

Query:   315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
             SASDDHTICLWDINATPKE+RVIDAK IFTGHTAVVE
Sbjct:   199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235

GO:0016584 "nucleosome positioning" evidence=IDA

GO:0042826 "histone deacetylase binding" evidence=ISS;IDA

GO:0031497 "chromatin assembly" evidence=ISS;IDA

GO:0033186 "CAF-1 complex" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0042393 "histone binding" evidence=IDA;NAS;TAS

GO:0016590 "ACF complex" evidence=IDA

GO:0006281 "DNA repair" evidence=TAS

GO:0006334 "nucleosome assembly" evidence=NAS;IDA

GO:0016573 "histone acetylation" evidence=ISS;IDA

GO:0016589 "NURF complex" evidence=NAS;TAS;IPI

GO:0035035 "histone acetyltransferase binding" evidence=ISS;IPI

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042766 "nucleosome mobilization" evidence=IDA

GO:0006335 "DNA replication-dependent nucleosome assembly" evidence=NAS

GO:0003682 "chromatin binding" evidence=NAS

GO:0006342 "chromatin silencing" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=IDA

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

GO:0046976 "histone methyltransferase activity (H3-K27 specific)" evidence=IC

GO:0046974 "histone methyltransferase activity (H3-K9 specific)" evidence=IC

GO:0016571 "histone methylation" evidence=IDA

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0007307 "eggshell chorion gene amplification" evidence=IC

GO:0031523 "Myb complex" evidence=IDA

GO:0005667 "transcription factor complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0016581 "NuRD complex" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0000910 "cytokinesis" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0031491 "nucleosome binding" evidence=IDA

GO:0042054 "histone methyltransferase activity" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0007517 "muscle organ development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0070822 "Sin3-type complex" evidence=IDA

GO:0007379 "segment specification" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0061085 "regulation of histone H3-K27 methylation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CS36	HAT2_CRYNJ	No assigned EC number	0.5475	0.5625	0.4965	yes	N/A
Q09028	RBBP4_HUMAN	No assigned EC number	0.9124	0.5468	0.4941	yes	N/A
Q9W7I5	RBBP4_CHICK	No assigned EC number	0.9124	0.5468	0.4941	yes	N/A
Q6INH0	RBP4B_XENLA	No assigned EC number	0.9032	0.5468	0.4941	N/A	N/A
O22467	MSI1_ARATH	No assigned EC number	0.6559	0.5625	0.5094	yes	N/A
Q5M7K4	RBBP4_XENTR	No assigned EC number	0.9078	0.5468	0.4941	yes	N/A
Q3MHL3	RBBP4_BOVIN	No assigned EC number	0.9124	0.5468	0.4941	yes	N/A
Q60972	RBBP4_MOUSE	No assigned EC number	0.9124	0.5468	0.4941	yes	N/A
Q54SD4	RBBD_DICDI	No assigned EC number	0.6192	0.5651	0.5130	yes	N/A
Q6P3H7	RBBP4_DANRE	No assigned EC number	0.8894	0.5468	0.4952	yes	N/A
Q2UA71	HAT2_ASPOR	No assigned EC number	0.5067	0.5546	0.4885	yes	N/A
Q24572	CAF1_DROME	No assigned EC number	0.9170	0.5234	0.4674	yes	N/A
Q10G81	MSI1_ORYSJ	No assigned EC number	0.6513	0.5625	0.5046	yes	N/A
Q5RF92	RBBP4_PONAB	No assigned EC number	0.9078	0.5468	0.4941	yes	N/A
P90916	LIN53_CAEEL	No assigned EC number	0.6497	0.5598	0.5155	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	384
pfam12265	73	pfam12265, CAF1C_H4-bd, Histone-binding protein RB	2e-33
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	4e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.002
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.002
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.003
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.004

>gnl|CDD|221499 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit C of CAF1 complex

 Score =  118 bits (299), Expect = 2e-33
 Identities = 42/73 (57%), Positives = 56/73 (76%), Gaps = 1/73 (1%)

Query: 138 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD-EQ 196
           NEEY++WKKN PFLYD++ THALEWPSL+  WLPD+ + + +     RL+LGT TS  EQ
Sbjct: 1   NEEYELWKKNDPFLYDMLHTHALEWPSLSFDWLPDLLKGDNRYPHTQRLLLGTQTSGQEQ 60

Query: 197 NHLLIASVQLPNE 209
           N+LL+A V LP++
Sbjct: 61  NYLLVAKVSLPSK 73

The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six. Length = 73

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 23/111 (20%)

Query: 242 NHEGEVNRARYMPQNPCVIATKTPSSD--VLVFDYTKHPSKPDPNGECHPDLRLRGHQKE 299
            H G V           + +    SSD  + ++D           GEC     L GH   
Sbjct: 49  GHTGPVRDVAASADGTYLASG---SSDKTIRLWDLET--------GECV--RTLTGHTSY 95

Query: 300 GYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 350
              ++++P     L S+S D TI +WD+             T   GHT  V
Sbjct: 96  VSSVAFSPD-GRILSSSSRDKTIKVWDVETG-------KCLTTLRGHTDWV 138

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 23/110 (20%)

Query: 243 HEGEVNRARYMPQNPCVIATKTPSSD--VLVFDYTKHPSKPDPNGECHPDLRLRGHQKEG 300
           H GEVN   + P    ++++   SSD  + ++D +         G+C     LRGH+   
Sbjct: 176 HTGEVNSVAFSPDGEKLLSS---SSDGTIKLWDLST--------GKCL--GTLRGHENGV 222

Query: 301 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 350
             ++++P     L S S+D TI +WD+  T +  + +      +GHT  V
Sbjct: 223 NSVAFSPD-GYLLASGSEDGTIRVWDLR-TGECVQTL------SGHTNSV 264

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWD 326
           L+GH      ++++P     L S SDD T+ +WD
Sbjct: 7   LKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWD 326
           L+GH      ++++P    YL S SDD TI LWD
Sbjct: 8   LKGHTGPVTSVAFSPDGK-YLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 19/108 (17%)

Query: 243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG 302
           H G V    + P    ++AT +    + V+D                   L+GH      
Sbjct: 8   HTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLE----------TGELLRTLKGHTGPVRD 56

Query: 303 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 350
           ++ +     YL S S D TI LWD+  T +  R        TGHT+ V
Sbjct: 57  VAASADGT-YLASGSSDKTIRLWDLE-TGECVR------TLTGHTSYV 96

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 19/108 (17%)

Query: 243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG 302
           H   V+   + P    ++++ +    + V+D           G+C     LRGH      
Sbjct: 92  HTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDV--------ETGKCL--TTLRGHTDWVNS 140

Query: 303 LSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 350
           ++++P    ++ S+S D TI LWD+  T K           TGHT  V
Sbjct: 141 VAFSPD-GTFVASSSQDGTIKLWDLR-TGKCVAT------LTGHTGEV 180

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 14/79 (17%)

Query: 1   VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
           + +SP  + + + S  D  + +WDL                 + L    GHT  +S  ++
Sbjct: 161 LAFSPDGKLLASGSSLDGTIKLWDLRT--------------GKPLSTLAGHTDPVSSLAF 206

Query: 61  NPNEPWVICSVSEDNIMQI 79
           +P+   +I S S D  +++
Sbjct: 207 SPDGGLLIASGSSDGTIRL 225

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 1   VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
           +Q++P    ILAS   D  + VW++     ++S ++ +D       I  GH  KIS   W
Sbjct: 80  LQFNPCFSEILASGSEDLTIRVWEIPH--NDESVKEIKDP----QCILKGHKKKISIIDW 133

Query: 61  NPNEPWVICSVSEDNIMQI 79
           NP   +++CS   D+ + I
Sbjct: 134 NPMNYYIMCSSGFDSFVNI 152

Length = 568

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 54/335 (16%), Positives = 115/335 (34%), Gaps = 53/335 (15%)

Query: 1   VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
           + +SP  E +L S  +D  + +WDL            ++G   +  + G H + +S  + 
Sbjct: 71  IAFSPDGE-LLLSGSSDGTIKLWDL------------DNGEKLIKSLEGLHDSSVSKLAL 117

Query: 61  -NPNEPWVICSVSE-DNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTH 118
            +P+   ++ + S  D  +++  +                +  +  + ++  +  L  + 
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDL------------STPGKLIRTLEGHSESVTSLAFSP 165

Query: 119 ALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD-----V 173
             +  +  +     +        K+W   T      +  H    P  +  + PD      
Sbjct: 166 DGKLLASGSSLDGTI--------KLWDLRTGKPLSTLAGH--TDPVSSLAFSPDGGLLIA 215

Query: 174 TRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG 233
           +        +  L  G       +    + V   + D    AS   +  G    +   S 
Sbjct: 216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASG--SSDGTIRLWDLRSS 273

Query: 234 KIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL 293
              +     H   V    + P +  ++A+ +    V ++D           G+    L L
Sbjct: 274 SSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLE--------TGKLLSSLTL 324

Query: 294 RGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN 328
           +GH+     LS++P  +  +   SDD TI LWD+ 
Sbjct: 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 16/75 (21%)

Query: 1   VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
           V  S      LAS  +D+ + +WDL                 E +    GHT+ +S  ++
Sbjct: 57  VAASADGTY-LASGSSDKTIRLWDLET--------------GECVRTLTGHTSYVSSVAF 101

Query: 61  NPNEPWVICSVSEDN 75
           +P+   +  S S D 
Sbjct: 102 SPDGRILSSS-SRDK 115

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 350
           L+GH      ++++P     L + S D TI +WD+          +      GHT  V
Sbjct: 5   LKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETG-------ELLRTLKGHTGPV 54

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 0.002
 Identities = 56/333 (16%), Positives = 112/333 (33%), Gaps = 66/333 (19%)

Query: 7   NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 66
           N  +LASS  D  + +WDLS  G+   T +             GH+  ++  +++P+   
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLE-------------GHSESVTSLAFSPDGKL 169

Query: 67  VICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLT 126
           +    S D  +                        K+W   T      +  H    P  +
Sbjct: 170 LASGSSLDGTI------------------------KLWDLRTGKPLSTLAGH--TDPVSS 203

Query: 127 AQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD--VTRPEGK 179
             + PD   +I     +   ++W  +T  L  L  T +    S+ + + PD  +      
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKL--LRSTLSGHSDSVVSSFSPDGSLLASGSS 261

Query: 180 DYSIHRLILGTHTSDEQ----NHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI 235
           D +I    L + +S  +    +   + SV    +     + + D     +         +
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW--DLETGKLL 319

Query: 236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG 295
                  HEG V+   + P    +++  +    + ++D                 L+   
Sbjct: 320 SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP-----------LKTLE 368

Query: 296 HQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN 328
                  +S++P     + S S D T+ LWD++
Sbjct: 369 GHSNVLSVSFSPDGR-VVSSGSTDGTVRLWDLS 400

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 292 RLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 350
            L GH  E   ++++P     LLS+S D TI LWD++                GH   V
Sbjct: 172 TLTGHTGEVNSVAFSPDGEK-LLSSSSDGTIKLWDLSTG-------KCLGTLRGHENGV 222

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 16/79 (20%)

Query: 1   VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
           V +SP    +LAS   D  + VWDL                 E +    GHT  ++  +W
Sbjct: 225 VAFSPDGY-LLASGSEDGTIRVWDLRT--------------GECVQTLSGHTNSVTSLAW 269

Query: 61  NPNEPWVICSVSEDNIMQI 79
           +P+   +  S S D  ++I
Sbjct: 270 SPDGKRL-ASGSADGTIRI 287

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0265|consensus	338		100.0
KOG0315|consensus	311		100.0
KOG0273|consensus	524		100.0
KOG0272|consensus	459		100.0
KOG0286|consensus	343		100.0
KOG0271|consensus	480		100.0
KOG0263|consensus	707		100.0
KOG0295|consensus	406		100.0
KOG0273|consensus	524		100.0
KOG0318|consensus	603		100.0
KOG0282|consensus	503		100.0
KOG0645|consensus	312		100.0
KOG0279|consensus	315		100.0
KOG0279|consensus	315		100.0
KOG0293|consensus	519		100.0
KOG0263|consensus	707		100.0
KOG0277|consensus	311		100.0
KOG0296|consensus	399		100.0
KOG0284|consensus	464		100.0
KOG0315|consensus	311		100.0
KOG0292|consensus	1202		99.98
KOG0286|consensus	343		99.98
KOG1407|consensus	313		99.98
KOG0319|consensus	775		99.97
KOG0266|consensus	456		99.97
KOG0264|consensus	422		99.97
KOG0319|consensus	775		99.97
KOG0313|consensus	423		99.97
KOG0291|consensus	893		99.97
KOG0291|consensus	893		99.97
KOG0277|consensus	311		99.97
KOG0264|consensus	422		99.97
KOG0285|consensus	460		99.97
KOG0647|consensus	347		99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0643|consensus	327		99.96
KOG0276|consensus	794		99.96
KOG0318|consensus	603		99.96
KOG0645|consensus	312		99.96
KOG0276|consensus	794		99.96
KOG0281|consensus	499		99.96
KOG0285|consensus	460		99.96
KOG1332|consensus	299		99.96
KOG0284|consensus	464		99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0640|consensus	430		99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0316|consensus	307		99.96
KOG0269|consensus	839		99.96
KOG0293|consensus	519		99.95
KOG0282|consensus	503		99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0265|consensus	338		99.95
KOG0266|consensus	456		99.95
KOG0295|consensus	406		99.95
KOG0306|consensus	888		99.95
KOG0313|consensus	423		99.95
KOG0283|consensus	712		99.95
KOG0308|consensus	735		99.95
KOG0306|consensus	888		99.94
KOG0772|consensus	641		99.94
KOG0973|consensus	942		99.94
KOG0973|consensus	942		99.94
KOG0310|consensus	487		99.94
KOG0288|consensus	459		99.94
KOG1446|consensus	311		99.94
KOG0275|consensus	508		99.94
KOG0302|consensus	440		99.94
PTZ00421	493	coronin; Provisional	99.94
KOG2445|consensus	361		99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
KOG0278|consensus	334		99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0772|consensus	641		99.93
KOG0292|consensus	1202		99.93
KOG0310|consensus	487		99.93
KOG0299|consensus	479		99.93
KOG0316|consensus	307		99.92
KOG0268|consensus	433		99.92
KOG4283|consensus	397		99.92
KOG1036|consensus	323		99.92
KOG2096|consensus	420		99.92
KOG0288|consensus	459		99.92
KOG0300|consensus	481		99.92
KOG0305|consensus	484		99.92
KOG0641|consensus	350		99.92
KOG0294|consensus	362		99.92
KOG0267|consensus	825		99.92
KOG1539|consensus	910		99.91
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.91
KOG0274|consensus	537		99.91
KOG0321|consensus	720		99.91
KOG0307|consensus	1049		99.91
KOG0281|consensus	499		99.91
KOG2919|consensus	406		99.91
KOG1273|consensus	405		99.91
KOG0646|consensus	476		99.91
KOG1407|consensus	313		99.91
KOG0289|consensus	506		99.9
KOG1063|consensus	764		99.9
KOG0296|consensus	399		99.9
KOG1007|consensus	370		99.9
KOG0302|consensus	440		99.89
KOG0275|consensus	508		99.89
KOG1408|consensus	1080		99.89
KOG0283|consensus	712		99.88
KOG1445|consensus	1012		99.88
KOG4378|consensus	673		99.88
KOG4328|consensus	498		99.88
KOG0650|consensus	733		99.88
KOG0270|consensus	463		99.88
KOG2096|consensus	420		99.88
KOG0268|consensus	433		99.87
KOG0301|consensus	745		99.87
KOG0641|consensus	350		99.87
KOG0300|consensus	481		99.87
KOG0305|consensus	484		99.87
KOG0270|consensus	463		99.87
KOG0269|consensus	839		99.87
KOG0308|consensus	735		99.87
KOG2106|consensus	626		99.87
KOG0640|consensus	430		99.87
KOG1063|consensus	764		99.87
KOG1332|consensus	299		99.86
KOG0642|consensus	577		99.86
KOG0290|consensus	364		99.86
KOG1009|consensus	434		99.85
KOG4283|consensus	397		99.85
KOG0274|consensus	537		99.85
KOG0278|consensus	334		99.85
KOG0643|consensus	327		99.84
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.84
KOG2106|consensus	626		99.84
KOG1446|consensus	311		99.84
KOG1036|consensus	323		99.84
KOG1274|consensus	933		99.84
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.83
KOG0321|consensus	720		99.83
KOG0647|consensus	347		99.82
KOG1539|consensus	910		99.82
KOG0299|consensus	479		99.82
KOG2055|consensus	514		99.82
KOG1034|consensus	385		99.82
KOG0267|consensus	825		99.81
KOG0301|consensus	745		99.81
KOG1408|consensus	1080		99.81
KOG0289|consensus	506		99.81
KOG1188|consensus	376		99.81
KOG1587|consensus	555		99.8
KOG1538|consensus	1081		99.8
KOG0294|consensus	362		99.79
KOG2048|consensus	691		99.79
KOG2445|consensus	361		99.79
KOG1524|consensus	737		99.78
KOG0639|consensus	705		99.78
KOG0307|consensus	1049		99.78
KOG0650|consensus	733		99.78
KOG4378|consensus	673		99.77
KOG2055|consensus	514		99.77
KOG0644|consensus	1113		99.77
KOG0290|consensus	364		99.77
KOG0771|consensus	398		99.77
KOG1034|consensus	385		99.76
KOG1274|consensus	933		99.76
KOG0639|consensus	705		99.76
KOG0303|consensus	472		99.76
KOG4328|consensus	498		99.76
KOG1007|consensus	370		99.74
KOG2048|consensus	691		99.73
KOG0322|consensus	323		99.72
KOG1587|consensus	555		99.71
KOG1009|consensus	434		99.7
KOG0649|consensus	325		99.7
KOG0303|consensus	472		99.7
KOG4227|consensus	609		99.69
KOG0322|consensus	323		99.69
KOG1963|consensus	792		99.68
KOG1963|consensus	792		99.67
KOG0646|consensus	476		99.67
KOG1517|consensus	1387		99.67
KOG1523|consensus	361		99.66
KOG1310|consensus	758		99.66
KOG1445|consensus	1012		99.66
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
KOG1310|consensus	758		99.63
KOG2919|consensus	406		99.63
KOG0642|consensus	577		99.63
KOG4227|consensus	609		99.61
PRK11028	330	6-phosphogluconolactonase; Provisional	99.61
KOG0771|consensus	398		99.61
KOG1538|consensus	1081		99.6
KOG1273|consensus	405		99.59
KOG2394|consensus	636		99.58
KOG1334|consensus	559		99.56
KOG1524|consensus	737		99.56
COG2319	466	FOG: WD40 repeat [General function prediction only	99.56
COG2319	466	FOG: WD40 repeat [General function prediction only	99.56
KOG2110|consensus	391		99.55
KOG2139|consensus	445		99.55
KOG4497|consensus	447		99.54
PRK01742	429	tolB translocation protein TolB; Provisional	99.54
PRK11028	330	6-phosphogluconolactonase; Provisional	99.54
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.54
PRK03629	429	tolB translocation protein TolB; Provisional	99.52
KOG2111|consensus	346		99.51
KOG2139|consensus	445		99.47
KOG1188|consensus	376		99.45
KOG3881|consensus	412		99.45
KOG2394|consensus	636		99.44
KOG2110|consensus	391		99.44
KOG1240|consensus	1431		99.43
PRK04922	433	tolB translocation protein TolB; Provisional	99.42
PRK02889	427	tolB translocation protein TolB; Provisional	99.41
KOG0649|consensus	325		99.41
PRK02889	427	tolB translocation protein TolB; Provisional	99.4
KOG1354|consensus	433		99.4
KOG1272|consensus	545		99.37
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.36
KOG1334|consensus	559		99.36
KOG1523|consensus	361		99.35
PRK05137	435	tolB translocation protein TolB; Provisional	99.35
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.34
KOG1517|consensus	1387		99.33
PRK05137	435	tolB translocation protein TolB; Provisional	99.33
PRK04922	433	tolB translocation protein TolB; Provisional	99.32
PRK03629	429	tolB translocation protein TolB; Provisional	99.31
KOG4497|consensus	447		99.27
KOG2041|consensus	1189		99.27
KOG1240|consensus	1431		99.26
KOG0974|consensus	967		99.25
KOG0644|consensus	1113		99.24
KOG2321|consensus	703		99.24
KOG1272|consensus	545		99.22
PRK04792	448	tolB translocation protein TolB; Provisional	99.21
KOG0280|consensus	339		99.19
KOG1409|consensus	404		99.19
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.18
KOG2315|consensus	566		99.18
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.18
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.17
PRK00178	430	tolB translocation protein TolB; Provisional	99.15
KOG2321|consensus	703		99.15
KOG2111|consensus	346		99.14
PRK01029	428	tolB translocation protein TolB; Provisional	99.11
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.09
KOG1064|consensus	2439		99.09
KOG4547|consensus	541		99.08
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.07
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.05
KOG3914|consensus	390		99.05
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.04
KOG0280|consensus	339		99.04
KOG3881|consensus	412		99.02
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.02
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.02
PRK01029	428	tolB translocation protein TolB; Provisional	99.01
KOG4532|consensus	344		99.0
PRK00178	430	tolB translocation protein TolB; Provisional	98.97
PRK04792	448	tolB translocation protein TolB; Provisional	98.96
KOG2314|consensus	698		98.93
KOG1354|consensus	433		98.92
KOG4547|consensus	541		98.9
KOG0309|consensus	1081		98.87
KOG0974|consensus	967		98.85
KOG1409|consensus	404		98.84
KOG2315|consensus	566		98.84
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.84
KOG4714|consensus	319		98.81
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.72
KOG2695|consensus	425		98.71
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.68
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.67
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.65
KOG2314|consensus	698		98.63
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.63
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.61
KOG1064|consensus	2439		98.6
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.59
COG4946	668	Uncharacterized protein related to the periplasmic	98.59
PRK04043	419	tolB translocation protein TolB; Provisional	98.57
KOG2114|consensus	933		98.55
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.53
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.51
KOG0882|consensus	558		98.5
KOG4190|consensus	1034		98.47
KOG0309|consensus	1081		98.46
KOG1645|consensus	463		98.43
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.39
KOG1008|consensus	783		98.39
KOG3617|consensus	1416		98.33
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.33
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.32
KOG1912|consensus	1062		98.28
KOG1912|consensus	1062		98.27
KOG4190|consensus	1034		98.26
KOG2041|consensus	1189		98.24
KOG4714|consensus	319		98.2
KOG4532|consensus	344		98.18
KOG2695|consensus	425		98.12
KOG3914|consensus	390		98.07
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.01
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.96
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.96
KOG1920|consensus	1265		97.95
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.89
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.88
PF12265	74	CAF1C_H4-bd: Histone-binding protein RBBP4 or subu	97.88
COG4946	668	Uncharacterized protein related to the periplasmic	97.86
KOG4640|consensus	665		97.77
KOG4640|consensus	665		97.75
KOG1645|consensus	463		97.62
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.51
PRK04043	419	tolB translocation protein TolB; Provisional	97.5
KOG2066|consensus	846		97.39
KOG3617|consensus	1416		97.38
KOG1008|consensus	783		97.37
KOG1920|consensus	1265		97.36
KOG2079|consensus	1206		97.35
PRK02888	635	nitrous-oxide reductase; Validated	97.35
KOG3621|consensus	726		97.25
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.23
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.2
KOG1275|consensus	1118		97.18
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.1
KOG1275|consensus	1118		97.1
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.02
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.0
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.99
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.95
KOG2114|consensus	933		96.78
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.73
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.51
KOG2066|consensus	846		96.48
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.33
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.25
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.97
KOG2395|consensus	644		95.93
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.88
KOG3621|consensus	726		95.86
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.86
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.78
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.73
KOG1832|consensus	1516		95.62
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.52
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.21
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.08
KOG0882|consensus	558		94.97
KOG2444|consensus	238		94.94
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.91
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.88
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.74
KOG4499|consensus	310		94.73
KOG1832|consensus	1516		94.66
KOG2079|consensus	1206		94.2
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.04
PRK13616	591	lipoprotein LpqB; Provisional	93.96
PRK02888	635	nitrous-oxide reductase; Validated	93.94
PRK13616	591	lipoprotein LpqB; Provisional	93.93
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.85
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.8
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.3
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.11
KOG2444|consensus	238		93.0
COG3391	381	Uncharacterized conserved protein [Function unknow	92.95
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.81
KOG2395|consensus	644		92.73
KOG1916|consensus	1283		92.47
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	92.17
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.23
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	90.98
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	90.83
KOG2377|consensus	657		90.72
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.49
KOG2247|consensus	615		90.15
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.14
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.52
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.5
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	89.34
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.84
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	88.51
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.41
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	88.3
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.54
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.02
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	86.42
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	86.26
COG3391	381	Uncharacterized conserved protein [Function unknow	86.24
KOG3630|consensus	1405		86.1
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	85.53
KOG2377|consensus	657		84.92
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	83.78
KOG1916|consensus	1283		83.57
KOG4649|consensus	354		83.4
KOG3630|consensus	1405		83.38
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	83.15
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	83.09
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	82.59
KOG2280|consensus	829		82.41
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	81.95
COG5167	776	VID27 Protein involved in vacuole import and degra	81.89
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	80.12

>KOG0271|consensus

Probab=100.00  E-value=9.5e-45  Score=287.56  Aligned_cols=315  Identities=19%  Similarity=0.259  Sum_probs=224.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. .||||+.|.++|+||+.+              ....++.+||..-|.|++|+|||+ .||||+.||+|++|
T Consensus       121 ~~fsp~g~-~l~tGsGD~TvR~WD~~T--------------eTp~~t~KgH~~WVlcvawsPDgk-~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  121 VQFSPTGS-RLVTGSGDTTVRLWDLDT--------------ETPLFTCKGHKNWVLCVAWSPDGK-KIASGSKDGSIRLW  184 (480)
T ss_pred             EEecCCCc-eEEecCCCceEEeeccCC--------------CCcceeecCCccEEEEEEECCCcc-hhhccccCCeEEEe
Confidence            47999997 699999999999999987              366888999999999999999999 88999999999999


Q ss_pred             EcccCCCccch------------------------hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceee
Q psy4577          81 SVVCVEPFDDA------------------------VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRV  136 (384)
Q Consensus        81 d~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  136 (384)
                      |..+++.+...                        ......++.+++|+.........+.+|  ..+|+|+.|-.+|-..
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH--T~~VTCvrwGG~gliy  262 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH--TASVTCVRWGGEGLIY  262 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC--ccceEEEEEcCCceEE
Confidence            99887432111                        112234788999999887776788888  7889999998776433


Q ss_pred             e---cceeeeeccccccccceeecccccccceeeeeccCCC-----CCCCCccceeEEEEeeeccCCCCeEEEEEeecCC
Q psy4577         137 I---NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT-----RPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPN  208 (384)
Q Consensus       137 ~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  208 (384)
                      -   |++|++|+...+.+...+.+|..-...+  ..+.+..     .......... .. ..+.....++-.+    +..
T Consensus       263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~l--alsTdy~LRtgaf~~t~~~~~~-~s-e~~~~Al~rY~~~----~~~  334 (480)
T KOG0271|consen  263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHL--ALSTDYVLRTGAFDHTGRKPKS-FS-EEQKKALERYEAV----LKD  334 (480)
T ss_pred             ecCCCceEEEEEccchhHHHhhcccchheeee--eccchhhhhccccccccccCCC-hH-HHHHHHHHHHHHh----hcc
Confidence            3   9999999998888877777764322111  1111100     0000000000 00 0000000000000    001


Q ss_pred             CCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcc
Q psy4577         209 EDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECH  288 (384)
Q Consensus       209 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  288 (384)
                      .+..+....-|...-.|..   ...+.++..+.+|..-|+.+.|||++. ++|++|.|..|++||.+        +|.. 
T Consensus       335 ~~erlVSgsDd~tlflW~p---~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~--------tGk~-  401 (480)
T KOG0271|consen  335 SGERLVSGSDDFTLFLWNP---FKSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGR--------TGKF-  401 (480)
T ss_pred             CcceeEEecCCceEEEecc---cccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCC--------Ccch-
Confidence            1111111122222222211   112334667789999999999999995 99999999999999987        5654 


Q ss_pred             ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         289 PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       289 ~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                       +.+|+||-++|+.++|+.|. ++|+|||.|.++++||+++.+       ....|.||...|.+++|+|||...+
T Consensus       402 -lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkK-------l~~DLpGh~DEVf~vDwspDG~rV~  467 (480)
T KOG0271|consen  402 -LASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKK-------LKQDLPGHADEVFAVDWSPDGQRVA  467 (480)
T ss_pred             -hhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeee-------ecccCCCCCceEEEEEecCCCceee
Confidence             55899999999999999997 899999999999999999998       8899999999999999999999833

>KOG0272|consensus

Probab=100.00  E-value=4e-41  Score=270.13  Aligned_cols=263  Identities=16%  Similarity=0.217  Sum_probs=212.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCC-CcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE-PWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~-~~~l~s~s~D~~i~v   79 (384)
                      +.||+++. .|||||.+|.++||+...              ...+.++.||++.|.++.|+|.. ...+|||+.||++++
T Consensus       181 ~~fS~ds~-~laT~swsG~~kvW~~~~--------------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl  245 (459)
T KOG0272|consen  181 CSFSRDSK-HLATGSWSGLVKVWSVPQ--------------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKL  245 (459)
T ss_pred             eEeecCCC-eEEEeecCCceeEeecCC--------------cceeEEEeccccceeeEEEccCCCccceeeeccCCceee
Confidence            46899997 799999999999999976              47788899999999999999983 436899999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |++++.                        ...+.+.+|  ...|..++|+|+|+++.    |.+-++||+.+.....+.
T Consensus       246 w~~~~e------------------------~~l~~l~gH--~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q  299 (459)
T KOG0272|consen  246 WKLSQE------------------------TPLQDLEGH--LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ  299 (459)
T ss_pred             eccCCC------------------------cchhhhhcc--hhhheeeeecCCCceeeecccccchhhcccccchhhHhh
Confidence            998763                        122456677  57899999999999998    888999999887665544


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      .+|...                                       +.++.+.+++..+.....|.-.+.|+.   ..++ 
T Consensus       300 EGHs~~---------------------------------------v~~iaf~~DGSL~~tGGlD~~~RvWDl---Rtgr-  336 (459)
T KOG0272|consen  300 EGHSKG---------------------------------------VFSIAFQPDGSLAATGGLDSLGRVWDL---RTGR-  336 (459)
T ss_pred             cccccc---------------------------------------cceeEecCCCceeeccCccchhheeec---ccCc-
Confidence            444433                                       334444444444455555554444422   1222 


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      .+-.+.+|..+|.+|+|+|+| +.|||||.|++++|||++..          ..+.++.+|..-|+.|+|+|...++|+|
T Consensus       337 ~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r----------~~ly~ipAH~nlVS~Vk~~p~~g~fL~T  405 (459)
T KOG0272|consen  337 CIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMR----------SELYTIPAHSNLVSQVKYSPQEGYFLVT  405 (459)
T ss_pred             EEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccc----------ccceecccccchhhheEecccCCeEEEE
Confidence            355667899999999999999 69999999999999999732          2377899999999999999954489999


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      +|.|++++||..++.+       +++++.||.+.|.+++.+|++..++++
T Consensus       406 asyD~t~kiWs~~~~~-------~~ksLaGHe~kV~s~Dis~d~~~i~t~  448 (459)
T KOG0272|consen  406 ASYDNTVKIWSTRTWS-------PLKSLAGHEGKVISLDISPDSQAIATS  448 (459)
T ss_pred             cccCcceeeecCCCcc-------cchhhcCCccceEEEEeccCCceEEEe
Confidence            9999999999999999       999999999999999999999876554

>KOG0265|consensus

Probab=100.00  E-value=1.5e-34  Score=222.73  Aligned_cols=267  Identities=14%  Similarity=0.192  Sum_probs=197.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+|. +||||+.|..|.+|++...             .+-..++.||+++|..+.|.+++. .|+|+|.|++++.|
T Consensus        53 ~~F~P~gs-~~aSgG~Dr~I~LWnv~gd-------------ceN~~~lkgHsgAVM~l~~~~d~s-~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   53 IKFHPDGS-CFASGGSDRAIVLWNVYGD-------------CENFWVLKGHSGAVMELHGMRDGS-HILSCGTDKTVRGW  117 (338)
T ss_pred             EEECCCCC-eEeecCCcceEEEEecccc-------------ccceeeeccccceeEeeeeccCCC-EEEEecCCceEEEE
Confidence            47999997 8999999999999997641             244566789999999999999999 77899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~  155 (384)
                      |+++++.             ++..+.+             ..-|.++.-+.-|..++     |+++++||++......++
T Consensus       118 D~~tG~~-------------~rk~k~h-------------~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~  171 (338)
T KOG0265|consen  118 DAETGKR-------------IRKHKGH-------------TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF  171 (338)
T ss_pred             eccccee-------------eehhccc-------------cceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence            9999733             2222222             22344555333444554     999999999875553322


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                              .+...+.++.+.....++.....|...+.|    +....-
T Consensus       172 ----------------------------------------~~kyqltAv~f~d~s~qv~sggIdn~ikvW----d~r~~d  207 (338)
T KOG0265|consen  172 ----------------------------------------ENKYQLTAVGFKDTSDQVISGGIDNDIKVW----DLRKND  207 (338)
T ss_pred             ----------------------------------------ccceeEEEEEecccccceeeccccCceeee----ccccCc
Confidence                                                    112234444444444444444555444443    222233


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC----ceEEEEeCCCCCC
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK----EGYGLSWNPSLNG  311 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~----~i~~~~~s~~~~~  311 (384)
                      ....+.+|.++|+.+..+|+|. ++.+-+.|.++++||+++.-.    ..  ..+..+.||..    ....++|+|++ .
T Consensus       208 ~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p----~~--R~v~if~g~~hnfeknlL~cswsp~~-~  279 (338)
T KOG0265|consen  208 GLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAP----SQ--RCVKIFQGHIHNFEKNLLKCSWSPNG-T  279 (338)
T ss_pred             ceEEeecccCceeeEEeccCCC-ccccccccceEEEEEecccCC----CC--ceEEEeecchhhhhhhcceeeccCCC-C
Confidence            3677889999999999999995 999999999999999985321    11  12556777643    45678999998 7


Q ss_pred             eEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         312 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       312 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      .+.+|+.|..+++||..+..       .+..+.||.+.|++++|+|.++.+.++.+
T Consensus       280 ~i~ags~dr~vyvwd~~~r~-------~lyklpGh~gsvn~~~Fhp~e~iils~~s  328 (338)
T KOG0265|consen  280 KITAGSADRFVYVWDTTSRR-------ILYKLPGHYGSVNEVDFHPTEPIILSCSS  328 (338)
T ss_pred             ccccccccceEEEeeccccc-------EEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence            99999999999999999987       99999999999999999999998776544

>KOG0315|consensus

Probab=100.00  E-value=1.6e-34  Score=216.89  Aligned_cols=257  Identities=19%  Similarity=0.295  Sum_probs=188.5

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      ...|+++ .||+|+. -.||+||+....            +..+.++.+|+..|+++.|..+|+ .++|||.||++||||
T Consensus        47 eiTpdk~-~LAaa~~-qhvRlyD~~S~n------------p~Pv~t~e~h~kNVtaVgF~~dgr-WMyTgseDgt~kIWd  111 (311)
T KOG0315|consen   47 EITPDKK-DLAAAGN-QHVRLYDLNSNN------------PNPVATFEGHTKNVTAVGFQCDGR-WMYTGSEDGTVKIWD  111 (311)
T ss_pred             EEcCCcc-hhhhccC-CeeEEEEccCCC------------CCceeEEeccCCceEEEEEeecCe-EEEecCCCceEEEEe
Confidence            4678887 6888875 469999998743            457888899999999999999999 678999999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~  157 (384)
                      ++.....             +.+            .  +..+|.++..+|+...++    +|.|++||+....+...+..
T Consensus       112 lR~~~~q-------------R~~------------~--~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP  164 (311)
T KOG0315|consen  112 LRSLSCQ-------------RNY------------Q--HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP  164 (311)
T ss_pred             ccCcccc-------------hhc------------c--CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC
Confidence            9763110             111            1  246789999999988777    89999999976644333222


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC--CCCce
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS--VSGKI  235 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~  235 (384)
                      ... .+..++...++                                     +..+.+....+++..|.....  ...-.
T Consensus       165 e~~-~~i~sl~v~~d-------------------------------------gsml~a~nnkG~cyvW~l~~~~~~s~l~  206 (311)
T KOG0315|consen  165 EDD-TSIQSLTVMPD-------------------------------------GSMLAAANNKGNCYVWRLLNHQTASELE  206 (311)
T ss_pred             CCC-cceeeEEEcCC-------------------------------------CcEEEEecCCccEEEEEccCCCccccce
Confidence            211 11222222222                                     222222222222222211111  11233


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      ++.++..|++.+..+.+||+++ +||++|.|.+++||+..         +..+....+.+|+.++...+||.|| .||+|
T Consensus       207 P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~---------~~~kle~~l~gh~rWvWdc~FS~dg-~YlvT  275 (311)
T KOG0315|consen  207 PVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTD---------DFFKLELVLTGHQRWVWDCAFSADG-EYLVT  275 (311)
T ss_pred             EhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecC---------CceeeEEEeecCCceEEeeeeccCc-cEEEe
Confidence            4666789999999999999996 99999999999999984         3355567899999999999999999 79999


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIE  356 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  356 (384)
                      |+.|+.+++||+..++       .++.+.+|-.+-.|++.+
T Consensus       276 assd~~~rlW~~~~~k-------~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  276 ASSDHTARLWDLSAGK-------EVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             cCCCCceeecccccCc-------eeeecCCcccccEEEEee
Confidence            9999999999999998       889999988877777654

>KOG0273|consensus

Probab=100.00  E-value=2e-34  Score=234.87  Aligned_cols=270  Identities=20%  Similarity=0.336  Sum_probs=201.2

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCc-CcccccCCCCCCCCeeEEEecc----cccceEEEEEccCCCcEEEEEecCC
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKI-GEEQSTEDAEDGPPELLFIHGG----HTAKISDFSWNPNEPWVICSVSEDN   75 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~g----h~~~V~~l~~~~~~~~~l~s~s~D~   75 (384)
                      .+|+|-...+||+|+.|-+.++|++... .......     ..+......+    -+..|++|+|+.+|. +||+|+.||
T Consensus       184 ~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~-----~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-~LatG~~~G  257 (524)
T KOG0273|consen  184 CAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQL-----VLRHCIREGGKSVPSNKDVTSLDWNNDGT-LLATGSEDG  257 (524)
T ss_pred             EecCchhhhhhhccCCccceeeeeehhhccccchhh-----hhhhhhhhhcccCCccCCcceEEecCCCC-eEEEeecCc
Confidence            3799988778999999999999998741 1000000     0000000111    235799999999999 999999999


Q ss_pred             eEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccc
Q psy4577          76 IMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFL  151 (384)
Q Consensus        76 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~  151 (384)
                      .+|+|+....                         +..++..|  ..+|.++.|+..|++++    |++..+||..++..
T Consensus       258 ~~riw~~~G~-------------------------l~~tl~~H--kgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~  310 (524)
T KOG0273|consen  258 EARIWNKDGN-------------------------LISTLGQH--KGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV  310 (524)
T ss_pred             EEEEEecCch-------------------------hhhhhhcc--CCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence            9999988663                         21233344  78999999999999998    99999999988777


Q ss_pred             cceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC
Q psy4577         152 YDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV  231 (384)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  231 (384)
                      +..+.-+...  .+.++|.........               .....+.+..+.                          
T Consensus       311 ~q~f~~~s~~--~lDVdW~~~~~F~ts---------------~td~~i~V~kv~--------------------------  347 (524)
T KOG0273|consen  311 KQQFEFHSAP--ALDVDWQSNDEFATS---------------STDGCIHVCKVG--------------------------  347 (524)
T ss_pred             EEeeeeccCC--ccceEEecCceEeec---------------CCCceEEEEEec--------------------------
Confidence            6655444332  345666544321100               012223333333                          


Q ss_pred             CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCC-
Q psy4577         232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLN-  310 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-  310 (384)
                       ..-+...+++|.+.|+++.|+|.+. +|+++|+|++++||.+.        ..  .....+.+|...|+.+.|+|+|+ 
T Consensus       348 -~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~--------~~--~~~~~l~~Hskei~t~~wsp~g~v  415 (524)
T KOG0273|consen  348 -EDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMG--------QS--NSVHDLQAHSKEIYTIKWSPTGPV  415 (524)
T ss_pred             -CCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecC--------CC--cchhhhhhhccceeeEeecCCCCc
Confidence             2334677788999999999999995 99999999999999975        22  23457899999999999999764 


Q ss_pred             -------CeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         311 -------GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       311 -------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                             ..|++++.|++|++||+..+.       ++.+|..|+.+|++|+|+|++..+++.
T Consensus       416 ~~n~~~~~~l~sas~dstV~lwdv~~gv-------~i~~f~kH~~pVysvafS~~g~ylAsG  470 (524)
T KOG0273|consen  416 TSNPNMNLMLASASFDSTVKLWDVESGV-------PIHTLMKHQEPVYSVAFSPNGRYLASG  470 (524)
T ss_pred             cCCCcCCceEEEeecCCeEEEEEccCCc-------eeEeeccCCCceEEEEecCCCcEEEec
Confidence                   379999999999999999999       999999999999999999999987765

>KOG0272|consensus

Probab=100.00  E-value=6.5e-36  Score=240.31  Aligned_cols=231  Identities=20%  Similarity=0.290  Sum_probs=188.2

Q ss_pred             CCCCCC-CCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPH-NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~-~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      +.|+|. ...-||||+.||++++|++++              ..++..+.||...|..++|+|+|+ +|+|+|.|.+-++
T Consensus       223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~--------------e~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRl  287 (459)
T KOG0272|consen  223 AVFHPVDSDLNLATASADGTVKLWKLSQ--------------ETPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRL  287 (459)
T ss_pred             EEEccCCCccceeeeccCCceeeeccCC--------------CcchhhhhcchhhheeeeecCCCc-eeeecccccchhh
Confidence            469998 344699999999999999987              366788899999999999999999 8889999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      ||+.++.                      ..+  ...||  ...|.+++|.|||..++    |..-++||+++....-++
T Consensus       288 WD~~tk~----------------------ElL--~QEGH--s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L  341 (459)
T KOG0272|consen  288 WDLETKS----------------------ELL--LQEGH--SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL  341 (459)
T ss_pred             cccccch----------------------hhH--hhccc--ccccceeEecCCCceeeccCccchhheeecccCcEEEEe
Confidence            9998751                      111  34466  67799999999999988    777799999998876555


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      .+|..                                       .|.++.|+|++-.+.....|..++.|+.    ..+-
T Consensus       342 ~gH~k---------------------------------------~I~~V~fsPNGy~lATgs~Dnt~kVWDL----R~r~  378 (459)
T KOG0272|consen  342 AGHIK---------------------------------------EILSVAFSPNGYHLATGSSDNTCKVWDL----RMRS  378 (459)
T ss_pred             ccccc---------------------------------------ceeeEeECCCceEEeecCCCCcEEEeee----cccc
Confidence            55433                                       3555556666666666666666665533    3344


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      .+....+|..-|+.|+|+|...++|+|++.|++++||..+          ...++.++.||.+.|.+++.+|++ .+++|
T Consensus       379 ~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~----------~~~~~ksLaGHe~kV~s~Dis~d~-~~i~t  447 (459)
T KOG0272|consen  379 ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR----------TWSPLKSLAGHEGKVISLDISPDS-QAIAT  447 (459)
T ss_pred             cceecccccchhhheEecccCCeEEEEcccCcceeeecCC----------CcccchhhcCCccceEEEEeccCC-ceEEE
Confidence            4777789999999999999655799999999999999964          456788999999999999999998 79999


Q ss_pred             eeCCCcEEEEe
Q psy4577         316 ASDDHTICLWD  326 (384)
Q Consensus       316 ~s~Dg~i~iwd  326 (384)
                      ++.|.++++|.
T Consensus       448 ~s~DRT~KLW~  458 (459)
T KOG0272|consen  448 SSFDRTIKLWR  458 (459)
T ss_pred             eccCceeeecc
Confidence            99999999995

>KOG0286|consensus

Probab=100.00  E-value=3.7e-33  Score=214.38  Aligned_cols=266  Identities=15%  Similarity=0.198  Sum_probs=205.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      +.|++|.+ .|+++|.||.+.|||.-+..              ....++-....|..++|+|.|+ ++|+|+.|+.+.|+
T Consensus        61 ~~ws~Dsr-~ivSaSqDGklIvWDs~Ttn--------------K~haipl~s~WVMtCA~sPSg~-~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   61 MDWSTDSR-RIVSASQDGKLIVWDSFTTN--------------KVHAIPLPSSWVMTCAYSPSGN-FVACGGLDNKCSIY  124 (343)
T ss_pred             eEecCCcC-eEEeeccCCeEEEEEccccc--------------ceeEEecCceeEEEEEECCCCC-eEEecCcCceeEEE
Confidence            46999997 69999999999999987622              2223333456899999999999 89999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceeec
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~  157 (384)
                      ++.+.+.                  .......+.+.+|  ...+.++.|.+|+..+-   |.+..+||+.+......+.+
T Consensus       125 ~ls~~d~------------------~g~~~v~r~l~gH--tgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G  184 (343)
T KOG0286|consen  125 PLSTRDA------------------EGNVRVSRELAGH--TGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG  184 (343)
T ss_pred             ecccccc------------------cccceeeeeecCc--cceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC
Confidence            9975310                  0011122456677  67788999999777665   89999999988877666665


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCC-CCcccccccccCcCCCCCCccCCCCcee
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPN-EDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      |..+                                       +.++++++ +...+.....|...++|+.    .....
T Consensus       185 H~gD---------------------------------------V~slsl~p~~~ntFvSg~cD~~aklWD~----R~~~c  221 (343)
T KOG0286|consen  185 HTGD---------------------------------------VMSLSLSPSDGNTFVSGGCDKSAKLWDV----RSGQC  221 (343)
T ss_pred             Cccc---------------------------------------EEEEecCCCCCCeEEecccccceeeeec----cCcce
Confidence            5443                                       55566666 4555566666776666533    23345


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ...+.+|+..|++|+|.|+|. -|++|++|+++|+||+|.        .....+..-..-..+|++++||..| ++|.+|
T Consensus       222 ~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRa--------D~~~a~ys~~~~~~gitSv~FS~SG-RlLfag  291 (343)
T KOG0286|consen  222 VQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRA--------DQELAVYSHDSIICGITSVAFSKSG-RLLFAG  291 (343)
T ss_pred             eEeecccccccceEEEccCCC-eeeecCCCceeEEEeecC--------CcEEeeeccCcccCCceeEEEcccc-cEEEee
Confidence            777889999999999999994 999999999999999983        3322332322334589999999999 899999


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      ..|.++.+||.-.++       .+..|.||...|+++..+|||.-+
T Consensus       292 y~d~~c~vWDtlk~e-------~vg~L~GHeNRvScl~~s~DG~av  330 (343)
T KOG0286|consen  292 YDDFTCNVWDTLKGE-------RVGVLAGHENRVSCLGVSPDGMAV  330 (343)
T ss_pred             ecCCceeEeeccccc-------eEEEeeccCCeeEEEEECCCCcEE
Confidence            999999999999888       999999999999999999999863

>KOG0271|consensus

Probab=100.00  E-value=2.6e-34  Score=228.42  Aligned_cols=247  Identities=19%  Similarity=0.223  Sum_probs=182.1

Q ss_pred             eEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccC
Q psy4577          44 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWP  123 (384)
Q Consensus        44 ~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (384)
                      +...+.||.++|.|++|+|+|. .|+||+.|.++|+||+.+.                      .+.  .+..+|  ..-
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~Te----------------------Tp~--~t~KgH--~~W  159 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTE----------------------TPL--FTCKGH--KNW  159 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCC----------------------Ccc--eeecCC--ccE
Confidence            3456679999999999999999 7889999999999999774                      111  244456  667


Q ss_pred             eeEEEEecCceeee----cceeeeecccccccc-ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577         124 SLTAQWLPDVTRVI----NEEYKIWKKNTPFLY-DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH  198 (384)
Q Consensus       124 v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (384)
                      |.+++|+|||+.++    +|+|++||..+...+ +.+.+|..-  +.++.|-|-...+.                     
T Consensus       160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~--It~Lawep~hl~p~---------------------  216 (480)
T KOG0271|consen  160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKW--ITALAWEPLHLVPP---------------------  216 (480)
T ss_pred             EEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccc--eeEEeecccccCCC---------------------
Confidence            99999999999998    999999998665443 334444332  34455544433221                     


Q ss_pred             EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q psy4577         199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP  278 (384)
Q Consensus       199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~  278 (384)
                                 ...+....-|..+++|    +......+..+.+|..+|+||+|--+|  ++++||.|++|++|+.....
T Consensus       217 -----------~r~las~skDg~vrIW----d~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~  279 (480)
T KOG0271|consen  217 -----------CRRLASSSKDGSVRIW----DTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGK  279 (480)
T ss_pred             -----------ccceecccCCCCEEEE----EccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchh
Confidence                       1222222333333332    222344577788999999999998766  89999999999999876410


Q ss_pred             C----CC-----------------------------------------------------------------CCCCCccc
Q psy4577         279 S----KP-----------------------------------------------------------------DPNGECHP  289 (384)
Q Consensus       279 ~----~~-----------------------------------------------------------------~~~~~~~~  289 (384)
                      .    ..                                                                 .+....+|
T Consensus       280 ~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp  359 (480)
T KOG0271|consen  280 LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP  359 (480)
T ss_pred             HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc
Confidence            0    00                                                                 11113345


Q ss_pred             eeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         290 DLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       290 ~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      +..+.||..-|+.+.||||+ +++||+|.|.+|++||-++++       .+.+|+||-++|+.++|+.|.+.+.++
T Consensus       360 i~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk-------~lasfRGHv~~VYqvawsaDsRLlVS~  427 (480)
T KOG0271|consen  360 ITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGK-------FLASFRGHVAAVYQVAWSADSRLLVSG  427 (480)
T ss_pred             hhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcc-------hhhhhhhccceeEEEEeccCccEEEEc
Confidence            55678999999999999999 899999999999999999999       999999999999999999998765544

>KOG0263|consensus

Probab=100.00  E-value=1.8e-34  Score=249.44  Aligned_cols=233  Identities=20%  Similarity=0.311  Sum_probs=187.1

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcC--c---c--cc----------cCCCCCCCCeeEEEecccccceEEEEEccCC
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIG--E---E--QS----------TEDAEDGPPELLFIHGGHTAKISDFSWNPNE   64 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~--~---~--~~----------~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~   64 (384)
                      .|++|+. +||.|-.|..|++|.+...+  .   .  ..          .....+.......++.||.++|.++.|+|+.
T Consensus       385 ~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~  463 (707)
T KOG0263|consen  385 EFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDR  463 (707)
T ss_pred             eecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccc
Confidence            5888987 89999999999999987421  0   0  00          0111222334556689999999999999999


Q ss_pred             CcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cce
Q psy4577          65 PWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEE  140 (384)
Q Consensus        65 ~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~  140 (384)
                      + +|+|+|.|+++|+|.+.+..             .+-           ...||  ..||+.++|+|-|-+++    |++
T Consensus       464 r-fLlScSED~svRLWsl~t~s-------------~~V-----------~y~GH--~~PVwdV~F~P~GyYFatas~D~t  516 (707)
T KOG0263|consen  464 R-FLLSCSEDSSVRLWSLDTWS-------------CLV-----------IYKGH--LAPVWDVQFAPRGYYFATASHDQT  516 (707)
T ss_pred             c-ceeeccCCcceeeeecccce-------------eEE-----------EecCC--CcceeeEEecCCceEEEecCCCce
Confidence            9 77799999999999997731             111           33355  67899999999998877    777


Q ss_pred             eeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccC
Q psy4577         141 YKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDT  220 (384)
Q Consensus       141 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~  220 (384)
                      .++|....                                                                        
T Consensus       517 ArLWs~d~------------------------------------------------------------------------  524 (707)
T KOG0263|consen  517 ARLWSTDH------------------------------------------------------------------------  524 (707)
T ss_pred             eeeeeccc------------------------------------------------------------------------
Confidence            77764422                                                                        


Q ss_pred             cCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCce
Q psy4577         221 DKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEG  300 (384)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i  300 (384)
                                   ..+...+.+|...|.|+.|+|+. +++|+||.|.+||+||..        +|..  +..|.||.++|
T Consensus       525 -------------~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~--------~G~~--VRiF~GH~~~V  580 (707)
T KOG0263|consen  525 -------------NKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVS--------TGNS--VRIFTGHKGPV  580 (707)
T ss_pred             -------------CCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcC--------CCcE--EEEecCCCCce
Confidence                         00133345789999999999998 699999999999999997        5544  66899999999


Q ss_pred             EEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         301 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       301 ~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      .+++|||+| ++|+||+.||.|++||+.+++       ++..+.+|++.|+++.||.+|..+++..
T Consensus       581 ~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~-------~v~~l~~Ht~ti~SlsFS~dg~vLasgg  638 (707)
T KOG0263|consen  581 TALAFSPCG-RYLASGDEDGLIKIWDLANGS-------LVKQLKGHTGTIYSLSFSRDGNVLASGG  638 (707)
T ss_pred             EEEEEcCCC-ceEeecccCCcEEEEEcCCCc-------chhhhhcccCceeEEEEecCCCEEEecC
Confidence            999999999 899999999999999999999       9999999999999999999999877663

>KOG0295|consensus

Probab=100.00  E-value=3.5e-34  Score=226.24  Aligned_cols=262  Identities=18%  Similarity=0.267  Sum_probs=199.8

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      -|+|+.. +.|+++.|.+|++||..+              .++...++||++.|.+|+|+..|+ +||++|.|=.+++||
T Consensus       115 ~~hp~~~-~v~~as~d~tikv~D~~t--------------g~~e~~LrGHt~sv~di~~~a~Gk-~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen  115 IFHPSEA-LVVSASEDATIKVFDTET--------------GELERSLRGHTDSVFDISFDASGK-YLATCSSDLSAKLWD  178 (406)
T ss_pred             eeccCce-EEEEecCCceEEEEEccc--------------hhhhhhhhccccceeEEEEecCcc-EEEecCCccchhhee
Confidence            5789886 899999999999999987              477888999999999999999999 889999999899999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~  157 (384)
                      ....                       ....+.+.+|  +..|.+++|.|.|..++    |.+|+.|+..+..+...+..
T Consensus       179 ~~~~-----------------------~~c~ks~~gh--~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~  233 (406)
T KOG0295|consen  179 FDTF-----------------------FRCIKSLIGH--EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG  233 (406)
T ss_pred             HHHH-----------------------HHHHHHhcCc--ccceeeEEEEecCCeeeecccccceeEEecccceeEEeccC
Confidence            8652                       0011233344  66788999999998888    99999999999877666665


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI  237 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  237 (384)
                      +.. | ...++...|                                     +..+....-|.....|..    ..+...
T Consensus       234 h~e-w-vr~v~v~~D-------------------------------------Gti~As~s~dqtl~vW~~----~t~~~k  270 (406)
T KOG0295|consen  234 HSE-W-VRMVRVNQD-------------------------------------GTIIASCSNDQTLRVWVV----ATKQCK  270 (406)
T ss_pred             chH-h-EEEEEecCC-------------------------------------eeEEEecCCCceEEEEEe----ccchhh
Confidence            533 1 111222222                                     222222222222222211    111112


Q ss_pred             EEEeecCCceEEEEEcCCC--------------CcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEE
Q psy4577         238 EIKINHEGEVNRARYMPQN--------------PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGL  303 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~--------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  303 (384)
                      ..+..|+.+|.+++|.|..              ..++++++.|++|++||+.        .+  ..+.++.||..+|..+
T Consensus       271 ~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~--------tg--~cL~tL~ghdnwVr~~  340 (406)
T KOG0295|consen  271 AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS--------TG--MCLFTLVGHDNWVRGV  340 (406)
T ss_pred             hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc--------CC--eEEEEEecccceeeee
Confidence            3345788889999987631              1389999999999999996        44  4577999999999999


Q ss_pred             EeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         304 SWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       304 ~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      +|+|.| +||+|+..|+++++||+++.+       +..++..|...|++++|+.+-+...+.
T Consensus       341 af~p~G-kyi~ScaDDktlrvwdl~~~~-------cmk~~~ah~hfvt~lDfh~~~p~VvTG  394 (406)
T KOG0295|consen  341 AFSPGG-KYILSCADDKTLRVWDLKNLQ-------CMKTLEAHEHFVTSLDFHKTAPYVVTG  394 (406)
T ss_pred             EEcCCC-eEEEEEecCCcEEEEEeccce-------eeeccCCCcceeEEEecCCCCceEEec
Confidence            999999 899999999999999999999       999999999999999999988854443

>KOG0273|consensus

Probab=100.00  E-value=1.2e-33  Score=230.35  Aligned_cols=242  Identities=18%  Similarity=0.274  Sum_probs=187.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+.+|. +||+|+.||.++||+...               .++.++..|+++|.+|.|+..|. +|++++.|+++.+|
T Consensus       241 L~Wn~~G~-~LatG~~~G~~riw~~~G---------------~l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilw  303 (524)
T KOG0273|consen  241 LDWNNDGT-LLATGSEDGEARIWNKDG---------------NLISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILW  303 (524)
T ss_pred             EEecCCCC-eEEEeecCcEEEEEecCc---------------hhhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEE
Confidence            57999997 899999999999999874               77888899999999999999999 66799999999999


Q ss_pred             EcccCCCccch-----h------------heeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cc
Q psy4577          81 SVVCVEPFDDA-----V------------EERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NE  139 (384)
Q Consensus        81 d~~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~  139 (384)
                      |..+++.....     .            .....++.+.+++.....-..++.+|  ..+|.++.|.|.|..++    |+
T Consensus       304 d~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH--~g~V~alk~n~tg~LLaS~SdD~  381 (524)
T KOG0273|consen  304 DAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGH--HGEVNALKWNPTGSLLASCSDDG  381 (524)
T ss_pred             eccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecc--cCceEEEEECCCCceEEEecCCC
Confidence            99776321110     0            01112344666655544444566676  77888999999888887    88


Q ss_pred             eeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccccc
Q psy4577         140 EYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYD  219 (384)
Q Consensus       140 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d  219 (384)
                      ++++|.+.......-+                                                                
T Consensus       382 TlkiWs~~~~~~~~~l----------------------------------------------------------------  397 (524)
T KOG0273|consen  382 TLKIWSMGQSNSVHDL----------------------------------------------------------------  397 (524)
T ss_pred             eeEeeecCCCcchhhh----------------------------------------------------------------
Confidence            8888887554443222                                                                


Q ss_pred             CcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCC--------CcEEEEEeCCCcEEEEecCCCCCCCCCCCCcccee
Q psy4577         220 TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQN--------PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDL  291 (384)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~--------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  291 (384)
                                           .+|+..|..+.|+|.|        ...+++++.|++|++||+.        .+  .++.
T Consensus       398 ---------------------~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~--------~g--v~i~  446 (524)
T KOG0273|consen  398 ---------------------QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE--------SG--VPIH  446 (524)
T ss_pred             ---------------------hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc--------CC--ceeE
Confidence                                 2444455555555533        3489999999999999986        33  4677


Q ss_pred             eecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         292 RLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       292 ~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      .|..|..+|++++|+|+| ++||+|+.||.|.+|++++++       .++.+.+ .+.|..|+|+-+|..+.++
T Consensus       447 ~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~-------l~~s~~~-~~~Ifel~Wn~~G~kl~~~  511 (524)
T KOG0273|consen  447 TLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGK-------LVKSYQG-TGGIFELCWNAAGDKLGAC  511 (524)
T ss_pred             eeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchh-------eeEeecC-CCeEEEEEEcCCCCEEEEE
Confidence            899999999999999999 899999999999999999998       8888875 4569999999999765543

>KOG0318|consensus

Probab=100.00  E-value=2e-32  Score=226.16  Aligned_cols=321  Identities=15%  Similarity=0.168  Sum_probs=205.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec---ccccceEEEEEccCCCcEEEEEecCCeE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG---GHTAKISDFSWNPNEPWVICSVSEDNIM   77 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---gh~~~V~~l~~~~~~~~~l~s~s~D~~i   77 (384)
                      |+|+|||. ++||++.||+|.+||-.+              .+.+..+.   +|++.|++|+|+||++ .++|+|.|.++
T Consensus       196 VRysPDG~-~Fat~gsDgki~iyDGkt--------------ge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~  259 (603)
T KOG0318|consen  196 VRYSPDGS-RFATAGSDGKIYIYDGKT--------------GEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTI  259 (603)
T ss_pred             EEECCCCC-eEEEecCCccEEEEcCCC--------------ccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceE
Confidence            57999997 799999999999999876              35666666   8999999999999999 67799999999


Q ss_pred             EEEEcccCCCccch-----h--------------heeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-
Q psy4577          78 QILSVVCVEPFDDA-----V--------------EERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-  137 (384)
Q Consensus        78 ~vwd~~~~~~~~~~-----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-  137 (384)
                      ||||+.+.+.....     .              -.-+..+.+..++...+....++.||  ...|.++..+|+++.++ 
T Consensus       260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH--nK~ITaLtv~~d~~~i~S  337 (603)
T KOG0318|consen  260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH--NKSITALTVSPDGKTIYS  337 (603)
T ss_pred             EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc--ccceeEEEEcCCCCEEEe
Confidence            99999876432111     0              01124566677776666666788888  78899999999998887 


Q ss_pred             ---cceeeeecccccccccee-ecccccccceeeeecc-CCCCCCCCccceeEEEEeeeccCCCCe----EEEEEeecCC
Q psy4577         138 ---NEEYKIWKKNTPFLYDLV-MTHALEWPSLTAQWLP-DVTRPEGKDYSIHRLILGTHTSDEQNH----LLIASVQLPN  208 (384)
Q Consensus       138 ---d~~v~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~  208 (384)
                         ||.|.-|+...+....+. ..|....  ..+.-.. +.....+-+-.+..+.+....-...+.    .+-..++...
T Consensus       338 gsyDG~I~~W~~~~g~~~~~~g~~h~nqI--~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~  415 (603)
T KOG0318|consen  338 GSYDGHINSWDSGSGTSDRLAGKGHTNQI--KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS  415 (603)
T ss_pred             eccCceEEEEecCCccccccccccccceE--EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence               999999999776554332 1121111  0010000 000000000011111110000000000    0000122111


Q ss_pred             CCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcc
Q psy4577         209 EDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECH  288 (384)
Q Consensus       209 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  288 (384)
                      ++. .++..++.......   .  ..  ......-.-...+++++|++. .+|.|+.|+.|+||.+..        ....
T Consensus       416 d~~-~avv~~~~~iv~l~---~--~~--~~~~~~~~y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g--------~~l~  478 (603)
T KOG0318|consen  416 DGG-TAVVACISDIVLLQ---D--QT--KVSSIPIGYESSAVAVSPDGS-EVAVGGQDGKVHVYSLSG--------DELK  478 (603)
T ss_pred             CCC-EEEEEecCcEEEEe---c--CC--cceeeccccccceEEEcCCCC-EEEEecccceEEEEEecC--------Cccc
Confidence            111 11111111111000   0  00  001112234567899999995 999999999999999963        2334


Q ss_pred             ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         289 PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       289 ~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      ....+..|.++|++++||||+ .+||+|...+.|.+||+.+...      ....+..|+..|++++|+|+...+++.
T Consensus       479 ee~~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~------~~~~w~FHtakI~~~aWsP~n~~vATG  548 (603)
T KOG0318|consen  479 EEAKLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREV------KTNRWAFHTAKINCVAWSPNNKLVATG  548 (603)
T ss_pred             ceeeeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCce------ecceeeeeeeeEEEEEeCCCceEEEec
Confidence            455677899999999999999 7999999999999999998862      233344599999999999999877655

>KOG0282|consensus

Probab=100.00  E-value=3.1e-34  Score=234.50  Aligned_cols=276  Identities=16%  Similarity=0.201  Sum_probs=203.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      +.|.|-...||++|+.|+.|+||++-..             ..++.++.||..+|.+++|+++|. -++|+|.|+.+++|
T Consensus       220 i~~fp~~~hLlLS~gmD~~vklW~vy~~-------------~~~lrtf~gH~k~Vrd~~~s~~g~-~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  220 IQWFPKKGHLLLSGGMDGLVKLWNVYDD-------------RRCLRTFKGHRKPVRDASFNNCGT-SFLSASFDRFLKLW  285 (503)
T ss_pred             hhhccceeeEEEecCCCceEEEEEEecC-------------cceehhhhcchhhhhhhhccccCC-eeeeeecceeeeee
Confidence            4678844469999999999999999763             388999999999999999999999 55699999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~  155 (384)
                      |+++|+..             ..+.              ....+.++.|.|++..++     |+.|+.||++.+.+...+
T Consensus       286 DtETG~~~-------------~~f~--------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY  338 (503)
T KOG0282|consen  286 DTETGQVL-------------SRFH--------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY  338 (503)
T ss_pred             ccccceEE-------------EEEe--------------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence            99997321             1111              134567999999994443     999999999988764433


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      ..+-.                                       .+..+.|.+.+.+++....|.+.+.|...-   +..
T Consensus       339 d~hLg---------------------------------------~i~~i~F~~~g~rFissSDdks~riWe~~~---~v~  376 (503)
T KOG0282|consen  339 DRHLG---------------------------------------AILDITFVDEGRRFISSSDDKSVRIWENRI---PVP  376 (503)
T ss_pred             Hhhhh---------------------------------------heeeeEEccCCceEeeeccCccEEEEEcCC---Ccc
Confidence            22211                                       122233333333333333333333331100   011


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC--ceEEEEeCCCCCCeE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK--EGYGLSWNPSLNGYL  313 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~s~~~~~~l  313 (384)
                      .......+.....++..+|+++ +++.-+.|..|.+|.+...       ........+.||..  .-..+.||||| ++|
T Consensus       377 ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~-------~r~nkkK~feGh~vaGys~~v~fSpDG-~~l  447 (503)
T KOG0282|consen  377 IKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPP-------FRLNKKKRFEGHSVAGYSCQVDFSPDG-RTL  447 (503)
T ss_pred             chhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccc-------cccCHhhhhcceeccCceeeEEEcCCC-CeE
Confidence            0111223345567899999996 9999999999999998642       22234457888864  55678999999 799


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccceee
Q psy4577         314 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKKK  375 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~~  375 (384)
                      ++|+.||.+.+||.++.+       .+.++++|.+++..+.|||..+...++|.|++..+..
T Consensus       448 ~SGdsdG~v~~wdwkt~k-------l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw  502 (503)
T KOG0282|consen  448 CSGDSDGKVNFWDWKTTK-------LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW  502 (503)
T ss_pred             EeecCCccEEEeechhhh-------hhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence            999999999999999998       9999999999999999999999999999999887754

>KOG0645|consensus

Probab=100.00  E-value=4.5e-32  Score=206.24  Aligned_cols=284  Identities=16%  Similarity=0.210  Sum_probs=209.1

Q ss_pred             CCCCCC-CCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEe-cccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577           1 VQWSPH-NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~-~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~   78 (384)
                      ++|+|- |. +||||+.|+.|+||+... +          ....+..++ .+|+..|.+++|+|.|+ +||+||.|.++.
T Consensus        20 ~awhp~~g~-ilAscg~Dk~vriw~~~~-~----------~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~   86 (312)
T KOG0645|consen   20 VAWHPGKGV-ILASCGTDKAVRIWSTSS-G----------DSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVV   86 (312)
T ss_pred             EEeccCCce-EEEeecCCceEEEEecCC-C----------CcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEE
Confidence            478998 64 899999999999999873 1          113344333 47999999999999999 889999999999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccce
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDL  154 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~  154 (384)
                      ||.-..+              ++        -....+.||  +..|.+++|+++|.+++    |.+|.+|.......|+.
T Consensus        87 Iw~k~~~--------------ef--------ecv~~lEGH--EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec  142 (312)
T KOG0645|consen   87 IWKKEDG--------------EF--------ECVATLEGH--ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC  142 (312)
T ss_pred             EeecCCC--------------ce--------eEEeeeecc--ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence            9976542              11        123467788  88899999999999999    99999998875444433


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      ....+                                    ++..-+..+.++|....+....||.+++.|.-.. ....
T Consensus       143 ~aVL~------------------------------------~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW  185 (312)
T KOG0645|consen  143 IAVLQ------------------------------------EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-DDDW  185 (312)
T ss_pred             Eeeec------------------------------------cccccccEEEEcCCcceeEEeccCCeEEEEeecC-CCCe
Confidence            21110                                    0111234455566666677778888887775433 3344


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                      .....+.+|+..|.+++|+|.|. .|+++++|++++||.+..        .      .-.-|..+++.++|. +  ..||
T Consensus       186 ~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~--------~------~~~~~sr~~Y~v~W~-~--~~Ia  247 (312)
T KOG0645|consen  186 ECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYT--------D------LSGMHSRALYDVPWD-N--GVIA  247 (312)
T ss_pred             eEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeecc--------C------cchhcccceEeeeec-c--cceE
Confidence            55777889999999999999995 899999999999998631        1      112377899999999 5  4899


Q ss_pred             EeeCCCcEEEEecCCCCCCCcccccee-eeeccCCcEeEEEEecCCCcccccccccccceeeEE
Q psy4577         315 SASDDHTICLWDINATPKENRVIDAKT-IFTGHTAVVELELIERLTKKADPVCTLEKAKKKKEV  377 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~~~~  377 (384)
                      |++.|+.|+++...... .++.+..+. .-..|...|++++|+|.++.....|..++..+..++
T Consensus       248 S~ggD~~i~lf~~s~~~-d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  248 SGGGDDAIRLFKESDSP-DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL  310 (312)
T ss_pred             eccCCCEEEEEEecCCC-CCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence            99999999999887532 233333333 234598999999999987877778877766665544

>KOG0279|consensus

Probab=100.00  E-value=1.3e-32  Score=210.05  Aligned_cols=222  Identities=19%  Similarity=0.250  Sum_probs=178.3

Q ss_pred             CCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEc
Q psy4577           3 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSV   82 (384)
Q Consensus         3 fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~   82 (384)
                      ..+.++.+|.+++.|.++.+|++...         +.......+.+.||+..|..+..+++|. +.+|+|.|+++|+||+
T Consensus        23 ~~~~~~~~l~sasrDk~ii~W~L~~d---------d~~~G~~~r~~~GHsH~v~dv~~s~dg~-~alS~swD~~lrlWDl   92 (315)
T KOG0279|consen   23 IKIKNSDILVSASRDKTIIVWKLTSD---------DIKYGVPVRRLTGHSHFVSDVVLSSDGN-FALSASWDGTLRLWDL   92 (315)
T ss_pred             eecCCCceEEEcccceEEEEEEeccC---------ccccCceeeeeeccceEecceEEccCCc-eEEeccccceEEEEEe
Confidence            34556678999999999999999752         1112345778899999999999999999 6679999999999999


Q ss_pred             ccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecc
Q psy4577          83 VCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTH  158 (384)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~  158 (384)
                      .+++.                        .+.+.||  ...|.+++|+|+.+.++    |.++++|+.-+...|.+    
T Consensus        93 ~~g~~------------------------t~~f~GH--~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~----  142 (315)
T KOG0279|consen   93 ATGES------------------------TRRFVGH--TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTI----  142 (315)
T ss_pred             cCCcE------------------------EEEEEec--CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEE----
Confidence            88511                        1245567  56799999999999988    88899987643322211    


Q ss_pred             cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEE
Q psy4577         159 ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE  238 (384)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  238 (384)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (315)
T KOG0279|consen  143 --------------------------------------------------------------------------------  142 (315)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeecCCceEEEEEcCC--CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         239 IKINHEGEVNRARYMPQ--NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       239 ~~~~~~~~v~~v~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ....|.+-|++++|+|+  ++ ++++++.|++|++||++          .++....+.||.+.++.+++|||| .++++|
T Consensus       143 ~~~~~~~WVscvrfsP~~~~p-~Ivs~s~DktvKvWnl~----------~~~l~~~~~gh~~~v~t~~vSpDG-slcasG  210 (315)
T KOG0279|consen  143 HEDSHREWVSCVRFSPNESNP-IIVSASWDKTVKVWNLR----------NCQLRTTFIGHSGYVNTVTVSPDG-SLCASG  210 (315)
T ss_pred             ecCCCcCcEEEEEEcCCCCCc-EEEEccCCceEEEEccC----------CcchhhccccccccEEEEEECCCC-CEEecC
Confidence            00123667999999998  55 99999999999999986          334556889999999999999999 699999


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADP  364 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  364 (384)
                      +.||.+.+||++.++       .+.++. |...|.+++|+|...-+.+
T Consensus       211 gkdg~~~LwdL~~~k-------~lysl~-a~~~v~sl~fspnrywL~~  250 (315)
T KOG0279|consen  211 GKDGEAMLWDLNEGK-------NLYSLE-AFDIVNSLCFSPNRYWLCA  250 (315)
T ss_pred             CCCceEEEEEccCCc-------eeEecc-CCCeEeeEEecCCceeEee
Confidence            999999999999998       777664 7889999999998875543

>KOG0279|consensus

Probab=100.00  E-value=4.6e-32  Score=207.04  Aligned_cols=220  Identities=18%  Similarity=0.250  Sum_probs=168.5

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      ..++||. +.++++.|+++++||+.+              .+....+.||...|.+++|++|.+ .++|||.|++|++|+
T Consensus        70 ~~s~dg~-~alS~swD~~lrlWDl~~--------------g~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwn  133 (315)
T KOG0279|consen   70 VLSSDGN-FALSASWDGTLRLWDLAT--------------GESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWN  133 (315)
T ss_pred             EEccCCc-eEEeccccceEEEEEecC--------------CcEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeee
Confidence            4678997 799999999999999987              356677789999999999999999 778999999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCc--eeee----cceeeeecccccccccee
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV--TRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      +.+..             .+            .+..+...+-|.+++|+|..  ..++    |++|++||+++-.+    
T Consensus       134 t~g~c-------------k~------------t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l----  184 (315)
T KOG0279|consen  134 TLGVC-------------KY------------TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL----  184 (315)
T ss_pred             ecccE-------------EE------------EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch----
Confidence            97641             11            11112115568899999994  4555    99999999865333    


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (315)
T KOG0279|consen  185 --------------------------------------------------------------------------------  184 (315)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                       .....+|++.++.+++||||. ++++|+.||.+.+||++        .+..  +..+ +|...|.+++|+|+. .+|+.
T Consensus       185 -~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~--------~~k~--lysl-~a~~~v~sl~fspnr-ywL~~  250 (315)
T KOG0279|consen  185 -RTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLN--------EGKN--LYSL-EAFDIVNSLCFSPNR-YWLCA  250 (315)
T ss_pred             -hhccccccccEEEEEECCCCC-EEecCCCCceEEEEEcc--------CCce--eEec-cCCCeEeeEEecCCc-eeEee
Confidence             122347889999999999995 99999999999999997        3332  4444 578899999999995 45554


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeee----cc-----CCcEeEEEEecCCCcccccccc
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFT----GH-----TAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~----~h-----~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                       ..+-.|+|||+.+..       .+..++    +.     .-...+++|++||..+.+.-..
T Consensus       251 -at~~sIkIwdl~~~~-------~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td  304 (315)
T KOG0279|consen  251 -ATATSIKIWDLESKA-------VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD  304 (315)
T ss_pred             -ccCCceEEEeccchh-------hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC
Confidence             455679999999987       444443    11     2235789999999987765443

>KOG0293|consensus

Probab=100.00  E-value=1.7e-32  Score=220.16  Aligned_cols=273  Identities=14%  Similarity=0.201  Sum_probs=204.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|||+|. +||+|+.|.+..+|++....           ..++.+++.||..+|.-+.||||.+ .|++|+.|..+++|
T Consensus       230 l~FS~nGk-yLAsaSkD~Taiiw~v~~d~-----------~~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  230 LQFSHNGK-YLASASKDSTAIIWIVVYDV-----------HFKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDEVLSLW  296 (519)
T ss_pred             EEEcCCCe-eEeeccCCceEEEEEEecCc-----------ceeeeeeeecccCceEEEEECCCCC-eEEecCchHheeec
Confidence            47999997 89999999999999987522           2578899999999999999999999 55688999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.+++..             ..            ..++.+.++.+++|.|||..++    |+++..|+.++........
T Consensus       297 Dv~tgd~~-------------~~------------y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~g  351 (519)
T KOG0293|consen  297 DVDTGDLR-------------HL------------YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEG  351 (519)
T ss_pred             cCCcchhh-------------hh------------cccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccc
Confidence            99987321             11            1122256788999999999887    8888999887655432211


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .                                       +.-.+..+++..+++.+....-|.....+......     
T Consensus       352 v---------------------------------------r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~-----  387 (519)
T KOG0293|consen  352 V---------------------------------------RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV-----  387 (519)
T ss_pred             c---------------------------------------ccceeEEEEEcCCCcEEEEEecccceeeechhhhh-----
Confidence            0                                       11235566666666666666666555544221111     


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC--ceEEEEeCCCCCCeEE
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK--EGYGLSWNPSLNGYLL  314 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~s~~~~~~l~  314 (384)
                      ....+....+|++++.|.+++ ++++.=.+..|++||+.          ....+..+.||..  .+..-+|--..+.+++
T Consensus       388 dr~lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~----------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia  456 (519)
T KOG0293|consen  388 DRGLISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLE----------ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIA  456 (519)
T ss_pred             hhccccccCceeEEEEcCCCc-EEEEEcccCeeEEeecc----------hhhHHHHhhcccccceEEEeccCCCCcceEE
Confidence            111345567899999999996 77777789999999995          2334567888876  3445566554346999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccce
Q psy4577         315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKK  373 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~  373 (384)
                      |||+|+.|+||+..+++       ++.++.||...|++|+|+|..+.+.+..+.++..+
T Consensus       457 SGSED~kvyIWhr~sgk-------ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIR  508 (519)
T KOG0293|consen  457 SGSEDSKVYIWHRISGK-------LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIR  508 (519)
T ss_pred             ecCCCceEEEEEccCCc-------eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEE
Confidence            99999999999999999       99999999999999999999998887766655443

>KOG0263|consensus

Probab=100.00  E-value=2.8e-32  Score=235.94  Aligned_cols=192  Identities=23%  Similarity=0.385  Sum_probs=163.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+.+ +|+++|.|++||+|.+.+              ...+-...||..+|.+++|+|-|- ++||||.|++.++|
T Consensus       457 ~sFsPd~r-fLlScSED~svRLWsl~t--------------~s~~V~y~GH~~PVwdV~F~P~Gy-YFatas~D~tArLW  520 (707)
T KOG0263|consen  457 CSFSPDRR-FLLSCSEDSSVRLWSLDT--------------WSCLVIYKGHLAPVWDVQFAPRGY-YFATASHDQTARLW  520 (707)
T ss_pred             eeeccccc-ceeeccCCcceeeeeccc--------------ceeEEEecCCCcceeeEEecCCce-EEEecCCCceeeee
Confidence            47999997 899999999999999987              466667789999999999999988 77899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      .....                      .+  .+++.+|  ...|.|+.|+|+..+++    |.+||+||+.++..     
T Consensus       521 s~d~~----------------------~P--lRifagh--lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-----  569 (707)
T KOG0263|consen  521 STDHN----------------------KP--LRIFAGH--LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-----  569 (707)
T ss_pred             ecccC----------------------Cc--hhhhccc--ccccceEEECCcccccccCCCCceEEEEEcCCCcE-----
Confidence            88653                      11  2355677  66788999999999998    88999998854333     


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                                                                                      
T Consensus       570 --------------------------------------------------------------------------------  569 (707)
T KOG0263|consen  570 --------------------------------------------------------------------------------  569 (707)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      +..+.+|.++|.+++|||+|. +||+|+.||.|.+||+.        .+  .++..+.+|.+.|.++.||.+| ..||+|
T Consensus       570 VRiF~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~--------~~--~~v~~l~~Ht~ti~SlsFS~dg-~vLasg  637 (707)
T KOG0263|consen  570 VRIFTGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLA--------NG--SLVKQLKGHTGTIYSLSFSRDG-NVLASG  637 (707)
T ss_pred             EEEecCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcC--------CC--cchhhhhcccCceeEEEEecCC-CEEEec
Confidence            223347999999999999995 99999999999999995        33  3567899999999999999999 799999


Q ss_pred             eCCCcEEEEecCCCC
Q psy4577         317 SDDHTICLWDINATP  331 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~  331 (384)
                      |.|.+|++||+....
T Consensus       638 g~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  638 GADNSVRLWDLTKVI  652 (707)
T ss_pred             CCCCeEEEEEchhhc
Confidence            999999999997654

>KOG0277|consensus

Probab=100.00  E-value=8.7e-33  Score=208.26  Aligned_cols=234  Identities=19%  Similarity=0.241  Sum_probs=191.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|++..++.+++++.||+++|||...             +...+..++.|...|.++.|++..++.++++|-|++||+|
T Consensus        66 V~Wse~~e~~~~~a~GDGSLrl~d~~~-------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW  132 (311)
T KOG0277|consen   66 VAWSENHENQVIAASGDGSLRLFDLTM-------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW  132 (311)
T ss_pred             eeecCCCcceEEEEecCceEEEeccCC-------------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence            579999888899999999999999654             2356777899999999999999877778889999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~  155 (384)
                      +...++.+                        .++.||  ..-|+.++|+|....++     |++.++||++.+..    
T Consensus       133 ~~~r~~Sv------------------------~Tf~gh--~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----  182 (311)
T KOG0277|consen  133 DPNRPNSV------------------------QTFNGH--NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----  182 (311)
T ss_pred             cCCCCcce------------------------EeecCC--ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----
Confidence            98654211                        234455  66788999999876655     88888888643211    


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                     +
T Consensus       183 -------------------------------------------------------------------------------~  183 (311)
T KOG0277|consen  183 -------------------------------------------------------------------------------F  183 (311)
T ss_pred             -------------------------------------------------------------------------------e
Confidence                                                                                           0


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                        .....|...|.+..|+..+.++++||+.|+.||+||++.         ...|+..+.+|.-.|..++|||....+|||
T Consensus       184 --~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~---------~r~pl~eL~gh~~AVRkvk~Sph~~~lLaS  252 (311)
T KOG0277|consen  184 --MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN---------LRTPLFELNGHGLAVRKVKFSPHHASLLAS  252 (311)
T ss_pred             --eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhh---------ccccceeecCCceEEEEEecCcchhhHhhh
Confidence              112367778999999998889999999999999999973         345788999999999999999987679999


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccce
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKK  373 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~  373 (384)
                      ++.|-+++|||...+..      .+.+...|+..|..++||+-.+...+.|.|+..-.
T Consensus       253 asYDmT~riw~~~~~ds------~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~  304 (311)
T KOG0277|consen  253 ASYDMTVRIWDPERQDS------AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLY  304 (311)
T ss_pred             ccccceEEecccccchh------hhhhhhccceEEeccccccccCceeeeccccccee
Confidence            99999999999986542      67777789999999999999888888998886543

>KOG0296|consensus

Probab=100.00  E-value=1.8e-31  Score=211.00  Aligned_cols=297  Identities=16%  Similarity=0.258  Sum_probs=206.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+.+|+.. ++|||+.|....||+..+              ......+.||++.|+++.|+.+|. +||||+.+|.|+||
T Consensus        70 vsl~P~~~-l~aTGGgDD~AflW~~~~--------------ge~~~eltgHKDSVt~~~Fshdgt-lLATGdmsG~v~v~  133 (399)
T KOG0296|consen   70 VSLHPNNN-LVATGGGDDLAFLWDIST--------------GEFAGELTGHKDSVTCCSFSHDGT-LLATGDMSGKVLVF  133 (399)
T ss_pred             EEeCCCCc-eEEecCCCceEEEEEccC--------------CcceeEecCCCCceEEEEEccCce-EEEecCCCccEEEE
Confidence            35689664 999999999999999987              357788899999999999999999 89999999999999


Q ss_pred             EcccCCCccch------------------hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c
Q psy4577          81 SVVCVEPFDDA------------------VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N  138 (384)
Q Consensus        81 d~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d  138 (384)
                      +..++...-..                  ..-...++.+-.|+.......+++.||  ..++.+-.|.|+|++++    |
T Consensus       134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh--~~~ct~G~f~pdGKr~~tgy~d  211 (399)
T KOG0296|consen  134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH--NSPCTCGEFIPDGKRILTGYDD  211 (399)
T ss_pred             EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC--CCCcccccccCCCceEEEEecC
Confidence            99887321110                  111234567788888876677888888  78899999999999988    9


Q ss_pred             ceeeeeccccccccceeecc-cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccc
Q psy4577         139 EEYKIWKKNTPFLYDLVMTH-ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASN  217 (384)
Q Consensus       139 ~~v~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  217 (384)
                      +++++|+..+...+..+... ..+-|++.+...+........+........++        ..+..+             
T Consensus       212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s--------gKVv~~-------------  270 (399)
T KOG0296|consen  212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS--------GKVVNC-------------  270 (399)
T ss_pred             ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcccc--------ceEEEe-------------
Confidence            99999999877554443322 12222322221111110011111000000000        000000             


Q ss_pred             ccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcC---CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec
Q psy4577         218 YDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP---QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR  294 (384)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  294 (384)
                      ...+              .......+...+.+|.+.|   .-+ ++|+|+.||+|.|||+..        .   .++...
T Consensus       271 ~n~~--------------~~~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~--------~---~~R~~c  324 (399)
T KOG0296|consen  271 NNGT--------------VPELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIAIYDLAA--------S---TLRHIC  324 (399)
T ss_pred             cCCC--------------Cccccccchhhhhhhhhcccccccc-hhhcccccceEEEEeccc--------c---hhheec
Confidence            0000              0111223444555555544   555 899999999999999852        1   233455


Q ss_pred             CCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccccccc
Q psy4577         295 GHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKA  371 (384)
Q Consensus       295 ~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~  371 (384)
                      .|..+|+.+.|-++  .+|++++.||.|++||.++++       ++.++.||...|.+++.+|+.+.+.++...+..
T Consensus       325 ~he~~V~~l~w~~t--~~l~t~c~~g~v~~wDaRtG~-------l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a  392 (399)
T KOG0296|consen  325 EHEDGVTKLKWLNT--DYLLTACANGKVRQWDARTGQ-------LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTA  392 (399)
T ss_pred             cCCCceEEEEEcCc--chheeeccCceEEeeeccccc-------eEEEEecCchheeEEEEcCCCcEEEEecCCCeE
Confidence            68899999999994  599999999999999999999       999999999999999999999987777654443

>KOG0284|consensus

Probab=100.00  E-value=9.2e-33  Score=221.32  Aligned_cols=262  Identities=16%  Similarity=0.278  Sum_probs=200.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |.|.|+|+ .|+||+..|...||+...              ......++.|.++|.++.|++++. .++||+.+|.||+|
T Consensus       102 v~WtPeGR-RLltgs~SGEFtLWNg~~--------------fnFEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyW  165 (464)
T KOG0284|consen  102 VRWTPEGR-RLLTGSQSGEFTLWNGTS--------------FNFETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYW  165 (464)
T ss_pred             EEEcCCCc-eeEeecccccEEEecCce--------------eeHHHHhhhhcccceeEEEccCCC-EEEEcCCCceEEec
Confidence            57999998 599999999999999754              233345679999999999999999 66799999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      +..-.                         ..+.+..| +...|.+++|+|....++    |++++|||....+.-..+.
T Consensus       166 qpnmn-------------------------nVk~~~ah-h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~  219 (464)
T KOG0284|consen  166 QPNMN-------------------------NVKIIQAH-HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR  219 (464)
T ss_pred             ccchh-------------------------hhHHhhHh-hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec
Confidence            87532                         00122223 146788999999887777    9999999998777666666


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      ++.-+  +.+++|.|....                         |.+..     +.-.+..||...+           -+
T Consensus       220 GHgwd--VksvdWHP~kgL-------------------------iasgs-----kDnlVKlWDprSg-----------~c  256 (464)
T KOG0284|consen  220 GHGWD--VKSVDWHPTKGL-------------------------IASGS-----KDNLVKLWDPRSG-----------SC  256 (464)
T ss_pred             cCCCC--cceeccCCccce-------------------------eEEcc-----CCceeEeecCCCc-----------ch
Confidence            55433  556777665420                         11000     0012333443322           23


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      +..+.+|+..|..+.|+|++ ++|+|+|.|..++++|++          ..+.+..+++|...+++++|+|-.+.+|++|
T Consensus       257 l~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR----------~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg  325 (464)
T KOG0284|consen  257 LATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIR----------TMKELFTYRGHKKDVTSLTWHPLNESLFTSG  325 (464)
T ss_pred             hhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehh----------HhHHHHHhhcchhhheeeccccccccceeec
Confidence            56667899999999999999 699999999999999996          2335668999999999999999878899999


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeee-eccCCcEeEEEEecCCCccccc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIF-TGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      +.||.|..|.+...+       ++..+ .+|...|++++|||-|..+++.
T Consensus       326 g~Dgsvvh~~v~~~~-------p~~~i~~AHd~~iwsl~~hPlGhil~tg  368 (464)
T KOG0284|consen  326 GSDGSVVHWVVGLEE-------PLGEIPPAHDGEIWSLAYHPLGHILATG  368 (464)
T ss_pred             cCCCceEEEeccccc-------cccCCCcccccceeeeeccccceeEeec
Confidence            999999999998555       55554 4699999999999999876653

>KOG0315|consensus

Probab=100.00  E-value=1.2e-30  Score=196.13  Aligned_cols=268  Identities=14%  Similarity=0.195  Sum_probs=195.4

Q ss_pred             CCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEccc
Q psy4577           5 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVC   84 (384)
Q Consensus         5 p~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~   84 (384)
                      ++.+.+||++|.|.+||+|...+              ..+..+++...+.|+.|...|+++ .||+ +....||++|+.+
T Consensus         7 ~d~~viLvsA~YDhTIRfWqa~t--------------G~C~rTiqh~dsqVNrLeiTpdk~-~LAa-a~~qhvRlyD~~S   70 (311)
T KOG0315|consen    7 TDDPVILVSAGYDHTIRFWQALT--------------GICSRTIQHPDSQVNRLEITPDKK-DLAA-AGNQHVRLYDLNS   70 (311)
T ss_pred             CCCceEEEeccCcceeeeeehhc--------------CeEEEEEecCccceeeEEEcCCcc-hhhh-ccCCeeEEEEccC
Confidence            34556999999999999999987              477888877788999999999999 6654 5567899999987


Q ss_pred             CCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecccc
Q psy4577          85 VEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHAL  160 (384)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~  160 (384)
                      +.                   .+ |.  ..+.+|  ...|.++.|.-+|+-+.    ||+++|||++...+...+...  
T Consensus        71 ~n-------------------p~-Pv--~t~e~h--~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--  124 (311)
T KOG0315|consen   71 NN-------------------PN-PV--ATFEGH--TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--  124 (311)
T ss_pred             CC-------------------CC-ce--eEEecc--CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC--
Confidence            51                   11 21  245555  56799999999999888    999999999875543322111  


Q ss_pred             cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEE
Q psy4577         161 EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK  240 (384)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  240 (384)
                       .|                                     +.++.+.+.+..++...-+..+..|+..    .......+
T Consensus       125 -sp-------------------------------------Vn~vvlhpnQteLis~dqsg~irvWDl~----~~~c~~~l  162 (311)
T KOG0315|consen  125 -SP-------------------------------------VNTVVLHPNQTELISGDQSGNIRVWDLG----ENSCTHEL  162 (311)
T ss_pred             -CC-------------------------------------cceEEecCCcceEEeecCCCcEEEEEcc----CCcccccc
Confidence             11                                     2222333333333333333333322211    11111111


Q ss_pred             e-ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         241 I-NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       241 ~-~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      . .....|.++...|+|. +++.+...|..++|++-.+..    ....+|+..++.|.+.+..+.+|||+ .+||++|.|
T Consensus       163 iPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~----~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssd  236 (311)
T KOG0315|consen  163 IPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQT----ASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSD  236 (311)
T ss_pred             CCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCc----cccceEhhheecccceEEEEEECCCC-cEEEeecCC
Confidence            1 2235789999999996 899999999999999864221    23456788999999999999999998 899999999


Q ss_pred             CcEEEEecCCC-CCCCccccceeeeeccCCcEeEEEEecCCCccccccccc
Q psy4577         320 HTICLWDINAT-PKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLE  369 (384)
Q Consensus       320 g~i~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~  369 (384)
                      .+++||+.++. +       .-..+.+|...+++++||-|+..+.+..+..
T Consensus       237 ktv~iwn~~~~~k-------le~~l~gh~rWvWdc~FS~dg~YlvTassd~  280 (311)
T KOG0315|consen  237 KTVKIWNTDDFFK-------LELVLTGHQRWVWDCAFSADGEYLVTASSDH  280 (311)
T ss_pred             ceEEEEecCCcee-------eEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence            99999999987 4       6677889999999999999999887765543

>KOG0292|consensus

Probab=99.98  E-value=3.7e-31  Score=231.46  Aligned_cols=274  Identities=16%  Similarity=0.272  Sum_probs=213.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|||..+ .+.++--.|.|++||.+-              ..++..+.+|.++|..++|+|+++ +++||++|..|+||
T Consensus        15 lsFHP~rP-wILtslHsG~IQlWDYRM--------------~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVW   78 (1202)
T KOG0292|consen   15 LSFHPKRP-WILTSLHSGVIQLWDYRM--------------GTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVW   78 (1202)
T ss_pred             eecCCCCC-EEEEeecCceeeeehhhh--------------hhHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEE
Confidence            58999998 688888999999999986              478888999999999999999999 88999999999999


Q ss_pred             EcccCCCccc------------------hhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c
Q psy4577          81 SVVCVEPFDD------------------AVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N  138 (384)
Q Consensus        81 d~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d  138 (384)
                      +....+.+..                  .....+.+.++++|+-.......++.||  ...|+|.+|+|....++    |
T Consensus        79 nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH--nHYVMcAqFhptEDlIVSaSLD  156 (1202)
T KOG0292|consen   79 NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH--NHYVMCAQFHPTEDLIVSASLD  156 (1202)
T ss_pred             ecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC--ceEEEeeccCCccceEEEeccc
Confidence            9877643221                  1223446789999998888888899999  66799999999887776    9


Q ss_pred             ceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccc
Q psy4577         139 EEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNY  218 (384)
Q Consensus       139 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  218 (384)
                      .+||+||+.+-+......+ ..+          +.             ..+                     .+      
T Consensus       157 QTVRVWDisGLRkk~~~pg-~~e----------~~-------------~~~---------------------~~------  185 (1202)
T KOG0292|consen  157 QTVRVWDISGLRKKNKAPG-SLE----------DQ-------------MRG---------------------QQ------  185 (1202)
T ss_pred             ceEEEEeecchhccCCCCC-Cch----------hh-------------hhc---------------------cc------
Confidence            9999999976444222111 000          00             000                     00      


Q ss_pred             cCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC
Q psy4577         219 DTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK  298 (384)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  298 (384)
                       ....++   + .........+.+|...|+.++|+|.-+ +++||++|..|++|.++.       +... .+-+.+||..
T Consensus       186 -~~~dLf---g-~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmne-------tKaW-EvDtcrgH~n  251 (1202)
T KOG0292|consen  186 -GNSDLF---G-QTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNE-------TKAW-EVDTCRGHYN  251 (1202)
T ss_pred             -cchhhc---C-CcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEecc-------ccce-eehhhhcccC
Confidence             000000   0 112333566789999999999999997 999999999999999963       2222 2457899999


Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         299 EGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       299 ~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      .|.++-|+|.. .+++|.|+|++|+|||+...+       .+++++.-.+..+.++-||..+..++.
T Consensus       252 nVssvlfhp~q-~lIlSnsEDksirVwDm~kRt-------~v~tfrrendRFW~laahP~lNLfAAg  310 (1202)
T KOG0292|consen  252 NVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRT-------SVQTFRRENDRFWILAAHPELNLFAAG  310 (1202)
T ss_pred             CcceEEecCcc-ceeEecCCCccEEEEeccccc-------ceeeeeccCCeEEEEEecCCcceeeee
Confidence            99999999997 799999999999999999988       999998878889999999988755544

>KOG0286|consensus

Probab=99.98  E-value=1.7e-30  Score=199.74  Aligned_cols=236  Identities=16%  Similarity=0.182  Sum_probs=180.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|.+. ++|+|+-|+...||++++..        .++.......+.||++.+.|+.|-+|+.  |+|+|.|.++.+|
T Consensus       103 CA~sPSg~-~VAcGGLdN~Csiy~ls~~d--------~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalW  171 (343)
T KOG0286|consen  103 CAYSPSGN-FVACGGLDNKCSIYPLSTRD--------AEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALW  171 (343)
T ss_pred             EEECCCCC-eEEecCcCceeEEEeccccc--------ccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEE
Confidence            47999997 89999999999999998632        1223356677899999999999998776  5699999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec-Cceeee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP-DVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |+++++.                        .+.+.||  ...|.++.++| +++.++    |+..++||++.+.....+
T Consensus       172 Die~g~~------------------------~~~f~GH--~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF  225 (343)
T KOG0286|consen  172 DIETGQQ------------------------TQVFHGH--TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF  225 (343)
T ss_pred             EcccceE------------------------EEEecCC--cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEee
Confidence            9998621                        1244466  77899999999 777666    999999999999887777


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      .+|..+                                       |.++.|.|++..+.....|..++.|+...+  ..+
T Consensus       226 ~ghesD---------------------------------------INsv~ffP~G~afatGSDD~tcRlyDlRaD--~~~  264 (343)
T KOG0286|consen  226 EGHESD---------------------------------------INSVRFFPSGDAFATGSDDATCRLYDLRAD--QEL  264 (343)
T ss_pred             cccccc---------------------------------------cceEEEccCCCeeeecCCCceeEEEeecCC--cEE
Confidence            777554                                       334444444444555555555555433111  122


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      .+.....-..+|++++||..|+ +|.+|..|.++.+||.-          ..+....+.||...|+++..+||| ..|+|
T Consensus       265 a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtl----------k~e~vg~L~GHeNRvScl~~s~DG-~av~T  332 (343)
T KOG0286|consen  265 AVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTL----------KGERVGVLAGHENRVSCLGVSPDG-MAVAT  332 (343)
T ss_pred             eeeccCcccCCceeEEEccccc-EEEeeecCCceeEeecc----------ccceEEEeeccCCeeEEEEECCCC-cEEEe
Confidence            2222333457899999999995 99999999999999974          334567899999999999999999 79999


Q ss_pred             eeCCCcEEEEe
Q psy4577         316 ASDDHTICLWD  326 (384)
Q Consensus       316 ~s~Dg~i~iwd  326 (384)
                      ||.|.+++||.
T Consensus       333 gSWDs~lriW~  343 (343)
T KOG0286|consen  333 GSWDSTLRIWA  343 (343)
T ss_pred             cchhHheeecC
Confidence            99999999994

>KOG1407|consensus

Probab=99.98  E-value=6.1e-30  Score=193.70  Aligned_cols=280  Identities=17%  Similarity=0.235  Sum_probs=198.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+-+|. .||+|+.|+++++|++....            ...-....||.+.|-.++|+|..+.++++++.|++|++|
T Consensus        26 v~wn~~g~-~lasgs~dktv~v~n~e~~r------------~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   26 VAWNCDGT-KLASGSFDKTVSVWNLERDR------------FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             EEEcccCc-eeeecccCCceEEEEecchh------------hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            57888997 69999999999999997521            222334579999999999999888899999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+..++..             ..-+...              .-.-+.|+|+|.+++    |..+.+.|.++-+.   ..
T Consensus        93 d~r~~k~~-------------~~i~~~~--------------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~---~~  142 (313)
T KOG1407|consen   93 DIRSGKCT-------------ARIETKG--------------ENINITWSPDGEYIAVGNKDDRITFIDARTYKI---VN  142 (313)
T ss_pred             EeccCcEE-------------EEeeccC--------------cceEEEEcCCCCEEEEecCcccEEEEEecccce---ee
Confidence            99876321             1111111              123588999998887    55555555544222   11


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      ..+.......+.|..+.          ..+.+.+..    ..+.|  ++            |-             .-.+
T Consensus       143 ~~~~~~e~ne~~w~~~n----------d~Fflt~Gl----G~v~I--Ls------------yp-------------sLkp  181 (313)
T KOG1407|consen  143 EEQFKFEVNEISWNNSN----------DLFFLTNGL----GCVEI--LS------------YP-------------SLKP  181 (313)
T ss_pred             hhcccceeeeeeecCCC----------CEEEEecCC----ceEEE--Ee------------cc-------------cccc
Confidence            11111111122222111          001111100    00111  11            11             1112


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      +....+|.....||.|+|+|+ +||+|+.|..+.+||+.          +...+..+..+.-+|..+.||.|| ++||+|
T Consensus       182 v~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~----------ELiC~R~isRldwpVRTlSFS~dg-~~lASa  249 (313)
T KOG1407|consen  182 VQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVD----------ELICERCISRLDWPVRTLSFSHDG-RMLASA  249 (313)
T ss_pred             ccccccCCcceEEEEECCCCc-eEeeccccceeeccChh----------HhhhheeeccccCceEEEEeccCc-ceeecc
Confidence            455678999999999999996 99999999999999985          233456788899999999999999 899999


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccceeeEE-EEEeeeC
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKKKEV-VVTMFAL  384 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~~~~-~~~~~~~  384 (384)
                      |+|..|-|=+++++.       .+..++ +.++-..|+|||..+.++-.|.......++|- .+.+|||
T Consensus       250 SEDh~IDIA~vetGd-------~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  250 SEDHFIDIAEVETGD-------RVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             CccceEEeEecccCC-------eEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence            999999999999998       677665 78899999999999999999987777666665 8899986

>KOG0319|consensus

Probab=99.97  E-value=4.3e-30  Score=220.55  Aligned_cols=330  Identities=18%  Similarity=0.272  Sum_probs=216.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCC-cEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~-~~l~s~s~D~~i~v   79 (384)
                      ++|+|.+ .+||+|+.|+.++|||+..              ..+...+.||.+.|.++.|+|+-. .+|++|+.|+++++
T Consensus       111 ma~~~~g-~LlAtggaD~~v~VWdi~~--------------~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~v  175 (775)
T KOG0319|consen  111 MAFDPTG-TLLATGGADGRVKVWDIKN--------------GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRV  175 (775)
T ss_pred             EEEcCCC-ceEEeccccceEEEEEeeC--------------CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEE
Confidence            4789999 5999999999999999986              467777888888888888887754 25777888888888


Q ss_pred             EEcccCCC-c---------------------------------------------------------cc-------hhhe
Q psy4577          80 LSVVCVEP-F---------------------------------------------------------DD-------AVEE   94 (384)
Q Consensus        80 wd~~~~~~-~---------------------------------------------------------~~-------~~~~   94 (384)
                      ||+..... .                                                         ..       ....
T Consensus       176 wnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~T  255 (775)
T KOG0319|consen  176 WNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIIT  255 (775)
T ss_pred             EEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEE
Confidence            88763310 0                                                         00       0000


Q ss_pred             eeeeeeEEEeccCCcccc-------------------------------------------cceeeeeeccCeeEEEEec
Q psy4577          95 RVINEEYKIWKKNTPFLY-------------------------------------------DLVMTHALEWPSLTAQWLP  131 (384)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~v~~~~~~~  131 (384)
                      ....+.++.|+..+..+.                                           +.+.  .+.+.|..++|..
T Consensus       256 aG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv--G~ndEI~Dm~~lG  333 (775)
T KOG0319|consen  256 AGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV--GYNDEILDMKFLG  333 (775)
T ss_pred             ecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhc--CCchhheeeeecC
Confidence            001233444443321110                                           0111  1244566666653


Q ss_pred             -Cceeee----cceeeeeccccccccceeecccccccceeee-eccC-CCCCCCCccceeEEEEeeecc-------CCCC
Q psy4577         132 -DVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ-WLPD-VTRPEGKDYSIHRLILGTHTS-------DEQN  197 (384)
Q Consensus       132 -~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~  197 (384)
                       +.+.++    .+.+|+++..+..+. ++.+|...  .+++. |... .....+++..+..+.+.....       ...+
T Consensus       334 ~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~--vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH  410 (775)
T KOG0319|consen  334 PEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEA--VLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH  410 (775)
T ss_pred             CccceEEEEeCCCceEEEecCCCceE-EEeCchhh--eeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc
Confidence             334444    677788877666554 45555543  23333 2111 123334444443333311111       0122


Q ss_pred             eEEEEEeecCCCCcc-cccccccCcCCCCCCccCCCCceeEE-----EEeecCCceEEEEEcCCCCcEEEEEeCCCcEEE
Q psy4577         198 HLLIASVQLPNEDAQ-FDASNYDTDKGDFGGFGSVSGKIEIE-----IKINHEGEVNRARYMPQNPCVIATKTPSSDVLV  271 (384)
Q Consensus       198 ~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~i  271 (384)
                      .-.+..+.++..+.. +....-|...+.|......+..+++.     ....|...|++|+++|+.+ ++||||.|.+.+|
T Consensus       411 ~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKi  489 (775)
T KOG0319|consen  411 TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKI  489 (775)
T ss_pred             ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceee
Confidence            223444444433333 33445677777775544222222111     2357999999999999996 9999999999999


Q ss_pred             EecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEe
Q psy4577         272 FDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE  351 (384)
Q Consensus       272 wd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~  351 (384)
                      |++.          ......++.||...|.++.|+|.. +.+||+|.|++|+||.+.+..       ++++|.||...|.
T Consensus       490 W~le----------~~~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fS-------ClkT~eGH~~aVl  551 (775)
T KOG0319|consen  490 WDLE----------QLRLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFS-------CLKTFEGHTSAVL  551 (775)
T ss_pred             eccc----------CceEEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccce-------eeeeecCccceeE
Confidence            9984          334577999999999999999997 899999999999999999999       9999999999999


Q ss_pred             EEEEecCCCccccccccc
Q psy4577         352 LELIERLTKKADPVCTLE  369 (384)
Q Consensus       352 ~~~~sp~~~~~~~~c~~~  369 (384)
                      -+.|-..|+++.++|..+
T Consensus       552 ra~F~~~~~qliS~~adG  569 (775)
T KOG0319|consen  552 RASFIRNGKQLISAGADG  569 (775)
T ss_pred             eeeeeeCCcEEEeccCCC
Confidence            999999999999988765

>KOG0266|consensus

Probab=99.97  E-value=2.9e-30  Score=228.26  Aligned_cols=266  Identities=18%  Similarity=0.255  Sum_probs=204.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      +.|+|+|. .|++++.|+.+++|+.....            ..+...+.+|...|++++|+|++. ++++++.|++||+|
T Consensus       165 ~~fs~~g~-~l~~~~~~~~i~~~~~~~~~------------~~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  165 VDFSPDGR-ALAAASSDGLIRIWKLEGIK------------SNLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIW  230 (456)
T ss_pred             EEEcCCCC-eEEEccCCCcEEEeeccccc------------chhhccccccccceeeeEECCCCc-EEEEecCCceEEEe
Confidence            46999998 59999999999999995421            135566689999999999999999 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+...                       ....+++.+|  ...|++++|+|+++.++    |++|++||+.+..+...+.
T Consensus       231 d~~~~-----------------------~~~~~~l~gH--~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~  285 (456)
T KOG0266|consen  231 DLKDD-----------------------GRNLKTLKGH--STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK  285 (456)
T ss_pred             eccCC-----------------------CeEEEEecCC--CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee
Confidence            99331                       1122456677  77899999999997776    9999999998866655555


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .|..                                       .|..+.+++++..+....+|...+.|+.......  .
T Consensus       286 ~hs~---------------------------------------~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--~  324 (456)
T KOG0266|consen  286 GHSD---------------------------------------GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL--C  324 (456)
T ss_pred             ccCC---------------------------------------ceEEEEECCCCCEEEEcCCCccEEEEECCCCcee--e
Confidence            5533                                       3555566666666666666766666644222111  2


Q ss_pred             EEEEeecCC--ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC---ceEEEEeCCCCCC
Q psy4577         237 IEIKINHEG--EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK---EGYGLSWNPSLNG  311 (384)
Q Consensus       237 ~~~~~~~~~--~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~i~~~~~s~~~~~  311 (384)
                      ......+..  .++++.|+|++. ++++++.|+.+++||++        .+.  ....+.+|..   .+.+...++.+ .
T Consensus       325 ~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~  392 (456)
T KOG0266|consen  325 LKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLR--------SGK--SVGTYTGHSNLVRCIFSPTLSTGG-K  392 (456)
T ss_pred             eecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEcc--------CCc--ceeeecccCCcceeEecccccCCC-C
Confidence            334444444  499999999996 99999999999999996        232  3446777766   34455667787 7


Q ss_pred             eEEEeeCCCcEEEEecCCCCCCCccccceeeeecc-CCcEeEEEEecCCCccccc
Q psy4577         312 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGH-TAVVELELIERLTKKADPV  365 (384)
Q Consensus       312 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~~  365 (384)
                      ++++|+.|+.|++||+.++.       .+..+.+| ...|..+.|+|..+.+++.
T Consensus       393 ~i~sg~~d~~v~~~~~~s~~-------~~~~l~~h~~~~~~~~~~~~~~~~~~s~  440 (456)
T KOG0266|consen  393 LIYSGSEDGSVYVWDSSSGG-------ILQRLEGHSKAAVSDLSSHPTENLIASS  440 (456)
T ss_pred             eEEEEeCCceEEEEeCCccc-------hhhhhcCCCCCceeccccCCCcCeeeec
Confidence            99999999999999999987       89999999 8999999999999977655

>KOG0264|consensus

Probab=99.97  E-value=5.8e-30  Score=208.22  Aligned_cols=245  Identities=20%  Similarity=0.300  Sum_probs=185.2

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      ++-|..+.++||++..+.|.|||..+.......  .  +....-..+.||.+.=++|+|++.....|++++.|++|++||
T Consensus       131 RymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~--~--~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwd  206 (422)
T KOG0264|consen  131 RYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA--S--GECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWD  206 (422)
T ss_pred             hhCCCCCcEEEecCCCCCEEEEEeccCCCcccc--c--ccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEe
Confidence            467888889999999999999999763211100  0  012223456899988899999999888899999999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccc--cceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccce
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLY--DLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDL  154 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~  154 (384)
                      +.....                   ..+.+.  ..+.+|  ...|..++|++-...++     |+.+.|||.+.. .-. 
T Consensus       207 i~~~~~-------------------~~~~~~p~~~~~~h--~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~-  263 (422)
T KOG0264|consen  207 INAESK-------------------EDKVVDPKTIFSGH--EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSK-  263 (422)
T ss_pred             cccccc-------------------CCccccceEEeecC--CcceehhhccccchhhheeecCCCeEEEEEcCCC-CCC-
Confidence            976411                   111111  233344  78889999999876665     788888887642 100 


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                                                                                                      
T Consensus       264 --------------------------------------------------------------------------------  263 (422)
T KOG0264|consen  264 --------------------------------------------------------------------------------  263 (422)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                       ......+|.+.|+|++|+|.+..+|||||.|++|++||+|         ....++.++.+|...|.+|.|||+.+..||
T Consensus       264 -~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlR---------nL~~~lh~~e~H~dev~~V~WSPh~etvLA  333 (422)
T KOG0264|consen  264 -PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLR---------NLNKPLHTFEGHEDEVFQVEWSPHNETVLA  333 (422)
T ss_pred             -CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeech---------hcccCceeccCCCcceEEEEeCCCCCceeE
Confidence             0122237999999999999988999999999999999997         344578899999999999999999888999


Q ss_pred             EeeCCCcEEEEecCCCCCCC-------ccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         315 SASDDHTICLWDINATPKEN-------RVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                      |++.|+++.|||+..-.+++       ..+.++-+-.||...|+++.|+|..+...
T Consensus       334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I  389 (422)
T KOG0264|consen  334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTI  389 (422)
T ss_pred             ecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEE
Confidence            99999999999997643221       11224555678999999999999999543

>KOG0319|consensus

Probab=99.97  E-value=1.2e-29  Score=217.82  Aligned_cols=271  Identities=14%  Similarity=0.123  Sum_probs=209.0

Q ss_pred             CCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEc
Q psy4577           3 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSV   82 (384)
Q Consensus         3 fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~   82 (384)
                      +.|+.+ .||.++.-+.+++|+..+.               ....+.||++.|.+++...+|- +|+|||.|+++++|.+
T Consensus       332 lG~e~~-~laVATNs~~lr~y~~~~~---------------~c~ii~GH~e~vlSL~~~~~g~-llat~sKD~svilWr~  394 (775)
T KOG0319|consen  332 LGPEES-HLAVATNSPELRLYTLPTS---------------YCQIIPGHTEAVLSLDVWSSGD-LLATGSKDKSVILWRL  394 (775)
T ss_pred             cCCccc-eEEEEeCCCceEEEecCCC---------------ceEEEeCchhheeeeeecccCc-EEEEecCCceEEEEEe
Confidence            356665 7999999999999988762               2236789999999999666665 8999999999999998


Q ss_pred             ccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeec
Q psy4577          83 VCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~  157 (384)
                      +..                    .......+...+|  ...|.+++++..+..++     |.++++|++....-...   
T Consensus       395 ~~~--------------------~~~~~~~a~~~gH--~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~---  449 (775)
T KOG0319|consen  395 NNN--------------------CSKSLCVAQANGH--TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF---  449 (775)
T ss_pred             cCC--------------------cchhhhhhhhccc--ccccceeeecccCccEEEEecCCceEEEecCCCcccccc---
Confidence            442                    1122233445566  77888999977775444     99999999865111100   


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI  237 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  237 (384)
                       .   +.+..+.                       -...+.--|.++++.+++..+...+.|...+.|..    +.....
T Consensus       450 -~---~~~~~~~-----------------------t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l----e~~~l~  498 (775)
T KOG0319|consen  450 -P---IVLTCRY-----------------------TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL----EQLRLL  498 (775)
T ss_pred             -c---ceehhhH-----------------------HHHhhcccccceEecCCCceEEecccccceeeecc----cCceEE
Confidence             0   0000000                       00011124778888899999999999999988744    233346


Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      ..+.+|...|.+|.|+|..+ ++||+|.|++|+||.+.        +..  .+.+|.||...|..+.|-.+| ..|+||+
T Consensus       499 ~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is--------~fS--ClkT~eGH~~aVlra~F~~~~-~qliS~~  566 (775)
T KOG0319|consen  499 GVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSIS--------TFS--CLKTFEGHTSAVLRASFIRNG-KQLISAG  566 (775)
T ss_pred             EEeeCCccceEEEEeccccc-eeEeccCCceEEEEEec--------cce--eeeeecCccceeEeeeeeeCC-cEEEecc
Confidence            67889999999999999996 99999999999999996        444  567999999999999999998 7999999


Q ss_pred             CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         318 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      .||-|++|+++++.       ++.++.+|...|++++-+|......+.
T Consensus       567 adGliKlWnikt~e-------C~~tlD~H~DrvWaL~~~~~~~~~~tg  607 (775)
T KOG0319|consen  567 ADGLIKLWNIKTNE-------CEMTLDAHNDRVWALSVSPLLDMFVTG  607 (775)
T ss_pred             CCCcEEEEeccchh-------hhhhhhhccceeEEEeecCccceeEec
Confidence            99999999999999       999999999999999999998854433

>KOG0313|consensus

Probab=99.97  E-value=2.4e-29  Score=200.02  Aligned_cols=278  Identities=18%  Similarity=0.206  Sum_probs=196.6

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCC--cEEEEEecCCeEEEEEcccCC
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP--WVICSVSEDNIMQILSVVCVE   86 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~--~~l~s~s~D~~i~vwd~~~~~   86 (384)
                      ..+.||++||.++|||.+.               +..+...||.++|.+++|.-..+  ..++++|.|.++++|..+.++
T Consensus       116 ~~IltgsYDg~~riWd~~G---------------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  116 KWILTGSYDGTSRIWDLKG---------------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             ceEEEeecCCeeEEEecCC---------------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence            3699999999999999985               77888899999999999843322  358899999999999987652


Q ss_pred             CccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccc--cceeecccc
Q psy4577          87 PFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFL--YDLVMTHAL  160 (384)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~--~~~~~~~~~  160 (384)
                      ..                    ....+...||  ..+|.++.-.++|.+++    |.++++|+......  ++-......
T Consensus       181 ~~--------------------~~~~~~~~GH--k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr  238 (423)
T KOG0313|consen  181 NK--------------------VKALKVCRGH--KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR  238 (423)
T ss_pred             hh--------------------hhHHhHhccc--ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhh
Confidence            11                    0111223366  78899999999999887    99999999322111  111000000


Q ss_pred             cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEE
Q psy4577         161 EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK  240 (384)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  240 (384)
                      .          .........-....+.+..|.      -.+.++.+++ ...+....||...+.|+...   +..  ...
T Consensus       239 k----------~~~~~~~~~~r~P~vtl~GHt------~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet---g~~--~~~  296 (423)
T KOG0313|consen  239 K----------KQKREKEGGTRTPLVTLEGHT------EPVSSVVWSD-ATVIYSVSWDHTIKVWDLET---GGL--KST  296 (423)
T ss_pred             h----------hhhhhhcccccCceEEecccc------cceeeEEEcC-CCceEeecccceEEEEEeec---ccc--eee
Confidence            0          000000000001112233222      2466666665 66677788898888774421   111  111


Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      ..-+..++++.++|.. .+||+|+.|..||+||-|..       .......+|.||.+.|.++.|+|..+..|+||+.|+
T Consensus       297 ~~~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~-------~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  297 LTTNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTG-------DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             eecCcceeEeeccccc-ceeeecCCCCceeecCCCCC-------CCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence            2346779999999988 59999999999999998842       223456789999999999999999889999999999


Q ss_pred             cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCC
Q psy4577         321 TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLT  359 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~  359 (384)
                      ++++||+++.+.      ++..+.+|...|.++.|+.-+
T Consensus       369 t~klWDvRS~k~------plydI~~h~DKvl~vdW~~~~  401 (423)
T KOG0313|consen  369 TVKLWDVRSTKA------PLYDIAGHNDKVLSVDWNEGG  401 (423)
T ss_pred             eEEEEEeccCCC------cceeeccCCceEEEEeccCCc
Confidence            999999998764      889999999999999998643

>KOG0291|consensus

Probab=99.97  E-value=2.7e-28  Score=210.18  Aligned_cols=342  Identities=15%  Similarity=0.165  Sum_probs=233.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|||+|. ++|.|. .+.+.||......+      .+-.|..+..++.||-+.|++|.|+.|.+ +|++||.|.++|+|
T Consensus       102 i~fSPng~-~fav~~-gn~lqiw~~P~~~~------~~~~pFvl~r~~~g~fddi~si~Ws~DSr-~l~~gsrD~s~rl~  172 (893)
T KOG0291|consen  102 IKFSPNGK-FFAVGC-GNLLQIWHAPGEIK------NEFNPFVLHRTYLGHFDDITSIDWSDDSR-LLVTGSRDLSARLF  172 (893)
T ss_pred             EEECCCCc-EEEEEe-cceeEEEecCcchh------cccCcceEeeeecCCccceeEEEeccCCc-eEEeccccceEEEE
Confidence            57999997 677765 56799999865321      12345677788899999999999999999 88899999999999


Q ss_pred             EcccCCCcc--------------------chhheeeeeeeEEEeccCCc-----------------------------cc
Q psy4577          81 SVVCVEPFD--------------------DAVEERVINEEYKIWKKNTP-----------------------------FL  111 (384)
Q Consensus        81 d~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~-----------------------------~~  111 (384)
                      +++..+.+.                    .....-..++.+.+|....+                             ..
T Consensus       173 ~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~  252 (893)
T KOG0291|consen  173 GVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIF  252 (893)
T ss_pred             EeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceE
Confidence            997653210                    00011123456666665411                             01


Q ss_pred             ccceeeeeec---cCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccce-
Q psy4577         112 YDLVMTHALE---WPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSI-  183 (384)
Q Consensus       112 ~~~~~~~~~~---~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  183 (384)
                      +....-|-..   ..+.+++|++....++    .|.+.++.+..-.+...+.-..  .+..++.++..+...+-+...+ 
T Consensus       253 ~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~--~~I~t~~~N~tGDWiA~g~~klg  330 (893)
T KOG0291|consen  253 WYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD--QKILTVSFNSTGDWIAFGCSKLG  330 (893)
T ss_pred             EEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc--ceeeEEEecccCCEEEEcCCccc
Confidence            1111123222   5688999999888777    7778888776644333222211  2344455544333111111111 


Q ss_pred             eEEEEeeec----c-CCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCc
Q psy4577         184 HRLILGTHT----S-DEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPC  258 (384)
Q Consensus       184 ~~~~~~~~~----~-~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  258 (384)
                      +.++..-+.    - +..+...+.++.+++++..+.+...|...+.|    +....++...+..|+..|+.+.|+..+ +
T Consensus       331 QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW----n~~SgfC~vTFteHts~Vt~v~f~~~g-~  405 (893)
T KOG0291|consen  331 QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVW----NTQSGFCFVTFTEHTSGVTAVQFTARG-N  405 (893)
T ss_pred             eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEE----eccCceEEEEeccCCCceEEEEEEecC-C
Confidence            111111111    1 23456789999999999999999999998876    445567888999999999999999999 5


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCC---------------CCCC-------------------CccceeeecCCCCceEEEE
Q psy4577         259 VIATKTPSSDVLVFDYTKHPSKP---------------DPNG-------------------ECHPDLRLRGHQKEGYGLS  304 (384)
Q Consensus       259 ~l~s~s~dg~i~iwd~~~~~~~~---------------~~~~-------------------~~~~~~~~~~h~~~i~~~~  304 (384)
                      .++++|-||+||.||+....+-.               ++++                   ..+.+-.+.||.+||.+++
T Consensus       406 ~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~  485 (893)
T KOG0291|consen  406 VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS  485 (893)
T ss_pred             EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE
Confidence            99999999999999997543211               1111                   2233446789999999999


Q ss_pred             eCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         305 WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       305 ~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      |+|++ ..|||+|.|.+|++||+-....      .+-++. +...+++++|+|+|+.++...
T Consensus       486 f~~~~-~~LaS~SWDkTVRiW~if~s~~------~vEtl~-i~sdvl~vsfrPdG~elaVaT  539 (893)
T KOG0291|consen  486 FSPDG-SLLASGSWDKTVRIWDIFSSSG------TVETLE-IRSDVLAVSFRPDGKELAVAT  539 (893)
T ss_pred             Ecccc-CeEEeccccceEEEEEeeccCc------eeeeEe-eccceeEEEEcCCCCeEEEEE
Confidence            99999 6999999999999999977641      333333 667899999999999876553

>KOG0291|consensus

Probab=99.97  E-value=3.1e-29  Score=215.86  Aligned_cols=270  Identities=15%  Similarity=0.246  Sum_probs=186.6

Q ss_pred             CCCCCCCCceEEEeeCC-CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      ++|+..|+ .||.|+.. |++.||++..+              ..+...+||...+++++++|||+ ++|||+.||.|||
T Consensus       313 ~~~N~tGD-WiA~g~~klgQLlVweWqsE--------------sYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKv  376 (893)
T KOG0291|consen  313 VSFNSTGD-WIAFGCSKLGQLLVWEWQSE--------------SYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKV  376 (893)
T ss_pred             EEecccCC-EEEEcCCccceEEEEEeecc--------------ceeeeccccccceeeEEECCCCc-EEEeccCCCcEEE
Confidence            35778887 68887664 89999999862              45666789999999999999999 8999999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      ||...+                        +..-++..|  ...|.+++|+..|+.++    ||+||.||+..-+.+..+
T Consensus       377 Wn~~Sg------------------------fC~vTFteH--ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf  430 (893)
T KOG0291|consen  377 WNTQSG------------------------FCFVTFTEH--TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF  430 (893)
T ss_pred             EeccCc------------------------eEEEEeccC--CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence            998775                        222244445  56789999999998887    999999999876665544


Q ss_pred             eccc-ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         156 MTHA-LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       156 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      .... ....|++++.  .+.          .+..|.+.   .-.+.++++.                .          |+
T Consensus       431 t~P~p~QfscvavD~--sGe----------lV~AG~~d---~F~IfvWS~q----------------T----------Gq  469 (893)
T KOG0291|consen  431 TSPEPIQFSCVAVDP--SGE----------LVCAGAQD---SFEIFVWSVQ----------------T----------GQ  469 (893)
T ss_pred             cCCCceeeeEEEEcC--CCC----------EEEeeccc---eEEEEEEEee----------------c----------Ce
Confidence            3321 1111222211  111          11122211   1112333332                1          22


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                       .+..+.+|+++|.+++|+|.+. .||+||-|.+||+||+-..      .+..+   ++ .+...+..++|+|+| .-||
T Consensus       470 -llDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s------~~~vE---tl-~i~sdvl~vsfrPdG-~ela  536 (893)
T KOG0291|consen  470 -LLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS------SGTVE---TL-EIRSDVLAVSFRPDG-KELA  536 (893)
T ss_pred             -eeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeecc------Cceee---eE-eeccceeEEEEcCCC-CeEE
Confidence             2566779999999999999995 9999999999999998521      12222   23 355679999999999 7999


Q ss_pred             EeeCCCcEEEEecCCCCCCCc-----------cccceeee--eccCCcEeEEEEecCCCcccccc
Q psy4577         315 SASDDHTICLWDINATPKENR-----------VIDAKTIF--TGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~~~~~~~-----------~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      .+..||.|.+||++.+.+.+.           ...-..+-  ..-....+.+++|+||..+.+..
T Consensus       537 VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG  601 (893)
T KOG0291|consen  537 VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG  601 (893)
T ss_pred             EEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC
Confidence            999999999999987642100           00000000  11235789999999999777653

>KOG0277|consensus

Probab=99.97  E-value=8.3e-29  Score=186.89  Aligned_cols=235  Identities=16%  Similarity=0.251  Sum_probs=177.2

Q ss_pred             CCCCCCCCceEEEee-------CCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEec
Q psy4577           1 VQWSPHNETILASSG-------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE   73 (384)
Q Consensus         1 v~fsp~~~~~lat~~-------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~   73 (384)
                      ++|||--++.||.+.       ..|++.|-++...+           .......+ .-.+.+.+++|+++....+++++.
T Consensus        14 vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~-----------gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~G   81 (311)
T KOG0277|consen   14 VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK-----------GIQECQSY-DTEDGLFDVAWSENHENQVIAASG   81 (311)
T ss_pred             eEecccccchhheeehhhcccccCceEEEEecCCCC-----------CeEEEEee-ecccceeEeeecCCCcceEEEEec
Confidence            579998766676653       26789999886311           01222222 336789999999998888999999


Q ss_pred             CCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccc
Q psy4577          74 DNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNT  148 (384)
Q Consensus        74 D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~  148 (384)
                      ||++++||.....            ..+.           .+..|  ...|.++.|++..+..+     |++|++|+.+.
T Consensus        82 DGSLrl~d~~~~s------------~Pi~-----------~~kEH--~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   82 DGSLRLFDLTMPS------------KPIH-----------KFKEH--KREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             CceEEEeccCCCC------------cchh-----------HHHhh--hhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            9999999953320            1112           22333  45688888888765544     78888876533


Q ss_pred             ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCc
Q psy4577         149 PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGF  228 (384)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~  228 (384)
                      +..                                                                             
T Consensus       137 ~~S-----------------------------------------------------------------------------  139 (311)
T KOG0277|consen  137 PNS-----------------------------------------------------------------------------  139 (311)
T ss_pred             Ccc-----------------------------------------------------------------------------
Confidence            211                                                                             


Q ss_pred             cCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCC
Q psy4577         229 GSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPS  308 (384)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~  308 (384)
                              +..+.+|+..|....|+|..+++++++|.|+++++||++.       .  .+.+ .+..|...|.++.|+.-
T Consensus       140 --------v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~-------~--gk~~-~i~ah~~Eil~cdw~ky  201 (311)
T KOG0277|consen  140 --------VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS-------P--GKFM-SIEAHNSEILCCDWSKY  201 (311)
T ss_pred             --------eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC-------C--Ccee-EEEeccceeEeeccccc
Confidence                    2334578889999999999889999999999999999973       2  2233 48889999999999987


Q ss_pred             CCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccce
Q psy4577         309 LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKK  373 (384)
Q Consensus       309 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~  373 (384)
                      .+++|+||+.|+.|+.||+++.+.      ++..+.+|.-+|..+.|||-...+.+.|+.+..-.
T Consensus       202 ~~~vl~Tg~vd~~vr~wDir~~r~------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r  260 (311)
T KOG0277|consen  202 NHNVLATGGVDNLVRGWDIRNLRT------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR  260 (311)
T ss_pred             CCcEEEecCCCceEEEEehhhccc------cceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence            778999999999999999998764      89999999999999999999988887776655443

>KOG0264|consensus

Probab=99.97  E-value=2.9e-29  Score=204.15  Aligned_cols=234  Identities=70%  Similarity=1.157  Sum_probs=210.2

Q ss_pred             ecceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccC-CCCeEEEEEeecCCCCccccc
Q psy4577         137 INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD-EQNHLLIASVQLPNEDAQFDA  215 (384)
Q Consensus       137 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~  215 (384)
                      ++..+++|..+.+.+|+++.++.++||+++++|.|+........+..+++++|+++.. ++|++.|.++.++........
T Consensus        16 i~Eey~~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~~~~~~   95 (422)
T KOG0264|consen   16 INEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDDAQFED   95 (422)
T ss_pred             ccchhhHHhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCccccccc
Confidence            3555666666666679999999999999999999998878899999999999999995 899999999999998888888


Q ss_pred             ccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC
Q psy4577         216 SNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG  295 (384)
Q Consensus       216 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  295 (384)
                      ..++...+.+++++...+++.+...+.|.+.|+.+.+.|++++++|+++..+.|+|||+..++..+...+.+.|-..+.|
T Consensus        96 ~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g  175 (422)
T KOG0264|consen   96 KHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG  175 (422)
T ss_pred             ccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe
Confidence            99999998888887888899999999999999999999999999999999999999999988877665667788889999


Q ss_pred             CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccc
Q psy4577         296 HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEK  370 (384)
Q Consensus       296 h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~  370 (384)
                      |.+.-++++|++..+..|++++.|++|++||+.....+.+.+.+...+.+|...|.+++|||....+.+.|..+.
T Consensus       176 H~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~  250 (422)
T KOG0264|consen  176 HEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG  250 (422)
T ss_pred             ecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence            999999999999877899999999999999999988777788899999999999999999999998887765543

>KOG0285|consensus

Probab=99.97  E-value=1.7e-28  Score=193.89  Aligned_cols=275  Identities=19%  Similarity=0.240  Sum_probs=204.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |++.|-++ .||||+.|++|+|||+.+              .++..++.||...|..+++|+--+ ++++++.|+.|+.|
T Consensus       157 vavdP~n~-wf~tgs~DrtikIwDlat--------------g~LkltltGhi~~vr~vavS~rHp-YlFs~gedk~VKCw  220 (460)
T KOG0285|consen  157 VAVDPGNE-WFATGSADRTIKIWDLAT--------------GQLKLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVKCW  220 (460)
T ss_pred             EeeCCCce-eEEecCCCceeEEEEccc--------------CeEEEeecchhheeeeeeecccCc-eEEEecCCCeeEEE
Confidence            46788876 899999999999999997              588999999999999999999999 66799999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |++..+.+                        +-+.||  -..|+++..+|.-..++    |.++|+||+++......+.
T Consensus       221 DLe~nkvI------------------------R~YhGH--lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~  274 (460)
T KOG0285|consen  221 DLEYNKVI------------------------RHYHGH--LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS  274 (460)
T ss_pred             echhhhhH------------------------HHhccc--cceeEEEeccccceeEEecCCcceEEEeeecccceEEEec
Confidence            99874221                        122344  67899999999998888    8999999998877666666


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      +|...                                       +.++.+-+.+.++.....|...+.|+.    .....
T Consensus       275 GH~~~---------------------------------------V~~V~~~~~dpqvit~S~D~tvrlWDl----~agkt  311 (460)
T KOG0285|consen  275 GHTNP---------------------------------------VASVMCQPTDPQVITGSHDSTVRLWDL----RAGKT  311 (460)
T ss_pred             CCCCc---------------------------------------ceeEEeecCCCceEEecCCceEEEeee----ccCce
Confidence            55433                                       223333333445555566666665533    12223


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ...+..|+..|++++.+|.. +.||+++.| .|+-|++.        .+..  +..+.+|.+-|++++.+.|+  ++++|
T Consensus       312 ~~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p--------~g~f--~~nlsgh~~iintl~~nsD~--v~~~G  377 (460)
T KOG0285|consen  312 MITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLP--------EGEF--LQNLSGHNAIINTLSVNSDG--VLVSG  377 (460)
T ss_pred             eEeeecccceeeEEecCCch-hhhhccCCc-cceeccCC--------ccch--hhccccccceeeeeeeccCc--eEEEc
Confidence            55667899999999999988 699999877 58999986        3433  44689999999999999995  89999


Q ss_pred             eCCCcEEEEecCCCCCCCcc--ccceeeeeccCCcEeEEEEecCCCcccccccccccceee
Q psy4577         317 SDDHTICLWDINATPKENRV--IDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKKK  375 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~~  375 (384)
                      +..|.+..||.+++-..+..  +.....+. ....|++.+|-..+..+.++-.....+..|
T Consensus       378 ~dng~~~fwdwksg~nyQ~~~t~vqpGSl~-sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  378 GDNGSIMFWDWKSGHNYQRGQTIVQPGSLE-SEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             CCceEEEEEecCcCcccccccccccCCccc-cccceeEEeecccCceEEeccCCcceEEEe
Confidence            99999999999988622111  11111111 235689999988888777654444444443

>KOG0647|consensus

Probab=99.96  E-value=3.4e-28  Score=188.02  Aligned_cols=270  Identities=16%  Similarity=0.277  Sum_probs=185.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|||....+|+.||.|++||+|+++..+.            ..-.....|.++|.+++|+.+|. .+++|+.|+.+++|
T Consensus        33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~------------~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQ------------LVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLW   99 (347)
T ss_pred             eEeccccCceEEecccCCceEEEEEecCCc------------ccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEE
Confidence            589997667888999999999999986331            11134457889999999999998 88899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCce--eee----cceeeeeccccccccce
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT--RVI----NEEYKIWKKNTPFLYDL  154 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~----d~~v~~w~~~~~~~~~~  154 (384)
                      |+.+++..                         .+..|  ..+|.++.|-+...  .++    |.+++.||.+...... 
T Consensus       100 DL~S~Q~~-------------------------~v~~H--d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~-  151 (347)
T KOG0647|consen  100 DLASGQVS-------------------------QVAAH--DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA-  151 (347)
T ss_pred             EccCCCee-------------------------eeeec--ccceeEEEEecCCCcceeEecccccceeecccCCCCeee-
Confidence            99886221                         22334  77888999988775  444    9999999998654432 


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                        +..+...+.+++.....            +++++.    .+.+.+..+.-++              .++         
T Consensus       152 --t~~LPeRvYa~Dv~~pm------------~vVata----~r~i~vynL~n~~--------------te~---------  190 (347)
T KOG0647|consen  152 --TLQLPERVYAADVLYPM------------AVVATA----ERHIAVYNLENPP--------------TEF---------  190 (347)
T ss_pred             --eeeccceeeehhccCce------------eEEEec----CCcEEEEEcCCCc--------------chh---------
Confidence              22222223333221111            111111    2233444443111              000         


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC---------ceEEEEe
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK---------EGYGLSW  305 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~i~~~~~  305 (384)
                        .......+-.++||+..++.+ .+|.|+.+|.+.|..+..        +....-.+|+.|+.         +|++|+|
T Consensus       191 --k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~--------~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F  259 (347)
T KOG0647|consen  191 --KRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDD--------PNPKDNFTFKCHRSTNSVNDDVYAVNSIAF  259 (347)
T ss_pred             --hhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCC--------CCccCceeEEEeccCCCCCCceEEecceEe
Confidence              001112344588999999886 568899999999999863        22233346666762         5788999


Q ss_pred             CCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccccccc
Q psy4577         306 NPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKA  371 (384)
Q Consensus       306 s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~  371 (384)
                      +|.. +.|+|+|.||++.+||-....       .+.+..-|..+|++.+|+.+|...+=.-..+|.
T Consensus       260 hP~h-gtlvTaGsDGtf~FWDkdar~-------kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWS  317 (347)
T KOG0647|consen  260 HPVH-GTLVTAGSDGTFSFWDKDART-------KLKTSETHPQPITCCSFNRNGSIFAYALGYDWS  317 (347)
T ss_pred             eccc-ceEEEecCCceEEEecchhhh-------hhhccCcCCCccceeEecCCCCEEEEEeecccc
Confidence            9987 799999999999999998877       777888899999999999999966544333443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=2.2e-27  Score=225.30  Aligned_cols=287  Identities=13%  Similarity=0.177  Sum_probs=185.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. +||+|+.|+.|+|||........     . ........+.+ ...|.+++|+|....+|++++.||+|++|
T Consensus       489 i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~-----~-~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lW  560 (793)
T PLN00181        489 IGFDRDGE-FFATAGVNKKIKIFECESIIKDG-----R-DIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVW  560 (793)
T ss_pred             EEECCCCC-EEEEEeCCCEEEEEECCcccccc-----c-ccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence            47999997 89999999999999986411000     0 00011222333 45899999998654488999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec-Cceeee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP-DVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |+.+++.             +           ..+.+|  ...|.+++|+| ++..++    |+++++||+........+
T Consensus       561 d~~~~~~-------------~-----------~~~~~H--~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        561 DVARSQL-------------V-----------TEMKEH--EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             ECCCCeE-------------E-----------EEecCC--CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            9976411             1           122344  56799999997 566666    899999999765443322


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      ..+   ....++.|.+.                                    ++..+.....|.....|+..   ....
T Consensus       615 ~~~---~~v~~v~~~~~------------------------------------~g~~latgs~dg~I~iwD~~---~~~~  652 (793)
T PLN00181        615 KTK---ANICCVQFPSE------------------------------------SGRSLAFGSADHKVYYYDLR---NPKL  652 (793)
T ss_pred             ecC---CCeEEEEEeCC------------------------------------CCCEEEEEeCCCeEEEEECC---CCCc
Confidence            211   11222333211                                    11111122222222222110   1111


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      ......+|...|.++.|. ++ .+|++++.|++|++||++....    .....++..+.+|...+.+++|+|++ .+|++
T Consensus       653 ~~~~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~----~~~~~~l~~~~gh~~~i~~v~~s~~~-~~las  725 (793)
T PLN00181        653 PLCTMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSIS----GINETPLHSFMGHTNVKNFVGLSVSD-GYIAT  725 (793)
T ss_pred             cceEecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCcc----ccCCcceEEEcCCCCCeeEEEEcCCC-CEEEE
Confidence            234456899999999997 45 3899999999999999863210    01224567899999999999999998 79999


Q ss_pred             eeCCCcEEEEecCCCCCC----Cccccce--eeeeccCCcEeEEEEecCCCcccccccccc
Q psy4577         316 ASDDHTICLWDINATPKE----NRVIDAK--TIFTGHTAVVELELIERLTKKADPVCTLEK  370 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~----~~~~~~~--~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~  370 (384)
                      |+.|+.|++|+.......    ......+  .....|...|.+++|+|++..+++.+....
T Consensus       726 gs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~  786 (793)
T PLN00181        726 GSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN  786 (793)
T ss_pred             EeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence            999999999998765310    0000011  112345678999999999998887776443

>KOG0643|consensus

Probab=99.96  E-value=7.6e-28  Score=183.02  Aligned_cols=247  Identities=13%  Similarity=0.161  Sum_probs=176.2

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+.+|. ||.+++.|.++.||-..+              .+.+.++.||++.|.|++..-+.+ .++||+.|.++++|
T Consensus        16 iKyN~eGD-LlFscaKD~~~~vw~s~n--------------GerlGty~GHtGavW~~Did~~s~-~liTGSAD~t~kLW   79 (327)
T KOG0643|consen   16 IKYNREGD-LLFSCAKDSTPTVWYSLN--------------GERLGTYDGHTGAVWCCDIDWDSK-HLITGSADQTAKLW   79 (327)
T ss_pred             EEecCCCc-EEEEecCCCCceEEEecC--------------CceeeeecCCCceEEEEEecCCcc-eeeeccccceeEEE
Confidence            57899997 999999999999997654              378899999999999999998888 66799999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeecceeeeeccccccccceeecccc
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHAL  160 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~  160 (384)
                      |++++             ..+..|+.+              .+|..+.|+++|+.++-.+                .+..
T Consensus        80 Dv~tG-------------k~la~~k~~--------------~~Vk~~~F~~~gn~~l~~t----------------D~~m  116 (327)
T KOG0643|consen   80 DVETG-------------KQLATWKTN--------------SPVKRVDFSFGGNLILAST----------------DKQM  116 (327)
T ss_pred             EcCCC-------------cEEEEeecC--------------CeeEEEeeccCCcEEEEEe----------------hhhc
Confidence            99998             344555543              3477899999987755100                0000


Q ss_pred             cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEE
Q psy4577         161 EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK  240 (384)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  240 (384)
                      ..+|                                 .+.+..+.-.+.                    .....-+....
T Consensus       117 g~~~---------------------------------~v~~fdi~~~~~--------------------~~~s~ep~~kI  143 (327)
T KOG0643|consen  117 GYTC---------------------------------FVSVFDIRDDSS--------------------DIDSEEPYLKI  143 (327)
T ss_pred             Ccce---------------------------------EEEEEEccCChh--------------------hhcccCceEEe
Confidence            0000                                 011111110000                    00011223444


Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      ..+...++.+-|.|.++ ++++|..||.|.+||++        .+. +.+..-..|...|+.+.++||. .+++|+|.|.
T Consensus       144 ~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~--------~g~-~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dt  212 (327)
T KOG0643|consen  144 PTPDSKITSALWGPLGE-TIIAGHEDGSISIYDAR--------TGK-ELVDSDEEHSSKINDLQFSRDR-TYFITGSKDT  212 (327)
T ss_pred             cCCccceeeeeecccCC-EEEEecCCCcEEEEEcc--------cCc-eeeechhhhccccccccccCCc-ceEEecccCc
Confidence            45668899999999996 99999999999999997        332 2344567788899999999998 7999999999


Q ss_pred             cEEEEecCCCCC---------------------------------------CCc-------c--ccceeeeeccCCcEeE
Q psy4577         321 TICLWDINATPK---------------------------------------ENR-------V--IDAKTIFTGHTAVVEL  352 (384)
Q Consensus       321 ~i~iwd~~~~~~---------------------------------------~~~-------~--~~~~~~~~~h~~~v~~  352 (384)
                      +.++||.++...                                       .++       .  -..+..+++|-++|++
T Consensus       213 takl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINs  292 (327)
T KOG0643|consen  213 TAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINS  292 (327)
T ss_pred             cceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcce
Confidence            999999887520                                       000       0  0023345789999999


Q ss_pred             EEEecCCCcccccccccc
Q psy4577         353 ELIERLTKKADPVCTLEK  370 (384)
Q Consensus       353 ~~~sp~~~~~~~~c~~~~  370 (384)
                      |+|||+|+.-++......
T Consensus       293 vAfhPdGksYsSGGEDG~  310 (327)
T KOG0643|consen  293 VAFHPDGKSYSSGGEDGY  310 (327)
T ss_pred             eEECCCCcccccCCCCce
Confidence            999999998766554433

>KOG0276|consensus

Probab=99.96  E-value=1.8e-28  Score=207.06  Aligned_cols=210  Identities=17%  Similarity=0.250  Sum_probs=173.2

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCc
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPF   88 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~   88 (384)
                      +.+++|+.|.+|+||+..+              .+.+..+..|.+-|.|++.+|..+ +++|+|+|-+|++||.+..   
T Consensus        68 nWiv~GsDD~~IrVfnynt--------------~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~---  129 (794)
T KOG0276|consen   68 NWIVTGSDDMQIRVFNYNT--------------GEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENE---  129 (794)
T ss_pred             ceEEEecCCceEEEEeccc--------------ceeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCc---
Confidence            4799999999999999987              577889999999999999999999 6669999999999998764   


Q ss_pred             cchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCcee-ee----cceeeeeccccccccceeeccccccc
Q psy4577          89 DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR-VI----NEEYKIWKKNTPFLYDLVMTHALEWP  163 (384)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~----d~~v~~w~~~~~~~~~~~~~~~~~~~  163 (384)
                                     |.     +.+++.||  ...|++++|.|..+. ++    |++|++|.+..+..            
T Consensus       130 ---------------wa-----~~qtfeGH--~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~------------  175 (794)
T KOG0276|consen  130 ---------------WA-----CEQTFEGH--EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP------------  175 (794)
T ss_pred             ---------------ee-----eeeEEcCc--ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC------------
Confidence                           32     23466777  667999999998743 32    88888886633211            


Q ss_pred             ceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeec
Q psy4577         164 SLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINH  243 (384)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  243 (384)
                                                                                               ...+.+|
T Consensus       176 -------------------------------------------------------------------------nfTl~gH  182 (794)
T KOG0276|consen  176 -------------------------------------------------------------------------NFTLEGH  182 (794)
T ss_pred             -------------------------------------------------------------------------ceeeecc
Confidence                                                                                     3344589


Q ss_pred             CCceEEEEEcCCC-CcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         244 EGEVNRARYMPQN-PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       244 ~~~v~~v~~~p~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      ...|++|+|-+.| +-+|+||++|.+|+|||+.        +..  .+.++.||...|..+.|+|.-| +++|||+||++
T Consensus       183 ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ--------tk~--CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTv  251 (794)
T KOG0276|consen  183 EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ--------TKS--CVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTV  251 (794)
T ss_pred             ccCcceEEeccCCCcceEEecCCCceEEEeecc--------hHH--HHHHhhcccccceEEEecCCCc-EEEEecCCccE
Confidence            9999999998854 2389999999999999985        333  4668999999999999999985 99999999999


Q ss_pred             EEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577         323 CLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK  361 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  361 (384)
                      +||+-.+.+       ...++.--.++|+|++-.+.+..
T Consensus       252 riWhs~Ty~-------lE~tLn~gleRvW~I~~~k~~~~  283 (794)
T KOG0276|consen  252 RIWNSKTYK-------LEKTLNYGLERVWCIAAHKGDGK  283 (794)
T ss_pred             EEecCccee-------hhhhhhcCCceEEEEeecCCCCe
Confidence            999999987       66677666788999988776654

>KOG0318|consensus

Probab=99.96  E-value=1.7e-27  Score=197.29  Aligned_cols=314  Identities=14%  Similarity=0.147  Sum_probs=198.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccc------c-----------------------CCCCCCCCeeEEEeccc
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQS------T-----------------------EDAEDGPPELLFIHGGH   51 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~------~-----------------------~~~~~~~~~~~~~~~gh   51 (384)
                      |+|+||+. .|+|+|.|.+++|||+.+..-.+.      .                       .......+..+.++.||
T Consensus       241 lsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH  319 (603)
T KOG0318|consen  241 LSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH  319 (603)
T ss_pred             EEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc
Confidence            57999998 599999999999999987531100      0                       00122223356677899


Q ss_pred             ccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec
Q psy4577          52 TAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP  131 (384)
Q Consensus        52 ~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  131 (384)
                      ...|++|..+|+++ .|+||+.||.|.-|+...+...                         .+.+..+...|.+++-+.
T Consensus       320 nK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~-------------------------~~~g~~h~nqI~~~~~~~  373 (603)
T KOG0318|consen  320 NKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSD-------------------------RLAGKGHTNQIKGMAASE  373 (603)
T ss_pred             ccceeEEEEcCCCC-EEEeeccCceEEEEecCCcccc-------------------------ccccccccceEEEEeecC
Confidence            99999999999998 7789999999999999876211                         111111134455565555


Q ss_pred             Cceeee---cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeecc--CCCCeEEEEEeec
Q psy4577         132 DVTRVI---NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTS--DEQNHLLIASVQL  206 (384)
Q Consensus       132 ~~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~  206 (384)
                      .+..+.   |.++++-+........... .........+...++.....-. +.-...++..+..  ..+-......+++
T Consensus       374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~-~~lg~QP~~lav~~d~~~avv~-~~~~iv~l~~~~~~~~~~~~y~~s~vAv  451 (603)
T KOG0318|consen  374 SGELFTIGWDDTLRVISLKDNGYTKSEV-VKLGSQPKGLAVLSDGGTAVVA-CISDIVLLQDQTKVSSIPIGYESSAVAV  451 (603)
T ss_pred             CCcEEEEecCCeEEEEecccCcccccce-eecCCCceeEEEcCCCCEEEEE-ecCcEEEEecCCcceeeccccccceEEE
Confidence            444433   6777765543322211100 0000001122222221100000 0001111221111  1112223445667


Q ss_pred             CCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q psy4577         207 PNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGE  286 (384)
Q Consensus       207 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  286 (384)
                      ++++..+.+...|.....+...+..  .........|.++|++|+|||++. +||+|...+.+.+||...        ..
T Consensus       452 ~~~~~~vaVGG~Dgkvhvysl~g~~--l~ee~~~~~h~a~iT~vaySpd~~-yla~~Da~rkvv~yd~~s--------~~  520 (603)
T KOG0318|consen  452 SPDGSEVAVGGQDGKVHVYSLSGDE--LKEEAKLLEHRAAITDVAYSPDGA-YLAAGDASRKVVLYDVAS--------RE  520 (603)
T ss_pred             cCCCCEEEEecccceEEEEEecCCc--ccceeeeecccCCceEEEECCCCc-EEEEeccCCcEEEEEccc--------Cc
Confidence            7777777777777776555332221  123445678999999999999996 999999999999999862        22


Q ss_pred             ccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         287 CHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       287 ~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      . ....+..|.+.|.+++|+|+. .++||||.|-.|.||+++...+      .+....+|...|+.+.|-.+...+
T Consensus       521 ~-~~~~w~FHtakI~~~aWsP~n-~~vATGSlDt~Viiysv~kP~~------~i~iknAH~~gVn~v~wlde~tvv  588 (603)
T KOG0318|consen  521 V-KTNRWAFHTAKINCVAWSPNN-KLVATGSLDTNVIIYSVKKPAK------HIIIKNAHLGGVNSVAWLDESTVV  588 (603)
T ss_pred             e-ecceeeeeeeeEEEEEeCCCc-eEEEeccccceEEEEEccChhh------heEeccccccCceeEEEecCceEE
Confidence            2 344566799999999999997 7999999999999999987652      455556799999999997655543

>KOG0645|consensus

Probab=99.96  E-value=2.8e-27  Score=180.30  Aligned_cols=240  Identities=18%  Similarity=0.356  Sum_probs=175.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|.|+ +||+||.|.++.||.-..            ...+.+.++.||...|.|++|+++|. +||+|+.|+.|-||
T Consensus        67 vAwsp~g~-~La~aSFD~t~~Iw~k~~------------~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiW  132 (312)
T KOG0645|consen   67 VAWSPHGR-YLASASFDATVVIWKKED------------GEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIW  132 (312)
T ss_pred             eeecCCCc-EEEEeeccceEEEeecCC------------CceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEE
Confidence            68999998 899999999999997653            33688999999999999999999999 88999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      .+.....+             .        ....+..|  ...|..+.|+|....++    |.+|++|+.....      
T Consensus       133 e~deddEf-------------e--------c~aVL~~H--tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd------  183 (312)
T KOG0645|consen  133 EIDEDDEF-------------E--------CIAVLQEH--TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD------  183 (312)
T ss_pred             EecCCCcE-------------E--------EEeeeccc--cccccEEEEcCCcceeEEeccCCeEEEEeecCCC------
Confidence            99754211             0        22345556  34577899999887777    9999998664211      


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                          +|.|..                    .+.      .....++++.|.+.+.++.....|...+.|..+.       
T Consensus       184 ----dW~c~~--------------------tl~------g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-------  226 (312)
T KOG0645|consen  184 ----DWECVQ--------------------TLD------GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-------  226 (312)
T ss_pred             ----CeeEEE--------------------Eec------CccceEEEEEecCCCceEEEecCCcceEeeeecc-------
Confidence                111110                    000      1112677888888777777777787777663321       


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcccee-eecCCCCceEEEEeCCCCCCeEEE
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDL-RLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                       .....|+..+..+.|. ++  .+|+++.|+.|++|.....+..    .....+. .-..|...|++++|+|..+++|++
T Consensus       227 -~~~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~----p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s  298 (312)
T KOG0645|consen  227 -DLSGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDE----PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLAS  298 (312)
T ss_pred             -CcchhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCC----chHHHHHhhhcccccccceEEEcCCCCCceee
Confidence             1122478899999999 44  8999999999999987632211    1111221 334688899999999965589999


Q ss_pred             eeCCCcEEEEecC
Q psy4577         316 ASDDHTICLWDIN  328 (384)
Q Consensus       316 ~s~Dg~i~iwd~~  328 (384)
                      |+.||.|++|.+.
T Consensus       299 ~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  299 GGDDGIVNFWELE  311 (312)
T ss_pred             cCCCceEEEEEec
Confidence            9999999999874

>KOG0276|consensus

Probab=99.96  E-value=5.4e-28  Score=204.20  Aligned_cols=222  Identities=18%  Similarity=0.277  Sum_probs=182.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|||..+ .+.++-.+|.|.|||.++              ...+..+.-..-+|.+..|-+-.+ -+++||+|..|||+
T Consensus        19 Vd~HPteP-w~la~LynG~V~IWnyet--------------qtmVksfeV~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVf   82 (794)
T KOG0276|consen   19 VDFHPTEP-WILAALYNGDVQIWNYET--------------QTMVKSFEVSEVPVRAAKFIARKN-WIVTGSDDMQIRVF   82 (794)
T ss_pred             eecCCCCc-eEEEeeecCeeEEEeccc--------------ceeeeeeeecccchhhheeeeccc-eEEEecCCceEEEE
Confidence            57999998 688888999999999987              466666666677999999998888 56799999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      +..++             +.++.++.           |  .+.+.+++-+|....++    |-++++|+-...       
T Consensus        83 nynt~-------------ekV~~FeA-----------H--~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-------  129 (794)
T KOG0276|consen   83 NYNTG-------------EKVKTFEA-----------H--SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-------  129 (794)
T ss_pred             ecccc-------------eeeEEeec-----------c--ccceeeeeecCCCCeEEecCCccEEEEeeccCc-------
Confidence            99886             33333332           2  56677888889887776    667777754221       


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                                                                                   ...
T Consensus       130 -----------------------------------------------------------------------------wa~  132 (794)
T KOG0276|consen  130 -----------------------------------------------------------------------------WAC  132 (794)
T ss_pred             -----------------------------------------------------------------------------eee
Confidence                                                                                         112


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCC--CCCeEE
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPS--LNGYLL  314 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--~~~~l~  314 (384)
                      ...+.+|+.-|++|+|+|...+.||++|-|++|+||.+.          +..|..++.||...|+|+.|-+-  .| +|+
T Consensus       133 ~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg----------s~~~nfTl~gHekGVN~Vdyy~~gdkp-ylI  201 (794)
T KOG0276|consen  133 EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG----------SPHPNFTLEGHEKGVNCVDYYTGGDKP-YLI  201 (794)
T ss_pred             eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcC----------CCCCceeeeccccCcceEEeccCCCcc-eEE
Confidence            445568999999999999888999999999999999984          45577899999999999999874  34 999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      ||+.|.+|+|||..+.+       |+++|.||...|+.+.|||.-+.+++..
T Consensus       202 sgaDD~tiKvWDyQtk~-------CV~TLeGHt~Nvs~v~fhp~lpiiisgs  246 (794)
T KOG0276|consen  202 SGADDLTIKVWDYQTKS-------CVQTLEGHTNNVSFVFFHPELPIIISGS  246 (794)
T ss_pred             ecCCCceEEEeecchHH-------HHHHhhcccccceEEEecCCCcEEEEec
Confidence            99999999999999998       9999999999999999999888766553

>KOG0281|consensus

Probab=99.96  E-value=2.2e-29  Score=198.40  Aligned_cols=243  Identities=19%  Similarity=0.295  Sum_probs=160.2

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCcc
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFD   89 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~   89 (384)
                      .+++|..|++|+|||...              ..+++.+.||++.|.|+.|..  + +|+|||.|.+|++||+++++.+.
T Consensus       209 kiVSGlrDnTikiWD~n~--------------~~c~~~L~GHtGSVLCLqyd~--r-viisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  209 KIVSGLRDNTIKIWDKNS--------------LECLKILTGHTGSVLCLQYDE--R-VIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             hhhcccccCceEEecccc--------------HHHHHhhhcCCCcEEeeeccc--e-EEEecCCCceEEEEeccCCchhh
Confidence            689999999999999986              578889999999999999964  3 88999999999999999975432


Q ss_pred             chhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCc--eeeecceeeeeccccc---cccceeecccccccc
Q psy4577          90 DAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV--TRVINEEYKIWKKNTP---FLYDLVMTHALEWPS  164 (384)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~d~~v~~w~~~~~---~~~~~~~~~~~~~~~  164 (384)
                                              ++.+|  .+.|..+.|+..-  +..-|.++.+||+..+   .+...+.+|....  
T Consensus       272 ------------------------tlihH--ceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV--  323 (499)
T KOG0281|consen  272 ------------------------TLIHH--CEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV--  323 (499)
T ss_pred             ------------------------HHhhh--cceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe--
Confidence                                    22223  3344455554432  2233566666666433   3444444432211  


Q ss_pred             eeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecC
Q psy4577         165 LTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHE  244 (384)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  244 (384)
                      ..+++...                           +|.+.+     +.-.+..|+.....+           +..+.+|.
T Consensus       324 NvVdfd~k---------------------------yIVsAS-----gDRTikvW~~st~ef-----------vRtl~gHk  360 (499)
T KOG0281|consen  324 NVVDFDDK---------------------------YIVSAS-----GDRTIKVWSTSTCEF-----------VRTLNGHK  360 (499)
T ss_pred             eeeccccc---------------------------eEEEec-----CCceEEEEeccceee-----------ehhhhccc
Confidence            00111000                           000000     000011111111111           44556788


Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      ..|-|+.+.  + .++++||.|.+||+||+.        .|.+  +..+.||..-|.++.|..   ..++||+.||+|++
T Consensus       361 RGIAClQYr--~-rlvVSGSSDntIRlwdi~--------~G~c--LRvLeGHEeLvRciRFd~---krIVSGaYDGkikv  424 (499)
T KOG0281|consen  361 RGIACLQYR--D-RLVVSGSSDNTIRLWDIE--------CGAC--LRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKV  424 (499)
T ss_pred             ccceehhcc--C-eEEEecCCCceEEEEecc--------ccHH--HHHHhchHHhhhheeecC---ceeeeccccceEEE
Confidence            888888763  4 599999999999999997        5654  457999999999999963   57999999999999


Q ss_pred             EecCCCCCCC--ccccceeeeeccCCcEeEEEEe
Q psy4577         325 WDINATPKEN--RVIDAKTIFTGHTAVVELELIE  356 (384)
Q Consensus       325 wd~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~s  356 (384)
                      ||+..+....  ...-++.++..|++.|..+.|-
T Consensus       425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD  458 (499)
T KOG0281|consen  425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD  458 (499)
T ss_pred             EecccccCCcccccchHHHhhhhccceeEEEeec
Confidence            9998764221  1112566677899999998883

>KOG0285|consensus

Probab=99.96  E-value=2.5e-28  Score=193.00  Aligned_cols=198  Identities=18%  Similarity=0.182  Sum_probs=165.3

Q ss_pred             CCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeee
Q psy4577          41 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHAL  120 (384)
Q Consensus        41 ~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (384)
                      +.++..++.||.+.|.|+++.|-.. .++||+.|++|+|||+.+++                        |..++.||  
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~------------------------LkltltGh--  192 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQ------------------------LKLTLTGH--  192 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCe------------------------EEEeecch--
Confidence            4567778899999999999999988 78899999999999998851                        11255566  


Q ss_pred             ccCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCC
Q psy4577         121 EWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQ  196 (384)
Q Consensus       121 ~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (384)
                      -..|..+++++-..+++    |++|+-||+....+                                             
T Consensus       193 i~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv---------------------------------------------  227 (460)
T KOG0285|consen  193 IETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV---------------------------------------------  227 (460)
T ss_pred             hheeeeeeecccCceEEEecCCCeeEEEechhhhh---------------------------------------------
Confidence            45677899998888877    78888887744322                                             


Q ss_pred             CeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q psy4577         197 NHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK  276 (384)
Q Consensus       197 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~  276 (384)
                                                              +....+|-..|.+++.+|.-. .|++|+.|.++||||++.
T Consensus       228 ----------------------------------------IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRt  266 (460)
T KOG0285|consen  228 ----------------------------------------IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRT  266 (460)
T ss_pred             ----------------------------------------HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecc
Confidence                                                    222237888899999999884 999999999999999973


Q ss_pred             CCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577         277 HPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIE  356 (384)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  356 (384)
                                ...+..+.||..+|.++.+.|..+ .++|||.|++|++||++.++       ...++..|+..|.+++.|
T Consensus       267 ----------r~~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agk-------t~~tlt~hkksvral~lh  328 (460)
T KOG0285|consen  267 ----------RASVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGK-------TMITLTHHKKSVRALCLH  328 (460)
T ss_pred             ----------cceEEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCc-------eeEeeecccceeeEEecC
Confidence                      235779999999999999999875 89999999999999999998       889999999999999999


Q ss_pred             cCCCccccccccc
Q psy4577         357 RLTKKADPVCTLE  369 (384)
Q Consensus       357 p~~~~~~~~c~~~  369 (384)
                      |.....++.|..+
T Consensus       329 P~e~~fASas~dn  341 (460)
T KOG0285|consen  329 PKENLFASASPDN  341 (460)
T ss_pred             CchhhhhccCCcc
Confidence            9998877776544

>KOG1332|consensus

Probab=99.96  E-value=7.8e-28  Score=180.67  Aligned_cols=239  Identities=18%  Similarity=0.255  Sum_probs=171.4

Q ss_pred             CCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEE-cc-CCCcEEEEEecCCeEEEEEccc
Q psy4577           7 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW-NP-NEPWVICSVSEDNIMQILSVVC   84 (384)
Q Consensus         7 ~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~-~~-~~~~~l~s~s~D~~i~vwd~~~   84 (384)
                      |. .|||++.|++|+|+.++.++           ...++.+|.||.++|..++| +| .|. +|||++.||.|.||.-++
T Consensus        23 gk-rlATcsSD~tVkIf~v~~n~-----------~s~ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~   89 (299)
T KOG1332|consen   23 GK-RLATCSSDGTVKIFEVRNNG-----------QSKLLAELTGHSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEEN   89 (299)
T ss_pred             cc-eeeeecCCccEEEEEEcCCC-----------CceeeeEecCCCCCeeEEeecccccCc-EeeEeecCceEEEEecCC
Confidence            44 69999999999999998744           23788999999999999999 45 455 999999999999998776


Q ss_pred             CCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee------cceeeeeccccccccceeecc
Q psy4577          85 VEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI------NEEYKIWKKNTPFLYDLVMTH  158 (384)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------d~~v~~w~~~~~~~~~~~~~~  158 (384)
                      +                 .|.....     ...|  ..+|++++|.|.+-.+.      ||.|.+.+.+..         
T Consensus        90 g-----------------~w~k~~e-----~~~h--~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~---------  136 (299)
T KOG1332|consen   90 G-----------------RWTKAYE-----HAAH--SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS---------  136 (299)
T ss_pred             C-----------------chhhhhh-----hhhh--cccceeecccccccceEEEEeeCCCcEEEEEEcCC---------
Confidence            4                 1222211     1123  67899999999874332      555554322111         


Q ss_pred             cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEE
Q psy4577         159 ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE  238 (384)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  238 (384)
                                                                                      +.         .....
T Consensus       137 ----------------------------------------------------------------g~---------w~t~k  143 (299)
T KOG1332|consen  137 ----------------------------------------------------------------GG---------WTTSK  143 (299)
T ss_pred             ----------------------------------------------------------------CC---------ccchh
Confidence                                                                            00         00012


Q ss_pred             EEeecCCceEEEEEcCC---C----------CcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEe
Q psy4577         239 IKINHEGEVNRARYMPQ---N----------PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSW  305 (384)
Q Consensus       239 ~~~~~~~~v~~v~~~p~---~----------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  305 (384)
                      ...+|.-.|++++|.|.   |          ...|++|+.|..|+||+..        .+..+....|.+|.+.|+.++|
T Consensus       144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~--------~~~w~~e~~l~~H~dwVRDVAw  215 (299)
T KOG1332|consen  144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD--------SDSWKLERTLEGHKDWVRDVAW  215 (299)
T ss_pred             hhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC--------Ccchhhhhhhhhcchhhhhhhh
Confidence            23367777888888875   2          1369999999999999986        4455555579999999999999


Q ss_pred             CCCC---CCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccceeeE
Q psy4577         306 NPSL---NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKKKE  376 (384)
Q Consensus       306 s~~~---~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~~~  376 (384)
                      .|.-   ..+|||||.||+|.||-.+.. .+.....++.   ....+++.+.||+.|+.++..+-.++..-.||
T Consensus       216 aP~~gl~~s~iAS~SqDg~viIwt~~~e-~e~wk~tll~---~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  216 APSVGLPKSTIASCSQDGTVIIWTKDEE-YEPWKKTLLE---EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             ccccCCCceeeEEecCCCcEEEEEecCc-cCcccccccc---cCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            9963   148999999999999988732 2222222333   35688999999999999988877666554443

>KOG0284|consensus

Probab=99.96  E-value=5e-29  Score=200.03  Aligned_cols=232  Identities=18%  Similarity=0.295  Sum_probs=172.2

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccc-cceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      +.|++++. .+++|..+|.|++|+..-               ..+...++|. ..|.+++|+|++. .++|||.||+|+|
T Consensus       144 m~ws~~g~-wmiSgD~gG~iKyWqpnm---------------nnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~iki  206 (464)
T KOG0284|consen  144 MKWSHNGT-WMISGDKGGMIKYWQPNM---------------NNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKI  206 (464)
T ss_pred             EEEccCCC-EEEEcCCCceEEecccch---------------hhhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEE
Confidence            46899997 799999999999999874               3344445554 8999999999888 6789999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      ||.....                   .     ...+.||  ...|.++.|+|....++    |..|++||.++..+...+
T Consensus       207 Wdf~~~k-------------------e-----e~vL~GH--gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl  260 (464)
T KOG0284|consen  207 WDFRMPK-------------------E-----ERVLRGH--GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL  260 (464)
T ss_pred             EeccCCc-------------------h-----hheeccC--CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh
Confidence            9986631                   0     1244677  67799999999988888    789999999988876665


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      ..|...  ++.+.|.+                                     ++..++...-|..++.++..    ...
T Consensus       261 h~HKnt--Vl~~~f~~-------------------------------------n~N~Llt~skD~~~kv~DiR----~mk  297 (464)
T KOG0284|consen  261 HGHKNT--VLAVKFNP-------------------------------------NGNWLLTGSKDQSCKVFDIR----TMK  297 (464)
T ss_pred             hhccce--EEEEEEcC-------------------------------------CCCeeEEccCCceEEEEehh----HhH
Confidence            555432  33344433                                     33333333333333333220    011


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcccee-eecCCCCceEEEEeCCCCCCeEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDL-RLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                      .+....+|+..|+++.|+|-.+.+|++|+.||.|..|.+..          .+|+. .-.+|...|++++|+|-| .+|+
T Consensus       298 El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~----------~~p~~~i~~AHd~~iwsl~~hPlG-hil~  366 (464)
T KOG0284|consen  298 ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL----------EEPLGEIPPAHDGEIWSLAYHPLG-HILA  366 (464)
T ss_pred             HHHHhhcchhhheeeccccccccceeeccCCCceEEEeccc----------cccccCCCcccccceeeeeccccc-eeEe
Confidence            13345689999999999999888999999999999999841          12222 335799999999999999 8999


Q ss_pred             EeeCCCcEEEEecCC
Q psy4577         315 SASDDHTICLWDINA  329 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~  329 (384)
                      ||+.|.++++|.-..
T Consensus       367 tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  367 TGSNDRTVRFWTRNR  381 (464)
T ss_pred             ecCCCcceeeeccCC
Confidence            999999999997654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=2e-26  Score=194.32  Aligned_cols=263  Identities=22%  Similarity=0.302  Sum_probs=186.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+++ +|++++.||.|++|++..              .+....+.+|...+.++.|+|++. .+++++.|+.|++|
T Consensus        15 ~~~~~~~~-~l~~~~~~g~i~i~~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~   78 (289)
T cd00200          15 VAFSPDGK-LLATGSGDGTIKVWDLET--------------GELLRTLKGHTGPVRDVAASADGT-YLASGSSDKTIRLW   78 (289)
T ss_pred             EEEcCCCC-EEEEeecCcEEEEEEeeC--------------CCcEEEEecCCcceeEEEECCCCC-EEEEEcCCCeEEEE
Confidence            46899986 799999999999999975              235566678999999999999997 77899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      ++..++.             ..           .+..|  ...+.++.|+|++..++    ++.+.+|+.........+.
T Consensus        79 ~~~~~~~-------------~~-----------~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  132 (289)
T cd00200          79 DLETGEC-------------VR-----------TLTGH--TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR  132 (289)
T ss_pred             EcCcccc-------------eE-----------EEecc--CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec
Confidence            9976411             11           11122  44688999999977666    7899999987543332222


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+.  .+...+.+.++.                                     ..+.....|.....|..    .....
T Consensus       133 ~~~--~~i~~~~~~~~~-------------------------------------~~l~~~~~~~~i~i~d~----~~~~~  169 (289)
T cd00200         133 GHT--DWVNSVAFSPDG-------------------------------------TFVASSSQDGTIKLWDL----RTGKC  169 (289)
T ss_pred             cCC--CcEEEEEEcCcC-------------------------------------CEEEEEcCCCcEEEEEc----ccccc
Confidence            221  112333333321                                     11111111111111111    01111


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ......|...+.+++|+|++. .+++++.|+.|++||++        .+  .++..+..|...+.+++|+|++ .+++++
T Consensus       170 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~--------~~--~~~~~~~~~~~~i~~~~~~~~~-~~~~~~  237 (289)
T cd00200         170 VATLTGHTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLS--------TG--KCLGTLRGHENGVNSVAFSPDG-YLLASG  237 (289)
T ss_pred             ceeEecCccccceEEECCCcC-EEEEecCCCcEEEEECC--------CC--ceecchhhcCCceEEEEEcCCC-cEEEEE
Confidence            333447788999999999995 77888889999999986        22  2344666888899999999997 799998


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      +.||.|++||+.+++       +...+.+|...|.+++|+|+++.+.+.+.
T Consensus       238 ~~~~~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  281 (289)
T cd00200         238 SEDGTIRVWDLRTGE-------CVQTLSGHTNSVTSLAWSPDGKRLASGSA  281 (289)
T ss_pred             cCCCcEEEEEcCCce-------eEEEccccCCcEEEEEECCCCCEEEEecC
Confidence            889999999999877       88888899999999999999887666543

>KOG0640|consensus

Probab=99.96  E-value=3.9e-28  Score=188.52  Aligned_cols=217  Identities=17%  Similarity=0.351  Sum_probs=159.4

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccC----CCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE----DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM   77 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i   77 (384)
                      +|||||. ++|||+.|-.|+|.|++..-......    ........++.++..|.+.|+++.|+|... +|+|++.|++|
T Consensus       119 afs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~-ILiS~srD~tv  196 (430)
T KOG0640|consen  119 AFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET-ILISGSRDNTV  196 (430)
T ss_pred             eeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-eEEeccCCCeE
Confidence            6999997 99999999999999997321111110    111112357889999999999999999999 89999999999


Q ss_pred             EEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeec----ceeeeeccccccccc
Q psy4577          78 QILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVIN----EEYKIWKKNTPFLYD  153 (384)
Q Consensus        78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d----~~v~~w~~~~~~~~~  153 (384)
                      +++|+.....          .+.++++              ....+|.++.|+|.|.+++-    -++++||+++-.++-
T Consensus       197 KlFDfsK~sa----------KrA~K~~--------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv  252 (430)
T KOG0640|consen  197 KLFDFSKTSA----------KRAFKVF--------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV  252 (430)
T ss_pred             EEEecccHHH----------HHHHHHh--------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEee
Confidence            9999865310          0111111              11346889999999999883    345666554422210


Q ss_pred             eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCC
Q psy4577         154 LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG  233 (384)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  233 (384)
                      .                                                                               
T Consensus       253 s-------------------------------------------------------------------------------  253 (430)
T KOG0640|consen  253 S-------------------------------------------------------------------------------  253 (430)
T ss_pred             e-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee-cCCCC-ceEEEEeCCCCCC
Q psy4577         234 KIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL-RGHQK-EGYGLSWNPSLNG  311 (384)
Q Consensus       234 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~h~~-~i~~~~~s~~~~~  311 (384)
                         .....+|.+.|++|.+++.+. +.++||.||.|++||--        ++.+..  ++ ..|.+ .|.++.|..++ +
T Consensus       254 ---anPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGV--------S~rCv~--t~~~AH~gsevcSa~Ftkn~-k  318 (430)
T KOG0640|consen  254 ---ANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGV--------SNRCVR--TIGNAHGGSEVCSAVFTKNG-K  318 (430)
T ss_pred             ---cCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccc--------cHHHHH--HHHhhcCCceeeeEEEccCC-e
Confidence               000126899999999999995 99999999999999964        444433  33 34654 89999999998 8


Q ss_pred             eEEEeeCCCcEEEEecCCCCCCCccccceeeeec
Q psy4577         312 YLLSASDDHTICLWDINATPKENRVIDAKTIFTG  345 (384)
Q Consensus       312 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  345 (384)
                      |++|.+.|..+++|++.+++       ++..+.|
T Consensus       319 yiLsSG~DS~vkLWEi~t~R-------~l~~YtG  345 (430)
T KOG0640|consen  319 YILSSGKDSTVKLWEISTGR-------MLKEYTG  345 (430)
T ss_pred             EEeecCCcceeeeeeecCCc-------eEEEEec
Confidence            99999999999999999998       8887764

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=2.4e-26  Score=202.61  Aligned_cols=233  Identities=13%  Similarity=0.175  Sum_probs=163.4

Q ss_pred             CCCCC-CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp-~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      |+|+| ++. +||+|+.|++|+|||+...+..       ......+..+.+|...|.+++|+|++..+|++++.|++|+|
T Consensus        81 v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~-------~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI  152 (493)
T PTZ00421         81 VAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLT-------QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV  152 (493)
T ss_pred             EEEcCCCCC-EEEEEeCCCEEEEEecCCCccc-------cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence            57999 554 8999999999999999753210       01123466788999999999999997658999999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      ||+.+++.             +           ..+.+|  ...|.+++|+|++..++    |+++++||.++....   
T Consensus       153 WDl~tg~~-------------~-----------~~l~~h--~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v---  203 (493)
T PTZ00421        153 WDVERGKA-------------V-----------EVIKCH--SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV---  203 (493)
T ss_pred             EECCCCeE-------------E-----------EEEcCC--CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE---
Confidence            99977411             1           122334  56789999999998887    899999998653221   


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                      
T Consensus       204 --------------------------------------------------------------------------------  203 (493)
T PTZ00421        204 --------------------------------------------------------------------------------  203 (493)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEeecCCc-eEEEEEcCCCCcEEEEE---eCCCcEEEEecCCCCCCCCCCCCccceeeecCC-CCceEEEEeCCCCC
Q psy4577         236 EIEIKINHEGE-VNRARYMPQNPCVIATK---TPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH-QKEGYGLSWNPSLN  310 (384)
Q Consensus       236 ~~~~~~~~~~~-v~~v~~~p~~~~~l~s~---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~s~~~~  310 (384)
                        ....+|.+. +..+.|.+++..++++|   +.|+.|++||++.        . ..++.....+ ...+....|++++ 
T Consensus       204 --~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~--------~-~~p~~~~~~d~~~~~~~~~~d~d~-  271 (493)
T PTZ00421        204 --SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK--------M-ASPYSTVDLDQSSALFIPFFDEDT-  271 (493)
T ss_pred             --EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC--------C-CCceeEeccCCCCceEEEEEcCCC-
Confidence              111133322 34567788775344443   3589999999963        1 1233333333 3456667899998 


Q ss_pred             CeEEEee-CCCcEEEEecCCCCCCCccccceeeeec-cCCcEeEEEEecCCCccccccccc
Q psy4577         311 GYLLSAS-DDHTICLWDINATPKENRVIDAKTIFTG-HTAVVELELIERLTKKADPVCTLE  369 (384)
Q Consensus       311 ~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~c~~~  369 (384)
                      .+|++|+ .|+.|++||+.+++       ++..+.. +..++..++|.|.-......|...
T Consensus       272 ~~L~lggkgDg~Iriwdl~~~~-------~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~  325 (493)
T PTZ00421        272 NLLYIGSKGEGNIRCFELMNER-------LTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIA  325 (493)
T ss_pred             CEEEEEEeCCCeEEEEEeeCCc-------eEEEeeccCCCCCcceEecccccccccceeee
Confidence            6888877 59999999999886       6555543 556789999999776655566554

>KOG0316|consensus

Probab=99.96  E-value=4e-27  Score=175.94  Aligned_cols=254  Identities=14%  Similarity=0.194  Sum_probs=179.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+-+|. +.+|++.|++|++|+...              ..++++..||...|.+++.+.|.. .+++|+.|+.+.+|
T Consensus        23 vryN~dGn-Y~ltcGsdrtvrLWNp~r--------------g~liktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~vw   86 (307)
T KOG0316|consen   23 VRYNVDGN-YCLTCGSDRTVRLWNPLR--------------GALIKTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQVW   86 (307)
T ss_pred             EEEccCCC-EEEEcCCCceEEeecccc--------------cceeeeecCCCceeeecccccccc-ccccCCCCceEEEE
Confidence            46888996 899999999999999876              589999999999999999999888 68999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccc--e
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYD--L  154 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~--~  154 (384)
                      |+.+++.             .+.           +.+|  ...|..++|+.+...++    |.++++||-+....--  .
T Consensus        87 DV~TGkv-------------~Rr-----------~rgH--~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi  140 (307)
T KOG0316|consen   87 DVNTGKV-------------DRR-----------FRGH--LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI  140 (307)
T ss_pred             EcccCee-------------eee-----------cccc--cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch
Confidence            9999732             233           3345  56789999999998887    8899999986543211  1


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      +......  +.++..            .-+.++                           +..-|.+.+.+..   ..+.
T Consensus       141 ldea~D~--V~Si~v------------~~heIv---------------------------aGS~DGtvRtydi---R~G~  176 (307)
T KOG0316|consen  141 LDEAKDG--VSSIDV------------AEHEIV---------------------------AGSVDGTVRTYDI---RKGT  176 (307)
T ss_pred             hhhhcCc--eeEEEe------------cccEEE---------------------------eeccCCcEEEEEe---ecce
Confidence            0000000  011100            001111                           1122222211100   0011


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceE--EEEeCCCCCCe
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGY--GLSWNPSLNGY  312 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~--~~~~s~~~~~~  312 (384)
                         ........+|++++|++++. ..+.++.|+++|+.|-.        ++  +.+....||...=.  ..+++... ..
T Consensus       177 ---l~sDy~g~pit~vs~s~d~n-c~La~~l~stlrLlDk~--------tG--klL~sYkGhkn~eykldc~l~qsd-th  241 (307)
T KOG0316|consen  177 ---LSSDYFGHPITSVSFSKDGN-CSLASSLDSTLRLLDKE--------TG--KLLKSYKGHKNMEYKLDCCLNQSD-TH  241 (307)
T ss_pred             ---eehhhcCCcceeEEecCCCC-EEEEeeccceeeecccc--------hh--HHHHHhcccccceeeeeeeecccc-ee
Confidence               11112356899999999995 67777999999999964        34  45668899987443  44556554 69


Q ss_pred             EEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCc-EeEEEEecCCCcc
Q psy4577         313 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAV-VELELIERLTKKA  362 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~~~~~  362 (384)
                      +++||+||.|++||+....       .+..+..|..+ |.++.++|.-...
T Consensus       242 V~sgSEDG~Vy~wdLvd~~-------~~sk~~~~~~v~v~dl~~hp~~~~f  285 (307)
T KOG0316|consen  242 VFSGSEDGKVYFWDLVDET-------QISKLSVVSTVIVTDLSCHPTMDDF  285 (307)
T ss_pred             EEeccCCceEEEEEeccce-------eeeeeccCCceeEEeeecccCccce
Confidence            9999999999999999988       88889888888 8999999977643

>KOG0269|consensus

Probab=99.96  E-value=5.1e-28  Score=208.99  Aligned_cols=220  Identities=19%  Similarity=0.287  Sum_probs=173.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+.-.+++|||++..|.|.+||+....           ...++..+..|+..|++++|++..+++|+|||.||+|++|
T Consensus        93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~-----------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~  161 (839)
T KOG0269|consen   93 VKWGQLYSNLIATCSTNGVISVWDLNKSI-----------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCW  161 (839)
T ss_pred             cccccchhhhheeecCCCcEEEEecCccc-----------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEE
Confidence            46776666899999999999999998632           2356677889999999999999999999999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~  155 (384)
                      |++.....             .           +..+  ..++|..+.|+|.-...+     .|.+++||++.+..+   
T Consensus       162 DlR~~~S~-------------~-----------t~~~--nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~---  212 (839)
T KOG0269|consen  162 DLRSKKSK-------------S-----------TFRS--NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC---  212 (839)
T ss_pred             eeeccccc-------------c-----------cccc--cchhhhceeeccCCCceEEEecCCceEEEeeccCchhH---
Confidence            99774211             0           1111  145677899998754332     788888888665442   


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                      
T Consensus       213 --------------------------------------------------------------------------------  212 (839)
T KOG0269|consen  213 --------------------------------------------------------------------------------  212 (839)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                       ..++.+|.++|.++.|+|+. .+||||+.|+.|+|||..        .....++.++. -..+|.+++|-|..+..|||
T Consensus       213 -~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t--------~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAt  281 (839)
T KOG0269|consen  213 -EKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMT--------DSRAKPKHTIN-TIAPVGRVKWRPARSYHLAT  281 (839)
T ss_pred             -HHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEecc--------CCCccceeEEe-ecceeeeeeeccCccchhhh
Confidence             22334899999999999977 599999999999999996        34444544443 34689999999998889999


Q ss_pred             eeC--CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEec
Q psy4577         316 ASD--DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIER  357 (384)
Q Consensus       316 ~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp  357 (384)
                      ++.  |-.|+|||++..--      |..++..|...++.++|-.
T Consensus       282 csmv~dtsV~VWDvrRPYI------P~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  282 CSMVVDTSVHVWDVRRPYI------PYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             hhccccceEEEEeeccccc------cceeeeccCccccceeccC
Confidence            985  88999999997642      7888999999999999976

>KOG0293|consensus

Probab=99.95  E-value=4.2e-28  Score=195.12  Aligned_cols=234  Identities=20%  Similarity=0.281  Sum_probs=164.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEe-cccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      |.||||++ +|++|+.|..+.+||+.+.              .+...+ .+|...+.+++|.|||. -+++|+.|++|..
T Consensus       275 i~wSPDdr-yLlaCg~~e~~~lwDv~tg--------------d~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~  338 (519)
T KOG0293|consen  275 IMWSPDDR-YLLACGFDEVLSLWDVDTG--------------DLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIM  338 (519)
T ss_pred             EEECCCCC-eEEecCchHheeeccCCcc--------------hhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEE
Confidence            47999997 7888888999999999872              222211 23557899999999999 5679999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      ||++..              ....|+....            -.|.+++..+||+.++    |..+++++.........+
T Consensus       339 wdlDgn--------------~~~~W~gvr~------------~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li  392 (519)
T KOG0293|consen  339 WDLDGN--------------ILGNWEGVRD------------PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI  392 (519)
T ss_pred             ecCCcc--------------hhhccccccc------------ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc
Confidence            999873              2344543221            2377899999998876    777777665433222111


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      ..                                        ...|.++.++.++..+++...+.+...|+.    ....
T Consensus       393 se----------------------------------------~~~its~~iS~d~k~~LvnL~~qei~LWDl----~e~~  428 (519)
T KOG0293|consen  393 SE----------------------------------------EQPITSFSISKDGKLALVNLQDQEIHLWDL----EENK  428 (519)
T ss_pred             cc----------------------------------------cCceeEEEEcCCCcEEEEEcccCeeEEeec----chhh
Confidence            11                                        113455555555555555555555554422    2222


Q ss_pred             eEEEEeecCC--ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577         236 EIEIKINHEG--EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       236 ~~~~~~~~~~--~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l  313 (384)
                      .+.+..+|+.  -+..-||--.+..++|+||+|+.|+||+..        ++  +++..+.||...|++++|+|..+.++
T Consensus       429 lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~--------sg--kll~~LsGHs~~vNcVswNP~~p~m~  498 (519)
T KOG0293|consen  429 LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI--------SG--KLLAVLSGHSKTVNCVSWNPADPEMF  498 (519)
T ss_pred             HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc--------CC--ceeEeecCCcceeeEEecCCCCHHHh
Confidence            2344445543  345556666555699999999999999975        33  46789999999999999999888999


Q ss_pred             EEeeCCCcEEEEecCCC
Q psy4577         314 LSASDDHTICLWDINAT  330 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~~~  330 (384)
                      ||||.||+|+||-....
T Consensus       499 ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  499 ASASDDGTIRIWGPSDN  515 (519)
T ss_pred             hccCCCCeEEEecCCcc
Confidence            99999999999987643

>KOG0282|consensus

Probab=99.95  E-value=2.1e-27  Score=194.71  Aligned_cols=233  Identities=15%  Similarity=0.239  Sum_probs=161.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+++|. -+.++|.|+.|++||+++              .+++..+.. ...++|+.|+|++++++++|+.|+.|+.|
T Consensus       264 ~~~s~~g~-~fLS~sfD~~lKlwDtET--------------G~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~w  327 (503)
T KOG0282|consen  264 ASFNNCGT-SFLSASFDRFLKLWDTET--------------GQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQW  327 (503)
T ss_pred             hhccccCC-eeeeeecceeeeeecccc--------------ceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEE
Confidence            57999998 599999999999999998              345444432 34689999999997799999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+++++.+.                        .+..|  -..|..+.|.++|++++    |+++++|+.+.+.....+.
T Consensus       328 DiRs~kvvq------------------------eYd~h--Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~  381 (503)
T KOG0282|consen  328 DIRSGKVVQ------------------------EYDRH--LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIA  381 (503)
T ss_pred             eccchHHHH------------------------HHHhh--hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhc
Confidence            998863321                        11112  35688999999999888    8999999987665433322


Q ss_pred             ccc-ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         157 THA-LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       157 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      ... ..-|+  +...|....           .. .+  ...|++.+.++..                       ..... 
T Consensus       382 ~~~~hsmP~--~~~~P~~~~-----------~~-aQ--s~dN~i~ifs~~~-----------------------~~r~n-  421 (503)
T KOG0282|consen  382 DPEMHTMPC--LTLHPNGKW-----------FA-AQ--SMDNYIAIFSTVP-----------------------PFRLN-  421 (503)
T ss_pred             chhhccCcc--eecCCCCCe-----------eh-hh--ccCceEEEEeccc-----------------------ccccC-
Confidence            111 11111  111111110           00 00  1234444444321                       00000 


Q ss_pred             eEEEEeecC--CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577         236 EIEIKINHE--GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       236 ~~~~~~~~~--~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l  313 (384)
                      ....+.+|.  +.-..+.|||+|. +|++|+.||.+.+||.+          ..+.+..+.+|.+++..+.|+|.-+..+
T Consensus       422 kkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwk----------t~kl~~~lkah~~~ci~v~wHP~e~Skv  490 (503)
T KOG0282|consen  422 KKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWK----------TTKLVSKLKAHDQPCIGVDWHPVEPSKV  490 (503)
T ss_pred             HhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeech----------hhhhhhccccCCcceEEEEecCCCccee
Confidence            112233453  5567899999995 99999999999999986          3445678999999999999999887899


Q ss_pred             EEeeCCCcEEEEe
Q psy4577         314 LSASDDHTICLWD  326 (384)
Q Consensus       314 ~s~s~Dg~i~iwd  326 (384)
                      |||+.||.|++||
T Consensus       491 at~~w~G~Ikiwd  503 (503)
T KOG0282|consen  491 ATCGWDGLIKIWD  503 (503)
T ss_pred             EecccCceeEecC
Confidence            9999999999997

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=8.5e-26  Score=200.03  Aligned_cols=235  Identities=14%  Similarity=0.146  Sum_probs=158.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|+...+||+|+.|++|+|||+...+....      .....+..+.+|...|.+++|+|++.++|+|++.|++|++|
T Consensus        80 lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW  153 (568)
T PTZ00420         80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVK------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW  153 (568)
T ss_pred             EEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence            579998555899999999999999975321000      00123446789999999999999998778899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.+++.             ..           .+ .|  ...|.+++|+|+|..++    |+.+++||.++......+ 
T Consensus       154 Dl~tg~~-------------~~-----------~i-~~--~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl-  205 (568)
T PTZ00420        154 DIENEKR-------------AF-----------QI-NM--PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF-  205 (568)
T ss_pred             ECCCCcE-------------EE-----------EE-ec--CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE-
Confidence            9987511             00           01 11  34688999999999887    889999998654331111 


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                                                                                      
T Consensus       206 --------------------------------------------------------------------------------  205 (568)
T PTZ00420        206 --------------------------------------------------------------------------------  205 (568)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEeecCCc-----eEEEEEcCCCCcEEEEEeCCC----cEEEEecCCCCCCCCCCCCccceee--ecCCCCceEEEEe
Q psy4577         237 IEIKINHEGE-----VNRARYMPQNPCVIATKTPSS----DVLVFDYTKHPSKPDPNGECHPDLR--LRGHQKEGYGLSW  305 (384)
Q Consensus       237 ~~~~~~~~~~-----v~~v~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~--~~~h~~~i~~~~~  305 (384)
                          .+|.+.     +....|++++. ++++++.|+    .|+|||++.         ...++..  +..+.+.+.....
T Consensus       206 ----~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~---------~~~pl~~~~ld~~~~~L~p~~D  271 (568)
T PTZ00420        206 ----HIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKN---------TTSALVTMSIDNASAPLIPHYD  271 (568)
T ss_pred             ----ecccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCC---------CCCceEEEEecCCccceEEeee
Confidence                122222     22344668875 677766564    799999963         1223333  3334444444444


Q ss_pred             CCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccc
Q psy4577         306 NPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEK  370 (384)
Q Consensus       306 s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~  370 (384)
                      .++| .+|++|+.|++|++|++..+.     +..+..+. +..++..++|.|.......-|....
T Consensus       272 ~~tg-~l~lsGkGD~tIr~~e~~~~~-----~~~l~~~~-s~~p~~g~~f~Pkr~~dv~~cEi~R  329 (568)
T PTZ00420        272 ESTG-LIYLIGKGDGNCRYYQHSLGS-----IRKVNEYK-SCSPFRSFGFLPKQICDVYKCEIGR  329 (568)
T ss_pred             CCCC-CEEEEEECCCeEEEEEccCCc-----EEeecccc-cCCCccceEEccccccCchhhhHhH
Confidence            5567 799999999999999998653     11233333 6678999999998776555565543

>KOG0265|consensus

Probab=99.95  E-value=1.3e-26  Score=179.16  Aligned_cols=233  Identities=19%  Similarity=0.270  Sum_probs=175.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      +.|.+|+. .|++++.|.+|+.||+++              .+..+.+++|.+-|++++-+.-|..++.|++.|+++|+|
T Consensus        96 l~~~~d~s-~i~S~gtDk~v~~wD~~t--------------G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~  160 (338)
T KOG0265|consen   96 LHGMRDGS-HILSCGTDKTVRGWDAET--------------GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLW  160 (338)
T ss_pred             eeeccCCC-EEEEecCCceEEEEeccc--------------ceeeehhccccceeeecCccccCCeEEEecCCCceEEEE
Confidence            46889997 599999999999999998              477888999999999999666677789999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |++..+.             ++.+..              .-.++++.|..++..++    |+.+++||++.......+.
T Consensus       161 D~R~k~~-------------~~t~~~--------------kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls  213 (338)
T KOG0265|consen  161 DIRKKEA-------------IKTFEN--------------KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS  213 (338)
T ss_pred             eecccch-------------hhcccc--------------ceeEEEEEecccccceeeccccCceeeeccccCcceEEee
Confidence            9986422             111111              22467899999887665    8999999997766655555


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      ++..                                       .|..+.+++.+..+.....|...+.|......+....
T Consensus       214 Gh~D---------------------------------------tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~  254 (338)
T KOG0265|consen  214 GHAD---------------------------------------TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC  254 (338)
T ss_pred             cccC---------------------------------------ceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence            5533                                       3555555566666666666666665555444444444


Q ss_pred             EEEEeecC----CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCe
Q psy4577         237 IEIKINHE----GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGY  312 (384)
Q Consensus       237 ~~~~~~~~----~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~  312 (384)
                      +....+|.    ......+|+|++. .+..|+.|..+++||..          ....++.+.||.+.|++++|+|.. .+
T Consensus       255 v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~----------~r~~lyklpGh~gsvn~~~Fhp~e-~i  322 (338)
T KOG0265|consen  255 VKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTT----------SRRILYKLPGHYGSVNEVDFHPTE-PI  322 (338)
T ss_pred             EEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecc----------cccEEEEcCCcceeEEEeeecCCC-cE
Confidence            45554443    3445788999994 89999999999999974          223567999999999999999997 59


Q ss_pred             EEEeeCCCcEEEEe
Q psy4577         313 LLSASDDHTICLWD  326 (384)
Q Consensus       313 l~s~s~Dg~i~iwd  326 (384)
                      |.+++.|.+|++=+
T Consensus       323 ils~~sdk~i~lge  336 (338)
T KOG0265|consen  323 ILSCSSDKTIYLGE  336 (338)
T ss_pred             EEEeccCceeEeec
Confidence            99999999998744

>KOG0266|consensus

Probab=99.95  E-value=2.8e-26  Score=202.96  Aligned_cols=234  Identities=21%  Similarity=0.279  Sum_probs=172.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. ++++|+.|++|+|||++..             ...++++.||...|++++|+|++. ++++|+.|++||||
T Consensus       209 ~~fs~d~~-~l~s~s~D~tiriwd~~~~-------------~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriW  273 (456)
T KOG0266|consen  209 VAFSPDGS-YLLSGSDDKTLRIWDLKDD-------------GRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIW  273 (456)
T ss_pred             eEECCCCc-EEEEecCCceEEEeeccCC-------------CeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEE
Confidence            58999998 8999999999999999542             378899999999999999999996 99999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccc--cce
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFL--YDL  154 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~--~~~  154 (384)
                      |+.+++                        +...+.+|  ...|.+++|++++..++    |+.+++||..+...  ...
T Consensus       274 d~~~~~------------------------~~~~l~~h--s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~  327 (456)
T KOG0266|consen  274 DVRTGE------------------------CVRKLKGH--SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKL  327 (456)
T ss_pred             eccCCe------------------------EEEeeecc--CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeec
Confidence            998751                        11244556  66899999999999988    99999999987763  222


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      +......                                    . .+..+.+++++..++....|...+.|+.    ...
T Consensus       328 ~~~~~~~------------------------------------~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l----~~~  366 (456)
T KOG0266|consen  328 LSGAENS------------------------------------A-PVTSVQFSPNGKYLLSASLDRTLKLWDL----RSG  366 (456)
T ss_pred             ccCCCCC------------------------------------C-ceeEEEECCCCcEEEEecCCCeEEEEEc----cCC
Confidence            2222111                                    1 2344444455555555555544444322    111


Q ss_pred             eeEEEEeecCCc---eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC-CCceEEEEeCCCCC
Q psy4577         235 IEIEIKINHEGE---VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH-QKEGYGLSWNPSLN  310 (384)
Q Consensus       235 ~~~~~~~~~~~~---v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~s~~~~  310 (384)
                      .......+|...   +.+..+++.++ ++++|+.|+.|++||+.        +  ...+..+.+| ...+..++|+|.. 
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~--------s--~~~~~~l~~h~~~~~~~~~~~~~~-  434 (456)
T KOG0266|consen  367 KSVGTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSS--------S--GGILQRLEGHSKAAVSDLSSHPTE-  434 (456)
T ss_pred             cceeeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCC--------c--cchhhhhcCCCCCceeccccCCCc-
Confidence            123333455543   44455567785 99999999999999985        2  2345578899 8899999999997 


Q ss_pred             CeEEEee--CCCcEEEEecC
Q psy4577         311 GYLLSAS--DDHTICLWDIN  328 (384)
Q Consensus       311 ~~l~s~s--~Dg~i~iwd~~  328 (384)
                      .++++++  .|+.|++|...
T Consensus       435 ~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  435 NLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CeeeecCcCCCceEEEecCC
Confidence            7999999  78999999764

>KOG0295|consensus

Probab=99.95  E-value=1.3e-26  Score=183.69  Aligned_cols=239  Identities=18%  Similarity=0.218  Sum_probs=185.8

Q ss_pred             CCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeee
Q psy4577          41 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHAL  120 (384)
Q Consensus        41 ~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (384)
                      +|.+...+.||..+|+.+-|+|+-. ++++++.|++|++||..+++.                        ...+.||  
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~------------------------e~~LrGH--  149 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGEL------------------------ERSLRGH--  149 (406)
T ss_pred             CCCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhh------------------------hhhhhcc--
Confidence            3456667789999999999999999 889999999999999988522                        2456677  


Q ss_pred             ccCeeEEEEecCceeee----cceeeeeccccc-cccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCC
Q psy4577         121 EWPSLTAQWLPDVTRVI----NEEYKIWKKNTP-FLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDE  195 (384)
Q Consensus       121 ~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (384)
                      .+.+..++|+..|+.++    |-++++||..+. .+.....++..                                   
T Consensus       150 t~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h-----------------------------------  194 (406)
T KOG0295|consen  150 TDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH-----------------------------------  194 (406)
T ss_pred             ccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCccc-----------------------------------
Confidence            56699999999999988    667899998653 22222222222                                   


Q ss_pred             CCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q psy4577         196 QNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT  275 (384)
Q Consensus       196 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~  275 (384)
                          .+.++.+-|.+..++....|...+.|    .......+..+.+|...|..++.+.|| .++|+++.|.++++|-..
T Consensus       195 ----~vS~V~f~P~gd~ilS~srD~tik~W----e~~tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~  265 (406)
T KOG0295|consen  195 ----GVSSVFFLPLGDHILSCSRDNTIKAW----ECDTGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVA  265 (406)
T ss_pred             ----ceeeEEEEecCCeeeecccccceeEE----ecccceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEec
Confidence                23333333344445555556555544    333456688888999999999999999 599999999999999985


Q ss_pred             CCCCCCCCCCCccceeeecCCCCceEEEEeCCC--------------CCCeEEEeeCCCcEEEEecCCCCCCCcccccee
Q psy4577         276 KHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPS--------------LNGYLLSASDDHTICLWDINATPKENRVIDAKT  341 (384)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~--------------~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  341 (384)
                              ...+  ...++.|+-+|-+++|-|.              +..++++++.|++|++||+.++.       ++.
T Consensus       266 --------t~~~--k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-------cL~  328 (406)
T KOG0295|consen  266 --------TKQC--KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-------CLF  328 (406)
T ss_pred             --------cchh--hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-------EEE
Confidence                    3433  3478999999999999762              11499999999999999999998       999


Q ss_pred             eeeccCCcEeEEEEecCCCccccccc
Q psy4577         342 IFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       342 ~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      ++.||...|..++|||-|+.++++..
T Consensus       329 tL~ghdnwVr~~af~p~Gkyi~ScaD  354 (406)
T KOG0295|consen  329 TLVGHDNWVRGVAFSPGGKYILSCAD  354 (406)
T ss_pred             EEecccceeeeeEEcCCCeEEEEEec
Confidence            99999999999999999999887743

>KOG0306|consensus

Probab=99.95  E-value=6.9e-26  Score=195.36  Aligned_cols=230  Identities=17%  Similarity=0.159  Sum_probs=160.0

Q ss_pred             ccCeeEEEEecCceeee---cceeeeeccccccccceeecccccccceeeeeccCCCC--CCCCccceeEEEEeeecc--
Q psy4577         121 EWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR--PEGKDYSIHRLILGTHTS--  193 (384)
Q Consensus       121 ~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--  193 (384)
                      ...|.+++++.+...++   .+++++|+..+..+...+...    -.++..+.|....  ...+...+..+.+.+...  
T Consensus       373 R~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E  448 (888)
T KOG0306|consen  373 RSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYIVLGTKNGELQVFDLASASLVE  448 (888)
T ss_pred             hhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc----cEEEEEecCCCceEEEeccCCceEEEEeehhhhhh
Confidence            56678888888887776   689999999876665443322    1345556665431  011111111111111111  


Q ss_pred             -CCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC--CCC---c-e--eEEEEeecCCceEEEEEcCCCCcEEEEEe
Q psy4577         194 -DEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS--VSG---K-I--EIEIKINHEGEVNRARYMPQNPCVIATKT  264 (384)
Q Consensus       194 -~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~---~-~--~~~~~~~~~~~v~~v~~~p~~~~~l~s~s  264 (384)
                       -+.+...|+++++.+++..+....-|...+.|...--  ..+   + +  ...+...-...|.|+.+||+++ +||.+=
T Consensus       449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaVsL  527 (888)
T KOG0306|consen  449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAVSL  527 (888)
T ss_pred             hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEEEe
Confidence             1233456899999999999999888888776633111  111   1 1  1112334568899999999996 999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee
Q psy4577         265 PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT  344 (384)
Q Consensus       265 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  344 (384)
                      -|.+++||-+.          ..+-..++.||.-||.|+..|||. .+++|||.|..|+||-+.-+.       |-+.+.
T Consensus       528 LdnTVkVyflD----------tlKFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGD-------CHKS~f  589 (888)
T KOG0306|consen  528 LDNTVKVYFLD----------TLKFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGD-------CHKSFF  589 (888)
T ss_pred             ccCeEEEEEec----------ceeeeeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccch-------hhhhhh
Confidence            99999999885          234566899999999999999997 899999999999999999998       999999


Q ss_pred             ccCCcEeEEEEecCCCccccccccccccee
Q psy4577         345 GHTAVVELELIERLTKKADPVCTLEKAKKK  374 (384)
Q Consensus       345 ~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~  374 (384)
                      +|...|.+|.|-|.... .-.|.-+.+.|+
T Consensus       590 AHdDSvm~V~F~P~~~~-FFt~gKD~kvKq  618 (888)
T KOG0306|consen  590 AHDDSVMSVQFLPKTHL-FFTCGKDGKVKQ  618 (888)
T ss_pred             cccCceeEEEEccccee-EEEecCcceEEe
Confidence            99999999999995544 444444444443

>KOG0313|consensus

Probab=99.95  E-value=4.7e-26  Score=181.46  Aligned_cols=252  Identities=18%  Similarity=0.282  Sum_probs=174.0

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCC--C
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVE--P   87 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~--~   87 (384)
                      +|+++|.|.++++|.++...          ...+......||...|-+++..++|. .++|||.|.++++|+.....  .
T Consensus       161 ~fvsas~Dqtl~Lw~~~~~~----------~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~  229 (423)
T KOG0313|consen  161 LFVSASMDQTLRLWKWNVGE----------NKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDE  229 (423)
T ss_pred             eEEEecCCceEEEEEecCch----------hhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCcccc
Confidence            69999999999999987521          11233344459999999999999999 77899999999999943321  1


Q ss_pred             ccchhheee-eeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceeeccccccc
Q psy4577          88 FDDAVEERV-INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMTHALEWP  163 (384)
Q Consensus        88 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~  163 (384)
                      +......+. ..+.-+.-....|.  -++.||  ..+|.++.|++.+...-   |.+++.||+........+.+..    
T Consensus       230 ~E~~s~~rrk~~~~~~~~~~r~P~--vtl~GH--t~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~k----  301 (423)
T KOG0313|consen  230 LESSSNRRRKKQKREKEGGTRTPL--VTLEGH--TEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNK----  301 (423)
T ss_pred             ccccchhhhhhhhhhhcccccCce--EEeccc--ccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCc----
Confidence            110000000 00000000111222  267778  78999999999543332   9999999998776644433221    


Q ss_pred             ceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeec
Q psy4577         164 SLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINH  243 (384)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  243 (384)
                                                          .+.++...+....++....|...+.|+... ..+......+.+|
T Consensus       302 ------------------------------------sl~~i~~~~~~~Ll~~gssdr~irl~DPR~-~~gs~v~~s~~gH  344 (423)
T KOG0313|consen  302 ------------------------------------SLNCISYSPLSKLLASGSSDRHIRLWDPRT-GDGSVVSQSLIGH  344 (423)
T ss_pred             ------------------------------------ceeEeecccccceeeecCCCCceeecCCCC-CCCceeEEeeecc
Confidence                                                123333333333344444444444443321 2467778889999


Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ++-|.++.|+|.+.++|++|+.|+++++||+|.         ...|+..+.+|...|.++.|+..  .+++|||.|.+|+
T Consensus       345 ~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS---------~k~plydI~~h~DKvl~vdW~~~--~~IvSGGaD~~l~  413 (423)
T KOG0313|consen  345 KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS---------TKAPLYDIAGHNDKVLSVDWNEG--GLIVSGGADNKLR  413 (423)
T ss_pred             hhhhhheecCCCCceEEEEEecCCeEEEEEecc---------CCCcceeeccCCceEEEEeccCC--ceEEeccCcceEE
Confidence            999999999999999999999999999999972         33488899999999999999875  4899999999999


Q ss_pred             EEecC
Q psy4577         324 LWDIN  328 (384)
Q Consensus       324 iwd~~  328 (384)
                      |+.-.
T Consensus       414 i~~~~  418 (423)
T KOG0313|consen  414 IFKGS  418 (423)
T ss_pred             Eeccc
Confidence            98654

>KOG0283|consensus

Probab=99.95  E-value=1.1e-26  Score=202.95  Aligned_cols=248  Identities=19%  Similarity=0.248  Sum_probs=163.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcC---------------------------cc-c-------------cc-----
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIG---------------------------EE-Q-------------ST-----   34 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~---------------------------~~-~-------------~~-----   34 (384)
                      ++|||||+ |||+||.|+.|+||.+....                           .+ .             .+     
T Consensus       273 mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p  351 (712)
T KOG0283|consen  273 MKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLP  351 (712)
T ss_pred             EEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCC
Confidence            47999998 89999999999999886500                           00 0             00     


Q ss_pred             CCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccc
Q psy4577          35 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDL  114 (384)
Q Consensus        35 ~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (384)
                      ........+.+..+.||.+.|.+|.|+.++-  |+|+|.|+|||+|++...+             .+++           
T Consensus       352 ~~~f~f~ekP~~ef~GHt~DILDlSWSKn~f--LLSSSMDKTVRLWh~~~~~-------------CL~~-----------  405 (712)
T KOG0283|consen  352 LKAFVFSEKPFCEFKGHTADILDLSWSKNNF--LLSSSMDKTVRLWHPGRKE-------------CLKV-----------  405 (712)
T ss_pred             CccccccccchhhhhccchhheecccccCCe--eEeccccccEEeecCCCcc-------------eeeE-----------
Confidence            0001112234556789999999999998755  6699999999999998742             2222           


Q ss_pred             eeeeeeccCeeEEEEecCce-eee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEe
Q psy4577         115 VMTHALEWPSLTAQWLPDVT-RVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILG  189 (384)
Q Consensus       115 ~~~~~~~~~v~~~~~~~~~~-~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (384)
                         ..+.+.|+|++|+|... +++    |+.+|||++....+....-.+                               
T Consensus       406 ---F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-------------------------------  451 (712)
T KOG0283|consen  406 ---FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-------------------------------  451 (712)
T ss_pred             ---EecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-------------------------------
Confidence               23377899999999764 444    999999999765553221111                               


Q ss_pred             eeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC-C--ceeE--EEEeecCCceEEEEEcCCCCcEEEEEe
Q psy4577         190 THTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS-G--KIEI--EIKINHEGEVNRARYMPQNPCVIATKT  264 (384)
Q Consensus       190 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~--~~~~--~~~~~~~~~v~~v~~~p~~~~~l~s~s  264 (384)
                               -.|.++.+.|+++..++..+++.+..+...+..- .  .+..  .+...|. .|+++.|.|....-++..+
T Consensus       452 ---------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTS  521 (712)
T KOG0283|consen  452 ---------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTS  521 (712)
T ss_pred             ---------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEec
Confidence                     1244444555554555555555444432211100 0  0000  0112344 8999999997655455558


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCccceeeecCCCC--ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCC
Q psy4577         265 PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK--EGYGLSWNPSLNGYLLSASDDHTICLWDINAT  330 (384)
Q Consensus       265 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~  330 (384)
                      .|..|||||.+.          ...+..|+|+..  .=....|+.|| .+|++++.|..|+||+....
T Consensus       522 nDSrIRI~d~~~----------~~lv~KfKG~~n~~SQ~~Asfs~Dg-k~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  522 NDSRIRIYDGRD----------KDLVHKFKGFRNTSSQISASFSSDG-KHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             CCCceEEEeccc----------hhhhhhhcccccCCcceeeeEccCC-CEEEEeecCceEEEEeCCCC
Confidence            999999999862          234557777643  33578999999 79999999999999998543

>KOG0308|consensus

Probab=99.95  E-value=1.4e-26  Score=196.47  Aligned_cols=231  Identities=19%  Similarity=0.227  Sum_probs=178.8

Q ss_pred             CCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEccc
Q psy4577           5 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVC   84 (384)
Q Consensus         5 p~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~   84 (384)
                      ..+.++|.|||.||.|++|++......        ........++.|++.|+++....+++ .|+|+|.|-+|++|+...
T Consensus        34 a~~~ryLfTgGRDg~i~~W~~~~d~~~--------~s~~~~asme~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~  104 (735)
T KOG0308|consen   34 APNGRYLFTGGRDGIIRLWSVTQDSNE--------PSTPYIASMEHHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHK  104 (735)
T ss_pred             CCCCceEEecCCCceEEEeccccccCC--------cccchhhhhhhhHhHHhhHHhhcCCC-ceEEecCCceEEEeeccc
Confidence            334448999999999999998753210        01124566789999999999999998 567999999999999865


Q ss_pred             CCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEE-ecCceeee----cceeeeeccccccccceeeccc
Q psy4577          85 VEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQW-LPDVTRVI----NEEYKIWKKNTPFLYDLVMTHA  159 (384)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~  159 (384)
                      .                      ......++..|  .+.|.++++ .++...++    |+.|.+||++....... ... 
T Consensus       105 ~----------------------~~~c~stir~H--~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~-~s~-  158 (735)
T KOG0308|consen  105 D----------------------NTFCMSTIRTH--KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV-ASF-  158 (735)
T ss_pred             C----------------------cchhHhhhhcc--cchheeeeecccCceeEEecCCCccEEEEEccCcchhhh-hhc-
Confidence            3                      12234566777  788999999 66666665    99999999976543110 000 


Q ss_pred             ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE
Q psy4577         160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI  239 (384)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  239 (384)
                                                           |.+...++                                   
T Consensus       159 -------------------------------------n~~t~~sl-----------------------------------  166 (735)
T KOG0308|consen  159 -------------------------------------NNVTVNSL-----------------------------------  166 (735)
T ss_pred             -------------------------------------cccccccC-----------------------------------
Confidence                                                 00000000                                   


Q ss_pred             EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      ..++...|.+++.++.+ .++++|+..+.+++||.+          .++.+..++||...|..+..++|| +.++|+|.|
T Consensus       167 ~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDpr----------t~~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSD  234 (735)
T KOG0308|consen  167 GSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPR----------TCKKIMKLRGHTDNVRVLLVNDDG-TRLLSASSD  234 (735)
T ss_pred             CCCCccceeeeecCCcc-eEEEecCcccceEEeccc----------cccceeeeeccccceEEEEEcCCC-CeEeecCCC
Confidence            01677889999999999 599999999999999986          334567889999999999999999 799999999


Q ss_pred             CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577         320 HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK  361 (384)
Q Consensus       320 g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  361 (384)
                      |+|++||+...+       ++.++..|+..|+++.-+|+-..
T Consensus       235 gtIrlWdLgqQr-------Cl~T~~vH~e~VWaL~~~~sf~~  269 (735)
T KOG0308|consen  235 GTIRLWDLGQQR-------CLATYIVHKEGVWALQSSPSFTH  269 (735)
T ss_pred             ceEEeeeccccc-------eeeeEEeccCceEEEeeCCCcce
Confidence            999999999988       99999999999999999876554

>KOG0306|consensus

Probab=99.94  E-value=5.2e-26  Score=196.14  Aligned_cols=205  Identities=16%  Similarity=0.180  Sum_probs=158.2

Q ss_pred             eeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeecc
Q psy4577          43 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEW  122 (384)
Q Consensus        43 ~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (384)
                      .++-+..+|.+.|.+++.+||+.++ ++||.|.+|++||..-....+ +    ...+.+++-...         .-..++
T Consensus       445 ~l~Eti~AHdgaIWsi~~~pD~~g~-vT~saDktVkfWdf~l~~~~~-g----t~~k~lsl~~~r---------tLel~d  509 (888)
T KOG0306|consen  445 SLVETIRAHDGAIWSISLSPDNKGF-VTGSADKTVKFWDFKLVVSVP-G----TQKKVLSLKHTR---------TLELED  509 (888)
T ss_pred             hhhhhhhccccceeeeeecCCCCce-EEecCCcEEEEEeEEEEeccC-c----ccceeeeeccce---------EEeccc
Confidence            3444556899999999999999955 699999999999985431100 0    000001110000         112367


Q ss_pred             CeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577         123 PSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH  198 (384)
Q Consensus       123 ~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (384)
                      .|.|+.+||||+.++    |.+|+++-+++.+.                                               
T Consensus       510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF-----------------------------------------------  542 (888)
T KOG0306|consen  510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF-----------------------------------------------  542 (888)
T ss_pred             cEEEEEEcCCCcEEEEEeccCeEEEEEecceee-----------------------------------------------
Confidence            799999999999887    77777753322111                                               


Q ss_pred             EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q psy4577         199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP  278 (384)
Q Consensus       199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~  278 (384)
                                                            ...+.+|.-+|.|+..+|+++ +++|||.|.+|+||-+.   
T Consensus       543 --------------------------------------flsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLd---  580 (888)
T KOG0306|consen  543 --------------------------------------FLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLD---  580 (888)
T ss_pred             --------------------------------------eeeecccccceeEEeccCCcC-eEEeccCCCceEEeccc---
Confidence                                                  334458999999999999995 99999999999999986   


Q ss_pred             CCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecC
Q psy4577         279 SKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERL  358 (384)
Q Consensus       279 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  358 (384)
                           -|.|.  .++.+|...|.++.|.|.. .++.|||.|+.|+-||-..-.       .++++.+|...|++++-+|+
T Consensus       581 -----FGDCH--KS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe-------~iq~L~~H~~ev~cLav~~~  645 (888)
T KOG0306|consen  581 -----FGDCH--KSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFE-------EIQKLDGHHSEVWCLAVSPN  645 (888)
T ss_pred             -----cchhh--hhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhh-------hheeeccchheeeeeEEcCC
Confidence                 45553  4889999999999999986 899999999999999999888       99999999999999999999


Q ss_pred             CCcccccc
Q psy4577         359 TKKADPVC  366 (384)
Q Consensus       359 ~~~~~~~c  366 (384)
                      |..+.+..
T Consensus       646 G~~vvs~s  653 (888)
T KOG0306|consen  646 GSFVVSSS  653 (888)
T ss_pred             CCeEEecc
Confidence            98776653

>KOG0772|consensus

Probab=99.94  E-value=1.1e-25  Score=186.29  Aligned_cols=297  Identities=15%  Similarity=0.143  Sum_probs=206.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      +++.|.|. .|++||.|.+|++||+......       ....+.+.-..+|  .|++++|++.|. .|+..+.....+|+
T Consensus       173 l~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas-------~~~fr~l~P~E~h--~i~sl~ys~Tg~-~iLvvsg~aqakl~  241 (641)
T KOG0772|consen  173 LAVDPSGA-RFVSGSLDYTVKFWDFQGMDAS-------MRSFRQLQPCETH--QINSLQYSVTGD-QILVVSGSAQAKLL  241 (641)
T ss_pred             eeecCCCc-eeeeccccceEEEEeccccccc-------chhhhccCccccc--ccceeeecCCCC-eEEEEecCcceeEE
Confidence            46789997 6999999999999999863210       0011222222345  699999999999 55577888899999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccce--eeeeeccCeeEEEEecCceeee-----cceeeeeccccccccc
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLV--MTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYD  153 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~  153 (384)
                      |-...+..              -+-....++..+.  .||  -..+++.+|+|..+..+     |+++|+|+++..+...
T Consensus       242 DRdG~~~~--------------e~~KGDQYI~Dm~nTKGH--ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~  305 (641)
T KOG0772|consen  242 DRDGFEIV--------------EFSKGDQYIRDMYNTKGH--IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL  305 (641)
T ss_pred             ccCCceee--------------eeeccchhhhhhhccCCc--eeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence            97664221              1122223332222  345  66788999999986554     9999999997654322


Q ss_pred             eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCC
Q psy4577         154 LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG  233 (384)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  233 (384)
                      .+..+...                                 ....+.+..+.+++++..+.+...|+.+..|.. +....
T Consensus       306 qVik~k~~---------------------------------~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~-~~~~v  351 (641)
T KOG0772|consen  306 QVIKTKPA---------------------------------GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK-GSRTV  351 (641)
T ss_pred             eEEeeccC---------------------------------CCcccCceeeecCCCcchhhhcccCCceeeeec-CCccc
Confidence            21111100                                 012234566677777777777778888877754 22333


Q ss_pred             ceeEEEEeecCC--ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC--CceEEEEeCCCC
Q psy4577         234 KIEIEIKINHEG--EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ--KEGYGLSWNPSL  309 (384)
Q Consensus       234 ~~~~~~~~~~~~--~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~~~~s~~~  309 (384)
                      +.......+|..  .|+||.||++|. +|++-+.|+++++||++.         ..+++....+-.  -+-+.++|||+.
T Consensus       352 ~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq---------~kkpL~~~tgL~t~~~~tdc~FSPd~  421 (641)
T KOG0772|consen  352 RPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQ---------FKKPLNVRTGLPTPFPGTDCCFSPDD  421 (641)
T ss_pred             ccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeeccc---------cccchhhhcCCCccCCCCccccCCCc
Confidence            444566678887  999999999994 999999999999999973         334555554432  356889999997


Q ss_pred             CCeEEEeeC------CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccceeeE
Q psy4577         310 NGYLLSASD------DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKKKE  376 (384)
Q Consensus       310 ~~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~~~  376 (384)
                       ++|+||..      -|++.++|..+..       .++++.-....|..+.|||--+++...|.....+-+.+
T Consensus       422 -kli~TGtS~~~~~~~g~L~f~d~~t~d-------~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  422 -KLILTGTSAPNGMTAGTLFFFDRMTLD-------TVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD  486 (641)
T ss_pred             -eEEEecccccCCCCCceEEEEecccee-------eEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence             79999864      3789999999887       88888777888999999998887777766555444443

>KOG0973|consensus

Probab=99.94  E-value=1.9e-25  Score=200.34  Aligned_cols=257  Identities=20%  Similarity=0.305  Sum_probs=173.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcc----cccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCe
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEE----QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI   76 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~   76 (384)
                      |.|+|||+ +||+||.|+.|.||+....+..    .......--..+....+.+|...|.+++|+|++. +|+|+|.|++
T Consensus        75 VR~S~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~Dns  152 (942)
T KOG0973|consen   75 VRFSPDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNS  152 (942)
T ss_pred             EEECCCCC-eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccce
Confidence            47999998 8999999999999998741100    0001111223457788899999999999999999 8899999999


Q ss_pred             EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccc
Q psy4577          77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~  152 (384)
                      |.+|+..+.+                        +...+.+|  ...|..+.|.|-|++++    |+++++|+...-.+.
T Consensus       153 Viiwn~~tF~------------------------~~~vl~~H--~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~  206 (942)
T KOG0973|consen  153 VIIWNAKTFE------------------------LLKVLRGH--QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE  206 (942)
T ss_pred             EEEEccccce------------------------eeeeeecc--cccccceEECCccCeeeeecCCceEEEEEcccceee
Confidence            9999987631                        12345566  67788999999999999    999999997552222


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccc-ccCcCCCCCCccCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASN-YDTDKGDFGGFGSV  231 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~  231 (384)
                      +.+...-.+.                                 ...-.+..++++|++..+.... .......... -..
T Consensus       207 k~It~pf~~~---------------------------------~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I-ieR  252 (942)
T KOG0973|consen  207 KSITKPFEES---------------------------------PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI-IER  252 (942)
T ss_pred             EeeccchhhC---------------------------------CCcceeeecccCCCcCeecchhhccCCcceeEE-Eec
Confidence            2222111110                                 1111334444444444433322 1111100000 001


Q ss_pred             CCceeEEEEeecCCceEEEEEcCC--------C----C----cEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec-
Q psy4577         232 SGKIEIEIKINHEGEVNRARYMPQ--------N----P----CVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR-  294 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~v~~~p~--------~----~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-  294 (384)
                      ...-.-..+.+|.+++.+++|+|.        |    .    ..+|+||.|+.|-||..          +...|+.... 
T Consensus       253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T----------~~~RPl~vi~~  322 (942)
T KOG0973|consen  253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT----------ALPRPLFVIHN  322 (942)
T ss_pred             CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec----------CCCCchhhhhh
Confidence            112224557799999999999982        1    1    17899999999999996          3444553332 


Q ss_pred             CCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCC
Q psy4577         295 GHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINAT  330 (384)
Q Consensus       295 ~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~  330 (384)
                      -....|.+++|+||| ..|+.||.||+|.+..++..
T Consensus       323 lf~~SI~DmsWspdG-~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  323 LFNKSIVDMSWSPDG-FSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             hhcCceeeeeEcCCC-CeEEEEecCCeEEEEEcchH
Confidence            234689999999999 89999999999999999765

>KOG0973|consensus

Probab=99.94  E-value=6.2e-26  Score=203.50  Aligned_cols=258  Identities=17%  Similarity=0.302  Sum_probs=171.1

Q ss_pred             CCCCCCCCceEEEee--CCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~   78 (384)
                      |+.+|++. .+|||+  .|+.++||+.+.-.++..+....  -+..+..+..|.+.|+|+.|+|||. +||+||+|+.|.
T Consensus        19 Idv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~--l~k~l~~m~~h~~sv~CVR~S~dG~-~lAsGSDD~~v~   94 (942)
T KOG0973|consen   19 IDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNEN--LPKHLCTMDDHDGSVNCVRFSPDGS-YLASGSDDRLVM   94 (942)
T ss_pred             EEecCCce-eEecCCccccccceeeccccccchhhhhhcc--cchhheeeccccCceeEEEECCCCC-eEeeccCcceEE
Confidence            35789997 699999  89999999986533222221111  3566777789999999999999999 789999999999


Q ss_pred             EEEcccC---CCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccc
Q psy4577          79 ILSVVCV---EPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFL  151 (384)
Q Consensus        79 vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~  151 (384)
                      ||.-...   ..+...+..    ..+..|+.     ...+.+|  ...|..++|+|++..++    |.+|.+|+..+-..
T Consensus        95 iW~~~~~~~~~~fgs~g~~----~~vE~wk~-----~~~l~~H--~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~  163 (942)
T KOG0973|consen   95 IWERAEIGSGTVFGSTGGA----KNVESWKV-----VSILRGH--DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL  163 (942)
T ss_pred             EeeecccCCcccccccccc----cccceeeE-----EEEEecC--CCccceeccCCCccEEEEecccceEEEEcccccee
Confidence            9998741   111110001    11222321     2355566  77899999999999887    89999988755322


Q ss_pred             cceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC
Q psy4577         152 YDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV  231 (384)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  231 (384)
                      .                                                                               
T Consensus       164 ~-------------------------------------------------------------------------------  164 (942)
T KOG0973|consen  164 L-------------------------------------------------------------------------------  164 (942)
T ss_pred             e-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC-----C---------------CC--------
Q psy4577         232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK-----P---------------DP--------  283 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~-----~---------------~~--------  283 (384)
                            ..+.+|.+.|.++.|.|-|+ +||+-++|++|+||++..-..+     +               .+        
T Consensus       165 ------~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  165 ------KVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             ------eeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence                  22234444555555555553 5555555555555543320000     0               00        


Q ss_pred             --------------CCCccceeeecCCCCceEEEEeCC----CCCC------------eEEEeeCCCcEEEEecCCCCCC
Q psy4577         284 --------------NGECHPDLRLRGHQKEGYGLSWNP----SLNG------------YLLSASDDHTICLWDINATPKE  333 (384)
Q Consensus       284 --------------~~~~~~~~~~~~h~~~i~~~~~s~----~~~~------------~l~s~s~Dg~i~iwd~~~~~~~  333 (384)
                                    .+....-..|-||.+++.+++|+|    ....            .+|+||.|++|-||.....+  
T Consensus       238 nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R--  315 (942)
T KOG0973|consen  238 NAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR--  315 (942)
T ss_pred             hhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC--
Confidence                          123333457889999999999998    1111            68999999999999998777  


Q ss_pred             Cccccceeeeec-cCCcEeEEEEecCCCcccccc
Q psy4577         334 NRVIDAKTIFTG-HTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       334 ~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~c  366 (384)
                           |+..... ....|.+++|+|||-.+.++.
T Consensus       316 -----Pl~vi~~lf~~SI~DmsWspdG~~LfacS  344 (942)
T KOG0973|consen  316 -----PLFVIHNLFNKSIVDMSWSPDGFSLFACS  344 (942)
T ss_pred             -----chhhhhhhhcCceeeeeEcCCCCeEEEEe
Confidence                 5554433 467899999999999877653

>KOG0310|consensus

Probab=99.94  E-value=6.7e-26  Score=186.22  Aligned_cols=216  Identities=16%  Similarity=0.209  Sum_probs=173.9

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .|-.||+ |||.|...|.|+|+|.++              ...+..+.+|+.+|..+.|+|++..++++|++|+.+++||
T Consensus        75 ~fR~DG~-LlaaGD~sG~V~vfD~k~--------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d  139 (487)
T KOG0310|consen   75 DFRSDGR-LLAAGDESGHVKVFDMKS--------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD  139 (487)
T ss_pred             EeecCCe-EEEccCCcCcEEEecccc--------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence            5777897 999999999999999654              3577888999999999999999987899999999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceee
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~  156 (384)
                      +.+..                        ....+.+|  .+.|.+.+|+|....++     ||+||+||.+....     
T Consensus       140 ~s~a~------------------------v~~~l~~h--tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-----  188 (487)
T KOG0310|consen  140 LSTAY------------------------VQAELSGH--TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-----  188 (487)
T ss_pred             cCCcE------------------------EEEEecCC--cceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-----
Confidence            98741                        11134456  78899999999987665     99999998753211     


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (487)
T KOG0310|consen  189 --------------------------------------------------------------------------------  188 (487)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ......|..+|..+.+-|.|. ++|+++ ...|+|||+.        .|. +.+..+..|...|+|+++..++ ..|+||
T Consensus       189 ~v~elnhg~pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~--------~G~-qll~~~~~H~KtVTcL~l~s~~-~rLlS~  256 (487)
T KOG0310|consen  189 RVVELNHGCPVESVLALPSGS-LIASAG-GNSVKVWDLT--------TGG-QLLTSMFNHNKTVTCLRLASDS-TRLLSG  256 (487)
T ss_pred             eeEEecCCCceeeEEEcCCCC-EEEEcC-CCeEEEEEec--------CCc-eehhhhhcccceEEEEEeecCC-ceEeec
Confidence            112236888999999999996 889877 4589999995        233 3344555599999999999998 799999


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                      |-|+.|++||+.+.+       .+..+. ..++|.+++.+|++..+.
T Consensus       257 sLD~~VKVfd~t~~K-------vv~s~~-~~~pvLsiavs~dd~t~v  295 (487)
T KOG0310|consen  257 SLDRHVKVFDTTNYK-------VVHSWK-YPGPVLSIAVSPDDQTVV  295 (487)
T ss_pred             ccccceEEEEccceE-------EEEeee-cccceeeEEecCCCceEE
Confidence            999999999988877       677665 678999999999887543

>KOG0288|consensus

Probab=99.94  E-value=2.2e-26  Score=185.25  Aligned_cols=260  Identities=13%  Similarity=0.228  Sum_probs=180.7

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .|-++.. .|+||+.|..|++|++...+            .++..++.|..++|+++.|.+++.+ +++++.|+.+++|+
T Consensus       182 ~~l~~sd-tlatgg~Dr~Ik~W~v~~~k------------~~~~~tLaGs~g~it~~d~d~~~~~-~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  182 EFLRNSD-TLATGGSDRIIKLWNVLGEK------------SELISTLAGSLGNITSIDFDSDNKH-VIAASNDKNLRLWN  247 (459)
T ss_pred             EEccCcc-hhhhcchhhhhhhhhcccch------------hhhhhhhhccCCCcceeeecCCCce-EEeecCCCceeeee
Confidence            4556655 69999999999999987532            4677888998999999999999994 45889999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~  157 (384)
                      +...+                        +..++.||  .+.|.++.|......++    |.++++||+....+...+..
T Consensus       248 vd~~r------------------------~~~TLsGH--tdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~  301 (459)
T KOG0288|consen  248 VDSLR------------------------LRHTLSGH--TDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP  301 (459)
T ss_pred             ccchh------------------------hhhhhccc--ccceeeehhhccccceeeccccchhhhhhhhhhheeccccc
Confidence            97641                        23467777  77899999988877655    89999999987655333221


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI  237 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  237 (384)
                      ....   ..+                                .+.       ...+....+|...+.|+.    ...- .
T Consensus       302 ~S~c---nDI--------------------------------~~~-------~~~~~SgH~DkkvRfwD~----Rs~~-~  334 (459)
T KOG0288|consen  302 GSQC---NDI--------------------------------VCS-------ISDVISGHFDKKVRFWDI----RSAD-K  334 (459)
T ss_pred             cccc---cce--------------------------------Eec-------ceeeeecccccceEEEec----cCCc-e
Confidence            1110   000                                000       011122233433333321    1111 2


Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC--CCceEEEEeCCCCCCeEEE
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH--QKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~s~~~~~~l~s  315 (384)
                      .....-.+.|+++..++++. -+.+++.|.++.+.|++.        ........-.+.  ....+.+.|||++ .|+++
T Consensus       335 ~~sv~~gg~vtSl~ls~~g~-~lLsssRDdtl~viDlRt--------~eI~~~~sA~g~k~asDwtrvvfSpd~-~YvaA  404 (459)
T KOG0288|consen  335 TRSVPLGGRVTSLDLSMDGL-ELLSSSRDDTLKVIDLRT--------KEIRQTFSAEGFKCASDWTRVVFSPDG-SYVAA  404 (459)
T ss_pred             eeEeecCcceeeEeeccCCe-EEeeecCCCceeeeeccc--------ccEEEEeeccccccccccceeEECCCC-ceeee
Confidence            22234456899999999995 666779999999999973        222222122221  1238899999999 69999


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeeeccCC--cEeEEEEecCCCccccc
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTA--VVELELIERLTKKADPV  365 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~~  365 (384)
                      ||.||+|+||++.+++       +...+....+  .|++++|+|.|..+.++
T Consensus       405 GS~dgsv~iW~v~tgK-------lE~~l~~s~s~~aI~s~~W~~sG~~Llsa  449 (459)
T KOG0288|consen  405 GSADGSVYIWSVFTGK-------LEKVLSLSTSNAAITSLSWNPSGSGLLSA  449 (459)
T ss_pred             ccCCCcEEEEEccCce-------EEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence            9999999999999998       7777765333  59999999999987765

>KOG1446|consensus

Probab=99.94  E-value=2e-24  Score=168.61  Aligned_cols=265  Identities=16%  Similarity=0.226  Sum_probs=187.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEec--CCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE--DNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~--D~~i~   78 (384)
                      |.|+++|. +|++++.|.+++|||...              ...+.++..++-.|..++|-.....++ .++.  |.+||
T Consensus        20 l~fs~~G~-~litss~dDsl~LYd~~~--------------g~~~~ti~skkyG~~~~~Fth~~~~~i-~sStk~d~tIr   83 (311)
T KOG1446|consen   20 LDFSDDGL-LLITSSEDDSLRLYDSLS--------------GKQVKTINSKKYGVDLACFTHHSNTVI-HSSTKEDDTIR   83 (311)
T ss_pred             EEecCCCC-EEEEecCCCeEEEEEcCC--------------CceeeEeecccccccEEEEecCCceEE-EccCCCCCceE
Confidence            57999998 688899999999999986              466777777778899999976666344 5555  88999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccce
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDL  154 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~  154 (384)
                      .-++.+.             +.           .+.+.||  ...|.+++.+|.+..++    |++|++||++...+...
T Consensus        84 yLsl~dN-------------ky-----------lRYF~GH--~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~  137 (311)
T KOG1446|consen   84 YLSLHDN-------------KY-----------LRYFPGH--KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL  137 (311)
T ss_pred             EEEeecC-------------ce-----------EEEcCCC--CceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE
Confidence            9988764             11           2355677  67799999999997776    99999999997777655


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      +......  +  +.+.|.+.            ++....  ..+.+.+..+.           .+|.            +.
T Consensus       138 l~~~~~p--i--~AfDp~GL------------ifA~~~--~~~~IkLyD~R-----------s~dk------------gP  176 (311)
T KOG1446|consen  138 LNLSGRP--I--AAFDPEGL------------IFALAN--GSELIKLYDLR-----------SFDK------------GP  176 (311)
T ss_pred             EecCCCc--c--eeECCCCc------------EEEEec--CCCeEEEEEec-----------ccCC------------CC
Confidence            4433221  1  22333321            111111  01133333333           1111            12


Q ss_pred             eeEEEEe-ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCce---EEEEeCCCCC
Q psy4577         235 IEIEIKI-NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEG---YGLSWNPSLN  310 (384)
Q Consensus       235 ~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i---~~~~~s~~~~  310 (384)
                      +...... +-....+.+.|+|+|+ .++.++..+.+++.|.-        +|.  .+.++.++...-   .+.+|+||+ 
T Consensus       177 F~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf--------~G~--~~~tfs~~~~~~~~~~~a~ftPds-  244 (311)
T KOG1446|consen  177 FTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAF--------DGT--VKSTFSGYPNAGNLPLSATFTPDS-  244 (311)
T ss_pred             ceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEcc--------CCc--EeeeEeeccCCCCcceeEEECCCC-
Confidence            2122111 3456789999999998 55555888999999975        554  344666665422   678999998 


Q ss_pred             CeEEEeeCCCcEEEEecCCCCCCCccccceeeeec-cCCcEeEEEEecCCCccccccc
Q psy4577         311 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTG-HTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       311 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      +++++|+.||+|.+|+++++.       .+..+++ +.+++.++.|+|.....++.|+
T Consensus       245 ~Fvl~gs~dg~i~vw~~~tg~-------~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  245 KFVLSGSDDGTIHVWNLETGK-------KVAVLRGPNGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             cEEEEecCCCcEEEEEcCCCc-------EeeEecCCCCCCccccccCCceeeeeecCc
Confidence            799999999999999999998       8888988 7999999999999988777764

>KOG0275|consensus

Probab=99.94  E-value=2e-25  Score=174.70  Aligned_cols=263  Identities=17%  Similarity=0.237  Sum_probs=186.4

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .|||||+ +|++|+-||.|-|||..+.+-.      .+...+..-.+.-|.++|.|+.|+.|.. +||+|+.||.|++|.
T Consensus       220 ~FSPDgq-yLvsgSvDGFiEVWny~~GKlr------KDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWr  291 (508)
T KOG0275|consen  220 RFSPDGQ-YLVSGSVDGFIEVWNYTTGKLR------KDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWR  291 (508)
T ss_pred             eeCCCCc-eEeeccccceeeeehhccchhh------hhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEEEE
Confidence            5999997 8999999999999998763200      1111222223345788999999999999 889999999999999


Q ss_pred             cccCCCcc-------------------chhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c
Q psy4577          82 VVCVEPFD-------------------DAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N  138 (384)
Q Consensus        82 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d  138 (384)
                      +.++..+.                   ........+..+++-......+.+.+.||  ...|..+.|.++|..++    |
T Consensus       292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH--sSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH--SSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc--cccccceEEcCCCCeEEEecCC
Confidence            99884321                   11122334556666666666666777888  67788999999999988    9


Q ss_pred             ceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccc
Q psy4577         139 EEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNY  218 (384)
Q Consensus       139 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  218 (384)
                      |+|++|+..+..+...+.....+.++.++...|....         .+++-    ...|.++|..+.             
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe---------h~iVC----Nrsntv~imn~q-------------  423 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE---------HFIVC----NRSNTVYIMNMQ-------------  423 (508)
T ss_pred             ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc---------eEEEE----cCCCeEEEEecc-------------
Confidence            9999999988777666666555555555555554420         11111    123344444443             


Q ss_pred             cCcCCCCCCccCCCCceeEEEE--eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC
Q psy4577         219 DTDKGDFGGFGSVSGKIEIEIK--INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH  296 (384)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h  296 (384)
                                    +.......  ....+...+.+.+|.|. ++.+.+.|+.++-|...        ++..+  .++.-|
T Consensus       424 --------------GQvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~--------sG~LE--~tl~Vh  478 (508)
T KOG0275|consen  424 --------------GQVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVL--------SGKLE--RTLPVH  478 (508)
T ss_pred             --------------ceEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEee--------cCcee--eeeecc
Confidence                          11111111  11345667788899996 88889999999999986        55443  367789


Q ss_pred             CCceEEEEeCCCCCCeEEEeeCCCcEEEEe
Q psy4577         297 QKEGYGLSWNPSLNGYLLSASDDHTICLWD  326 (384)
Q Consensus       297 ~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd  326 (384)
                      ...+..++-+|.. ++|||-+.||.+++|.
T Consensus       479 EkdvIGl~HHPHq-NllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  479 EKDVIGLTHHPHQ-NLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccccccCccc-chhhhhcccchhhhcC
Confidence            9999999999997 7999999999999994

>KOG0302|consensus

Probab=99.94  E-value=2.3e-25  Score=177.48  Aligned_cols=255  Identities=17%  Similarity=0.274  Sum_probs=185.4

Q ss_pred             ceEEEeeCCCeEEEeecCCcCccccc--CCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCC
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQST--EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVE   86 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~   86 (384)
                      .+.|+-+..|.|.||++...-.....  ........+.++++.+|.+.=+.|+|||-....|+||..-+.|++|...++ 
T Consensus       166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g-  244 (440)
T KOG0302|consen  166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG-  244 (440)
T ss_pred             ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC-
Confidence            47888899999999998643211111  011223456788999999999999999965555678888899999998774 


Q ss_pred             CccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeeccccc
Q psy4577          87 PFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALE  161 (384)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~  161 (384)
                                      -|..+..    .+.+|  ..+|..++|+|....++     |++|+|||++.......       
T Consensus       245 ----------------~W~vd~~----Pf~gH--~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~-------  295 (440)
T KOG0302|consen  245 ----------------SWKVDQR----PFTGH--TKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA-------  295 (440)
T ss_pred             ----------------ceeecCc----ccccc--ccchhhhccCCccCceEEeeecCceEEEEEecCCCccce-------
Confidence                            2443332    33355  77889999999987665     99999999865322100       


Q ss_pred             ccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEe
Q psy4577         162 WPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKI  241 (384)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  241 (384)
                                                                                                 +. ..
T Consensus       296 ---------------------------------------------------------------------------~~-~k  299 (440)
T KOG0302|consen  296 ---------------------------------------------------------------------------VS-TK  299 (440)
T ss_pred             ---------------------------------------------------------------------------eE-ee
Confidence                                                                                       11 14


Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      +|.+.|+.|.|+...+ +||+|++||+++|||+|...       ...|+..+..|..+|++|.|+|.....|+++|.|.+
T Consensus       300 Ah~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~-------~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q  371 (440)
T KOG0302|consen  300 AHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFK-------SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ  371 (440)
T ss_pred             ccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhcc-------CCCcceeEEeccCCeeEEEeccccCceEEeccCCCc
Confidence            7889999999999886 99999999999999999643       225788999999999999999976679999999999


Q ss_pred             EEEEecCCCCC---------CCccccceeeeeccC--CcEeEEEEecCCCcccccccccccceeeEE
Q psy4577         322 ICLWDINATPK---------ENRVIDAKTIFTGHT--AVVELELIERLTKKADPVCTLEKAKKKKEV  377 (384)
Q Consensus       322 i~iwd~~~~~~---------~~~~~~~~~~~~~h~--~~v~~~~~sp~~~~~~~~c~~~~~~~~~~~  377 (384)
                      |.|||+....-         .+-.-.|-+.|.-|.  ..|-.+.||++-+-+......++...++.|
T Consensus       372 itiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfktI  438 (440)
T KOG0302|consen  372 ITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKTI  438 (440)
T ss_pred             EEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEEec
Confidence            99999975432         010001222333453  468999999999977666666665555544

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=4.6e-24  Score=188.22  Aligned_cols=239  Identities=11%  Similarity=0.122  Sum_probs=161.4

Q ss_pred             CCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCC-CCeeEEEecccccceEEEEEcc-CCCcEEEEEecCCeEEEE
Q psy4577           3 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG-PPELLFIHGGHTAKISDFSWNP-NEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         3 fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~gh~~~V~~l~~~~-~~~~~l~s~s~D~~i~vw   80 (384)
                      +++++.. +++++.+..+..|+.......  ....+.+ .+.....+.||.+.|++++|+| ++. +|++|+.|++|++|
T Consensus        28 ~~~d~~~-~~~~n~~~~a~~w~~~gg~~v--~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~-~LaSgS~DgtIkIW  103 (493)
T PTZ00421         28 ALWDCSN-TIACNDRFIAVPWQQLGSTAV--LKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ-KLFTASEDGTIMGW  103 (493)
T ss_pred             ccCCCCC-cEeECCceEEEEEecCCceEE--eeccccccCCCCCceEeCCCCCEEEEEEcCCCCC-EEEEEeCCCEEEEE
Confidence            4567664 777777888888886532100  0000000 0111123579999999999999 666 88999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCc-eeee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV-TRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |+.......               ....  ....+.+|  ...|.+++|+|++ ..++    |++|++||+.....    
T Consensus       104 di~~~~~~~---------------~~~~--~l~~L~gH--~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~----  160 (493)
T PTZ00421        104 GIPEEGLTQ---------------NISD--PIVHLQGH--TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA----  160 (493)
T ss_pred             ecCCCcccc---------------ccCc--ceEEecCC--CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE----
Confidence            997631100               0001  11234456  6779999999986 4454    89999998754211    


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (493)
T PTZ00421        161 --------------------------------------------------------------------------------  160 (493)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCc-eEEEEeCCCCCCeEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE-GYGLSWNPSLNGYLL  314 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~~~~s~~~~~~l~  314 (384)
                       ...+..|...|.+++|+|++. +|++++.|++|+|||++        ++.  .+..+.+|.+. +..+.|++++ ..|+
T Consensus       161 -~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~r--------sg~--~v~tl~~H~~~~~~~~~w~~~~-~~iv  227 (493)
T PTZ00421        161 -VEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPR--------DGT--IVSSVEAHASAKSQRCLWAKRK-DLII  227 (493)
T ss_pred             -EEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECC--------CCc--EEEEEecCCCCcceEEEEcCCC-CeEE
Confidence             112235778899999999995 99999999999999997        333  45577888764 4578899987 5666


Q ss_pred             Eee----CCCcEEEEecCCCCCCCccccceeeeecc-CCcEeEEEEecCCCccccccc
Q psy4577         315 SAS----DDHTICLWDINATPKENRVIDAKTIFTGH-TAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       315 s~s----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      +++    .|+.|++||+++..+      ++.....+ ...+....|+|++..+...+.
T Consensus       228 t~G~s~s~Dr~VklWDlr~~~~------p~~~~~~d~~~~~~~~~~d~d~~~L~lggk  279 (493)
T PTZ00421        228 TLGCSKSQQRQIMLWDTRKMAS------PYSTVDLDQSSALFIPFFDEDTNLLYIGSK  279 (493)
T ss_pred             EEecCCCCCCeEEEEeCCCCCC------ceeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence            654    479999999987652      44444333 345667788999987665543

>KOG2445|consensus

Probab=99.94  E-value=3.7e-24  Score=166.31  Aligned_cols=270  Identities=16%  Similarity=0.271  Sum_probs=171.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEE-ccC-CCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW-NPN-EPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~-~~~-~~~~l~s~s~D~~i~   78 (384)
                      |.|.+.|+ .+|||+.|++|+|||....          .+...+....+.|.+.|..+.| +|. |+ .+|++|.|++++
T Consensus        19 Vs~D~~GR-RmAtCSsDq~vkI~d~~~~----------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq-vvA~cS~Drtv~   86 (361)
T KOG2445|consen   19 VSFDFYGR-RMATCSSDQTVKIWDSTSD----------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQ-VVATCSYDRTVS   86 (361)
T ss_pred             eeecccCc-eeeeccCCCcEEEEeccCC----------CCceEEeeeEEecCCcEEEEEecCccccc-eEEEEecCCcee
Confidence            46888898 5999999999999997542          2345667778899999999999 555 55 899999999999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceee--e----cceeeeecccccc--
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRV--I----NEEYKIWKKNTPF--  150 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~----d~~v~~w~~~~~~--  150 (384)
                      ||.=....          .+..-+.|.......       .....|+.++|.|....+  +    ||.+|||+.-.+.  
T Consensus        87 iWEE~~~~----------~~~~~~~Wv~~ttl~-------DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL  149 (361)
T KOG2445|consen   87 IWEEQEKS----------EEAHGRRWVRRTTLV-------DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL  149 (361)
T ss_pred             eeeecccc----------cccccceeEEEEEee-------cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence            99753210          000112233222211       125678999999986433  2    9999998764432  


Q ss_pred             -ccceeecc--------cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCc
Q psy4577         151 -LYDLVMTH--------ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTD  221 (384)
Q Consensus       151 -~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~  221 (384)
                       ...+....        ....++.++.|.+....       -..+.+|...             -++.-+...+..++..
T Consensus       150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~-------~p~iAvgs~e-------------~a~~~~~~~Iye~~e~  209 (361)
T KOG2445|consen  150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH-------EPLIAVGSDE-------------DAPHLNKVKIYEYNEN  209 (361)
T ss_pred             ccchhhhhhhhccCCcccccCcceEEeecccccc-------CceEEEEccc-------------CCccccceEEEEecCC
Confidence             11111111        13334556666543221       1112222221             1111112222233333


Q ss_pred             CCCCCCccCCCCceeEEEEeecCCceEEEEEcCCC---CcEEEEEeCCCcEEEEecCCCCCCC----------CCCCCcc
Q psy4577         222 KGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQN---PCVIATKTPSSDVLVFDYTKHPSKP----------DPNGECH  288 (384)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~---~~~l~s~s~dg~i~iwd~~~~~~~~----------~~~~~~~  288 (384)
                      .+.|         ..+..+.+|..+|+.|+|.|+-   -++||+++.|| |+||.++......          ......+
T Consensus       210 ~rKw---------~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~  279 (361)
T KOG2445|consen  210 GRKW---------LKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE  279 (361)
T ss_pred             ccee---------eeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceE
Confidence            3222         2244556899999999999962   25899999999 9999998422111          0011223


Q ss_pred             ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCC
Q psy4577         289 PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINAT  330 (384)
Q Consensus       289 ~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~  330 (384)
                      .+..+.+|++.|..+.|+-.| ..|+|.|.||.||+|...-.
T Consensus       280 ~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  280 KVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             EeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhhh
Confidence            345678899999999999999 79999999999999987644

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=3.2e-24  Score=203.85  Aligned_cols=243  Identities=14%  Similarity=0.177  Sum_probs=157.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc-CCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~-~~~~~l~s~s~D~~i~v   79 (384)
                      ++|+|....+||+++.||+|+|||+.+              .+.+..+.+|.+.|++++|+| ++. +|+||+.|++|++
T Consensus       538 l~~~~~~~~~las~~~Dg~v~lWd~~~--------------~~~~~~~~~H~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~i  602 (793)
T PLN00181        538 ICWNSYIKSQVASSNFEGVVQVWDVAR--------------SQLVTEMKEHEKRVWSIDYSSADPT-LLASGSDDGSVKL  602 (793)
T ss_pred             EEeccCCCCEEEEEeCCCeEEEEECCC--------------CeEEEEecCCCCCEEEEEEcCCCCC-EEEEEcCCCEEEE
Confidence            357776555899999999999999986              366778889999999999997 555 8899999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec-Cceeee----cceeeeeccccccc-cc
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP-DVTRVI----NEEYKIWKKNTPFL-YD  153 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~----d~~v~~w~~~~~~~-~~  153 (384)
                      ||+..+..             +..           +..   ...+.++.|.+ ++..++    |+.+++||++.... ..
T Consensus       603 Wd~~~~~~-------------~~~-----------~~~---~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~  655 (793)
T PLN00181        603 WSINQGVS-------------IGT-----------IKT---KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC  655 (793)
T ss_pred             EECCCCcE-------------EEE-----------Eec---CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce
Confidence            99976411             111           111   23577889964 567666    89999999876432 22


Q ss_pred             eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC--
Q psy4577         154 LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV--  231 (384)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--  231 (384)
                      .+..+...  +..+.|.+                                      +..+.+...|...+.|+.....  
T Consensus       656 ~~~~h~~~--V~~v~f~~--------------------------------------~~~lvs~s~D~~ikiWd~~~~~~~  695 (793)
T PLN00181        656 TMIGHSKT--VSYVRFVD--------------------------------------SSTLVSSSTDNTLKLWDLSMSISG  695 (793)
T ss_pred             EecCCCCC--EEEEEEeC--------------------------------------CCEEEEEECCCEEEEEeCCCCccc
Confidence            22222211  22233321                                      1111222222222222211000  


Q ss_pred             CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCC---CCCCccceeeecCCCCceEEEEeCCC
Q psy4577         232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPD---PNGECHPDLRLRGHQKEGYGLSWNPS  308 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~h~~~i~~~~~s~~  308 (384)
                      .....+..+.+|...++.++|+|++. +||+|+.|+.|++|+.........   .......-.....|...|.+++|+|+
T Consensus       696 ~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~  774 (793)
T PLN00181        696 INETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ  774 (793)
T ss_pred             cCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence            01122455668999999999999995 999999999999999752110000   00000000122445678999999999


Q ss_pred             CCCeEEEeeCCCcEEEEec
Q psy4577         309 LNGYLLSASDDHTICLWDI  327 (384)
Q Consensus       309 ~~~~l~s~s~Dg~i~iwd~  327 (384)
                      + .+|++|+.||.|+||++
T Consensus       775 ~-~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        775 S-STLVAANSTGNIKILEM  792 (793)
T ss_pred             C-CeEEEecCCCcEEEEec
Confidence            8 79999999999999986

>KOG0278|consensus

Probab=99.93  E-value=4e-25  Score=166.82  Aligned_cols=191  Identities=21%  Similarity=0.279  Sum_probs=147.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+.|.. +|+||+.+..++|||++.+.             .....+.||++.|..+-|+...+ .++|++.|++||+|
T Consensus       106 ~af~~ds~-~lltgg~ekllrvfdln~p~-------------App~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLW  170 (334)
T KOG0278|consen  106 VAFSQDSN-YLLTGGQEKLLRVFDLNRPK-------------APPKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLW  170 (334)
T ss_pred             EEecccch-hhhccchHHHhhhhhccCCC-------------CCchhhcCCCCcceeEEEeccCc-eEEeeccCCceEEE
Confidence            57888886 69999999999999998633             23345579999999999998888 55688999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceeec
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~  157 (384)
                      |..++..             ++..              ....+|.++..+++|..+.   .++|.+||...-..   +..
T Consensus       171 D~rTgt~-------------v~sL--------------~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~---lKs  220 (334)
T KOG0278|consen  171 DHRTGTE-------------VQSL--------------EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL---LKS  220 (334)
T ss_pred             EeccCcE-------------EEEE--------------ecCCCCcceeeccCCCEEEEecCceeEEeccccccc---eee
Confidence            9988621             1111              1245688999999998775   67788877643111   110


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI  237 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  237 (384)
                                                                                                      
T Consensus       221 --------------------------------------------------------------------------------  220 (334)
T KOG0278|consen  221 --------------------------------------------------------------------------------  220 (334)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceee-ecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLR-LRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                         ..-...|.+...+|+. .++++|++|+.++.||+.        ++..  +.. .+||.++|.|+.|+|+| -..|+|
T Consensus       221 ---~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~--------TgeE--i~~~nkgh~gpVhcVrFSPdG-E~yAsG  285 (334)
T KOG0278|consen  221 ---YKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYN--------TGEE--IGSYNKGHFGPVHCVRFSPDG-ELYASG  285 (334)
T ss_pred             ---ccCccccccccccCCC-ceEEecCcceEEEEEecc--------CCce--eeecccCCCCceEEEEECCCC-ceeecc
Confidence               0113357788889988 599999999999999997        4432  334 48999999999999999 599999


Q ss_pred             eCCCcEEEEecCCCC
Q psy4577         317 SDDHTICLWDINATP  331 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~  331 (384)
                      |.||+|+||....++
T Consensus       286 SEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  286 SEDGTIRLWQTTPGK  300 (334)
T ss_pred             CCCceEEEEEecCCC
Confidence            999999999998776

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=1.5e-23  Score=185.89  Aligned_cols=227  Identities=15%  Similarity=0.141  Sum_probs=150.5

Q ss_pred             eeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhh
Q psy4577          14 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVE   93 (384)
Q Consensus        14 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~   93 (384)
                      |+.++.|++|+...              ...+..+.+|.+.|.+++|+|+...+||||+.|++|++||+..+....    
T Consensus        50 GG~~gvI~L~~~~r--------------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~----  111 (568)
T PTZ00420         50 GGLIGAIRLENQMR--------------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV----  111 (568)
T ss_pred             CCceeEEEeeecCC--------------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc----
Confidence            45566777777654              245677889999999999999844489999999999999997531100    


Q ss_pred             eeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeecccccccceeee
Q psy4577          94 ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ  168 (384)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~  168 (384)
                              .  ....+  ...+.+|  ...|.+++|+|++..++     |+++++||+.+....                
T Consensus       112 --------~--~i~~p--~~~L~gH--~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~----------------  161 (568)
T PTZ00420        112 --------K--EIKDP--QCILKGH--KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA----------------  161 (568)
T ss_pred             --------c--ccccc--eEEeecC--CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE----------------
Confidence                    0  00001  1133455  57799999999987543     899999998543210                


Q ss_pred             eccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceE
Q psy4577         169 WLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVN  248 (384)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  248 (384)
                                                                                           .. ..|...|.
T Consensus       162 ---------------------------------------------------------------------~~-i~~~~~V~  171 (568)
T PTZ00420        162 ---------------------------------------------------------------------FQ-INMPKKLS  171 (568)
T ss_pred             ---------------------------------------------------------------------EE-EecCCcEE
Confidence                                                                                 00 02345689


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEE-----EEeCCCCCCeEEEeeCCC---
Q psy4577         249 RARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG-----LSWNPSLNGYLLSASDDH---  320 (384)
Q Consensus       249 ~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-----~~~s~~~~~~l~s~s~Dg---  320 (384)
                      +++|+|+|. +|++++.|+.|+|||++        .+.  .+..+.+|.+.+..     ..|++++ .+|+|++.|+   
T Consensus       172 SlswspdG~-lLat~s~D~~IrIwD~R--------sg~--~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~  239 (568)
T PTZ00420        172 SLKWNIKGN-LLSGTCVGKHMHIIDPR--------KQE--IASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNM  239 (568)
T ss_pred             EEEECCCCC-EEEEEecCCEEEEEECC--------CCc--EEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCc
Confidence            999999995 89999999999999997        332  45578899875433     3456887 6899988775   


Q ss_pred             -cEEEEecCCCCCCCccccceeeeec--cCCcEeEEEEecCCCcccccccccccceeeEE
Q psy4577         321 -TICLWDINATPKENRVIDAKTIFTG--HTAVVELELIERLTKKADPVCTLEKAKKKKEV  377 (384)
Q Consensus       321 -~i~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~~c~~~~~~~~~~~  377 (384)
                       +|+|||++....      ++..+..  +.+.+..... ++...+..++..+...+..++
T Consensus       240 R~VkLWDlr~~~~------pl~~~~ld~~~~~L~p~~D-~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        240 REMKLWDLKNTTS------ALVTMSIDNASAPLIPHYD-ESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             cEEEEEECCCCCC------ceEEEEecCCccceEEeee-CCCCCEEEEEECCCeEEEEEc
Confidence             799999996432      5555443  3333333333 443333344444444444443

>KOG0772|consensus

Probab=99.93  E-value=9.6e-25  Score=180.72  Aligned_cols=260  Identities=13%  Similarity=0.087  Sum_probs=178.1

Q ss_pred             CCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeee
Q psy4577          41 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHAL  120 (384)
Q Consensus        41 ~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (384)
                      |...-..+.+|+..|.++++.|.|. .++|||.|.+|++||+......            .+-++.-.     ...    
T Consensus       156 P~shEi~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas------------~~~fr~l~-----P~E----  213 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDAS------------MRSFRQLQ-----PCE----  213 (641)
T ss_pred             CccceEeccCCceEEEEeeecCCCc-eeeeccccceEEEEeccccccc------------chhhhccC-----ccc----
Confidence            4445566789999999999999999 6679999999999999875211            00011111     111    


Q ss_pred             ccCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCC
Q psy4577         121 EWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQ  196 (384)
Q Consensus       121 ~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (384)
                      ...|.+++|++.|..++    ..+.+++|..+.....+..+....         .+...                  .+.
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI---------~Dm~n------------------TKG  266 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI---------RDMYN------------------TKG  266 (641)
T ss_pred             ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh---------hhhhc------------------cCC
Confidence            33688999999998776    667788887766555444332211         00000                  012


Q ss_pred             CeEEEEEeecCCCCc-ccccccccCcCCCCCCccCCCCceeEEE--EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy4577         197 NHLLIASVQLPNEDA-QFDASNYDTDKGDFGGFGSVSGKIEIEI--KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFD  273 (384)
Q Consensus       197 ~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd  273 (384)
                      +...+.+..+.+..+ .++...+|...++|.+.........+..  ..+-.-.++.++|+|+++ ++|+|+.||.|.+|+
T Consensus       267 Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~  345 (641)
T KOG0772|consen  267 HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWD  345 (641)
T ss_pred             ceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeee
Confidence            333455556655544 4566788888888866444322221111  123345788999999996 899999999999999


Q ss_pred             cCCCCCCCCCCCCccc-eeeecCCCC--ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeecc--CC
Q psy4577         274 YTKHPSKPDPNGECHP-DLRLRGHQK--EGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH--TA  348 (384)
Q Consensus       274 ~~~~~~~~~~~~~~~~-~~~~~~h~~--~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h--~~  348 (384)
                      .+..        ...+ +..-.+|..  .|+||+||+|| ++|+|-|.|+++++||++..++      ++.+..+-  .-
T Consensus       346 ~~~~--------~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLrq~kk------pL~~~tgL~t~~  410 (641)
T KOG0772|consen  346 KGSR--------TVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLRQFKK------PLNVRTGLPTPF  410 (641)
T ss_pred             cCCc--------ccccceEeeeccCCCCceeEEEecccc-chhhhccCCCceeeeecccccc------chhhhcCCCccC
Confidence            8632        2222 334456776  89999999999 8999999999999999998765      77766653  34


Q ss_pred             cEeEEEEecCCCccccc
Q psy4577         349 VVELELIERLTKKADPV  365 (384)
Q Consensus       349 ~v~~~~~sp~~~~~~~~  365 (384)
                      +-++++|||+.+.+.+.
T Consensus       411 ~~tdc~FSPd~kli~TG  427 (641)
T KOG0772|consen  411 PGTDCCFSPDDKLILTG  427 (641)
T ss_pred             CCCccccCCCceEEEec
Confidence            57899999999876655

>KOG0292|consensus

Probab=99.93  E-value=5.3e-24  Score=187.10  Aligned_cols=216  Identities=18%  Similarity=0.344  Sum_probs=160.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |.|||+++ ++++|+.|-.|+||+.++              .++++++.||-+-|..+.|++.-+ -|+|+|+|.|||||
T Consensus        57 v~FH~~qp-lFVSGGDDykIkVWnYk~--------------rrclftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIW  120 (1202)
T KOG0292|consen   57 VDFHPTQP-LFVSGGDDYKIKVWNYKT--------------RRCLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIW  120 (1202)
T ss_pred             eeecCCCC-eEEecCCccEEEEEeccc--------------ceehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEE
Confidence            57999998 899999999999999987              589999999999999999999999 45699999999999


Q ss_pred             EcccCCCcc------------------chhheeeeeeeEEEeccCCcccc-----------------------------c
Q psy4577          81 SVVCVEPFD------------------DAVEERVINEEYKIWKKNTPFLY-----------------------------D  113 (384)
Q Consensus        81 d~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~  113 (384)
                      +..+.+.+.                  +.....+.+.++++|+..+-...                             .
T Consensus       121 Nwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~  200 (1202)
T KOG0292|consen  121 NWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH  200 (1202)
T ss_pred             eccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence            998764321                  22334567889999986542111                             1


Q ss_pred             ceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEe
Q psy4577         114 LVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILG  189 (384)
Q Consensus       114 ~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (384)
                      ++.||  .-.|..++|+|.-..++    |..|++|.++..+.                                      
T Consensus       201 VLEGH--DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa--------------------------------------  240 (1202)
T KOG0292|consen  201 VLEGH--DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA--------------------------------------  240 (1202)
T ss_pred             eeccc--ccccceEEecCCcceEEecCCcceeeEEEeccccc--------------------------------------
Confidence            22333  34455666666655555    55566665432222                                      


Q ss_pred             eeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcE
Q psy4577         190 THTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDV  269 (384)
Q Consensus       190 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i  269 (384)
                                                                   ..+....+|.+.|.++-|+|.- ++++|.|.|++|
T Consensus       241 ---------------------------------------------WEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksi  274 (1202)
T KOG0292|consen  241 ---------------------------------------------WEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSI  274 (1202)
T ss_pred             ---------------------------------------------eeehhhhcccCCcceEEecCcc-ceeEecCCCccE
Confidence                                                         1233334899999999999977 599999999999


Q ss_pred             EEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCC
Q psy4577         270 LVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINAT  330 (384)
Q Consensus       270 ~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~  330 (384)
                      ||||+..          ...+.+++...+.-+.++-+|.. +++|+ +.|+-+.++.++..
T Consensus       275 rVwDm~k----------Rt~v~tfrrendRFW~laahP~l-NLfAA-gHDsGm~VFkleRE  323 (1202)
T KOG0292|consen  275 RVWDMTK----------RTSVQTFRRENDRFWILAAHPEL-NLFAA-GHDSGMIVFKLERE  323 (1202)
T ss_pred             EEEeccc----------ccceeeeeccCCeEEEEEecCCc-ceeee-ecCCceEEEEEccc
Confidence            9999852          23567888778889999999997 45554 56666777776643

>KOG0310|consensus

Probab=99.93  E-value=5e-24  Score=175.31  Aligned_cols=229  Identities=13%  Similarity=0.180  Sum_probs=173.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|||..+.=+|+.+. -++.||+..+.              ....++.--.+.|.+++|..||. +||.|...|.|+|+
T Consensus        32 l~fsp~~P~d~aVt~S-~rvqly~~~~~--------------~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~V~vf   95 (487)
T KOG0310|consen   32 LCFSPKHPYDFAVTSS-VRVQLYSSVTR--------------SVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESGHVKVF   95 (487)
T ss_pred             EecCCCCCCceEEecc-cEEEEEecchh--------------hhhhhHHhhccceeEEEeecCCe-EEEccCCcCcEEEe
Confidence            5799987765777654 46999998762              33344445567999999999999 99899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~  155 (384)
                      |+.+.                        .+...+..|  +.++..+.|+|++..++     |+.+++||..+...    
T Consensus        96 D~k~r------------------------~iLR~~~ah--~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v----  145 (487)
T KOG0310|consen   96 DMKSR------------------------VILRQLYAH--QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV----  145 (487)
T ss_pred             ccccH------------------------HHHHHHhhc--cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE----
Confidence            95441                        122344455  77899999999887665     66667776643221    


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (487)
T KOG0310|consen  146 --------------------------------------------------------------------------------  145 (487)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                       .....+|++.|.+.+|+|...++++|||.||+||+||++.        .. ..+.++. |..+|-++.+-|.| ..+||
T Consensus       146 -~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~--------~~-~~v~eln-hg~pVe~vl~lpsg-s~ias  213 (487)
T KOG0310|consen  146 -QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS--------LT-SRVVELN-HGCPVESVLALPSG-SLIAS  213 (487)
T ss_pred             -EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc--------CC-ceeEEec-CCCceeeEEEcCCC-CEEEE
Confidence             2233479999999999998878999999999999999973        22 3444554 88899999999998 69999


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccccccccee
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKK  374 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~  374 (384)
                      ++. ..|++||+.++.+      .+..+..|...|+|+++..++.-+.+.......+-+
T Consensus       214 AgG-n~vkVWDl~~G~q------ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVf  265 (487)
T KOG0310|consen  214 AGG-NSVKVWDLTTGGQ------LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVF  265 (487)
T ss_pred             cCC-CeEEEEEecCCce------ehhhhhcccceEEEEEeecCCceEeecccccceEEE
Confidence            887 5899999996652      555555699999999999998877776555555443

>KOG0299|consensus

Probab=99.93  E-value=6.8e-24  Score=173.28  Aligned_cols=274  Identities=14%  Similarity=0.151  Sum_probs=187.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccc--cC----CCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecC
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQS--TE----DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED   74 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~--~~----~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D   74 (384)
                      |+++|++. +..+++.|++|.=|++.+......  +.    .....+.+.-.  .+|.+.|.+++.++||+ +||+|+.|
T Consensus       148 vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~avS~Dgk-ylatgg~d  223 (479)
T KOG0299|consen  148 VALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAVSSDGK-YLATGGRD  223 (479)
T ss_pred             EEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEEcCCCc-EEEecCCC
Confidence            46789987 799999999999999986432111  10    00111222111  48999999999999999 77899999


Q ss_pred             CeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccc
Q psy4577          75 NIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPF  150 (384)
Q Consensus        75 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~  150 (384)
                      ..|.||+.++.+.+                        +.+.+|  .+.|.+++|...-..++    |+++++|+++...
T Consensus       224 ~~v~Iw~~~t~ehv------------------------~~~~gh--r~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s  277 (479)
T KOG0299|consen  224 RHVQIWDCDTLEHV------------------------KVFKGH--RGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS  277 (479)
T ss_pred             ceEEEecCcccchh------------------------hccccc--ccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence            99999999886322                        124455  67899999987766555    9999999999888


Q ss_pred             ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577         151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS  230 (384)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  230 (384)
                      +.+.+.+|+...  ..+                                     .......-+.+..-|.+.+.|..   
T Consensus       278 ~vetlyGHqd~v--~~I-------------------------------------daL~reR~vtVGgrDrT~rlwKi---  315 (479)
T KOG0299|consen  278 YVETLYGHQDGV--LGI-------------------------------------DALSRERCVTVGGRDRTVRLWKI---  315 (479)
T ss_pred             HHHHHhCCccce--eee-------------------------------------chhcccceEEeccccceeEEEec---
Confidence            777777775432  111                                     11111111122223333333322   


Q ss_pred             CCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee------------cCCCC
Q psy4577         231 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL------------RGHQK  298 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------------~~h~~  298 (384)
                       + .-....+.+|.+.+-|++|-.+.  .|++||+||.|.+|++....          |+.+.            ..+..
T Consensus       316 -~-eesqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KKk----------plf~~~~AHgv~~~~~~~~~~~  381 (479)
T KOG0299|consen  316 -P-EESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKKK----------PLFTSRLAHGVIPELDPVNGNF  381 (479)
T ss_pred             -c-ccceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecccC----------ceeEeeccccccCCcccccccc
Confidence             0 11133455788899999998765  68999999999999986322          22211            11223


Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         299 EGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       299 ~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      +|++++..|.. .++||||.+|.|++|-+..+-.   .+.++..+. -.+.|++++|+++|+.+.+.
T Consensus       382 Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r---~i~~l~~ls-~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  382 WITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLR---AINLLYSLS-LVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             ceeeeEecccC-ceEEecCCCCceEEEEecCCcc---ccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence            89999999986 7999999999999999998742   233555555 67889999999999954443

>KOG0316|consensus

Probab=99.92  E-value=4.3e-24  Score=159.86  Aligned_cols=194  Identities=14%  Similarity=0.130  Sum_probs=154.7

Q ss_pred             eeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeecc
Q psy4577          43 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEW  122 (384)
Q Consensus        43 ~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (384)
                      +.+..+.+|+++|..+.|+-+|+ +.++|+.|++||+|++..+                        .+.++..+|  ..
T Consensus         8 kr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg------------------------~liktYsgh--G~   60 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRG------------------------ALIKTYSGH--GH   60 (307)
T ss_pred             hhceeecccccceEEEEEccCCC-EEEEcCCCceEEeeccccc------------------------ceeeeecCC--Cc
Confidence            45677889999999999999999 5569999999999988654                        233455566  44


Q ss_pred             CeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577         123 PSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH  198 (384)
Q Consensus       123 ~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (384)
                      .|..++.+.|...++    |..+.+||+++++.                                               
T Consensus        61 EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv-----------------------------------------------   93 (307)
T KOG0316|consen   61 EVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV-----------------------------------------------   93 (307)
T ss_pred             eeeeccccccccccccCCCCceEEEEEcccCee-----------------------------------------------
Confidence            577777777777666    77777777755443                                               


Q ss_pred             EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q psy4577         199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP  278 (384)
Q Consensus       199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~  278 (384)
                                                            ...+.+|.+.|+.+.|+.... .+++|+.|.++|+||.+   
T Consensus        94 --------------------------------------~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCR---  131 (307)
T KOG0316|consen   94 --------------------------------------DRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCR---  131 (307)
T ss_pred             --------------------------------------eeecccccceeeEEEecCcce-EEEeccccceeEEEEcc---
Confidence                                                  333457899999999999884 99999999999999999   


Q ss_pred             CCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecC
Q psy4577         279 SKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERL  358 (384)
Q Consensus       279 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  358 (384)
                           +...+|++.+......|.++..+.   ..|++||.||+++.||++.++       ...-+.  ..+|+++.|+++
T Consensus       132 -----S~s~ePiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~-------l~sDy~--g~pit~vs~s~d  194 (307)
T KOG0316|consen  132 -----SRSFEPIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGT-------LSSDYF--GHPITSVSFSKD  194 (307)
T ss_pred             -----cCCCCccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecce-------eehhhc--CCcceeEEecCC
Confidence                 667788989988889999999874   469999999999999999987       444443  457999999999


Q ss_pred             CCccccccccc
Q psy4577         359 TKKADPVCTLE  369 (384)
Q Consensus       359 ~~~~~~~c~~~  369 (384)
                      ++...+.|...
T Consensus       195 ~nc~La~~l~s  205 (307)
T KOG0316|consen  195 GNCSLASSLDS  205 (307)
T ss_pred             CCEEEEeeccc
Confidence            99766665443

>KOG0268|consensus

Probab=99.92  E-value=2.4e-24  Score=170.82  Aligned_cols=255  Identities=15%  Similarity=0.273  Sum_probs=165.9

Q ss_pred             CCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcc
Q psy4577           4 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVV   83 (384)
Q Consensus         4 sp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~   83 (384)
                      +|..-..+|+|+.||.|+|||+..              ..+..++..|.+.|..|++.. +  .+++++.|++|+.|.++
T Consensus        75 hp~~ls~~aSGs~DG~VkiWnlsq--------------R~~~~~f~AH~G~V~Gi~v~~-~--~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   75 HPNKLSTVASGSCDGEVKIWNLSQ--------------RECIRTFKAHEGLVRGICVTQ-T--SFFTVGDDKTVKQWKID  137 (433)
T ss_pred             CcchhhhhhccccCceEEEEehhh--------------hhhhheeecccCceeeEEecc-c--ceEEecCCcceeeeecc
Confidence            455534699999999999999987              477888999999999999987 3  45699999999999976


Q ss_pred             cCCC--c---------c---chhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeee
Q psy4577          84 CVEP--F---------D---DAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIW  144 (384)
Q Consensus        84 ~~~~--~---------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w  144 (384)
                      ....  +         .   .......-.+.+.+|+.....-.+.+.-  ..+.+.++.|+|..+.++     |+++.++
T Consensus       138 ~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smsw--G~Dti~svkfNpvETsILas~~sDrsIvLy  215 (433)
T KOG0268|consen  138 GPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSW--GADSISSVKFNPVETSILASCASDRSIVLY  215 (433)
T ss_pred             CCcceeeeccccccccccccccccccccCceeeecccccCCccceeec--CCCceeEEecCCCcchheeeeccCCceEEE
Confidence            5310  0         0   0000111234578888654322112111  134678999999988776     8999999


Q ss_pred             ccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCC
Q psy4577         145 KKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGD  224 (384)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~  224 (384)
                      |.++......+....   ....+.|+|...          .++.+    ++...++                .+|+..  
T Consensus       216 D~R~~~Pl~KVi~~m---RTN~IswnPeaf----------nF~~a----~ED~nlY----------------~~DmR~--  260 (433)
T KOG0268|consen  216 DLRQASPLKKVILTM---RTNTICWNPEAF----------NFVAA----NEDHNLY----------------TYDMRN--  260 (433)
T ss_pred             ecccCCccceeeeec---cccceecCcccc----------ceeec----cccccce----------------ehhhhh--
Confidence            987765433322111   122355655221          00000    0111111                122211  


Q ss_pred             CCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEE
Q psy4577         225 FGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLS  304 (384)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  304 (384)
                              -..++....+|...|..|+|+|.|+ -|++||.|.+||||..+.        +....+.-.+ --..|.++.
T Consensus       261 --------l~~p~~v~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~~--------~~SRdiYhtk-RMq~V~~Vk  322 (433)
T KOG0268|consen  261 --------LSRPLNVHKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNH--------GHSRDIYHTK-RMQHVFCVK  322 (433)
T ss_pred             --------hcccchhhcccceeEEEeccCCCcc-hhccccccceEEEeecCC--------CcchhhhhHh-hhheeeEEE
Confidence                    0112334457899999999999996 799999999999999862        2221111101 124699999


Q ss_pred             eCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577         305 WNPSLNGYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       305 ~s~~~~~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                      ||.|. ++++|||.|+.|++|......
T Consensus       323 ~S~Ds-kyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  323 YSMDS-KYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             Eeccc-cEEEecCCCcceeeeecchhh
Confidence            99997 899999999999999987654

>KOG4283|consensus

Probab=99.92  E-value=1.4e-23  Score=162.22  Aligned_cols=221  Identities=19%  Similarity=0.269  Sum_probs=143.3

Q ss_pred             CCCCCCceEEEeeCCCeEEEeecCCcCcccccC---CCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           3 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTE---DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         3 fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      ..|....++++|+.||.|.|||++...+.....   .....  .-...-.+|+-.|.++.|.|-...++.|+|.|.+++|
T Consensus        51 id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~--v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKV  128 (397)
T KOG4283|consen   51 IDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI--VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKV  128 (397)
T ss_pred             eccccceEEeecCCCccEEEEEeccccchhhccceeheeee--ccccCCccceeeeeeeEEeeecCceeecccccceEEE
Confidence            345555689999999999999998643111110   00000  0011124788999999999998889999999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeecceeeeeccccccccceeeccc
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHA  159 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~  159 (384)
                      ||..+.+.             ..              ...+++.|++-+++|-...                ..+     
T Consensus       129 WDtnTlQ~-------------a~--------------~F~me~~VYshamSp~a~s----------------HcL-----  160 (397)
T KOG4283|consen  129 WDTNTLQE-------------AV--------------DFKMEGKVYSHAMSPMAMS----------------HCL-----  160 (397)
T ss_pred             eeccccee-------------eE--------------EeecCceeehhhcChhhhc----------------ceE-----
Confidence            99987411             11              1122444555555553210                000     


Q ss_pred             ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE
Q psy4577         160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI  239 (384)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  239 (384)
                                                +..|+.    ...+++..+                ..+          .+ -+.
T Consensus       161 --------------------------iA~gtr----~~~VrLCDi----------------~SG----------s~-sH~  183 (397)
T KOG4283|consen  161 --------------------------IAAGTR----DVQVRLCDI----------------ASG----------SF-SHT  183 (397)
T ss_pred             --------------------------EEEecC----CCcEEEEec----------------cCC----------cc-eee
Confidence                                      001110    011112111                111          11 556


Q ss_pred             EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC---CC-CCCccce-eeecCCCCceEEEEeCCCCCCeEE
Q psy4577         240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP---DP-NGECHPD-LRLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~-~~~~~~~-~~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                      +.+|.+.|.+|.|+|..+..|++|+.||.||+||++.-+.-.   +. .+...|. ..-..|.+.+++++|+.++ .+++
T Consensus       184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~  262 (397)
T KOG4283|consen  184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLA  262 (397)
T ss_pred             eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhh
Confidence            779999999999999998899999999999999998542110   00 1111122 2345688999999999999 8999


Q ss_pred             EeeCCCcEEEEecCCCC
Q psy4577         315 SASDDHTICLWDINATP  331 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~~~  331 (384)
                      +++.|..+++|+..+++
T Consensus       263 ~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  263 SCGTDDRIRVWNMESGR  279 (397)
T ss_pred             hccCccceEEeecccCc
Confidence            99999999999998874

>KOG1036|consensus

Probab=99.92  E-value=3.4e-23  Score=161.02  Aligned_cols=266  Identities=14%  Similarity=0.151  Sum_probs=178.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|.+.. |++++.||++++||+...               .+...--|..++.+++|.++..  +++|+.||.|+.+
T Consensus        19 v~f~~~~~~-LLvssWDgslrlYdv~~~---------------~l~~~~~~~~plL~c~F~d~~~--~~~G~~dg~vr~~   80 (323)
T KOG1036|consen   19 VKFSPSSSD-LLVSSWDGSLRLYDVPAN---------------SLKLKFKHGAPLLDCAFADEST--IVTGGLDGQVRRY   80 (323)
T ss_pred             EEEcCcCCc-EEEEeccCcEEEEeccch---------------hhhhheecCCceeeeeccCCce--EEEeccCceEEEE
Confidence            578888874 666679999999999862               1222234778999999998665  6799999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.+++..                         .+..|  ..++.++.+++....++    |++|++||.+.........
T Consensus        81 Dln~~~~~-------------------------~igth--~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d  133 (323)
T KOG1036|consen   81 DLNTGNED-------------------------QIGTH--DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD  133 (323)
T ss_pred             EecCCcce-------------------------eeccC--CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc
Confidence            99885221                         23334  67889999998766665    9999999998633321111


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      ...   .+.++...            -.++++|+..    ..+.++.+...                .        ..+ 
T Consensus       134 ~~k---kVy~~~v~------------g~~LvVg~~~----r~v~iyDLRn~----------------~--------~~~-  169 (323)
T KOG1036|consen  134 QGK---KVYCMDVS------------GNRLVVGTSD----RKVLIYDLRNL----------------D--------EPF-  169 (323)
T ss_pred             cCc---eEEEEecc------------CCEEEEeecC----ceEEEEEcccc----------------c--------chh-
Confidence            110   11111111            1233443321    22333333210                0        000 


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC---------ceEEEEeCC
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK---------EGYGLSWNP  307 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~i~~~~~s~  307 (384)
                      .......+-.+++|++-|++. =++++|.||.|.+=.+...+      ........|+.|..         +|++|+|+|
T Consensus       170 q~reS~lkyqtR~v~~~pn~e-Gy~~sSieGRVavE~~d~s~------~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp  242 (323)
T KOG1036|consen  170 QRRESSLKYQTRCVALVPNGE-GYVVSSIEGRVAVEYFDDSE------EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP  242 (323)
T ss_pred             hhccccceeEEEEEEEecCCC-ceEEEeecceEEEEccCCch------HHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence            111112345689999999775 67778999999886554221      11123346777743         899999999


Q ss_pred             CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccc
Q psy4577         308 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEK  370 (384)
Q Consensus       308 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~  370 (384)
                      -. +.||||+.||.|.+||+.+.+       .+..+......|..++|+.+|..++..++...
T Consensus       243 ~~-~tfaTgGsDG~V~~Wd~~~rK-------rl~q~~~~~~SI~slsfs~dG~~LAia~sy~y  297 (323)
T KOG1036|consen  243 IH-GTFATGGSDGIVNIWDLFNRK-------RLKQLAKYETSISSLSFSMDGSLLAIASSYQY  297 (323)
T ss_pred             cc-ceEEecCCCceEEEccCcchh-------hhhhccCCCCceEEEEeccCCCeEEEEechhh
Confidence            86 799999999999999999988       78888777788999999999999887765443

>KOG2096|consensus

Probab=99.92  E-value=3.4e-23  Score=161.82  Aligned_cols=288  Identities=11%  Similarity=0.094  Sum_probs=180.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+.||. .|||++.|++|+||++..-. .        ...+.++..- .-+.-+.+.|.||.+.+++++-...++++|
T Consensus        92 ~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~-~--------~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   92 VAFSSDGK-KLATISGDRSIRLWDVRDFE-N--------KEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             eEEcCCCc-eeEEEeCCceEEEEecchhh-h--------hhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            57999998 79999999999999987410 0        0001111100 012457899999999888888888999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      .+...+.   +..    .....-|+...     .-..|  ...+..+-....+.+++    |..|.+|+..+..+. .+.
T Consensus       161 k~~K~~d---G~~----~~~~v~~D~~~-----f~~kh--~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~-~id  225 (420)
T KOG2096|consen  161 KLVKKTD---GSG----SHHFVHIDNLE-----FERKH--QVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQ-SID  225 (420)
T ss_pred             Eeeeccc---CCC----Ccccccccccc-----cchhc--ccceEEEeecCCceEEEEecCCCcEEEEecCCceee-eec
Confidence            8754311   000    00000011000     00011  23444555556666666    888999998743332 111


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc--
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK--  234 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--  234 (384)
                      +.                                       ........++|++..+.+..+-.....|...-...+.  
T Consensus       226 tn---------------------------------------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fq  266 (420)
T KOG2096|consen  226 TN---------------------------------------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQ  266 (420)
T ss_pred             cc---------------------------------------cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchh
Confidence            11                                       1122334456666666666676666666554443333  


Q ss_pred             --eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee----cCCCCceEEEEeCCC
Q psy4577         235 --IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL----RGHQKEGYGLSWNPS  308 (384)
Q Consensus       235 --~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~h~~~i~~~~~s~~  308 (384)
                        .....+.+|...|..++|+|+.. .++|.|.||++||||+.-.....   ...+.+.+.    ....+.-..++.+|.
T Consensus       267 ev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~~~---qDpk~Lk~g~~pl~aag~~p~RL~lsP~  342 (420)
T KOG2096|consen  267 EVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDVRYEAG---QDPKILKEGSAPLHAAGSEPVRLELSPS  342 (420)
T ss_pred             hhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEeeccceEecC---CCchHhhcCCcchhhcCCCceEEEeCCC
Confidence              34556789999999999999985 89999999999999987544321   111111111    112233348999999


Q ss_pred             CCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee-ccCCcEeEEEEecCCCcccccc
Q psy4577         309 LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-GHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       309 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      | ..||.+ ...+++++..+.++       ..-.+. .|...|+++.|+|+|+.++++.
T Consensus       343 g-~~lA~s-~gs~l~~~~se~g~-------~~~~~e~~h~~~Is~is~~~~g~~~atcG  392 (420)
T KOG2096|consen  343 G-DSLAVS-FGSDLKVFASEDGK-------DYPELEDIHSTTISSISYSSDGKYIATCG  392 (420)
T ss_pred             C-cEEEee-cCCceEEEEcccCc-------cchhHHHhhcCceeeEEecCCCcEEeeec
Confidence            8 566554 44689999999987       444443 4999999999999999988764

>KOG0288|consensus

Probab=99.92  E-value=2.1e-24  Score=173.91  Aligned_cols=232  Identities=16%  Similarity=0.218  Sum_probs=153.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|.+++.. +++++.|+.+++|++..              .++..++.||++.|+++.|..... -+++|+.|.+|++|
T Consensus       225 ~d~d~~~~~-~iAas~d~~~r~Wnvd~--------------~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~W  288 (459)
T KOG0288|consen  225 IDFDSDNKH-VIAASNDKNLRLWNVDS--------------LRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLW  288 (459)
T ss_pred             eeecCCCce-EEeecCCCceeeeeccc--------------hhhhhhhcccccceeeehhhcccc-ceeeccccchhhhh
Confidence            468888874 77778899999999986              578889999999999999988766 47899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCc--eeeecceeeeeccccccccceeecc
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV--TRVINEEYKIWKKNTPFLYDLVMTH  158 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~d~~v~~w~~~~~~~~~~~~~~  158 (384)
                      |+.......                  ..     +.    ...+..++..+..  ..-.|++||+||.+.......+..+
T Consensus       289 Dl~k~~C~k------------------t~-----l~----~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g  341 (459)
T KOG0288|consen  289 DLQKAYCSK------------------TV-----LP----GSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLG  341 (459)
T ss_pred             hhhhhheec------------------cc-----cc----cccccceEecceeeeecccccceEEEeccCCceeeEeecC
Confidence            997642110                  01     00    1122222222110  1123889999998776553322111


Q ss_pred             cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEE
Q psy4577         159 ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE  238 (384)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  238 (384)
                                                              ..+.++.++.++..++...-|.....++.....-......
T Consensus       342 ----------------------------------------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA  381 (459)
T KOG0288|consen  342 ----------------------------------------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA  381 (459)
T ss_pred             ----------------------------------------cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec
Confidence                                                    1344555555555555555454444332211100000000


Q ss_pred             EEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC
Q psy4577         239 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       239 ~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      .-.......+.+.|||++. ++|+||.||.|+||+..        .+.++......+....|++++|+|.| ..|++++.
T Consensus       382 ~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~--------tgKlE~~l~~s~s~~aI~s~~W~~sG-~~Llsadk  451 (459)
T KOG0288|consen  382 EGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVF--------TGKLEKVLSLSTSNAAITSLSWNPSG-SGLLSADK  451 (459)
T ss_pred             cccccccccceeEECCCCc-eeeeccCCCcEEEEEcc--------CceEEEEeccCCCCcceEEEEEcCCC-chhhcccC
Confidence            0011224489999999995 99999999999999997        56665555555444579999999999 79999999


Q ss_pred             CCcEEEE
Q psy4577         319 DHTICLW  325 (384)
Q Consensus       319 Dg~i~iw  325 (384)
                      ++.+.+|
T Consensus       452 ~~~v~lW  458 (459)
T KOG0288|consen  452 QKAVTLW  458 (459)
T ss_pred             CcceEec
Confidence            9999999

>KOG0300|consensus

Probab=99.92  E-value=1.9e-23  Score=163.19  Aligned_cols=296  Identities=14%  Similarity=0.191  Sum_probs=195.6

Q ss_pred             CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcc----
Q psy4577           8 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVV----   83 (384)
Q Consensus         8 ~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~----   83 (384)
                      +.++.+++.|.+.+||.++.              ..++..+.||.+.|+++.|++.+. +++++|.|++..||...    
T Consensus       160 qpi~gtASADhTA~iWs~Es--------------g~CL~~Y~GH~GSVNsikfh~s~~-L~lTaSGD~taHIW~~av~~~  224 (481)
T KOG0300|consen  160 QPICGTASADHTARIWSLES--------------GACLATYTGHTGSVNSIKFHNSGL-LLLTASGDETAHIWKAAVNWE  224 (481)
T ss_pred             CcceeecccccceeEEeecc--------------ccceeeecccccceeeEEeccccc-eEEEccCCcchHHHHHhhcCc
Confidence            34899999999999999987              478888999999999999999999 88999999999999832    


Q ss_pred             --cCC---CccchhheeeeeeeEEEe----ccCCcc---cccceeeeeeccCeeEEEEecCceeee----cceeeeeccc
Q psy4577          84 --CVE---PFDDAVEERVINEEYKIW----KKNTPF---LYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKN  147 (384)
Q Consensus        84 --~~~---~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~  147 (384)
                        ...   ......+....++...--    +..++.   -...+.+|  ...|.++.|...|+.++    |.+..+||+.
T Consensus       225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH--~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE  302 (481)
T KOG0300|consen  225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH--RAVVSACDWLAGGQQMVTASWDRTANLWDVE  302 (481)
T ss_pred             CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc--ccceEehhhhcCcceeeeeeccccceeeeec
Confidence              110   000000000000000000    001111   11244556  77888999999998887    9999999999


Q ss_pred             cccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCC
Q psy4577         148 TPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGG  227 (384)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~  227 (384)
                      ++.....+.+|..+..-                                       ++-.+....+....-|...++|+.
T Consensus       303 tge~v~~LtGHd~ELtH---------------------------------------cstHptQrLVvTsSrDtTFRLWDF  343 (481)
T KOG0300|consen  303 TGEVVNILTGHDSELTH---------------------------------------CSTHPTQRLVVTSSRDTTFRLWDF  343 (481)
T ss_pred             cCceeccccCcchhccc---------------------------------------cccCCcceEEEEeccCceeEeccc
Confidence            98888877777654210                                       001111111122222333333321


Q ss_pred             ccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC
Q psy4577         228 FGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP  307 (384)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~  307 (384)
                      .   ..-..+..+.+|...|+++.|.-+.  .+++|++|.+|+|||++         +...|+.+++ -..+++.++.+.
T Consensus       344 R---eaI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLr---------NMRsplATIR-tdS~~NRvavs~  408 (481)
T KOG0300|consen  344 R---EAIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLR---------NMRSPLATIR-TDSPANRVAVSK  408 (481)
T ss_pred             h---hhcceeeeecccccceeEEEEecCC--ceeecCCCceEEEeeec---------cccCcceeee-cCCccceeEeec
Confidence            1   1122355678999999999999876  58999999999999996         4445666665 456899999998


Q ss_pred             CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc-ccccccccccceeeEEE
Q psy4577         308 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK-ADPVCTLEKAKKKKEVV  378 (384)
Q Consensus       308 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~-~~~~c~~~~~~~~~~~~  378 (384)
                      .+ ..||---.+..|++||++..+.- ..  |-..-++|..-|+|++|..+.+. ..-.|-.+.-..++.|.
T Consensus       409 g~-~iIAiPhDNRqvRlfDlnG~Rla-Rl--PrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  409 GH-PIIAIPHDNRQVRLFDLNGNRLA-RL--PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             CC-ceEEeccCCceEEEEecCCCccc-cC--CcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence            87 48888888899999999876410 00  11223579999999999887763 22235555555555554

>KOG0305|consensus

Probab=99.92  E-value=3.4e-23  Score=176.52  Aligned_cols=219  Identities=18%  Similarity=0.300  Sum_probs=169.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecc-cccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG-HTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~g-h~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      |.|+++|. +||+|..+|.|.|||..+              ......+.+ |...|-+++|+  +. .+.+|+.|+.|..
T Consensus       223 v~ws~~G~-~LavG~~~g~v~iwD~~~--------------~k~~~~~~~~h~~rvg~laW~--~~-~lssGsr~~~I~~  284 (484)
T KOG0305|consen  223 VKWSPDGS-HLAVGTSDGTVQIWDVKE--------------QKKTRTLRGSHASRVGSLAWN--SS-VLSSGSRDGKILN  284 (484)
T ss_pred             EEECCCCC-EEEEeecCCeEEEEehhh--------------ccccccccCCcCceeEEEecc--Cc-eEEEecCCCcEEE
Confidence            57999997 799999999999999986              344455566 99999999999  33 7789999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      +|+...+..                      . ..+.+|  ...|..+.|++++.+++    |..+.|||...       
T Consensus       285 ~dvR~~~~~----------------------~-~~~~~H--~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~-------  332 (484)
T KOG0305|consen  285 HDVRISQHV----------------------V-STLQGH--RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS-------  332 (484)
T ss_pred             EEEecchhh----------------------h-hhhhcc--cceeeeeEECCCCCeeccCCCccceEeccCCC-------
Confidence            999774221                      1 124455  66788999999999988    77777776511       


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                    ..
T Consensus       333 ------------------------------------------------------------------------------~~  334 (484)
T KOG0305|consen  333 ------------------------------------------------------------------------------PE  334 (484)
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          11


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKT--PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l  313 (384)
                      +......|.+.|.+++|+|--+.+||+|+  .|+.|++||..        .+.  .+..+. -...|.+|.|++....++
T Consensus       335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~--------~g~--~i~~vd-tgsQVcsL~Wsk~~kEi~  403 (484)
T KOG0305|consen  335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN--------TGA--RIDSVD-TGSQVCSLIWSKKYKELL  403 (484)
T ss_pred             ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC--------CCc--Eecccc-cCCceeeEEEcCCCCEEE
Confidence            13445579999999999998778999975  79999999986        333  232333 345799999999863244


Q ss_pred             EEee-CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         314 LSAS-DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       314 ~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      .+-+ .++.|.||+..+.+       .+..+.+|+.+|..+++||||..+++.
T Consensus       404 sthG~s~n~i~lw~~ps~~-------~~~~l~gH~~RVl~la~SPdg~~i~t~  449 (484)
T KOG0305|consen  404 STHGYSENQITLWKYPSMK-------LVAELLGHTSRVLYLALSPDGETIVTG  449 (484)
T ss_pred             EecCCCCCcEEEEeccccc-------eeeeecCCcceeEEEEECCCCCEEEEe
Confidence            4433 47899999999988       999999999999999999999876655

>KOG0641|consensus

Probab=99.92  E-value=2.9e-21  Score=144.08  Aligned_cols=287  Identities=15%  Similarity=0.158  Sum_probs=176.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCC-CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP-PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      |+|+|.|. +.|+|+...+.+|.-..........-.....| ..+....+.|.+.|+|.+|+|+|. +||+||.|++|++
T Consensus        38 v~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~  115 (350)
T KOG0641|consen   38 VAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKV  115 (350)
T ss_pred             EEecCCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEecCCCceEEE
Confidence            58999997 89999999999987654332221211122223 334455567899999999999999 9999999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCc----eeee-----cceeeeecccccc
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV----TRVI-----NEEYKIWKKNTPF  150 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~-----d~~v~~w~~~~~~  150 (384)
                      .-.+....                 +..+.-+  .+.-|  .+.|..++|..+.    ..++     |..+.+-|...+.
T Consensus       116 l~fn~dt~-----------------~~~g~dl--e~nmh--dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~  174 (350)
T KOG0641|consen  116 LPFNADTC-----------------NATGHDL--EFNMH--DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ  174 (350)
T ss_pred             Eecccccc-----------------cccCcce--eeeec--CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence            76654210                 1111111  11222  5567788887543    2233     4444444444433


Q ss_pred             ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577         151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS  230 (384)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  230 (384)
                      -+..+.++....-. -..|....            +..|    .....++.+.+..+..-     ...|....       
T Consensus       175 ~~~a~sghtghila-lyswn~~m------------~~sg----sqdktirfwdlrv~~~v-----~~l~~~~~-------  225 (350)
T KOG0641|consen  175 GFHALSGHTGHILA-LYSWNGAM------------FASG----SQDKTIRFWDLRVNSCV-----NTLDNDFH-------  225 (350)
T ss_pred             cceeecCCcccEEE-EEEecCcE------------EEcc----CCCceEEEEeeecccee-----eeccCccc-------
Confidence            33333333221100 01121111            1111    11233344444321100     00000000       


Q ss_pred             CCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCC
Q psy4577         231 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLN  310 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~  310 (384)
                              --.-....|.+++..|.|. +|++|-.|....+||++        -+  .+++.+..|...|.++.|+|.. 
T Consensus       226 --------~~glessavaav~vdpsgr-ll~sg~~dssc~lydir--------g~--r~iq~f~phsadir~vrfsp~a-  285 (350)
T KOG0641|consen  226 --------DGGLESSAVAAVAVDPSGR-LLASGHADSSCMLYDIR--------GG--RMIQRFHPHSADIRCVRFSPGA-  285 (350)
T ss_pred             --------CCCcccceeEEEEECCCcc-eeeeccCCCceEEEEee--------CC--ceeeeeCCCccceeEEEeCCCc-
Confidence                    0001245789999999995 99999999999999997        33  3577899999999999999997 


Q ss_pred             CeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         311 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       311 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      .|+.+|+.|..|++=|+...-...-   ++.....|+..+-.+.|+|+.-..
T Consensus       286 ~yllt~syd~~ikltdlqgdla~el---~~~vv~ehkdk~i~~rwh~~d~sf  334 (350)
T KOG0641|consen  286 HYLLTCSYDMKIKLTDLQGDLAHEL---PIMVVAEHKDKAIQCRWHPQDFSF  334 (350)
T ss_pred             eEEEEecccceEEEeecccchhhcC---ceEEEEeccCceEEEEecCcccee
Confidence            8999999999999999986531111   455556799999999999987543

>KOG0294|consensus

Probab=99.92  E-value=1.3e-22  Score=158.32  Aligned_cols=248  Identities=17%  Similarity=0.247  Sum_probs=162.8

Q ss_pred             CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCC-cEEEEEecCCeEEEEEccc
Q psy4577           6 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVSEDNIMQILSVVC   84 (384)
Q Consensus         6 ~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~-~~l~s~s~D~~i~vwd~~~   84 (384)
                      +++ ++|+||.|-+|+|||+..              ...+..+-.|.+.|+++.|.+.-. .-|++|+.||.|.+|++..
T Consensus        52 s~~-~~aSGssDetI~IYDm~k--------------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~  116 (362)
T KOG0294|consen   52 SGP-YVASGSSDETIHIYDMRK--------------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS  116 (362)
T ss_pred             cce-eEeccCCCCcEEEEeccc--------------hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence            354 899999999999999987              344556678999999999988763 1245999999999999865


Q ss_pred             CCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecccc
Q psy4577          85 VEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHAL  160 (384)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~  160 (384)
                                         |.     +...+.+|  ...|+.++.+|.++..+    |+.+++|++-.++.--...-.. 
T Consensus       117 -------------------W~-----~~~slK~H--~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-  169 (362)
T KOG0294|consen  117 -------------------WE-----LLKSLKAH--KGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-  169 (362)
T ss_pred             -------------------eE-----Eeeeeccc--ccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-
Confidence                               42     22355566  44599999999998766    9999999985544322111111 


Q ss_pred             cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEE
Q psy4577         161 EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK  240 (384)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  240 (384)
                        ....+.|.|.+.          .+++..     ++.+-|+.+...               .             +...
T Consensus       170 --~at~v~w~~~Gd----------~F~v~~-----~~~i~i~q~d~A---------------~-------------v~~~  204 (362)
T KOG0294|consen  170 --KATLVSWSPQGD----------HFVVSG-----RNKIDIYQLDNA---------------S-------------VFRE  204 (362)
T ss_pred             --cceeeEEcCCCC----------EEEEEe-----ccEEEEEecccH---------------h-------------Hhhh
Confidence              011255554432          111111     222333333200               0             0001


Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEe--CCCCCCeEEEeeC
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSW--NPSLNGYLLSASD  318 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~--s~~~~~~l~s~s~  318 (384)
                      ......+.++.|-..  ..|++|.+|+.|++||..        +  ..+...+.+|..+|-++.+  .|++ .+|+|+|.
T Consensus       205 i~~~~r~l~~~~l~~--~~L~vG~d~~~i~~~D~d--------s--~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSS  271 (362)
T KOG0294|consen  205 IENPKRILCATFLDG--SELLVGGDNEWISLKDTD--------S--DTPLTEFLAHENRVKDIASYTNPEH-EYLVTASS  271 (362)
T ss_pred             hhccccceeeeecCC--ceEEEecCCceEEEeccC--------C--CccceeeecchhheeeeEEEecCCc-eEEEEecc
Confidence            111234666666543  478999999999999975        2  4567789999999999984  4676 79999999


Q ss_pred             CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577         319 DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIE  356 (384)
Q Consensus       319 Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  356 (384)
                      ||.|+|||++..++..+  .++..+. -...++|+.-.
T Consensus       272 DG~I~vWd~~~~~k~~~--~~l~e~n-~~~RltCl~~~  306 (362)
T KOG0294|consen  272 DGFIKVWDIDMETKKRP--TLLAELN-TNVRLTCLRVK  306 (362)
T ss_pred             CceEEEEEccccccCCc--ceeEEee-cCCccceeeeh
Confidence            99999999998754322  2333332 24556666653

>KOG0267|consensus

Probab=99.92  E-value=8.7e-25  Score=187.88  Aligned_cols=217  Identities=17%  Similarity=0.265  Sum_probs=173.4

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCcc
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFD   89 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~   89 (384)
                      .+++|+.|..+-||....              +..+..+.+|..+|-||.|++... +|++|+.||+||+||++...   
T Consensus        42 ~~~~Gg~~~k~~L~~i~k--------------p~~i~S~~~hespIeSl~f~~~E~-LlaagsasgtiK~wDleeAk---  103 (825)
T KOG0267|consen   42 SLVTGGEDEKVNLWAIGK--------------PNAITSLTGHESPIESLTFDTSER-LLAAGSASGTIKVWDLEEAK---  103 (825)
T ss_pred             eeccCCCceeeccccccC--------------CchhheeeccCCcceeeecCcchh-hhcccccCCceeeeehhhhh---
Confidence            688999998888998875              344556899999999999999998 99999999999999997641   


Q ss_pred             chhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecccccccce
Q psy4577          90 DAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSL  165 (384)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~  165 (384)
                                           ...++.+|  ...+.++.|+|-+.+.+    |..+++||.+...+              
T Consensus       104 ---------------------~vrtLtgh--~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc--------------  146 (825)
T KOG0267|consen  104 ---------------------IVRTLTGH--LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC--------------  146 (825)
T ss_pred             ---------------------hhhhhhcc--ccCcceeeeccceEEeccccccccceehhhhccCc--------------
Confidence                                 12355566  55677888999887765    55566665532211              


Q ss_pred             eeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCC
Q psy4577         166 TAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEG  245 (384)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (384)
                                                                                             .+...+|..
T Consensus       147 -----------------------------------------------------------------------~~~~~s~~~  155 (825)
T KOG0267|consen  147 -----------------------------------------------------------------------SHTYKSHTR  155 (825)
T ss_pred             -----------------------------------------------------------------------eeeecCCcc
Confidence                                                                                   233345888


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      .|..+.|+|+|. ++++|++|.+++|||+.        .+.  .+..|.+|...+.++.|+|.. .++++||.|++|++|
T Consensus       156 vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~--------agk--~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~  223 (825)
T KOG0267|consen  156 VVDVLRLSPDGR-WVASGGEDNTVKIWDLT--------AGK--LSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFW  223 (825)
T ss_pred             eeEEEeecCCCc-eeeccCCcceeeeeccc--------ccc--cccccccccccccccccCchh-hhhccCCCCceeeee
Confidence            899999999995 99999999999999986        343  345889999999999999996 799999999999999


Q ss_pred             ecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccccccc
Q psy4577         326 DINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKA  371 (384)
Q Consensus       326 d~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~  371 (384)
                      |+++-.       .+.........|.+++|+|++....+.|...-+
T Consensus       224 dletfe-------~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  224 DLETFE-------VISSGKPETDGVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             ccceeE-------EeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence            999776       555555567889999999999987777665544

>KOG1539|consensus

Probab=99.91  E-value=2.4e-23  Score=181.79  Aligned_cols=326  Identities=16%  Similarity=0.181  Sum_probs=200.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEE-EecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF-IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      ++|.-||..+||+|+..|.+-+||++.              ..+.. +...|.+.|+.+.|.|..+ +++|++.|+.+++
T Consensus       250 lSFrtDG~p~las~~~~G~m~~wDLe~--------------kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~  314 (910)
T KOG1539|consen  250 LSFRTDGNPLLASGRSNGDMAFWDLEK--------------KKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKV  314 (910)
T ss_pred             EEeccCCCeeEEeccCCceEEEEEcCC--------------CeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeE
Confidence            468889999999999999999999987              23333 3448989999999999999 8899999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEe-cCceeee----cceeeeeccccccccce
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWL-PDVTRVI----NEEYKIWKKNTPFLYDL  154 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~----d~~v~~w~~~~~~~~~~  154 (384)
                      |=.+++                   + ..+.+.+...||  ..|..++.|. .+|..+.    |++++.+.+....+-..
T Consensus       315 ~vfD~~-------------------d-g~pR~LR~R~GH--s~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~  372 (910)
T KOG1539|consen  315 WVFDSG-------------------D-GVPRLLRSRGGH--SAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQE  372 (910)
T ss_pred             EEeeCC-------------------C-CcchheeeccCC--CCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHh
Confidence            977654                   1 123444566677  6677889988 5666665    77777665532211100


Q ss_pred             ee---------------cccccc-cceeeeeccCCCCCCC------------CccceeEEEEeeeccCC----CCeEEEE
Q psy4577         155 VM---------------THALEW-PSLTAQWLPDVTRPEG------------KDYSIHRLILGTHTSDE----QNHLLIA  202 (384)
Q Consensus       155 ~~---------------~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~----~~~~~i~  202 (384)
                      +.               ....+. |...+.+.......-.            ..+......+|.+.-..    ...+.+.
T Consensus       373 l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~  452 (910)
T KOG1539|consen  373 LGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINAT  452 (910)
T ss_pred             hcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceE
Confidence            00               000111 1111111111000000            00000011111111100    1123344


Q ss_pred             EeecCCCCcccccccccCcCCCCCCccCCCCceeEEE---EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q psy4577         203 SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI---KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPS  279 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~  279 (384)
                      ++.++..+....+....+.+..+..    +..+....   ...|.++|++++....++ .+++++.+|.+.+||.+....
T Consensus       453 av~vs~CGNF~~IG~S~G~Id~fNm----QSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~l  527 (910)
T KOG1539|consen  453 AVCVSFCGNFVFIGYSKGTIDRFNM----QSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKVL  527 (910)
T ss_pred             EEEEeccCceEEEeccCCeEEEEEc----ccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcce
Confidence            4444444444333222222211111    11111111   247999999999999885 899999999999999975431


Q ss_pred             CC------C-------------------------CCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecC
Q psy4577         280 KP------D-------------------------PNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN  328 (384)
Q Consensus       280 ~~------~-------------------------~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~  328 (384)
                      ..      .                         .....+....|.||.+.|++++||||| +||++++.|++|++||+.
T Consensus       528 ~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlp  606 (910)
T KOG1539|consen  528 KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLP  606 (910)
T ss_pred             eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEecc
Confidence            10      0                         001222334678999999999999999 899999999999999999


Q ss_pred             CCCCCCccccceeeeeccCCcEeEEEEecCCCccccc-------ccccccceeeEE
Q psy4577         329 ATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV-------CTLEKAKKKKEV  377 (384)
Q Consensus       329 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~-------c~~~~~~~~~~~  377 (384)
                      ++.       ++-.+. -..+.+++.|||.|..++++       |.|..+..++.+
T Consensus       607 t~~-------lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~v  654 (910)
T KOG1539|consen  607 TGT-------LIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKSV  654 (910)
T ss_pred             Ccc-------eeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchhHheec
Confidence            987       555443 46789999999999988876       555544444443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.91  E-value=1.7e-22  Score=170.23  Aligned_cols=229  Identities=24%  Similarity=0.338  Sum_probs=159.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      +.|+|+++ +|++++.|+.|++||+..              .+....+.+|...|.++.|++++. ++++++.|+.+++|
T Consensus        57 ~~~~~~~~-~l~~~~~~~~i~i~~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~  120 (289)
T cd00200          57 VAASADGT-YLASGSSDKTIRLWDLET--------------GECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVW  120 (289)
T ss_pred             EEECCCCC-EEEEEcCCCeEEEEEcCc--------------ccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEE
Confidence            36889886 799999999999999985              245556678888999999999977 77788889999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+...+             ....           +..|  ...+.+++|+|++..++    ++.+++|+.+.......+.
T Consensus       121 ~~~~~~-------------~~~~-----------~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~  174 (289)
T cd00200         121 DVETGK-------------CLTT-----------LRGH--TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT  174 (289)
T ss_pred             ECCCcE-------------EEEE-----------eccC--CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe
Confidence            997531             1111           1122  45688999999987776    8899999987554433333


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+..  +...+.+.++.                                     ..+.+...+.....|..    .....
T Consensus       175 ~~~~--~i~~~~~~~~~-------------------------------------~~l~~~~~~~~i~i~d~----~~~~~  211 (289)
T cd00200         175 GHTG--EVNSVAFSPDG-------------------------------------EKLLSSSSDGTIKLWDL----STGKC  211 (289)
T ss_pred             cCcc--ccceEEECCCc-------------------------------------CEEEEecCCCcEEEEEC----CCCce
Confidence            2211  22333343332                                     11211111222111111    01111


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ......|...+.+++|+|++ .++++++.||.|++||+.        .+  .+...+.+|...|.+++|+|++ .+|+++
T Consensus       212 ~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~--------~~--~~~~~~~~~~~~i~~~~~~~~~-~~l~~~  279 (289)
T cd00200         212 LGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLR--------TG--ECVQTLSGHTNSVTSLAWSPDG-KRLASG  279 (289)
T ss_pred             ecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcC--------Cc--eeEEEccccCCcEEEEEECCCC-CEEEEe
Confidence            22333678899999999997 588888889999999985        22  3455677899999999999998 799999


Q ss_pred             eCCCcEEEEe
Q psy4577         317 SDDHTICLWD  326 (384)
Q Consensus       317 s~Dg~i~iwd  326 (384)
                      +.||.|++|+
T Consensus       280 ~~d~~i~iw~  289 (289)
T cd00200         280 SADGTIRIWD  289 (289)
T ss_pred             cCCCeEEecC
Confidence            9999999996

>KOG0274|consensus

Probab=99.91  E-value=4.7e-23  Score=182.09  Aligned_cols=240  Identities=18%  Similarity=0.209  Sum_probs=177.7

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEE-ecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCc
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPF   88 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~   88 (384)
                      .+++++.|++|++||..+              ...+.. +.||.+.|.+++|..-+. +|++|+.|.++++||..+++. 
T Consensus       220 ~~~~~s~~~tl~~~~~~~--------------~~~i~~~l~GH~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~C-  283 (537)
T KOG0274|consen  220 FFKSGSDDSTLHLWDLNN--------------GYLILTRLVGHFGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGEC-  283 (537)
T ss_pred             eEEecCCCceeEEeeccc--------------ceEEEeeccCCCCCceeEEEecCCC-EEEEEecCCcEEeEecCCCcE-
Confidence            689999999999999886              344555 999999999999987444 889999999999999887622 


Q ss_pred             cchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceee--ecceeeeeccccccccceeeccccccccee
Q psy4577          89 DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRV--INEEYKIWKKNTPFLYDLVMTHALEWPSLT  166 (384)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~  166 (384)
                                  ..           .+.+|  .+.+.++...+.-...  .|.+|++|++.++....++.++...  +.+
T Consensus       284 ------------~~-----------~l~gh--~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~--V~~  336 (537)
T KOG0274|consen  284 ------------TH-----------SLQGH--TSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGP--VNC  336 (537)
T ss_pred             ------------EE-----------EecCC--CceEEEEEccCceEeeccCCceEEEEeccCcceEEEecccccc--EEE
Confidence                        11           33344  4556677777666555  6999999999999888776654332  122


Q ss_pred             eeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCc
Q psy4577         167 AQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGE  246 (384)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (384)
                      +..                                     .  +..+....+|..++.|..    .....+..+.+|.+.
T Consensus       337 v~~-------------------------------------~--~~~lvsgs~d~~v~VW~~----~~~~cl~sl~gH~~~  373 (537)
T KOG0274|consen  337 VQL-------------------------------------D--EPLLVSGSYDGTVKVWDP----RTGKCLKSLSGHTGR  373 (537)
T ss_pred             EEe-------------------------------------c--CCEEEEEecCceEEEEEh----hhceeeeeecCCcce
Confidence            211                                     1  122223333433333322    122236677789999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEe
Q psy4577         247 VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWD  326 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd  326 (384)
                      |.++.+.+.  ..+++|+.|++|++||++        ... +.+.++.+|..-+.++.+.  + ++|++++.|++|++||
T Consensus       374 V~sl~~~~~--~~~~Sgs~D~~IkvWdl~--------~~~-~c~~tl~~h~~~v~~l~~~--~-~~Lvs~~aD~~Ik~WD  439 (537)
T KOG0274|consen  374 VYSLIVDSE--NRLLSGSLDTTIKVWDLR--------TKR-KCIHTLQGHTSLVSSLLLR--D-NFLVSSSADGTIKLWD  439 (537)
T ss_pred             EEEEEecCc--ceEEeeeeccceEeecCC--------chh-hhhhhhcCCcccccccccc--c-ceeEeccccccEEEee
Confidence            999988775  489999999999999996        221 4677899999888776653  4 6899999999999999


Q ss_pred             cCCCCCCCccccceeeeec-cCCcEeEEEEe
Q psy4577         327 INATPKENRVIDAKTIFTG-HTAVVELELIE  356 (384)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s  356 (384)
                      ..+++       ++.++.+ |.+.|+++++.
T Consensus       440 ~~~~~-------~~~~~~~~~~~~v~~l~~~  463 (537)
T KOG0274|consen  440 AEEGE-------CLRTLEGRHVGGVSALALG  463 (537)
T ss_pred             cccCc-------eeeeeccCCcccEEEeecC
Confidence            99999       9999998 77899999886

>KOG0321|consensus

Probab=99.91  E-value=5.1e-23  Score=174.74  Aligned_cols=262  Identities=16%  Similarity=0.274  Sum_probs=175.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEE--EecccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF--IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~   78 (384)
                      ++|-| ++.+|++++.|.++++||+++.              .+..  .+.||.+.|.+++|+|..+.++++|+.||.|.
T Consensus       106 l~wap-ge~~lVsasGDsT~r~Wdvk~s--------------~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il  170 (720)
T KOG0321|consen  106 LKWAP-GESLLVSASGDSTIRPWDVKTS--------------RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL  170 (720)
T ss_pred             eccCC-CceeEEEccCCceeeeeeeccc--------------eeecceeecccccccchhhhccCCCcceeeccCCCcEE
Confidence            46788 6678999999999999999872              3333  37899999999999999998999999999999


Q ss_pred             EEEcccCCCc-----cch---------hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cc
Q psy4577          79 ILSVVCVEPF-----DDA---------VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NE  139 (384)
Q Consensus        79 vwd~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~  139 (384)
                      |||+.+...-     ...         .........+..|+.....+         ...|+.+ +..|...++     |+
T Consensus       171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti---------~ssvTvv-~fkDe~tlaSaga~D~  240 (720)
T KOG0321|consen  171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI---------FSSVTVV-LFKDESTLASAGAADS  240 (720)
T ss_pred             EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce---------eeeeEEE-EEeccceeeeccCCCc
Confidence            9999775310     000         00011112223333332221         2234444 444554444     99


Q ss_pred             eeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccccc
Q psy4577         140 EYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYD  219 (384)
Q Consensus       140 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d  219 (384)
                      .+++||++......  ......                                       +                  
T Consensus       241 ~iKVWDLRk~~~~~--r~ep~~---------------------------------------~------------------  261 (720)
T KOG0321|consen  241 TIKVWDLRKNYTAY--RQEPRG---------------------------------------S------------------  261 (720)
T ss_pred             ceEEEeeccccccc--ccCCCc---------------------------------------c------------------
Confidence            99999997653310  000000                                       0                  


Q ss_pred             CcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCc
Q psy4577         220 TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE  299 (384)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  299 (384)
                                   ..+...  ..-...+.++.....|.+++|++. |+.|+.|++..        ....|+..+.++...
T Consensus       262 -------------~~~~t~--skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s--------~s~sP~~~~sg~~~~  317 (720)
T KOG0321|consen  262 -------------DKYPTH--SKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRS--------LSISPVAEFSGKLNS  317 (720)
T ss_pred             -------------cCccCc--ccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccc--------cCcCchhhccCcccc
Confidence                         000000  001234667777888876677655 99999999984        334455566665432


Q ss_pred             e--EEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccceeeEE
Q psy4577         300 G--YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKKKEV  377 (384)
Q Consensus       300 i--~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~~~~  377 (384)
                      -  ..-..+||+ .+|++|+.|..+++|.+.+...      +...+.||...|++++|.|..-.....|+.+.-.+-+.+
T Consensus       318 sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~e~------~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  318 SFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSPEA------PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             eeeeeeecCCCC-ceEeccCCCcceeeeeecCccC------ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence            2  123458998 7999999999999999998764      777888999999999999999988888877766655544

>KOG0307|consensus

Probab=99.91  E-value=6.8e-24  Score=191.51  Aligned_cols=241  Identities=17%  Similarity=0.236  Sum_probs=183.2

Q ss_pred             CCCCCCCCc---eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeE
Q psy4577           1 VQWSPHNET---ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM   77 (384)
Q Consensus         1 v~fsp~~~~---~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i   77 (384)
                      ++|.+.+..   +||.|..||.|.+||....        ..+....++.....|++.|..|.|++.+.++||+|+.||.|
T Consensus        70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI  141 (1049)
T KOG0307|consen   70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEI  141 (1049)
T ss_pred             eeecccCCCccceeeccccCCceEEecchhh--------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcE
Confidence            356666654   6999999999999998752        11223466777788999999999999999899999999999


Q ss_pred             EEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccc
Q psy4577          78 QILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~  152 (384)
                      .|||+...+                     .++-   ..+....+.|.+++|+..-.+++     +|...+||++.....
T Consensus       142 ~iWDlnn~~---------------------tP~~---~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi  197 (1049)
T KOG0307|consen  142 LIWDLNKPE---------------------TPFT---PGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI  197 (1049)
T ss_pred             EEeccCCcC---------------------CCCC---CCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc
Confidence            999997631                     1111   00222356788999998887766     677888887553220


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                                                                       ..++                           
T Consensus       198 -------------------------------------------------i~ls---------------------------  201 (1049)
T KOG0307|consen  198 -------------------------------------------------IKLS---------------------------  201 (1049)
T ss_pred             -------------------------------------------------cccc---------------------------
Confidence                                                             0000                           


Q ss_pred             CceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCC---cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSS---DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL  309 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~  309 (384)
                             ...-...+..++|+|++...++++++|.   .|.+||+|         ....|+.++.+|...|.++.|++.+
T Consensus       202 -------~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR---------~assP~k~~~~H~~GilslsWc~~D  265 (1049)
T KOG0307|consen  202 -------DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR---------FASSPLKILEGHQRGILSLSWCPQD  265 (1049)
T ss_pred             -------cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc---------ccCCchhhhcccccceeeeccCCCC
Confidence                   0001134788999999887888887664   59999996         3445778899999999999999987


Q ss_pred             CCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccc
Q psy4577         310 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAK  372 (384)
Q Consensus       310 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~  372 (384)
                      +.+|+|++.|++|..|+.++++       .+..+.....++.++.|+|..+.+.++.+.+.+.
T Consensus       266 ~~lllSsgkD~~ii~wN~~tgE-------vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI  321 (1049)
T KOG0307|consen  266 PRLLLSSGKDNRIICWNPNTGE-------VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKI  321 (1049)
T ss_pred             chhhhcccCCCCeeEecCCCce-------EeeecCCCCcceeeeeecCCCcchhhhheeccce
Confidence            7899999999999999999998       8888888888999999999999777665544443

>KOG0281|consensus

Probab=99.91  E-value=9.6e-24  Score=166.76  Aligned_cols=229  Identities=17%  Similarity=0.247  Sum_probs=170.5

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCc
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPF   88 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~   88 (384)
                      .+|++||.|.+|+|||+++              .+.+.++-+|...|..+.|+..   +++|+|.|.++++||+....  
T Consensus       248 rviisGSSDsTvrvWDv~t--------------ge~l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps--  308 (499)
T KOG0281|consen  248 RVIVSGSSDSTVRVWDVNT--------------GEPLNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPT--  308 (499)
T ss_pred             eEEEecCCCceEEEEeccC--------------CchhhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCch--
Confidence            3799999999999999998              4778888999999999999864   77899999999999997641  


Q ss_pred             cchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecccccccc
Q psy4577          89 DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPS  164 (384)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~  164 (384)
                                         ...+...+.||  ...|..+.|+..  +++    |.++++|++.+..+..++.+|.....|
T Consensus       309 -------------------~it~rrVLvGH--rAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~gHkRGIAC  365 (499)
T KOG0281|consen  309 -------------------DITLRRVLVGH--RAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC  365 (499)
T ss_pred             -------------------HHHHHHHHhhh--hhheeeeccccc--eEEEecCCceEEEEeccceeeehhhhccccccee
Confidence                               12244577788  788999999987  555    999999999999999888888765433


Q ss_pred             eeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecC
Q psy4577         165 LTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHE  244 (384)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  244 (384)
                      +..              .-.-++.|+    ..+.+.++.+.                           ....+..+.+|+
T Consensus       366 lQY--------------r~rlvVSGS----SDntIRlwdi~---------------------------~G~cLRvLeGHE  400 (499)
T KOG0281|consen  366 LQY--------------RDRLVVSGS----SDNTIRLWDIE---------------------------CGACLRVLEGHE  400 (499)
T ss_pred             hhc--------------cCeEEEecC----CCceEEEEecc---------------------------ccHHHHHHhchH
Confidence            211              001111111    13444444433                           112255667999


Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      .-|.++.|..   ..+++|+.||+|+|||+........+. ....+.++..|.+.|..+.|..   ..+++++.|.+|.|
T Consensus       401 eLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~-~~~Cl~~lv~hsgRVFrLQFD~---fqIvsssHddtILi  473 (499)
T KOG0281|consen  401 ELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPA-STLCLRTLVEHSGRVFRLQFDE---FQIISSSHDDTILI  473 (499)
T ss_pred             HhhhheeecC---ceeeeccccceEEEEecccccCCcccc-cchHHHhhhhccceeEEEeecc---eEEEeccCCCeEEE
Confidence            9999999964   379999999999999997432211111 1223557778999999999953   57999999999999


Q ss_pred             EecCCCC
Q psy4577         325 WDINATP  331 (384)
Q Consensus       325 wd~~~~~  331 (384)
                      ||+..+.
T Consensus       474 WdFl~~~  480 (499)
T KOG0281|consen  474 WDFLNGP  480 (499)
T ss_pred             EEcCCCC
Confidence            9998875

>KOG2919|consensus

Probab=99.91  E-value=2.1e-22  Score=157.67  Aligned_cols=285  Identities=14%  Similarity=0.254  Sum_probs=180.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEc-------cCCCcEEEEEec
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-------PNEPWVICSVSE   73 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~-------~~~~~~l~s~s~   73 (384)
                      +.|||||. .|.+-+.|..+.+|++....-....+.....+...... .-....|.+-+|.       |+.. ++|+.+.
T Consensus        55 ckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r-~~eg~tvydy~wYs~M~s~qP~t~-l~a~ssr  131 (406)
T KOG2919|consen   55 CKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYR-YQEGETVYDYCWYSRMKSDQPSTN-LFAVSSR  131 (406)
T ss_pred             ceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCccccccceeEE-eccCCEEEEEEeeeccccCCCccc-eeeeccc
Confidence            47999998 78888899999999987533222211111112122111 1223578999987       4444 8889999


Q ss_pred             CCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccc-
Q psy4577          74 DNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTP-  149 (384)
Q Consensus        74 D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~-  149 (384)
                      |.-|++||.-+++.-..          ++-++....    .       ..-.+++|+|||..++   ...|+++|...+ 
T Consensus       132 ~~PIh~wdaftG~lraS----------y~~ydh~de----~-------taAhsL~Fs~DGeqlfaGykrcirvFdt~RpG  190 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRAS----------YRAYDHQDE----Y-------TAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPG  190 (406)
T ss_pred             cCceeeeeccccccccc----------hhhhhhHHh----h-------hhheeEEecCCCCeEeecccceEEEeeccCCC
Confidence            99999999988632110          011111111    1       1234899999999988   778888887332 


Q ss_pred             cccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCc-ccccccccCcCCCCCCc
Q psy4577         150 FLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDA-QFDASNYDTDKGDFGGF  228 (384)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~  228 (384)
                      +-.....+....                                .......|..++++|-+. .+.+..|-...+++   
T Consensus       191 r~c~vy~t~~~~--------------------------------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy---  235 (406)
T KOG2919|consen  191 RDCPVYTTVTKG--------------------------------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIY---  235 (406)
T ss_pred             CCCcchhhhhcc--------------------------------cccccceeeeeeccCCCCcceeeecccceeeeE---
Confidence            211111110000                                001112344455544443 33333444433332   


Q ss_pred             cCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCCCccceeeecCCCC-ceEEEEe-
Q psy4577         229 GSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK-EGYGLSW-  305 (384)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~-  305 (384)
                       ...+.-++..+.+|.+.|+.++|.++|. .|.+|+ .|-.|..||+|         ....++..+.+|.+ .-..|-| 
T Consensus       236 -~~~~~~pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR---------~~~~pv~~L~rhv~~TNQRI~FD  304 (406)
T KOG2919|consen  236 -NDDGRRPLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIR---------YSRDPVYALERHVGDTNQRILFD  304 (406)
T ss_pred             -ecCCCCceeeecccCCCeeeEEeccCcC-eecccccCCCeEEEEeeh---------hccchhhhhhhhccCccceEEEe
Confidence             1123334666779999999999999996 555554 58899999996         34457788888876 4445555 


Q ss_pred             -CCCCCCeEEEeeCCCcEEEEecCC-CCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         306 -NPSLNGYLLSASDDHTICLWDINA-TPKENRVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       306 -s~~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                       .|++ ++|++|+.||.|++||++. +.       .+..+..|+.-|+.++++|.=+.++
T Consensus       305 ld~~~-~~LasG~tdG~V~vwdlk~~gn-------~~sv~~~~sd~vNgvslnP~mpila  356 (406)
T KOG2919|consen  305 LDPKG-EILASGDTDGSVRVWDLKDLGN-------EVSVTGNYSDTVNGVSLNPIMPILA  356 (406)
T ss_pred             cCCCC-ceeeccCCCccEEEEecCCCCC-------cccccccccccccceecCcccceee
Confidence             5788 7999999999999999998 44       6777778999999999999855433

>KOG1273|consensus

Probab=99.91  E-value=7e-23  Score=159.81  Aligned_cols=269  Identities=14%  Similarity=0.217  Sum_probs=164.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++||+.|. +||+|+.||+|.|||+.+              ..+..++.+|..+|++++||++|+ +|+|+|.|..|++|
T Consensus        29 ~~Fs~~G~-~lAvGc~nG~vvI~D~~T--------------~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lw   92 (405)
T KOG1273|consen   29 CQFSRWGD-YLAVGCANGRVVIYDFDT--------------FRIARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLW   92 (405)
T ss_pred             EEeccCcc-eeeeeccCCcEEEEEccc--------------cchhhhhhccccceeEEEecCCCC-EeeeecCCceeEEE
Confidence            57999997 899999999999999987              456677889999999999999999 77899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~  155 (384)
                      |+..+...                           ..-.+..+|+.++|+|-....+     +..-.+-+...+.. .. 
T Consensus        93 Dl~~gs~l---------------------------~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~-  143 (405)
T KOG1273|consen   93 DLLKGSPL---------------------------KRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SV-  143 (405)
T ss_pred             eccCCCce---------------------------eEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-ee-
Confidence            99876221                           1112366788899998764322     11111111111000 00 


Q ss_pred             ecccccccceeeeeccCCCCCCCCc-----cceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKD-----YSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS  230 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  230 (384)
                                 +...+++.......     ..-..+..|+..    ..+.+....                .        
T Consensus       144 -----------Lp~d~d~dln~sas~~~fdr~g~yIitGtsK----Gkllv~~a~----------------t--------  184 (405)
T KOG1273|consen  144 -----------LPKDDDGDLNSSASHGVFDRRGKYIITGTSK----GKLLVYDAE----------------T--------  184 (405)
T ss_pred             -----------ccCCCccccccccccccccCCCCEEEEecCc----ceEEEEecc----------------h--------
Confidence                       00000110000000     000111222111    011111110                0        


Q ss_pred             CCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC--CCCceEEEEeCCC
Q psy4577         231 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG--HQKEGYGLSWNPS  308 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~s~~  308 (384)
                        -.......+.....|..+.++-.|. +|+.-+.|..||.|+++.-... ...+..++.+.+..  ....=.+++||.+
T Consensus       185 --~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~-~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d  260 (405)
T KOG1273|consen  185 --LECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDE-GRDGEVEPEHKLQDVVNKLQWKKCCFSGD  260 (405)
T ss_pred             --heeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhccc-CccCCcChhHHHHHHHhhhhhhheeecCC
Confidence              0000111111135688899999885 8899999999999998732111 00233333333322  1123357889999


Q ss_pred             CCCeEEEee-CCCcEEEEecCCCCCCCccccceeeeeccC-CcEeEEEEecCCCccccc
Q psy4577         309 LNGYLLSAS-DDHTICLWDINATPKENRVIDAKTIFTGHT-AVVELELIERLTKKADPV  365 (384)
Q Consensus       309 ~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~~~~  365 (384)
                      |+ |++.++ .-..++||.-..+.       .++.|.|.. ....++.|+|-.+.+++.
T Consensus       261 ge-Yv~a~s~~aHaLYIWE~~~Gs-------LVKILhG~kgE~l~DV~whp~rp~i~si  311 (405)
T KOG1273|consen  261 GE-YVCAGSARAHALYIWEKSIGS-------LVKILHGTKGEELLDVNWHPVRPIIASI  311 (405)
T ss_pred             cc-EEEeccccceeEEEEecCCcc-------eeeeecCCchhheeecccccceeeeeec
Confidence            96 555554 56889999999999       999999877 568899999999988776

>KOG0646|consensus

Probab=99.91  E-value=6.1e-23  Score=168.06  Aligned_cols=231  Identities=18%  Similarity=0.212  Sum_probs=164.0

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      +-+|.|. +|+.|+..|.|++|.+++              ..++.++.+|-..|+||.|+-||. .|+|||.||.|.+|+
T Consensus        88 ~s~n~G~-~l~ag~i~g~lYlWelss--------------G~LL~v~~aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~  151 (476)
T KOG0646|consen   88 ASSNLGY-FLLAGTISGNLYLWELSS--------------GILLNVLSAHYQSITCLKFSDDGS-HIITGSKDGAVLVWL  151 (476)
T ss_pred             ecCCCce-EEEeecccCcEEEEEecc--------------ccHHHHHHhhccceeEEEEeCCCc-EEEecCCCccEEEEE
Confidence            3467775 777777899999999997              588889999999999999999999 778999999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCc--eeee----cceeeeecccccccccee
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV--TRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      +..--.-.               +...+.-...+..|  .-+|..+...+.|  .+++    |.++++||+....+    
T Consensus       152 l~~lv~a~---------------~~~~~~p~~~f~~H--tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L----  210 (476)
T KOG0646|consen  152 LTDLVSAD---------------NDHSVKPLHIFSDH--TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL----  210 (476)
T ss_pred             EEeecccc---------------cCCCccceeeeccC--cceeEEEEecCCCccceEEEecCCceEEEEEecccee----
Confidence            85420000               00011111122233  2345555444443  2333    66666666543322    


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (476)
T KOG0646|consen  211 --------------------------------------------------------------------------------  210 (476)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC------CCCCCccceeeecCCCC--ceEEEEeCC
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP------DPNGECHPDLRLRGHQK--EGYGLSWNP  307 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~h~~--~i~~~~~s~  307 (384)
                        .........+.+++.+|.+ +.+..|+.+|.|.+.++...+...      ........+..+.||.+  +|+|++.+-
T Consensus       211 --Llti~fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~  287 (476)
T KOG0646|consen  211 --LLTITFPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST  287 (476)
T ss_pred             --eEEEecCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence              1111234568899999988 488899999999998886543110      00112234557889988  999999999


Q ss_pred             CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577         308 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK  360 (384)
Q Consensus       308 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  360 (384)
                      || .+|++|+.||.|+|||+.+.+       +++++..-.++|+.+.+.|-.+
T Consensus       288 Dg-tlLlSGd~dg~VcvWdi~S~Q-------~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  288 DG-TLLLSGDEDGKVCVWDIYSKQ-------CIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             Cc-cEEEeeCCCCCEEEEecchHH-------HHHHHhhhccccceeEeecccc
Confidence            99 799999999999999999998       9998877789999999977644

>KOG1407|consensus

Probab=99.91  E-value=5.4e-23  Score=156.29  Aligned_cols=232  Identities=16%  Similarity=0.201  Sum_probs=165.4

Q ss_pred             EEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCee
Q psy4577          46 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSL  125 (384)
Q Consensus        46 ~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  125 (384)
                      ..+.+|...|.+++|+.+|. .|++++.|+++++|+++..+..             +-         ....+|  .+.|.
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~-------------~~---------~~~~gh--~~svd   68 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFR-------------KE---------LVYRGH--TDSVD   68 (313)
T ss_pred             HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhh-------------hh---------hcccCC--Ccchh
Confidence            44578999999999999999 7799999999999999763110             00         122344  56788


Q ss_pred             EEEEecCceeee-----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEE
Q psy4577         126 TAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLL  200 (384)
Q Consensus       126 ~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (384)
                      .++|+|....++     |.++++||.+..+....+.....   ..-+.|.|++.                          
T Consensus        69 ql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e---ni~i~wsp~g~--------------------------  119 (313)
T KOG1407|consen   69 QLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE---NINITWSPDGE--------------------------  119 (313)
T ss_pred             hheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc---ceEEEEcCCCC--------------------------
Confidence            899998875544     99999999988766443332221   23345555543                          


Q ss_pred             EEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q psy4577         201 IASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK  280 (384)
Q Consensus       201 i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~  280 (384)
                                 .+.+..-|.....++.     .+..+.........++.++|+.++. +|..-...|.|.|-.+.     
T Consensus       120 -----------~~~~~~kdD~it~id~-----r~~~~~~~~~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyp-----  177 (313)
T KOG1407|consen  120 -----------YIAVGNKDDRITFIDA-----RTYKIVNEEQFKFEVNEISWNNSND-LFFLTNGLGCVEILSYP-----  177 (313)
T ss_pred             -----------EEEEecCcccEEEEEe-----cccceeehhcccceeeeeeecCCCC-EEEEecCCceEEEEecc-----
Confidence                       1111111111100000     0111222223455688899997775 55544668999998873     


Q ss_pred             CCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577         281 PDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK  360 (384)
Q Consensus       281 ~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  360 (384)
                           ..+|+..+..|.....||.|+|+| ++||+|+.|..+-+||+...-       +++.+.-+.-+|..+.||.+|+
T Consensus       178 -----sLkpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELi-------C~R~isRldwpVRTlSFS~dg~  244 (313)
T KOG1407|consen  178 -----SLKPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELI-------CERCISRLDWPVRTLSFSHDGR  244 (313)
T ss_pred             -----ccccccccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhh-------hheeeccccCceEEEEeccCcc
Confidence                 456888999999999999999999 899999999999999999887       9999999999999999999999


Q ss_pred             cccccc
Q psy4577         361 KADPVC  366 (384)
Q Consensus       361 ~~~~~c  366 (384)
                      .+++..
T Consensus       245 ~lASaS  250 (313)
T KOG1407|consen  245 MLASAS  250 (313)
T ss_pred             eeeccC
Confidence            988763

>KOG0289|consensus

Probab=99.90  E-value=7.7e-22  Score=160.28  Aligned_cols=262  Identities=16%  Similarity=0.193  Sum_probs=186.7

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCc
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPF   88 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~   88 (384)
                      ..++||+.|..+.++|...              .+++.++.||...|+++.|+|+.. .+++++.|..|+||.+....  
T Consensus       232 ~~ilTGG~d~~av~~d~~s--------------~q~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s--  294 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPS--------------NQILATLKGHTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSS--  294 (506)
T ss_pred             CcceecCCCCceEEEecch--------------hhhhhhccCcceEEEEEEeccchh-heeecCCcceEEeecccccc--
Confidence            4689999999999999876              478889999999999999999998 78899999999999986631  


Q ss_pred             cchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecccccccc
Q psy4577          89 DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPS  164 (384)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~  164 (384)
                                         .+   .....|  +.+|+.+..+|.|.+++    |+...+.+++....+........+   
T Consensus       295 -------------------~~---~~~~~h--~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~---  347 (506)
T KOG0289|consen  295 -------------------EP---TSSRPH--EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD---  347 (506)
T ss_pred             -------------------Cc---cccccc--cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc---
Confidence                               11   122233  78899999999999988    777777777766655443322111   


Q ss_pred             eeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecC
Q psy4577         165 LTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHE  244 (384)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  244 (384)
                                                        +.+.+..+++++..+.....|...+.|+.    ...-....+.+|.
T Consensus       348 ----------------------------------v~~ts~~fHpDgLifgtgt~d~~vkiwdl----ks~~~~a~Fpght  389 (506)
T KOG0289|consen  348 ----------------------------------VEYTSAAFHPDGLIFGTGTPDGVVKIWDL----KSQTNVAKFPGHT  389 (506)
T ss_pred             ----------------------------------ceeEEeeEcCCceEEeccCCCceEEEEEc----CCccccccCCCCC
Confidence                                              22334444444444444444444443322    1222355667899


Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      ++|..|+|+.+| ++||++++|+.|++||+|+..        ..+...+.. ..++.++.|.+.| .+|+.++.|=+|++
T Consensus       390 ~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~--------n~kt~~l~~-~~~v~s~~fD~SG-t~L~~~g~~l~Vy~  458 (506)
T KOG0289|consen  390 GPVKAISFSENG-YWLATAADDGSVKLWDLRKLK--------NFKTIQLDE-KKEVNSLSFDQSG-TYLGIAGSDLQVYI  458 (506)
T ss_pred             CceeEEEeccCc-eEEEEEecCCeEEEEEehhhc--------ccceeeccc-cccceeEEEcCCC-CeEEeecceeEEEE
Confidence            999999999999 799999999999999998532        112222322 2379999999999 79999988766666


Q ss_pred             EecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         325 WDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       325 wd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      ++-.+     +.+..+..+..|++..+.+.|......+++..+.
T Consensus       459 ~~k~~-----k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd  497 (506)
T KOG0289|consen  459 CKKKT-----KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMD  497 (506)
T ss_pred             Eeccc-----ccceeeehhhhcccccceeeecccceEEeeccch
Confidence            65333     2344788888899999999998777666555443

>KOG1063|consensus

Probab=99.90  E-value=7.4e-22  Score=169.24  Aligned_cols=343  Identities=17%  Similarity=0.198  Sum_probs=196.8

Q ss_pred             CceEEEeeCCCeEEEeecCCcCccccc------CCCCCCC-CeeE----------EEecccccceEEEEEccCCCcEEEE
Q psy4577           8 ETILASSGTDRRLHVWDLSKIGEEQST------EDAEDGP-PELL----------FIHGGHTAKISDFSWNPNEPWVICS   70 (384)
Q Consensus         8 ~~~lat~~~d~~i~vwd~~~~~~~~~~------~~~~~~~-~~~~----------~~~~gh~~~V~~l~~~~~~~~~l~s   70 (384)
                      ..+||++|.|..||||.+.-.+.+.+.      ....+.+ ....          ..+.||.+-|+++.|+|.+. .|+|
T Consensus       206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~-~LLS  284 (764)
T KOG1063|consen  206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL-DLLS  284 (764)
T ss_pred             cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh-hhee
Confidence            358999999999999988654422211      0011111 1111          12359999999999999996 4569


Q ss_pred             EecCCeEEEEEcccCC-----------Cc-----------cchh---heeeeeeeEEEeccCC-c--ccccceeeeeecc
Q psy4577          71 VSEDNIMQILSVVCVE-----------PF-----------DDAV---EERVINEEYKIWKKNT-P--FLYDLVMTHALEW  122 (384)
Q Consensus        71 ~s~D~~i~vwd~~~~~-----------~~-----------~~~~---~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~  122 (384)
                      +|.|+++.+|......           .-           ....   -....-+..++|+... .  .....+.||  -+
T Consensus       285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH--~~  362 (764)
T KOG1063|consen  285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH--VD  362 (764)
T ss_pred             cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc--cc
Confidence            9999999999876541           00           0000   0011235678887222 1  123456677  77


Q ss_pred             CeeEEEEecCceeee----cceeeeecccccc-cccee-ecccccccceeeeecc-CCCCCCCCccceeEEEEeeecc--
Q psy4577         123 PSLTAQWLPDVTRVI----NEEYKIWKKNTPF-LYDLV-MTHALEWPSLTAQWLP-DVTRPEGKDYSIHRLILGTHTS--  193 (384)
Q Consensus       123 ~v~~~~~~~~~~~~~----d~~v~~w~~~~~~-~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--  193 (384)
                      .|..+.|+|.|.+++    |.+-|++-..+.. .+.-+ ...-......++.+.+ +.....+.+..+.+..-....-  
T Consensus       363 ~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~  442 (764)
T KOG1063|consen  363 GVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVK  442 (764)
T ss_pred             cceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHH
Confidence            899999999999887    7777775443111 01111 0000001112233333 2222222222222211111000  


Q ss_pred             --------------CCCCeEEEEEeecCCCCcccccccccCcCCCC-----------CCc----cCC-------CCceeE
Q psy4577         194 --------------DEQNHLLIASVQLPNEDAQFDASNYDTDKGDF-----------GGF----GSV-------SGKIEI  237 (384)
Q Consensus       194 --------------~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~----~~~-------~~~~~~  237 (384)
                                    .......+..+.++......-    +.+.+..           ...    ...       .-.+..
T Consensus       443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~----e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv  518 (764)
T KOG1063|consen  443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG----ETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV  518 (764)
T ss_pred             HHHHHhCccccCchhcccccccccccccCCCCccc----ccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence                          000111111122211111000    0000000           000    000       011234


Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCe
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPS-----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGY  312 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~  312 (384)
                      +++.+|...|.+++.+|++ +++||++..     ..|++|+.          ........+.+|+-.|+.++||||| ++
T Consensus       519 ~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t----------~~W~~~~~L~~HsLTVT~l~FSpdg-~~  586 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNT----------ANWLQVQELEGHSLTVTRLAFSPDG-RY  586 (764)
T ss_pred             HHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEec----------cchhhhheecccceEEEEEEECCCC-cE
Confidence            5568999999999999999 599998754     45999996          3444566899999999999999999 89


Q ss_pred             EEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccce
Q psy4577         313 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKK  373 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~  373 (384)
                      |++.|.|.++.+|........+-   .....+.|+.-|+++.|+|++.. .++|+-+++.+
T Consensus       587 LLsvsRDRt~sl~~~~~~~~~e~---~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~Vk  643 (764)
T KOG1063|consen  587 LLSVSRDRTVSLYEVQEDIKDEF---RFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVK  643 (764)
T ss_pred             EEEeecCceEEeeeeecccchhh---hhccccccceEEEEcccCcccce-eEEecCCceEE
Confidence            99999999999999865542222   23346789999999999999998 45555444444

>KOG0296|consensus

Probab=99.90  E-value=3.3e-22  Score=158.90  Aligned_cols=241  Identities=15%  Similarity=0.208  Sum_probs=150.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|||.+. +|+.|+.||.+-+|.+..              ....+.+.||+.++++=.|.|+|+ .++++..||+|++|
T Consensus       154 l~WHp~a~-illAG~~DGsvWmw~ip~--------------~~~~kv~~Gh~~~ct~G~f~pdGK-r~~tgy~dgti~~W  217 (399)
T KOG0296|consen  154 LKWHPRAH-ILLAGSTDGSVWMWQIPS--------------QALCKVMSGHNSPCTCGEFIPDGK-RILTGYDDGTIIVW  217 (399)
T ss_pred             EEeccccc-EEEeecCCCcEEEEECCC--------------cceeeEecCCCCCcccccccCCCc-eEEEEecCceEEEE
Confidence            47999886 899999999999999975              256788899999999999999999 77899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      ++.+++.+...             ....            .....++.++..+..++    ++.+.+-+....++.....
T Consensus       218 n~ktg~p~~~~-------------~~~e------------~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n  272 (399)
T KOG0296|consen  218 NPKTGQPLHKI-------------TQAE------------GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN  272 (399)
T ss_pred             ecCCCceeEEe-------------cccc------------cCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence            99887432111             1000            01122344444443333    2222222221111111111


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .   ..|.+....       +...                  -.+-.+.++..-........|.+..+|+.     ....
T Consensus       273 ~---~~~~l~~~~-------e~~~------------------esve~~~~ss~lpL~A~G~vdG~i~iyD~-----a~~~  319 (399)
T KOG0296|consen  273 G---TVPELKPSQ-------EELD------------------ESVESIPSSSKLPLAACGSVDGTIAIYDL-----AAST  319 (399)
T ss_pred             C---CCccccccc-------hhhh------------------hhhhhcccccccchhhcccccceEEEEec-----ccch
Confidence            0   000000000       0000                  00001111111111222233333333322     1122


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      +.....|...|..+.|-+ .+ +|++++.||+||.||.|        +++.  +..+.||..+|.+++.+|+. ++++|+
T Consensus       320 ~R~~c~he~~V~~l~w~~-t~-~l~t~c~~g~v~~wDaR--------tG~l--~~~y~GH~~~Il~f~ls~~~-~~vvT~  386 (399)
T KOG0296|consen  320 LRHICEHEDGVTKLKWLN-TD-YLLTACANGKVRQWDAR--------TGQL--KFTYTGHQMGILDFALSPQK-RLVVTV  386 (399)
T ss_pred             hheeccCCCceEEEEEcC-cc-hheeeccCceEEeeecc--------ccce--EEEEecCchheeEEEEcCCC-cEEEEe
Confidence            344557899999999999 43 78888999999999998        6654  56899999999999999998 899999


Q ss_pred             eCCCcEEEEecC
Q psy4577         317 SDDHTICLWDIN  328 (384)
Q Consensus       317 s~Dg~i~iwd~~  328 (384)
                      |.|++.+|+++.
T Consensus       387 s~D~~a~VF~v~  398 (399)
T KOG0296|consen  387 SDDNTALVFEVP  398 (399)
T ss_pred             cCCCeEEEEecC
Confidence            999999999874

>KOG1007|consensus

Probab=99.90  E-value=4.1e-22  Score=153.72  Aligned_cols=248  Identities=17%  Similarity=0.231  Sum_probs=172.3

Q ss_pred             CCCCCCCceEEEeeCC-------CeEEEeecCCcCcccccCCCCCCCCeeEEEec-ccccceEEEEEccCCCcEEEEEec
Q psy4577           2 QWSPHNETILASSGTD-------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWVICSVSE   73 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~~l~s~s~   73 (384)
                      +=+|..+.+|+|+-.|       ..+.||.+..+....     ...+.+++..+. .|.+.|.|+.|.|++. .+++- .
T Consensus        70 as~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S-----~~~tlE~v~~Ldteavg~i~cvew~Pns~-klasm-~  142 (370)
T KOG1007|consen   70 ASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS-----NSSTLECVASLDTEAVGKINCVEWEPNSD-KLASM-D  142 (370)
T ss_pred             hcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc-----ccchhhHhhcCCHHHhCceeeEEEcCCCC-eeEEe-c
Confidence            4478888889988553       247799987643221     111233444444 5667999999999998 55453 4


Q ss_pred             CCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec--Cceeee---cceeeeecccc
Q psy4577          74 DNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP--DVTRVI---NEEYKIWKKNT  148 (384)
Q Consensus        74 D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~---d~~v~~w~~~~  148 (384)
                      |..|.+|++..+..+...         +..     +    .-.+  ......+-+|+|  +|+.++   +++++.||.++
T Consensus       143 dn~i~l~~l~ess~~vae---------v~s-----s----~s~e--~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT  202 (370)
T KOG1007|consen  143 DNNIVLWSLDESSKIVAE---------VLS-----S----ESAE--MRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRT  202 (370)
T ss_pred             cCceEEEEcccCcchhee---------ecc-----c----cccc--ccceecccccCCCCccceEEEeCCCcEEEEEccc
Confidence            899999999876331100         000     0    0000  133456788988  456665   88888888765


Q ss_pred             ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCc
Q psy4577         149 PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGF  228 (384)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~  228 (384)
                      ...+..                                                                          
T Consensus       203 ~~~~~s--------------------------------------------------------------------------  208 (370)
T KOG1007|consen  203 MKKNNS--------------------------------------------------------------------------  208 (370)
T ss_pred             hhhhcc--------------------------------------------------------------------------
Confidence            333110                                                                          


Q ss_pred             cCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCC
Q psy4577         229 GSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPS  308 (384)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~  308 (384)
                                ...+|...|..+.|+|+.+.+|++|++||.|||||.|         ....|+.++.+|..+|.++.|+|.
T Consensus       209 ----------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R---------~tk~pv~el~~HsHWvW~VRfn~~  269 (370)
T KOG1007|consen  209 ----------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR---------KTKFPVQELPGHSHWVWAVRFNPE  269 (370)
T ss_pred             ----------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc---------CCCccccccCCCceEEEEEEecCc
Confidence                      1125777799999999999999999999999999997         344588899999999999999997


Q ss_pred             CCCeEEEeeCCCcEEEEecCCCCC--------------------CCc-cc-cceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         309 LNGYLLSASDDHTICLWDINATPK--------------------ENR-VI-DAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       309 ~~~~l~s~s~Dg~i~iwd~~~~~~--------------------~~~-~~-~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      ..++|.|||.|..|.+|...+-..                    ..+ .. ..+.++..|...|++++||...+-+.+.-
T Consensus       270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL  349 (370)
T KOG1007|consen  270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL  349 (370)
T ss_pred             cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence            668999999999999997654320                    001 01 13556778999999999999999877765


Q ss_pred             ccc
Q psy4577         367 TLE  369 (384)
Q Consensus       367 ~~~  369 (384)
                      +.+
T Consensus       350 SYD  352 (370)
T KOG1007|consen  350 SYD  352 (370)
T ss_pred             ccC
Confidence            433

>KOG0302|consensus

Probab=99.89  E-value=6.4e-22  Score=157.99  Aligned_cols=112  Identities=19%  Similarity=0.300  Sum_probs=96.9

Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      .+|+..|..++|||....+||+||-||+|+|||+|        .+...+-.....|.+.|+.|.|+..-+ +||+|+.||
T Consensus       254 ~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiR--------s~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdG  324 (440)
T KOG0302|consen  254 TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIR--------SGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDG  324 (440)
T ss_pred             cccccchhhhccCCccCceEEeeecCceEEEEEec--------CCCccceeEeeccCCceeeEEccCCcc-eeeecCCCc
Confidence            46999999999999988899999999999999998        454445556689999999999999974 999999999


Q ss_pred             cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         321 TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      +++|||++.-+..    .++.+++.|..+|+++.|||......++
T Consensus       325 t~~iwDLR~~~~~----~pVA~fk~Hk~pItsieW~p~e~s~iaa  365 (440)
T KOG0302|consen  325 TLSIWDLRQFKSG----QPVATFKYHKAPITSIEWHPHEDSVIAA  365 (440)
T ss_pred             eEEEEEhhhccCC----CcceeEEeccCCeeEEEeccccCceEEe
Confidence            9999999875421    3899999999999999999988755544

>KOG0275|consensus

Probab=99.89  E-value=5.1e-23  Score=161.34  Aligned_cols=196  Identities=16%  Similarity=0.229  Sum_probs=156.0

Q ss_pred             ccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEE
Q psy4577          50 GHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQW  129 (384)
Q Consensus        50 gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  129 (384)
                      |.++.+-|..|+|||+ +|++||.||.|-+|+..+++.-.+-.           +.....++     -  ++.+|.|+.|
T Consensus       211 g~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLk-----------YQAqd~fM-----M--md~aVlci~F  271 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLK-----------YQAQDNFM-----M--MDDAVLCISF  271 (508)
T ss_pred             ccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhh-----------hhhhccee-----e--cccceEEEee
Confidence            5566788999999999 77899999999999998874322111           11112211     2  2778999999


Q ss_pred             ecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEee
Q psy4577         130 LPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQ  205 (384)
Q Consensus       130 ~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  205 (384)
                      +.|...++    ||.+++|.+.++.+..-                                                   
T Consensus       272 SRDsEMlAsGsqDGkIKvWri~tG~ClRr---------------------------------------------------  300 (508)
T KOG0275|consen  272 SRDSEMLASGSQDGKIKVWRIETGQCLRR---------------------------------------------------  300 (508)
T ss_pred             cccHHHhhccCcCCcEEEEEEecchHHHH---------------------------------------------------
Confidence            99998887    99999998766544210                                                   


Q ss_pred             cCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCC
Q psy4577         206 LPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNG  285 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  285 (384)
                                                       ...+|...|+++.|+.++. .+++++.|.++||--++        ++
T Consensus       301 ---------------------------------FdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlK--------SG  338 (508)
T KOG0275|consen  301 ---------------------------------FDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLK--------SG  338 (508)
T ss_pred             ---------------------------------hhhhhccCeeEEEEccCcc-hhhcccccceEEEeccc--------cc
Confidence                                             0126888999999999996 88899999999999886        55


Q ss_pred             CccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec--cCCcEeEEEEecCCCccc
Q psy4577         286 ECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG--HTAVVELELIERLTKKAD  363 (384)
Q Consensus       286 ~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~  363 (384)
                      .  .+..++||...|+.+.|.+|| ..++|+|.||+|++|+.++..       ++.+++.  ..-+|+.+-.-|-.+.-.
T Consensus       339 K--~LKEfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~Ktte-------C~~Tfk~~~~d~~vnsv~~~PKnpeh~  408 (508)
T KOG0275|consen  339 K--CLKEFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTE-------CLSTFKPLGTDYPVNSVILLPKNPEHF  408 (508)
T ss_pred             h--hHHHhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchh-------hhhhccCCCCcccceeEEEcCCCCceE
Confidence            4  456899999999999999999 799999999999999999998       8888874  455799999889888777


Q ss_pred             cccc
Q psy4577         364 PVCT  367 (384)
Q Consensus       364 ~~c~  367 (384)
                      -+|.
T Consensus       409 iVCN  412 (508)
T KOG0275|consen  409 IVCN  412 (508)
T ss_pred             EEEc
Confidence            7774

>KOG1408|consensus

Probab=99.89  E-value=4.2e-21  Score=165.48  Aligned_cols=341  Identities=16%  Similarity=0.160  Sum_probs=211.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC----------CCcEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN----------EPWVICS   70 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~----------~~~~l~s   70 (384)
                      +.|+|..+ .|.+--.|..|+|||+.....           ......+--|...|+++.--|-          -+.-+.|
T Consensus       330 ~~Fdet~~-klscVYndhSlYvWDvrD~~k-----------vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~T  397 (1080)
T KOG1408|consen  330 CQFDETTD-KLSCVYNDHSLYVWDVRDVNK-----------VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTT  397 (1080)
T ss_pred             EEecCCCc-eEEEEEcCceEEEEecccccc-----------ccceeeeeeccceeeeeccccccccCcccccCCccceeE
Confidence            35888887 577777899999999986331           1222333457888888876551          0113679


Q ss_pred             EecCCeEEEEEcccC---CCccchhhee------eeeeeEEEeccCCcccc--cceeeeeeccCeeEEEEecCceeee--
Q psy4577          71 VSEDNIMQILSVVCV---EPFDDAVEER------VINEEYKIWKKNTPFLY--DLVMTHALEWPSLTAQWLPDVTRVI--  137 (384)
Q Consensus        71 ~s~D~~i~vwd~~~~---~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~--  137 (384)
                      ||.|++||+|++...   +.+.......      ..+.+..+....+..+.  ...........+.+++.+|+|++++  
T Consensus       398 CSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsG  477 (1080)
T KOG1408|consen  398 CSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASG  477 (1080)
T ss_pred             ecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceeccc
Confidence            999999999999763   1111111000      00011111000000000  0000111234577999999999999  


Q ss_pred             --cceeeeeccccccccceeecccccccceeeeeccC---CCCCCCCccceeEEEEeeecc----CCCCeEEEEEeecCC
Q psy4577         138 --NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD---VTRPEGKDYSIHRLILGTHTS----DEQNHLLIASVQLPN  208 (384)
Q Consensus       138 --d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~  208 (384)
                        .|+++++++.......++..|+.+..|+...+-..   ......++..++.+.++..-.    -..+.-.|.++.|..
T Consensus       478 Dr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~  557 (1080)
T KOG1408|consen  478 DRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC  557 (1080)
T ss_pred             CccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee
Confidence              78999999988777777777777654444332111   113344455555444443221    112233466666544


Q ss_pred             CC--cccccccccCcCCCCCCccCCCCc-eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCC
Q psy4577         209 ED--AQFDASNYDTDKGDFGGFGSVSGK-IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNG  285 (384)
Q Consensus       209 ~~--~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  285 (384)
                      .+  .+++...-|....--...-...+. +...........+..++..|..+ ++++++.|..|||||+.        ++
T Consensus       558 ~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~--------sg  628 (1080)
T KOG1408|consen  558 NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIE--------SG  628 (1080)
T ss_pred             cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEecc--------cc
Confidence            44  334444444322100000000111 11112222346788999999996 99999999999999996        33


Q ss_pred             Cccceeeec---CCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         286 ECHPDLRLR---GHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       286 ~~~~~~~~~---~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      .  ....|+   +|.+....+...|.| .|||+...|.++.++|+-+++       ++..+.||+..|+.+.|.+|.+.+
T Consensus       629 K--q~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgE-------cvA~m~GHsE~VTG~kF~nDCkHl  698 (1080)
T KOG1408|consen  629 K--QVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGE-------CVAQMTGHSEAVTGVKFLNDCKHL  698 (1080)
T ss_pred             c--eeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccch-------hhhhhcCcchheeeeeecccchhh
Confidence            3  334554   466778899999999 899999999999999999999       999999999999999999999998


Q ss_pred             ccc----ccccccc
Q psy4577         363 DPV----CTLEKAK  372 (384)
Q Consensus       363 ~~~----c~~~~~~  372 (384)
                      .++    |...|.-
T Consensus       699 ISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  699 ISVSGDGCIFVWKL  712 (1080)
T ss_pred             eeecCCceEEEEEC
Confidence            887    6665543

>KOG0283|consensus

Probab=99.88  E-value=3.8e-21  Score=168.71  Aligned_cols=258  Identities=13%  Similarity=0.136  Sum_probs=170.9

Q ss_pred             Eec-ccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCcc---------------------chhhe-ee-------
Q psy4577          47 IHG-GHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFD---------------------DAVEE-RV-------   96 (384)
Q Consensus        47 ~~~-gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~---------------------~~~~~-~~-------   96 (384)
                      .+. +|.+.|.++.|++||+ +||+||.|+.|+||.+...+...                     ..... ..       
T Consensus       261 e~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             ccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            344 8999999999999999 88999999999999986621000                     00000 00       


Q ss_pred             ---eeeeEEEeccCC----cccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceeeccccccccee
Q psy4577          97 ---INEEYKIWKKNT----PFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMTHALEWPSLT  166 (384)
Q Consensus        97 ---~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~~  166 (384)
                         ............    +..+..+.||  ...|..+.|+.++-.|-   |.+||+|++....+...+.          
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GH--t~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~----------  407 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGH--TADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS----------  407 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhcc--chhheecccccCCeeEeccccccEEeecCCCcceeeEEe----------
Confidence               000000001000    0011356677  67799999999886664   9999999987655543321          


Q ss_pred             eeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCc-ccccccccCcCCCCCCccCCCCceeEEEEeecCC
Q psy4577         167 AQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDA-QFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEG  245 (384)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (384)
                                                    +.-++.++.|.|.+. .++....|..+++|...    .. .+..-..-..
T Consensus       408 ------------------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~----d~-~Vv~W~Dl~~  452 (712)
T KOG0283|consen  408 ------------------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS----DK-KVVDWNDLRD  452 (712)
T ss_pred             ------------------------------cCCeeEEEEecccCCCcEeecccccceEEeecC----cC-eeEeehhhhh
Confidence                                          112567777655444 44556688888877441    11 1222223447


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec-------CCCCceEEEEeCCCCCCeEEEeeC
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR-------GHQKEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------~h~~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      -|++++|.|+|+ ..+.|+.+|.+++|+.....        ...-..+.       .|. .|+++.|.|..+..++..+.
T Consensus       453 lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk--------~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSn  522 (712)
T KOG0283|consen  453 LITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLK--------LVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSN  522 (712)
T ss_pred             hheeEEeccCCc-eEEEEEeccEEEEEEccCCe--------EEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecC
Confidence            899999999996 89999999999999986321        11111111       133 79999999876555777789


Q ss_pred             CCcEEEEecCCCCCCCccccceeeeeccCC--cEeEEEEecCCCccccccccc
Q psy4577         319 DHTICLWDINATPKENRVIDAKTIFTGHTA--VVELELIERLTKKADPVCTLE  369 (384)
Q Consensus       319 Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~~c~~~  369 (384)
                      |..|+|+|.+...       ++.+|+|+..  .-....|+.||+.+.+.|...
T Consensus       523 DSrIRI~d~~~~~-------lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  523 DSRIRIYDGRDKD-------LVHKFKGFRNTSSQISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             CCceEEEeccchh-------hhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence            9999999998887       8888987432  345678999999888776443

>KOG1445|consensus

Probab=99.88  E-value=2.7e-21  Score=164.59  Aligned_cols=119  Identities=21%  Similarity=0.231  Sum_probs=102.0

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      ..|+.+.|.|.....||.+++||.|++|.+......   .....|...+.+|...|+++.|+|-...+|++++.|-+|++
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~---e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~l  704 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP---ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIEL  704 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCC---cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeee
Confidence            347788899977779999999999999998754332   33445667889999999999999976679999999999999


Q ss_pred             EecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccce
Q psy4577         325 WDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKK  373 (384)
Q Consensus       325 wd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~  373 (384)
                      ||+++++       ....|.+|++.|.+++|||||..++++|-.....-
T Consensus       705 WDl~~~~-------~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV  746 (1012)
T KOG1445|consen  705 WDLANAK-------LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV  746 (1012)
T ss_pred             eehhhhh-------hhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence            9999998       88889999999999999999999999997765543

>KOG4378|consensus

Probab=99.88  E-value=2e-21  Score=160.61  Aligned_cols=209  Identities=14%  Similarity=0.198  Sum_probs=164.1

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCc
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPF   88 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~   88 (384)
                      .++++|+..+.|+|||++.              ..+.+.+.+|++.|+++.++-.+. +||+++..|.|.|..+.++.. 
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~--------------kl~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~-  155 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRA--------------KLIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQK-  155 (673)
T ss_pred             eeeeccCcCceeeehhhHH--------------HHHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCcc-
Confidence            4799999999999999985              355667889999999999998888 789999999999998877511 


Q ss_pred             cchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeeccccccc
Q psy4577          89 DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWP  163 (384)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~  163 (384)
                                        ..+      .+|.....|.-+.|+|..+.++     +|.|.+||+....-+           
T Consensus       156 ------------------tt~------f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~-----------  200 (673)
T KOG4378|consen  156 ------------------TTT------FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI-----------  200 (673)
T ss_pred             ------------------ccc------eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc-----------
Confidence                              111      1222233455688888887766     888899887543221           


Q ss_pred             ceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeec
Q psy4577         164 SLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINH  243 (384)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  243 (384)
                                                                                               ......|
T Consensus       201 -------------------------------------------------------------------------~~~~~~H  207 (673)
T KOG4378|consen  201 -------------------------------------------------------------------------FHASEAH  207 (673)
T ss_pred             -------------------------------------------------------------------------cchhhhc
Confidence                                                                                     1112368


Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ..+...|+|+|.++.+|++-+.|..|.+||++.+        .  ....+. ...+...++|+++| .+|+.|...|.|.
T Consensus       208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~--------~--s~~~l~-y~~Plstvaf~~~G-~~L~aG~s~G~~i  275 (673)
T KOG4378|consen  208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ--------A--STDRLT-YSHPLSTVAFSECG-TYLCAGNSKGELI  275 (673)
T ss_pred             cCCcCcceecCCccceEEEecccceEEEeecccc--------c--ccceee-ecCCcceeeecCCc-eEEEeecCCceEE
Confidence            8899999999998889999999999999999732        1  111222 34578999999999 8999999999999


Q ss_pred             EEecCCCCCCCccccceeeeeccCCcEeEEEEecCC
Q psy4577         324 LWDINATPKENRVIDAKTIFTGHTAVVELELIERLT  359 (384)
Q Consensus       324 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~  359 (384)
                      .||++..+.      |+.++.+|...|++++|-|.-
T Consensus       276 ~YD~R~~k~------Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  276 AYDMRSTKA------PVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EEecccCCC------CceEeeecccceeEEEeeecc
Confidence            999998764      999999999999999998763

>KOG4328|consensus

Probab=99.88  E-value=2e-21  Score=158.88  Aligned_cols=207  Identities=15%  Similarity=0.272  Sum_probs=137.8

Q ss_pred             CCCCCCCC-ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~-~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      ++|+|... .++|+|..-|+|-+||+.+.++          ...-+..+..|.++|.+|.|+|.....+++.|.||+||+
T Consensus       192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~----------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEK----------DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             EEecccCcceEEEEccCCCcEEEEecCCCCC----------ccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            47999976 7899999999999999963211          123345567899999999999998878889999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeecceeeeeccccccccceeeccc
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHA  159 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~  159 (384)
                      =|++....                    ..    ++..........++.|+.+...++                      
T Consensus       262 ~D~~~~i~--------------------e~----v~s~~~d~~~fs~~d~~~e~~~vl----------------------  295 (498)
T KOG4328|consen  262 QDFEGNIS--------------------EE----VLSLDTDNIWFSSLDFSAESRSVL----------------------  295 (498)
T ss_pred             eeecchhh--------------------HH----HhhcCccceeeeeccccCCCccEE----------------------
Confidence            99876410                    00    000000011112233332221111                      


Q ss_pred             ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE
Q psy4577         160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI  239 (384)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  239 (384)
                                                  ++.+.    ..+.+....                          .+.-....
T Consensus       296 ----------------------------~~~~~----G~f~~iD~R--------------------------~~~s~~~~  317 (498)
T KOG4328|consen  296 ----------------------------FGDNV----GNFNVIDLR--------------------------TDGSEYEN  317 (498)
T ss_pred             ----------------------------Eeecc----cceEEEEee--------------------------cCCccchh
Confidence                                        00000    000011111                          00111222


Q ss_pred             EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      ..-|...|++|+++|..+.+|||||.|++.+|||+|.....      ..|+.....|...|.++.|||.+ ..|+|.+.|
T Consensus       318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K------~sp~lst~~HrrsV~sAyFSPs~-gtl~TT~~D  390 (498)
T KOG4328|consen  318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK------ASPFLSTLPHRRSVNSAYFSPSG-GTLLTTCQD  390 (498)
T ss_pred             hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCC------CCcceecccccceeeeeEEcCCC-CceEeeccC
Confidence            23467789999999999899999999999999999864322      22466777899999999999998 569999999


Q ss_pred             CcEEEEecC
Q psy4577         320 HTICLWDIN  328 (384)
Q Consensus       320 g~i~iwd~~  328 (384)
                      ..|+|||..
T Consensus       391 ~~IRv~dss  399 (498)
T KOG4328|consen  391 NEIRVFDSS  399 (498)
T ss_pred             CceEEeecc
Confidence            999999985

>KOG0650|consensus

Probab=99.88  E-value=5.1e-21  Score=161.63  Aligned_cols=295  Identities=15%  Similarity=0.158  Sum_probs=190.1

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      ...|.|. +||+|+.||+|+||.+.+              ..++.+..- .+.|.||+|+|.+..-++.++.+..+.|-+
T Consensus       407 Svdp~G~-wlasGsdDGtvriWEi~T--------------gRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  407 SVDPSGE-WLASGSDDGTVRIWEIAT--------------GRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             EecCCcc-eeeecCCCCcEEEEEeec--------------ceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            4567786 799999999999999997              355555442 458999999999875555666666677776


Q ss_pred             cccCCCcc---------chhheeeeeeeEEEeccCCcc-cc-cceeeeeeccCeeEEEEecCceeee-------cceeee
Q psy4577          82 VVCVEPFD---------DAVEERVINEEYKIWKKNTPF-LY-DLVMTHALEWPSLTAQWLPDVTRVI-------NEEYKI  143 (384)
Q Consensus        82 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~~~-------d~~v~~  143 (384)
                      ...+..+.         ....+..-+..+..|...... +. .+...-.+..+|..+.|+..|.+++       ...|.|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence            65552211         111112223355677655211 00 0111122367889999999999887       456666


Q ss_pred             eccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCC
Q psy4577         144 WKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKG  223 (384)
Q Consensus       144 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~  223 (384)
                      .++.......-+....  .....+.|.|..          ..+++.+     ++++.|+.+.                  
T Consensus       551 HQLSK~~sQ~PF~ksk--G~vq~v~FHPs~----------p~lfVaT-----q~~vRiYdL~------------------  595 (733)
T KOG0650|consen  551 HQLSKRKSQSPFRKSK--GLVQRVKFHPSK----------PYLFVAT-----QRSVRIYDLS------------------  595 (733)
T ss_pred             EecccccccCchhhcC--CceeEEEecCCC----------ceEEEEe-----ccceEEEehh------------------
Confidence            6654433221111000  001222232222          1222222     2233443332                  


Q ss_pred             CCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEE
Q psy4577         224 DFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGL  303 (384)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  303 (384)
                               ....+..+......|..++.+|.|. -|+.|+.|+.+..||+         +-..+|...+.-|...++++
T Consensus       596 ---------kqelvKkL~tg~kwiS~msihp~GD-nli~gs~d~k~~WfDl---------dlsskPyk~lr~H~~avr~V  656 (733)
T KOG0650|consen  596 ---------KQELVKKLLTGSKWISSMSIHPNGD-NLILGSYDKKMCWFDL---------DLSSKPYKTLRLHEKAVRSV  656 (733)
T ss_pred             ---------HHHHHHHHhcCCeeeeeeeecCCCC-eEEEecCCCeeEEEEc---------ccCcchhHHhhhhhhhhhhh
Confidence                     0111222223445688999999997 5667899999999999         45566888999999999999


Q ss_pred             EeCCCCCCeEEEeeCCCcEEEEecCCCC--CCCccccceeeeeccCCc----EeEEEEecCCCccccccc
Q psy4577         304 SWNPSLNGYLLSASDDHTICLWDINATP--KENRVIDAKTIFTGHTAV----VELELIERLTKKADPVCT  367 (384)
Q Consensus       304 ~~s~~~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~h~~~----v~~~~~sp~~~~~~~~c~  367 (384)
                      +|++.-+ +|+||+.||++.|+.-.-.+  ...+.+.++..+++|...    |.++.|||..+.+.+...
T Consensus       657 a~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA  725 (733)
T KOG0650|consen  657 AFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA  725 (733)
T ss_pred             hhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCC
Confidence            9999985 99999999999999654332  225668899999999876    999999999998776543

>KOG0270|consensus

Probab=99.88  E-value=5.9e-21  Score=155.61  Aligned_cols=196  Identities=18%  Similarity=0.321  Sum_probs=142.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+..-+++||+||.|.+|++||+.+              .++..++..|.+.|.+++|+|..+.+|++||.|++|++.
T Consensus       249 Ls~n~~~~nVLaSgsaD~TV~lWD~~~--------------g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~  314 (463)
T KOG0270|consen  249 LSWNRNFRNVLASGSADKTVKLWDVDT--------------GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALK  314 (463)
T ss_pred             HHhccccceeEEecCCCceEEEEEcCC--------------CCcceehhhcCCceeEEEecCCCceEEEeccccceEEee
Confidence            356667778999999999999999997              355566678999999999999988789999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~  155 (384)
                      |.+....            .-+.|+.              .+.|-.++|.|.....+     ||+|+-+|++..      
T Consensus       315 D~R~~~~------------s~~~wk~--------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~------  362 (463)
T KOG0270|consen  315 DCRDPSN------------SGKEWKF--------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP------  362 (463)
T ss_pred             eccCccc------------cCceEEe--------------ccceEEEEecCCCceeEEEecCCceEEeeecCCC------
Confidence            9874200            0122322              23355566666543322     333333222111      


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                   + -
T Consensus       363 -----------------------------------------------------------------------------~-~  364 (463)
T KOG0270|consen  363 -----------------------------------------------------------------------------G-K  364 (463)
T ss_pred             -----------------------------------------------------------------------------C-C
Confidence                                                                                         1 1


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC---CceEEEEeCCCCCCe
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ---KEGYGLSWNPSLNGY  312 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~s~~~~~~  312 (384)
                      ++....+|.++|.++++++..++++++++.|+.|++|++...        ....   ...|.   +...|.++.|+-+.+
T Consensus       365 ~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~--------~~~~---v~~~~~~~~rl~c~~~~~~~a~~  433 (463)
T KOG0270|consen  365 PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD--------SPKS---VKEHSFKLGRLHCFALDPDVAFT  433 (463)
T ss_pred             ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC--------CCcc---cccccccccceeecccCCCcceE
Confidence            255667899999999999999899999999999999999632        1111   12222   246788899987789


Q ss_pred             EEEeeCCCcEEEEecCCCC
Q psy4577         313 LLSASDDHTICLWDINATP  331 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~~~  331 (384)
                      ||.|+..+.++|||+.+..
T Consensus       434 la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  434 LAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             EEecCccceEEEeecccCh
Confidence            9999999999999999876

>KOG2096|consensus

Probab=99.88  E-value=2.5e-21  Score=151.48  Aligned_cols=259  Identities=14%  Similarity=0.158  Sum_probs=149.6

Q ss_pred             eEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccC
Q psy4577          44 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWP  123 (384)
Q Consensus        44 ~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (384)
                      .+.++.||.+.|++++|+.||+ .|||++.|++|++|++..-..    .+.       +..+.+-+           .+-
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~----~eH-------r~~R~nve-----------~dh  134 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFEN----KEH-------RCIRQNVE-----------YDH  134 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhh----hhh-------hHhhcccc-----------CCC
Confidence            4557789999999999999999 779999999999999976310    000       11111111           122


Q ss_pred             eeEEEEecCceeee-----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577         124 SLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH  198 (384)
Q Consensus       124 v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (384)
                      .+.+.|+||.+.++     ..++++|.+        ........+-..+.|... .      +            .+...
T Consensus       135 pT~V~FapDc~s~vv~~~~g~~l~vyk~--------~K~~dG~~~~~~v~~D~~-~------f------------~~kh~  187 (420)
T KOG2096|consen  135 PTRVVFAPDCKSVVVSVKRGNKLCVYKL--------VKKTDGSGSHHFVHIDNL-E------F------------ERKHQ  187 (420)
T ss_pred             ceEEEECCCcceEEEEEccCCEEEEEEe--------eecccCCCCccccccccc-c------c------------chhcc
Confidence            56799999987665     455666433        222221111000111000 0      0            00111


Q ss_pred             EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q psy4577         199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP  278 (384)
Q Consensus       199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~  278 (384)
                      ..+.++.+......+.....|....+|..-    ++..... ......-+..+.||+|. ++|+++....|++|..--..
T Consensus       188 v~~i~iGiA~~~k~imsas~dt~i~lw~lk----Gq~L~~i-dtnq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~k  261 (420)
T KOG2096|consen  188 VDIINIGIAGNAKYIMSASLDTKICLWDLK----GQLLQSI-DTNQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTK  261 (420)
T ss_pred             cceEEEeecCCceEEEEecCCCcEEEEecC----Cceeeee-ccccccccceeeCCCCc-EEEEecCCCCceEEEEEecc
Confidence            122223333333333333444444443222    2221111 11112234567799995 99999999999999864222


Q ss_pred             CCCCCCCCc---cceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee-----ccCCcE
Q psy4577         279 SKPDPNGEC---HPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-----GHTAVV  350 (384)
Q Consensus       279 ~~~~~~~~~---~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~-----~h~~~v  350 (384)
                           .|..   ....++.||+..|..++|||+. ..++|.|.||+++|||+.-.-+..+-+..+++..     .-..++
T Consensus       262 -----dG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~  335 (420)
T KOG2096|consen  262 -----DGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV  335 (420)
T ss_pred             -----CcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce
Confidence                 2322   3456899999999999999997 7999999999999999864322222222333331     123345


Q ss_pred             eEEEEecCCCccccc
Q psy4577         351 ELELIERLTKKADPV  365 (384)
Q Consensus       351 ~~~~~sp~~~~~~~~  365 (384)
                       -++.+|.|..++..
T Consensus       336 -RL~lsP~g~~lA~s  349 (420)
T KOG2096|consen  336 -RLELSPSGDSLAVS  349 (420)
T ss_pred             -EEEeCCCCcEEEee
Confidence             68899998866643

>KOG0268|consensus

Probab=99.87  E-value=1.1e-21  Score=156.01  Aligned_cols=230  Identities=14%  Similarity=0.180  Sum_probs=154.6

Q ss_pred             EEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCe
Q psy4577          45 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPS  124 (384)
Q Consensus        45 ~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  124 (384)
                      +..+.||.+.|.|++=+|.....+|||+.||.|++||+...+.             +           ..+..|  ++.|
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-------------~-----------~~f~AH--~G~V  112 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-------------I-----------RTFKAH--EGLV  112 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-------------h-----------heeecc--cCce
Confidence            4456899999999999999855789999999999999976411             1           123333  5667


Q ss_pred             eEEEEecCceeee--cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEE
Q psy4577         125 LTAQWLPDVTRVI--NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIA  202 (384)
Q Consensus       125 ~~~~~~~~~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  202 (384)
                      ..+++......-+  |.+|+.|.+..+.....+....                                         +.
T Consensus       113 ~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~-----------------------------------------~~  151 (433)
T KOG0268|consen  113 RGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSV-----------------------------------------YL  151 (433)
T ss_pred             eeEEecccceEEecCCcceeeeeccCCcceeeecccc-----------------------------------------cc
Confidence            7787777222222  8999999987642221111000                                         00


Q ss_pred             EeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCC
Q psy4577         203 SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPD  282 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~  282 (384)
                      .+.....+..+...      +.-..+|+.....++..+.--...|.++.|+|....+|++|..|+.|.+||++       
T Consensus       152 gIdh~~~~~~FaTc------Ge~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R-------  218 (433)
T KOG0268|consen  152 GIDHHRKNSVFATC------GEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR-------  218 (433)
T ss_pred             cccccccccccccc------CceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc-------
Confidence            00000000000000      00011122223334555555667899999999988899999999999999998       


Q ss_pred             CCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         283 PNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       283 ~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                       .+.  |+..+. -...-+.|+|+|.+ .-+++|++|..++.+|++....      ++..+.+|.++|.+|+|||.|...
T Consensus       219 -~~~--Pl~KVi-~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~------p~~v~~dhvsAV~dVdfsptG~Ef  287 (433)
T KOG0268|consen  219 -QAS--PLKKVI-LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSR------PLNVHKDHVSAVMDVDFSPTGQEF  287 (433)
T ss_pred             -cCC--ccceee-eeccccceecCccc-cceeeccccccceehhhhhhcc------cchhhcccceeEEEeccCCCcchh
Confidence             333  222221 12345789999987 7899999999999999998764      899999999999999999999876


Q ss_pred             ccc
Q psy4577         363 DPV  365 (384)
Q Consensus       363 ~~~  365 (384)
                      .+.
T Consensus       288 vsg  290 (433)
T KOG0268|consen  288 VSG  290 (433)
T ss_pred             ccc
Confidence            554

>KOG0301|consensus

Probab=99.87  E-value=4.6e-21  Score=164.45  Aligned_cols=200  Identities=21%  Similarity=0.281  Sum_probs=161.4

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCc
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPF   88 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~   88 (384)
                      ..|++|+.|.+|.+|....              ...+.++.||+..|.|++-..++.  ++|||-|.++++|-....   
T Consensus        72 ~~l~~g~~D~~i~v~~~~~--------------~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l---  132 (745)
T KOG0301|consen   72 GRLVVGGMDTTIIVFKLSQ--------------AEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGEL---  132 (745)
T ss_pred             cceEeecccceEEEEecCC--------------CCchhhhhccccceeeeecCCcCc--eEecccccceEEecchhh---
Confidence            3589999999999999986              467888999999999999887877  569999999999977541   


Q ss_pred             cchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceeecccccccce
Q psy4577          89 DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMTHALEWPSL  165 (384)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~  165 (384)
                                             ...+.+|  ..+|+++.+.|++.++-   |.++++|+-.+                 
T Consensus       133 -----------------------~~~l~gH--~asVWAv~~l~e~~~vTgsaDKtIklWk~~~-----------------  170 (745)
T KOG0301|consen  133 -----------------------VYSLQGH--TASVWAVASLPENTYVTGSADKTIKLWKGGT-----------------  170 (745)
T ss_pred             -----------------------hcccCCc--chheeeeeecCCCcEEeccCcceeeeccCCc-----------------
Confidence                                   1134566  77899999999986554   88888885411                 


Q ss_pred             eeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCC
Q psy4577         166 TAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEG  245 (384)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (384)
                                                                                            .+..+.+|.+
T Consensus       171 ----------------------------------------------------------------------~l~tf~gHtD  180 (745)
T KOG0301|consen  171 ----------------------------------------------------------------------LLKTFSGHTD  180 (745)
T ss_pred             ----------------------------------------------------------------------hhhhhccchh
Confidence                                                                                  0233347999


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      .|+++++-+++  -|+++++||.|+.|++         ++.  .+..+.||+..|++++..+++ +.++|+++|++++||
T Consensus       181 ~VRgL~vl~~~--~flScsNDg~Ir~w~~---------~ge--~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW  246 (745)
T KOG0301|consen  181 CVRGLAVLDDS--HFLSCSNDGSIRLWDL---------DGE--VLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIW  246 (745)
T ss_pred             heeeeEEecCC--CeEeecCCceEEEEec---------cCc--eeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEe
Confidence            99999999987  4789999999999998         444  466899999999999977776 699999999999999


Q ss_pred             ecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         326 DINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       326 d~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      +..  .       +.+.+.-....|+++.+=+.|...
T Consensus       247 ~~~--e-------~~q~I~lPttsiWsa~~L~NgDIv  274 (745)
T KOG0301|consen  247 KKD--E-------CVQVITLPTTSIWSAKVLLNGDIV  274 (745)
T ss_pred             ecC--c-------eEEEEecCccceEEEEEeeCCCEE
Confidence            988  3       777776555689999988877753

>KOG0641|consensus

Probab=99.87  E-value=1.1e-19  Score=135.73  Aligned_cols=262  Identities=16%  Similarity=0.151  Sum_probs=157.1

Q ss_pred             CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec
Q psy4577          42 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE  121 (384)
Q Consensus        42 ~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (384)
                      .+.+.++.. +..|.+++|+|.|. +.|.||..+++||-....--......+.          -...+.+ .......+.
T Consensus        23 f~~i~~l~d-sqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea----------~~~pp~v-~~kr~khhk   89 (350)
T KOG0641|consen   23 FEAINILED-SQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEA----------AKQPPSV-LCKRNKHHK   89 (350)
T ss_pred             eEEEEEecc-hhheeeEEecCCCc-eEEeccCCceEEEEccccccCccccccc----------ccCCCeE-EeeeccccC
Confidence            445555554 56899999999999 8889999999999754331000000000          0000111 011111237


Q ss_pred             cCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCC
Q psy4577         122 WPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQN  197 (384)
Q Consensus       122 ~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (384)
                      ++|++.+|+|.|..++    |.+|++-..+..+...  .++..+                          +..+.     
T Consensus        90 gsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~--~g~dle--------------------------~nmhd-----  136 (350)
T KOG0641|consen   90 GSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA--TGHDLE--------------------------FNMHD-----  136 (350)
T ss_pred             ccEEEEEecCccCeEEecCCCceEEEEecccccccc--cCccee--------------------------eeecC-----
Confidence            7899999999999998    6666654332222110  111111                          11111     


Q ss_pred             eEEEEEeec---CCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy4577         198 HLLIASVQL---PNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDY  274 (384)
Q Consensus       198 ~~~i~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~  274 (384)
                       ..|..+.|   +..++.+++..--..++++..  +.........+.+|.+.|.++- +-++ -++++|+.|.+||+||+
T Consensus       137 -gtirdl~fld~~~s~~~il~s~gagdc~iy~t--dc~~g~~~~a~sghtghilaly-swn~-~m~~sgsqdktirfwdl  211 (350)
T KOG0641|consen  137 -GTIRDLAFLDDPESGGAILASAGAGDCKIYIT--DCGRGQGFHALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDL  211 (350)
T ss_pred             -CceeeeEEecCCCcCceEEEecCCCcceEEEe--ecCCCCcceeecCCcccEEEEE-EecC-cEEEccCCCceEEEEee
Confidence             01222222   112222333322222222211  0011112455668999998763 4456 49999999999999999


Q ss_pred             CCCCCCCCCCCCccceeeecCC-----CCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCc
Q psy4577         275 TKHPSKPDPNGECHPDLRLRGH-----QKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAV  349 (384)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~h-----~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~  349 (384)
                      +.        ..+.....-..|     ...|.+++..|.| ++|++|-.|.+..+||++.++       +++.+..|+..
T Consensus       212 rv--------~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r-------~iq~f~phsad  275 (350)
T KOG0641|consen  212 RV--------NSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGR-------MIQRFHPHSAD  275 (350)
T ss_pred             ec--------cceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCc-------eeeeeCCCccc
Confidence            83        222222111222     2579999999999 899999999999999999999       99999999999


Q ss_pred             EeEEEEecCCCccccccccccc
Q psy4577         350 VELELIERLTKKADPVCTLEKA  371 (384)
Q Consensus       350 v~~~~~sp~~~~~~~~c~~~~~  371 (384)
                      |.++.|||....+.+ |+.+.+
T Consensus       276 ir~vrfsp~a~yllt-~syd~~  296 (350)
T KOG0641|consen  276 IRCVRFSPGAHYLLT-CSYDMK  296 (350)
T ss_pred             eeEEEeCCCceEEEE-ecccce
Confidence            999999997776554 443333

>KOG0300|consensus

Probab=99.87  E-value=5.4e-21  Score=149.65  Aligned_cols=264  Identities=15%  Similarity=0.173  Sum_probs=180.0

Q ss_pred             CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec
Q psy4577          42 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE  121 (384)
Q Consensus        42 ~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (384)
                      .++...+.||++.|..++-....+ ++.++|.|.+.+||.++++..+                        ..+.||  .
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL------------------------~~Y~GH--~  190 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACL------------------------ATYTGH--T  190 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccce------------------------eeeccc--c
Confidence            355667789999999999887777 8999999999999999886321                        244566  6


Q ss_pred             cCeeEEEEecCceeee----cceeeeeccc------cccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeee
Q psy4577         122 WPSLTAQWLPDVTRVI----NEEYKIWKKN------TPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTH  191 (384)
Q Consensus       122 ~~v~~~~~~~~~~~~~----d~~v~~w~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (384)
                      ++|.++.|++.+..++    |++-.||...      .+....-.... .+..+. -...++.......+....+.-+-..
T Consensus       191 GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE-eE~e~s-De~~~d~d~~~~sD~~tiRvPl~~l  268 (481)
T KOG0300|consen  191 GSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE-EEEEHS-DEHNRDTDSSEKSDGHTIRVPLMRL  268 (481)
T ss_pred             cceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch-hhhhcc-cccccccccccccCCceeeeeeeee
Confidence            7899999999998877    8889999732      11111000000 000000 1111222111122211111111111


Q ss_pred             ccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEE
Q psy4577         192 TSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLV  271 (384)
Q Consensus       192 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~i  271 (384)
                      .   .+...+....+...+.++....||.....|+.    .....+..+.+|....+-++-+|.. .++++++.|.+.|+
T Consensus       269 t---gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDV----Etge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRL  340 (481)
T KOG0300|consen  269 T---GHRAVVSACDWLAGGQQMVTASWDRTANLWDV----ETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRL  340 (481)
T ss_pred             e---ccccceEehhhhcCcceeeeeeccccceeeee----ccCceeccccCcchhccccccCCcc-eEEEEeccCceeEe
Confidence            1   12234555667778888899999988877644    3344466778999999999999987 49999999999999


Q ss_pred             EecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEe
Q psy4577         272 FDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE  351 (384)
Q Consensus       272 wd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~  351 (384)
                      ||++         .....+..|+||...|+++.|..+.  .+++||.|.+|++||+++.+.      ++.+++ -.++++
T Consensus       341 WDFR---------eaI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRs------plATIR-tdS~~N  402 (481)
T KOG0300|consen  341 WDFR---------EAIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRS------PLATIR-TDSPAN  402 (481)
T ss_pred             ccch---------hhcceeeeecccccceeEEEEecCC--ceeecCCCceEEEeeeccccC------cceeee-cCCccc
Confidence            9996         2334567899999999999999884  689999999999999998763      666665 334566


Q ss_pred             EEEEecCCC
Q psy4577         352 LELIERLTK  360 (384)
Q Consensus       352 ~~~~sp~~~  360 (384)
                      -++.+.-++
T Consensus       403 Rvavs~g~~  411 (481)
T KOG0300|consen  403 RVAVSKGHP  411 (481)
T ss_pred             eeEeecCCc
Confidence            666555443

>KOG0305|consensus

Probab=99.87  E-value=1.2e-20  Score=161.09  Aligned_cols=216  Identities=16%  Similarity=0.243  Sum_probs=154.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+..+  .||+|. ...|++|+..+.              .+.....-+...|+++.|+++|. .||.|..+|+|.||
T Consensus       183 ldWss~n--~laVal-g~~vylW~~~s~--------------~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iw  244 (484)
T KOG0305|consen  183 LDWSSAN--VLAVAL-GQSVYLWSASSG--------------SVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIW  244 (484)
T ss_pred             hhcccCC--eEEEEe-cceEEEEecCCC--------------ceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEE
Confidence            4677544  578875 457999998761              22333333478999999999999 88999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceee-eeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMT-HALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |....+..                    +    .+.+ |  ...|.+++|...  .+.    ++.+..+|++....    
T Consensus       245 D~~~~k~~--------------------~----~~~~~h--~~rvg~laW~~~--~lssGsr~~~I~~~dvR~~~~----  292 (484)
T KOG0305|consen  245 DVKEQKKT--------------------R----TLRGSH--ASRVGSLAWNSS--VLSSGSRDGKILNHDVRISQH----  292 (484)
T ss_pred             ehhhcccc--------------------c----cccCCc--CceeEEEeccCc--eEEEecCCCcEEEEEEecchh----
Confidence            99764111                    1    1112 3  556777887732  111    33333322211000    


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                     .
T Consensus       293 -------------------------------------------------------------------------------~  293 (484)
T KOG0305|consen  293 -------------------------------------------------------------------------------V  293 (484)
T ss_pred             -------------------------------------------------------------------------------h
Confidence                                                                                           0


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                       ...+.+|...|..+.|++++. +||+|+.|+.+.|||..          ...++..+..|.+.|..++|+|-.+.+||+
T Consensus       294 -~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~----------~~~p~~~~~~H~aAVKA~awcP~q~~lLAs  361 (484)
T KOG0305|consen  294 -VSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGL----------SPEPKFTFTEHTAAVKALAWCPWQSGLLAT  361 (484)
T ss_pred             -hhhhhcccceeeeeEECCCCC-eeccCCCccceEeccCC----------CccccEEEeccceeeeEeeeCCCccCceEE
Confidence             112457999999999999995 99999999999999984          234677999999999999999987689999


Q ss_pred             ee--CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         316 AS--DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       316 ~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      |+  .|+.|++||+.++.       .+.... -.+.|..|.|++..+.+.+.
T Consensus       362 GGGs~D~~i~fwn~~~g~-------~i~~vd-tgsQVcsL~Wsk~~kEi~st  405 (484)
T KOG0305|consen  362 GGGSADRCIKFWNTNTGA-------RIDSVD-TGSQVCSLIWSKKYKELLST  405 (484)
T ss_pred             cCCCcccEEEEEEcCCCc-------Eecccc-cCCceeeEEEcCCCCEEEEe
Confidence            77  59999999999987       655553 34568899999888655443

>KOG0270|consensus

Probab=99.87  E-value=6.2e-21  Score=155.51  Aligned_cols=203  Identities=23%  Similarity=0.330  Sum_probs=147.1

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcc---cccCCC----CCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEE---QSTEDA----EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~---~~~~~~----~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      +++|.|..|..|.|||+.-...-   ......    .....+.-....+|++.|.+|+|+..-+++|||||.|.+|++||
T Consensus       193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD  272 (463)
T KOG0270|consen  193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD  272 (463)
T ss_pred             ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence            58999999999999998642200   000000    00000011123479999999999999888999999999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceee
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~  156 (384)
                      +.+++.-                        .++..|  ...|.++.|+|....++     |++|.+.|.+.+..     
T Consensus       273 ~~~g~p~------------------------~s~~~~--~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-----  321 (463)
T KOG0270|consen  273 VDTGKPK------------------------SSITHH--GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-----  321 (463)
T ss_pred             cCCCCcc------------------------eehhhc--CCceeEEEecCCCceEEEeccccceEEeeeccCccc-----
Confidence            9886221                        122222  67799999999865443     66666654432100     


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                                                                                      
T Consensus       322 --------------------------------------------------------------------------------  321 (463)
T KOG0270|consen  322 --------------------------------------------------------------------------------  321 (463)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ........+.|-.++|.|...+.++++..||+++-+|+|.         ..+++.++..|.++|.+|++++.-+++|+|+
T Consensus       322 s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~---------~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~  392 (463)
T KOG0270|consen  322 SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRN---------PGKPVWTLKAHDDEISGLSVNIQTPGLLSTA  392 (463)
T ss_pred             cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCC---------CCCceeEEEeccCCcceEEecCCCCcceeec
Confidence            0000123456889999999888999999999999999974         2268889999999999999999988999999


Q ss_pred             eCCCcEEEEecCCCC
Q psy4577         317 SDDHTICLWDINATP  331 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~  331 (384)
                      |.|+.|++|++...+
T Consensus       393 s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  393 STDKVVKLWKFDVDS  407 (463)
T ss_pred             cccceEEEEeecCCC
Confidence            999999999998765

>KOG0269|consensus

Probab=99.87  E-value=3e-21  Score=167.60  Aligned_cols=192  Identities=14%  Similarity=0.244  Sum_probs=146.6

Q ss_pred             ceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCc
Q psy4577          54 KISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV  133 (384)
Q Consensus        54 ~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (384)
                      .+.++.|.....++|||++..|.|.+||+...                    ...+ +...+..|  +-.+.++.|++..
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~--------------------~rnk-~l~~f~EH--~Rs~~~ldfh~te  145 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKS--------------------IRNK-LLTVFNEH--ERSANKLDFHSTE  145 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCcc--------------------ccch-hhhHhhhh--ccceeeeeeccCC
Confidence            46678898766679999999999999999652                    0011 11233344  5568899999988


Q ss_pred             eeee-----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCC
Q psy4577         134 TRVI-----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPN  208 (384)
Q Consensus       134 ~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  208 (384)
                      ..++     ||+|+.||++...-..+                                                      
T Consensus       146 p~iliSGSQDg~vK~~DlR~~~S~~t------------------------------------------------------  171 (839)
T KOG0269|consen  146 PNILISGSQDGTVKCWDLRSKKSKST------------------------------------------------------  171 (839)
T ss_pred             ccEEEecCCCceEEEEeeeccccccc------------------------------------------------------
Confidence            7666     99999998854322110                                                      


Q ss_pred             CCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcc
Q psy4577         209 EDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECH  288 (384)
Q Consensus       209 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  288 (384)
                                                     ..+....|+.|.|+|...+.|+++.+.|.+++||+|+         ...
T Consensus       172 -------------------------------~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq---------p~r  211 (839)
T KOG0269|consen  172 -------------------------------FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ---------PDR  211 (839)
T ss_pred             -------------------------------ccccchhhhceeeccCCCceEEEecCCceEEEeeccC---------chh
Confidence                                           1123456889999998778999999999999999974         223


Q ss_pred             ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         289 PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       289 ~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      +...+.+|.++|.++.|+|++ .+|||||.|++|+|||..+.+..     ++.++. -..+|..|.|-|+.+...+.|+.
T Consensus       212 ~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~-----~~~tIn-Tiapv~rVkWRP~~~~hLAtcsm  284 (839)
T KOG0269|consen  212 CEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAK-----PKHTIN-TIAPVGRVKWRPARSYHLATCSM  284 (839)
T ss_pred             HHHHhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCcc-----ceeEEe-ecceeeeeeeccCccchhhhhhc
Confidence            566889999999999999998 79999999999999999976522     344332 34689999999999988888864


Q ss_pred             c
Q psy4577         369 E  369 (384)
Q Consensus       369 ~  369 (384)
                      .
T Consensus       285 v  285 (839)
T KOG0269|consen  285 V  285 (839)
T ss_pred             c
Confidence            3

>KOG0308|consensus

Probab=99.87  E-value=6.5e-21  Score=162.45  Aligned_cols=200  Identities=13%  Similarity=0.139  Sum_probs=150.2

Q ss_pred             CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEE-ccCCCcEEEEEecCCeEEEEEccc
Q psy4577           6 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW-NPNEPWVICSVSEDNIMQILSVVC   84 (384)
Q Consensus         6 ~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~-~~~~~~~l~s~s~D~~i~vwd~~~   84 (384)
                      +++ .|+++|.|-+|++|+.....            .-++.++..|++.|.||+. .++.. ++||||.|+.|.+||+++
T Consensus        84 ~~~-tlIS~SsDtTVK~W~~~~~~------------~~c~stir~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~  149 (735)
T KOG0308|consen   84 NGK-TLISASSDTTVKVWNAHKDN------------TFCMSTIRTHKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINT  149 (735)
T ss_pred             CCC-ceEEecCCceEEEeecccCc------------chhHhhhhcccchheeeeecccCce-eEEecCCCccEEEEEccC
Confidence            454 59999999999999987521            2456777899999999999 66666 999999999999999987


Q ss_pred             CCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecccc
Q psy4577          85 VEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHAL  160 (384)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~  160 (384)
                      +...           .+..++.  .....+..|+  ..++++++..+.|..++    .+.+++||.++..          
T Consensus       150 ~~~~-----------l~~s~n~--~t~~sl~sG~--k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~----------  204 (735)
T KOG0308|consen  150 GTAT-----------LVASFNN--VTVNSLGSGP--KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK----------  204 (735)
T ss_pred             cchh-----------hhhhccc--cccccCCCCC--ccceeeeecCCcceEEEecCcccceEEecccccc----------
Confidence            6210           0000000  0000011133  67888999999887776    4455666543211          


Q ss_pred             cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEE
Q psy4577         161 EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK  240 (384)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  240 (384)
                                                                                                 .+-.+
T Consensus       205 ---------------------------------------------------------------------------kimkL  209 (735)
T KOG0308|consen  205 ---------------------------------------------------------------------------KIMKL  209 (735)
T ss_pred             ---------------------------------------------------------------------------ceeee
Confidence                                                                                       12334


Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      .+|...|..+..+++|. .++++|.||+|++||+.        ..  ..+.++..|...|+++..+|+- ..+.+|+.||
T Consensus       210 rGHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLg--------qQ--rCl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~  277 (735)
T KOG0308|consen  210 RGHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLG--------QQ--RCLATYIVHKEGVWALQSSPSF-THVYSGGRDG  277 (735)
T ss_pred             eccccceEEEEEcCCCC-eEeecCCCceEEeeecc--------cc--ceeeeEEeccCceEEEeeCCCc-ceEEecCCCC
Confidence            48999999999999995 89999999999999996        23  3456788999999999999998 7999999999


Q ss_pred             cEEEEecCCCC
Q psy4577         321 TICLWDINATP  331 (384)
Q Consensus       321 ~i~iwd~~~~~  331 (384)
                      .|..=|+++..
T Consensus       278 ~i~~Tdl~n~~  288 (735)
T KOG0308|consen  278 NIYRTDLRNPA  288 (735)
T ss_pred             cEEecccCCch
Confidence            99999999854

>KOG2106|consensus

Probab=99.87  E-value=1.8e-19  Score=149.39  Aligned_cols=290  Identities=14%  Similarity=0.134  Sum_probs=187.8

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccc-ccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      .|+|.+++++++++ -+.+..|+++...-           .+....+.++ +.-|.|++|.++|.  ++||..+|.|.||
T Consensus       207 ~FHPtd~nliit~G-k~H~~Fw~~~~~~l-----------~k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw  272 (626)
T KOG2106|consen  207 TFHPTDPNLIITCG-KGHLYFWTLRGGSL-----------VKRQGIFEKREKKFVLCVTFLENGD--VITGDSGGNILIW  272 (626)
T ss_pred             EeccCCCcEEEEeC-CceEEEEEccCCce-----------EEEeeccccccceEEEEEEEcCCCC--EEeecCCceEEEE
Confidence            69999999888887 56799999886320           1111222222 35799999999999  4599999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceeec
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~  157 (384)
                      +..+.                +        +  ....|.++..|.+++...+|+.+-   |..|..||-+-.+..+....
T Consensus       273 ~~~~~----------------~--------~--~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elP  326 (626)
T KOG2106|consen  273 SKGTN----------------R--------I--SKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELP  326 (626)
T ss_pred             eCCCc----------------e--------E--EeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCc
Confidence            98552                1        1  111234488899999999999887   88899999543333222111


Q ss_pred             ccccccceeeeeccCCCCCCCCccce----eEEEEeeeccC-----CCCeEEEEEeecCCCCcccccccccCcCCCCCCc
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSI----HRLILGTHTSD-----EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGF  228 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~  228 (384)
                      .+.. +..++..       ...++-+    ..++.|+....     ..+.-..+.+...+...+++....|....+|.  
T Consensus       327 e~~G-~iRtv~e-------~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--  396 (626)
T KOG2106|consen  327 EQFG-PIRTVAE-------GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--  396 (626)
T ss_pred             hhcC-CeeEEec-------CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--
Confidence            1111 1111110       0001000    01111211110     01111356666777777888888887777663  


Q ss_pred             cCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCC
Q psy4577         229 GSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPS  308 (384)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~  308 (384)
                         ..++....  .-..++.++.|+|.|  .+|.|+..|...+.|...           ..+.++.-...++++++|+|+
T Consensus       397 ---~~k~~wt~--~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~-----------~~lv~~~~d~~~ls~v~ysp~  458 (626)
T KOG2106|consen  397 ---DHKLEWTK--IIEDPAECADFHPSG--VVAVGTATGRWFVLDTET-----------QDLVTIHTDNEQLSVVRYSPD  458 (626)
T ss_pred             ---CCceeEEE--EecCceeEeeccCcc--eEEEeeccceEEEEeccc-----------ceeEEEEecCCceEEEEEcCC
Confidence               22322222  345778899999988  788899999999999852           223344444779999999999


Q ss_pred             CCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         309 LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       309 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      | .+||.|+.|+.|+||-+..+...   ...+...  |.++|+.++||+|++.+.+.
T Consensus       459 G-~~lAvgs~d~~iyiy~Vs~~g~~---y~r~~k~--~gs~ithLDwS~Ds~~~~~~  509 (626)
T KOG2106|consen  459 G-AFLAVGSHDNHIYIYRVSANGRK---YSRVGKC--SGSPITHLDWSSDSQFLVSN  509 (626)
T ss_pred             C-CEEEEecCCCeEEEEEECCCCcE---EEEeeee--cCceeEEeeecCCCceEEec
Confidence            9 79999999999999999876521   1123333  44899999999999977665

>KOG0640|consensus

Probab=99.87  E-value=4.9e-21  Score=149.34  Aligned_cols=213  Identities=14%  Similarity=0.166  Sum_probs=154.0

Q ss_pred             EEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCee
Q psy4577          46 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSL  125 (384)
Q Consensus        46 ~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  125 (384)
                      ..+..|++++.+.+|+|||. ++|+||.|..|+|.|++..-.-.... +...+++    ....| +.+++-.|  .++|.
T Consensus       106 ~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~-em~~~~~----qa~hP-vIRTlYDH--~devn  176 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPK-EMISGDT----QARHP-VIRTLYDH--VDEVN  176 (430)
T ss_pred             EEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchh-hhccCCc----ccCCc-eEeehhhc--cCccc
Confidence            34578999999999999999 99999999999999997431000000 0000000    01112 22445556  67899


Q ss_pred             EEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEE
Q psy4577         126 TAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLI  201 (384)
Q Consensus       126 ~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  201 (384)
                      .+.|+|....++    |++|+++|.........++                                             
T Consensus       177 ~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K---------------------------------------------  211 (430)
T KOG0640|consen  177 DLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFK---------------------------------------------  211 (430)
T ss_pred             ceeecchhheEEeccCCCeEEEEecccHHHHHHHH---------------------------------------------
Confidence            999999998887    8888887664433211100                                             


Q ss_pred             EEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q psy4577         202 ASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP  281 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~  281 (384)
                                                            ......+|.++.|+|.|. +|+.|.+-.++|+||++      
T Consensus       212 --------------------------------------~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~------  246 (430)
T KOG0640|consen  212 --------------------------------------VFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVN------  246 (430)
T ss_pred             --------------------------------------HhhccceeeeEeecCCCc-eEEEecCCCceeEEecc------
Confidence                                                  012234689999999996 99999999999999997      


Q ss_pred             CCCCCcc-ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee-ccCC-cEeEEEEecC
Q psy4577         282 DPNGECH-PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-GHTA-VVELELIERL  358 (384)
Q Consensus       282 ~~~~~~~-~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~sp~  358 (384)
                        +.++- +-..-.+|.+.|+++.+++.+ ++.+|||.||.|+|||--+++       ++.++. +|.+ .|.+..|..+
T Consensus       247 --T~QcfvsanPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r-------Cv~t~~~AH~gsevcSa~Ftkn  316 (430)
T KOG0640|consen  247 --TYQCFVSANPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR-------CVRTIGNAHGGSEVCSAVFTKN  316 (430)
T ss_pred             --ceeEeeecCcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHH-------HHHHHHhhcCCceeeeEEEccC
Confidence              32221 111235699999999999999 799999999999999999988       999886 4654 6999999999


Q ss_pred             CCccccccc
Q psy4577         359 TKKADPVCT  367 (384)
Q Consensus       359 ~~~~~~~c~  367 (384)
                      ++.+.+...
T Consensus       317 ~kyiLsSG~  325 (430)
T KOG0640|consen  317 GKYILSSGK  325 (430)
T ss_pred             CeEEeecCC
Confidence            998877644

>KOG1063|consensus

Probab=99.87  E-value=1.7e-20  Score=161.03  Aligned_cols=339  Identities=18%  Similarity=0.182  Sum_probs=223.6

Q ss_pred             CCC-CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCC--CcEEEEEecCCeEEE
Q psy4577           3 WSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNIMQI   79 (384)
Q Consensus         3 fsp-~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~--~~~l~s~s~D~~i~v   79 (384)
                      +.| .+..+||.|+.+..|.++.-..            ...+.+..+.||.+.|.+|+|...+  ..+|||+|.|..|||
T Consensus       153 ~~~~~~~~lla~Ggs~~~v~~~s~~~------------d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRi  220 (764)
T KOG1063|consen  153 ALKNNKTFLLACGGSKFVVDLYSSSA------------DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRI  220 (764)
T ss_pred             hhccCCcEEEEecCcceEEEEeccCC------------cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEE
Confidence            344 3445788888898899987653            2357788899999999999997654  467999999999999


Q ss_pred             EEcccCCCccchhhe-----------eeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeee
Q psy4577          80 LSVVCVEPFDDAVEE-----------RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIW  144 (384)
Q Consensus        80 wd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w  144 (384)
                      |.+.-.........+           ......+. +.   -....++.||  ++-|+++.|+|.+..++    |.++.+|
T Consensus       221 W~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~-~~---is~eall~GH--eDWV~sv~W~p~~~~LLSASaDksmiiW  294 (764)
T KOG1063|consen  221 WRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQ-YR---ISFEALLMGH--EDWVYSVWWHPEGLDLLSASADKSMIIW  294 (764)
T ss_pred             EEEEecCCccccccccccccccCCceeeeeeeEE-EE---EehhhhhcCc--ccceEEEEEccchhhheecccCcceEEE
Confidence            998654221100000           00000111 00   0122456688  89999999999996665    9999999


Q ss_pred             ccccccc--cceeecccccc---cceeeeeccCCC--CCCCCccceeEEEEeeecc--------CCCCeEEEEEeecCCC
Q psy4577         145 KKNTPFL--YDLVMTHALEW---PSLTAQWLPDVT--RPEGKDYSIHRLILGTHTS--------DEQNHLLIASVQLPNE  209 (384)
Q Consensus       145 ~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~  209 (384)
                      ......-  .+.+.-.....   .-....|.++..  ...+.....+.+.  +...        -..+...+..+.+.+.
T Consensus       295 ~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk--t~d~~~w~~~~~iSGH~~~V~dv~W~ps  372 (764)
T KOG1063|consen  295 KPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK--TKDKTFWTQEPVISGHVDGVKDVDWDPS  372 (764)
T ss_pred             ecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe--ccCccceeeccccccccccceeeeecCC
Confidence            8755411  11111111110   012344555542  1111111111111  1110        0122335778889999


Q ss_pred             CcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC-----------
Q psy4577         210 DAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP-----------  278 (384)
Q Consensus       210 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~-----------  278 (384)
                      +..++....|.+.+.|...+.......+.+.+-|...++|++|-+.. ..|++|.+...+|+|+....-           
T Consensus       373 GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~  451 (764)
T KOG1063|consen  373 GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKC  451 (764)
T ss_pred             CCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCcc
Confidence            99999999999999987765555555666667899999999999854 589999999999999765200           


Q ss_pred             -CC------------------C-C--C--CC-------------------------------CccceeeecCCCCceEEE
Q psy4577         279 -SK------------------P-D--P--NG-------------------------------ECHPDLRLRGHQKEGYGL  303 (384)
Q Consensus       279 -~~------------------~-~--~--~~-------------------------------~~~~~~~~~~h~~~i~~~  303 (384)
                       ..                  . .  .  ++                               ....+..+.||.-.|+++
T Consensus       452 ~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l  531 (764)
T KOG1063|consen  452 FKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYAL  531 (764)
T ss_pred             ccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEE
Confidence             00                  0 0  0  00                               001123457899999999


Q ss_pred             EeCCCCCCeEEEeeCC-----CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccc
Q psy4577         304 SWNPSLNGYLLSASDD-----HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEK  370 (384)
Q Consensus       304 ~~s~~~~~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~  370 (384)
                      +.+|+| +++||+...     ..|++|+..+-.       .++.+.+|+-.|+.++|||||+.+.++|-.-.
T Consensus       532 ~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~-------~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt  595 (764)
T KOG1063|consen  532 AISPTG-NLIASACKSSLKEHAVIRLWNTANWL-------QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT  595 (764)
T ss_pred             EecCCC-CEEeehhhhCCccceEEEEEeccchh-------hhheecccceEEEEEEECCCCcEEEEeecCce
Confidence            999999 799999865     479999999887       77789999999999999999999999865443

>KOG1332|consensus

Probab=99.86  E-value=1.5e-20  Score=141.74  Aligned_cols=216  Identities=21%  Similarity=0.340  Sum_probs=140.1

Q ss_pred             CCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCc-EEEEEecCCeEEEEEc
Q psy4577           4 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-VICSVSEDNIMQILSV   82 (384)
Q Consensus         4 sp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~-~l~s~s~D~~i~vwd~   82 (384)
                      +|.-..+||+++.||.|.||.-++            +.......+..|...|++++|.|.+-. +||+++.||.|.|.+.
T Consensus        66 hPk~G~iLAScsYDgkVIiWke~~------------g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~  133 (299)
T KOG1332|consen   66 HPKFGTILASCSYDGKVIIWKEEN------------GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTY  133 (299)
T ss_pred             ccccCcEeeEeecCceEEEEecCC------------CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEE
Confidence            455446999999999999999765            235566777899999999999997643 5889999999999988


Q ss_pred             ccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC---ceeeecceeeeeccccccccceeeccc
Q psy4577          83 VCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD---VTRVINEEYKIWKKNTPFLYDLVMTHA  159 (384)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~d~~v~~w~~~~~~~~~~~~~~~  159 (384)
                      ....                .|...     ++...|  +-.|.+++|.|.   |..+-                    +.
T Consensus       134 ~~~g----------------~w~t~-----ki~~aH--~~GvnsVswapa~~~g~~~~--------------------~~  170 (299)
T KOG1332|consen  134 DSSG----------------GWTTS-----KIVFAH--EIGVNSVSWAPASAPGSLVD--------------------QG  170 (299)
T ss_pred             cCCC----------------Cccch-----hhhhcc--ccccceeeecCcCCCccccc--------------------cC
Confidence            6530                11111     122233  556788999886   21110                    00


Q ss_pred             ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE
Q psy4577         160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI  239 (384)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  239 (384)
                      .                   .-.+.+++.|.    ..+.+.|+...                ...|         .....
T Consensus       171 ~-------------------~~~~krlvSgG----cDn~VkiW~~~----------------~~~w---------~~e~~  202 (299)
T KOG1332|consen  171 P-------------------AAKVKRLVSGG----CDNLVKIWKFD----------------SDSW---------KLERT  202 (299)
T ss_pred             c-------------------ccccceeeccC----CccceeeeecC----------------Ccch---------hhhhh
Confidence            0                   00001111110    11222222221                1111         11223


Q ss_pred             EeecCCceEEEEEcCCC---CcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         240 KINHEGEVNRARYMPQN---PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      +.+|.+-|+.++|.|..   +..+|++|.||++.||..+...      +..+ ...+......+..+.||+.| +.|+.+
T Consensus       203 l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~------e~wk-~tll~~f~~~~w~vSWS~sG-n~LaVs  274 (299)
T KOG1332|consen  203 LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY------EPWK-KTLLEEFPDVVWRVSWSLSG-NILAVS  274 (299)
T ss_pred             hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc------Cccc-ccccccCCcceEEEEEeccc-cEEEEe
Confidence            66899999999999963   4689999999999999876321      1111 22334456789999999999 799999


Q ss_pred             eCCCcEEEEecCCC
Q psy4577         317 SDDHTICLWDINAT  330 (384)
Q Consensus       317 s~Dg~i~iwd~~~~  330 (384)
                      +.|+.|.+|.-...
T Consensus       275 ~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  275 GGDNKVTLWKENVD  288 (299)
T ss_pred             cCCcEEEEEEeCCC
Confidence            99999999976643

>KOG0642|consensus

Probab=99.86  E-value=2e-20  Score=157.04  Aligned_cols=263  Identities=15%  Similarity=0.169  Sum_probs=171.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|..+ -|++|+.||+|++|+++...      .......+.+.++.+|.++|.|++..+++. .+++|+.||+|+.|
T Consensus       300 l~~~~sep-~lit~sed~~lk~WnLqk~~------~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~Dg~I~~w  371 (577)
T KOG0642|consen  300 LAFHPSEP-VLITASEDGTLKLWNLQKAK------KSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGIDGTIRCW  371 (577)
T ss_pred             hhcCCCCC-eEEEeccccchhhhhhcccC------CccccceeeeEEEecccCceEEEEecCCce-EEEeeccCceeeee
Confidence            36888887 59999999999999995311      111223467889999999999999999999 66799999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccC-CcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKN-TPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      ++..... +              ++.. ...+...+.||  .+.++.+++++...+++    ||++++|+...... .++
T Consensus       372 ~~p~n~d-p--------------~ds~dp~vl~~~l~Gh--tdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f  433 (577)
T KOG0642|consen  372 NLPPNQD-P--------------DDSYDPSVLSGTLLGH--TDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTF  433 (577)
T ss_pred             ccCCCCC-c--------------ccccCcchhccceecc--ccceeeeeecccccceeeecCCceEEeeccCCcCc-ccc
Confidence            8873211 1              0111 11244566778  78899999999887776    99999999865544 111


Q ss_pred             ecc-cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         156 MTH-ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       156 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      ... .... .+++++......                       ..+.+..      ......++....         ..
T Consensus       434 ~~~~e~g~-Plsvd~~ss~~a-----------------------~~~~s~~------~~~~~~~~~ev~---------s~  474 (577)
T KOG0642|consen  434 GEPKEHGY-PLSVDRTSSRPA-----------------------HSLASFR------FGYTSIDDMEVV---------SD  474 (577)
T ss_pred             CCccccCC-cceEeeccchhH-----------------------hhhhhcc------cccccchhhhhh---------hh
Confidence            111 1111 122222111100                       0000000      000000010000         00


Q ss_pred             eeEEE-----EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC
Q psy4577         235 IEIEI-----KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL  309 (384)
Q Consensus       235 ~~~~~-----~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~  309 (384)
                      +.+..     ...-...++.+.++|..+ +.+++..|+.|+++|-.          ...++.....|...++++++.|+|
T Consensus       475 ~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~----------~~~~l~s~~a~~~svtslai~~ng  543 (577)
T KOG0642|consen  475 LLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNK----------TGKILHSMVAHKDSVTSLAIDPNG  543 (577)
T ss_pred             eeeccccCCCcccccCccceEEecCCCC-eeEecccCCceeccccc----------ccccchheeeccceecceeecCCC
Confidence            00000     001224577888899986 89999999999999965          334667888899999999999999


Q ss_pred             CCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccC
Q psy4577         310 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT  347 (384)
Q Consensus       310 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~  347 (384)
                       -+|++++.|+++++|.+....       ++.....|.
T Consensus       544 -~~l~s~s~d~sv~l~kld~k~-------~~~es~~~r  573 (577)
T KOG0642|consen  544 -PYLMSGSHDGSVRLWKLDVKT-------CVLESTAHR  573 (577)
T ss_pred             -ceEEeecCCceeehhhccchh-------eeecccccc
Confidence             599999999999999998776       666655554

>KOG0290|consensus

Probab=99.86  E-value=1.9e-20  Score=144.73  Aligned_cols=244  Identities=20%  Similarity=0.324  Sum_probs=172.2

Q ss_pred             CCCCCC----CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeE--EEecccccceEEEEEccCCCcEEEEEecCC
Q psy4577           2 QWSPHN----ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL--FIHGGHTAKISDFSWNPNEPWVICSVSEDN   75 (384)
Q Consensus         2 ~fsp~~----~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~   75 (384)
                      .|.|+.    +.+|||++  ..+|||.+..+......       ...+  .....+..++++..|+.-.+++|.++|.|-
T Consensus       103 ~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~-------~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT  173 (364)
T KOG0290|consen  103 MWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL-------QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT  173 (364)
T ss_pred             EecCCccccCcchhhccc--CeEEEEeccCcCCceeh-------hhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence            467765    35788875  47999998752110000       0001  112346679999999998888999999999


Q ss_pred             eEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccc
Q psy4577          76 IMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPF  150 (384)
Q Consensus        76 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~  150 (384)
                      ++.|||++.+..                     ..+...+..|  ..+|+.++|..++..++     ||+||++|++...
T Consensus       174 TCTiWdie~~~~---------------------~~vkTQLIAH--DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le  230 (364)
T KOG0290|consen  174 TCTIWDIETGVS---------------------GTVKTQLIAH--DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE  230 (364)
T ss_pred             eEEEEEEeeccc---------------------cceeeEEEec--CcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence            999999988511                     0111233345  77899999999886665     9999998774311


Q ss_pred             ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577         151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS  230 (384)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  230 (384)
                      --.+                                              |                             
T Consensus       231 HSTI----------------------------------------------I-----------------------------  235 (364)
T KOG0290|consen  231 HSTI----------------------------------------------I-----------------------------  235 (364)
T ss_pred             cceE----------------------------------------------E-----------------------------
Confidence            1000                                              0                             


Q ss_pred             CCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC
Q psy4577         231 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPS-SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL  309 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~  309 (384)
                             .....-..+...++|+++.++++|+-..| ..|.|-|+|         ..+.|+..+++|.+.|+.++|.|..
T Consensus       236 -------YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR---------~P~tpva~L~~H~a~VNgIaWaPhS  299 (364)
T KOG0290|consen  236 -------YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR---------VPCTPVARLRNHQASVNGIAWAPHS  299 (364)
T ss_pred             -------ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec---------CCCcceehhhcCcccccceEecCCC
Confidence                   00001134567889999888888886554 569999996         4456888999999999999999987


Q ss_pred             CCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccc
Q psy4577         310 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEK  370 (384)
Q Consensus       310 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~  370 (384)
                      +..|+|||.|..+.+||+..... ....+++..+. -.+.|+.+.|+|..+--.++|..++
T Consensus       300 ~~hictaGDD~qaliWDl~q~~~-~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~kk  358 (364)
T KOG0290|consen  300 SSHICTAGDDCQALIWDLQQMPR-ENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGKK  358 (364)
T ss_pred             CceeeecCCcceEEEEecccccc-cCCCCchhhhh-ccceeeeeeecccCCCEEEEEecCe
Confidence            78999999999999999987642 12334555555 4567999999999998888886443

>KOG1009|consensus

Probab=99.85  E-value=1.3e-19  Score=146.24  Aligned_cols=311  Identities=15%  Similarity=0.253  Sum_probs=179.6

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .|.+...+.||||+.|..|+||-+.......     ....-+.+..+..|...|+++.|+|+|. +||||+++|.|.+|.
T Consensus        20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-----~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-----GDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFLWK   93 (434)
T ss_pred             EeccCcccceecccCccceeeeeeeecCCCC-----CceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEEEEE
Confidence            4566665579999999999999987532111     0123456678889999999999999999 999999999999998


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~  157 (384)
                      ....+......+.....+...        ....+.+|  ...++.++|+|++..++    |..+++||+....+......
T Consensus        94 ~~~~~~~~~d~e~~~~ke~w~--------v~k~lr~h--~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d  163 (434)
T KOG1009|consen   94 QGDVRIFDADTEADLNKEKWV--------VKKVLRGH--RDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD  163 (434)
T ss_pred             ecCcCCccccchhhhCccceE--------EEEEeccc--ccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc
Confidence            875322211111111111111        22344555  67899999999999887    88999999988777655444


Q ss_pred             ccccccceeeeeccCCCCCCCC--ccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGK--DYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      +...  ...+.|.|........  +.....+.+....       .+..+..    ..+.+......          .+  
T Consensus       164 h~~y--vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~-------~~~~~~~----~~m~~~~~~~~----------e~--  218 (434)
T KOG1009|consen  164 HEHY--VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ-------VIKRHGL----DIMPAKAFNER----------EG--  218 (434)
T ss_pred             cccc--cceeecchhhhhhhhhccCcccceeeeeeee-------eeeeeee----eEeeecccCCC----------Cc--
Confidence            4322  2234454433211110  0000000000000       0111100    00000000000          00  


Q ss_pred             eEEEEeecC----CceEEEEEcCCCCcEEEEEeC----C-----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEE
Q psy4577         236 EIEIKINHE----GEVNRARYMPQNPCVIATKTP----S-----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG  302 (384)
Q Consensus       236 ~~~~~~~~~----~~v~~v~~~p~~~~~l~s~s~----d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  302 (384)
                       .....-|.    .-...++|+|+|. +|++.+.    .     +..++|+..         ....|...+.+-..+...
T Consensus       219 -~s~rLfhDeTlksFFrRlsfTPdG~-llvtPag~~~~g~~~~~n~tYvfsrk---------~l~rP~~~lp~~~k~~la  287 (434)
T KOG1009|consen  219 -KSTRLFHDETLKSFFRRLSFTPDGS-LLVTPAGLFKVGGGVFRNTSYVFSRK---------DLKRPAARLPSPKKPALA  287 (434)
T ss_pred             -ceeeeeecCchhhhhhhcccCCCCc-EEEcccceeeeCCceeeceeEeeccc---------cccCceeecCCCCcceEE
Confidence             01111222    2246788999995 7776542    2     233556542         223455566666666667


Q ss_pred             EEeCC------------------CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec-cCCcEeEEEEecCCCccc
Q psy4577         303 LSWNP------------------SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG-HTAVVELELIERLTKKAD  363 (384)
Q Consensus       303 ~~~s~------------------~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~  363 (384)
                      +.|+|                  -+ -.+|.+. -..|++||.++..       |+..... |-..|++++|+++|..++
T Consensus       288 vr~~pVy~elrp~~~~~~~~~lpyr-lvfaiAt-~~svyvydtq~~~-------P~~~v~nihy~~iTDiaws~dg~~l~  358 (434)
T KOG1009|consen  288 VRFSPVYYELRPLSSEKFLFVLPYR-LVFAIAT-KNSVYVYDTQTLE-------PLAVVDNIHYSAITDIAWSDDGSVLL  358 (434)
T ss_pred             EEeeeeEEEeccccccccccccccc-eEEEEee-cceEEEecccccc-------ceEEEeeeeeeeecceeecCCCcEEE
Confidence            76665                  11 1344444 4599999999987       7776655 889999999999998544


Q ss_pred             -----ccccccccce
Q psy4577         364 -----PVCTLEKAKK  373 (384)
Q Consensus       364 -----~~c~~~~~~~  373 (384)
                           +.|+....++
T Consensus       359 vSS~DGyCS~vtfe~  373 (434)
T KOG1009|consen  359 VSSTDGFCSLVTFEP  373 (434)
T ss_pred             EeccCCceEEEEEcc
Confidence                 4466554443

>KOG4283|consensus

Probab=99.85  E-value=7.4e-20  Score=141.85  Aligned_cols=212  Identities=21%  Similarity=0.279  Sum_probs=146.6

Q ss_pred             cccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEE
Q psy4577          49 GGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ  128 (384)
Q Consensus        49 ~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  128 (384)
                      .-|.+.|++|...+....++++|+.||.|.+||++......+..   .+.+...+-...      -..+|  .-.|.++.
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~---li~k~~c~v~~~------h~~~H--ky~iss~~  108 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG---LIAKHKCIVAKQ------HENGH--KYAISSAI  108 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc---ceeheeeecccc------CCccc--eeeeeeeE
Confidence            45889999999988755577899999999999998753221111   111111100000      11123  44577899


Q ss_pred             EecCceeee-----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEE
Q psy4577         129 WLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIAS  203 (384)
Q Consensus       129 ~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  203 (384)
                      |.|-.+.++     |.++++||.++......                                                 
T Consensus       109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~-------------------------------------------------  139 (397)
T KOG4283|consen  109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD-------------------------------------------------  139 (397)
T ss_pred             EeeecCceeecccccceEEEeecccceeeEE-------------------------------------------------
Confidence            999877665     88899998765322110                                                 


Q ss_pred             eecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCC--CCcEEEEEeCCCcEEEEecCCCCCCC
Q psy4577         204 VQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQ--NPCVIATKTPSSDVLVFDYTKHPSKP  281 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~  281 (384)
                                                           ..-++.|.+-+++|-  ...++|+|..|-.|++.|+.      
T Consensus       140 -------------------------------------F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~------  176 (397)
T KOG4283|consen  140 -------------------------------------FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA------  176 (397)
T ss_pred             -------------------------------------eecCceeehhhcChhhhcceEEEEecCCCcEEEEecc------
Confidence                                                 011233455555552  23589999999999999997      


Q ss_pred             CCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCC--------CCccccceeeeeccCCcEeEE
Q psy4577         282 DPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPK--------ENRVIDAKTIFTGHTAVVELE  353 (384)
Q Consensus       282 ~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~--------~~~~~~~~~~~~~h~~~v~~~  353 (384)
                        ++.+.  .++.||.+.|.++.|+|..+..|+|||.||.|++||++....        ..+-++.+++-.+|.+.|+.+
T Consensus       177 --SGs~s--H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl  252 (397)
T KOG4283|consen  177 --SGSFS--HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL  252 (397)
T ss_pred             --CCcce--eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeee
Confidence              67654  489999999999999998878999999999999999987621        112222344445688999999


Q ss_pred             EEecCCCccccccc
Q psy4577         354 LIERLTKKADPVCT  367 (384)
Q Consensus       354 ~~sp~~~~~~~~c~  367 (384)
                      +|..++..+.++..
T Consensus       253 a~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  253 AWTSDARYLASCGT  266 (397)
T ss_pred             eecccchhhhhccC
Confidence            99999998887743

>KOG0274|consensus

Probab=99.85  E-value=6.9e-20  Score=162.17  Aligned_cols=222  Identities=22%  Similarity=0.255  Sum_probs=158.8

Q ss_pred             CCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCC
Q psy4577           7 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVE   86 (384)
Q Consensus         7 ~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~   86 (384)
                      +..+|++|+.|.+++|||..+              .++..++.||.+.|.++...+.   ++++||.|.+|++|+++++.
T Consensus       260 ~~~~lvsgS~D~t~rvWd~~s--------------g~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~  322 (537)
T KOG0274|consen  260 GGDKLVSGSTDKTERVWDCST--------------GECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGA  322 (537)
T ss_pred             CCCEEEEEecCCcEEeEecCC--------------CcEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcc
Confidence            456899999999999999876              5889999999999999987654   67789999999999998651


Q ss_pred             CccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceee--ecceeeeeccccccccceeecccccccc
Q psy4577          87 PFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRV--INEEYKIWKKNTPFLYDLVMTHALEWPS  164 (384)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~d~~v~~w~~~~~~~~~~~~~~~~~~~~  164 (384)
                                              ...++.+|  ..+|.++....+--..  .|++|++|+.....+...+.+|.....+
T Consensus       323 ------------------------~l~l~~~h--~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~s  376 (537)
T KOG0274|consen  323 ------------------------CLNLLRGH--TGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYS  376 (537)
T ss_pred             ------------------------eEEEeccc--cccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEE
Confidence                                    12234444  6678888888776443  3889999999999888888877554211


Q ss_pred             eeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc-eeEEEEeec
Q psy4577         165 LTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK-IEIEIKINH  243 (384)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~  243 (384)
                      +  .+.                                     .. ........|...+.|+    .... ..+..+.+|
T Consensus       377 l--~~~-------------------------------------~~-~~~~Sgs~D~~IkvWd----l~~~~~c~~tl~~h  412 (537)
T KOG0274|consen  377 L--IVD-------------------------------------SE-NRLLSGSLDTTIKVWD----LRTKRKCIHTLQGH  412 (537)
T ss_pred             E--Eec-------------------------------------Cc-ceEEeeeeccceEeec----CCchhhhhhhhcCC
Confidence            1  110                                     00 1111222222222221    1122 335556678


Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      ..-+.++.+.  + ++|++++.|++|++||..        ++.  .+..+.+ |...|..+++.  . ..+++++.||++
T Consensus       413 ~~~v~~l~~~--~-~~Lvs~~aD~~Ik~WD~~--------~~~--~~~~~~~~~~~~v~~l~~~--~-~~il~s~~~~~~  476 (537)
T KOG0274|consen  413 TSLVSSLLLR--D-NFLVSSSADGTIKLWDAE--------EGE--CLRTLEGRHVGGVSALALG--K-EEILCSSDDGSV  476 (537)
T ss_pred             cccccccccc--c-ceeEeccccccEEEeecc--------cCc--eeeeeccCCcccEEEeecC--c-ceEEEEecCCee
Confidence            8888666553  4 589999999999999986        343  4556777 67889999887  2 478999999999


Q ss_pred             EEEecCCCC
Q psy4577         323 CLWDINATP  331 (384)
Q Consensus       323 ~iwd~~~~~  331 (384)
                      ++||+++++
T Consensus       477 ~l~dl~~~~  485 (537)
T KOG0274|consen  477 KLWDLRSGT  485 (537)
T ss_pred             EEEecccCc
Confidence            999999998

>KOG0278|consensus

Probab=99.85  E-value=2.2e-20  Score=141.38  Aligned_cols=253  Identities=13%  Similarity=0.104  Sum_probs=176.9

Q ss_pred             CCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEccc
Q psy4577           5 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVC   84 (384)
Q Consensus         5 p~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~   84 (384)
                      |+| .+|++++.|+.=.+-+-.+              ..-+.++.||++.|.+...+.+.. ..|+++.|-+.++||.-+
T Consensus        27 p~g-~flisa~kd~~pmlr~g~t--------------gdwigtfeghkgavw~~~l~~na~-~aasaaadftakvw~a~t   90 (334)
T KOG0278|consen   27 PDG-YFLISASKDGKPMLRNGDT--------------GDWIGTFEGHKGAVWSATLNKNAT-RAASAAADFTAKVWDAVT   90 (334)
T ss_pred             CCc-eEEEEeccCCCchhccCCC--------------CCcEEeeeccCcceeeeecCchhh-hhhhhcccchhhhhhhhh
Confidence            456 4899999998776666554              366888999999999999998887 788999999999999877


Q ss_pred             CCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee-eccc
Q psy4577          85 VEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV-MTHA  159 (384)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~-~~~~  159 (384)
                      +..+                       ....    +..-|.+++|+.|..+++    +.-+|+++++.+...-.. .++.
T Consensus        91 gdel-----------------------hsf~----hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght  143 (334)
T KOG0278|consen   91 GDEL-----------------------HSFE----HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT  143 (334)
T ss_pred             hhhh-----------------------hhhh----hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence            6211                       0111    133477999999999888    455677777655432111 1111


Q ss_pred             ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE
Q psy4577         160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI  239 (384)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  239 (384)
                                                             -.|..+-+-..+..++...+|...+.|+...   +.  ...
T Consensus       144 ---------------------------------------g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT---gt--~v~  179 (334)
T KOG0278|consen  144 ---------------------------------------GGIRTVLWCHEDKCILSSADDKTVRLWDHRT---GT--EVQ  179 (334)
T ss_pred             ---------------------------------------CcceeEEEeccCceEEeeccCCceEEEEecc---Cc--EEE
Confidence                                                   1122233333344455556666666664311   12  233


Q ss_pred             EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      ....+..|+++.++++|. ++.+ ...+.|.+||...          ..++....- .-.|.+...+|+. ..++.|+.|
T Consensus       180 sL~~~s~VtSlEvs~dG~-ilTi-a~gssV~Fwdaks----------f~~lKs~k~-P~nV~SASL~P~k-~~fVaGged  245 (334)
T KOG0278|consen  180 SLEFNSPVTSLEVSQDGR-ILTI-AYGSSVKFWDAKS----------FGLLKSYKM-PCNVESASLHPKK-EFFVAGGED  245 (334)
T ss_pred             EEecCCCCcceeeccCCC-EEEE-ecCceeEEecccc----------ccceeeccC-ccccccccccCCC-ceEEecCcc
Confidence            335678899999999995 6555 5678899999852          223333332 2358899999998 799999999


Q ss_pred             CcEEEEecCCCCCCCccccceeee-eccCCcEeEEEEecCCCccccc
Q psy4577         320 HTICLWDINATPKENRVIDAKTIF-TGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       320 g~i~iwd~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      ..++.||..++.       .+..+ ++|-++|.||.|+|+|..-++.
T Consensus       246 ~~~~kfDy~Tge-------Ei~~~nkgh~gpVhcVrFSPdGE~yAsG  285 (334)
T KOG0278|consen  246 FKVYKFDYNTGE-------EIGSYNKGHFGPVHCVRFSPDGELYASG  285 (334)
T ss_pred             eEEEEEeccCCc-------eeeecccCCCCceEEEEECCCCceeecc
Confidence            999999999998       66665 8999999999999999865544

>KOG0643|consensus

Probab=99.84  E-value=1.8e-19  Score=137.81  Aligned_cols=201  Identities=15%  Similarity=0.162  Sum_probs=156.5

Q ss_pred             EecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeE
Q psy4577          47 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLT  126 (384)
Q Consensus        47 ~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  126 (384)
                      .++||..+++.+.|+.+|. ||+||+.|.+..||-..+++.                        ...+.||  .+.|++
T Consensus         5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGer------------------------lGty~GH--tGavW~   57 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGER------------------------LGTYDGH--TGAVWC   57 (327)
T ss_pred             ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCce------------------------eeeecCC--CceEEE
Confidence            3579999999999999999 999999999999997655421                        1355577  778999


Q ss_pred             EEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEE
Q psy4577         127 AQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIA  202 (384)
Q Consensus       127 ~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  202 (384)
                      +...-+.+.++    |.++++||+.++++....                                               
T Consensus        58 ~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~-----------------------------------------------   90 (327)
T KOG0643|consen   58 CDIDWDSKHLITGSADQTAKLWDVETGKQLATW-----------------------------------------------   90 (327)
T ss_pred             EEecCCcceeeeccccceeEEEEcCCCcEEEEe-----------------------------------------------
Confidence            99988888777    888999998765542110                                               


Q ss_pred             EeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeC-----CCcEEEEecCCC
Q psy4577         203 SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTP-----SSDVLVFDYTKH  277 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~-----dg~i~iwd~~~~  277 (384)
                                                             ....+|..+.|++.|. +++...+     .+.|.++|++..
T Consensus        91 ---------------------------------------k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~  130 (327)
T KOG0643|consen   91 ---------------------------------------KTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDD  130 (327)
T ss_pred             ---------------------------------------ecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCC
Confidence                                                   1234688899999884 5554443     367999999854


Q ss_pred             CCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEec
Q psy4577         278 PSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIER  357 (384)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp  357 (384)
                      +..   ....+|+..+..+...++.+-|.|-+ .+|++|..||.|.+||++++.+      .+..-+.|+..|++++++|
T Consensus       131 ~~~---~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~------~v~s~~~h~~~Ind~q~s~  200 (327)
T KOG0643|consen  131 SSD---IDSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKE------LVDSDEEHSSKINDLQFSR  200 (327)
T ss_pred             hhh---hcccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCce------eeechhhhccccccccccC
Confidence            432   23445778888899999999999998 6999999999999999999863      5666677999999999999


Q ss_pred             CCCccccccccccc
Q psy4577         358 LTKKADPVCTLEKA  371 (384)
Q Consensus       358 ~~~~~~~~c~~~~~  371 (384)
                      |...-.+.|.....
T Consensus       201 d~T~FiT~s~Dtta  214 (327)
T KOG0643|consen  201 DRTYFITGSKDTTA  214 (327)
T ss_pred             CcceEEecccCccc
Confidence            99977766654443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.84  E-value=1.9e-18  Score=146.97  Aligned_cols=254  Identities=9%  Similarity=0.044  Sum_probs=150.4

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCc
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPF   88 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~   88 (384)
                      .++++++.|+.|++||+.+              .+.+..+.+|. .+.+++|+|++..++++++.|+.|++||+.+++. 
T Consensus         2 ~~~~s~~~d~~v~~~d~~t--------------~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-   65 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTAT--------------LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-   65 (300)
T ss_pred             cEEEEecCCCEEEEEECCC--------------CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-
Confidence            3789999999999999875              24455556554 4788999999985556778899999999977421 


Q ss_pred             cchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeeccccccc
Q psy4577          89 DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWP  163 (384)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~  163 (384)
                                  ...+.           .   ...+..++|+|+++.++     ++.+++||+.+......+..   ...
T Consensus        66 ------------~~~~~-----------~---~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~  116 (300)
T TIGR03866        66 ------------IGTLP-----------S---GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV---GVE  116 (300)
T ss_pred             ------------EEecc-----------C---CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC---CCC
Confidence                        11110           0   11234678999998664     68899999876443222111   111


Q ss_pred             ceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeec
Q psy4577         164 SLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINH  243 (384)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  243 (384)
                      ...+.+.|+..                                     .+.....+.....+  +....... .. ....
T Consensus       117 ~~~~~~~~dg~-------------------------------------~l~~~~~~~~~~~~--~d~~~~~~-~~-~~~~  155 (300)
T TIGR03866       117 PEGMAVSPDGK-------------------------------------IVVNTSETTNMAHF--IDTKTYEI-VD-NVLV  155 (300)
T ss_pred             cceEEECCCCC-------------------------------------EEEEEecCCCeEEE--EeCCCCeE-EE-EEEc
Confidence            12233333321                                     11111110000000  00000111 11 1122


Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC---CCC--ceEEEEeCCCCCCe-EEEee
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG---HQK--EGYGLSWNPSLNGY-LLSAS  317 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---h~~--~i~~~~~s~~~~~~-l~s~s  317 (384)
                      .....+++|+|+++.+++++..++.|++||++        .+.......+..   +..  ....++|+|++ ++ +++.+
T Consensus       156 ~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg-~~~~~~~~  226 (300)
T TIGR03866       156 DQRPRFAEFTADGKELWVSSEIGGTVSVIDVA--------TRKVIKKITFEIPGVHPEAVQPVGIKLTKDG-KTAFVALG  226 (300)
T ss_pred             CCCccEEEECCCCCEEEEEcCCCCEEEEEEcC--------cceeeeeeeecccccccccCCccceEECCCC-CEEEEEcC
Confidence            34567899999997455666679999999996        232211111111   111  23578999998 55 45556


Q ss_pred             CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         318 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      .++.|.+||.++++       .+..+. +...+.+++|+|+++.+.+.
T Consensus       227 ~~~~i~v~d~~~~~-------~~~~~~-~~~~~~~~~~~~~g~~l~~~  266 (300)
T TIGR03866       227 PANRVAVVDAKTYE-------VLDYLL-VGQRVWQLAFTPDEKYLLTT  266 (300)
T ss_pred             CCCeEEEEECCCCc-------EEEEEE-eCCCcceEEECCCCCEEEEE
Confidence            67889999998876       554443 44579999999999976543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106|consensus

Probab=99.84  E-value=7e-18  Score=140.12  Aligned_cols=248  Identities=13%  Similarity=0.236  Sum_probs=154.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|.++|+  ++||.++|.|.||+..+              .+..+....|.+.|.+|+.-.+|. +| ||+.|+.|..|
T Consensus       252 v~F~engd--viTgDS~G~i~Iw~~~~--------------~~~~k~~~aH~ggv~~L~~lr~Gt-ll-SGgKDRki~~W  313 (626)
T KOG2106|consen  252 VTFLENGD--VITGDSGGNILIWSKGT--------------NRISKQVHAHDGGVFSLCMLRDGT-LL-SGGKDRKIILW  313 (626)
T ss_pred             EEEcCCCC--EEeecCCceEEEEeCCC--------------ceEEeEeeecCCceEEEEEecCcc-Ee-ecCccceEEec
Confidence            47889987  89999999999999865              244444449999999999999999 54 89999999999


Q ss_pred             EcccCCC----cc-chhheeee-e--eeEEE-------ecc--CCcccccceeeeeeccCeeEEEEecCceeee----cc
Q psy4577          81 SVVCVEP----FD-DAVEERVI-N--EEYKI-------WKK--NTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NE  139 (384)
Q Consensus        81 d~~~~~~----~~-~~~~~~~~-~--~~~~~-------~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~  139 (384)
                      |-.-.+.    ++ +....+.+ .  ..+.+       ...  +.. ......+|  .+..+.++-+|+...++    |+
T Consensus       314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~-f~~~v~gh--~delwgla~hps~~q~~T~gqdk  390 (626)
T KOG2106|consen  314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG-FTLTVQGH--GDELWGLATHPSKNQLLTCGQDK  390 (626)
T ss_pred             cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC-ceEEEEec--ccceeeEEcCCChhheeeccCcc
Confidence            9322210    00 00000000 0  00000       000  000 11133345  55788899999988877    99


Q ss_pred             eeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccccc
Q psy4577         140 EYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYD  219 (384)
Q Consensus       140 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d  219 (384)
                      .+++|+- ....+    +...+.|+.+..+.|.+           .+.+|+..+    ...+....              
T Consensus       391 ~v~lW~~-~k~~w----t~~~~d~~~~~~fhpsg-----------~va~Gt~~G----~w~V~d~e--------------  436 (626)
T KOG2106|consen  391 HVRLWND-HKLEW----TKIIEDPAECADFHPSG-----------VVAVGTATG----RWFVLDTE--------------  436 (626)
T ss_pred             eEEEccC-CceeE----EEEecCceeEeeccCcc-----------eEEEeeccc----eEEEEecc--------------
Confidence            9999993 22222    22233344555554443           223333221    01111111              


Q ss_pred             CcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCc
Q psy4577         220 TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE  299 (384)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  299 (384)
                                   .+..+..... +.++++++|+|+|. +||.|+.|+.|+||.+..       .+.. ....-..|..+
T Consensus       437 -------------~~~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~-------~g~~-y~r~~k~~gs~  493 (626)
T KOG2106|consen  437 -------------TQDLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSA-------NGRK-YSRVGKCSGSP  493 (626)
T ss_pred             -------------cceeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEECC-------CCcE-EEEeeeecCce
Confidence                         0111222223 78899999999995 999999999999999863       2221 11111223479


Q ss_pred             eEEEEeCCCCCCeEEEeeCCCcEEEEec
Q psy4577         300 GYGLSWNPSLNGYLLSASDDHTICLWDI  327 (384)
Q Consensus       300 i~~~~~s~~~~~~l~s~s~Dg~i~iwd~  327 (384)
                      |+.+.||+|+ ++|.+-+.|-.|..|..
T Consensus       494 ithLDwS~Ds-~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  494 ITHLDWSSDS-QFLVSNSGDYEILYWKP  520 (626)
T ss_pred             eEEeeecCCC-ceEEeccCceEEEEEcc
Confidence            9999999998 79999999999999944

>KOG1446|consensus

Probab=99.84  E-value=8.9e-19  Score=137.26  Aligned_cols=222  Identities=14%  Similarity=0.192  Sum_probs=142.0

Q ss_pred             EEEeeC--CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCc
Q psy4577          11 LASSGT--DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPF   88 (384)
Q Consensus        11 lat~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~   88 (384)
                      +..++.  |.+|+.-++.+              .+.++.+.||...|++|+.+|-+. .++|+|.|++||+||++..+..
T Consensus        71 ~i~sStk~d~tIryLsl~d--------------NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cq  135 (311)
T KOG1446|consen   71 VIHSSTKEDDTIRYLSLHD--------------NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQ  135 (311)
T ss_pred             EEEccCCCCCceEEEEeec--------------CceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCc
Confidence            444444  88999999987              478899999999999999999998 6679999999999999853111


Q ss_pred             cchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccc--cceeecccccc
Q psy4577          89 DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFL--YDLVMTHALEW  162 (384)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~--~~~~~~~~~~~  162 (384)
                                   .+...               ..-..++|.|.|-.++    .+.|+++|++.-..  +..+.-.    
T Consensus       136 -------------g~l~~---------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~----  183 (311)
T KOG1446|consen  136 -------------GLLNL---------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT----  183 (311)
T ss_pred             -------------eEEec---------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC----
Confidence                         11111               1123588999998877    34789988754211  1111000    


Q ss_pred             cceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEee
Q psy4577         163 PSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKIN  242 (384)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  242 (384)
                                                      .........+.++++++.+++..........+.+   .|.. ......
T Consensus       184 --------------------------------~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf---~G~~-~~tfs~  227 (311)
T KOG1446|consen  184 --------------------------------DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF---DGTV-KSTFSG  227 (311)
T ss_pred             --------------------------------CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc---CCcE-eeeEee
Confidence                                            0011123444455555544444333222222111   1111 222222


Q ss_pred             cCC---ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCCCCCeEEEeeC
Q psy4577         243 HEG---EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       243 ~~~---~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      +..   .-.+.+|.|+++ ++++|+.||+|.+|+++        ++.  .+..+.+ +.+++.++.|+|.- -.++|++.
T Consensus       228 ~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~--------tg~--~v~~~~~~~~~~~~~~~fnP~~-~mf~sa~s  295 (311)
T KOG1446|consen  228 YPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLE--------TGK--KVAVLRGPNGGPVSCVRFNPRY-AMFVSASS  295 (311)
T ss_pred             ccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcC--------CCc--EeeEecCCCCCCccccccCCce-eeeeecCc
Confidence            221   225788999996 99999999999999996        443  4557777 78899999999986 57777654


Q ss_pred             CCcEEEEecCC
Q psy4577         319 DHTICLWDINA  329 (384)
Q Consensus       319 Dg~i~iwd~~~  329 (384)
                        .+.+|=...
T Consensus       296 --~l~fw~p~~  304 (311)
T KOG1446|consen  296 --NLVFWLPDE  304 (311)
T ss_pred             --eEEEEeccc
Confidence              788886553

>KOG1036|consensus

Probab=99.84  E-value=3e-19  Score=139.26  Aligned_cols=223  Identities=13%  Similarity=0.082  Sum_probs=140.8

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      +|.++.  -+++|+.||.|+++|+.+               .....+..|..+|.||.+++... .+++||-|++|++||
T Consensus        61 ~F~d~~--~~~~G~~dg~vr~~Dln~---------------~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD  122 (323)
T KOG1036|consen   61 AFADES--TIVTGGLDGQVRRYDLNT---------------GNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWD  122 (323)
T ss_pred             eccCCc--eEEEeccCceEEEEEecC---------------CcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEe
Confidence            566644  489999999999999987               22334467999999999998766 677999999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee--cceeeeeccccccccceeeccc
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI--NEEYKIWKKNTPFLYDLVMTHA  159 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--d~~v~~w~~~~~~~~~~~~~~~  159 (384)
                      .......             ...+              ....|.++....+.-.+.  +..+.+||+++....-......
T Consensus       123 ~R~~~~~-------------~~~d--------------~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~  175 (323)
T KOG1036|consen  123 PRNKVVV-------------GTFD--------------QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESS  175 (323)
T ss_pred             ccccccc-------------cccc--------------cCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhcccc
Confidence            9752110             0000              022355554443322221  8899999998766654444444


Q ss_pred             ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE
Q psy4577         160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI  239 (384)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  239 (384)
                      ++.+..++...|...+                       ..+.++.     +++.+..+|....         .......
T Consensus       176 lkyqtR~v~~~pn~eG-----------------------y~~sSie-----GRVavE~~d~s~~---------~~skkya  218 (323)
T KOG1036|consen  176 LKYQTRCVALVPNGEG-----------------------YVVSSIE-----GRVAVEYFDDSEE---------AQSKKYA  218 (323)
T ss_pred             ceeEEEEEEEecCCCc-----------------------eEEEeec-----ceEEEEccCCchH---------Hhhhcee
Confidence            5544555555542210                       1111111     2222222222200         0000111


Q ss_pred             EeecC---------CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCC
Q psy4577         240 KINHE---------GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLN  310 (384)
Q Consensus       240 ~~~~~---------~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~  310 (384)
                      +..|.         -+|++++|+|-.+ .||||+.||.|.+||+.          ..+.+..+......|.+++|+.+| 
T Consensus       219 FkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~----------~rKrl~q~~~~~~SI~slsfs~dG-  286 (323)
T KOG1036|consen  219 FKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLF----------NRKRLKQLAKYETSISSLSFSMDG-  286 (323)
T ss_pred             EEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCc----------chhhhhhccCCCCceEEEEeccCC-
Confidence            22222         4799999999874 89999999999999984          334566777777789999999999 


Q ss_pred             CeEEEeeC
Q psy4577         311 GYLLSASD  318 (384)
Q Consensus       311 ~~l~s~s~  318 (384)
                      ..||.++.
T Consensus       287 ~~LAia~s  294 (323)
T KOG1036|consen  287 SLLAIASS  294 (323)
T ss_pred             CeEEEEec
Confidence            59998874

>KOG1274|consensus

Probab=99.84  E-value=5.2e-19  Score=156.71  Aligned_cols=242  Identities=15%  Similarity=0.225  Sum_probs=158.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|.|+|+ .|+|++.||.|++|+.....+         . |+.+.   -|...|.+++-..+   .|++|+.+++|.++
T Consensus        19 i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e---------~-P~ti~---~~g~~v~~ia~~s~---~f~~~s~~~tv~~y   81 (933)
T KOG1274|consen   19 ICYDPDGE-FICTCGSDGDIRKWKTNSDEE---------E-PETID---ISGELVSSIACYSN---HFLTGSEQNTVLRY   81 (933)
T ss_pred             EEEcCCCC-EEEEecCCCceEEeecCCccc---------C-Cchhh---ccCceeEEEeeccc---ceEEeeccceEEEe
Confidence            47899998 799999999999998764211         1 12111   14455666654332   45577777777777


Q ss_pred             EcccCCCc---c---ch------------hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c
Q psy4577          81 SVVCVEPF---D---DA------------VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N  138 (384)
Q Consensus        81 d~~~~~~~---~---~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d  138 (384)
                      .+..++..   .   -.            ..-...+..+++.+.........+.+|  ..+|.++.|+|++..++    |
T Consensus        82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh--~apVl~l~~~p~~~fLAvss~d  159 (933)
T KOG1274|consen   82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH--DAPVLQLSYDPKGNFLAVSSCD  159 (933)
T ss_pred             eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc--CCceeeeeEcCCCCEEEEEecC
Confidence            77655211   0   00            001112334555544444343456667  88999999999999988    9


Q ss_pred             ceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccc
Q psy4577         139 EEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNY  218 (384)
Q Consensus       139 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  218 (384)
                      |+|++|++....+..++......                                                         
T Consensus       160 G~v~iw~~~~~~~~~tl~~v~k~---------------------------------------------------------  182 (933)
T KOG1274|consen  160 GKVQIWDLQDGILSKTLTGVDKD---------------------------------------------------------  182 (933)
T ss_pred             ceEEEEEcccchhhhhcccCCcc---------------------------------------------------------
Confidence            99999999766553332111000                                                         


Q ss_pred             cCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee--cCC
Q psy4577         219 DTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL--RGH  296 (384)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~h  296 (384)
                                          ........+..++|+|++. .||..+.|+.|.+|+..        .  ..+...+  ..|
T Consensus       183 --------------------n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~--------~--we~~f~Lr~~~~  231 (933)
T KOG1274|consen  183 --------------------NEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRK--------G--WELQFKLRDKLS  231 (933)
T ss_pred             --------------------ccccccceeeeeeecCCCC-eEEeeccCCeEEEEccC--------C--ceeheeeccccc
Confidence                                0000134577899999976 55666779999999975        2  2233333  334


Q ss_pred             CCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577         297 QKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK  361 (384)
Q Consensus       297 ~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  361 (384)
                      ...+..++|+|.| .|||+++.||.|.|||+++-.       .    ......|.+++|.|+++.
T Consensus       232 ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~-------~----~~~~~~Vc~~aw~p~~n~  284 (933)
T KOG1274|consen  232 SSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHE-------R----HEFKRAVCCEAWKPNANA  284 (933)
T ss_pred             ccceEEEEEcCCC-cEEeeeccCCcEEEEecccch-------h----ccccceeEEEecCCCCCe
Confidence            5559999999999 799999999999999999743       1    112467999999998874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.83  E-value=1.2e-17  Score=141.98  Aligned_cols=252  Identities=14%  Similarity=0.126  Sum_probs=147.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+++.++++++.|+.|++||..+              .+....+..+. .+..++|+|+++.++++++.|+.+++|
T Consensus        36 l~~~~dg~~l~~~~~~~~~v~~~d~~~--------------~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~  100 (300)
T TIGR03866        36 ITLSKDGKLLYVCASDSDTIQVIDLAT--------------GEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVI  100 (300)
T ss_pred             eEECCCCCEEEEEECCCCeEEEEECCC--------------CcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEE
Confidence            468999975557788899999999875              23444444443 357889999999555666778999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c-ceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N-EEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d-~~v~~w~~~~~~~~~~~  155 (384)
                      |+.+.+.             +.....              ...+.+++|+|++..++    + ..+..|+..+.......
T Consensus       101 d~~~~~~-------------~~~~~~--------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~  153 (300)
T TIGR03866       101 DIETRKV-------------LAEIPV--------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV  153 (300)
T ss_pred             ECCCCeE-------------EeEeeC--------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence            9976411             111100              12345799999998876    2 23555666543332211


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      ...   .....+.+.++..          .+.+...   ..+.+.++.+.                .          +..
T Consensus       154 ~~~---~~~~~~~~s~dg~----------~l~~~~~---~~~~v~i~d~~----------------~----------~~~  191 (300)
T TIGR03866       154 LVD---QRPRFAEFTADGK----------ELWVSSE---IGGTVSVIDVA----------------T----------RKV  191 (300)
T ss_pred             EcC---CCccEEEECCCCC----------EEEEEcC---CCCEEEEEEcC----------------c----------cee
Confidence            100   0011223332221          1111100   01112222211                0          000


Q ss_pred             eEEEEe-----ec--CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCC
Q psy4577         236 EIEIKI-----NH--EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPS  308 (384)
Q Consensus       236 ~~~~~~-----~~--~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~  308 (384)
                       .....     .+  ......++|+|+++.++++.+.++.|.+||++        ++..  ...+ .+...+.+++|+|+
T Consensus       192 -~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~--------~~~~--~~~~-~~~~~~~~~~~~~~  259 (300)
T TIGR03866       192 -IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK--------TYEV--LDYL-LVGQRVWQLAFTPD  259 (300)
T ss_pred             -eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC--------CCcE--EEEE-EeCCCcceEEECCC
Confidence             00000     01  11234688999997545555667789999985        3322  2222 23457899999999


Q ss_pred             CCCeEEEe-eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEec
Q psy4577         309 LNGYLLSA-SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIER  357 (384)
Q Consensus       309 ~~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp  357 (384)
                      | .+|+++ +.+|.|++||+++++       ++..++.. ...+.++++|
T Consensus       260 g-~~l~~~~~~~~~i~v~d~~~~~-------~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       260 E-KYLLTTNGVSNDVSVIDVAALK-------VIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             C-CEEEEEcCCCCeEEEEECCCCc-------EEEEEEcc-cccceeEeCC
Confidence            9 577765 568999999999998       88888755 4458888876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321|consensus

Probab=99.83  E-value=1.9e-19  Score=153.28  Aligned_cols=261  Identities=17%  Similarity=0.163  Sum_probs=160.6

Q ss_pred             CCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEccc
Q psy4577           5 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVC   84 (384)
Q Consensus         5 p~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~   84 (384)
                      |..+++||.+-.||.|.++|.+.....        .....+.....|...|.++.|-| |..+|++++.|.++++||+..
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~fr--------~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVFR--------LEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhcc--------hhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence            345679999999999999998752211        00123455678999999999999 666899999999999999987


Q ss_pred             CCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeeccc
Q psy4577          85 VEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHA  159 (384)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~  159 (384)
                      .+.                   .+.   ....||  ...|.+++|.|....++     |+.+.|||++....-.+...-.
T Consensus       132 s~l-------------------~G~---~~~~GH--~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~  187 (720)
T KOG0321|consen  132 SRL-------------------VGG---RLNLGH--TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDN  187 (720)
T ss_pred             cee-------------------ecc---eeeccc--ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhh
Confidence            521                   111   134466  77899999999998776     9999999997654211100000


Q ss_pred             ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE
Q psy4577         160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI  239 (384)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  239 (384)
                          +                      ..+.+.... .                               ...........
T Consensus       188 ----~----------------------~~~~~n~~p-t-------------------------------pskp~~kr~~k  209 (720)
T KOG0321|consen  188 ----R----------------------IYGRHNTAP-T-------------------------------PSKPLKKRIRK  209 (720)
T ss_pred             ----h----------------------hhccccCCC-C-------------------------------CCchhhccccc
Confidence                0                      000000000 0                               00000000112


Q ss_pred             EeecCCceEE---EEEcCCCCcEEEEEeC-CCcEEEEecCCCCCCCCCCCCccceeeecCC---CCceEEEEeCCCCCCe
Q psy4577         240 KINHEGEVNR---ARYMPQNPCVIATKTP-SSDVLVFDYTKHPSKPDPNGECHPDLRLRGH---QKEGYGLSWNPSLNGY  312 (384)
Q Consensus       240 ~~~~~~~v~~---v~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h---~~~i~~~~~s~~~~~~  312 (384)
                      ..++...|.+   +.+..|. ..||+++. |+.|+|||++......  .+.......+..|   .-.++++.....|+++
T Consensus       210 ~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~--r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L  286 (720)
T KOG0321|consen  210 WKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAY--RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL  286 (720)
T ss_pred             cccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeeccccccc--ccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence            2244444444   4555666 48888887 9999999998654321  1122222333444   2367888888888655


Q ss_pred             EEEeeCCCcEEEEecCCCCCCCccccceeeeeccCC--cEeEEEEecCCCccccc
Q psy4577         313 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTA--VVELELIERLTKKADPV  365 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~~  365 (384)
                      +|+|. |++|++||+.+....     ++..+.++..  .-..-..+|++..+.+.
T Consensus       287 ~AsCt-D~sIy~ynm~s~s~s-----P~~~~sg~~~~sf~vks~lSpd~~~l~Sg  335 (720)
T KOG0321|consen  287 FASCT-DNSIYFYNMRSLSIS-----PVAEFSGKLNSSFYVKSELSPDDCSLLSG  335 (720)
T ss_pred             EEEec-CCcEEEEeccccCcC-----chhhccCcccceeeeeeecCCCCceEecc
Confidence            55555 999999999986533     6666665432  12234457777766554

>KOG0647|consensus

Probab=99.82  E-value=6.2e-19  Score=137.12  Aligned_cols=225  Identities=16%  Similarity=0.218  Sum_probs=134.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCC-cEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~-~~l~s~s~D~~i~v   79 (384)
                      ++|+.||. .+++|+.|+++++||+..               ........|.++|.++.|-+... .+|+|||-|++||.
T Consensus        78 v~Wsddgs-kVf~g~~Dk~~k~wDL~S---------------~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKf  141 (347)
T KOG0647|consen   78 VCWSDDGS-KVFSGGCDKQAKLWDLAS---------------GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKF  141 (347)
T ss_pred             EEEccCCc-eEEeeccCCceEEEEccC---------------CCeeeeeecccceeEEEEecCCCcceeEecccccceee
Confidence            47999996 799999999999999987               23445568999999999976543 26899999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee--cceeeeeccccc-cccceee
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI--NEEYKIWKKNTP-FLYDLVM  156 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--d~~v~~w~~~~~-~~~~~~~  156 (384)
                      ||++....+..             .              ...+.++++.....--.++  +..+.++++.++ ..+.. .
T Consensus       142 WD~R~~~pv~t-------------~--------------~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~-~  193 (347)
T KOG0647|consen  142 WDTRSSNPVAT-------------L--------------QLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKR-I  193 (347)
T ss_pred             cccCCCCeeee-------------e--------------eccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhh-h
Confidence            99976421110             0              0122333333222222222  778888887544 33322 2


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      ...+.+...++...++...-          .+|+-    +....|..+.              ...        ...   
T Consensus       194 ~SpLk~Q~R~va~f~d~~~~----------alGsi----EGrv~iq~id--------------~~~--------~~~---  234 (347)
T KOG0647|consen  194 ESPLKWQTRCVACFQDKDGF----------ALGSI----EGRVAIQYID--------------DPN--------PKD---  234 (347)
T ss_pred             cCcccceeeEEEEEecCCce----------Eeeee----cceEEEEecC--------------CCC--------ccC---
Confidence            22244433344333332210          11111    1111111111              100        000   


Q ss_pred             EEEEeecC---------CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC
Q psy4577         237 IEIKINHE---------GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP  307 (384)
Q Consensus       237 ~~~~~~~~---------~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~  307 (384)
                      -..+..|.         -.|++|+|+|.-. .|+|++.||+..+||-.          ....+.+...|..+|++.+|+.
T Consensus       235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkd----------ar~kLk~s~~~~qpItcc~fn~  303 (347)
T KOG0647|consen  235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKD----------ARTKLKTSETHPQPITCCSFNR  303 (347)
T ss_pred             ceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecch----------hhhhhhccCcCCCccceeEecC
Confidence            11111222         3588999999874 89999999999999964          2234556678999999999999


Q ss_pred             CCCCeEEEeeCC
Q psy4577         308 SLNGYLLSASDD  319 (384)
Q Consensus       308 ~~~~~l~s~s~D  319 (384)
                      +|..+..+.|.|
T Consensus       304 ~G~ifaYA~gYD  315 (347)
T KOG0647|consen  304 NGSIFAYALGYD  315 (347)
T ss_pred             CCCEEEEEeecc
Confidence            995344455555

>KOG1539|consensus

Probab=99.82  E-value=3.5e-18  Score=149.98  Aligned_cols=307  Identities=12%  Similarity=0.167  Sum_probs=191.0

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCcc
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFD   89 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~   89 (384)
                      -++.|+.+|.++||++++              .+.++++.++.+.|+++.=+|-=. .+|.|..+|+|.++++...+.  
T Consensus       174 KIvvGs~~G~lql~Nvrt--------------~K~v~~f~~~~s~IT~ieqsPaLD-VVaiG~~~G~ViifNlK~dki--  236 (910)
T KOG1539|consen  174 KIVVGSSQGRLQLWNVRT--------------GKVVYTFQEFFSRITAIEQSPALD-VVAIGLENGTVIIFNLKFDKI--  236 (910)
T ss_pred             eEEEeecCCcEEEEEecc--------------CcEEEEecccccceeEeccCCcce-EEEEeccCceEEEEEcccCcE--
Confidence            478899999999999998              588999999999999999999877 899999999999999977521  


Q ss_pred             chhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceee-ccccccc
Q psy4577          90 DAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVM-THALEWP  163 (384)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~-~~~~~~~  163 (384)
                                 +..++..             .+.|.+++|..||..++     .|.+.+||+...++..... .|...  
T Consensus       237 -----------l~sFk~d-------------~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~s--  290 (910)
T KOG1539|consen  237 -----------LMSFKQD-------------WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGS--  290 (910)
T ss_pred             -----------EEEEEcc-------------ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCC--
Confidence                       1111111             36799999999998776     6889999998876654433 22111  


Q ss_pred             ceeeeeccCCC--CCCCCccceeEEEEeeecc------------CCCCeEEEE--------Eeec--------------C
Q psy4577         164 SLTAQWLPDVT--RPEGKDYSIHRLILGTHTS------------DEQNHLLIA--------SVQL--------------P  207 (384)
Q Consensus       164 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~--------~~~~--------------~  207 (384)
                      .....+.+...  .....+......+..+..+            ..+-++...        +..-              +
T Consensus       291 v~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~  370 (910)
T KOG1539|consen  291 VTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQS  370 (910)
T ss_pred             cccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHh
Confidence            11122222221  2222233333222221110            001111111        0000              0


Q ss_pred             ---------CCCcccc-------------ccccc-CcCCCCCC------------ccCC----CCceeEE--EEeecCCc
Q psy4577         208 ---------NEDAQFD-------------ASNYD-TDKGDFGG------------FGSV----SGKIEIE--IKINHEGE  246 (384)
Q Consensus       208 ---------~~~~~~~-------------~~~~d-~~~~~~~~------------~~~~----~~~~~~~--~~~~~~~~  246 (384)
                               ...+...             ...++ .....|..            .|..    .|...+.  ........
T Consensus       371 ~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~  450 (910)
T KOG1539|consen  371 QELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDIN  450 (910)
T ss_pred             HhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcc
Confidence                     0000000             00000 00011110            0000    0111000  00112367


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee---cCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         247 VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL---RGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      +++++.++.| ++.+.|...|.|-+|++.        +|..  ...+   ..|.++|++++....+ +.++|++.||-++
T Consensus       451 ~~av~vs~CG-NF~~IG~S~G~Id~fNmQ--------SGi~--r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilk  518 (910)
T KOG1539|consen  451 ATAVCVSFCG-NFVFIGYSKGTIDRFNMQ--------SGIH--RKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILK  518 (910)
T ss_pred             eEEEEEeccC-ceEEEeccCCeEEEEEcc--------cCee--ecccccCccccCceeEEEecCCC-ceEEEccCcceEE
Confidence            8899999999 699999999999999996        4433  2344   5799999999999987 7999999999999


Q ss_pred             EEecCCCCCCCc----------------------------------cccceeeeeccCCcEeEEEEecCCCccccccccc
Q psy4577         324 LWDINATPKENR----------------------------------VIDAKTIFTGHTAVVELELIERLTKKADPVCTLE  369 (384)
Q Consensus       324 iwd~~~~~~~~~----------------------------------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~  369 (384)
                      +||.+.......                                  .-+.++.|.||+..|++++|||||+.+.+.|...
T Consensus       519 fw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~  598 (910)
T KOG1539|consen  519 FWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS  598 (910)
T ss_pred             EEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC
Confidence            999987631000                                  0013566779999999999999999888887654


Q ss_pred             cc
Q psy4577         370 KA  371 (384)
Q Consensus       370 ~~  371 (384)
                      ..
T Consensus       599 tI  600 (910)
T KOG1539|consen  599 TI  600 (910)
T ss_pred             cE
Confidence            43

>KOG0299|consensus

Probab=99.82  E-value=5e-19  Score=145.09  Aligned_cols=244  Identities=16%  Similarity=0.184  Sum_probs=150.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++.|||++ +||+|+.|..|.||+..+              .+.+..+.+|.+.|.+++|...-. -|+++|.|++|++|
T Consensus       208 ~avS~Dgk-ylatgg~d~~v~Iw~~~t--------------~ehv~~~~ghr~~V~~L~fr~gt~-~lys~s~Drsvkvw  271 (479)
T KOG0299|consen  208 LAVSSDGK-YLATGGRDRHVQIWDCDT--------------LEHVKVFKGHRGAVSSLAFRKGTS-ELYSASADRSVKVW  271 (479)
T ss_pred             EEEcCCCc-EEEecCCCceEEEecCcc--------------cchhhcccccccceeeeeeecCcc-ceeeeecCCceEEE
Confidence            46789997 899999999999999987              466777899999999999986555 56799999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      +++...                        ...++.||  ++.|.++.-+.-++.+-    |.++++|++..... .++.
T Consensus       272 ~~~~~s------------------------~vetlyGH--qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifr  324 (479)
T KOG0299|consen  272 SIDQLS------------------------YVETLYGH--QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFR  324 (479)
T ss_pred             ehhHhH------------------------HHHHHhCC--ccceeeechhcccceEEeccccceeEEEeccccce-eeee
Confidence            997631                        12344566  66777777776665554    89999999944322 1222


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+.....|  +.+..+.           .++.|+.    ...+.++++.--   +-+.+.  .          ...+..+
T Consensus       325 g~~~sidc--v~~In~~-----------HfvsGSd----nG~IaLWs~~KK---kplf~~--~----------~AHgv~~  372 (479)
T KOG0299|consen  325 GGEGSIDC--VAFINDE-----------HFVSGSD----NGSIALWSLLKK---KPLFTS--R----------LAHGVIP  372 (479)
T ss_pred             CCCCCeee--EEEeccc-----------ceeeccC----CceEEEeeeccc---CceeEe--e----------ccccccC
Confidence            22222112  2222221           1122221    122222222200   000000  0          0000000


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ......++..|++++..|.. +++|+|+.+|.||+|-+....      ....++..+. -.+.|++++|+++|..+++..
T Consensus       373 ~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~------r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  373 ELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGL------RAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             CccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCc------cccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence            00011223479999999977 599999999999999997321      1234455554 567899999999994466666


Q ss_pred             eCCCcEEEEec
Q psy4577         317 SDDHTICLWDI  327 (384)
Q Consensus       317 s~Dg~i~iwd~  327 (384)
                      +....+-=|-.
T Consensus       445 GkEhRlGRW~~  455 (479)
T KOG0299|consen  445 GKEHRLGRWWC  455 (479)
T ss_pred             ccccccceeeE
Confidence            66666655544

>KOG2055|consensus

Probab=99.82  E-value=2e-18  Score=141.71  Aligned_cols=273  Identities=14%  Similarity=0.069  Sum_probs=171.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|||.-+ +|.+|+.|++++||.+....            ...+..+.--..+|.+.+|.|+|...+++++.-..+..|
T Consensus       219 v~FHp~~p-lllvaG~d~~lrifqvDGk~------------N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysy  285 (514)
T KOG2055|consen  219 VQFHPTAP-LLLVAGLDGTLRIFQVDGKV------------NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSY  285 (514)
T ss_pred             EEecCCCc-eEEEecCCCcEEEEEecCcc------------ChhheeeeeccCccceeeecCCCceEEEecccceEEEEe
Confidence            57999997 89999999999999987522            123333333456899999999999778899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.+.+..                +..      ...++. +..+.....+++++.++    .|.|.+-...+....   .
T Consensus       286 Dle~ak~~----------------k~~------~~~g~e-~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli---~  339 (514)
T KOG2055|consen  286 DLETAKVT----------------KLK------PPYGVE-EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI---T  339 (514)
T ss_pred             eccccccc----------------ccc------CCCCcc-cchhheeEecCCCCeEEEcccCceEEeehhhhhhhh---h
Confidence            99875221                111      111111 22344566778888776    455444333222211   1


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      +...+                                     ..+..+.|+.+++.+.+..-++++-.|..    .....
T Consensus       340 s~Kie-------------------------------------G~v~~~~fsSdsk~l~~~~~~GeV~v~nl----~~~~~  378 (514)
T KOG2055|consen  340 SFKIE-------------------------------------GVVSDFTFSSDSKELLASGGTGEVYVWNL----RQNSC  378 (514)
T ss_pred             eeeec-------------------------------------cEEeeEEEecCCcEEEEEcCCceEEEEec----CCcce
Confidence            11111                                     12333333333333333333332222211    11122


Q ss_pred             EEEEeecCCce--EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577         237 IEIKINHEGEV--NRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       237 ~~~~~~~~~~v--~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                      +... ...+.|  ++++.++++. +||+||..|.|.|||.+....    +..++|+..+..-...|++++|+||. ++||
T Consensus       379 ~~rf-~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~----s~~PkPik~~dNLtt~Itsl~Fn~d~-qiLA  451 (514)
T KOG2055|consen  379 LHRF-VDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFA----STNPKPIKTVDNLTTAITSLQFNHDA-QILA  451 (514)
T ss_pred             EEEE-eecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhc----cCCCCchhhhhhhheeeeeeeeCcch-hhhh
Confidence            2222 233334  4667778885 999999999999999764332    45567877777777899999999998 7888


Q ss_pred             EeeC--CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccc
Q psy4577         315 SASD--DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADP  364 (384)
Q Consensus       315 s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  364 (384)
                      -+|.  +..+++-.+.+.+..++++..-.    --+.|+|++|||.+..++-
T Consensus       452 iaS~~~knalrLVHvPS~TVFsNfP~~n~----~vg~vtc~aFSP~sG~lAv  499 (514)
T KOG2055|consen  452 IASRVKKNALRLVHVPSCTVFSNFPTSNT----KVGHVTCMAFSPNSGYLAV  499 (514)
T ss_pred             hhhhccccceEEEeccceeeeccCCCCCC----cccceEEEEecCCCceEEe
Confidence            7774  68999999988774444443322    2356999999998887553

>KOG1034|consensus

Probab=99.82  E-value=2.8e-19  Score=140.61  Aligned_cols=260  Identities=16%  Similarity=0.208  Sum_probs=177.5

Q ss_pred             CCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCC
Q psy4577           7 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVE   86 (384)
Q Consensus         7 ~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~   86 (384)
                      +..+||.|+.-|.|+|.|+..              .++...+.||...|+.|.|+|+.++++++||.|.+||+|++++. 
T Consensus       104 ~~p~la~~G~~GvIrVid~~~--------------~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-  168 (385)
T KOG1034|consen  104 GNPFLAAGGYLGVIRVIDVVS--------------GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-  168 (385)
T ss_pred             CCeeEEeecceeEEEEEecch--------------hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-
Confidence            445899999999999999986              46777888999999999999999889999999999999999885 


Q ss_pred             CccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecccccc
Q psy4577          87 PFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEW  162 (384)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~  162 (384)
                                  ..+.++        .-+.||  .+.|.++.|+++|.+++    |.++++|+++.+.+...+.      
T Consensus       169 ------------~Cv~Vf--------GG~egH--rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE------  220 (385)
T KOG1034|consen  169 ------------VCVAVF--------GGVEGH--RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE------  220 (385)
T ss_pred             ------------eEEEEe--------cccccc--cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh------
Confidence                        222222        233456  78899999999999998    9999999998665533211      


Q ss_pred             cceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE-EEEe
Q psy4577         163 PSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI-EIKI  241 (384)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~  241 (384)
                        .+..|.++...                                               +.+   ......++. ....
T Consensus       221 --~s~~~~~~~t~-----------------------------------------------~pf---pt~~~~fp~fst~d  248 (385)
T KOG1034|consen  221 --LSITYSPNKTT-----------------------------------------------RPF---PTPKTHFPDFSTTD  248 (385)
T ss_pred             --hhcccCCCCcc-----------------------------------------------CcC---Cccccccccccccc
Confidence              11222222110                                               000   000001111 1233


Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC----CCCCCccceeeecCCCCceEEE--EeCCCCCCeEEE
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP----DPNGECHPDLRLRGHQKEGYGL--SWNPSLNGYLLS  315 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~h~~~i~~~--~~s~~~~~~l~s  315 (384)
                      -|...|-|+.|--   +++++=|-++.|..|...+..+..    .+......+..+.-....|+-+  +|.|-+ .+||.
T Consensus       249 iHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~  324 (385)
T KOG1034|consen  249 IHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLAL  324 (385)
T ss_pred             cccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhh
Confidence            5888899998865   488888889999999874322221    0111222233444444456655  455666 79999


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeeec--cCCcEeEEEEecCCCcccccccccc
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFTG--HTAVVELELIERLTKKADPVCTLEK  370 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~~c~~~~  370 (384)
                      |...|.|++||++.....     ...++..  ....|...+||.|+..+..+|....
T Consensus       325 gnq~g~v~vwdL~~~ep~-----~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~  376 (385)
T KOG1034|consen  325 GNQSGKVYVWDLDNNEPP-----KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGT  376 (385)
T ss_pred             ccCCCcEEEEECCCCCCc-----cCceEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence            999999999999987621     2233332  2356999999999999998886543

>KOG0267|consensus

Probab=99.81  E-value=4e-20  Score=159.53  Aligned_cols=180  Identities=20%  Similarity=0.297  Sum_probs=139.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |.|++... +|++|+.+|+|++||++.              ...+.++.||...+.+++|+|-+. +.|+++.|+.+++|
T Consensus        76 l~f~~~E~-LlaagsasgtiK~wDlee--------------Ak~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iw  139 (825)
T KOG0267|consen   76 LTFDTSER-LLAAGSASGTIKVWDLEE--------------AKIVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIW  139 (825)
T ss_pred             eecCcchh-hhcccccCCceeeeehhh--------------hhhhhhhhccccCcceeeeccceE-Eeccccccccceeh
Confidence            46788876 899999999999999986              577889999999999999999999 66999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+...             +..+.++           +|  ...|..+.|+|+|..++    |.++++||...+.+     
T Consensus       140 D~Rk~-------------Gc~~~~~-----------s~--~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~-----  188 (825)
T KOG0267|consen  140 DIRKK-------------GCSHTYK-----------SH--TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL-----  188 (825)
T ss_pred             hhhcc-------------Cceeeec-----------CC--cceeEEEeecCCCceeeccCCcceeeeeccccccc-----
Confidence            99743             2222222           22  34467899999999888    56777777643332     


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (825)
T KOG0267|consen  189 --------------------------------------------------------------------------------  188 (825)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ...+..|++.+.++.|+|.. .++++|+.|+++++||++.          .+.+.........|.+++|+|++ ..+++|
T Consensus       189 ~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dlet----------fe~I~s~~~~~~~v~~~~fn~~~-~~~~~G  256 (825)
T KOG0267|consen  189 SKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLET----------FEVISSGKPETDGVRSLAFNPDG-KIVLSG  256 (825)
T ss_pred             ccccccccccccccccCchh-hhhccCCCCceeeeeccce----------eEEeeccCCccCCceeeeecCCc-eeeecC
Confidence            22223578889999999988 5999999999999999852          22333444556789999999998 677777


Q ss_pred             eCC
Q psy4577         317 SDD  319 (384)
Q Consensus       317 s~D  319 (384)
                      ..+
T Consensus       257 ~q~  259 (825)
T KOG0267|consen  257 EQI  259 (825)
T ss_pred             chh
Confidence            655

>KOG0301|consensus

Probab=99.81  E-value=9.1e-19  Score=150.56  Aligned_cols=228  Identities=15%  Similarity=0.143  Sum_probs=162.7

Q ss_pred             CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec
Q psy4577          42 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE  121 (384)
Q Consensus        42 ~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (384)
                      .++...+.||+..|..+++.+...  ++++|.||++++|+-...+..                 ...     .+.+|  .
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l-----------------~~~-----~~~~~--~   57 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYL-----------------ETH-----AFEGP--K   57 (745)
T ss_pred             ceeEEEeccCccchheeEecCCeE--EeecCCCCceeeeeccCcccc-----------------cce-----ecccC--c
Confidence            467788899999999999876654  679999999999987553111                 100     01111  1


Q ss_pred             cCee-EEEEec-Cc-eeee---cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCC
Q psy4577         122 WPSL-TAQWLP-DV-TRVI---NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDE  195 (384)
Q Consensus       122 ~~v~-~~~~~~-~~-~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (384)
                      +-+. +++|.+ ++ +.+.   |.++.+|...+..-+.++.+|...                                  
T Consensus        58 g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn----------------------------------  103 (745)
T KOG0301|consen   58 GFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN----------------------------------  103 (745)
T ss_pred             ceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc----------------------------------
Confidence            1222 366664 22 2222   888888887776555555555432                                  


Q ss_pred             CCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q psy4577         196 QNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT  275 (384)
Q Consensus       196 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~  275 (384)
                           +.+++...++. ++..+||.+.+.|..     +.. .....+|...|.++++-|.+  .++|||.|.+|++|.-.
T Consensus       104 -----VC~ls~~~~~~-~iSgSWD~TakvW~~-----~~l-~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~  169 (745)
T KOG0301|consen  104 -----VCSLSIGEDGT-LISGSWDSTAKVWRI-----GEL-VYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG  169 (745)
T ss_pred             -----eeeeecCCcCc-eEecccccceEEecc-----hhh-hcccCCcchheeeeeecCCC--cEEeccCcceeeeccCC
Confidence                 33333322333 567789988887743     222 33367999999999999977  68999999999999852


Q ss_pred             CCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEE
Q psy4577         276 KHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELI  355 (384)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  355 (384)
                                  ..+.+|.||...|..+++-+++  .|+||+.||.|++|++ ++.       ++..+.||+..|+++..
T Consensus       170 ------------~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~-~ge-------~l~~~~ghtn~vYsis~  227 (745)
T KOG0301|consen  170 ------------TLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDL-DGE-------VLLEMHGHTNFVYSISM  227 (745)
T ss_pred             ------------chhhhhccchhheeeeEEecCC--CeEeecCCceEEEEec-cCc-------eeeeeeccceEEEEEEe
Confidence                        2456899999999999999985  6899999999999999 455       89999999999999996


Q ss_pred             ecCCCccccc
Q psy4577         356 ERLTKKADPV  365 (384)
Q Consensus       356 sp~~~~~~~~  365 (384)
                      .+.+..+.++
T Consensus       228 ~~~~~~Ivs~  237 (745)
T KOG0301|consen  228 ALSDGLIVST  237 (745)
T ss_pred             cCCCCeEEEe
Confidence            6666555444

>KOG1408|consensus

Probab=99.81  E-value=5.3e-19  Score=152.72  Aligned_cols=243  Identities=19%  Similarity=0.245  Sum_probs=170.2

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC--CCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~--~~~~l~s~s~D~~i~   78 (384)
                      |+.||+++ .||+|..-|.|+||++..              .+.......|...|.||.|+..  +..+||+++.|+.|.
T Consensus       465 ~~vSp~gq-hLAsGDr~GnlrVy~Lq~--------------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIH  529 (1080)
T KOG1408|consen  465 LAVSPDGQ-HLASGDRGGNLRVYDLQE--------------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIH  529 (1080)
T ss_pred             EEECCCcc-eecccCccCceEEEEehh--------------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEE
Confidence            46799998 599999999999999986              3556667899999999999753  344899999999999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCc--eeee----cceeeeecccccccc
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV--TRVI----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~----d~~v~~w~~~~~~~~  152 (384)
                      |+|+...                       -.+.+++-+|  ...|+++.|.-.|  ..++    |..+.+ +...    
T Consensus       530 V~Dv~rn-----------------------y~l~qtld~H--SssITsvKFa~~gln~~MiscGADksimF-r~~q----  579 (1080)
T KOG1408|consen  530 VYDVKRN-----------------------YDLVQTLDGH--SSSITSVKFACNGLNRKMISCGADKSIMF-RVNQ----  579 (1080)
T ss_pred             EEecccc-----------------------cchhhhhccc--ccceeEEEEeecCCceEEEeccCchhhhe-ehhc----
Confidence            9998542                       1134566677  6789999998776  2332    332211 1100    


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                          ...      ..                ..+.-++++   -....++.+...+..+.+.+..-|.+++.|+.....+
T Consensus       580 ----k~~------~g----------------~~f~r~t~t---~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq  630 (1080)
T KOG1408|consen  580 ----KAS------SG----------------RLFPRHTQT---LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ  630 (1080)
T ss_pred             ----ccc------Cc----------------eeccccccc---cccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence                000      00                000001111   1223466666666667777777777776664422211


Q ss_pred             CceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCe
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGY  312 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~  312 (384)
                      .+ .......|.+...-+...|.| .++|+.+.|.++.++|+.        ++++  +..+.||...|+.+.|.+|. +.
T Consensus       631 ~k-~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~--------sgEc--vA~m~GHsE~VTG~kF~nDC-kH  697 (1080)
T KOG1408|consen  631 VK-SFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFV--------SGEC--VAQMTGHSEAVTGVKFLNDC-KH  697 (1080)
T ss_pred             ee-eecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEec--------cchh--hhhhcCcchheeeeeecccc-hh
Confidence            11 122234577888899999999 599999999999999996        5654  55889999999999999999 89


Q ss_pred             EEEeeCCCcEEEEecCCC
Q psy4577         313 LLSASDDHTICLWDINAT  330 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~~  330 (384)
                      |++.+.||.|.||.+...
T Consensus       698 lISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  698 LISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             heeecCCceEEEEECchh
Confidence            999999999999998653

>KOG0289|consensus

Probab=99.81  E-value=3.2e-18  Score=139.50  Aligned_cols=234  Identities=14%  Similarity=0.191  Sum_probs=160.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      +.|+|+.. .+++++.|..|+||.....              ........|..+|+.+..+|.|.| |++++.|++..+-
T Consensus       267 v~~~~~~~-~v~~aSad~~i~vws~~~~--------------s~~~~~~~h~~~V~~ls~h~tgeY-llsAs~d~~w~Fs  330 (506)
T KOG0289|consen  267 VKFHKDLD-TVITASADEIIRVWSVPLS--------------SEPTSSRPHEEPVTGLSLHPTGEY-LLSASNDGTWAFS  330 (506)
T ss_pred             EEeccchh-heeecCCcceEEeeccccc--------------cCccccccccccceeeeeccCCcE-EEEecCCceEEEE
Confidence            46889987 6999999999999998752              222334679999999999999995 5599999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeee-eeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTH-ALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |++++..+             .+            ..+ ..+..+.+++|+|||..+.    |+.+++||+..+.....+
T Consensus       331 d~~~g~~l-------------t~------------vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F  385 (506)
T KOG0289|consen  331 DISSGSQL-------------TV------------VSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF  385 (506)
T ss_pred             EccCCcEE-------------EE------------EeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence            99876221             10            011 1134577999999997776    999999999776544333


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      .+|..                                       .|..+.|+.++-.+.+...|.....|+..-.  ..+
T Consensus       386 pght~---------------------------------------~vk~i~FsENGY~Lat~add~~V~lwDLRKl--~n~  424 (506)
T KOG0289|consen  386 PGHTG---------------------------------------PVKAISFSENGYWLATAADDGSVKLWDLRKL--KNF  424 (506)
T ss_pred             CCCCC---------------------------------------ceeEEEeccCceEEEEEecCCeEEEEEehhh--ccc
Confidence            33322                                       2333333333222222233333333322100  111


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      +. ........|.++.|.+.|. +|+.++.|=.|++++-.        ......+..+.-|.+..+++.|..+. +++++
T Consensus       425 kt-~~l~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~k~--------~k~W~~~~~~~~~sg~st~v~Fg~~a-q~l~s  493 (506)
T KOG0289|consen  425 KT-IQLDEKKEVNSLSFDQSGT-YLGIAGSDLQVYICKKK--------TKSWTEIKELADHSGLSTGVRFGEHA-QYLAS  493 (506)
T ss_pred             ce-eeccccccceeEEEcCCCC-eEEeecceeEEEEEecc--------cccceeeehhhhcccccceeeecccc-eEEee
Confidence            11 1223344799999999996 88888888777777754        45566677888899999999999987 89999


Q ss_pred             eeCCCcEEEEec
Q psy4577         316 ASDDHTICLWDI  327 (384)
Q Consensus       316 ~s~Dg~i~iwd~  327 (384)
                      +|.|..++++-+
T Consensus       494 ~smd~~l~~~a~  505 (506)
T KOG0289|consen  494 TSMDAILRLYAL  505 (506)
T ss_pred             ccchhheEEeec
Confidence            999999988754

>KOG1188|consensus

Probab=99.81  E-value=2.4e-18  Score=136.14  Aligned_cols=196  Identities=15%  Similarity=0.241  Sum_probs=137.0

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC-CCcEEEEEecCCeEEEEEcccCCC
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN-EPWVICSVSEDNIMQILSVVCVEP   87 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~   87 (384)
                      ..+|++...|.|++||..+              .+.+..+.+|...++.++|..+ ++..+.+|+.||+||+||++....
T Consensus        41 ~~vav~lSngsv~lyd~~t--------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e  106 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT--------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE  106 (376)
T ss_pred             eeEEEEecCCeEEEEeccc--------------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh
Confidence            4689999999999999987              4677888999999999999764 666889999999999999987422


Q ss_pred             ccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee--------cceeeeeccccccccceeeccc
Q psy4577          88 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI--------NEEYKIWKKNTPFLYDLVMTHA  159 (384)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------d~~v~~w~~~~~~~~~~~~~~~  159 (384)
                      .+           ...|..+.+            .+..+++-.-.+..++        +..|.+||.+....        
T Consensus       107 ~a-----------~~~~~~~~~------------~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq--------  155 (376)
T KOG1188|consen  107 SA-----------RISWTQQSG------------TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ--------  155 (376)
T ss_pred             hh-----------heeccCCCC------------CcceEeeccCcCCeEEeccccccCceEEEEEEeccccc--------
Confidence            11           112222221            1111222111122221        33333333322111        


Q ss_pred             ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE
Q psy4577         160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI  239 (384)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  239 (384)
                                                                                                 .....
T Consensus       156 ---------------------------------------------------------------------------~l~~~  160 (376)
T KOG1188|consen  156 ---------------------------------------------------------------------------LLRQL  160 (376)
T ss_pred             ---------------------------------------------------------------------------hhhhh
Confidence                                                                                       00112


Q ss_pred             EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      ...|.+.|++++|+|.++++|+|||.||.|.|||+...       ....++.....|...|.++.|+.++-..|.+-+..
T Consensus       161 ~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d-------~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~  233 (376)
T KOG1188|consen  161 NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD-------NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHM  233 (376)
T ss_pred             hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC-------cchhhHHHhhcccceeeeeeeecCCcceEEEEEcc
Confidence            23699999999999999999999999999999999753       22334556667888899999998864578888999


Q ss_pred             CcEEEEecCCCC
Q psy4577         320 HTICLWDINATP  331 (384)
Q Consensus       320 g~i~iwd~~~~~  331 (384)
                      .+..+|+++.+.
T Consensus       234 Etf~~~ele~~~  245 (376)
T KOG1188|consen  234 ETFAIYELEDGS  245 (376)
T ss_pred             CceeEEEccCCC
Confidence            999999999886

>KOG1587|consensus

Probab=99.80  E-value=3.5e-18  Score=150.28  Aligned_cols=265  Identities=14%  Similarity=0.155  Sum_probs=170.2

Q ss_pred             CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeee
Q psy4577          18 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVI   97 (384)
Q Consensus        18 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~   97 (384)
                      +.+.||+++..           ..|+...  .. ...|+|+.|+|..++++|.|..+|+|.+||+..+....        
T Consensus       222 ~~~~vW~~~~p-----------~~Pe~~~--~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------  279 (555)
T KOG1587|consen  222 GVLLVWSLKNP-----------NTPELVL--ES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------  279 (555)
T ss_pred             ceEEEEecCCC-----------CCceEEE--ec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC--------
Confidence            46899999863           2234443  33 46899999999999899999999999999998752100        


Q ss_pred             eeeEEEeccCCcccccceeeeeeccCeeEEEEecCcee--ee----cceeeeeccccccccce-eeccc---------cc
Q psy4577          98 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR--VI----NEEYKIWKKNTPFLYDL-VMTHA---------LE  161 (384)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~----d~~v~~w~~~~~~~~~~-~~~~~---------~~  161 (384)
                                ...+  ....|.+.+++.++.|..+-..  ++    ||.|..|+++....... .....         ..
T Consensus       280 ----------~s~l--s~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~  347 (555)
T KOG1587|consen  280 ----------PSGL--SALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKA  347 (555)
T ss_pred             ----------Cccc--ccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccc
Confidence                      0011  2334555889999999876533  33    99999997755433110 00000         00


Q ss_pred             ccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEe
Q psy4577         162 WPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKI  241 (384)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  241 (384)
                      ....++.+.+..         ...+++|+..+      .|....           ..+.....     . ..........
T Consensus       348 ~~~t~~~F~~~~---------p~~FiVGTe~G------~v~~~~-----------r~g~~~~~-----~-~~~~~~~~~~  395 (555)
T KOG1587|consen  348 VGATSLKFEPTD---------PNHFIVGTEEG------KVYKGC-----------RKGYTPAP-----E-VSYKGHSTFI  395 (555)
T ss_pred             cceeeEeeccCC---------CceEEEEcCCc------EEEEEe-----------ccCCcccc-----c-cccccccccc
Confidence            001111121111         12234443321      111111           00000000     0 0001122455


Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      .|.+.|+++.++|.+..+|++++ |.+++||...         ....|+..+..+...+++++|||..+.+|+++..||.
T Consensus       396 ~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~---------~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~  465 (555)
T KOG1587|consen  396 THIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSED---------VIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN  465 (555)
T ss_pred             ccCcceEeeecCCCccceeeeec-cceeEecccc---------CCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence            78999999999999877777777 9999999963         2455777888888889999999999899999999999


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                      |.+||+......     ++.+..-+....+.+.|++.|+.++
T Consensus       466 l~iWDLl~~~~~-----Pv~s~~~~~~~l~~~~~s~~g~~la  502 (555)
T KOG1587|consen  466 LDIWDLLQDDEE-----PVLSQKVCSPALTRVRWSPNGKLLA  502 (555)
T ss_pred             eehhhhhccccC-----CcccccccccccceeecCCCCcEEE
Confidence            999999876533     6666666677788899999888654

>KOG1538|consensus

Probab=99.80  E-value=1.8e-18  Score=148.53  Aligned_cols=276  Identities=13%  Similarity=0.157  Sum_probs=182.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|-|||..+++.+  +..+.|||...              ..++.+++||++.|+|++|+.||+ .+|||+.|+.|.+|
T Consensus        18 ~afkPDGsqL~lAA--g~rlliyD~nd--------------G~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W   80 (1081)
T KOG1538|consen   18 IAFKPDGTQLILAA--GSRLLVYDTSD--------------GTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIW   80 (1081)
T ss_pred             eEECCCCceEEEec--CCEEEEEeCCC--------------cccccccccccceEEEEEEccCCc-eeccCCCceeEEEe
Confidence            57999998755554  46799999986              478899999999999999999999 88999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeec---ceeeeeccccccccceeec
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVIN---EEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d---~~v~~w~~~~~~~~~~~~~  157 (384)
                      ...-.                      +.    ..-.|  .+.|.++.|+|-...++.   ..+-+|........    .
T Consensus        81 ~~klE----------------------G~----LkYSH--~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~----K  128 (1081)
T KOG1538|consen   81 TSKLE----------------------GI----LKYSH--NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS----K  128 (1081)
T ss_pred             ccccc----------------------ce----eeecc--CCeeeEeecCchHHHhhhcchhhccccChhhhhHH----h
Confidence            86431                      10    11123  677889999998877763   33456655433221    1


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI  237 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  237 (384)
                      +.....+.++.|..++                                     ..+.....+++...-..  ....+..+
T Consensus       129 ~kss~R~~~CsWtnDG-------------------------------------qylalG~~nGTIsiRNk--~gEek~~I  169 (1081)
T KOG1538|consen  129 HKSSSRIICCSWTNDG-------------------------------------QYLALGMFNGTISIRNK--NGEEKVKI  169 (1081)
T ss_pred             hhhheeEEEeeecCCC-------------------------------------cEEEEeccCceEEeecC--CCCcceEE
Confidence            1122224445555443                                     22222222222211100  01122334


Q ss_pred             EEEeecCCceEEEEEcCCCC----cEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577         238 EIKINHEGEVNRARYMPQNP----CVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l  313 (384)
                      ....+.+.+|.+++|+|...    .+++...-..++.++.+.         |...-  .-+.-.-.-.|+.+.++| .++
T Consensus       170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls---------G~~Ig--k~r~L~FdP~CisYf~NG-Ey~  237 (1081)
T KOG1538|consen  170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS---------GKQIG--KDRALNFDPCCISYFTNG-EYI  237 (1081)
T ss_pred             eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec---------ceeec--ccccCCCCchhheeccCC-cEE
Confidence            44446788999999999631    366666666677777663         32111  001111134589999999 599


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccceeeEEEEEeeeC
Q psy4577         314 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKKKEVVVTMFAL  384 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~~~~~~~~~~~  384 (384)
                      ..|+.|+.++++--+.-        .+.++.....+|+.++.+|.+....-.|......=+.-+..|++||
T Consensus       238 LiGGsdk~L~~fTR~Gv--------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~l  300 (1081)
T KOG1538|consen  238 LLGGSDKQLSLFTRDGV--------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGL  300 (1081)
T ss_pred             EEccCCCceEEEeecCe--------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhh
Confidence            99999999999965543        5666666778999999999999988889888777777777777664

>KOG0294|consensus

Probab=99.79  E-value=3.8e-17  Score=128.04  Aligned_cols=229  Identities=15%  Similarity=0.203  Sum_probs=152.9

Q ss_pred             EEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccc
Q psy4577          11 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDD   90 (384)
Q Consensus        11 lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~   90 (384)
                      |++|++...|.=+++..+.  ....+........++.+..|.++|++++.+  ++ ++||||.|-+|+|||+.....   
T Consensus         4 iIvGtYE~~i~Gf~l~~~~--~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~q---   75 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEP--KGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQ---   75 (362)
T ss_pred             EEEeeeeeEEEEEEeccCc--cccccccceeeeccccccccccceeEEEec--ce-eEeccCCCCcEEEEeccchhh---
Confidence            7888888877666665322  111111112223467788999999999985  66 789999999999999976311   


Q ss_pred             hhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCce--eee----cceeeeeccccccccceeecccccccc
Q psy4577          91 AVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT--RVI----NEEYKIWKKNTPFLYDLVMTHALEWPS  164 (384)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~  164 (384)
                                           ...+..|  .+.++++.|.++-.  .++    ||.+.+|+...                
T Consensus        76 ---------------------lg~ll~H--agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~----------------  116 (362)
T KOG0294|consen   76 ---------------------LGILLSH--AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS----------------  116 (362)
T ss_pred             ---------------------hcceecc--ccceEEEEecCCcchhheeeecCCCcEEEEEcCC----------------
Confidence                                 1233445  67899999998764  333    66666665421                


Q ss_pred             eeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecC
Q psy4577         165 LTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHE  244 (384)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  244 (384)
                                                                                           ......+.+|.
T Consensus       117 ---------------------------------------------------------------------W~~~~slK~H~  127 (362)
T KOG0294|consen  117 ---------------------------------------------------------------------WELLKSLKAHK  127 (362)
T ss_pred             ---------------------------------------------------------------------eEEeeeecccc
Confidence                                                                                 11244556899


Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC-------------CCCCCcc--------ceeee------c--C
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP-------------DPNGECH--------PDLRL------R--G  295 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~-------------~~~~~~~--------~~~~~------~--~  295 (384)
                      +.|+.++.+|.++ +.++-+.|+.+|.||+-......             .+.+..-        .+..+      .  .
T Consensus       128 ~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~  206 (362)
T KOG0294|consen  128 GQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIE  206 (362)
T ss_pred             cccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhh
Confidence            9999999999996 88888999999999986322110             0111100        00000      0  0


Q ss_pred             CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEE--ecCCCccccc
Q psy4577         296 HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELI--ERLTKKADPV  365 (384)
Q Consensus       296 h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--sp~~~~~~~~  365 (384)
                      ....+.++.|-..  ..|++|+.|+.|.+||.....       ++..+.+|..+|-++.+  .|++..+.+.
T Consensus       207 ~~~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds~~-------~~~~~~AH~~RVK~i~~~~~~~~~~lvTa  269 (362)
T KOG0294|consen  207 NPKRILCATFLDG--SELLVGGDNEWISLKDTDSDT-------PLTEFLAHENRVKDIASYTNPEHEYLVTA  269 (362)
T ss_pred             ccccceeeeecCC--ceEEEecCCceEEEeccCCCc-------cceeeecchhheeeeEEEecCCceEEEEe
Confidence            1123566666544  489999999999999999987       99999999999999884  4555554444

>KOG2048|consensus

Probab=99.79  E-value=2.4e-17  Score=141.63  Aligned_cols=225  Identities=14%  Similarity=0.129  Sum_probs=158.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccc-ccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      ++|+.+.. .||.+-.||.|-||+++..             +-+..++.|| ...|-+|+|++.++  |+|.+.+|+|.-
T Consensus        31 lA~s~kS~-~lAvsRt~g~IEiwN~~~~-------------w~~~~vi~g~~drsIE~L~W~e~~R--LFS~g~sg~i~E   94 (691)
T KOG2048|consen   31 LAYSHKSN-QLAVSRTDGNIEIWNLSNN-------------WFLEPVIHGPEDRSIESLAWAEGGR--LFSSGLSGSITE   94 (691)
T ss_pred             EEEeccCC-ceeeeccCCcEEEEccCCC-------------ceeeEEEecCCCCceeeEEEccCCe--EEeecCCceEEE
Confidence            46777776 6999999999999999852             3455555555 56799999997777  569999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      ||+.+.+.             ....+             .....+++++.+|.++.++    ||.+...+..        
T Consensus        95 wDl~~lk~-------------~~~~d-------------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~--------  140 (691)
T KOG2048|consen   95 WDLHTLKQ-------------KYNID-------------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIG--------  140 (691)
T ss_pred             EecccCce-------------eEEec-------------CCCcceeEEEeCCccceEEeecCCceEEEEecC--------
Confidence            99987521             11111             1245678888888776654    2211110000        


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                  .+.+
T Consensus       141 ----------------------------------------------------------------------------p~~I  144 (691)
T KOG2048|consen  141 ----------------------------------------------------------------------------PDKI  144 (691)
T ss_pred             ----------------------------------------------------------------------------CceE
Confidence                                                                                        0011


Q ss_pred             eEE-EEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceee--ecC----CCCceEEEEeCCC
Q psy4577         236 EIE-IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLR--LRG----HQKEGYGLSWNPS  308 (384)
Q Consensus       236 ~~~-~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~----h~~~i~~~~~s~~  308 (384)
                      ... .+...++.|.+++|+|++. .+++|+.||.|++||...        +....+.+  +.+    -..-|+++.|-.+
T Consensus       145 ~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~Iriwd~~~--------~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd  215 (691)
T KOG2048|consen  145 TYKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDGVIRIWDVKS--------GQTLHIITMQLDRLSKREPTIVWSVLFLRD  215 (691)
T ss_pred             EEEeecccccceEEEEEecCCcc-EEEecccCceEEEEEcCC--------CceEEEeeecccccccCCceEEEEEEEeec
Confidence            111 1122367899999999994 899999999999999973        32222111  111    2235788888877


Q ss_pred             CCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccccc
Q psy4577         309 LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLE  369 (384)
Q Consensus       309 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~  369 (384)
                      +  .|++|..-|+|.+||...++       .++.+..|.+.|.+++-++++..+.+.....
T Consensus       216 ~--tI~sgDS~G~V~FWd~~~gT-------LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~  267 (691)
T KOG2048|consen  216 S--TIASGDSAGTVTFWDSIFGT-------LIQSHSCHDADVLALAVADNEDRVFSAGVDP  267 (691)
T ss_pred             C--cEEEecCCceEEEEcccCcc-------hhhhhhhhhcceeEEEEcCCCCeEEEccCCC
Confidence            4  89999999999999999999       9999999999999999999987665554333

>KOG2445|consensus

Probab=99.79  E-value=4.1e-17  Score=127.45  Aligned_cols=256  Identities=13%  Similarity=0.192  Sum_probs=147.5

Q ss_pred             cccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEE
Q psy4577          49 GGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ  128 (384)
Q Consensus        49 ~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  128 (384)
                      .+|.+-|.++.|.+-|+ .+||||.|++|+|||......-         -..-..|+           .|  .++|..+.
T Consensus        10 s~h~DlihdVs~D~~GR-RmAtCSsDq~vkI~d~~~~s~~---------W~~Ts~Wr-----------ah--~~Si~rV~   66 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGR-RMATCSSDQTVKIWDSTSDSGT---------WSCTSSWR-----------AH--DGSIWRVV   66 (361)
T ss_pred             cCCcceeeeeeecccCc-eeeeccCCCcEEEEeccCCCCc---------eEEeeeEE-----------ec--CCcEEEEE
Confidence            58999999999999999 7799999999999997442100         00111222           22  66788899


Q ss_pred             EecC--ceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEE
Q psy4577         129 WLPD--VTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIA  202 (384)
Q Consensus       129 ~~~~--~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  202 (384)
                      |.+.  |+.++    |+++++|.-.....    ..+...|       ...            ....       .+.-.+.
T Consensus        67 WAhPEfGqvvA~cS~Drtv~iWEE~~~~~----~~~~~~W-------v~~------------ttl~-------DsrssV~  116 (361)
T KOG2445|consen   67 WAHPEFGQVVATCSYDRTVSIWEEQEKSE----EAHGRRW-------VRR------------TTLV-------DSRSSVT  116 (361)
T ss_pred             ecCccccceEEEEecCCceeeeeeccccc----cccccee-------EEE------------EEee-------cCCccee
Confidence            8765  45555    99999996531111    1111111       000            0000       0111233


Q ss_pred             EeecCCCCc--ccccccccCcCCCCCCccCCCCceeEEEEee----------------cCCceEEEEEcCCC--CcEEEE
Q psy4577         203 SVQLPNEDA--QFDASNYDTDKGDFGGFGSVSGKIEIEIKIN----------------HEGEVNRARYMPQN--PCVIAT  262 (384)
Q Consensus       203 ~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~v~~v~~~p~~--~~~l~s  262 (384)
                      .+.|.+...  .+.+..-|+..++|       ..+.+..+..                +.....||.|+|..  +.+||.
T Consensus       117 DV~FaP~hlGLklA~~~aDG~lRIY-------EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAv  189 (361)
T KOG2445|consen  117 DVKFAPKHLGLKLAAASADGILRIY-------EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAV  189 (361)
T ss_pred             EEEecchhcceEEEEeccCcEEEEE-------ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEE
Confidence            333322211  11222222222211       1111111111                22345567777631  126777


Q ss_pred             EeCC-----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCC---CeEEEeeCCCcEEEEecCCCC---
Q psy4577         263 KTPS-----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLN---GYLLSASDDHTICLWDINATP---  331 (384)
Q Consensus       263 ~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~---~~l~s~s~Dg~i~iwd~~~~~---  331 (384)
                      |+.+     +.++||.....      ......+.++.+|..+|++|+|.|+-.   .+||+++.|| |+||+++...   
T Consensus       190 gs~e~a~~~~~~~Iye~~e~------~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i  262 (361)
T KOG2445|consen  190 GSDEDAPHLNKVKIYEYNEN------GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAI  262 (361)
T ss_pred             EcccCCccccceEEEEecCC------cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchh
Confidence            6655     46777776532      113445567889999999999999631   3899999999 9999998421   


Q ss_pred             ---------CC-CccccceeeeeccCCcEeEEEEecCCCccccccccccc
Q psy4577         332 ---------KE-NRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKA  371 (384)
Q Consensus       332 ---------~~-~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~  371 (384)
                               .. .-.+..+..+.+|++.|+.+.|+-.|..+++....+.+
T Consensus       263 ~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V  312 (361)
T KOG2445|consen  263 EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV  312 (361)
T ss_pred             hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence                     00 01122455567899999999999999988887544433

>KOG1524|consensus

Probab=99.78  E-value=5e-18  Score=142.08  Aligned_cols=202  Identities=18%  Similarity=0.192  Sum_probs=145.3

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCcc
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFD   89 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~   89 (384)
                      .|+.++.||.+.|-+-..               +.......|.+.|.|-.|+|+|..+ +|++.||.|++|.-..+    
T Consensus        77 ~~~i~s~DGkf~il~k~~---------------rVE~sv~AH~~A~~~gRW~~dGtgL-lt~GEDG~iKiWSrsGM----  136 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSA---------------RVERSISAHAAAISSGRWSPDGAGL-LTAGEDGVIKIWSRSGM----  136 (737)
T ss_pred             eEEEEcCCceEEEecccc---------------hhhhhhhhhhhhhhhcccCCCCcee-eeecCCceEEEEeccch----
Confidence            588888999999988653               5556667899999999999999955 59999999999986543    


Q ss_pred             chhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeecceeeeeccccccccceeecccccccceeeee
Q psy4577          90 DAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQW  169 (384)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~  169 (384)
                                           +..++..  .+.+|.|++|.|+...++              |..               
T Consensus       137 ---------------------LRStl~Q--~~~~v~c~~W~p~S~~vl--------------~c~---------------  164 (737)
T KOG1524|consen  137 ---------------------LRSTVVQ--NEESIRCARWAPNSNSIV--------------FCQ---------------  164 (737)
T ss_pred             ---------------------HHHHHhh--cCceeEEEEECCCCCceE--------------Eec---------------
Confidence                                 1111111  256789999999876543              100               


Q ss_pred             ccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEE
Q psy4577         170 LPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNR  249 (384)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  249 (384)
                                                ...+.|..+.                           ....+..-.+|.+-|.+
T Consensus       165 --------------------------g~h~~IKpL~---------------------------~n~k~i~WkAHDGiiL~  191 (737)
T KOG1524|consen  165 --------------------------GGHISIKPLA---------------------------ANSKIIRWRAHDGLVLS  191 (737)
T ss_pred             --------------------------CCeEEEeecc---------------------------cccceeEEeccCcEEEE
Confidence                                      0111222221                           12224455689999999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCC
Q psy4577         250 ARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINA  329 (384)
Q Consensus       250 v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~  329 (384)
                      +.|+|.. +++++|++|-.-+|||..         |.  ++..-..|..+|++++|+|+  ..++.+|.. +++   ++.
T Consensus       192 ~~W~~~s-~lI~sgGED~kfKvWD~~---------G~--~Lf~S~~~ey~ITSva~npd--~~~~v~S~n-t~R---~~~  253 (737)
T KOG1524|consen  192 LSWSTQS-NIIASGGEDFRFKIWDAQ---------GA--NLFTSAAEEYAITSVAFNPE--KDYLLWSYN-TAR---FSS  253 (737)
T ss_pred             eecCccc-cceeecCCceeEEeeccc---------Cc--ccccCChhccceeeeeeccc--cceeeeeee-eee---ecC
Confidence            9999999 599999999999999973         33  45566779999999999999  366666653 555   221


Q ss_pred             CCCCCccccceeeeeccCCcEeEEEEecCCCccccccccc
Q psy4577         330 TPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLE  369 (384)
Q Consensus       330 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~  369 (384)
                      .               ..+.|..++|||||.+++..|...
T Consensus       254 p---------------~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  254 P---------------RVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             C---------------CccceEEEEEcCCCceeeccccCc
Confidence            1               346799999999999988776544

>KOG0639|consensus

Probab=99.78  E-value=4.1e-18  Score=141.51  Aligned_cols=189  Identities=14%  Similarity=0.149  Sum_probs=142.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++.|||.. +..++..||.|.|||+.+              ..++..+.||++.+.||..+++|. .|-||+-|.+||.|
T Consensus       515 La~spDak-vcFsccsdGnI~vwDLhn--------------q~~VrqfqGhtDGascIdis~dGt-klWTGGlDntvRcW  578 (705)
T KOG0639|consen  515 LAISPDAK-VCFSCCSDGNIAVWDLHN--------------QTLVRQFQGHTDGASCIDISKDGT-KLWTGGLDNTVRCW  578 (705)
T ss_pred             hhcCCccc-eeeeeccCCcEEEEEccc--------------ceeeecccCCCCCceeEEecCCCc-eeecCCCccceeeh
Confidence            46799997 788888999999999987              578899999999999999999999 66799999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeecceeeeeccccccccceeecccc
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHAL  160 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~  160 (384)
                      |+..++                           .+..|.+...|+++.++|.+.-++-|.              .     
T Consensus       579 Dlregr---------------------------qlqqhdF~SQIfSLg~cP~~dWlavGM--------------e-----  612 (705)
T KOG0639|consen  579 DLREGR---------------------------QLQQHDFSSQIFSLGYCPTGDWLAVGM--------------E-----  612 (705)
T ss_pred             hhhhhh---------------------------hhhhhhhhhhheecccCCCccceeeec--------------c-----
Confidence            998752                           122344566678888888876554111              0     


Q ss_pred             cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEE
Q psy4577         161 EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK  240 (384)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  240 (384)
                                                         .++..+....                            +...+.+
T Consensus       613 -----------------------------------ns~vevlh~s----------------------------kp~kyql  629 (705)
T KOG0639|consen  613 -----------------------------------NSNVEVLHTS----------------------------KPEKYQL  629 (705)
T ss_pred             -----------------------------------cCcEEEEecC----------------------------Cccceee
Confidence                                               0001111111                            1123445


Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      .-|+.-|.++.|.+.|+ ++++.+.|..+..|...        -+.  .+...+ ....|.++..|.|. +|++|||.|.
T Consensus       630 hlheScVLSlKFa~cGk-wfvStGkDnlLnawrtP--------yGa--siFqsk-E~SsVlsCDIS~dd-kyIVTGSGdk  696 (705)
T KOG0639|consen  630 HLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTP--------YGA--SIFQSK-ESSSVLSCDISFDD-KYIVTGSGDK  696 (705)
T ss_pred             cccccEEEEEEecccCc-eeeecCchhhhhhccCc--------ccc--ceeecc-ccCcceeeeeccCc-eEEEecCCCc
Confidence            56888999999999996 99999999999999874        232  222222 45689999999997 8999999999


Q ss_pred             cEEEEec
Q psy4577         321 TICLWDI  327 (384)
Q Consensus       321 ~i~iwd~  327 (384)
                      ...||.+
T Consensus       697 kATVYeV  703 (705)
T KOG0639|consen  697 KATVYEV  703 (705)
T ss_pred             ceEEEEE
Confidence            9888875

>KOG0307|consensus

Probab=99.78  E-value=8.1e-19  Score=159.14  Aligned_cols=201  Identities=17%  Similarity=0.338  Sum_probs=147.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|...++||+|+.||.|.|||+.+...+...       .     -..-.+.|.+|+|+..-.++||+++.+|.+.||
T Consensus       122 LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~-------~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iW  189 (1049)
T KOG0307|consen  122 LDFNPFQGNLLASGADDGEILIWDLNKPETPFTP-------G-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIW  189 (1049)
T ss_pred             eeccccCCceeeccCCCCcEEEeccCCcCCCCCC-------C-----CCCCcccceEeccchhhhHHhhccCCCCCceec
Confidence            5799999889999999999999999873211100       0     112356899999999888899999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCcee-ee-------cceeeeecccccccc
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR-VI-------NEEYKIWKKNTPFLY  152 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~-------d~~v~~w~~~~~~~~  152 (384)
                      |++..+.+                      +  .+..+.....+..++|+|+... ++       .-.|.+||++..   
T Consensus       190 Dlr~~~pi----------------------i--~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a---  242 (1049)
T KOG0307|consen  190 DLRKKKPI----------------------I--KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA---  242 (1049)
T ss_pred             cccCCCcc----------------------c--ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc---
Confidence            99764211                      1  1111111234667888888632 22       122333333211   


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (1049)
T KOG0307|consen  243 --------------------------------------------------------------------------------  242 (1049)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCe
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGY  312 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~  312 (384)
                       ..+...+.+|...|.++.|++.+.++|+|++.|+.|.+|+.+        ++  +.+..+.....++..+.|+|..+.+
T Consensus       243 -ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~--------tg--Evl~~~p~~~nW~fdv~w~pr~P~~  311 (1049)
T KOG0307|consen  243 -SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN--------TG--EVLGELPAQGNWCFDVQWCPRNPSV  311 (1049)
T ss_pred             -CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC--------Cc--eEeeecCCCCcceeeeeecCCCcch
Confidence             111333458999999999999987899999999999999975        33  3466777777899999999998889


Q ss_pred             EEEeeCCCcEEEEecCCCC
Q psy4577         313 LLSASDDHTICLWDINATP  331 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~~~  331 (384)
                      ++.++.||.|-|+.+.+..
T Consensus       312 ~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  312 MAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             hhhheeccceeeeeeecCC
Confidence            9999999999999998765

>KOG0650|consensus

Probab=99.78  E-value=8.2e-18  Score=142.51  Aligned_cols=272  Identities=16%  Similarity=0.159  Sum_probs=168.3

Q ss_pred             CCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccce
Q psy4577          36 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLV  115 (384)
Q Consensus        36 ~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (384)
                      +..+.|..+...+.||++.|.+|...|.|. .|++|+.||+||||.+.++             +.++.|..         
T Consensus       384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~Tg-------------Rcvr~~~~---------  440 (733)
T KOG0650|consen  384 DLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATG-------------RCVRTVQF---------  440 (733)
T ss_pred             hcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecc-------------eEEEEEee---------
Confidence            445566677788899999999999999999 7899999999999999997             44444432         


Q ss_pred             eeeeeccCeeEEEEecCceee--e---cceeeeeccccc------cccceeecc-ccccc-ceeeeeccCCCCCCCCccc
Q psy4577         116 MTHALEWPSLTAQWLPDVTRV--I---NEEYKIWKKNTP------FLYDLVMTH-ALEWP-SLTAQWLPDVTRPEGKDYS  182 (384)
Q Consensus       116 ~~~~~~~~v~~~~~~~~~~~~--~---d~~v~~w~~~~~------~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~  182 (384)
                           .+.|.+++|+|.+..-  +   ...+.+-+..-+      ...+.+... ....| ...+.|.+.........  
T Consensus       441 -----d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~--  513 (733)
T KOG0650|consen  441 -----DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKG--  513 (733)
T ss_pred             -----cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccc--
Confidence                 3458899999988532  2   333333222111      011111111 00111 11233443322111111  


Q ss_pred             eeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEE
Q psy4577         183 IHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIAT  262 (384)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s  262 (384)
                      + ++.+..       .-.|.++.++..+..+.+..-+...+..... .........-+..-.+.|.++.|+|..+ +|+.
T Consensus       514 v-~~~I~~-------~k~i~~vtWHrkGDYlatV~~~~~~~~VliH-QLSK~~sQ~PF~kskG~vq~v~FHPs~p-~lfV  583 (733)
T KOG0650|consen  514 V-CIVIKH-------PKSIRQVTWHRKGDYLATVMPDSGNKSVLIH-QLSKRKSQSPFRKSKGLVQRVKFHPSKP-YLFV  583 (733)
T ss_pred             e-EEEEec-------CCccceeeeecCCceEEEeccCCCcceEEEE-ecccccccCchhhcCCceeEEEecCCCc-eEEE
Confidence            0 111111       1135556666666555555444332211110 0000000111122357899999999987 5555


Q ss_pred             EeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceee
Q psy4577         263 KTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTI  342 (384)
Q Consensus       263 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~  342 (384)
                      ++ -..|||||+..          .+.+..+.....+|.+++.+|.| .-|+.|+.|+.+..+|+.-+.+      +.++
T Consensus       584 aT-q~~vRiYdL~k----------qelvKkL~tg~kwiS~msihp~G-Dnli~gs~d~k~~WfDldlssk------Pyk~  645 (733)
T KOG0650|consen  584 AT-QRSVRIYDLSK----------QELVKKLLTGSKWISSMSIHPNG-DNLILGSYDKKMCWFDLDLSSK------PYKT  645 (733)
T ss_pred             Ee-ccceEEEehhH----------HHHHHHHhcCCeeeeeeeecCCC-CeEEEecCCCeeEEEEcccCcc------hhHH
Confidence            55 56899999952          23445566667789999999998 5888999999999999997654      9999


Q ss_pred             eeccCCcEeEEEEecCCCccccc
Q psy4577         343 FTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       343 ~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      ++.|...|++|+||+.-+..+++
T Consensus       646 lr~H~~avr~Va~H~ryPLfas~  668 (733)
T KOG0650|consen  646 LRLHEKAVRSVAFHKRYPLFASG  668 (733)
T ss_pred             hhhhhhhhhhhhhccccceeeee
Confidence            99999999999999988765544

>KOG4378|consensus

Probab=99.77  E-value=7.3e-18  Score=139.81  Aligned_cols=253  Identities=16%  Similarity=0.188  Sum_probs=153.6

Q ss_pred             CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeee
Q psy4577          18 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVI   97 (384)
Q Consensus        18 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~   97 (384)
                      ..++|||+....          ..++.+.....|  .+.++.|+....-.+++.+.|..|++|.-... .          
T Consensus        12 d~~kl~D~s~~~----------~~~~~~~~t~~p--g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~----------   68 (673)
T KOG4378|consen   12 DKTKLSDFSDLE----------TKSEYVHQTAEP--GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-T----------   68 (673)
T ss_pred             CceEEeeccccc----------CccccccCCCCC--cceeeeccccceEEEeecCCceeEEEecccCC-C----------
Confidence            459999997522          112222222223  49999998876534666778899999865432 0          


Q ss_pred             eeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCC
Q psy4577          98 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV  173 (384)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (384)
                       .++.+        .....+.    .-.|++......+++    .+.|+|||++...+...+..|.....++...|... 
T Consensus        69 -~~Vp~--------~~k~~gd----~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~De-  134 (673)
T KOG4378|consen   69 -PEVPR--------VRKLTGD----NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDE-  134 (673)
T ss_pred             -Cccce--------eeccccc----hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcc-
Confidence             00000        0111111    112222222334444    78899999997777777666654322222222111 


Q ss_pred             CCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEc
Q psy4577         174 TRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYM  253 (384)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  253 (384)
                                                +|.+++   .++.+.+...-.            +........+....|+-+.|+
T Consensus       135 --------------------------yiAsvs---~gGdiiih~~~t------------~~~tt~f~~~sgqsvRll~ys  173 (673)
T KOG4378|consen  135 --------------------------YIASVS---DGGDIIIHGTKT------------KQKTTTFTIDSGQSVRLLRYS  173 (673)
T ss_pred             --------------------------eeEEec---cCCcEEEEeccc------------CccccceecCCCCeEEEeecc
Confidence                                      122222   111111111000            000011111223456789999


Q ss_pred             CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCC
Q psy4577         254 PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKE  333 (384)
Q Consensus       254 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~  333 (384)
                      |..+.+|.+++++|.|.+||..         +......-...|..+...|+|+|..+.+|+|.+.|..|.+||+++.+  
T Consensus       174 ~skr~lL~~asd~G~VtlwDv~---------g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~--  242 (673)
T KOG4378|consen  174 PSKRFLLSIASDKGAVTLWDVQ---------GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA--  242 (673)
T ss_pred             cccceeeEeeccCCeEEEEecc---------CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc--
Confidence            9998899999999999999994         44433445677999999999999988999999999999999999765  


Q ss_pred             CccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         334 NRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       334 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                           ....+. ...+.+.|+|+++|..+++.
T Consensus       243 -----s~~~l~-y~~Plstvaf~~~G~~L~aG  268 (673)
T KOG4378|consen  243 -----STDRLT-YSHPLSTVAFSECGTYLCAG  268 (673)
T ss_pred             -----ccceee-ecCCcceeeecCCceEEEee
Confidence                 444443 45789999999999886554

>KOG2055|consensus

Probab=99.77  E-value=3.4e-17  Score=134.62  Aligned_cols=233  Identities=14%  Similarity=0.181  Sum_probs=143.1

Q ss_pred             ccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec
Q psy4577          52 TAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP  131 (384)
Q Consensus        52 ~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  131 (384)
                      .+.|++|.|+|..+ +|++|+.|++++|+.+...                    .+.  .  +-.-|-...++.+++|+|
T Consensus       213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk--------------------~N~--~--lqS~~l~~fPi~~a~f~p  267 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGK--------------------VNP--K--LQSIHLEKFPIQKAEFAP  267 (514)
T ss_pred             cCCceEEEecCCCc-eEEEecCCCcEEEEEecCc--------------------cCh--h--heeeeeccCccceeeecC
Confidence            35899999999999 8889999999999999763                    111  1  112233366888999999


Q ss_pred             Cce-eee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeec
Q psy4577         132 DVT-RVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQL  206 (384)
Q Consensus       132 ~~~-~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  206 (384)
                      +|. .++    ...+..||+.+..+..+-.....+.+.                                    +....+
T Consensus       268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~------------------------------------~e~FeV  311 (514)
T KOG2055|consen  268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS------------------------------------MERFEV  311 (514)
T ss_pred             CCceEEEecccceEEEEeeccccccccccCCCCcccch------------------------------------hheeEe
Confidence            998 555    444567887655443322111111000                                    011111


Q ss_pred             CCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q psy4577         207 PNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGE  286 (384)
Q Consensus       207 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  286 (384)
                      ++++..++...-.+-+.+.   ....+.  ......-++.|..++|+.+++ .|++.+.+|.|.+||++.        ..
T Consensus       312 Shd~~fia~~G~~G~I~lL---hakT~e--li~s~KieG~v~~~~fsSdsk-~l~~~~~~GeV~v~nl~~--------~~  377 (514)
T KOG2055|consen  312 SHDSNFIAIAGNNGHIHLL---HAKTKE--LITSFKIEGVVSDFTFSSDSK-ELLASGGTGEVYVWNLRQ--------NS  377 (514)
T ss_pred             cCCCCeEEEcccCceEEee---hhhhhh--hhheeeeccEEeeEEEecCCc-EEEEEcCCceEEEEecCC--------cc
Confidence            1111111111111000000   000001  111223468899999999997 555556689999999973        32


Q ss_pred             ccceeeecCCC-CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         287 CHPDLRLRGHQ-KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       287 ~~~~~~~~~h~-~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                      +  +..+.... -.-++++.++++ .|||+||..|.|.|||.++... +..+.|+.++..-...|+++.|+||...++
T Consensus       378 ~--~~rf~D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~-s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA  451 (514)
T KOG2055|consen  378 C--LHRFVDDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA-STNPKPIKTVDNLTTAITSLQFNHDAQILA  451 (514)
T ss_pred             e--EEEEeecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhc-cCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence            2  33333211 134678888998 7999999999999999776421 334558888888888999999999987654

>KOG0644|consensus

Probab=99.77  E-value=2.1e-18  Score=151.38  Aligned_cols=255  Identities=18%  Similarity=0.268  Sum_probs=172.5

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .|...|. +++||+.|..++||...+              ..++....||.+.|+.++.+.+.. ++|++|.|..|++|.
T Consensus       197 ~fDrtg~-~Iitgsdd~lvKiwS~et--------------~~~lAs~rGhs~ditdlavs~~n~-~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  197 IFDRTGR-YIITGSDDRLVKIWSMET--------------ARCLASCRGHSGDITDLAVSSNNT-MIAAASNDKVIRVWR  260 (1113)
T ss_pred             eeccccc-eEeecCccceeeeeeccc--------------hhhhccCCCCccccchhccchhhh-hhhhcccCceEEEEe
Confidence            4667786 799999999999999776              477888899999999999998887 889999999999998


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeecceeeeeccc-cccccceeecccc
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKN-TPFLYDLVMTHAL  160 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~v~~w~~~-~~~~~~~~~~~~~  160 (384)
                      +.++.                        ...++.||  .+.|++++|+|--..-.||++++||.+ .+..|-       
T Consensus       261 l~~~~------------------------pvsvLrgh--tgavtaiafsP~~sss~dgt~~~wd~r~~~~~y~-------  307 (1113)
T KOG0644|consen  261 LPDGA------------------------PVSVLRGH--TGAVTAIAFSPRASSSDDGTCRIWDARLEPRIYV-------  307 (1113)
T ss_pred             cCCCc------------------------hHHHHhcc--ccceeeeccCccccCCCCCceEeccccccccccC-------
Confidence            87751                        23466777  788999999998877779999999986 222211       


Q ss_pred             cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEE
Q psy4577         161 EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK  240 (384)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  240 (384)
                                |.-......                   ..+.++.+-..+..+....-|.+.+.+          .....
T Consensus       308 ----------prp~~~~~~-------------------~~~~s~~~~~~~~~f~Tgs~d~ea~n~----------e~~~l  348 (1113)
T KOG0644|consen  308 ----------PRPLKFTEK-------------------DLVDSILFENNGDRFLTGSRDGEARNH----------EFEQL  348 (1113)
T ss_pred             ----------CCCCCcccc-------------------cceeeeeccccccccccccCCcccccc----------hhhHh
Confidence                      000000000                   011111111122222222233322222          11111


Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      ..+...+.-+.++.+-..+.+++-.+-.+.+|++.        .+.  ..+.+.+|...+..+.++|.+++.-.+++.||
T Consensus       349 ~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~--------~g~--l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dg  418 (1113)
T KOG0644|consen  349 AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY--------TGQ--LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDG  418 (1113)
T ss_pred             hhhccceEEEeccccccccceeeeeeeEeeeeecc--------cch--hhhhhcccccceeeeeecCCCcHhhhhccCCC
Confidence            12223333333333333466677777888899985        343  34578899999999999999888889999999


Q ss_pred             cEEEEecCCCCCCCccccceeeee-ccCCcEeEEEEecCCCcc
Q psy4577         321 TICLWDINATPKENRVIDAKTIFT-GHTAVVELELIERLTKKA  362 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~  362 (384)
                      ...|||+-.+.       +++.+. +| +.+.+-+||++|...
T Consensus       419 st~iwdi~eg~-------pik~y~~gh-~kl~d~kFSqdgts~  453 (1113)
T KOG0644|consen  419 STIIWDIWEGI-------PIKHYFIGH-GKLVDGKFSQDGTSI  453 (1113)
T ss_pred             ceEeeecccCC-------cceeeeccc-ceeeccccCCCCceE
Confidence            99999999887       655554 44 556678999998643

>KOG0290|consensus

Probab=99.77  E-value=5.8e-17  Score=125.67  Aligned_cols=201  Identities=17%  Similarity=0.321  Sum_probs=137.0

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .|+.-++++|.++|-|.+..|||+++.           ....+...+-+|...|.+++|...+..++||+|.||.+|++|
T Consensus       157 DWne~dp~~igtSSiDTTCTiWdie~~-----------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD  225 (364)
T KOG0290|consen  157 DWNEVDPNLIGTSSIDTTCTIWDIETG-----------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD  225 (364)
T ss_pred             ccccCCcceeEeecccCeEEEEEEeec-----------cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence            466677789999999999999999872           112455667789999999999998888999999999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeecceeeeeccccccccceeeccccc
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALE  161 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~  161 (384)
                      ++..+.            ..-+++...+           ..+..-++|+++....               ..++..    
T Consensus       226 LR~leH------------STIIYE~p~~-----------~~pLlRLswnkqDpny---------------mATf~~----  263 (364)
T KOG0290|consen  226 LRSLEH------------STIIYEDPSP-----------STPLLRLSWNKQDPNY---------------MATFAM----  263 (364)
T ss_pred             eccccc------------ceEEecCCCC-----------CCcceeeccCcCCchH---------------Hhhhhc----
Confidence            976421            1112222211           1122334444433211               111000    


Q ss_pred             ccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEe
Q psy4577         162 WPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKI  241 (384)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  241 (384)
                                                       ..+.+.|..+.++                          ..++..+.
T Consensus       264 ---------------------------------dS~~V~iLDiR~P--------------------------~tpva~L~  284 (364)
T KOG0290|consen  264 ---------------------------------DSNKVVILDIRVP--------------------------CTPVARLR  284 (364)
T ss_pred             ---------------------------------CCceEEEEEecCC--------------------------Ccceehhh
Confidence                                             1233445454432                          12356677


Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      +|.+.|++|+|.|.....++|+++|..+.|||+.+...+    ....|+.... -.+.|+.+.|++..+.+|+.+...
T Consensus       285 ~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~----~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  285 NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE----NGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             cCcccccceEecCCCCceeeecCCcceEEEEeccccccc----CCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence            999999999999998889999999999999999765431    2223444444 456899999998777888887653

>KOG0771|consensus

Probab=99.77  E-value=9.7e-18  Score=136.41  Aligned_cols=207  Identities=18%  Similarity=0.280  Sum_probs=133.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+++|. .||+|+.||++|||++..              ...+.....|.+.|.+|.|+|||+ +|++.+.| ..+||
T Consensus       150 vaf~~~gs-~latgg~dg~lRv~~~Ps--------------~~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW  212 (398)
T KOG0771|consen  150 VAFNGDGS-KLATGGTDGTLRVWEWPS--------------MLTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVW  212 (398)
T ss_pred             EEEcCCCC-EeeeccccceEEEEecCc--------------chhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEE
Confidence            57899997 799999999999999765              234445567888999999999999 89999999 99999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeecceeeeeccccccccceeecccc
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHAL  160 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~  160 (384)
                      +++++..+.                ..++.-        .......+.|+.++..   ..+++....          .+ 
T Consensus       213 ~~~~g~~~a----------------~~t~~~--------k~~~~~~cRF~~d~~~---~~l~laa~~----------~~-  254 (398)
T KOG0771|consen  213 SVNTGAALA----------------RKTPFS--------KDEMFSSCRFSVDNAQ---ETLRLAASQ----------FP-  254 (398)
T ss_pred             EeccCchhh----------------hcCCcc--------cchhhhhceecccCCC---ceEEEEEec----------CC-
Confidence            998862221                111100        0111224555544321   111110000          00 


Q ss_pred             cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEE
Q psy4577         161 EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK  240 (384)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  240 (384)
                                                         ...+....+.           .|+..           ........
T Consensus       255 -----------------------------------~~~v~~~~~~-----------~w~~~-----------~~l~~~~~  277 (398)
T KOG0771|consen  255 -----------------------------------GGGVRLCDIS-----------LWSGS-----------NFLRLRKK  277 (398)
T ss_pred             -----------------------------------CCceeEEEee-----------eeccc-----------cccchhhh
Confidence                                               0000001111           11110           00111222


Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      ..-...|.+++.+++|+ ++|.|+.||.|-|++...        -+ .....-+.|...|+.+.|+|+. +++++-+.|.
T Consensus       278 ~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~--------lq-~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~  346 (398)
T KOG0771|consen  278 IKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKS--------LQ-RLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDN  346 (398)
T ss_pred             hhccCcceeEEEcCCCc-EEEEeccCCcEEEEEece--------ee-eeEeehhhheeeeeeEEEcCCc-CcccccccCC
Confidence            23345799999999995 999999999999999852        11 1233456799999999999996 8999999999


Q ss_pred             cEEEEecCCC
Q psy4577         321 TICLWDINAT  330 (384)
Q Consensus       321 ~i~iwd~~~~  330 (384)
                      .+.|-.+.-.
T Consensus       347 ~~~v~~l~vd  356 (398)
T KOG0771|consen  347 EAAVTKLAVD  356 (398)
T ss_pred             ceeEEEEeec
Confidence            9999988764

>KOG1034|consensus

Probab=99.76  E-value=8.8e-18  Score=132.28  Aligned_cols=70  Identities=13%  Similarity=0.377  Sum_probs=61.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEe---cccccceEEEEEccCCCcEEEEEecCCeE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH---GGHTAKISDFSWNPNEPWVICSVSEDNIM   77 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~gh~~~V~~l~~~~~~~~~l~s~s~D~~i   77 (384)
                      ++|+|+.++||++||.|.+|++|++++              ..++..+   .||.+.|.++.|+++|. .|+|++.|.++
T Consensus       141 ik~~p~~~qlvls~SkD~svRlwnI~~--------------~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhsl  205 (385)
T KOG1034|consen  141 IKFHPDRPQLVLSASKDHSVRLWNIQT--------------DVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSL  205 (385)
T ss_pred             hhcCCCCCcEEEEecCCceEEEEeccC--------------CeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceE
Confidence            579999999999999999999999997              3444444   57999999999999999 78899999999


Q ss_pred             EEEEcccC
Q psy4577          78 QILSVVCV   85 (384)
Q Consensus        78 ~vwd~~~~   85 (384)
                      ++|++...
T Consensus       206 k~W~l~~~  213 (385)
T KOG1034|consen  206 KLWRLNVK  213 (385)
T ss_pred             EEEecChh
Confidence            99999754

>KOG1274|consensus

Probab=99.76  E-value=1.2e-16  Score=141.98  Aligned_cols=227  Identities=14%  Similarity=0.130  Sum_probs=146.6

Q ss_pred             cccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEE
Q psy4577          49 GGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ  128 (384)
Q Consensus        49 ~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  128 (384)
                      .+|+..-+.|+|.|+|. +|++|+.||.|++|+.......                   .+.+    .-+  ...+.+++
T Consensus        10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~-------------------P~ti----~~~--g~~v~~ia   63 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEE-------------------PETI----DIS--GELVSSIA   63 (933)
T ss_pred             hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccC-------------------Cchh----hcc--CceeEEEe
Confidence            57999999999999999 8889999999999987653100                   0001    000  22333333


Q ss_pred             EecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEe
Q psy4577         129 WLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASV  204 (384)
Q Consensus       129 ~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  204 (384)
                      -.  +..++    +++|.++....+....++......                                       +..+
T Consensus        64 ~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp---------------------------------------~r~~  102 (933)
T KOG1274|consen   64 CY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLP---------------------------------------IRDL  102 (933)
T ss_pred             ec--ccceEEeeccceEEEeeCCCCCccceeeeeecc---------------------------------------ceEE
Confidence            32  22333    677777766555444443333222                                       1222


Q ss_pred             ecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCC
Q psy4577         205 QLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPN  284 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  284 (384)
                      .+..++..+.+...|...+.....    ..-....+.+|.++|.++.|+|.+ ++||+.+.||.|+|||+..        
T Consensus       103 ~v~g~g~~iaagsdD~~vK~~~~~----D~s~~~~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~--------  169 (933)
T KOG1274|consen  103 AVSGSGKMIAAGSDDTAVKLLNLD----DSSQEKVLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQD--------  169 (933)
T ss_pred             EEecCCcEEEeecCceeEEEEecc----ccchheeecccCCceeeeeEcCCC-CEEEEEecCceEEEEEccc--------
Confidence            222222222222223222221110    111245567999999999999999 5999999999999999973        


Q ss_pred             CCccceeeecC-------C-CCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec--cCCcEeEEE
Q psy4577         285 GECHPDLRLRG-------H-QKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG--HTAVVELEL  354 (384)
Q Consensus       285 ~~~~~~~~~~~-------h-~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~~~  354 (384)
                      +....  ++.+       - ...+..++|+|++ +.|+..+.|+.|++|+..+..       ...+|+.  |...+.+++
T Consensus       170 ~~~~~--tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we-------~~f~Lr~~~~ss~~~~~~  239 (933)
T KOG1274|consen  170 GILSK--TLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWE-------LQFKLRDKLSSSKFSDLQ  239 (933)
T ss_pred             chhhh--hcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCce-------eheeecccccccceEEEE
Confidence            22211  1211       1 3467789999998 788899999999999999987       6666654  455599999


Q ss_pred             EecCCCccccc
Q psy4577         355 IERLTKKADPV  365 (384)
Q Consensus       355 ~sp~~~~~~~~  365 (384)
                      |+|.|..+++.
T Consensus       240 wsPnG~YiAAs  250 (933)
T KOG1274|consen  240 WSPNGKYIAAS  250 (933)
T ss_pred             EcCCCcEEeee
Confidence            99999988876

>KOG0639|consensus

Probab=99.76  E-value=1.7e-17  Score=137.89  Aligned_cols=260  Identities=15%  Similarity=0.177  Sum_probs=176.0

Q ss_pred             CCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcc
Q psy4577           4 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVV   83 (384)
Q Consensus         4 sp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~   83 (384)
                      |...+ .+.||+ -|.|+|||+...+..        .+-..+-.+ ....-|.++...|||+ .|++|+.-.++.|||+.
T Consensus       428 S~~tr-hVyTgG-kgcVKVWdis~pg~k--------~PvsqLdcl-~rdnyiRSckL~pdgr-tLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  428 SNPTR-HVYTGG-KGCVKVWDISQPGNK--------SPVSQLDCL-NRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDLA  495 (705)
T ss_pred             cCCcc-eeEecC-CCeEEEeeccCCCCC--------Ccccccccc-CcccceeeeEecCCCc-eEEeccccceeeeeecc
Confidence            33343 477776 577999999864210        011111111 1245789999999999 66699999999999997


Q ss_pred             cCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeeccc
Q psy4577          84 CVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHA  159 (384)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~  159 (384)
                      ....              ++ +..       +..  ..-..++++.+||.+..+    ||.|++||+++..+...+.++.
T Consensus       496 apTp--------------ri-kae-------lts--sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht  551 (705)
T KOG0639|consen  496 APTP--------------RI-KAE-------LTS--SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT  551 (705)
T ss_pred             CCCc--------------ch-hhh-------cCC--cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence            6411              00 100       000  012456788999987766    9999999999988877766665


Q ss_pred             ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE
Q psy4577         160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI  239 (384)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  239 (384)
                      ...                                       .++.++.++..+-....|...+.|+..   .++.  ..
T Consensus       552 DGa---------------------------------------scIdis~dGtklWTGGlDntvRcWDlr---egrq--lq  587 (705)
T KOG0639|consen  552 DGA---------------------------------------SCIDISKDGTKLWTGGLDNTVRCWDLR---EGRQ--LQ  587 (705)
T ss_pred             CCc---------------------------------------eeEEecCCCceeecCCCccceeehhhh---hhhh--hh
Confidence            442                                       233344455555555556555555321   1111  11


Q ss_pred             EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      .......|.++.++|++. ++|.|-.++.+.|-..+         +.  ..+.+.-|...|.++.|.+-| ++++|.+.|
T Consensus       588 qhdF~SQIfSLg~cP~~d-WlavGMens~vevlh~s---------kp--~kyqlhlheScVLSlKFa~cG-kwfvStGkD  654 (705)
T KOG0639|consen  588 QHDFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTS---------KP--EKYQLHLHESCVLSLKFAYCG-KWFVSTGKD  654 (705)
T ss_pred             hhhhhhhheecccCCCcc-ceeeecccCcEEEEecC---------Cc--cceeecccccEEEEEEecccC-ceeeecCch
Confidence            113357799999999995 99999999999887763         22  234677899999999999999 899999999


Q ss_pred             CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccc
Q psy4577         320 HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADP  364 (384)
Q Consensus       320 g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  364 (384)
                      .-+..|...-+.       .+...+ -.++|.+++.|-+++.+.+
T Consensus       655 nlLnawrtPyGa-------siFqsk-E~SsVlsCDIS~ddkyIVT  691 (705)
T KOG0639|consen  655 NLLNAWRTPYGA-------SIFQSK-ESSSVLSCDISFDDKYIVT  691 (705)
T ss_pred             hhhhhccCcccc-------ceeecc-ccCcceeeeeccCceEEEe
Confidence            999999988776       444333 4577999999998887544

>KOG0303|consensus

Probab=99.76  E-value=1e-17  Score=135.03  Aligned_cols=105  Identities=16%  Similarity=0.231  Sum_probs=85.9

Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      +..+.+|...|.-|+|+|.-.+.|++++.|.+|.+||..        ++  +.+.++. |..-|+++.|+.|| .+|+|.
T Consensus       124 vv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~--------tg--eali~l~-hpd~i~S~sfn~dG-s~l~Tt  191 (472)
T KOG0303|consen  124 VVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG--------TG--EALITLD-HPDMVYSMSFNRDG-SLLCTT  191 (472)
T ss_pred             eEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc--------CC--ceeeecC-CCCeEEEEEeccCC-ceeeee
Confidence            445568999999999999988899999999999999985        33  3455666 99999999999999 799999


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCc-EeEEEEecCCC
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAV-VELELIERLTK  360 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~~~  360 (384)
                      +.|..|+|||.++++       .+..-.+|.+. -.-+.|=-++.
T Consensus       192 ckDKkvRv~dpr~~~-------~v~e~~~heG~k~~Raifl~~g~  229 (472)
T KOG0303|consen  192 CKDKKVRVIDPRRGT-------VVSEGVAHEGAKPARAIFLASGK  229 (472)
T ss_pred             cccceeEEEcCCCCc-------EeeecccccCCCcceeEEeccCc
Confidence            999999999999998       77777777653 22344544554

>KOG4328|consensus

Probab=99.76  E-value=3e-17  Score=134.74  Aligned_cols=209  Identities=12%  Similarity=0.107  Sum_probs=143.4

Q ss_pred             EecccccceEEEEEccCCC-cEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCee
Q psy4577          47 IHGGHTAKISDFSWNPNEP-WVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSL  125 (384)
Q Consensus        47 ~~~gh~~~V~~l~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  125 (384)
                      +..-|.+.|++++|+|... .++|+|+.-|+|-+||+.+.+                      +.......++.+..+|.
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~----------------------~d~d~v~~f~~hs~~Vs  238 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE----------------------KDKDGVYLFTPHSGPVS  238 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC----------------------CccCceEEeccCCcccc
Confidence            3445788999999999876 688899999999999996321                      11112333444577899


Q ss_pred             EEEEecCceeee-----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEE
Q psy4577         126 TAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLL  200 (384)
Q Consensus       126 ~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (384)
                      ++.|+|.....+     ||+++.-|+.+...-..+..                                           
T Consensus       239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-------------------------------------------  275 (498)
T KOG4328|consen  239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL-------------------------------------------  275 (498)
T ss_pred             ceEecCCChhheeeeccCceeeeeeecchhhHHHhhc-------------------------------------------
Confidence            999999874322     78877644432211110000                                           


Q ss_pred             EEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q psy4577         201 IASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK  280 (384)
Q Consensus       201 i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~  280 (384)
                                                              ......+.++.|+...+ .++.+..=|...+||++...  
T Consensus       276 ----------------------------------------~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~--  312 (498)
T KOG4328|consen  276 ----------------------------------------DTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDG--  312 (498)
T ss_pred             ----------------------------------------CccceeeeeccccCCCc-cEEEeecccceEEEEeecCC--
Confidence                                                    00112345667777775 44555556689999998422  


Q ss_pred             CCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577         281 PDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK  360 (384)
Q Consensus       281 ~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  360 (384)
                           .  ....+.-|...|.+|+++|-.+.+|||||.|++++|||++.......   ++.....|..+|.++.|||++-
T Consensus       313 -----s--~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s---p~lst~~HrrsV~sAyFSPs~g  382 (498)
T KOG4328|consen  313 -----S--EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS---PFLSTLPHRRSVNSAYFSPSGG  382 (498)
T ss_pred             -----c--cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC---cceecccccceeeeeEEcCCCC
Confidence                 1  13345668889999999999889999999999999999998653221   2333446999999999999999


Q ss_pred             cccccccccccce
Q psy4577         361 KADPVCTLEKAKK  373 (384)
Q Consensus       361 ~~~~~c~~~~~~~  373 (384)
                      .+.+.|-.+..+.
T Consensus       383 tl~TT~~D~~IRv  395 (498)
T KOG4328|consen  383 TLLTTCQDNEIRV  395 (498)
T ss_pred             ceEeeccCCceEE
Confidence            9888886655443

>KOG1007|consensus

Probab=99.74  E-value=9.7e-17  Score=124.36  Aligned_cols=224  Identities=15%  Similarity=0.186  Sum_probs=148.2

Q ss_pred             CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecC-------CeEEEEEcccCCCcc
Q psy4577          17 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED-------NIMQILSVVCVEPFD   89 (384)
Q Consensus        17 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D-------~~i~vwd~~~~~~~~   89 (384)
                      |++|.+-++..++           ..-...++..|.+.|..|+=+|..+.+|+|+-.|       ..+.||.+.......
T Consensus        39 dNqVhll~~d~e~-----------s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S  107 (370)
T KOG1007|consen   39 DNQVHLLRLDSEG-----------SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS  107 (370)
T ss_pred             cceeEEEEecCcc-----------chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence            6778887776532           1123345567889999999999988888887543       245677775431100


Q ss_pred             chhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceeeccccccccee
Q psy4577          90 DAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMTHALEWPSLT  166 (384)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~~  166 (384)
                      .          ...|+.     ...+..- .-+.+.++.|.|++..++   +..+.+|++........            
T Consensus       108 ~----------~~tlE~-----v~~Ldte-avg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~va------------  159 (370)
T KOG1007|consen  108 N----------SSTLEC-----VASLDTE-AVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVA------------  159 (370)
T ss_pred             c----------cchhhH-----hhcCCHH-HhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchhe------------
Confidence            0          000000     0011100 123678999999987766   78888887754322100            


Q ss_pred             eeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCc
Q psy4577         167 AQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGE  246 (384)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (384)
                                                          .+.                               ......+...
T Consensus       160 ------------------------------------ev~-------------------------------ss~s~e~~~~  172 (370)
T KOG1007|consen  160 ------------------------------------EVL-------------------------------SSESAEMRHS  172 (370)
T ss_pred             ------------------------------------eec-------------------------------ccccccccce
Confidence                                                000                               0000013445


Q ss_pred             eEEEEEcC--CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         247 VNRARYMP--QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       247 v~~v~~~p--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      .++-+|+|  ++ +.+++. .|++++.||+|...         +....-..|...|..+.|+|+.+.+|+||+.||.|+|
T Consensus       173 ftsg~WspHHdg-nqv~tt-~d~tl~~~D~RT~~---------~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvri  241 (370)
T KOG1007|consen  173 FTSGAWSPHHDG-NQVATT-SDSTLQFWDLRTMK---------KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRI  241 (370)
T ss_pred             ecccccCCCCcc-ceEEEe-CCCcEEEEEccchh---------hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEE
Confidence            67778888  45 577774 58999999998321         1222345688899999999998789999999999999


Q ss_pred             EecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         325 WDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       325 wd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                      ||.+..+.      +++++.+|+..|++|.|+|...++.
T Consensus       242 WD~R~tk~------pv~el~~HsHWvW~VRfn~~hdqLi  274 (370)
T KOG1007|consen  242 WDTRKTKF------PVQELPGHSHWVWAVRFNPEHDQLI  274 (370)
T ss_pred             EeccCCCc------cccccCCCceEEEEEEecCccceEE
Confidence            99998764      9999999999999999999887554

>KOG2048|consensus

Probab=99.73  E-value=6.7e-15  Score=126.82  Aligned_cols=128  Identities=19%  Similarity=0.181  Sum_probs=86.5

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      +.+|.+. .++.|+.||.+..++....            .-+....+.-.++.|.+++|+|++. .|++|+.||.|++||
T Consensus       117 ai~p~~~-~l~IgcddGvl~~~s~~p~------------~I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~Iriwd  182 (691)
T KOG2048|consen  117 AINPENT-ILAIGCDDGVLYDFSIGPD------------KITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDGVIRIWD  182 (691)
T ss_pred             EeCCccc-eEEeecCCceEEEEecCCc------------eEEEEeecccccceEEEEEecCCcc-EEEecccCceEEEEE
Confidence            5678886 7999999997666666531            1223334455578999999999999 778999999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceeecc
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMTH  158 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~~  158 (384)
                      +..+...             .+-......+     ......-|+++.|..++..+.   .|+|++||....++.+....+
T Consensus       183 ~~~~~t~-------------~~~~~~~d~l-----~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h  244 (691)
T KOG2048|consen  183 VKSGQTL-------------HIITMQLDRL-----SKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCH  244 (691)
T ss_pred             cCCCceE-------------EEeeeccccc-----ccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhh
Confidence            9876321             1111110000     000123377999998888776   799999999887776555444


Q ss_pred             ccc
Q psy4577         159 ALE  161 (384)
Q Consensus       159 ~~~  161 (384)
                      ..+
T Consensus       245 ~ad  247 (691)
T KOG2048|consen  245 DAD  247 (691)
T ss_pred             hcc
Confidence            444

>KOG0322|consensus

Probab=99.72  E-value=2.2e-16  Score=120.90  Aligned_cols=112  Identities=13%  Similarity=0.116  Sum_probs=88.4

Q ss_pred             EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      ...|+.+|.++.|.+.-. .=++|+.+..+..|++...      .+.........--+-.|..+..-||+ +.|||++.|
T Consensus       201 ~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s------~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD  272 (323)
T KOG0322|consen  201 NASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHS------TGSLQIRKEITLKNPGVSGVRIRPDG-KILATAGWD  272 (323)
T ss_pred             hhhccCcceeeeechhhc-CCcCCCccccceeeeeccc------cCcccccceEEecCCCccceEEccCC-cEEeecccC
Confidence            346999999999998652 4577888889999998642      12222222222223458889999998 899999999


Q ss_pred             CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         320 HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       320 g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      ++||||+.++.+       ++..++.|++.|++++|+|+.+.+++..
T Consensus       273 ~RiRVyswrtl~-------pLAVLkyHsagvn~vAfspd~~lmAaas  312 (323)
T KOG0322|consen  273 HRIRVYSWRTLN-------PLAVLKYHSAGVNAVAFSPDCELMAAAS  312 (323)
T ss_pred             CcEEEEEeccCC-------chhhhhhhhcceeEEEeCCCCchhhhcc
Confidence            999999999999       9999999999999999999987766553

>KOG1587|consensus

Probab=99.71  E-value=1e-15  Score=134.93  Aligned_cols=262  Identities=13%  Similarity=0.097  Sum_probs=157.2

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCc-EEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-VICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~-~l~s~s~D~~i~v   79 (384)
                      ++|+|..+++||.|+.+|+|.+||+...+..        .+..+-.....|..+|+.+.|-.+... -++|+|.||.|..
T Consensus       248 ~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~--------~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~  319 (555)
T KOG1587|consen  248 LKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT--------PPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS  319 (555)
T ss_pred             EEeccCCcceEEeeccCceEEEEEccCCCCC--------CCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence            4689999999999999999999999864311        012233334579999999999765442 2679999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceee--e---cceeeeecccccc-cc-
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRV--I---NEEYKIWKKNTPF-LY-  152 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~---d~~v~~w~~~~~~-~~-  152 (384)
                      |+++.-..-......   ....+  +..         .......+.++.|.+.....  +   .|.|..-...+.. .. 
T Consensus       320 W~~~~l~~P~e~~~~---~~~~~--~~~---------~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~  385 (555)
T KOG1587|consen  320 WDTDMLSLPVEGLLL---ESKKH--KGQ---------QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE  385 (555)
T ss_pred             eeccccccchhhccc---ccccc--ccc---------ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence            987543110000000   00000  000         00112346678888765332  2   3443321110000 00 


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                      .....+                                 ..-..+...+..+..++-...+.....|-..++|....   
T Consensus       386 ~~~~~~---------------------------------~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~---  429 (555)
T KOG1587|consen  386 VSYKGH---------------------------------STFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV---  429 (555)
T ss_pred             cccccc---------------------------------ccccccCcceEeeecCCCccceeeeeccceeEeccccC---
Confidence            000000                                 00001112344444444444444444455555542210   


Q ss_pred             CceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCe
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGY  312 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~  312 (384)
                      ...++.....+...|++++|||..+.+|+++..||.|.|||+..        ....|+.+..-+....+.+.|++.| +.
T Consensus       430 ~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~--------~~~~Pv~s~~~~~~~l~~~~~s~~g-~~  500 (555)
T KOG1587|consen  430 IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ--------DDEEPVLSQKVCSPALTRVRWSPNG-KL  500 (555)
T ss_pred             CCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc--------cccCCcccccccccccceeecCCCC-cE
Confidence            22334444456677999999999888999999999999999984        4445666666666778889999998 79


Q ss_pred             EEEeeCCCcEEEEecCC
Q psy4577         313 LLSASDDHTICLWDINA  329 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~  329 (384)
                      |+.|...|++.+|++..
T Consensus       501 lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  501 LAVGDANGTTHILKLSE  517 (555)
T ss_pred             EEEecCCCcEEEEEcCc
Confidence            99999999999999964

>KOG1009|consensus

Probab=99.70  E-value=5.9e-16  Score=125.43  Aligned_cols=117  Identities=23%  Similarity=0.424  Sum_probs=96.3

Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC---CCCC---CCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPS---KPDP---NGECHPDLRLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~---~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                      ..|...|+++.|+|+|. +||+|+++|.|.+|-......   +.+.   .........+.+|...|..++|+|++ .+++
T Consensus        62 s~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~  139 (434)
T KOG1009|consen   62 SRHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLV  139 (434)
T ss_pred             cCCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceee
Confidence            46889999999999995 999999999999997652110   0000   11133445788999999999999998 8999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      +++.|.++++||+..++       .+..+.+|..-|..++|-|.+...++-.
T Consensus       140 s~s~dns~~l~Dv~~G~-------l~~~~~dh~~yvqgvawDpl~qyv~s~s  184 (434)
T KOG1009|consen  140 SGSVDNSVRLWDVHAGQ-------LLAILDDHEHYVQGVAWDPLNQYVASKS  184 (434)
T ss_pred             eeeccceEEEEEeccce-------eEeeccccccccceeecchhhhhhhhhc
Confidence            99999999999999998       9999999999999999999888666553

>KOG0649|consensus

Probab=99.70  E-value=7.1e-15  Score=111.44  Aligned_cols=227  Identities=16%  Similarity=0.140  Sum_probs=133.1

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      +|+|.++ +|+.|..+|+|.+..++.....    .+++.....+...++|.++|+.++|+.+   +|++|+ ||.|+-|.
T Consensus        17 a~sp~~~-~l~agn~~G~iav~sl~sl~s~----sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   17 AISPSKQ-YLFAGNLFGDIAVLSLKSLDSG----SAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGG-DGLVYGWE   87 (325)
T ss_pred             hhCCcce-EEEEecCCCeEEEEEehhhhcc----ccCCCCCcceeeccccCCCeeeeeeehh---heeecc-CceEEEee
Confidence            5899997 8999999999999998753211    1111222344555899999999999933   565655 59999998


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~  157 (384)
                      -......         ...-.+|+...|+-..    ...--.|.++...|....++    |+.+..||+.+         
T Consensus        88 W~E~~es---------~~~K~lwe~~~P~~~~----~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~---------  145 (325)
T KOG0649|consen   88 WNEEEES---------LATKRLWEVKIPMQVD----AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED---------  145 (325)
T ss_pred             ehhhhhh---------ccchhhhhhcCccccC----cccCCccceeEeccCCCcEEEecCCeEEEEEEecC---------
Confidence            7543110         1222344443332100    00011234444444433222    22222222211         


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI  237 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  237 (384)
                                                                                                 +++ .
T Consensus       146 ---------------------------------------------------------------------------G~i-~  149 (325)
T KOG0649|consen  146 ---------------------------------------------------------------------------GRI-Q  149 (325)
T ss_pred             ---------------------------------------------------------------------------CEE-E
Confidence                                                                                       222 3


Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcccee-------eecCCC-CceEEEEeCCCC
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDL-------RLRGHQ-KEGYGLSWNPSL  309 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~h~-~~i~~~~~s~~~  309 (384)
                      ..+.+|.+.|.++.--.... .+++|++||++||||++.        +.+..+.       .++.|- .+|-+++-+.| 
T Consensus       150 r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt--------~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-  219 (325)
T KOG0649|consen  150 REYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKT--------QKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-  219 (325)
T ss_pred             EEEcCCcceeeeeeecccCc-ceeecCCCccEEEEeccc--------cceeEEeccccChhhcCcccCceeEEEeccCc-
Confidence            44568999999998744443 688999999999999983        3322221       123333 36778877644 


Q ss_pred             CCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577         310 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIE  356 (384)
Q Consensus       310 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  356 (384)
                        +|+.|+. ..+.+|++++.+       +..++. -..+|..+.|-
T Consensus       220 --WlvCGgG-p~lslwhLrsse-------~t~vfp-ipa~v~~v~F~  255 (325)
T KOG0649|consen  220 --WLVCGGG-PKLSLWHLRSSE-------STCVFP-IPARVHLVDFV  255 (325)
T ss_pred             --eEEecCC-CceeEEeccCCC-------ceEEEe-cccceeEeeee
Confidence              7776654 589999999987       555553 22334444443

>KOG0303|consensus

Probab=99.70  E-value=5.9e-17  Score=130.70  Aligned_cols=121  Identities=25%  Similarity=0.402  Sum_probs=107.7

Q ss_pred             EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      ..+|.++|..++|+|.+.+.+||||+|.+|.||.+......   ....+|+..+.||...|--++|+|.-.+.|+|+|.|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~---~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT---RDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccc---cCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            35899999999999988889999999999999999865544   233467889999999999999999877899999999


Q ss_pred             CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccccccc
Q psy4577         320 HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKA  371 (384)
Q Consensus       320 g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~  371 (384)
                      .+|.+||+.++.       .+.++. |..-|+++.|+-+|..+.++|-..+.
T Consensus       154 n~v~iWnv~tge-------ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkv  197 (472)
T KOG0303|consen  154 NTVSIWNVGTGE-------ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKV  197 (472)
T ss_pred             ceEEEEeccCCc-------eeeecC-CCCeEEEEEeccCCceeeeeccccee
Confidence            999999999998       777787 99999999999999999999976544

>KOG4227|consensus

Probab=99.69  E-value=2.7e-15  Score=121.36  Aligned_cols=288  Identities=13%  Similarity=0.129  Sum_probs=157.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-ccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      ++||.+++ +||+|+.|..++||++...        .....++.+.... .|.+.|.||+|..... ++.+|+.+++|.+
T Consensus        62 lqFS~N~~-~L~SGGDD~~~~~W~~de~--------~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   62 LQFSHNDR-FLASGGDDMHGRVWNVDEL--------MVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTVIK  131 (609)
T ss_pred             eeeccCCe-EEeecCCcceeeeechHHH--------HhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcceeEe
Confidence            57898886 8999999999999998641        1111123333322 3568999999998877 7889999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccc-cce
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFL-YDL  154 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~-~~~  154 (384)
                      -|+++.+.             +.++..+..           .+.|+.+.-+|..+.++    ++.|.+||.+.... ...
T Consensus       132 HDiEt~qs-------------i~V~~~~~~-----------~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~  187 (609)
T KOG4227|consen  132 HDIETKQS-------------IYVANENNN-----------RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL  187 (609)
T ss_pred             eeccccee-------------eeeecccCc-----------ccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence            99988632             222222211           34677788888766655    88899999865431 111


Q ss_pred             eecccccccceeeeeccCCCC-----CCCCccceeEEEEe--------eeccCCCCeEEEEEeecCCCCcccccccccCc
Q psy4577         155 VMTHALEWPSLTAQWLPDVTR-----PEGKDYSIHRLILG--------THTSDEQNHLLIASVQLPNEDAQFDASNYDTD  221 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~  221 (384)
                      +...+....-.++.|.|....     .......+......        ...+-.+....-....+++.+.++....-..-
T Consensus       188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~  267 (609)
T KOG4227|consen  188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC  267 (609)
T ss_pred             eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC
Confidence            111111111123334433220     00000000000000        00000000001122223333333332211000


Q ss_pred             CCCCCCccCCCCceeEEEEeec-------CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCC--CC--------
Q psy4577         222 KGDFGGFGSVSGKIEIEIKINH-------EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPD--PN--------  284 (384)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~--------  284 (384)
                      .-.++.   ...+..+.+ ..|       ...+.+++|--+.  .+++|+++-.|++|.+......--  +-        
T Consensus       268 P~~~D~---~S~R~~V~k-~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~  341 (609)
T KOG4227|consen  268 PLYFDF---ISQRCFVLK-SDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMP  341 (609)
T ss_pred             CEEeee---ecccceeEe-ccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCccccCccccCcchhhCc
Confidence            000000   001111111 122       2356677776554  599999999999999864332100  00        


Q ss_pred             ---CCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCC
Q psy4577         285 ---GECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINA  329 (384)
Q Consensus       285 ---~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~  329 (384)
                         .....+..++||..-++.+.|+|.. ++|++.+..+.++||.-..
T Consensus       342 ~~~~i~~~~~VLrGHRSv~NQVRF~~H~-~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  342 SEIFIEKELTVLRGHRSVPNQVRFSQHN-NLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             hhheecceeEEEecccccccceeecCCc-ceEeccchhhheecccccc
Confidence               0123456789999999999999997 8999999999999996543

>KOG0322|consensus

Probab=99.69  E-value=1.7e-15  Score=116.11  Aligned_cols=72  Identities=22%  Similarity=0.395  Sum_probs=64.2

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      +-.|..+..-||++ ++||++-|+.||||..+        +  ..|+..+..|.+.|++++|+|+. .++|++|.|++|-
T Consensus       251 npGv~gvrIRpD~K-IlATAGWD~RiRVyswr--------t--l~pLAVLkyHsagvn~vAfspd~-~lmAaaskD~rIS  318 (323)
T KOG0322|consen  251 NPGVSGVRIRPDGK-ILATAGWDHRIRVYSWR--------T--LNPLAVLKYHSAGVNAVAFSPDC-ELMAAASKDARIS  318 (323)
T ss_pred             CCCccceEEccCCc-EEeecccCCcEEEEEec--------c--CCchhhhhhhhcceeEEEeCCCC-chhhhccCCceEE
Confidence            34688899999996 99999999999999987        3  34677889999999999999997 6999999999999


Q ss_pred             EEec
Q psy4577         324 LWDI  327 (384)
Q Consensus       324 iwd~  327 (384)
                      +|++
T Consensus       319 LWkL  322 (323)
T KOG0322|consen  319 LWKL  322 (323)
T ss_pred             eeec
Confidence            9986

>KOG1963|consensus

Probab=99.68  E-value=3.6e-15  Score=132.27  Aligned_cols=113  Identities=16%  Similarity=0.210  Sum_probs=89.3

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      .|.-.++++++||++ +++|+|..||.|.+|.--.-      +........+.-|..+|++++|+++| .+|.|||..|.
T Consensus       203 ~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~------~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~V  274 (792)
T KOG1963|consen  203 HHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGS------SDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGV  274 (792)
T ss_pred             hhcccceeEEecccc-ceEEEeccCCcEEEEecccc------ccccccceEEEecccccceeEEecCC-ceEeecccceE
Confidence            466668999999999 59999999999999964311      11222345778899999999999999 69999999999


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEK  370 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~  370 (384)
                      +.+|.+.+++++     .   |.--.++|..+.+|||+..-+.+|..+.
T Consensus       275 Lv~Wq~~T~~kq-----f---LPRLgs~I~~i~vS~ds~~~sl~~~DNq  315 (792)
T KOG1963|consen  275 LVLWQLETGKKQ-----F---LPRLGSPILHIVVSPDSDLYSLVLEDNQ  315 (792)
T ss_pred             EEEEeecCCCcc-----c---ccccCCeeEEEEEcCCCCeEEEEecCce
Confidence            999999988631     2   2234588999999999998777776443

>KOG1963|consensus

Probab=99.67  E-value=4.4e-14  Score=125.46  Aligned_cols=288  Identities=15%  Similarity=0.152  Sum_probs=159.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      +++||.++ ++|+|..||+|.+|.--...          ........+.=|.+.|++++|+++|. .|.||+..+.+.+|
T Consensus       211 ~~~spn~~-~~Aa~d~dGrI~vw~d~~~~----------~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  211 VALSPNER-YLAAGDSDGRILVWRDFGSS----------DDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLW  278 (792)
T ss_pred             EEeccccc-eEEEeccCCcEEEEeccccc----------cccccceEEEecccccceeEEecCCc-eEeecccceEEEEE
Confidence            36899997 89999999999999643210          01123344566888999999999999 56699999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      .+.+++.                  .--|.+         ..+|..+.++||+....    |.++.+-...+......+.
T Consensus       279 q~~T~~k------------------qfLPRL---------gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs  331 (792)
T KOG1963|consen  279 QLETGKK------------------QFLPRL---------GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS  331 (792)
T ss_pred             eecCCCc------------------cccccc---------CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc
Confidence            9988510                  011222         56788999999997654    8887776654333222222


Q ss_pred             ccccccc---------ceeeeeccCC--CCCCCCccceeE-----------EEEe-eecc-CC-CCeEEEEEeecCCCCc
Q psy4577         157 THALEWP---------SLTAQWLPDV--TRPEGKDYSIHR-----------LILG-THTS-DE-QNHLLIASVQLPNEDA  211 (384)
Q Consensus       157 ~~~~~~~---------~~~~~~~~~~--~~~~~~~~~~~~-----------~~~~-~~~~-~~-~~~~~i~~~~~~~~~~  211 (384)
                      +.....+         ...+...|..  ..-.+....++.           +.+. .... +. ...+.+..+..+..+.
T Consensus       332 gi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs  411 (792)
T KOG1963|consen  332 GIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS  411 (792)
T ss_pred             CccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce
Confidence            2111100         1112222211  011111111111           1111 1111 11 2233344444433322


Q ss_pred             cccccc-ccCcCCCCC-----CccCCC---Cce--eEEEEeecCCceEEEEEcCCCCc-EEEEEeCCCcEEEEecCCCCC
Q psy4577         212 QFDASN-YDTDKGDFG-----GFGSVS---GKI--EIEIKINHEGEVNRARYMPQNPC-VIATKTPSSDVLVFDYTKHPS  279 (384)
Q Consensus       212 ~~~~~~-~d~~~~~~~-----~~~~~~---~~~--~~~~~~~~~~~v~~v~~~p~~~~-~l~s~s~dg~i~iwd~~~~~~  279 (384)
                      .+.... +-......+     .+|...   ..+  ......+|...+...++.+.-+. .+++++.||.++||-+....+
T Consensus       412 ~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n  491 (792)
T KOG1963|consen  412 WMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSN  491 (792)
T ss_pred             EEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccc
Confidence            222111 100000000     011111   111  12223468877777777654433 899999999999999853322


Q ss_pred             CCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCC
Q psy4577         280 KPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINA  329 (384)
Q Consensus       280 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~  329 (384)
                      .-...........-..|..+++.++|+.||  -++++|.|++|.+||..+
T Consensus       492 ~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG--slla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  492 IYKKSSNWTCKAIGSYHKTPITALCFSQDG--SLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             cCcCccceEEeeeeccccCcccchhhcCCC--cEEEEecCCEEEEecCCC
Confidence            111111222222222488899999999998  467788899999999988

>KOG0646|consensus

Probab=99.67  E-value=8.1e-15  Score=120.97  Aligned_cols=228  Identities=11%  Similarity=0.110  Sum_probs=158.1

Q ss_pred             eCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhhe
Q psy4577          15 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEE   94 (384)
Q Consensus        15 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~   94 (384)
                      ..-..|.+|.+....+.           .....+   .++|.+++-+|+|. +|+.|...|.+.+|.+.+|..       
T Consensus        58 ~~rp~l~vw~i~k~~~~-----------~q~~v~---Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelssG~L-------  115 (476)
T KOG0646|consen   58 LKRPLLHVWEILKKDQV-----------VQYIVL---PGPVHALASSNLGY-FLLAGTISGNLYLWELSSGIL-------  115 (476)
T ss_pred             ccCccccccccCchhhh-----------hhhccc---ccceeeeecCCCce-EEEeecccCcEEEEEeccccH-------
Confidence            33457888988752210           112222   45899999999999 666777999999999988622       


Q ss_pred             eeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeec
Q psy4577          95 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWL  170 (384)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (384)
                                       ...+..|  .-+|+++.|+.||..++    ||.|.+|.+..     ++...+           
T Consensus       116 -----------------L~v~~aH--YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~-----lv~a~~-----------  160 (476)
T KOG0646|consen  116 -----------------LNVLSAH--YQSITCLKFSDDGSHIITGSKDGAVLVWLLTD-----LVSADN-----------  160 (476)
T ss_pred             -----------------HHHHHhh--ccceeEEEEeCCCcEEEecCCCccEEEEEEEe-----eccccc-----------
Confidence                             2234444  56799999999999998    89999987621     110000           


Q ss_pred             cCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEE
Q psy4577         171 PDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRA  250 (384)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v  250 (384)
                       +                                                           ....+...+..|.-+|+.+
T Consensus       161 -~-----------------------------------------------------------~~~~p~~~f~~HtlsITDl  180 (476)
T KOG0646|consen  161 -D-----------------------------------------------------------HSVKPLHIFSDHTLSITDL  180 (476)
T ss_pred             -C-----------------------------------------------------------CCccceeeeccCcceeEEE
Confidence             0                                                           0011245556788888888


Q ss_pred             EEcCCC-CcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCC
Q psy4577         251 RYMPQN-PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINA  329 (384)
Q Consensus       251 ~~~p~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~  329 (384)
                      ...+.+ .-.++|+|.|.+|++||+.        .+..  +.++. ....+.+++.+|-. +.+..|+.+|.|.+-++..
T Consensus       181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS--------~g~L--Llti~-fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~  248 (476)
T KOG0646|consen  181 QIGSGGTNARLYTASEDRTIKLWDLS--------LGVL--LLTIT-FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFK  248 (476)
T ss_pred             EecCCCccceEEEecCCceEEEEEec--------ccee--eEEEe-cCCcceeEEEcccc-cEEEecCCcceEEeeehhc
Confidence            777642 1379999999999999996        3432  22332 34579999999997 8999999999999999876


Q ss_pred             CCCCCc---------cccceeeeeccCC--cEeEEEEecCCCccccc------cccccc
Q psy4577         330 TPKENR---------VIDAKTIFTGHTA--VVELELIERLTKKADPV------CTLEKA  371 (384)
Q Consensus       330 ~~~~~~---------~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~~------c~~~~~  371 (384)
                      ......         .-..+..+.||..  .|+|++.|-||..+.+.      |.|+-.
T Consensus       249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             CCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            541111         1124666788988  99999999999877654      776543

>KOG1517|consensus

Probab=99.67  E-value=9e-15  Score=132.24  Aligned_cols=285  Identities=13%  Similarity=0.153  Sum_probs=162.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecc---cccceEEEEEc-cCCCcEEEEEecCCe
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG---HTAKISDFSWN-PNEPWVICSVSEDNI   76 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~g---h~~~V~~l~~~-~~~~~~l~s~s~D~~   76 (384)
                      +.|+|-.+ .++++...-.|+|||++..              +.+..+..   ....|+.+.+- .++..++++|+.||.
T Consensus      1070 ~~~hpf~p-~i~~ad~r~~i~vwd~e~~--------------~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1070 LKFHPFEP-QIAAADDRERIRVWDWEKG--------------RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGV 1134 (1387)
T ss_pred             eeecCCCc-eeEEcCCcceEEEEecccC--------------ceeccccCCCCCCCccceeeeecccchhheeeeccCce
Confidence            46888887 6888876778999999862              33332222   23579999884 444458889999999


Q ss_pred             EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccc
Q psy4577          77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~  152 (384)
                      ||||+-.....        ...+-+.-|..-...+    .+-  .+.-.-+.|......++    ...|++||......+
T Consensus      1135 IRIwk~y~~~~--------~~~eLVTaw~~Ls~~~----~~~--r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1135 IRIWKDYADKW--------KKPELVTAWSSLSDQL----PGA--RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred             EEEeccccccc--------CCceeEEeeccccccC----ccC--CCCCeeeehhhhCCeEEecCCeeEEEEEecccceeE
Confidence            99997533200        0001222232221111    111  11112355665554444    357899999776554


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCC-CcccccccccCcCCCCCCccCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNE-DAQFDASNYDTDKGDFGGFGSV  231 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~  231 (384)
                      .-+.....   +.                                   +..++-... +..+.+..-|+..+.|+.....
T Consensus      1201 ~diP~~s~---t~-----------------------------------vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~ 1242 (1387)
T KOG1517|consen 1201 ADIPYGSS---TL-----------------------------------VTALSADLVHGNIIAAGFADGSVRVYDRRMAP 1242 (1387)
T ss_pred             eecccCCC---cc-----------------------------------ceeecccccCCceEEEeecCCceEEeecccCC
Confidence            33222110   00                                   111110000 1112222223333333221111


Q ss_pred             CCceeEEEEeecCCc--eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC--C-ceEEEEeC
Q psy4577         232 SGKIEIEIKINHEGE--VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ--K-EGYGLSWN  306 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~--v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~--~-~i~~~~~s  306 (384)
                      .. ..+.....|+..  |..+.+.+.|-.-|++|+.||.|++||+|..        ..+.......|.  + ..+++..|
T Consensus      1243 ~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~--------~~e~~~~iv~~~~yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1243 PD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS--------SKETFLTIVAHWEYGSALTALTVH 1313 (1387)
T ss_pred             cc-ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC--------cccccceeeeccccCccceeeeec
Confidence            11 123344567766  9999999987556999999999999999842        222223333443  3 58999999


Q ss_pred             CCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec-cCCcEeEEEEecCCCccccc
Q psy4577         307 PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG-HTAVVELELIERLTKKADPV  365 (384)
Q Consensus       307 ~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~  365 (384)
                      ++. ..+|+|+. +.|+||++...+..  .+..-..+.+ ..+.+.+++|||-...+++.
T Consensus      1314 ~ha-piiAsGs~-q~ikIy~~~G~~l~--~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1314 EHA-PIIASGSA-QLIKIYSLSGEQLN--IIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             cCC-CeeeecCc-ceEEEEecChhhhc--ccccCcccccCcCCCcceeeecchhHhhhhc
Confidence            997 59999998 99999999876411  0111111111 34578999999987766655

>KOG1523|consensus

Probab=99.66  E-value=8.7e-15  Score=115.29  Aligned_cols=214  Identities=18%  Similarity=0.279  Sum_probs=149.6

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      +|++|.. .+|++.....|.||.....           ...+...++..|...|++|+|+|..+ .|++|+.|+.-.+|.
T Consensus        17 Awn~drt-~iAv~~~~~evhiy~~~~~-----------~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~   83 (361)
T KOG1523|consen   17 AWNSDRT-QIAVSPNNHEVHIYSMLGA-----------DLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWT   83 (361)
T ss_pred             eecCCCc-eEEeccCCceEEEEEecCC-----------CCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccccc
Confidence            7899997 6999999999999998752           23678889999999999999999998 567999999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeecce-eeeeccccccccceeecccc
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEE-YKIWKKNTPFLYDLVMTHAL  160 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~-v~~w~~~~~~~~~~~~~~~~  160 (384)
                      ...+                ..|+..-..+       .......++.|+|.++.++-|. -++                 
T Consensus        84 ~~~~----------------~~WkptlvLl-------RiNrAAt~V~WsP~enkFAVgSgar~-----------------  123 (361)
T KOG1523|consen   84 QPSG----------------GTWKPTLVLL-------RINRAATCVKWSPKENKFAVGSGARL-----------------  123 (361)
T ss_pred             cCCC----------------CeeccceeEE-------EeccceeeEeecCcCceEEeccCccE-----------------
Confidence            8543                3354433222       1245677899999887765221 110                 


Q ss_pred             cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEE
Q psy4577         161 EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK  240 (384)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  240 (384)
                                                               .++           ..|..+..-|         ...+..
T Consensus       124 -----------------------------------------isV-----------cy~E~ENdWW---------VsKhik  142 (361)
T KOG1523|consen  124 -----------------------------------------ISV-----------CYYEQENDWW---------VSKHIK  142 (361)
T ss_pred             -----------------------------------------EEE-----------EEEeccccee---------hhhhhC
Confidence                                                     000           0111111111         112334


Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC----CCCCCCCcccee----eecCCCCceEEEEeCCCCCCe
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPS----KPDPNGECHPDL----RLRGHQKEGYGLSWNPSLNGY  312 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~~~----~~~~h~~~i~~~~~s~~~~~~  312 (384)
                      +.+...|++++|+|++- +|++||.|+..|||..--...    .+.+-+...|+.    ++....+.|..+.|+|+| ..
T Consensus       143 kPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~  220 (361)
T KOG1523|consen  143 KPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NR  220 (361)
T ss_pred             CccccceeeeeccCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CE
Confidence            46778899999999994 999999999999996432111    112233444432    333455799999999999 79


Q ss_pred             EEEeeCCCcEEEEecCCCC
Q psy4577         313 LLSASDDHTICLWDINATP  331 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~~~  331 (384)
                      |+-.+.|.++.+=|.....
T Consensus       221 lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  221 LAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             eeEecCCCceEEeecCCCc
Confidence            9999999999999988764

>KOG1310|consensus

Probab=99.66  E-value=5e-16  Score=130.70  Aligned_cols=185  Identities=16%  Similarity=0.182  Sum_probs=125.7

Q ss_pred             eEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccC
Q psy4577          44 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWP  123 (384)
Q Consensus        44 ~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (384)
                      +...+.||++.|+||+|+.+|. +|+|||+|-.+.|||....                       ..+..+-.||  ...
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~-----------------------KllhsI~TgH--taN   95 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEY-----------------------KLLHSISTGH--TAN   95 (758)
T ss_pred             hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhc-----------------------ceeeeeeccc--ccc
Confidence            3456689999999999999999 9999999999999998642                       1122234456  567


Q ss_pred             eeEEEEecCc-eee-e----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCC
Q psy4577         124 SLTAQWLPDV-TRV-I----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQN  197 (384)
Q Consensus       124 v~~~~~~~~~-~~~-~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (384)
                      |.++.|.|.. ..+ +    |..|+++|+...+...+                                           
T Consensus        96 IFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~-------------------------------------------  132 (758)
T KOG1310|consen   96 IFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM-------------------------------------------  132 (758)
T ss_pred             eeEEeeeccCCCeEEEeccCcceEEEEeccccccccc-------------------------------------------
Confidence            8999999864 233 2    66777765533211100                                           


Q ss_pred             eEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q psy4577         198 HLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKH  277 (384)
Q Consensus       198 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~  277 (384)
                                           |..           ..........|...|..++-.|++++.+-++++||+||-+|+++.
T Consensus       133 ---------------------d~~-----------~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  133 ---------------------DHG-----------MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             ---------------------ccC-----------ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence                                 000           000122234688899999999999999999999999999999852


Q ss_pred             CCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCC
Q psy4577         278 PSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINA  329 (384)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~  329 (384)
                      -.-.........+..+...--...++..+|..+.+||.|+.|--+++||.+.
T Consensus       181 h~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  181 HVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             ccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence            2111001111111122222235678999999889999999999999999654

>KOG1445|consensus

Probab=99.66  E-value=1.7e-15  Score=129.80  Aligned_cols=109  Identities=18%  Similarity=0.238  Sum_probs=84.7

Q ss_pred             EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      +..|...|+++.|+|--.++|++++.|-+|++||++        ...  ....+.||.+.|.+++|||+| +.+||.+.|
T Consensus       673 lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~--------~~~--~~~~l~gHtdqIf~~AWSpdG-r~~AtVcKD  741 (1012)
T KOG1445|consen  673 LTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA--------NAK--LYSRLVGHTDQIFGIAWSPDG-RRIATVCKD  741 (1012)
T ss_pred             eecccceEEEEEecchhhhHhhhhhccceeeeeehh--------hhh--hhheeccCcCceeEEEECCCC-cceeeeecC
Confidence            346788899999999877799999999999999996        332  345899999999999999999 899999999


Q ss_pred             CcEEEEecCCCCCCCccccceeeeeccC-CcEeEEEEecCCCccccc
Q psy4577         320 HTICLWDINATPKENRVIDAKTIFTGHT-AVVELELIERLTKKADPV  365 (384)
Q Consensus       320 g~i~iwd~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~~~~~~  365 (384)
                      |+|++|+.++..+      +++.-.+-. ..---+.|.-+|..+..+
T Consensus       742 g~~rVy~Prs~e~------pv~Eg~gpvgtRgARi~wacdgr~viv~  782 (1012)
T KOG1445|consen  742 GTLRVYEPRSREQ------PVYEGKGPVGTRGARILWACDGRIVIVV  782 (1012)
T ss_pred             ceEEEeCCCCCCC------ccccCCCCccCcceeEEEEecCcEEEEe
Confidence            9999999998753      444433311 122335677777765444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=8.1e-15  Score=129.85  Aligned_cols=89  Identities=12%  Similarity=0.035  Sum_probs=64.3

Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecC
Q psy4577         249 RARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN  328 (384)
Q Consensus       249 ~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~  328 (384)
                      ...|+|+|+ .++..+.++ +.+||+.        .+....+  ...+  ....+.|+|+| ++|+.++.++.+.+|++-
T Consensus       337 ~~~~SpDG~-~ia~~~~~~-i~~~Dl~--------~g~~~~l--t~~~--~~~~~~~sPdG-~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        337 SAQISADGK-TLVMINGDN-VVKQDLT--------SGSTEVL--SSTF--LDESPSISPNG-IMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             CccCCCCCC-EEEEEcCCC-EEEEECC--------CCCeEEe--cCCC--CCCCceECCCC-CEEEEEEcCCCceEEEEE
Confidence            467899996 666666554 5668985        3432221  1122  23567899999 799999999999988864


Q ss_pred             --CCCCCCccccceeeeeccCCcEeEEEEecCC
Q psy4577         329 --ATPKENRVIDAKTIFTGHTAVVELELIERLT  359 (384)
Q Consensus       329 --~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~  359 (384)
                        .++       ..+.+.+|.+.+.+.+|||--
T Consensus       402 ~~~G~-------~~~~l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        402 SADGR-------FKARLPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             ECCCC-------ceEEccCCCCCCCCcccCCCC
Confidence              455       778888888999999999853

>KOG1310|consensus

Probab=99.63  E-value=4.7e-15  Score=124.95  Aligned_cols=225  Identities=20%  Similarity=0.324  Sum_probs=141.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC-CCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN-EPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~-~~~~l~s~s~D~~i~v   79 (384)
                      ++|+-+|. +||+||.|-.+.|||....+             .+.....||...|.|+.|-|. +..+++||+.|..|++
T Consensus        56 LeWn~dG~-lL~SGSDD~r~ivWd~~~~K-------------llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   56 LEWNADGE-LLASGSDDTRLIVWDPFEYK-------------LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             eeecCCCC-EEeecCCcceEEeecchhcc-------------eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            57999997 89999999999999987521             344455799999999999885 3348899999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccce
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDL  154 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~  154 (384)
                      +|+...+.   ...+.....+...|..           |  ...|.-++-.|++...+     ||+++.+|++.+.....
T Consensus       122 fdl~~~~~---~~~d~~~~~~~~~~~c-----------h--t~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p  185 (758)
T KOG1310|consen  122 FDLDSSKE---GGMDHGMEETTRCWSC-----------H--TDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP  185 (758)
T ss_pred             Eecccccc---cccccCccchhhhhhh-----------h--hhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence            99975310   1111111112222221           2  34556677777775444     88988887765443211


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                          ....+..                                                 ...+.               
T Consensus       186 ----~~~~~~~-------------------------------------------------l~ny~---------------  197 (758)
T KOG1310|consen  186 ----DEDCPSI-------------------------------------------------LVNYN---------------  197 (758)
T ss_pred             ----cccccHH-------------------------------------------------HHHhc---------------
Confidence                0000000                                                 00000               


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCC---c-----cceee-ecCCC--------
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGE---C-----HPDLR-LRGHQ--------  297 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~-----~~~~~-~~~h~--------  297 (384)
                             ..--...++..+|..+++||.|+.|-..|+||.+.........+.   +     ..+.- ..+|-        
T Consensus       198 -------~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  198 -------PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             -------hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence                   001235688999999999999999999999996532211100110   0     00111 11221        


Q ss_pred             ---CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577         298 ---KEGYGLSWNPSLNGYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       298 ---~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                         ..++-++|+|+|.-+|++-+.+ .|+++|+...+
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~  306 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDK  306 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCCC
Confidence               1356789999997788887765 89999999876

>KOG2919|consensus

Probab=99.63  E-value=9.7e-15  Score=115.19  Aligned_cols=190  Identities=20%  Similarity=0.217  Sum_probs=129.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|||+. |.+ +..+.|+|+|+..++..-      +..+....--.|..+-|.|++|+|-...++|.++.-.++-|+
T Consensus       164 L~Fs~DGeq-lfa-GykrcirvFdt~RpGr~c------~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy  235 (406)
T KOG2919|consen  164 LQFSPDGEQ-LFA-GYKRCIRVFDTSRPGRDC------PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIY  235 (406)
T ss_pred             EEecCCCCe-Eee-cccceEEEeeccCCCCCC------cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeE
Confidence            579999984 554 478899999997655210      001111111234577899999999887789999998888776


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~  155 (384)
                      .-..+                      .+  ..++.+|  .+.|+.++|.++|+.++     +..|..||++.....-. 
T Consensus       236 ~~~~~----------------------~p--l~llggh--~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~-  288 (406)
T KOG2919|consen  236 NDDGR----------------------RP--LQLLGGH--GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY-  288 (406)
T ss_pred             ecCCC----------------------Cc--eeeeccc--CCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh-
Confidence            54332                      22  2355566  78899999999999887     66777888754322100 


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                      
T Consensus       289 --------------------------------------------------------------------------------  288 (406)
T KOG2919|consen  289 --------------------------------------------------------------------------------  288 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEeecCC---ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCe
Q psy4577         236 EIEIKINHEG---EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGY  312 (384)
Q Consensus       236 ~~~~~~~~~~---~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~  312 (384)
                         .+..|.+   .=.-+...|.++ +||+|+.||.|++||+...         ..+...+..|...++.++++|--| +
T Consensus       289 ---~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~---------gn~~sv~~~~sd~vNgvslnP~mp-i  354 (406)
T KOG2919|consen  289 ---ALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDL---------GNEVSVTGNYSDTVNGVSLNPIMP-I  354 (406)
T ss_pred             ---hhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCC---------CCcccccccccccccceecCcccc-e
Confidence               0000110   011244568884 9999999999999999632         224556777899999999999985 8


Q ss_pred             EEEeeCC
Q psy4577         313 LLSASDD  319 (384)
Q Consensus       313 l~s~s~D  319 (384)
                      +||++..
T Consensus       355 latssGq  361 (406)
T KOG2919|consen  355 LATSSGQ  361 (406)
T ss_pred             eeeccCc
Confidence            8888763

>KOG0642|consensus

Probab=99.63  E-value=6.3e-15  Score=124.43  Aligned_cols=254  Identities=18%  Similarity=0.219  Sum_probs=169.3

Q ss_pred             ceEEEeeCCCeEEEe--ecCCcCcccccCC---C---CCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           9 TILASSGTDRRLHVW--DLSKIGEEQSTED---A---EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         9 ~~lat~~~d~~i~vw--d~~~~~~~~~~~~---~---~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      .+..+...|...++|  ++....-+....+   .   -.....+.+++..|.+.|..++|.|..+ .|++|+.|+++++|
T Consensus       243 ~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~W  321 (577)
T KOG0642|consen  243 SISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLW  321 (577)
T ss_pred             CccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCC-eEEEeccccchhhh
Confidence            456666667777788  4432211111110   0   1112345568889999999999999999 77899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      +++......    .          ..-.+.+  .+.+|  ..+|.|++..+.+..++    ||+|+.|++. ... +-  
T Consensus       322 nLqk~~~s~----~----------~~~epi~--tfraH--~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p-~n~-dp--  379 (577)
T KOG0642|consen  322 NLQKAKKSA----E----------KDVEPIL--TFRAH--EGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP-PNQ-DP--  379 (577)
T ss_pred             hhcccCCcc----c----------cceeeeE--EEecc--cCceEEEEecCCceEEEeeccCceeeeeccC-CCC-Cc--
Confidence            994310000    0          0001111  33445  88999999999998887    9999999763 111 00  


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                     +                                           ..+|.             ...
T Consensus       380 ---------------~-------------------------------------------ds~dp-------------~vl  388 (577)
T KOG0642|consen  380 ---------------D-------------------------------------------DSYDP-------------SVL  388 (577)
T ss_pred             ---------------c-------------------------------------------cccCc-------------chh
Confidence                           0                                           00110             111


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC--CCCC--C---------------------------
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK--PDPN--G---------------------------  285 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~--~---------------------------  285 (384)
                      ...+.+|.+.|+.+++|+... .|++++.||++|+|+.......  ..+.  +                           
T Consensus       389 ~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~  467 (577)
T KOG0642|consen  389 SGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSID  467 (577)
T ss_pred             ccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccch
Confidence            334568999999999999885 7999999999999987643320  0000  0                           


Q ss_pred             ---Cccceeeec-----C--CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEE
Q psy4577         286 ---ECHPDLRLR-----G--HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELI  355 (384)
Q Consensus       286 ---~~~~~~~~~-----~--h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  355 (384)
                         ....+..+.     +  -...+..+.++|.+ .+.+++..|+.|+++|..++.       ++.....|...++++++
T Consensus       468 ~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~-------~l~s~~a~~~svtslai  539 (577)
T KOG0642|consen  468 DMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGK-------ILHSMVAHKDSVTSLAI  539 (577)
T ss_pred             hhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceecccccccc-------cchheeeccceecceee
Confidence               000000111     0  11247788999998 599999999999999999999       99999999999999999


Q ss_pred             ecCCCccccc
Q psy4577         356 ERLTKKADPV  365 (384)
Q Consensus       356 sp~~~~~~~~  365 (384)
                      -|.|..+.+.
T Consensus       540 ~~ng~~l~s~  549 (577)
T KOG0642|consen  540 DPNGPYLMSG  549 (577)
T ss_pred             cCCCceEEee
Confidence            9999987765

>KOG4227|consensus

Probab=99.61  E-value=1.9e-14  Score=116.45  Aligned_cols=203  Identities=14%  Similarity=0.055  Sum_probs=137.6

Q ss_pred             EEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCee
Q psy4577          46 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSL  125 (384)
Q Consensus        46 ~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  125 (384)
                      +-+.+|.+.|++|.|+.+++ +|++|+.|..+++|.++..-.                -+...+ +  -+.+|.+...|.
T Consensus        50 KD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~----------------~k~~KP-I--~~~~~~H~SNIF  109 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMV----------------RKTPKP-I--GVMEHPHRSNIF  109 (609)
T ss_pred             hhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHh----------------hcCCCC-c--eeccCccccceE
Confidence            34568999999999999988 889999999999999865200                011112 1  344666678899


Q ss_pred             EEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEE
Q psy4577         126 TAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLI  201 (384)
Q Consensus       126 ~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  201 (384)
                      +++|....+.++    +++|.+.|+.+...                                                  
T Consensus       110 ~L~F~~~N~~~~SG~~~~~VI~HDiEt~qs--------------------------------------------------  139 (609)
T KOG4227|consen  110 SLEFDLENRFLYSGERWGTVIKHDIETKQS--------------------------------------------------  139 (609)
T ss_pred             EEEEccCCeeEecCCCcceeEeeeccccee--------------------------------------------------
Confidence            999998877766    44444333221100                                                  


Q ss_pred             EEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC
Q psy4577         202 ASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP  281 (384)
Q Consensus       202 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~  281 (384)
                                                       +.+..-....+.|..+..+|.. ++|++.+.++.|.+||.+..++  
T Consensus       140 ---------------------------------i~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~--  183 (609)
T KOG4227|consen  140 ---------------------------------IYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQN--  183 (609)
T ss_pred             ---------------------------------eeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCC--
Confidence                                             0011111224578999999986 6999999999999999985321  


Q ss_pred             CCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec---cCC---cEeEEEE
Q psy4577         282 DPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG---HTA---VVELELI  355 (384)
Q Consensus       282 ~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~---h~~---~v~~~~~  355 (384)
                           ......+.........+-|+|.-|.+|++.+.-+-+.+||++..+.      ++....+   -..   .-..+.|
T Consensus       184 -----~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~------~~~~~~~~~~L~~~~~~~M~~~~  252 (609)
T KOG4227|consen  184 -----PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR------PVYQRSMFKGLPQENTEWMGSLW  252 (609)
T ss_pred             -----CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc------hHHhhhccccCcccchhhhheee
Confidence                 1122233334456789999999899999999999999999997652      3332222   111   2256789


Q ss_pred             ecCCCccccc
Q psy4577         356 ERLTKKADPV  365 (384)
Q Consensus       356 sp~~~~~~~~  365 (384)
                      +|.|.++.+.
T Consensus       253 ~~~G~Q~msi  262 (609)
T KOG4227|consen  253 SPSGNQFMSI  262 (609)
T ss_pred             CCCCCeehhh
Confidence            9999876654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.61  E-value=5e-13  Score=114.87  Aligned_cols=238  Identities=10%  Similarity=0.054  Sum_probs=134.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+++.+++++..++.|.+|++...+           ......... ..+....++|+|+++.++++.-.++.|.+|
T Consensus        40 l~~spd~~~lyv~~~~~~~i~~~~~~~~g-----------~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~  107 (330)
T PRK11028         40 MVISPDKRHLYVGVRPEFRVLSYRIADDG-----------ALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVS  107 (330)
T ss_pred             EEECCCCCEEEEEECCCCcEEEEEECCCC-----------ceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEE
Confidence            46899998544555568899999986321           011222211 223467899999999555444458999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~  155 (384)
                      ++........         .+           ..+.+   .....+++++|+++.++     ++.|.+|++.......  
T Consensus       108 ~~~~~g~~~~---------~~-----------~~~~~---~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~--  162 (330)
T PRK11028        108 PLDKDGIPVA---------PI-----------QIIEG---LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV--  162 (330)
T ss_pred             EECCCCCCCC---------ce-----------eeccC---CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc--
Confidence            9964211000         00           00000   12245788999998775     6777887764311100  


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                       ....                                                                          .
T Consensus       163 -~~~~--------------------------------------------------------------------------~  167 (330)
T PRK11028        163 -AQEP--------------------------------------------------------------------------A  167 (330)
T ss_pred             -ccCC--------------------------------------------------------------------------C
Confidence             0000                                                                          0


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC------CCCceEEEEeCCCC
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG------HQKEGYGLSWNPSL  309 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------h~~~i~~~~~s~~~  309 (384)
                       ... .........++|+|+++.++++...++.|.+|++...      .+....+..+..      +......+.++|++
T Consensus       168 -~~~-~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~------~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        168 -EVT-TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP------HGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             -cee-cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC------CCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence             000 0001224578999999744444444899999999621      112222222221      11234468999998


Q ss_pred             CCeEEEee-CCCcEEEEecCCCCCCCccccceeeeeccC---CcEeEEEEecCCCcccccc
Q psy4577         310 NGYLLSAS-DDHTICLWDINATPKENRVIDAKTIFTGHT---AVVELELIERLTKKADPVC  366 (384)
Q Consensus       310 ~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~~c  366 (384)
                       ++|+++. .+++|.+|++....       ...++.+|.   .....+.|+|+|+.+....
T Consensus       240 -~~lyv~~~~~~~I~v~~i~~~~-------~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~  292 (330)
T PRK11028        240 -RHLYACDRTASLISVFSVSEDG-------SVLSFEGHQPTETQPRGFNIDHSGKYLIAAG  292 (330)
T ss_pred             -CEEEEecCCCCeEEEEEEeCCC-------CeEEEeEEEeccccCCceEECCCCCEEEEEE
Confidence             6777765 47999999997643       111222221   2345789999999877553

>KOG0771|consensus

Probab=99.61  E-value=2.5e-14  Score=116.83  Aligned_cols=62  Identities=13%  Similarity=0.105  Sum_probs=54.5

Q ss_pred             CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee-ccCCcEeEEEEecCCCccccccc
Q psy4577         298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-GHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       298 ~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      ..|++++.+++| +++|-|+.||.|-|++..+.+       .++..+ .|...|+.+.|+||.+.+.++.+
T Consensus       282 ~siSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq-------~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs  344 (398)
T KOG0771|consen  282 KSISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQ-------RLQYVKEAHLGFVTGLTFSPDSRYLASVSS  344 (398)
T ss_pred             CcceeEEEcCCC-cEEEEeccCCcEEEEEeceee-------eeEeehhhheeeeeeEEEcCCcCccccccc
Confidence            469999999999 899999999999999999987       666554 69999999999999998877543

>KOG1538|consensus

Probab=99.60  E-value=2.4e-14  Score=123.56  Aligned_cols=233  Identities=17%  Similarity=0.205  Sum_probs=149.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+.+|+ ++|+|+.|..|.||+-+-+|             .+.   ..|.+.|.|+.|+|-.. .|+||+-. ..-+|
T Consensus        59 VAys~dGk-rFASG~aDK~VI~W~~klEG-------------~Lk---YSH~D~IQCMsFNP~~h-~LasCsLs-dFglW  119 (1081)
T KOG1538|consen   59 VAYAKDGK-RFASGSADKSVIIWTSKLEG-------------ILK---YSHNDAIQCMSFNPITH-QLASCSLS-DFGLW  119 (1081)
T ss_pred             EEEccCCc-eeccCCCceeEEEecccccc-------------eee---eccCCeeeEeecCchHH-Hhhhcchh-hcccc
Confidence            57999998 79999999999999976432             222   57999999999999988 67787754 35567


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      .....                            ....|.....+.+++|..||++++    +|++.+-+........+-.
T Consensus       120 S~~qK----------------------------~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R  171 (1081)
T KOG1538|consen  120 SPEQK----------------------------SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER  171 (1081)
T ss_pred             Chhhh----------------------------hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeC
Confidence            66442                            111222345688999999999987    8998875544333222222


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      ......|..+++|.|.......                  .   +           +.+..|..+..-+    ..++++ 
T Consensus       172 pgg~Nspiwsi~~~p~sg~G~~------------------d---i-----------~aV~DW~qTLSFy----~LsG~~-  214 (1081)
T KOG1538|consen  172 PGGSNSPIWSICWNPSSGEGRN------------------D---I-----------LAVADWGQTLSFY----QLSGKQ-  214 (1081)
T ss_pred             CCCCCCCceEEEecCCCCCCcc------------------c---e-----------EEEEeccceeEEE----Eeccee-
Confidence            2223334555556554321000                  0   0           0111111111000    001111 


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      +.......-.-.|+.+.|+|+ +++.|+.|+.+.+|-.         .|  ..+.++.....+|+.++..|++ ++++.|
T Consensus       215 Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fTR---------~G--vrLGTvg~~D~WIWtV~~~PNs-Q~v~~G  281 (1081)
T KOG1538|consen  215 IGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLFTR---------DG--VRLGTVGEQDSWIWTVQAKPNS-QYVVVG  281 (1081)
T ss_pred             ecccccCCCCchhheeccCCc-EEEEccCCCceEEEee---------cC--eEEeeccccceeEEEEEEccCC-ceEEEE
Confidence            111112233456899999996 8888899999999976         33  2345666667799999999998 799999


Q ss_pred             eCCCcEEEEecCCC
Q psy4577         317 SDDHTICLWDINAT  330 (384)
Q Consensus       317 s~Dg~i~iwd~~~~  330 (384)
                      ..||+|.-|++-..
T Consensus       282 CqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  282 CQDGTIACYNLIFS  295 (1081)
T ss_pred             EccCeeehhhhHHh
Confidence            99999999998654

>KOG1273|consensus

Probab=99.59  E-value=8.9e-15  Score=115.00  Aligned_cols=102  Identities=16%  Similarity=0.191  Sum_probs=88.7

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEe
Q psy4577         247 VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWD  326 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd  326 (384)
                      ..++.|++.|. +||+|+.||.|.|||+.        +..  +-..+.+|..+|++++||++| +.|+|+|.|..|.+||
T Consensus        26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~--------T~~--iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwD   93 (405)
T KOG1273|consen   26 AECCQFSRWGD-YLAVGCANGRVVIYDFD--------TFR--IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWD   93 (405)
T ss_pred             cceEEeccCcc-eeeeeccCCcEEEEEcc--------ccc--hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEe
Confidence            68999999995 99999999999999996        222  334788999999999999999 8999999999999999


Q ss_pred             cCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         327 INATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      +..+.       +++.++ ..++|+.+.|||......-+|..
T Consensus        94 l~~gs-------~l~rir-f~spv~~~q~hp~k~n~~va~~~  127 (405)
T KOG1273|consen   94 LLKGS-------PLKRIR-FDSPVWGAQWHPRKRNKCVATIM  127 (405)
T ss_pred             ccCCC-------ceeEEE-ccCccceeeeccccCCeEEEEEe
Confidence            99998       888876 67899999999988776655543

>KOG2394|consensus

Probab=99.58  E-value=7.2e-14  Score=117.56  Aligned_cols=95  Identities=17%  Similarity=0.337  Sum_probs=82.7

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ++.|+.++|+|||+ +||+.|.||.+||||...          .+.+..++..-+...|++||||| +||++|++|--|.
T Consensus       290 ~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt----------~eLlg~mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVt  357 (636)
T KOG2394|consen  290 EGSINEFAFSPDGK-YLATVSQDGFLRIFDFDT----------QELLGVMKSYFGGLLCVCWSPDG-KYIVTGGEDDLVT  357 (636)
T ss_pred             cccccceeEcCCCc-eEEEEecCceEEEeeccH----------HHHHHHHHhhccceEEEEEcCCc-cEEEecCCcceEE
Confidence            45899999999996 999999999999999852          12333445555789999999999 8999999999999


Q ss_pred             EEecCCCCCCCccccceeeeeccCCcEeEEEEec
Q psy4577         324 LWDINATPKENRVIDAKTIFTGHTAVVELELIER  357 (384)
Q Consensus       324 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp  357 (384)
                      ||.+...+       .+..-+||+++|+.|+|-|
T Consensus       358 VwSf~erR-------VVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  358 VWSFEERR-------VVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEEeccce-------EEEeccccccceeeEeecc
Confidence            99999988       8888899999999999986

>KOG1334|consensus

Probab=99.56  E-value=1.7e-13  Score=114.00  Aligned_cols=289  Identities=17%  Similarity=0.222  Sum_probs=172.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCC-cEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~-~~l~s~s~D~~i~v   79 (384)
                      |.|+..|. .|++||.|.+|.+||+....             ..+....||...|....|-|... .-+++++.||.+++
T Consensus       148 V~FN~~Gd-~l~SgSDD~~vv~WdW~~~~-------------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  148 VHFNQRGD-VLASGSDDLQVVVWDWVSGS-------------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             eeecccCc-eeeccCccceEEeehhhccC-------------cccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            45788886 79999999999999998632             34455578999999999988642 35889999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccce
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDL  154 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~  154 (384)
                      =.+......                + +.    +.+..|  .++|.-++.-|+...-+     |+.+.-.|++.......
T Consensus       214 s~i~~t~~~----------------e-~t----~rl~~h--~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~  270 (559)
T KOG1334|consen  214 SEILETGYV----------------E-NT----KRLAPH--EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK  270 (559)
T ss_pred             eeeccccce----------------e-cc----eecccc--cCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence            665432000                0 00    112223  66777788878775544     55555555443322221


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCc-ccccccccCcCCCCCCccC---
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDA-QFDASNYDTDKGDFGGFGS---  230 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~---  230 (384)
                      +.....                                 ++...+....+...+.+. .+.+...|.-.+.+.....   
T Consensus       271 ~~cr~~---------------------------------~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e  317 (559)
T KOG1334|consen  271 FVCREA---------------------------------DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE  317 (559)
T ss_pred             eeeecc---------------------------------CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc
Confidence            111100                                 011122333444333332 2222222222222211000   


Q ss_pred             ----CCCceeEEEEe-ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC-CCCCCCC--ccceeeecCCCC--ce
Q psy4577         231 ----VSGKIEIEIKI-NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPS-KPDPNGE--CHPDLRLRGHQK--EG  300 (384)
Q Consensus       231 ----~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~--~~~~~~~~~h~~--~i  300 (384)
                          .-.++....+. ...-.|++++|+.++..+||+ -.|-.|++|.-..... .+.+...  ......++||..  -|
T Consensus       318 ~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS-YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV  396 (559)
T KOG1334|consen  318 ENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS-YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV  396 (559)
T ss_pred             cccchhhhcCCccccccCcccceeEEecCCccceeee-ecccceEEeccccccCCCCCCCcchhhccchhhccccccccc
Confidence                00112121111 234568999999877667776 5577899995432111 1111110  111124788865  56


Q ss_pred             EEEEeC-CCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         301 YGLSWN-PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       301 ~~~~~s-~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      -.+.|- |.. .|++|||.-|.|.||+-.+++       .++.+.+....|+||.=||--+.+++....
T Consensus       397 KgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~e-------ii~~MegDr~VVNCLEpHP~~PvLAsSGid  457 (559)
T KOG1334|consen  397 KGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGE-------IIRFMEGDRHVVNCLEPHPHLPVLASSGID  457 (559)
T ss_pred             ceeeeccCcc-ceEEecCccceEEEEecchhH-------HHHHhhcccceEeccCCCCCCchhhccCCc
Confidence            777664 555 699999999999999999998       899999877799999999999998877543

>KOG1524|consensus

Probab=99.56  E-value=7.2e-14  Score=117.60  Aligned_cols=96  Identities=15%  Similarity=0.269  Sum_probs=77.6

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ..+|.|++|.|+..+.+.+.+  +.+.|=.+.         .. ..+..++.|.+-|.++.|++.. .+++||++|-..+
T Consensus       145 ~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~---------~n-~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfK  211 (737)
T KOG1524|consen  145 EESIRCARWAPNSNSIVFCQG--GHISIKPLA---------AN-SKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFK  211 (737)
T ss_pred             CceeEEEEECCCCCceEEecC--CeEEEeecc---------cc-cceeEEeccCcEEEEeecCccc-cceeecCCceeEE
Confidence            457999999999876777654  567765553         12 2355899999999999999997 7999999999999


Q ss_pred             EEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577         324 LWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK  360 (384)
Q Consensus       324 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  360 (384)
                      |||-...        ++..-..|..+|++++|+|+..
T Consensus       212 vWD~~G~--------~Lf~S~~~ey~ITSva~npd~~  240 (737)
T KOG1524|consen  212 IWDAQGA--------NLFTSAAEEYAITSVAFNPEKD  240 (737)
T ss_pred             eecccCc--------ccccCChhccceeeeeeccccc
Confidence            9998765        5566667999999999999943

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.56  E-value=3.4e-12  Score=114.07  Aligned_cols=209  Identities=22%  Similarity=0.396  Sum_probs=145.3

Q ss_pred             CCCCCceEEEeeC-CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEec-CCeEEEEE
Q psy4577           4 SPHNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE-DNIMQILS   81 (384)
Q Consensus         4 sp~~~~~lat~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~-D~~i~vwd   81 (384)
                      ++++..+++..+. |+.+.+|+....             ......+.+|...|.+++|+|++. .+++++. |+.+++|+
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~  184 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLSTP-------------GKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWD  184 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecCC-------------CeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEE
Confidence            5566534454444 999999999741             256677789999999999999999 6667775 99999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCce-eee----cceeeeeccccccccceee
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT-RVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      +....             .+.           .+.+|  ...+.+++|+|++. .++    ++.+++|+......     
T Consensus       185 ~~~~~-------------~~~-----------~~~~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~-----  233 (466)
T COG2319         185 LRTGK-------------PLS-----------TLAGH--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL-----  233 (466)
T ss_pred             cCCCc-------------eEE-----------eeccC--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE-----
Confidence            97621             111           12222  56788899998876 332    55666663321000     


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                                                                                      
T Consensus       234 --------------------------------------------------------------------------------  233 (466)
T COG2319         234 --------------------------------------------------------------------------------  233 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EE-EEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         237 IE-IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       237 ~~-~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      .. ....|.... -..|+|++ .++++++.|+.+++|+++.        ... .+..+.+|...+.++.|+|++ ..+++
T Consensus       234 ~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~--------~~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~  301 (466)
T COG2319         234 LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRS--------SSS-LLRTLSGHSSSVLSVAFSPDG-KLLAS  301 (466)
T ss_pred             EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecC--------CCc-EEEEEecCCccEEEEEECCCC-CEEEE
Confidence            00 122344443 22889998 4888999999999999963        222 233336888999999999987 67888


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeee--ccCCcEeEEEEe
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFT--GHTAVVELELIE  356 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s  356 (384)
                      ++.|+.+++||..+..       ......  .|...+..+.|.
T Consensus       302 ~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  337 (466)
T COG2319         302 GSSDGTVRLWDLETGK-------LLSSLTLKGHEGPVSSLSFS  337 (466)
T ss_pred             eeCCCcEEEEEcCCCc-------eEEEeeecccCCceEEEEEC
Confidence            9999999999988876       444444  788889999993

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.56  E-value=2.6e-12  Score=114.79  Aligned_cols=220  Identities=21%  Similarity=0.331  Sum_probs=151.1

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccc-cceEEEEE-ccCCCcEEEEE-ecCCeEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFSW-NPNEPWVICSV-SEDNIMQ   78 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~-~~~~~~~l~s~-s~D~~i~   78 (384)
                      .|.+.+. .++.++.|+.+.+|+....             ......+.++. ..+..+.+ ++++..+++.. ..|+.++
T Consensus        72 ~~~~~~~-~~~~~~~d~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          72 AFSPDGE-LLLSGSSDGTIKLWDLDNG-------------EKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             EECCCCc-EEEEecCCCcEEEEEcCCC-------------ceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence            4677776 6888889999999999862             12455555543 37888888 77777344443 4499999


Q ss_pred             EEEccc-CCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccc
Q psy4577          79 ILSVVC-VEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        79 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~  152 (384)
                      +|++.. .             ...           ..+..|  ...+..++|+|++..++     ++.+++|+...    
T Consensus       138 ~~~~~~~~-------------~~~-----------~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  187 (466)
T COG2319         138 LWDLSTPG-------------KLI-----------RTLEGH--SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT----  187 (466)
T ss_pred             EEEecCCC-------------eEE-----------EEEecC--cccEEEEEECCCCCEEEecCCCCCceEEEEcCC----
Confidence            999875 1             000           122223  45567889999886443     34444444322    


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (466)
T COG2319         188 --------------------------------------------------------------------------------  187 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcccee-eecCCCCceEEEEeCCCCCC
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDL-RLRGHQKEGYGLSWNPSLNG  311 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~~~~s~~~~~  311 (384)
                       .........|...|.+++|+|++..++++++.|+.|++||.+        .+  .... .+.+|.... ...|+|++ .
T Consensus       188 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~--------~~--~~~~~~~~~~~~~~-~~~~~~~~-~  254 (466)
T COG2319         188 -GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS--------TG--KLLRSTLSGHSDSV-VSSFSPDG-S  254 (466)
T ss_pred             -CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC--------CC--cEEeeecCCCCcce-eEeECCCC-C
Confidence             001222334888999999999886356666999999999874        12  2233 577888775 44899998 7


Q ss_pred             eEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccc
Q psy4577         312 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADP  364 (384)
Q Consensus       312 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  364 (384)
                      ++++++.|+.+++|+++....      .+..+.+|...|.++.|+|++..+.+
T Consensus       255 ~~~~~~~d~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         255 LLASGSSDGTIRLWDLRSSSS------LLRTLSGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             EEEEecCCCcEEEeeecCCCc------EEEEEecCCccEEEEEECCCCCEEEE
Confidence            999999999999999998762      24444678999999999997776665

>KOG2110|consensus

Probab=99.55  E-value=1.6e-12  Score=104.64  Aligned_cols=111  Identities=19%  Similarity=0.175  Sum_probs=84.7

Q ss_pred             ceEEEEEcCCCCcEEEEE--eCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc-E
Q psy4577         246 EVNRARYMPQNPCVIATK--TPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT-I  322 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~-i  322 (384)
                      .+.++.+++.+ .++|--  ...|.|+|||..          ..++...+..|.+++-+++|+++| .+|||+|..|+ |
T Consensus       131 gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~----------nl~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVI  198 (391)
T KOG2110|consen  131 GLCALSPNNAN-CYLAYPGSTTSGDVVLFDTI----------NLQPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVI  198 (391)
T ss_pred             ceEeeccCCCC-ceEEecCCCCCceEEEEEcc----------cceeeeEEEecCCceeEEEECCCC-CEEEEeccCceEE
Confidence            34445555544 255432  246889999974          445777889999999999999999 79999999986 5


Q ss_pred             EEEecCCCCCCCccccceeeeec--cCCcEeEEEEecCCCcccccccccccceee
Q psy4577         323 CLWDINATPKENRVIDAKTIFTG--HTAVVELELIERLTKKADPVCTLEKAKKKK  375 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~~c~~~~~~~~~  375 (384)
                      ||+.+.+++       .+..|+-  ....|.+++|+|+++.+.+..+-...+.+|
T Consensus       199 RVf~v~~G~-------kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK  246 (391)
T KOG2110|consen  199 RVFSVPEGQ-------KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK  246 (391)
T ss_pred             EEEEcCCcc-------EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence            799999998       8888863  234689999999999888776666555544

>KOG2139|consensus

Probab=99.55  E-value=5e-12  Score=101.65  Aligned_cols=117  Identities=15%  Similarity=0.287  Sum_probs=78.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecC-CeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED-NIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D-~~i~v   79 (384)
                      ++|-|.+..-||.|+..| |+||..+..................+....||. +|++|+|++||. .+++++.+ ..|+|
T Consensus       146 lawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~-pVtsmqwn~dgt-~l~tAS~gsssi~i  222 (445)
T KOG2139|consen  146 LAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHN-PVTSMQWNEDGT-ILVTASFGSSSIMI  222 (445)
T ss_pred             EEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCc-eeeEEEEcCCCC-EEeecccCcceEEE
Confidence            478888776788888765 999988754322111111112223345557884 999999999999 77788755 89999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecc
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKK  146 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~  146 (384)
                      ||+.++...+           ++ |+.              ...+.-+.|+||+..++    |+..++|+.
T Consensus       223 Wdpdtg~~~p-----------L~-~~g--------------lgg~slLkwSPdgd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  223 WDPDTGQKIP-----------LI-PKG--------------LGGFSLLKWSPDGDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             EcCCCCCccc-----------cc-ccC--------------CCceeeEEEcCCCCEEEEecccceeeeehh
Confidence            9999863321           00 111              22345689999998887    888899854

>KOG4497|consensus

Probab=99.54  E-value=7.1e-13  Score=105.14  Aligned_cols=71  Identities=23%  Similarity=0.448  Sum_probs=58.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      +.|.-|...+|+....|+.|.+|++..              ++-.-....-..++.+++|||+|+.+|.+...|-.|.+|
T Consensus        54 ieW~ads~~ilC~~yk~~~vqvwsl~Q--------------pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVW  119 (447)
T KOG4497|consen   54 IEWKADSCHILCVAYKDPKVQVWSLVQ--------------PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVW  119 (447)
T ss_pred             eeeeccceeeeeeeeccceEEEEEeec--------------ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEE
Confidence            356667777788888899999999986              444444555577899999999998899999999999999


Q ss_pred             EcccC
Q psy4577          81 SVVCV   85 (384)
Q Consensus        81 d~~~~   85 (384)
                      .+.+.
T Consensus       120 SL~t~  124 (447)
T KOG4497|consen  120 SLNTQ  124 (447)
T ss_pred             Eeccc
Confidence            99774

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=5.2e-13  Score=118.37  Aligned_cols=103  Identities=14%  Similarity=0.145  Sum_probs=67.0

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      .+...+....|+|+|+.+++++..+|..+||++...       +..  ...+ ++..  ...+|+||| ++|+..+.++ 
T Consensus       289 ~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~-------~~~--~~~l-~~~~--~~~~~SpDG-~~ia~~~~~~-  354 (429)
T PRK01742        289 SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS-------GGG--ASLV-GGRG--YSAQISADG-KTLVMINGDN-  354 (429)
T ss_pred             cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC-------CCC--eEEe-cCCC--CCccCCCCC-CEEEEEcCCC-
Confidence            345567789999999755556567888999987521       111  1122 3333  467899999 6888877765 


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      +.+||+.+++       .......+  ....+.|+|+|..++....
T Consensus       355 i~~~Dl~~g~-------~~~lt~~~--~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        355 VVKQDLTSGS-------TEVLSSTF--LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             EEEEECCCCC-------eEEecCCC--CCCCceECCCCCEEEEEEc
Confidence            5669998875       32211122  2356789999998776543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.54  E-value=7.9e-12  Score=107.51  Aligned_cols=109  Identities=10%  Similarity=0.133  Sum_probs=68.7

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccc----eeeecCCCCceEEEEeCCCCCCeEEEeeC-CC
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHP----DLRLRGHQKEGYGLSWNPSLNGYLLSASD-DH  320 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~h~~~i~~~~~s~~~~~~l~s~s~-Dg  320 (384)
                      ...+++++|+++.++++...++.|.+||+...       +...+    ...... ......++|+|+| ++|+++.. ++
T Consensus       127 ~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~-------g~l~~~~~~~~~~~~-g~~p~~~~~~pdg-~~lyv~~~~~~  197 (330)
T PRK11028        127 GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD-------GHLVAQEPAEVTTVE-GAGPRHMVFHPNQ-QYAYCVNELNS  197 (330)
T ss_pred             cccEeEeCCCCCEEEEeeCCCCEEEEEEECCC-------CcccccCCCceecCC-CCCCceEEECCCC-CEEEEEecCCC
Confidence            35678899999766677777899999999631       11110    011111 2345689999999 67766665 89


Q ss_pred             cEEEEecCCCCCCCccccceeeeec------cCCcEeEEEEecCCCcccccc
Q psy4577         321 TICLWDINATPKENRVIDAKTIFTG------HTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      +|.+|++........   .+.++..      +.....++.|+|+++.+...+
T Consensus       198 ~v~v~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~  246 (330)
T PRK11028        198 SVDVWQLKDPHGEIE---CVQTLDMMPADFSDTRWAADIHITPDGRHLYACD  246 (330)
T ss_pred             EEEEEEEeCCCCCEE---EEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence            999999984321111   2333321      112334689999999766654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.54  E-value=1.3e-12  Score=101.99  Aligned_cols=72  Identities=17%  Similarity=0.366  Sum_probs=53.1

Q ss_pred             CceEEEEEcCCCCcEEEEEeC---CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC---
Q psy4577         245 GEVNRARYMPQNPCVIATKTP---SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD---  318 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~---  318 (384)
                      ..++.|.|+|+|+ +|++|+.   .|.|.+||.+          ..+.+.... | ..++.++|+|+| ++|+++..   
T Consensus       101 ~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~----------~~~~i~~~~-~-~~~t~~~WsPdG-r~~~ta~t~~r  166 (194)
T PF08662_consen  101 QPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVR----------KKKKISTFE-H-SDATDVEWSPDG-RYLATATTSPR  166 (194)
T ss_pred             CCceEEEECCCCC-EEEEEEccCCCcEEEEEECC----------CCEEeeccc-c-CcEEEEEEcCCC-CEEEEEEeccc
Confidence            3467899999996 7777663   4679999985          222333332 3 357899999999 78888874   


Q ss_pred             ---CCcEEEEecCCC
Q psy4577         319 ---DHTICLWDINAT  330 (384)
Q Consensus       319 ---Dg~i~iwd~~~~  330 (384)
                         |+.++||++...
T Consensus       167 ~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  167 LRVDNGFKIWSFQGR  181 (194)
T ss_pred             eeccccEEEEEecCe
Confidence               799999999643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=2.4e-12  Score=113.91  Aligned_cols=92  Identities=11%  Similarity=0.079  Sum_probs=61.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCC--CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc--
Q psy4577         246 EVNRARYMPQNPCVIATKTPS--SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT--  321 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~--  321 (384)
                      ......|+|+|+.+++++..+  ..|.+||+.        .+...   .+... .......|+||| ++|+.++.|+.  
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~--------~g~~~---~Lt~~-~~~~~p~~SpDG-~~i~~~s~~~~~~  398 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA--------TGGVQ---VLTDT-FLDETPSIAPNG-TMVIYSSSQGMGS  398 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECC--------CCCeE---EeCCC-CCCCCceECCCC-CEEEEEEcCCCce
Confidence            345688999997444444333  357888875        33322   22221 123467899999 78888888764  


Q ss_pred             -EEEEecCCCCCCCccccceeeeeccCCcEeEEEEecC
Q psy4577         322 -ICLWDINATPKENRVIDAKTIFTGHTAVVELELIERL  358 (384)
Q Consensus       322 -i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  358 (384)
                       +.++++...        ....+.+|.+.+...+|+|-
T Consensus       399 ~l~~~~~~G~--------~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        399 VLNLVSTDGR--------FKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             EEEEEECCCC--------CeEECccCCCCcCCcccCCC
Confidence             677777544        55667778889999999983

>KOG2111|consensus

Probab=99.51  E-value=3.8e-11  Score=95.01  Aligned_cols=83  Identities=20%  Similarity=0.358  Sum_probs=68.6

Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCc-EEEEecCCCCCCCCCCCCccceeeecCC--CCceEEEEeCCCCCCeE
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSD-VLVFDYTKHPSKPDPNGECHPDLRLRGH--QKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~s~~~~~~l  313 (384)
                      .....+|...|.|++.+-+|. ++||+|..|+ |||||..        ++.  ++.+++..  ...|.+|+|||+. .+|
T Consensus       174 p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~--------~g~--~l~E~RRG~d~A~iy~iaFSp~~-s~L  241 (346)
T KOG2111|consen  174 PSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTE--------DGT--LLQELRRGVDRADIYCIAFSPNS-SWL  241 (346)
T ss_pred             ceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcC--------CCc--EeeeeecCCchheEEEEEeCCCc-cEE
Confidence            345568999999999999994 9999999997 7999986        443  45566543  3479999999998 799


Q ss_pred             EEeeCCCcEEEEecCCCC
Q psy4577         314 LSASDDHTICLWDINATP  331 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~~~~  331 (384)
                      |.+|.-|+|.|+.++...
T Consensus       242 avsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  242 AVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EEEcCCCeEEEEEeecCC
Confidence            999999999999998643

>KOG2139|consensus

Probab=99.47  E-value=2.6e-12  Score=103.28  Aligned_cols=104  Identities=18%  Similarity=0.229  Sum_probs=78.3

Q ss_pred             CceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         245 GEVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ..|+++.|.++|. .+++++ .|..|.|||..        .+...|+.-  ..-+.++-+.||||| .+|..+.-|+..+
T Consensus       196 ~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpd--------tg~~~pL~~--~glgg~slLkwSPdg-d~lfaAt~davfr  263 (445)
T KOG2139|consen  196 NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPD--------TGQKIPLIP--KGLGGFSLLKWSPDG-DVLFAATCDAVFR  263 (445)
T ss_pred             ceeeEEEEcCCCC-EEeecccCcceEEEEcCC--------CCCcccccc--cCCCceeeEEEcCCC-CEEEEecccceee
Confidence            5799999999995 777776 56789999987        666666542  233568899999999 6999999999999


Q ss_pred             EEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         324 LWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       324 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      +|+........++       .--++.|...+|+|+|+.+.-+|.
T Consensus       264 lw~e~q~wt~erw-------~lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  264 LWQENQSWTKERW-------ILGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             eehhcccceecce-------eccCCceeeeeecCCCCEEEEEEc
Confidence            9966544311111       113458999999999998776654

>KOG1188|consensus

Probab=99.45  E-value=1.6e-12  Score=103.65  Aligned_cols=106  Identities=12%  Similarity=0.195  Sum_probs=72.5

Q ss_pred             CCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccc-cceEEEEEccCCCcEEEEE----ecCCeEEEEE
Q psy4577           7 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFSWNPNEPWVICSV----SEDNIMQILS   81 (384)
Q Consensus         7 ~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~~l~s~----s~D~~i~vwd   81 (384)
                      +.+.+.+|+.||+|++||++...+            .......+|. .+-+|++-+..+. ++++|    ..|-.+.+||
T Consensus        83 s~h~v~s~ssDG~Vr~wD~Rs~~e------------~a~~~~~~~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwD  149 (376)
T KOG1188|consen   83 SPHGVISCSSDGTVRLWDIRSQAE------------SARISWTQQSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWD  149 (376)
T ss_pred             CCCeeEEeccCCeEEEEEeecchh------------hhheeccCCCCCcceEeeccCcCC-eEEeccccccCceEEEEEE
Confidence            556799999999999999986431            2223334454 4566777665666 67666    3567899999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccc
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTP  149 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~  149 (384)
                      ++..+.                      .+......|  .+.|++++|+|....++     ||-|.++|+...
T Consensus       150 vR~~qq----------------------~l~~~~eSH--~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  150 VRSEQQ----------------------LLRQLNESH--NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             eccccc----------------------hhhhhhhhc--cCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            976311                      122233345  78899999999986655     898999887554

>KOG3881|consensus

Probab=99.45  E-value=1.6e-11  Score=99.71  Aligned_cols=100  Identities=16%  Similarity=0.146  Sum_probs=78.6

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      .-+.+++++...|.+ +++.+|..-|.+..||++         +.......+.|-.+.|++|..+|.+ .+||+||-|..
T Consensus       245 ~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r---------~~kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRy  313 (412)
T KOG3881|consen  245 FLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLR---------GGKLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRY  313 (412)
T ss_pred             cccCcceeeeecCCC-cEEEEecccchhheeccc---------CceeeccccCCccCCcceEEEcCCC-ceEEeecccee
Confidence            346788999999999 599999999999999997         2223344578889999999999998 69999999999


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK  360 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  360 (384)
                      |||+|+.+.+       ++.... -.+.++.+-+.++-+
T Consensus       314 vRIhD~ktrk-------ll~kvY-vKs~lt~il~~~~~n  344 (412)
T KOG3881|consen  314 VRIHDIKTRK-------LLHKVY-VKSRLTFILLRDDVN  344 (412)
T ss_pred             EEEeecccch-------hhhhhh-hhccccEEEecCCcc
Confidence            9999999965       433321 245577777766544

>KOG2394|consensus

Probab=99.44  E-value=2.3e-12  Score=108.72  Aligned_cols=75  Identities=23%  Similarity=0.353  Sum_probs=60.9

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC-----------------
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP-----------------  307 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-----------------  307 (384)
                      +...|++|||||+ ++++|++|-.|.||.+.          ..+.+..-+||..+|+.|+|.|                 
T Consensus       333 GGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~----------erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~  401 (636)
T KOG2394|consen  333 GGLLCVCWSPDGK-YIVTGGEDDLVTVWSFE----------ERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDST  401 (636)
T ss_pred             cceEEEEEcCCcc-EEEecCCcceEEEEEec----------cceEEEeccccccceeeEeeccccccccccccccccccc
Confidence            4578999999996 99999999999999985          2234456678999999999983                 


Q ss_pred             --------------CC----------------CCeEEEeeCCCcEEEEecCCC
Q psy4577         308 --------------SL----------------NGYLLSASDDHTICLWDINAT  330 (384)
Q Consensus       308 --------------~~----------------~~~l~s~s~Dg~i~iwd~~~~  330 (384)
                                    ++                ...|.|.+.|-.+.+||+...
T Consensus       402 ~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD  454 (636)
T KOG2394|consen  402 FSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED  454 (636)
T ss_pred             ccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence                          00                136889999999999999765

>KOG2110|consensus

Probab=99.44  E-value=7.8e-11  Score=95.13  Aligned_cols=80  Identities=20%  Similarity=0.405  Sum_probs=65.9

Q ss_pred             EEeecCCceEEEEEcCCCCcEEEEEeCCCc-EEEEecCCCCCCCCCCCCccceeeecCCCC--ceEEEEeCCCCCCeEEE
Q psy4577         239 IKINHEGEVNRARYMPQNPCVIATKTPSSD-VLVFDYTKHPSKPDPNGECHPDLRLRGHQK--EGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       239 ~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~s~~~~~~l~s  315 (384)
                      ...+|++.+-+++|+++|. +|||+|+.|+ ||||.+.        +++  .+.+|+....  .|.+++|+|++ .+|++
T Consensus       168 ~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~--------~G~--kl~eFRRG~~~~~IySL~Fs~ds-~~L~~  235 (391)
T KOG2110|consen  168 TINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVP--------EGQ--KLYEFRRGTYPVSIYSLSFSPDS-QFLAA  235 (391)
T ss_pred             EEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcC--------Ccc--EeeeeeCCceeeEEEEEEECCCC-CeEEE
Confidence            3448999999999999995 9999999987 6899985        343  3556665433  68899999998 79999


Q ss_pred             eeCCCcEEEEecCCC
Q psy4577         316 ASDDHTICLWDINAT  330 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~  330 (384)
                      .|..++|.|+.+...
T Consensus       236 sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  236 SSNTETVHIFKLEKV  250 (391)
T ss_pred             ecCCCeEEEEEeccc
Confidence            999999999998754

>KOG1240|consensus

Probab=99.43  E-value=7.7e-12  Score=115.39  Aligned_cols=208  Identities=10%  Similarity=0.051  Sum_probs=131.3

Q ss_pred             CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec
Q psy4577          42 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE  121 (384)
Q Consensus        42 ~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (384)
                      ..++..+..|...|+.++.++....+++|||.||+||+|+.....                   .++......+.-+..+
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~-------------------~~~~s~rS~ltys~~~ 1098 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLE-------------------GEGGSARSELTYSPEG 1098 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhh-------------------cCcceeeeeEEEeccC
Confidence            467788889999999999988774489999999999999986531                   1111111111122235


Q ss_pred             cCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCC
Q psy4577         122 WPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQN  197 (384)
Q Consensus       122 ~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (384)
                      .++.++.+.+.+..++    ||.|++.+++.......                                           
T Consensus      1099 sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~------------------------------------------- 1135 (1431)
T KOG1240|consen 1099 SRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKR------------------------------------------- 1135 (1431)
T ss_pred             CceEEEEeccCCCeEEEEcCCCeEEEEEccccccccc-------------------------------------------
Confidence            5677788888777766    77777655433100000                                           


Q ss_pred             eEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCC-cEEEEEeCCCcEEEEecCC
Q psy4577         198 HLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNP-CVIATKTPSSDVLVFDYTK  276 (384)
Q Consensus       198 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~s~s~dg~i~iwd~~~  276 (384)
                        .+.....+                               .......-|..-+|....+ ..++.+...+.|..||++.
T Consensus      1136 --~~~~~ri~-------------------------------n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1136 --VATQVRIP-------------------------------NLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred             --eeeeeecc-------------------------------cccCCCceEEeecccccccceeEEEEEeccceEEecchh
Confidence              00000000                               0000001122222222222 2777888899999999984


Q ss_pred             CCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee-ccCCcEeEEEE
Q psy4577         277 HPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-GHTAVVELELI  355 (384)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~  355 (384)
                      .        ...-......-.+.|++++.+|.+ .++++|..-|.+.+||++=+.       ++..+. .+..+|+.+..
T Consensus      1183 ~--------~~~w~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~-------~i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1183 R--------HDAWRLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRV-------PILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred             h--------hhHHhhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCc-------eeecccCcccCCcceEEe
Confidence            2        111222334445789999999999 799999999999999999877       776665 35578999998


Q ss_pred             ecCCC
Q psy4577         356 ERLTK  360 (384)
Q Consensus       356 sp~~~  360 (384)
                      +|.-+
T Consensus      1247 ~~~~~ 1251 (1431)
T KOG1240|consen 1247 CPTYP 1251 (1431)
T ss_pred             eccCC
Confidence            88776

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=3.1e-11  Score=107.39  Aligned_cols=89  Identities=16%  Similarity=0.176  Sum_probs=56.2

Q ss_pred             eEEEEEcCCCCcEEEEEe-CCC--cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC---C
Q psy4577         247 VNRARYMPQNPCVIATKT-PSS--DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD---H  320 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D---g  320 (384)
                      ...++|+|+|+ .++..+ .++  .|.+||+.        .+...   .+. +........|+||| ++|+..+.+   +
T Consensus       338 ~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~--------~g~~~---~Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~  403 (433)
T PRK04922        338 NARASVSPDGK-KIAMVHGSGGQYRIAVMDLS--------TGSVR---TLT-PGSLDESPSFAPNG-SMVLYATREGGRG  403 (433)
T ss_pred             ccCEEECCCCC-EEEEEECCCCceeEEEEECC--------CCCeE---ECC-CCCCCCCceECCCC-CEEEEEEecCCce
Confidence            34689999997 555433 333  58899985        33322   222 22234567999999 676665543   4


Q ss_pred             cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEec
Q psy4577         321 TICLWDINATPKENRVIDAKTIFTGHTAVVELELIER  357 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp  357 (384)
                      .|+++++...        ....+..+.+.+...+|+|
T Consensus       404 ~L~~~~~~g~--------~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        404 VLAAVSTDGR--------VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEEEECCCC--------ceEEcccCCCCCCCCccCC
Confidence            5777787543        4455555667788889987

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=3.9e-11  Score=106.39  Aligned_cols=105  Identities=10%  Similarity=0.075  Sum_probs=65.8

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC---c
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH---T  321 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg---~  321 (384)
                      +......|+|+|+.++.++..+|...||.+...      .+... ...+.+  ......+|+||| ++|+..+.++   .
T Consensus       284 ~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~------~g~~~-~lt~~g--~~~~~~~~SpDG-~~Ia~~s~~~g~~~  353 (427)
T PRK02889        284 GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS------GGAAQ-RVTFTG--SYNTSPRISPDG-KLLAYISRVGGAFK  353 (427)
T ss_pred             CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC------CCceE-EEecCC--CCcCceEECCCC-CEEEEEEccCCcEE
Confidence            334567899999745445444577778876421      12211 122322  334568999999 6888776654   6


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      |++||+.+++       ... +..+ .......|+|+++.+...+..
T Consensus       354 I~v~d~~~g~-------~~~-lt~~-~~~~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        354 LYVQDLATGQ-------VTA-LTDT-TRDESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             EEEEECCCCC-------eEE-ccCC-CCccCceECCCCCEEEEEEec
Confidence            9999998875       322 2222 234678999999987766543

>KOG0649|consensus

Probab=99.41  E-value=7.1e-12  Score=95.42  Aligned_cols=75  Identities=21%  Similarity=0.308  Sum_probs=60.7

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      -.|+++-..|... -++.++.|+.++-||+.        ++..  ..+++||.+.|.++.--... ..+.||++||++++
T Consensus       115 PeINam~ldP~en-Si~~AgGD~~~y~~dlE--------~G~i--~r~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRv  182 (325)
T KOG0649|consen  115 PEINAMWLDPSEN-SILFAGGDGVIYQVDLE--------DGRI--QREYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRV  182 (325)
T ss_pred             CccceeEeccCCC-cEEEecCCeEEEEEEec--------CCEE--EEEEcCCcceeeeeeecccC-cceeecCCCccEEE
Confidence            3588888898764 44445579999999997        6654  44899999999999884443 47899999999999


Q ss_pred             EecCCCC
Q psy4577         325 WDINATP  331 (384)
Q Consensus       325 wd~~~~~  331 (384)
                      ||.++++
T Consensus       183 Wd~kt~k  189 (325)
T KOG0649|consen  183 WDTKTQK  189 (325)
T ss_pred             Eeccccc
Confidence            9999997

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=4.2e-11  Score=106.15  Aligned_cols=89  Identities=16%  Similarity=0.185  Sum_probs=55.5

Q ss_pred             EEEEEcCCCCcEEEEEeCCC---cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC-Cc--
Q psy4577         248 NRARYMPQNPCVIATKTPSS---DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD-HT--  321 (384)
Q Consensus       248 ~~v~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D-g~--  321 (384)
                      ...+|+|+|+ +++..+.++   .|++||+.        .+...   .+..+ .......|+||| +.|+.++.+ |.  
T Consensus       331 ~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~--------~g~~~---~lt~~-~~~~~p~~spdg-~~l~~~~~~~g~~~  396 (427)
T PRK02889        331 TSPRISPDGK-LLAYISRVGGAFKLYVQDLA--------TGQVT---ALTDT-TRDESPSFAPNG-RYILYATQQGGRSV  396 (427)
T ss_pred             CceEECCCCC-EEEEEEccCCcEEEEEEECC--------CCCeE---EccCC-CCccCceECCCC-CEEEEEEecCCCEE
Confidence            3568999996 666555443   59999985        33322   22222 234678999999 566666644 33  


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCcEeEEEEecC
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIERL  358 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  358 (384)
                      +.+-++. ++       ....+..+.+.+...+|+|-
T Consensus       397 l~~~~~~-g~-------~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        397 LAAVSSD-GR-------IKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEEECC-CC-------ceEEeecCCCCCCCCccCCC
Confidence            4444553 33       44555556778888999884

>KOG1354|consensus

Probab=99.40  E-value=5.3e-12  Score=100.83  Aligned_cols=95  Identities=16%  Similarity=0.202  Sum_probs=64.4

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC------CCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK------PDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      ..-|++..|+|..-++|+-.+.-|+||+.|+|+...-      .+........--+.+--..|..+.|++.| +|++|-+
T Consensus       213 teVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRD  291 (433)
T KOG1354|consen  213 TEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRD  291 (433)
T ss_pred             HHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEec
Confidence            3458889999987678888899999999999842110      00011111111223333578899999999 8998876


Q ss_pred             CCCcEEEEecCCCCCCCccccceeeeecc
Q psy4577         318 DDHTICLWDINATPKENRVIDAKTIFTGH  346 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h  346 (384)
                      . -+|++||+....+      ++.+++-|
T Consensus       292 y-ltvk~wD~nme~~------pv~t~~vh  313 (433)
T KOG1354|consen  292 Y-LTVKLWDLNMEAK------PVETYPVH  313 (433)
T ss_pred             c-ceeEEEeccccCC------cceEEeeh
Confidence            5 5999999976543      77776655

>KOG1272|consensus

Probab=99.37  E-value=1.4e-12  Score=107.99  Aligned_cols=98  Identities=12%  Similarity=0.169  Sum_probs=79.0

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      .+.+..++-+|-+. .+-+|..+|+|.+|.-          ...+|+..+-.|.++|.+|++.++| +|+||.|.|..++
T Consensus       251 ~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP----------~skePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~k  318 (545)
T KOG1272|consen  251 AGRTDVMKQNPYNA-VIHLGHSNGTVSLWSP----------NSKEPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVK  318 (545)
T ss_pred             CCccchhhcCCccc-eEEEcCCCceEEecCC----------CCcchHHHHHhcCCCcceEEECCCC-cEEeeccccccee
Confidence            45667777889885 8889999999999985          3456788888999999999999999 8999999999999


Q ss_pred             EEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577         324 LWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK  361 (384)
Q Consensus       324 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  361 (384)
                      |||+++..       .+.++.. ..+...+++|.-|-.
T Consensus       319 IWDlR~~~-------ql~t~~t-p~~a~~ls~SqkglL  348 (545)
T KOG1272|consen  319 IWDLRNFY-------QLHTYRT-PHPASNLSLSQKGLL  348 (545)
T ss_pred             Eeeecccc-------ccceeec-CCCccccccccccce
Confidence            99999876       4444443 345667777765543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.36  E-value=2.1e-11  Score=95.12  Aligned_cols=101  Identities=14%  Similarity=0.235  Sum_probs=76.7

Q ss_pred             cCCceEEEEEcCCCCcEEEE-EeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC--
Q psy4577         243 HEGEVNRARYMPQNPCVIAT-KTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD--  319 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D--  319 (384)
                      ..++|.+++|+|++..++++ |..++.|.+||++           ..++..+  +...++.+.|+|+| ++|+.|+.+  
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-----------~~~i~~~--~~~~~n~i~wsP~G-~~l~~~g~~n~  123 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-----------GKKIFSF--GTQPRNTISWSPDG-RFLVLAGFGNL  123 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-----------ccEeEee--cCCCceEEEECCCC-CEEEEEEccCC
Confidence            45679999999999744333 4467899999984           2344444  35678899999999 799988754  


Q ss_pred             -CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         320 -HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       320 -g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                       |.|.+||+++.+       .+.+.. | ..++.++|+|+|+.+++.-
T Consensus       124 ~G~l~~wd~~~~~-------~i~~~~-~-~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen  124 NGDLEFWDVRKKK-------KISTFE-H-SDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             CcEEEEEECCCCE-------Eeeccc-c-CcEEEEEEcCCCCEEEEEE
Confidence             679999999776       666654 3 3478999999999887653

>KOG1334|consensus

Probab=99.36  E-value=8.9e-12  Score=104.00  Aligned_cols=251  Identities=16%  Similarity=0.185  Sum_probs=150.9

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCcc
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFD   89 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~   89 (384)
                      -|++++.||++++=.+...+.           .+-...+..|.++|.-++.-|+.++-+.|++.|+.++-.|+.+...-.
T Consensus       201 ti~~~s~dgqvr~s~i~~t~~-----------~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~  269 (559)
T KOG1334|consen  201 TIVTSSRDGQVRVSEILETGY-----------VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE  269 (559)
T ss_pred             CceeccccCceeeeeeccccc-----------eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence            589999999999877654331           122344567889999999999999889999999999999987741100


Q ss_pred             chhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeecccccccc
Q psy4577          90 DAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWPS  164 (384)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~~  164 (384)
                      .           ...+.+....         ....++++..|-....+     |..++++|.+....-.. ..       
T Consensus       270 ~-----------~~cr~~~~~~---------~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~-n~-------  321 (559)
T KOG1334|consen  270 K-----------FVCREADEKE---------RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN-NG-------  321 (559)
T ss_pred             e-----------eeeeccCCcc---------ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc-cc-------
Confidence            0           0001111100         11234677777665433     56667766543211100 00       


Q ss_pred             eeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCC---cc------CCCCce
Q psy4577         165 LTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGG---FG------SVSGKI  235 (384)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~---~~------~~~~~~  235 (384)
                      ..-.+.|....                   ......|..+.++.+++.+++...|..+..+..   .+      ......
T Consensus       322 ~~~~f~p~hl~-------------------~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~  382 (559)
T KOG1334|consen  322 VLDKFCPHHLV-------------------EDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQY  382 (559)
T ss_pred             hhhhcCCcccc-------------------ccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhc
Confidence            00011111110                   122334666666666666665555554443311   01      000011


Q ss_pred             eEEEEeecC--CceEEEEEc-CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCe
Q psy4577         236 EIEIKINHE--GEVNRARYM-PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGY  312 (384)
Q Consensus       236 ~~~~~~~~~--~~v~~v~~~-p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~  312 (384)
                      .....++|.  ..|.++-|- |.. .++++||+-|.|.||+-.        .+  +.+..+.|-..-|+||.=+|.-| +
T Consensus       383 ~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~--------t~--eii~~MegDr~VVNCLEpHP~~P-v  450 (559)
T KOG1334|consen  383 VKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKK--------TG--EIIRFMEGDRHVVNCLEPHPHLP-V  450 (559)
T ss_pred             cchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecc--------hh--HHHHHhhcccceEeccCCCCCCc-h
Confidence            112245665  467788765 455 599999999999999975        33  34445666555899999999986 9


Q ss_pred             EEEeeCCCcEEEEecCCC
Q psy4577         313 LLSASDDHTICLWDINAT  330 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~~  330 (384)
                      |||+|-|..|+||-..+.
T Consensus       451 LAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  451 LASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             hhccCCccceeeecCCcc
Confidence            999999999999987544

>KOG1523|consensus

Probab=99.35  E-value=1.6e-11  Score=97.23  Aligned_cols=121  Identities=15%  Similarity=0.103  Sum_probs=99.7

Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      .+.+..|...|++|+|+|.. +.+++++.|..-++|....       .+..+|...+..|...++++.|+|.. +.||+|
T Consensus        48 ~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~-------~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVg  118 (361)
T KOG1523|consen   48 AHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPS-------GGTWKPTLVLLRINRAATCVKWSPKE-NKFAVG  118 (361)
T ss_pred             ceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCC-------CCeeccceeEEEeccceeeEeecCcC-ceEEec
Confidence            45566789999999999988 4899999999999999842       67788888899999999999999997 899999


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccccc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLE  369 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~  369 (384)
                      |.-..|.||-++..+   .++...++-+-+.+.|++++|||.+-.+++.|...
T Consensus       119 Sgar~isVcy~E~EN---dWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~  168 (361)
T KOG1523|consen  119 SGARLISVCYYEQEN---DWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG  168 (361)
T ss_pred             cCccEEEEEEEeccc---ceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence            999999999887654   34334444445778899999999998877766433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.4e-10  Score=103.26  Aligned_cols=68  Identities=16%  Similarity=0.230  Sum_probs=46.8

Q ss_pred             CCCCCCCceEEEeeC---CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCe--
Q psy4577           2 QWSPHNETILASSGT---DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI--   76 (384)
Q Consensus         2 ~fsp~~~~~lat~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~--   76 (384)
                      +|+|||+. ||..+.   +..|.+||+.+..            .+   .+..+.+.+.+.+|+|||+.++++.+.++.  
T Consensus       208 ~wSpDG~~-lay~s~~~g~~~i~~~dl~~g~------------~~---~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~  271 (435)
T PRK05137        208 RFSPNRQE-ITYMSYANGRPRVYLLDLETGQ------------RE---LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD  271 (435)
T ss_pred             EECCCCCE-EEEEEecCCCCEEEEEECCCCc------------EE---EeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence            69999984 665543   4689999997521            12   233455677889999999966677777766  


Q ss_pred             EEEEEcccC
Q psy4577          77 MQILSVVCV   85 (384)
Q Consensus        77 i~vwd~~~~   85 (384)
                      |.+||+.++
T Consensus       272 Iy~~d~~~~  280 (435)
T PRK05137        272 IYTMDLRSG  280 (435)
T ss_pred             EEEEECCCC
Confidence            555566553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.34  E-value=7.5e-10  Score=95.29  Aligned_cols=270  Identities=10%  Similarity=0.044  Sum_probs=136.6

Q ss_pred             eE-EEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCc
Q psy4577          10 IL-ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPF   88 (384)
Q Consensus        10 ~l-at~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~   88 (384)
                      ++ ++-..++.|.|.|..+              .+.+..+......-..+.|+|||+ .++.++.|+.|.++|+.+.+.+
T Consensus         7 l~~V~~~~~~~v~viD~~t--------------~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v   71 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGAT--------------NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVV   71 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT---------------SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEE
T ss_pred             EEEEEecCCCEEEEEECCC--------------CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCcccEE
Confidence            45 4556689999999986              466666665443445678999999 4556789999999999886322


Q ss_pred             cchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeeccccccc
Q psy4577          89 DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWP  163 (384)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~  163 (384)
                                   +..+.              .....+++++++|++++     .+++.++|..+......+........
T Consensus        72 -------------~~i~~--------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~  124 (369)
T PF02239_consen   72 -------------ATIKV--------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD  124 (369)
T ss_dssp             -------------EEEE---------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT
T ss_pred             -------------EEEec--------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccc
Confidence                         11111              22345799999999887     78899988877555444333221100


Q ss_pred             ceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeec
Q psy4577         164 SLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINH  243 (384)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  243 (384)
                      .              ....+.. +...    ..+...+..+.   +.+++....+..            ...........
T Consensus       125 ~--------------~~~Rv~a-Iv~s----~~~~~fVv~lk---d~~~I~vVdy~d------------~~~~~~~~i~~  170 (369)
T PF02239_consen  125 G--------------PESRVAA-IVAS----PGRPEFVVNLK---DTGEIWVVDYSD------------PKNLKVTTIKV  170 (369)
T ss_dssp             T--------------S---EEE-EEE-----SSSSEEEEEET---TTTEEEEEETTT------------SSCEEEEEEE-
T ss_pred             c--------------cCCCcee-EEec----CCCCEEEEEEc---cCCeEEEEEecc------------ccccceeeecc
Confidence            0              0000000 0000    01111222221   111111111111            11112233334


Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC------------------------------------------
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP------------------------------------------  281 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~------------------------------------------  281 (384)
                      ........|+|++++++++......|-++|........                                          
T Consensus       171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~  250 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP  250 (369)
T ss_dssp             -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred             cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc
Confidence            45566788899887556655566677777765321100                                          


Q ss_pred             ---CCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe----eCCCcEEEEecCCCCCCCccccceeeeecc-CCcEeEE
Q psy4577         282 ---DPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA----SDDHTICLWDINATPKENRVIDAKTIFTGH-TAVVELE  353 (384)
Q Consensus       282 ---~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~~  353 (384)
                         ......+.+..+....++ .-++.||++ .++...    ...++|.++|.++.+       .+.++... ...+..+
T Consensus       251 v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~tl~-------~~~~i~~~~~~~~~h~  321 (369)
T PF02239_consen  251 VSVHDDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKTLK-------VVKTITPGPGKRVVHM  321 (369)
T ss_dssp             TT-STTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCGTE-------EEE-HHHHHT--EEEE
T ss_pred             cccchhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcCcc-------eeEEEeccCCCcEecc
Confidence               001122233334433344 678889998 677776    455899999999986       66666532 2358999


Q ss_pred             EEecCCCcccc
Q psy4577         354 LIERLTKKADP  364 (384)
Q Consensus       354 ~~sp~~~~~~~  364 (384)
                      .|+++|+.+--
T Consensus       322 ef~~dG~~v~v  332 (369)
T PF02239_consen  322 EFNPDGKEVWV  332 (369)
T ss_dssp             EE-TTSSEEEE
T ss_pred             EECCCCCEEEE
Confidence            99999996443

...

>KOG1517|consensus

Probab=99.33  E-value=5.3e-11  Score=108.47  Aligned_cols=207  Identities=13%  Similarity=0.169  Sum_probs=128.6

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      +|...... |.++|.-+.|+|||+..+.             .+...-.+-...|+++.=+.....+++.|-.||.||+||
T Consensus      1172 dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~-------------~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD 1237 (1387)
T KOG1517|consen 1172 DWQQQSGH-LLVTGDVRSIRIWDAHKEQ-------------VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYD 1237 (1387)
T ss_pred             ehhhhCCe-EEecCCeeEEEEEecccce-------------eEeecccCCCccceeecccccCCceEEEeecCCceEEee
Confidence            35444444 4444457899999998632             222222344567888876554444899999999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCcee-ee----cceeeeeccccccccceee
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR-VI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      ......-          ..+..|           ..|....+|..+.+-+.|-. ++    +|.|++||++.......  
T Consensus      1238 ~R~a~~d----------s~v~~~-----------R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~-- 1294 (1387)
T KOG1517|consen 1238 RRMAPPD----------SLVCVY-----------REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF-- 1294 (1387)
T ss_pred             cccCCcc----------ccceee-----------cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccc--
Confidence            8764110          112223           23433445778888887644 43    88899988865311100  


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                                                ..|                                   
T Consensus      1295 ------------------------------------------~~i----------------------------------- 1297 (1387)
T KOG1517|consen 1295 ------------------------------------------LTI----------------------------------- 1297 (1387)
T ss_pred             ------------------------------------------cee-----------------------------------
Confidence                                                      000                                   


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCCCCCeEEE
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~~l~s  315 (384)
                       .......+..+++..++..+ ++|+|+. +.|+||++......     ..+.--.|.+ -.+.+.|++|||.. -+||.
T Consensus      1298 -v~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~-----~~k~n~~F~~q~~gs~scL~FHP~~-~llAa 1368 (1387)
T KOG1517|consen 1298 -VAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLN-----IIKYNPGFMGQRIGSVSCLAFHPHR-LLLAA 1368 (1387)
T ss_pred             -eeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhc-----ccccCcccccCcCCCcceeeecchh-Hhhhh
Confidence             00000012478888899886 9999987 99999999532211     1111112222 23477999999997 69999


Q ss_pred             eeCCCcEEEEecCCCC
Q psy4577         316 ASDDHTICLWDINATP  331 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~  331 (384)
                      |+.|.+|.||......
T Consensus      1369 G~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1369 GSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ccCCceEEEeecCCcC
Confidence            9999999999876553

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=3.8e-10  Score=100.59  Aligned_cols=103  Identities=12%  Similarity=0.085  Sum_probs=62.8

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCC--cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC--
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSS--DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD--  319 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D--  319 (384)
                      .+......|+|+|+.++.+...+|  .|+++|+.        .+...   .+..+...+....|+|+| ++|+..+.+  
T Consensus       289 ~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~--------g~~~~---~lt~~~~~~~~~~~SpdG-~~ia~~~~~~~  356 (435)
T PRK05137        289 PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD--------GSNPR---RISFGGGRYSTPVWSPRG-DLIAFTKQGGG  356 (435)
T ss_pred             CCccCceeEcCCCCEEEEEECCCCCCeEEEEECC--------CCCeE---EeecCCCcccCeEECCCC-CEEEEEEcCCC
Confidence            334556899999974444433444  57777764        22222   233334456778999999 677766543  


Q ss_pred             -CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         320 -HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       320 -g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                       ..|.+||+.++.        ...+. ....+....|+|||+.+.-...
T Consensus       357 ~~~i~~~d~~~~~--------~~~lt-~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        357 QFSIGVMKPDGSG--------ERILT-SGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             ceEEEEEECCCCc--------eEecc-CCCCCCCCeECCCCCEEEEEEc
Confidence             368888876543        22222 1234678899999997765443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=1.9e-10  Score=102.38  Aligned_cols=102  Identities=10%  Similarity=0.067  Sum_probs=61.6

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCc--EEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC--
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSD--VLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH--  320 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg--  320 (384)
                      ......+|+|+|+.++.+...+|.  |+++|+.        .+....+ ++  +.......+|+|+| ++|+..+.++  
T Consensus       292 ~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~--------~g~~~~l-t~--~g~~~~~~~~SpDG-~~Ia~~~~~~~~  359 (433)
T PRK04922        292 GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS--------GGSAERL-TF--QGNYNARASVSPDG-KKIAMVHGSGGQ  359 (433)
T ss_pred             CCccceEECCCCCEEEEEECCCCCceEEEEECC--------CCCeEEe-ec--CCCCccCEEECCCC-CEEEEEECCCCc
Confidence            334568999999744444444555  5555553        2222221 22  23345578999999 6777655433  


Q ss_pred             -cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         321 -TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       321 -~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                       .|.+||+.+++       .. .+. +........|+|+|+.+.....
T Consensus       360 ~~I~v~d~~~g~-------~~-~Lt-~~~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        360 YRIAVMDLSTGS-------VR-TLT-PGSLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             eeEEEEECCCCC-------eE-ECC-CCCCCCCceECCCCCEEEEEEe
Confidence             69999998775       32 332 2224556799999997765543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=4.3e-10  Score=99.70  Aligned_cols=104  Identities=11%  Similarity=0.107  Sum_probs=63.1

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC---Cc
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD---HT  321 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D---g~  321 (384)
                      ..+....|+|+|+.++.+...++...||.+...      .+..   ..+..+........|+||| ++|+..+.+   ..
T Consensus       287 ~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~------~g~~---~~lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~  356 (429)
T PRK03629        287 SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN------GGAP---QRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQH  356 (429)
T ss_pred             CCcCceEECCCCCEEEEEeCCCCCceEEEEECC------CCCe---EEeecCCCCccCEEECCCC-CEEEEEEccCCCce
Confidence            346778999999744444444556666654311      2222   2233333456678999999 677665543   35


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      |++||+.+++       . ..+... .......|+|||..+...+.
T Consensus       357 I~~~dl~~g~-------~-~~Lt~~-~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        357 IAKQDLATGG-------V-QVLTDT-FLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             EEEEECCCCC-------e-EEeCCC-CCCCCceECCCCCEEEEEEc
Confidence            8889998774       2 222211 12346789999998776654

>KOG4497|consensus

Probab=99.27  E-value=7.8e-10  Score=88.24  Aligned_cols=99  Identities=7%  Similarity=0.100  Sum_probs=67.2

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCC--CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPS--SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      ...+.-++|++|.. ++||-.+.  ..+-+||++..           .+...--...+|....|+|..+ .|+.+....+
T Consensus       318 k~g~g~lafs~Ds~-y~aTrnd~~PnalW~Wdlq~l-----------~l~avLiQk~piraf~WdP~~p-rL~vctg~sr  384 (447)
T KOG4497|consen  318 KCGAGKLAFSCDST-YAATRNDKYPNALWLWDLQNL-----------KLHAVLIQKHPIRAFEWDPGRP-RLVVCTGKSR  384 (447)
T ss_pred             ccccceeeecCCce-EEeeecCCCCceEEEEechhh-----------hhhhhhhhccceeEEEeCCCCc-eEEEEcCCce
Confidence            45677899999984 88875432  56889999621           1112222345799999999986 5555555668


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                      +++|-.....       .+.. .+-.-.|.+++|+-+|..+.
T Consensus       385 LY~W~psg~~-------~V~v-P~~GF~i~~l~W~~~g~~i~  418 (447)
T KOG4497|consen  385 LYFWAPSGPR-------VVGV-PKKGFNIQKLQWLQPGEFIV  418 (447)
T ss_pred             EEEEcCCCce-------EEec-CCCCceeeeEEecCCCcEEE
Confidence            9999887754       3332 22335699999999888643

>KOG2041|consensus

Probab=99.27  E-value=3.1e-10  Score=99.54  Aligned_cols=273  Identities=13%  Similarity=0.191  Sum_probs=152.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccC-CCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE-DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      ++|+.... ++|+|+.||.++|-.+.+.....+.. -+.......-.++.||+..|.-+.|+.+.+ .|-|...+|.|.+
T Consensus        20 ~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~GlIiV   97 (1189)
T KOG2041|consen   20 AEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSDTSGLIIV   97 (1189)
T ss_pred             EEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccCCCceEEE
Confidence            35777765 89999999999999887643221111 111222234567899999999999998888 5668888999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |-+-.+.........           .+             .+-|.+++|..+|+.+.    ||.|.+-.+++.+++...
T Consensus        98 WmlykgsW~EEMiNn-----------Rn-------------KSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKe  153 (1189)
T KOG2041|consen   98 WMLYKGSWCEEMINN-----------RN-------------KSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKE  153 (1189)
T ss_pred             EeeecccHHHHHhhC-----------cC-------------ccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchh
Confidence            998765322111000           00             23366899999998876    777766555444443211


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      .....   ...+.|.++...                                     .+...-.++...++..++...++
T Consensus       154 Lkg~~---l~hv~ws~D~~~-------------------------------------~Lf~~ange~hlydnqgnF~~Kl  193 (1189)
T KOG2041|consen  154 LKGQL---LAHVLWSEDLEQ-------------------------------------ALFKKANGETHLYDNQGNFERKL  193 (1189)
T ss_pred             cchhe---ccceeecccHHH-------------------------------------HHhhhcCCcEEEecccccHHHhh
Confidence            10000   012445444321                                     00000000000000000000000


Q ss_pred             eEEE-------EeecCCceEEEEE--------cCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCce
Q psy4577         236 EIEI-------KINHEGEVNRARY--------MPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEG  300 (384)
Q Consensus       236 ~~~~-------~~~~~~~v~~v~~--------~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i  300 (384)
                      ....       .......|-.+.|        -|+-+ .||.+-.+|.+.|-.-         .+...|...-.|  -.|
T Consensus       194 ~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~---------eND~~Pvv~dtg--m~~  261 (1189)
T KOG2041|consen  194 EKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRS---------ENDPEPVVVDTG--MKI  261 (1189)
T ss_pred             hhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhh---------cCCCCCeEEecc--cEe
Confidence            0000       0001111333333        25666 7888899999988543         233445433333  578


Q ss_pred             EEEEeCCCCCCeEEEeeCCC---------cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577         301 YGLSWNPSLNGYLLSASDDH---------TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK  360 (384)
Q Consensus       301 ~~~~~s~~~~~~l~s~s~Dg---------~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  360 (384)
                      ..+.|+++| ..||.+|.|.         .|.++..- +.       .+.+++-....|++++|--.|-
T Consensus       262 vgakWnh~G-~vLAvcG~~~da~~~~d~n~v~Fysp~-G~-------i~gtlkvpg~~It~lsWEg~gL  321 (1189)
T KOG2041|consen  262 VGAKWNHNG-AVLAVCGNDSDADEPTDSNKVHFYSPY-GH-------IVGTLKVPGSCITGLSWEGTGL  321 (1189)
T ss_pred             ecceecCCC-cEEEEccCcccccCccccceEEEeccc-hh-------heEEEecCCceeeeeEEcCCce
Confidence            999999999 6999999773         33433322 22       5667776677899999976553

>KOG1240|consensus

Probab=99.26  E-value=8e-10  Score=102.53  Aligned_cols=78  Identities=14%  Similarity=0.181  Sum_probs=58.7

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec-CCCCceEEEEeCCCCC--CeEEEee--
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR-GHQKEGYGLSWNPSLN--GYLLSAS--  317 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~s~~~~--~~l~s~s--  317 (384)
                      ..|.|++++.+|.+ +++++|+..|.+-+||+|-        +.  ++..+. ++..+|..+..+|.-+  .+.++++  
T Consensus      1194 ~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF--------~~--~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRF--------RV--PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred             cccceeEEEecCCc-eEEEEecCCceEEEEEeec--------Cc--eeecccCcccCCcceEEeeccCCCCceEEEeccc
Confidence            45789999999988 5999999999999999973        21  333332 3457888888887543  3555554  


Q ss_pred             CCCcEEEEecCCCC
Q psy4577         318 DDHTICLWDINATP  331 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~  331 (384)
                      ..+-|-+|++.++.
T Consensus      1263 ~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1263 SNNEVSTWNMETGL 1276 (1431)
T ss_pred             CCCceeeeecccCc
Confidence            47899999999986

>KOG0974|consensus

Probab=99.25  E-value=6.9e-11  Score=107.50  Aligned_cols=149  Identities=19%  Similarity=0.227  Sum_probs=117.3

Q ss_pred             CCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEc
Q psy4577           3 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSV   82 (384)
Q Consensus         3 fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~   82 (384)
                      ++++.= ++++|+.-+.|.+|++....           .+.   .+.||.+.|.++.|+.+|. +++|+|+|+++|+|++
T Consensus       141 ~s~~~~-~i~~gsv~~~iivW~~~~dn-----------~p~---~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i  204 (967)
T KOG0974|consen  141 DSAEEL-YIASGSVFGEIIVWKPHEDN-----------KPI---RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPI  204 (967)
T ss_pred             ccCcEE-EEEeccccccEEEEeccccC-----------Ccc---eecccCCceEEEEEccCCc-EEEEEecCcceeeeec
Confidence            344443 68899999999999987311           111   5689999999999999999 7889999999999999


Q ss_pred             ccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeecceeeeeccccccccceeecccccc
Q psy4577          83 VCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEW  162 (384)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~  162 (384)
                      ++.+..                                                                          
T Consensus       205 ~s~~~~--------------------------------------------------------------------------  210 (967)
T KOG0974|consen  205 DSREVL--------------------------------------------------------------------------  210 (967)
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            773110                                                                          


Q ss_pred             cceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEee
Q psy4577         163 PSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKIN  242 (384)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  242 (384)
                                                                                                .....+
T Consensus       211 --------------------------------------------------------------------------~~~~fg  216 (967)
T KOG0974|consen  211 --------------------------------------------------------------------------GCTGFG  216 (967)
T ss_pred             --------------------------------------------------------------------------Cccccc
Confidence                                                                                      000127


Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC-ceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK-EGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      |...|..++|.|+   .++|++.|-+.++|+..         +.  .+..+.+|.. .|..++..++. -.++|++.|++
T Consensus       217 HsaRvw~~~~~~n---~i~t~gedctcrvW~~~---------~~--~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~  281 (967)
T KOG0974|consen  217 HSARVWACCFLPN---RIITVGEDCTCRVWGVN---------GT--QLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDST  281 (967)
T ss_pred             ccceeEEEEeccc---eeEEeccceEEEEEecc---------cc--eehhhhhhhhcceeEEEEcCCc-eEEEeeccCcc
Confidence            8889999999996   78999999999999764         22  2336777864 79999999987 69999999999


Q ss_pred             EEEEecCCC
Q psy4577         322 ICLWDINAT  330 (384)
Q Consensus       322 i~iwd~~~~  330 (384)
                      +++||....
T Consensus       282 lk~~~l~~r  290 (967)
T KOG0974|consen  282 LKLWDLNGR  290 (967)
T ss_pred             hhhhhhhcc
Confidence            999998764

>KOG0644|consensus

Probab=99.24  E-value=3e-11  Score=107.37  Aligned_cols=222  Identities=12%  Similarity=0.150  Sum_probs=147.3

Q ss_pred             ecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEE
Q psy4577          48 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTA  127 (384)
Q Consensus        48 ~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  127 (384)
                      +.||..+|+|+.|...|. .+++|++|..++||.+++..                        +.....||  ...+..+
T Consensus       186 LlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~------------------------~lAs~rGh--s~ditdl  238 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETAR------------------------CLASCRGH--SGDITDL  238 (1113)
T ss_pred             HHhhhhheeeeeeccccc-eEeecCccceeeeeeccchh------------------------hhccCCCC--ccccchh
Confidence            458999999999999999 66799999999999987742                        22344566  5667777


Q ss_pred             EEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEE
Q psy4577         128 QWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIAS  203 (384)
Q Consensus       128 ~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  203 (384)
                      +.+.....++    |..|++|.+........+.++...  +.++++.|-.                              
T Consensus       239 avs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtga--vtaiafsP~~------------------------------  286 (1113)
T KOG0644|consen  239 AVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGA--VTAIAFSPRA------------------------------  286 (1113)
T ss_pred             ccchhhhhhhhcccCceEEEEecCCCchHHHHhccccc--eeeeccCccc------------------------------
Confidence            7777776666    788999999888777766666543  2233333321                              


Q ss_pred             eecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCC
Q psy4577         204 VQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDP  283 (384)
Q Consensus       204 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  283 (384)
                                 ...-|+.++.|+..+......+.........-+.++.|..++. -++|++.|+.-+.|.+.        
T Consensus       287 -----------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~-~f~Tgs~d~ea~n~e~~--------  346 (1113)
T KOG0644|consen  287 -----------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD-RFLTGSRDGEARNHEFE--------  346 (1113)
T ss_pred             -----------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc-ccccccCCcccccchhh--------
Confidence                       1111222222211100000000000112235567788888884 88999999999998874        


Q ss_pred             CCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         284 NGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       284 ~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                              .+..+...+.-+.++.+-+.+.+++-.+-.+++|++.++.       .++.+.+|...++.+.+||-++.++
T Consensus       347 --------~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~-------l~H~l~ghsd~~yvLd~Hpfn~ri~  411 (1113)
T KOG0644|consen  347 --------QLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ-------LLHNLMGHSDEVYVLDVHPFNPRIA  411 (1113)
T ss_pred             --------HhhhhccceEEEeccccccccceeeeeeeEeeeeecccch-------hhhhhcccccceeeeeecCCCcHhh
Confidence                    2233433344444444443578888889999999999998       8999999999999999999877433

>KOG2321|consensus

Probab=99.24  E-value=8.1e-10  Score=94.48  Aligned_cols=105  Identities=12%  Similarity=0.130  Sum_probs=77.5

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC-----ceEEEEeCCCCCCeEEEee
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK-----EGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~i~~~~~s~~~~~~l~s~s  317 (384)
                      ..+.+++|..++-.. +|++|+.+|.|..||.+..+..    +....-..+..|.+     .|++++|+.+| ..++.|.
T Consensus       174 ~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv----~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGt  247 (703)
T KOG2321|consen  174 DSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRV----GTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGT  247 (703)
T ss_pred             ccccceeeeecCccc-eEEecccCceEEEecchhhhhh----eeeecccccCCCccccccCcceEEEecCCc-eeEEeec
Confidence            457899999999885 9999999999999998853321    11111111222322     59999999998 8999999


Q ss_pred             CCCcEEEEecCCCCCCCccccceeee-eccCCcEeEEEEecCCC
Q psy4577         318 DDHTICLWDINATPKENRVIDAKTIF-TGHTAVVELELIERLTK  360 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~  360 (384)
                      .+|.|.|||+++.+       ++..- .+..-+|..+.|.+.+.
T Consensus       248 s~G~v~iyDLRa~~-------pl~~kdh~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  248 STGSVLIYDLRASK-------PLLVKDHGYELPIKKLDWQDTDQ  284 (703)
T ss_pred             cCCcEEEEEcccCC-------ceeecccCCccceeeecccccCC
Confidence            99999999999987       54432 34556899999988743

>KOG1272|consensus

Probab=99.22  E-value=3.8e-11  Score=99.75  Aligned_cols=105  Identities=16%  Similarity=0.114  Sum_probs=69.5

Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      +..+..|.++|.+|++.++| +++||.+.|..++|||++..        .  .+.++.. .-+...+++|..|  +|| +
T Consensus       286 LvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~--------~--ql~t~~t-p~~a~~ls~Sqkg--lLA-~  350 (545)
T KOG1272|consen  286 LVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNF--------Y--QLHTYRT-PHPASNLSLSQKG--LLA-L  350 (545)
T ss_pred             HHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeeccc--------c--ccceeec-CCCcccccccccc--cee-e
Confidence            44455899999999999999 59999999999999999732        1  2223222 2356788888775  444 4


Q ss_pred             eCCCcEEEEe-cCCCCCCCccccceeeeecc--CCcEeEEEEecCCCc
Q psy4577         317 SDDHTICLWD-INATPKENRVIDAKTIFTGH--TAVVELELIERLTKK  361 (384)
Q Consensus       317 s~Dg~i~iwd-~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~  361 (384)
                      |....|.||. .-.+...     .-..+..|  .++|.++.|+|-+..
T Consensus       351 ~~G~~v~iw~d~~~~s~~-----~~~pYm~H~~~~~V~~l~FcP~EDv  393 (545)
T KOG1272|consen  351 SYGDHVQIWKDALKGSGH-----GETPYMNHRCGGPVEDLRFCPYEDV  393 (545)
T ss_pred             ecCCeeeeehhhhcCCCC-----CCcchhhhccCcccccceeccHHHe
Confidence            4445899994 3332211     11112223  347999999997764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2.8e-09  Score=94.92  Aligned_cols=68  Identities=19%  Similarity=0.276  Sum_probs=42.9

Q ss_pred             CCCCCCCceEEEeeC-CC--eEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCe--
Q psy4577           2 QWSPHNETILASSGT-DR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI--   76 (384)
Q Consensus         2 ~fsp~~~~~lat~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~--   76 (384)
                      +|||||+. ||..+. ++  .|.+||+.+..            .+.+....+   .....+|+|||+.++++.+.++.  
T Consensus       224 ~wSPDG~~-La~~s~~~g~~~L~~~dl~tg~------------~~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~  287 (448)
T PRK04792        224 AWSPDGRK-LAYVSFENRKAEIFVQDIYTQV------------REKVTSFPG---INGAPRFSPDGKKLALVLSKDGQPE  287 (448)
T ss_pred             eECCCCCE-EEEEEecCCCcEEEEEECCCCC------------eEEecCCCC---CcCCeeECCCCCEEEEEEeCCCCeE
Confidence            69999985 554433 33  58888886521            233333333   34478999999977666777776  


Q ss_pred             EEEEEcccC
Q psy4577          77 MQILSVVCV   85 (384)
Q Consensus        77 i~vwd~~~~   85 (384)
                      |.++|+.++
T Consensus       288 Iy~~dl~tg  296 (448)
T PRK04792        288 IYVVDIATK  296 (448)
T ss_pred             EEEEECCCC
Confidence            555566553

>KOG0280|consensus

Probab=99.19  E-value=3.1e-09  Score=83.54  Aligned_cols=117  Identities=15%  Similarity=0.025  Sum_probs=88.3

Q ss_pred             EEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC
Q psy4577         239 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       239 ~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      ...+|.-+..-..|+-..++++.+|++|+.+.-||+|..       +.+ .....+-|...|.+|.-+|..+.+|+||+.
T Consensus       160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p-------~~~-i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY  231 (339)
T KOG0280|consen  160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP-------KTF-IWHNSKVHTSGVVSIYSSPPKPTYIATGSY  231 (339)
T ss_pred             cccccceeeeeeecccCCCceEEecCCCceEEEEEecCC-------cce-eeecceeeecceEEEecCCCCCceEEEecc
Confidence            345788889999999888899999999999999999731       111 112245588899999999877789999999


Q ss_pred             CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC-cccccccccc
Q psy4577         319 DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK-KADPVCTLEK  370 (384)
Q Consensus       319 Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-~~~~~c~~~~  370 (384)
                      |-.|++||.++..+      |+..-. -.+.|+-+.++|... .+.+.|+-++
T Consensus       232 De~i~~~DtRnm~k------Pl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G  277 (339)
T KOG0280|consen  232 DECIRVLDTRNMGK------PLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG  277 (339)
T ss_pred             ccceeeeehhcccC------ccccCc-cccceEEEEecchhhhHHHHHHHhcC
Confidence            99999999996442      544332 347899999999765 3444554433

>KOG1409|consensus

Probab=99.19  E-value=5.7e-10  Score=89.45  Aligned_cols=87  Identities=24%  Similarity=0.421  Sum_probs=74.9

Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      .+..+.+|.+.+.+++|.|... +|.+|..|..|.+||+.         +.......+.+|...|..+..-+.- +.|+|
T Consensus       189 ~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdig---------g~~g~~~el~gh~~kV~~l~~~~~t-~~l~S  257 (404)
T KOG1409|consen  189 LITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIG---------GRKGTAYELQGHNDKVQALSYAQHT-RQLIS  257 (404)
T ss_pred             eEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEecc---------CCcceeeeeccchhhhhhhhhhhhh-eeeee
Confidence            3566779999999999999885 99999999999999994         4444566889999999999888876 79999


Q ss_pred             eeCCCcEEEEecCCCCCC
Q psy4577         316 ASDDHTICLWDINATPKE  333 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~  333 (384)
                      ++.||.|.+||.+....+
T Consensus       258 ~~edg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  258 CGEDGGIVVWNMNVKRVE  275 (404)
T ss_pred             ccCCCeEEEEeccceeec
Confidence            999999999999877543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.18  E-value=4e-08  Score=84.75  Aligned_cols=70  Identities=17%  Similarity=0.276  Sum_probs=49.9

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .|+||++ ++.+++.||.|.++|+.+              .+++.....-. .-.++++++||++++++.-.++.+.++|
T Consensus        43 ~~s~Dgr-~~yv~~rdg~vsviD~~~--------------~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D  106 (369)
T PF02239_consen   43 KFSPDGR-YLYVANRDGTVSVIDLAT--------------GKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVID  106 (369)
T ss_dssp             E-TT-SS-EEEEEETTSEEEEEETTS--------------SSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred             EecCCCC-EEEEEcCCCeEEEEECCc--------------ccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEec
Confidence            5899998 577778999999999987              35555554433 5678999999997776767889999999


Q ss_pred             cccCCC
Q psy4577          82 VVCVEP   87 (384)
Q Consensus        82 ~~~~~~   87 (384)
                      .++.+.
T Consensus       107 ~~tle~  112 (369)
T PF02239_consen  107 AETLEP  112 (369)
T ss_dssp             TTT--E
T ss_pred             cccccc
Confidence            887643

...

>KOG2315|consensus

Probab=99.18  E-value=9.2e-08  Score=82.00  Aligned_cols=101  Identities=14%  Similarity=0.130  Sum_probs=77.2

Q ss_pred             cCCceEEEEEcCCCCcEEEE-EeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC--
Q psy4577         243 HEGEVNRARYMPQNPCVIAT-KTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD--  319 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D--  319 (384)
                      -.++|.++.|+|++..+.++ |-.-.++-|||++           +.++  +.-..++=+++-|+|.| ++|+-+|.+  
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-----------~~~v--~df~egpRN~~~fnp~g-~ii~lAGFGNL  334 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-----------GKPV--FDFPEGPRNTAFFNPHG-NIILLAGFGNL  334 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-----------CCEe--EeCCCCCccceEECCCC-CEEEEeecCCC
Confidence            47899999999999755544 3456789999985           2344  33355677899999999 788888876  


Q ss_pred             -CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         320 -HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       320 -g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                       |.+-|||+.+.+       .+..+..-...  -++|+|||....+..
T Consensus       335 ~G~mEvwDv~n~K-------~i~~~~a~~tt--~~eW~PdGe~flTAT  373 (566)
T KOG2315|consen  335 PGDMEVWDVPNRK-------LIAKFKAANTT--VFEWSPDGEYFLTAT  373 (566)
T ss_pred             CCceEEEeccchh-------hccccccCCce--EEEEcCCCcEEEEEe
Confidence             899999999977       77777654443  479999999766553

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.18  E-value=6e-09  Score=92.94  Aligned_cols=101  Identities=15%  Similarity=0.175  Sum_probs=64.1

Q ss_pred             eEEEEEcCCCCcEEEEEeCCC--cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC---c
Q psy4577         247 VNRARYMPQNPCVIATKTPSS--DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH---T  321 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg---~  321 (384)
                      .....|+|+++.++++...++  .|+++|+.        .+.   ...+..+...+....|+|+| .+|+.++.++   .
T Consensus       280 ~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~--------~~~---~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~  347 (417)
T TIGR02800       280 DTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD--------GGE---VRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFN  347 (417)
T ss_pred             CCCEEECCCCCEEEEEECCCCCceEEEEECC--------CCC---EEEeecCCCCccCeEECCCC-CEEEEEEccCCceE
Confidence            345678999974444444444  46666653        222   22334445567788999998 6888877776   8


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      |.+||+.++.        ...+... .......|+|++..+...+..
T Consensus       348 i~~~d~~~~~--------~~~l~~~-~~~~~p~~spdg~~l~~~~~~  385 (417)
T TIGR02800       348 IAVMDLDGGG--------ERVLTDT-GLDESPSFAPNGRMILYATTR  385 (417)
T ss_pred             EEEEeCCCCC--------eEEccCC-CCCCCceECCCCCEEEEEEeC
Confidence            8999988753        2222222 223456899999987766553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.17  E-value=4.5e-09  Score=93.71  Aligned_cols=68  Identities=19%  Similarity=0.244  Sum_probs=45.8

Q ss_pred             CCCCCCCceEEEeeCC---CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCC--e
Q psy4577           2 QWSPHNETILASSGTD---RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN--I   76 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~--~   76 (384)
                      +|+|+|+ .||.++.+   ..|++||+.+..            ...   +..+.+.+.+++|+|+|+.++++.+.++  .
T Consensus       196 ~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~------------~~~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~  259 (417)
T TIGR02800       196 AWSPDGQ-KLAYVSFESGKPEIYVQDLATGQ------------REK---VASFPGMNGAPAFSPDGSKLAVSLSKDGNPD  259 (417)
T ss_pred             cCCCCCC-EEEEEEcCCCCcEEEEEECCCCC------------EEE---eecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence            6999998 56665543   479999997521            122   2334456778999999996666666555  4


Q ss_pred             EEEEEcccC
Q psy4577          77 MQILSVVCV   85 (384)
Q Consensus        77 i~vwd~~~~   85 (384)
                      |.+|++.++
T Consensus       260 i~~~d~~~~  268 (417)
T TIGR02800       260 IYVMDLDGK  268 (417)
T ss_pred             EEEEECCCC
Confidence            777777653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=9.1e-09  Score=91.94  Aligned_cols=68  Identities=18%  Similarity=0.324  Sum_probs=43.5

Q ss_pred             CCCCCCCceEEEeeCC---CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCC--e
Q psy4577           2 QWSPHNETILASSGTD---RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN--I   76 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~--~   76 (384)
                      +|||||+. ||..+.+   ..|.+||+.+..            .+.+...   .+.+...+|+|+|+.++++.+.++  .
T Consensus       205 ~wSpDG~~-la~~s~~~~~~~l~~~~l~~g~------------~~~l~~~---~g~~~~~~~SpDG~~la~~~~~~g~~~  268 (430)
T PRK00178        205 RWSPDGKR-IAYVSFEQKRPRIFVQNLDTGR------------REQITNF---EGLNGAPAWSPDGSKLAFVLSKDGNPE  268 (430)
T ss_pred             eECCCCCE-EEEEEcCCCCCEEEEEECCCCC------------EEEccCC---CCCcCCeEECCCCCEEEEEEccCCCce
Confidence            69999985 5554433   368899987521            2222222   234557899999996665666665  5


Q ss_pred             EEEEEcccC
Q psy4577          77 MQILSVVCV   85 (384)
Q Consensus        77 i~vwd~~~~   85 (384)
                      |.+||+.++
T Consensus       269 Iy~~d~~~~  277 (430)
T PRK00178        269 IYVMDLASR  277 (430)
T ss_pred             EEEEECCCC
Confidence            677777664

>KOG2321|consensus

Probab=99.15  E-value=5.6e-09  Score=89.46  Aligned_cols=97  Identities=14%  Similarity=0.198  Sum_probs=71.9

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccce-eeecCCCCceEEEEeCCCC-CCeEEEeeCCCcE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPD-LRLRGHQKEGYGLSWNPSL-NGYLLSASDDHTI  322 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~h~~~i~~~~~s~~~-~~~l~s~s~Dg~i  322 (384)
                      ..|+++.|+.+| -.+++|+.+|.|.|||++.        ..  |+ ..-.+..-+|..+.|.+.+ ...++|.. ...+
T Consensus       229 ~svTal~F~d~g-L~~aVGts~G~v~iyDLRa--------~~--pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~  296 (703)
T KOG2321|consen  229 PSVTALKFRDDG-LHVAVGTSTGSVLIYDLRA--------SK--PLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRIL  296 (703)
T ss_pred             CcceEEEecCCc-eeEEeeccCCcEEEEEccc--------CC--ceeecccCCccceeeecccccCCCceEEecc-hHHh
Confidence            458999999988 5899999999999999973        22  33 2223344589999998763 13566554 3689


Q ss_pred             EEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577         323 CLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK  361 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  361 (384)
                      +|||-.+++       +...+. .+..++++++-|+...
T Consensus       297 kiWd~~~Gk-------~~asiE-pt~~lND~C~~p~sGm  327 (703)
T KOG2321|consen  297 KIWDECTGK-------PMASIE-PTSDLNDFCFVPGSGM  327 (703)
T ss_pred             hhcccccCC-------ceeecc-ccCCcCceeeecCCce
Confidence            999999998       666665 3455999999887764

>KOG2111|consensus

Probab=99.14  E-value=4.1e-08  Score=78.21  Aligned_cols=91  Identities=12%  Similarity=0.043  Sum_probs=72.9

Q ss_pred             EEEE-EeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc-EEEEecCCCCCCCcc
Q psy4577         259 VIAT-KTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT-ICLWDINATPKENRV  336 (384)
Q Consensus       259 ~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~  336 (384)
                      +||. |-.-|.|+|-|+..        ....+...+.+|...|.|++.+-+| .++||+|..|+ |||||..++.     
T Consensus       150 ~LafPg~k~GqvQi~dL~~--------~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~-----  215 (346)
T KOG2111|consen  150 LLAFPGFKTGQVQIVDLAS--------TKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGT-----  215 (346)
T ss_pred             EEEcCCCccceEEEEEhhh--------cCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCc-----
Confidence            4444 34568999999963        2222446788999999999999999 79999999987 6899999998     


Q ss_pred             ccceeeeec--cCCcEeEEEEecCCCccccc
Q psy4577         337 IDAKTIFTG--HTAVVELELIERLTKKADPV  365 (384)
Q Consensus       337 ~~~~~~~~~--h~~~v~~~~~sp~~~~~~~~  365 (384)
                        .++.++-  ....|++++|||+...++..
T Consensus       216 --~l~E~RRG~d~A~iy~iaFSp~~s~Lavs  244 (346)
T KOG2111|consen  216 --LLQELRRGVDRADIYCIAFSPNSSWLAVS  244 (346)
T ss_pred             --EeeeeecCCchheEEEEEeCCCccEEEEE
Confidence              8888863  34569999999999886654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=2.4e-08  Score=88.32  Aligned_cols=96  Identities=11%  Similarity=0.140  Sum_probs=59.6

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCC--CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE-EeeC--
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPS--SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL-SASD--  318 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~-s~s~--  318 (384)
                      ...+....|+|+|+.++.++..+  ..|.+||+.        .+...   .+......+....|+||| ++|+ ++..  
T Consensus       326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~--------~g~~~---~Lt~~~~~~~~p~wSpDG-~~L~f~~~~~g  393 (428)
T PRK01029        326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLA--------TGRDY---QLTTSPENKESPSWAIDS-LHLVYSAGNSN  393 (428)
T ss_pred             CCCccceeECCCCCEEEEEEcCCCCcEEEEEECC--------CCCeE---EccCCCCCccceEECCCC-CEEEEEECCCC
Confidence            34566789999997444444333  368899985        33332   233233356789999998 5665 4333  


Q ss_pred             CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCC
Q psy4577         319 DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLT  359 (384)
Q Consensus       319 Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~  359 (384)
                      ...|++||+.+++       ... +....+.+...+|+|-.
T Consensus       394 ~~~L~~vdl~~g~-------~~~-Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        394 ESELYLISLITKK-------TRK-IVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CceEEEEECCCCC-------EEE-eecCCCcccCceecCCC
Confidence            3578888998775       322 22344557778898854

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.09  E-value=1.6e-09  Score=85.84  Aligned_cols=94  Identities=13%  Similarity=0.146  Sum_probs=62.5

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc------cceeeecCCCCceEEEEeCCCCCCeEEEeeC
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC------HPDLRLRGHQKEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      .-|++..|+|..-+.+.-.+..|.|++-|+|+...-.......      ...--+.+-...|..+.|+++| +++++-+.
T Consensus       222 eVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy  300 (460)
T COG5170         222 EVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY  300 (460)
T ss_pred             HHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc
Confidence            4578899999766677777889999999998432210000000      0011122233578899999998 79988766


Q ss_pred             CCcEEEEecCCCCCCCccccceeeeecc
Q psy4577         319 DHTICLWDINATPKENRVIDAKTIFTGH  346 (384)
Q Consensus       319 Dg~i~iwd~~~~~~~~~~~~~~~~~~~h  346 (384)
                       -+|+|||++..+.      |+.+..-|
T Consensus       301 -ltvkiwDvnm~k~------pikTi~~h  321 (460)
T COG5170         301 -LTVKIWDVNMAKN------PIKTIPMH  321 (460)
T ss_pred             -ceEEEEecccccC------CceeechH
Confidence             5999999998765      66665433

>KOG1064|consensus

Probab=99.09  E-value=1.2e-09  Score=105.13  Aligned_cols=75  Identities=16%  Similarity=0.390  Sum_probs=59.4

Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      .+|.+.++++++.|.-+ +|++|+.+|.|++||+++.          +.++.++.         ++ .. .+|++|+..|
T Consensus      2333 ~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rqr----------ql~h~~~~---------~~-~~-~~f~~~ss~g 2390 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQR----------QLRHTFQA---------LD-TR-EYFVTGSSEG 2390 (2439)
T ss_pred             eecCCCceEEEEcCcce-EEEecCCcCcEEEeehHHH----------HHHHHhhh---------hh-hh-heeeccCccc
Confidence            68999999999999885 9999999999999999731          12222222         44 43 5999999999


Q ss_pred             cEEEEecCCCCCCCccccceeeee
Q psy4577         321 TICLWDINATPKENRVIDAKTIFT  344 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~  344 (384)
                      .|+||++..-.       .+.++.
T Consensus      2391 ~ikIw~~s~~~-------ll~~~p 2407 (2439)
T KOG1064|consen 2391 NIKIWRLSEFG-------LLHTFP 2407 (2439)
T ss_pred             ceEEEEccccc-------hhhcCc
Confidence            99999999876       666665

>KOG4547|consensus

Probab=99.08  E-value=1.2e-08  Score=87.73  Aligned_cols=97  Identities=23%  Similarity=0.133  Sum_probs=84.6

Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      ..|.+.|+++.++.+-. .|-+++.|+.+..|+..          ....+..+.+-...+.+++.+||| ..|++++.  
T Consensus        99 ~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~----------~~~~~~~~~~~~~~~~sl~is~D~-~~l~~as~--  164 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEK----------EKVIIRIWKEQKPLVSSLCISPDG-KILLTASR--  164 (541)
T ss_pred             CCCCCcceeeecccccC-ceEecCCceeEEEEecc----------cceeeeeeccCCCccceEEEcCCC-CEEEeccc--
Confidence            46999999999988774 88999999999999975          233455777777889999999998 79999885  


Q ss_pred             cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecC
Q psy4577         321 TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERL  358 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  358 (384)
                      +|++||+++.+       .+.+|.||.++|+++.|--+
T Consensus       165 ~ik~~~~~~ke-------vv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  165 QIKVLDIETKE-------VVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             eEEEEEccCce-------EEEEecCCCcceEEEEEEEe
Confidence            89999999998       99999999999999999876

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.07  E-value=1.5e-07  Score=79.89  Aligned_cols=106  Identities=21%  Similarity=0.202  Sum_probs=74.9

Q ss_pred             ecCCceEEEEEcCCCCcEEE-EEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC-
Q psy4577         242 NHEGEVNRARYMPQNPCVIA-TKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD-  319 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D-  319 (384)
                      ...++|..++|.|.+..+.+ +|-.+-.+.++|++         +.    ..+....+.=+.+-|+|.+ ++++.++-| 
T Consensus       272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr---------~N----l~~~~Pe~~rNT~~fsp~~-r~il~agF~n  337 (561)
T COG5354         272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR---------GN----LRFYFPEQKRNTIFFSPHE-RYILFAGFDN  337 (561)
T ss_pred             cccccceeeeecccCCceeEEecccccceeecccc---------cc----eEEecCCcccccccccCcc-cEEEEecCCc
Confidence            45789999999998864433 33578889999985         22    2344455556778899998 899998877 


Q ss_pred             --CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccccc
Q psy4577         320 --HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLE  369 (384)
Q Consensus       320 --g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~  369 (384)
                        |.|-+||....-+      .+..+.+-..  +-+.|+||+..........
T Consensus       338 l~gni~i~~~~~rf~------~~~~~~~~n~--s~~~wspd~qF~~~~~ts~  381 (561)
T COG5354         338 LQGNIEIFDPAGRFK------VAGAFNGLNT--SYCDWSPDGQFYDTDTTSE  381 (561)
T ss_pred             cccceEEeccCCceE------EEEEeecCCc--eEeeccCCceEEEecCCCc
Confidence              7999999987652      4445655443  3368999999766554433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.05  E-value=1e-09  Score=61.26  Aligned_cols=38  Identities=21%  Similarity=0.516  Sum_probs=35.3

Q ss_pred             eeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577          43 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus        43 ~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      +++.++.+|.+.|++|+|+|++. +|+|++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            56788899999999999999988 889999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914|consensus

Probab=99.05  E-value=8.4e-09  Score=84.63  Aligned_cols=80  Identities=24%  Similarity=0.282  Sum_probs=66.4

Q ss_pred             EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      ..+|-..+..|+++||++ +++++..|..|||=.+.         +....-.-.-||..-|..++.-++  +.|+|||.|
T Consensus       147 ~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~yp---------a~f~IesfclGH~eFVS~isl~~~--~~LlS~sGD  214 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYP---------ATFVIESFCLGHKEFVSTISLTDN--YLLLSGSGD  214 (390)
T ss_pred             hhhhhhhhheeeecCCCC-EEEEecCCceEEEEecC---------cccchhhhccccHhheeeeeeccC--ceeeecCCC
Confidence            347888999999999996 99999999999997763         222222234579999999999887  479999999


Q ss_pred             CcEEEEecCCCC
Q psy4577         320 HTICLWDINATP  331 (384)
Q Consensus       320 g~i~iwd~~~~~  331 (384)
                      ++|++||+++++
T Consensus       215 ~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  215 KTLRLWDITSGK  226 (390)
T ss_pred             CcEEEEecccCC
Confidence            999999999998

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.04  E-value=5.6e-07  Score=77.70  Aligned_cols=114  Identities=11%  Similarity=0.106  Sum_probs=71.7

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC----C--CCceEEEEeCCCCCCeEEEee
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG----H--QKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----h--~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      ...-+.++|+|+++.++++.-.++.|.++++...      .+....+..+..    .  ......|+++|||..++++..
T Consensus       191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr  264 (345)
T PF10282_consen  191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS------DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR  264 (345)
T ss_dssp             TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT------TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred             CCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc------CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence            4456789999999877788788899999998621      222222222221    1  125788999999944455566


Q ss_pred             CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         318 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      .+++|.++++.....   .+..+..+......-..++++|+|+.+...+
T Consensus       265 ~~~sI~vf~~d~~~g---~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~  310 (345)
T PF10282_consen  265 GSNSISVFDLDPATG---TLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN  310 (345)
T ss_dssp             TTTEEEEEEECTTTT---TEEEEEEEEESSSSEEEEEE-TTSSEEEEEE
T ss_pred             cCCEEEEEEEecCCC---ceEEEEEEeCCCCCccEEEEeCCCCEEEEEe
Confidence            788999999954321   1113333333334478999999999877665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0280|consensus

Probab=99.04  E-value=7.5e-09  Score=81.43  Aligned_cols=118  Identities=16%  Similarity=0.095  Sum_probs=77.2

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      .|...|.+|.-+|..+.++++|+.|-.|++||.|.         ..+|+..-. -.+.|+.+.++|.-...|..+.+-.-
T Consensus       208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn---------m~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G  277 (339)
T KOG0280|consen  208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN---------MGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG  277 (339)
T ss_pred             eeecceEEEecCCCCCceEEEeccccceeeeehhc---------ccCccccCc-cccceEEEEecchhhhHHHHHHHhcC
Confidence            46667888888887778999999999999999973         233432221 23789999999964334444455556


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAK  372 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~  372 (384)
                      .+|-+...+..+  ---.....+.|.+-++.-.|.... ...+.|+..-++
T Consensus       278 ~ki~~~~~~~~e--~~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~  325 (339)
T KOG0280|consen  278 AKILDSSDKVLE--FQIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKK  325 (339)
T ss_pred             ceEEEecccccc--hheeeeccccccceeecccccccc-ceeeeeeccccc
Confidence            788888765422  000233445688888888894442 334557755444

>KOG3881|consensus

Probab=99.02  E-value=5e-08  Score=79.86  Aligned_cols=108  Identities=11%  Similarity=0.092  Sum_probs=89.4

Q ss_pred             eEEEEEcCC-CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         247 VNRARYMPQ-NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       247 v~~v~~~p~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      ++.+.|-+. ..+.||+++.-+.+|+||.+         ....|+..+.--..+|+++...|.+ +++++|..-|.+..+
T Consensus       205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~---------~qRRPV~~fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~F  274 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFATITRYHQVRLYDTR---------HQRRPVAQFDFLENPISSTGLTPSG-NFIYTGNTKGQLAKF  274 (412)
T ss_pred             eccceecCCCCCceEEEEecceeEEEecCc---------ccCcceeEeccccCcceeeeecCCC-cEEEEecccchhhee
Confidence            456667664 13589999999999999996         3445788888888899999999999 799999999999999


Q ss_pred             ecCCCCCCCccccceee-eeccCCcEeEEEEecCCCccccccccccc
Q psy4577         326 DINATPKENRVIDAKTI-FTGHTAVVELELIERLTKKADPVCTLEKA  371 (384)
Q Consensus       326 d~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~~~~~c~~~~~  371 (384)
                      |+++++       .+.. +.+-++.|+++.-||.++.++++...-.+
T Consensus       275 D~r~~k-------l~g~~~kg~tGsirsih~hp~~~~las~GLDRyv  314 (412)
T KOG3881|consen  275 DLRGGK-------LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYV  314 (412)
T ss_pred             cccCce-------eeccccCCccCCcceEEEcCCCceEEeeccceeE
Confidence            999987       4444 88899999999999999998877544433

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.02  E-value=5.2e-07  Score=77.92  Aligned_cols=77  Identities=19%  Similarity=0.284  Sum_probs=54.3

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee-CCCcEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS-DDHTICL  324 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s-~Dg~i~i  324 (384)
                      ....|+++|+++.++++....+.|.+|++...      .+....+..+......-..++++|+| ++|+.+. .++.|.+
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~------~g~l~~~~~~~~~G~~Pr~~~~s~~g-~~l~Va~~~s~~v~v  318 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA------TGTLTLVQTVPTGGKFPRHFAFSPDG-RYLYVANQDSNTVSV  318 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT------TTTEEEEEEEEESSSSEEEEEE-TTS-SEEEEEETTTTEEEE
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecC------CCceEEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCeEEE
Confidence            46789999999877777777889999999421      34444444444334457899999999 5666655 6789999


Q ss_pred             EecCC
Q psy4577         325 WDINA  329 (384)
Q Consensus       325 wd~~~  329 (384)
                      |++..
T Consensus       319 f~~d~  323 (345)
T PF10282_consen  319 FDIDP  323 (345)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            98853

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.02  E-value=9.2e-10  Score=61.47  Aligned_cols=37  Identities=35%  Similarity=0.636  Sum_probs=34.8

Q ss_pred             ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEe
Q psy4577         289 PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWD  326 (384)
Q Consensus       289 ~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd  326 (384)
                      ++.++.+|.++|++|+|+|++ .+|+||+.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            567899999999999999998 7999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=6.3e-08  Score=85.69  Aligned_cols=103  Identities=11%  Similarity=0.090  Sum_probs=65.3

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC---CcE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD---HTI  322 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D---g~i  322 (384)
                      .....+|+|+|+.++.+...+|...||.+..       .........+..+...+....||||| +.|+..+.+   ..|
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~-------~~~g~~~~~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I  353 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI-------DPEGQSPRLLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQI  353 (428)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEEC-------cccccceEEeccCCCCccceeECCCC-CEEEEEEcCCCCcEE
Confidence            3456799999974555555577666665531       11111122344455567789999999 677665543   479


Q ss_pred             EEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccc
Q psy4577         323 CLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADP  364 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  364 (384)
                      ++||+.+++       . ..+......+....|+|||+.+.-
T Consensus       354 ~v~dl~~g~-------~-~~Lt~~~~~~~~p~wSpDG~~L~f  387 (428)
T PRK01029        354 CVYDLATGR-------D-YQLTTSPENKESPSWAIDSLHLVY  387 (428)
T ss_pred             EEEECCCCC-------e-EEccCCCCCccceEECCCCCEEEE
Confidence            999998875       3 223323345678999999987653

>KOG4532|consensus

Probab=99.00  E-value=1.8e-07  Score=72.95  Aligned_cols=113  Identities=6%  Similarity=-0.042  Sum_probs=70.4

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC--eEEEeeCCCc
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG--YLLSASDDHT  321 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~--~l~s~s~Dg~  321 (384)
                      ++.-.+..|+.... .+|++..||++.|||+|.....     ......+-..|.+.+..+.|++-|+.  +|+|- .=+.
T Consensus       203 ~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tp-----m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE-hfs~  275 (344)
T KOG4532|consen  203 SDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATP-----MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE-HFSR  275 (344)
T ss_pred             CCCceeeeeccCcc-eEEEEecCCcEEEEEecccccc-----hhhhcccCCCCCCceEEEEecCCCcceEEEEec-Ccce
Confidence            33446788888885 9999999999999999842210     00011122348899999999986543  33333 3478


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCC-cEeEEEEecCCCccc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTA-VVELELIERLTKKAD  363 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~  363 (384)
                      +.+-|++++...+-...+-..+..|.. .|....|+.++....
T Consensus       276 ~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~  318 (344)
T KOG4532|consen  276 VHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND  318 (344)
T ss_pred             EEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence            999999998632111111111223433 377788887776443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=1.4e-07  Score=84.33  Aligned_cols=100  Identities=9%  Similarity=0.011  Sum_probs=58.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCc--EEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC-C--
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSD--VLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD-H--  320 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D-g--  320 (384)
                      ......|+|+++.++.+...+|.  |+++++.        .+....+ .+.+  ......+|+|+| ++|+..+.+ +  
T Consensus       288 ~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~--------~g~~~~l-t~~~--~~~~~~~~Spdg-~~i~~~~~~~~~~  355 (430)
T PRK00178        288 IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN--------GGRAERV-TFVG--NYNARPRLSADG-KTLVMVHRQDGNF  355 (430)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECC--------CCCEEEe-ecCC--CCccceEECCCC-CEEEEEEccCCce
Confidence            34567899999755555544544  6666654        3332222 2222  233467899998 677666543 3  


Q ss_pred             cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         321 TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      .|.+||+.+++       . ..+.. ........|+|+|..+.-..
T Consensus       356 ~l~~~dl~tg~-------~-~~lt~-~~~~~~p~~spdg~~i~~~~  392 (430)
T PRK00178        356 HVAAQDLQRGS-------V-RILTD-TSLDESPSVAPNGTMLIYAT  392 (430)
T ss_pred             EEEEEECCCCC-------E-EEccC-CCCCCCceECCCCCEEEEEE
Confidence            58889988764       2 22221 11223468999998776544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=1.5e-07  Score=83.93  Aligned_cols=101  Identities=12%  Similarity=0.139  Sum_probs=56.3

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEE--EecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC-CC-
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLV--FDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD-DH-  320 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~-Dg-  320 (384)
                      ......+|+|+++.++.+...++...|  +|+.        .+....+ ++.++  .....+|+||| ++|+..+. ++ 
T Consensus       306 ~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~--------~g~~~~L-t~~g~--~~~~~~~SpDG-~~l~~~~~~~g~  373 (448)
T PRK04792        306 AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA--------SGKVSRL-TFEGE--QNLGGSITPDG-RSMIMVNRTNGK  373 (448)
T ss_pred             CCccceEECCCCCEEEEEECCCCCceEEEEECC--------CCCEEEE-ecCCC--CCcCeeECCCC-CEEEEEEecCCc
Confidence            345667899999755555555555444  4553        2332221 23332  23457999999 56665554 44 


Q ss_pred             -cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         321 -TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       321 -~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                       .|.++|+.+++       . ..+... .......|+|+|+.+.-..
T Consensus       374 ~~I~~~dl~~g~-------~-~~lt~~-~~d~~ps~spdG~~I~~~~  411 (448)
T PRK04792        374 FNIARQDLETGA-------M-QVLTST-RLDESPSVAPNGTMVIYST  411 (448)
T ss_pred             eEEEEEECCCCC-------e-EEccCC-CCCCCceECCCCCEEEEEE
Confidence             45556776664       2 222211 1122457999999766544

>KOG2314|consensus

Probab=98.93  E-value=2.1e-07  Score=79.81  Aligned_cols=111  Identities=10%  Similarity=0.058  Sum_probs=71.0

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCC--CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee--
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPS--SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS--  317 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s--  317 (384)
                      .-...|...+|-|.|..+.+..+.+  .++.+|-....      ......+..+..  ...+.+-|+|.| ++++.+.  
T Consensus       443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~------~~~~~lVk~~dk--~~~N~vfwsPkG-~fvvva~l~  513 (698)
T KOG2314|consen  443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN------IKKPSLVKELDK--KFANTVFWSPKG-RFVVVAALV  513 (698)
T ss_pred             ecchheeeeeeccCCCeEEEEEccccccceeEEEeecC------CCchhhhhhhcc--cccceEEEcCCC-cEEEEEEec
Confidence            3467889999999996444333332  56888887531      122223333432  467899999999 7776654  


Q ss_pred             -CCCcEEEEecCCCCCCCccccceeeee-ccCCcEeEEEEecCCCccccccccc
Q psy4577         318 -DDHTICLWDINATPKENRVIDAKTIFT-GHTAVVELELIERLTKKADPVCTLE  369 (384)
Q Consensus       318 -~Dg~i~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~c~~~  369 (384)
                       ..|.+..+|..-..       ...+-. .| ...+.+.|-|.|+...++.++.
T Consensus       514 s~~g~l~F~D~~~a~-------~k~~~~~eh-~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  514 SRRGDLEFYDTDYAD-------LKDTASPEH-FAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             ccccceEEEecchhh-------hhhccCccc-cccccceECCCCCEEEEeeehh
Confidence             46899999998533       222211 23 3478899999999866554433

>KOG1354|consensus

Probab=98.92  E-value=1.4e-08  Score=81.72  Aligned_cols=244  Identities=12%  Similarity=0.107  Sum_probs=135.6

Q ss_pred             ccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec
Q psy4577          52 TAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP  131 (384)
Q Consensus        52 ~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  131 (384)
                      .+-|.++.|...|. +||+|..+|.|-++.-.....    . +...   ...+..+.+- +.-+..-..+..|..+.|.+
T Consensus        25 adiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~----~-ey~~---~t~fqshepE-FDYLkSleieEKinkIrw~~   94 (433)
T KOG1354|consen   25 ADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK----G-EYNF---QTEFQSHEPE-FDYLKSLEIEEKINKIRWLD   94 (433)
T ss_pred             hcceeeEEeecccc-eEeecCCCCeEEEeecccccc----c-ceee---eeeeeccCcc-cchhhhhhhhhhhhhceecC
Confidence            45789999999999 889999999999986543210    0 0000   0001111110 00111111255788999999


Q ss_pred             Cceee---e---cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEee
Q psy4577         132 DVTRV---I---NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQ  205 (384)
Q Consensus       132 ~~~~~---~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  205 (384)
                      ++...   +   |.++++|.+.......  .+.....         ..                       ....+.++.
T Consensus        95 ~~n~a~FLlstNdktiKlWKi~er~~k~--~~~~~~~---------~~-----------------------~~~~~~~lr  140 (433)
T KOG1354|consen   95 DGNLAEFLLSTNDKTIKLWKIRERGSKK--EGYNLPE---------EG-----------------------PPGTITSLR  140 (433)
T ss_pred             CCCccEEEEecCCcceeeeeeecccccc--ccccccc---------cC-----------------------CCCccceee
Confidence            88532   2   9999999986543311  0000000         00                       000111111


Q ss_pred             cCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCC
Q psy4577         206 LPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNG  285 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  285 (384)
                      ++...      ..|...         ...+......+|..-|+++.++.|.+ .+++ .+|-.|.+|++..       ..
T Consensus       141 ~p~~~------~~~~~v---------ea~prRv~aNaHtyhiNSIS~NsD~E-t~lS-ADdLRINLWnlei-------~d  196 (433)
T KOG1354|consen  141 LPVEG------RHDLEV---------EASPRRVYANAHTYHINSISVNSDKE-TFLS-ADDLRINLWNLEI-------ID  196 (433)
T ss_pred             ceeec------ccccee---------eeeeeeeccccceeEeeeeeecCccc-eEee-ccceeeeeccccc-------cC
Confidence            11000      000000         00111223347888999999999996 7777 4588999999864       22


Q ss_pred             CccceeeecCCC-----CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCC-------Cccccc--eeeeeccCCcEe
Q psy4577         286 ECHPDLRLRGHQ-----KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKE-------NRVIDA--KTIFTGHTAVVE  351 (384)
Q Consensus       286 ~~~~~~~~~~h~-----~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~-------~~~~~~--~~~~~~h~~~v~  351 (384)
                      ..-.+.-++.+.     .-|++..|+|..-.+|+=.+..|+|++-|++.....       ....++  ..-+.+--+.|.
T Consensus       197 ~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSIS  276 (433)
T KOG1354|consen  197 QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSIS  276 (433)
T ss_pred             CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhh
Confidence            222333444443     368999999975468888888999999999954210       000011  111122335799


Q ss_pred             EEEEecCCCccc
Q psy4577         352 LELIERLTKKAD  363 (384)
Q Consensus       352 ~~~~sp~~~~~~  363 (384)
                      ++.|++.|+.+.
T Consensus       277 DvKFs~sGryil  288 (433)
T KOG1354|consen  277 DVKFSHSGRYIL  288 (433)
T ss_pred             ceEEccCCcEEE
Confidence            999999998654

>KOG4547|consensus

Probab=98.90  E-value=3.4e-07  Score=79.07  Aligned_cols=75  Identities=19%  Similarity=0.253  Sum_probs=60.6

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCC-----CCCeEEEe
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPS-----LNGYLLSA  316 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~-----~~~~l~s~  316 (384)
                      +.+..+.+++.+|+++ ++++|+  +.|++||++          ..+.+..|.||.++|++++|--+     |..+|.+.
T Consensus       142 ~~~~~~~sl~is~D~~-~l~~as--~~ik~~~~~----------~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa  208 (541)
T KOG4547|consen  142 EQKPLVSSLCISPDGK-ILLTAS--RQIKVLDIE----------TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA  208 (541)
T ss_pred             cCCCccceEEEcCCCC-EEEecc--ceEEEEEcc----------CceEEEEecCCCcceEEEEEEEeccccccceeeecc
Confidence            4455688999999996 888876  689999996          23467799999999999999876     54567777


Q ss_pred             eCCCcEEEEecCC
Q psy4577         317 SDDHTICLWDINA  329 (384)
Q Consensus       317 s~Dg~i~iwd~~~  329 (384)
                      ..+.-+.+|-+..
T Consensus       209 ~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  209 AAERGITVWVVEK  221 (541)
T ss_pred             ccccceeEEEEEc
Confidence            7788899998876

>KOG0309|consensus

Probab=98.87  E-value=1.5e-08  Score=89.54  Aligned_cols=75  Identities=25%  Similarity=0.511  Sum_probs=59.8

Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEec
Q psy4577         248 NRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI  327 (384)
Q Consensus       248 ~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~  327 (384)
                      ..|.|+-..++.+|+ +....|++||++.        + ..|+..+++|...|+.++|+.-....+.+++.|++|+.||.
T Consensus       162 sqVkwnyk~p~vlas-shg~~i~vwd~r~--------g-s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y  231 (1081)
T KOG0309|consen  162 SQVKWNYKDPNVLAS-SHGNDIFVWDLRK--------G-STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDY  231 (1081)
T ss_pred             ceeeecccCcchhhh-ccCCceEEEeccC--------C-CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence            456676666667776 6678899999973        2 34788999999999999998765468999999999999999


Q ss_pred             CCCCC
Q psy4577         328 NATPK  332 (384)
Q Consensus       328 ~~~~~  332 (384)
                      ....+
T Consensus       232 ~kSt~  236 (1081)
T KOG0309|consen  232 SKSTT  236 (1081)
T ss_pred             ccccc
Confidence            87654

>KOG0974|consensus

Probab=98.85  E-value=1.9e-07  Score=85.84  Aligned_cols=105  Identities=14%  Similarity=0.175  Sum_probs=83.0

Q ss_pred             EEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC
Q psy4577         239 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       239 ~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      .+.+|++.|.++.++.+|. ++++.|+|.++|+|++..        ... .....-||.+.|..+.|+|+   .++|++.
T Consensus       170 ~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s--------~~~-~~~~~fgHsaRvw~~~~~~n---~i~t~ge  236 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDS--------REV-LGCTGFGHSARVWACCFLPN---RIITVGE  236 (967)
T ss_pred             eecccCCceEEEEEccCCc-EEEEEecCcceeeeeccc--------ccc-cCcccccccceeEEEEeccc---eeEEecc
Confidence            3458999999999999995 999999999999999963        222 22356789999999999987   7999999


Q ss_pred             CCcEEEEecCCCCCCCccccceeeeeccCC-cEeEEEEecCCCcccc
Q psy4577         319 DHTICLWDINATPKENRVIDAKTIFTGHTA-VVELELIERLTKKADP  364 (384)
Q Consensus       319 Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~  364 (384)
                      |.+.++|+....        .+.++.+|.+ .|..++.++......+
T Consensus       237 dctcrvW~~~~~--------~l~~y~~h~g~~iw~~~~~~~~~~~vT  275 (967)
T KOG0974|consen  237 DCTCRVWGVNGT--------QLEVYDEHSGKGIWKIAVPIGVIIKVT  275 (967)
T ss_pred             ceEEEEEecccc--------eehhhhhhhhcceeEEEEcCCceEEEe
Confidence            999999977654        4446777764 5788887776654443

>KOG1409|consensus

Probab=98.84  E-value=2.4e-07  Score=74.77  Aligned_cols=124  Identities=13%  Similarity=0.169  Sum_probs=78.9

Q ss_pred             EEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q psy4577         201 IASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK  280 (384)
Q Consensus       201 i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~  280 (384)
                      +..+.+.+.++.+.....|.....|+..+   .+.......+|.+.|..+..-+.-+ .+.+++.||.|-+|+++....+
T Consensus       200 ~~~l~Wd~~~~~LfSg~~d~~vi~wdigg---~~g~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  200 VTCLKWDPGQRLLFSGASDHSVIMWDIGG---RKGTAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNVKRVE  275 (404)
T ss_pred             eEEEEEcCCCcEEEeccccCceEEEeccC---Ccceeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccceeec
Confidence            44445555555544444444443332211   2334556778999999998888774 8889999999999999743322


Q ss_pred             C-----------------------------------------------CC-------------------------CCCcc
Q psy4577         281 P-----------------------------------------------DP-------------------------NGECH  288 (384)
Q Consensus       281 ~-----------------------------------------------~~-------------------------~~~~~  288 (384)
                      .                                               +.                         .....
T Consensus       276 tpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t  355 (404)
T KOG1409|consen  276 TPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERT  355 (404)
T ss_pred             CccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCC
Confidence            1                                               00                         00111


Q ss_pred             ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCC
Q psy4577         289 PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINA  329 (384)
Q Consensus       289 ~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~  329 (384)
                      |+..+..-...|+.+.+..+. .+|+|+|.|..|+|||++.
T Consensus       356 ~LA~phei~tgItamhlqetl-glLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  356 PLAIPHEIKTGITAMHLQETL-GLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             ccccccccccceeEEEhhhhc-cceeecCCceEEEEEechh
Confidence            222222223368889888887 7999999999999999975

>KOG2315|consensus

Probab=98.84  E-value=8.1e-07  Score=76.38  Aligned_cols=94  Identities=18%  Similarity=0.269  Sum_probs=63.3

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC--
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPS---SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD--  318 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~--  318 (384)
                      +++=+++-|+|.|. +++.++-+   |.|-|||..         . .+.+..+..  ..-+-..|+||| .+|+|+..  
T Consensus       311 egpRN~~~fnp~g~-ii~lAGFGNL~G~mEvwDv~---------n-~K~i~~~~a--~~tt~~eW~PdG-e~flTATTaP  376 (566)
T KOG2315|consen  311 EGPRNTAFFNPHGN-IILLAGFGNLPGDMEVWDVP---------N-RKLIAKFKA--ANTTVFEWSPDG-EYFLTATTAP  376 (566)
T ss_pred             CCCccceEECCCCC-EEEEeecCCCCCceEEEecc---------c-hhhcccccc--CCceEEEEcCCC-cEEEEEeccc
Confidence            56678899999995 66666643   889999985         2 233434433  245678999999 58877764  


Q ss_pred             ----CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577         319 ----DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK  360 (384)
Q Consensus       319 ----Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  360 (384)
                          |+.++||+.....        +..-. ..+..+.+.|-|...
T Consensus       377 RlrvdNg~KiwhytG~~--------l~~~~-f~sEL~qv~W~P~~~  413 (566)
T KOG2315|consen  377 RLRVDNGIKIWHYTGSL--------LHEKM-FKSELLQVEWRPFND  413 (566)
T ss_pred             cEEecCCeEEEEecCce--------eehhh-hhHhHhheeeeecCC
Confidence                6899999997653        22211 112577788876543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.84  E-value=1e-06  Score=86.28  Aligned_cols=75  Identities=11%  Similarity=0.109  Sum_probs=55.1

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceee-----------ecCCCCceEEEEeCCCCCCeEEE
Q psy4577         247 VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLR-----------LRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----------~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      ..+++++++|. ++++-+.++.|++||..        .+....+..           ..+.-.....|+++++| +++++
T Consensus       806 P~Gvavd~dG~-LYVADs~N~rIrviD~~--------tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVa  875 (1057)
T PLN02919        806 PLGVLCAKDGQ-IYVADSYNHKIKKLDPA--------TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVA  875 (1057)
T ss_pred             CceeeEeCCCc-EEEEECCCCEEEEEECC--------CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEE
Confidence            35789999995 88888999999999985        221111100           11112356789999999 79999


Q ss_pred             eeCCCcEEEEecCCCC
Q psy4577         316 ASDDHTICLWDINATP  331 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~  331 (384)
                      -+.+++|++||+++++
T Consensus       876 Dt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        876 DTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             ECCCCEEEEEECCCCc
Confidence            9999999999998865

>KOG4714|consensus

Probab=98.81  E-value=3.2e-08  Score=76.66  Aligned_cols=75  Identities=20%  Similarity=0.323  Sum_probs=66.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      .|.+++-+|.-++++++|+.||.+-+||.+.         ...|...+..|+.+|+.+-|+|..+..|+++++||.+..|
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn---------~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w  251 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARN---------VAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW  251 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEccc---------ccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence            3889999998878999999999999999972         2446667889999999999999877899999999999999


Q ss_pred             ecCC
Q psy4577         326 DINA  329 (384)
Q Consensus       326 d~~~  329 (384)
                      |..+
T Consensus       252 das~  255 (319)
T KOG4714|consen  252 DAST  255 (319)
T ss_pred             cCCC
Confidence            9885

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.72  E-value=7.7e-06  Score=80.29  Aligned_cols=103  Identities=12%  Similarity=0.077  Sum_probs=68.8

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccce-----------eeecCC--------CCceEEEEeC
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPD-----------LRLRGH--------QKEGYGLSWN  306 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-----------~~~~~h--------~~~i~~~~~s  306 (384)
                      ....|+++|++..++++-+.++.|++||+..        +....+           ..+..+        -..-.+++++
T Consensus       741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~t--------g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd  812 (1057)
T PLN02919        741 QPSGISLSPDLKELYIADSESSSIRALDLKT--------GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA  812 (1057)
T ss_pred             CccEEEEeCCCCEEEEEECCCCeEEEEECCC--------CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe
Confidence            3578999999876788888889999999862        211000           001000        1123589999


Q ss_pred             CCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec--------------cCCcEeEEEEecCCCccccc
Q psy4577         307 PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG--------------HTAVVELELIERLTKKADPV  365 (384)
Q Consensus       307 ~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--------------h~~~v~~~~~sp~~~~~~~~  365 (384)
                      ++| .++++-+.+++|++||..++.       .. ++.+              .-.....++++++|....+.
T Consensus       813 ~dG-~LYVADs~N~rIrviD~~tg~-------v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD  876 (1057)
T PLN02919        813 KDG-QIYVADSYNHKIKKLDPATKR-------VT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD  876 (1057)
T ss_pred             CCC-cEEEEECCCCEEEEEECCCCe-------EE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence            998 689999999999999998764       22 2221              12346788999999754443

>KOG2695|consensus

Probab=98.71  E-value=1.2e-07  Score=76.57  Aligned_cols=99  Identities=11%  Similarity=0.171  Sum_probs=66.8

Q ss_pred             ecCCceEEEEEcC-CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEE--EeCCCCCCeEEEeeC
Q psy4577         242 NHEGEVNRARYMP-QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGL--SWNPSLNGYLLSASD  318 (384)
Q Consensus       242 ~~~~~v~~v~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~--~~s~~~~~~l~s~s~  318 (384)
                      .|...|+++..-. +++ +|.+.+.+|+|.+||+|..       ...+.+.+..||...-.-+  -..+.. +.+++++.
T Consensus       296 yh~Ssvtslq~Lq~s~q-~LmaS~M~gkikLyD~R~~-------K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~Gd  366 (425)
T KOG2695|consen  296 YHDSSVTSLQILQFSQQ-KLMASDMTGKIKLYDLRAT-------KCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGD  366 (425)
T ss_pred             EcCcchhhhhhhccccc-eEeeccCcCceeEeeehhh-------hcccceeeeeccccccccccccccccc-ceEEEccC
Confidence            5666777776655 454 6667789999999999842       2223466788886533333  334554 68999999


Q ss_pred             CCcEEEEecCCCCCCCccccceeeeeccCC----cEeEEEEe
Q psy4577         319 DHTICLWDINATPKENRVIDAKTIFTGHTA----VVELELIE  356 (384)
Q Consensus       319 Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~s  356 (384)
                      |...+||.++.+.       .+.++.....    .+..++|.
T Consensus       367 DcytRiWsl~~gh-------Ll~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  367 DCYTRIWSLDSGH-------LLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             eeEEEEEecccCc-------eeeccCCCCccccccccceehh
Confidence            9999999999987       6666654322    34455553

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.68  E-value=4.3e-05  Score=64.88  Aligned_cols=80  Identities=15%  Similarity=0.160  Sum_probs=54.6

Q ss_pred             CceEEEEEcCCCCcEEEEEe---------CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC-eEE
Q psy4577         245 GEVNRARYMPQNPCVIATKT---------PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG-YLL  314 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~-~l~  314 (384)
                      +.+..++++|+++++++...         ..+.|.++|..        +..  .+..+.- ...+..++++||+ + +|+
T Consensus       248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~--------t~k--vi~~i~v-G~~~~~iavS~Dg-kp~ly  315 (352)
T TIGR02658       248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK--------TGK--RLRKIEL-GHEIDSINVSQDA-KPLLY  315 (352)
T ss_pred             CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC--------CCe--EEEEEeC-CCceeeEEECCCC-CeEEE
Confidence            44455999999976666432         12478999975        332  2333331 2468999999998 5 555


Q ss_pred             Eee-CCCcEEEEecCCCCCCCccccceeee
Q psy4577         315 SAS-DDHTICLWDINATPKENRVIDAKTIF  343 (384)
Q Consensus       315 s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~  343 (384)
                      +.. .++.|.+.|..+++       .+.++
T Consensus       316 vtn~~s~~VsViD~~t~k-------~i~~i  338 (352)
T TIGR02658       316 ALSTGDKTLYIFDAETGK-------ELSSV  338 (352)
T ss_pred             EeCCCCCcEEEEECcCCe-------EEeee
Confidence            444 68999999999987       66665

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.67  E-value=1.2e-05  Score=77.50  Aligned_cols=259  Identities=13%  Similarity=0.195  Sum_probs=133.1

Q ss_pred             CCCCCCceEEEeeCCCeEEEe----ecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577           3 WSPHNETILASSGTDRRLHVW----DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ   78 (384)
Q Consensus         3 fsp~~~~~lat~~~d~~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~   78 (384)
                      |-++.. -|+.+..+|.|.+.    +...            ...+.+...   ...|.+++||||+. +|+-+..++++.
T Consensus        83 yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~------------~~~E~VG~v---d~GI~a~~WSPD~E-lla~vT~~~~l~  145 (928)
T PF04762_consen   83 YLADSE-SLCIALASGDIILVREDPDPDE------------DEIEIVGSV---DSGILAASWSPDEE-LLALVTGEGNLL  145 (928)
T ss_pred             eccCCC-cEEEEECCceEEEEEccCCCCC------------ceeEEEEEE---cCcEEEEEECCCcC-EEEEEeCCCEEE
Confidence            445555 37777788989888    4332            123444433   45899999999999 888888888888


Q ss_pred             EEEcccCCCccchhh---eeeeeeeEE-EeccC-----------------Ccccccceeee-eeccCeeEEEEecCceee
Q psy4577          79 ILSVVCVEPFDDAVE---ERVINEEYK-IWKKN-----------------TPFLYDLVMTH-ALEWPSLTAQWLPDVTRV  136 (384)
Q Consensus        79 vwd~~~~~~~~~~~~---~~~~~~~~~-~~~~~-----------------~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~  136 (384)
                      +..-.- +.+.....   +......+. =|...                 .+.+...-.+. ...+.-..++|..||.++
T Consensus       146 ~mt~~f-d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yF  224 (928)
T PF04762_consen  146 LMTRDF-DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYF  224 (928)
T ss_pred             EEeccc-eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEE
Confidence            764211 10000000   000000000 01100                 00000000000 023455689999999988


Q ss_pred             e--------c--ceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeec
Q psy4577         137 I--------N--EEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQL  206 (384)
Q Consensus       137 ~--------d--~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  206 (384)
                      +        .  ..+|+|+..+.......   ....-.-.+.|.|.+.           +..+++..  .+.        
T Consensus       225 AVss~~~~~~~~R~iRVy~ReG~L~stSE---~v~gLe~~l~WrPsG~-----------lIA~~q~~--~~~--------  280 (928)
T PF04762_consen  225 AVSSVEPETGSRRVIRVYSREGELQSTSE---PVDGLEGALSWRPSGN-----------LIASSQRL--PDR--------  280 (928)
T ss_pred             EEEEEEcCCCceeEEEEECCCceEEeccc---cCCCccCCccCCCCCC-----------EEEEEEEc--CCC--------
Confidence            7        2  56788888643221111   1111112355655543           11111110  000        


Q ss_pred             CCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q psy4577         207 PNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGE  286 (384)
Q Consensus       207 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  286 (384)
                            ..+.-|+.+       |...+.+.+.. ......|..+.|++++. +||..-.|. |.+|-..        ...
T Consensus       281 ------~~VvFfErN-------GLrhgeF~l~~-~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~--------NYH  336 (928)
T PF04762_consen  281 ------HDVVFFERN-------GLRHGEFTLRF-DPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRS--------NYH  336 (928)
T ss_pred             ------cEEEEEecC-------CcEeeeEecCC-CCCCceeeEEEECCCCC-EEEEEecCC-ceEEEee--------CCE
Confidence                  111111111       11122222211 23456789999999995 898877655 9999875        344


Q ss_pred             ccceeeecCCC-CceEEEEeCCCCCCeEEEeeCCCcEEEEec
Q psy4577         287 CHPDLRLRGHQ-KEGYGLSWNPSLNGYLLSASDDHTICLWDI  327 (384)
Q Consensus       287 ~~~~~~~~~h~-~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~  327 (384)
                      ....+.+.... ..+..+.|+|..+..|.....+|.+..+++
T Consensus       337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            44444444332 345569999987777888777777765543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.65  E-value=4.7e-05  Score=73.56  Aligned_cols=276  Identities=16%  Similarity=0.212  Sum_probs=137.2

Q ss_pred             CCCCCCCCceEEEeeC---C---CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEec-
Q psy4577           1 VQWSPHNETILASSGT---D---RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE-   73 (384)
Q Consensus         1 v~fsp~~~~~lat~~~---d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~-   73 (384)
                      |+|-.||. ++|+.+.   +   +.||||+.+.               .+..+-..-.+--.+++|.|.|. +||+... 
T Consensus       215 ISWRGDG~-yFAVss~~~~~~~~R~iRVy~ReG---------------~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~  277 (928)
T PF04762_consen  215 ISWRGDGE-YFAVSSVEPETGSRRVIRVYSREG---------------ELQSTSEPVDGLEGALSWRPSGN-LIASSQRL  277 (928)
T ss_pred             EEECCCCc-EEEEEEEEcCCCceeEEEEECCCc---------------eEEeccccCCCccCCccCCCCCC-EEEEEEEc
Confidence            46888997 7888765   2   5799999863               33333332233345789999999 8877653 


Q ss_pred             --CCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeecccc
Q psy4577          74 --DNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNT  148 (384)
Q Consensus        74 --D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~  148 (384)
                        ...|.+|.-++-                    .++.+....   ...+..|..++|++++..++   ...|++|...+
T Consensus       278 ~~~~~VvFfErNGL--------------------rhgeF~l~~---~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~N  334 (928)
T PF04762_consen  278 PDRHDVVFFERNGL--------------------RHGEFTLRF---DPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSN  334 (928)
T ss_pred             CCCcEEEEEecCCc--------------------EeeeEecCC---CCCCceeeEEEECCCCCEEEEEecCCceEEEeeC
Confidence              234444443321                    011111000   01244678999999999887   55699998866


Q ss_pred             ccccceeecccccc----cceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCC---CcccccccccCc
Q psy4577         149 PFLYDLVMTHALEW----PSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNE---DAQFDASNYDTD  221 (384)
Q Consensus       149 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~d~~  221 (384)
                         |+.........    ....+.|.|...         ..+.+.+..+.-...-..+.+..++.   .....+..-|+.
T Consensus       335 ---YHWYLKqei~~~~~~~~~~~~Wdpe~p---------~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~  402 (928)
T PF04762_consen  335 ---YHWYLKQEIRFSSSESVNFVKWDPEKP---------LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGN  402 (928)
T ss_pred             ---CEEEEEEEEEccCCCCCCceEECCCCC---------CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCC
Confidence               44333332221    122366766543         11222221110000001111111100   001111112221


Q ss_pred             CCCCCCccCCC-CceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC--CCCCCc-cce-----ee
Q psy4577         222 KGDFGGFGSVS-GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP--DPNGEC-HPD-----LR  292 (384)
Q Consensus       222 ~~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~-~~~-----~~  292 (384)
                      .-..-.+.... ..+-..........|..++|++++. .+|+-..||.|.+|.........  .+.... ...     ..
T Consensus       403 ~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~-~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (928)
T PF04762_consen  403 KLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS-RFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISD  481 (928)
T ss_pred             eEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC-eEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccc
Confidence            11100000000 0111112334568899999999985 57888889999999864322110  000000 000     00


Q ss_pred             ecCCCCceEEEEeCCCCCCeEEEeeCC---CcEEEEecCCC
Q psy4577         293 LRGHQKEGYGLSWNPSLNGYLLSASDD---HTICLWDINAT  330 (384)
Q Consensus       293 ~~~h~~~i~~~~~s~~~~~~l~s~s~D---g~i~iwd~~~~  330 (384)
                      ...-...+..++|..+. .+++..+.+   ..+.++++...
T Consensus       482 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~  521 (928)
T PF04762_consen  482 SELPLGSLRQLAWLNDD-TLLVLSDSDSNQSKIVLVDIDDS  521 (928)
T ss_pred             cccccccEEEEEEeCCC-EEEEEEecCcccceEEEEEeccC
Confidence            11123457888888876 555555554   68888888433

>KOG2314|consensus

Probab=98.63  E-value=3.2e-06  Score=72.81  Aligned_cols=99  Identities=11%  Similarity=0.145  Sum_probs=60.6

Q ss_pred             CceEEEEEcCCCCcEEEEE---eCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC--
Q psy4577         245 GEVNRARYMPQNPCVIATK---TPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD--  319 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D--  319 (384)
                      ...+.+.|+|.|+ +++.+   |..|.+.++|+.-        ...+.+ ....|. ..+.+-|.|.| +|++|++.-  
T Consensus       493 ~~~N~vfwsPkG~-fvvva~l~s~~g~l~F~D~~~--------a~~k~~-~~~eh~-~at~veWDPtG-RYvvT~ss~wr  560 (698)
T KOG2314|consen  493 KFANTVFWSPKGR-FVVVAALVSRRGDLEFYDTDY--------ADLKDT-ASPEHF-AATEVEWDPTG-RYVVTSSSSWR  560 (698)
T ss_pred             cccceEEEcCCCc-EEEEEEecccccceEEEecch--------hhhhhc-cCcccc-ccccceECCCC-CEEEEeeehhh
Confidence            4568899999996 66554   4578999999841        112111 222233 46789999999 899998864  


Q ss_pred             ----CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         320 ----HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       320 ----g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                          .--+||+++..-       ....   --+..-...|.|.-+.+.+-
T Consensus       561 hk~d~GYri~tfqGrl-------l~~~---~i~~f~qF~WRPRPps~LS~  600 (698)
T KOG2314|consen  561 HKVDNGYRIFTFQGRL-------LKED---IIDRFKQFLWRPRPPSLLSE  600 (698)
T ss_pred             hccccceEEEEeecHH-------HHHH---HHHHHHhhccCCCCCcccCH
Confidence                345666665542       1000   01223346677777666554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.63  E-value=2e-05  Score=62.67  Aligned_cols=35  Identities=20%  Similarity=0.339  Sum_probs=31.8

Q ss_pred             CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577         296 HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       296 h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                      ....|..|..|||| .+||+...+|.|.+|++.+.+
T Consensus       228 ~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  228 EQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             CCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcch
Confidence            34579999999999 799999999999999999876

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.61  E-value=6.4e-05  Score=61.75  Aligned_cols=79  Identities=14%  Similarity=0.173  Sum_probs=48.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC-CcEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD-HTICL  324 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D-g~i~i  324 (384)
                      ....|..+|+|+.+.|+--....|-+|.+...      .+....+....-+...-....++|++ ++|+.+..| ..|.+
T Consensus       245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~------~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~v  317 (346)
T COG2706         245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPD------GGKLELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITV  317 (346)
T ss_pred             ceeEEEECCCCCEEEEecCCCCeEEEEEEcCC------CCEEEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEE
Confidence            45677889999744443323346778877532      12222222223344456788999998 688777765 67999


Q ss_pred             EecCCCC
Q psy4577         325 WDINATP  331 (384)
Q Consensus       325 wd~~~~~  331 (384)
                      +.+...+
T Consensus       318 f~~d~~T  324 (346)
T COG2706         318 FERDKET  324 (346)
T ss_pred             EEEcCCC
Confidence            9886543

>KOG1064|consensus

Probab=98.60  E-value=2.5e-07  Score=89.90  Aligned_cols=78  Identities=21%  Similarity=0.338  Sum_probs=58.2

Q ss_pred             eecCCceEEEEEcCCCCcEEEEE---eCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577         241 INHEGEVNRARYMPQNPCVIATK---TPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      ..|+.....+.|-.   .+++++   ++++.+.+||.....       .. .+ .-..|.+.++++++-|.. ++|+|||
T Consensus      2289 qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~-------~~-s~-v~~~H~~gaT~l~~~P~~-qllisgg 2355 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPP-------MN-SL-VHTCHDGGATVLAYAPKH-QLLISGG 2355 (2439)
T ss_pred             ccCCccccceeeee---hhhhccccCCCCCcccchhcccCc-------cc-ce-eeeecCCCceEEEEcCcc-eEEEecC
Confidence            35666666666655   245554   367899999986322       11 12 227899999999999997 7999999


Q ss_pred             CCCcEEEEecCCCC
Q psy4577         318 DDHTICLWDINATP  331 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~  331 (384)
                      .+|-|++||++..+
T Consensus      2356 r~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQ 2369 (2439)
T ss_pred             CcCcEEEeehHHHH
Confidence            99999999999876

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.59  E-value=9.2e-05  Score=60.85  Aligned_cols=106  Identities=10%  Similarity=0.024  Sum_probs=70.8

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      .-...+.|+|+|+++.++++-+..+.|..|++......   -........+....+..-.+++..+| ++.++.-..+.|
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I  207 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE---LSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRI  207 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC---EEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEE
T ss_pred             CcccccceEECCcchheeecccccceeEEEeccccccc---eeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEE
Confidence            34567899999999767778888999999998532100   00011122333333347889999999 788887788999


Q ss_pred             EEEecCCCCCCCccccceeeeeccCCcEeEEEEe-cCCC
Q psy4577         323 CLWDINATPKENRVIDAKTIFTGHTAVVELELIE-RLTK  360 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~  360 (384)
                      .++|.+ ++       .+..+.-....+++++|. |+..
T Consensus       208 ~~~~p~-G~-------~~~~i~~p~~~~t~~~fgg~~~~  238 (246)
T PF08450_consen  208 VVFDPD-GK-------LLREIELPVPRPTNCAFGGPDGK  238 (246)
T ss_dssp             EEEETT-SC-------EEEEEE-SSSSEEEEEEESTTSS
T ss_pred             EEECCC-cc-------EEEEEcCCCCCEEEEEEECCCCC
Confidence            999988 65       666665444578899994 4433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.59  E-value=9.7e-05  Score=62.90  Aligned_cols=110  Identities=11%  Similarity=0.152  Sum_probs=77.2

Q ss_pred             CCCceEEEeeCCC-eEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEccc
Q psy4577           6 HNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVC   84 (384)
Q Consensus         6 ~~~~~lat~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~   84 (384)
                      +++ -++.|..|| .+-|+|..+               .......+.-+.|.++..+|+|+ .++.+-....+-+.|+++
T Consensus       370 ~~e-~~vigt~dgD~l~iyd~~~---------------~e~kr~e~~lg~I~av~vs~dGK-~~vvaNdr~el~vididn  432 (668)
T COG4946         370 DPE-GDVIGTNDGDKLGIYDKDG---------------GEVKRIEKDLGNIEAVKVSPDGK-KVVVANDRFELWVIDIDN  432 (668)
T ss_pred             CCc-ceEEeccCCceEEEEecCC---------------ceEEEeeCCccceEEEEEcCCCc-EEEEEcCceEEEEEEecC
Confidence            444 377788888 888999876               23344455567899999999999 655656667888888887


Q ss_pred             CCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee--------cceeeeeccccccccceee
Q psy4577          85 VEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI--------NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------d~~v~~w~~~~~~~~~~~~  156 (384)
                      +              .+++.+...            .+-|....|+|+++.++        ...++++|+.+.+.++...
T Consensus       433 g--------------nv~~idkS~------------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT  486 (668)
T COG4946         433 G--------------NVRLIDKSE------------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT  486 (668)
T ss_pred             C--------------CeeEecccc------------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence            5              222222221            34477899999998887        6778999998888877544


Q ss_pred             cc
Q psy4577         157 TH  158 (384)
Q Consensus       157 ~~  158 (384)
                      ..
T Consensus       487 ~t  488 (668)
T COG4946         487 PT  488 (668)
T ss_pred             Cc
Confidence            33

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.57  E-value=1.3e-05  Score=70.81  Aligned_cols=93  Identities=10%  Similarity=0.138  Sum_probs=53.4

Q ss_pred             EEEcCCCCcEEEEEeCCCc--EEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC--------
Q psy4577         250 ARYMPQNPCVIATKTPSSD--VLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD--------  319 (384)
Q Consensus       250 v~~~p~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D--------  319 (384)
                      ..|+|+|+.++.+....+.  |++.|+.        .+..+.+ ...+..    ...||||| ++|+-.+..        
T Consensus       282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~--------~g~~~rl-t~~g~~----~~~~SPDG-~~Ia~~~~~~~~~~~~~  347 (419)
T PRK04043        282 GNFVEDDKRIVFVSDRLGYPNIFMKKLN--------SGSVEQV-VFHGKN----NSSVSTYK-NYIVYSSRETNNEFGKN  347 (419)
T ss_pred             cEECCCCCEEEEEECCCCCceEEEEECC--------CCCeEeC-ccCCCc----CceECCCC-CEEEEEEcCCCcccCCC
Confidence            3688998766666554454  5555654        2332222 222221    24899999 566555543        


Q ss_pred             -CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         320 -HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       320 -g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                       ..|.+.|+.++.       . ..+... .......|+|||+.+.-.
T Consensus       348 ~~~I~v~d~~~g~-------~-~~LT~~-~~~~~p~~SPDG~~I~f~  385 (419)
T PRK04043        348 TFNLYLISTNSDY-------I-RRLTAN-GVNQFPRFSSDGGSIMFI  385 (419)
T ss_pred             CcEEEEEECCCCC-------e-EECCCC-CCcCCeEECCCCCEEEEE
Confidence             367888887764       2 223322 223358899999975544

>KOG2114|consensus

Probab=98.55  E-value=7e-06  Score=74.52  Aligned_cols=91  Identities=11%  Similarity=0.153  Sum_probs=62.5

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      ....+|+++++..+++..+..+. ...|.+|.+.         +.......+..|...++|.++++..+.++++++  ..
T Consensus       169 ~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~---------gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~--e~  236 (933)
T KOG2114|consen  169 RGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLS---------GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS--EF  236 (933)
T ss_pred             cCCCCceeeEEecCCceeEEEEe-cceeEEEEec---------CCCcceeeeccCCccceeeecCCCCccEEEecC--ce
Confidence            45689999999998875333333 4579999984         444223447778889999999987533444443  47


Q ss_pred             EEEEecCCCCCCCccccceeeee-ccCCcEe
Q psy4577         322 ICLWDINATPKENRVIDAKTIFT-GHTAVVE  351 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~  351 (384)
                      +.+||....+       +.-++. ||...+.
T Consensus       237 l~fY~sd~~~-------~cfaf~~g~kk~~~  260 (933)
T KOG2114|consen  237 LYFYDSDGRG-------PCFAFEVGEKKEML  260 (933)
T ss_pred             EEEEcCCCcc-------eeeeecCCCeEEEE
Confidence            9999998766       656665 6665443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.53  E-value=1e-05  Score=70.71  Aligned_cols=109  Identities=11%  Similarity=0.139  Sum_probs=77.2

Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      .........|.+.+++|+.. .|+.|+.||.|.+||..        .+    +..+..+.-..+.++|||+| .+++.|+
T Consensus       253 vtsipL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~--------~~----~t~~~ka~~~P~~iaWHp~g-ai~~V~s  318 (545)
T PF11768_consen  253 VTSIPLPSQVICCARSPSED-KLVLGCEDGSIILYDTT--------RG----VTLLAKAEFIPTLIAWHPDG-AIFVVGS  318 (545)
T ss_pred             EEEEecCCcceEEecCcccc-eEEEEecCCeEEEEEcC--------CC----eeeeeeecccceEEEEcCCC-cEEEEEc
Confidence            34557889999999999985 89999999999999985        22    11222334457899999999 7999999


Q ss_pred             CCCcEEEEecCCCCCC------Cccccceeee---eccCCcEeEEEEecCCC
Q psy4577         318 DDHTICLWDINATPKE------NRVIDAKTIF---TGHTAVVELELIERLTK  360 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~------~~~~~~~~~~---~~h~~~v~~~~~sp~~~  360 (384)
                      .-|.+.+||+.-+.-.      ...+..+..+   -.+...+..+.|++...
T Consensus       319 ~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~  370 (545)
T PF11768_consen  319 EQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQ  370 (545)
T ss_pred             CCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCCC
Confidence            9999999998655311      0111112222   23566688899986544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.51  E-value=0.0001  Score=60.54  Aligned_cols=107  Identities=11%  Similarity=0.153  Sum_probs=66.7

Q ss_pred             eEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCCCcccee--eecCCCCceEEEEeCCCCCCeEEEee-CCCcE
Q psy4577         247 VNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHPDL--RLRGHQKEGYGLSWNPSLNGYLLSAS-DDHTI  322 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~~~~s~~~~~~l~s~s-~Dg~i  322 (384)
                      +....+.|+++ +|++.. .--.|.+|++.        ++...+..  .+ .....-..|.|+|++ ++..... -+++|
T Consensus       147 ~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~--------dg~L~~~~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV  215 (346)
T COG2706         147 VHSANFTPDGR-YLVVPDLGTDRIFLYDLD--------DGKLTPADPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTV  215 (346)
T ss_pred             cceeeeCCCCC-EEEEeecCCceEEEEEcc--------cCcccccccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEE
Confidence            66788999996 555543 33469999997        33322221  12 223456789999999 5655555 58999


Q ss_pred             EEEecCCCCCCCccccceeeeec---cCCcEeEEEEecCCCcccc
Q psy4577         323 CLWDINATPKENRVIDAKTIFTG---HTAVVELELIERLTKKADP  364 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~~~~~~~  364 (384)
                      -+|+......+-..++.+.++..   -.....++..+|||+.+-+
T Consensus       216 ~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYa  260 (346)
T COG2706         216 DVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYA  260 (346)
T ss_pred             EEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEE
Confidence            99999885322222223333322   2335678888999987544

>KOG0882|consensus

Probab=98.50  E-value=7.6e-07  Score=74.58  Aligned_cols=92  Identities=13%  Similarity=0.064  Sum_probs=67.1

Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc-----cceeeecCCCCceEEEEeCCCCCCe
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC-----HPDLRLRGHQKEGYGLSWNPSLNGY  312 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~h~~~i~~~~~s~~~~~~  312 (384)
                      ....-|..+|..+.+.|.+. .+++....|.|.-|......+.+...-..     .-+..+........++.|+|++ ..
T Consensus       138 ~fkklH~sPV~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~q  215 (558)
T KOG0882|consen  138 YFKKLHFSPVKKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQ  215 (558)
T ss_pred             eecccccCceEEEEeecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-Cc
Confidence            33446899999999999995 78888888999999986422211110100     1122333445678899999998 79


Q ss_pred             EEEeeCCCcEEEEecCCCC
Q psy4577         313 LLSASDDHTICLWDINATP  331 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~~~  331 (384)
                      +.+-+.|..|+++++++++
T Consensus       216 istl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  216 ISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             ccccCcccEEEEEEeccch
Confidence            9999999999999999986

>KOG4190|consensus

Probab=98.47  E-value=7.8e-07  Score=76.57  Aligned_cols=177  Identities=19%  Similarity=0.175  Sum_probs=110.6

Q ss_pred             EEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCe
Q psy4577          45 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPS  124 (384)
Q Consensus        45 ~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  124 (384)
                      +..+.||+..|..++--.+.. -++++|.|++|++|.+.....                 ........-++..|  ..+|
T Consensus       728 L~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD-----------------~~~tsaCQfTY~aH--kk~i  787 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGD-----------------EIGTSACQFTYQAH--KKPI  787 (1034)
T ss_pred             eecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccC-----------------ccccceeeeEhhhc--cCcc
Confidence            456679999999887655555 456999999999999975300                 00011111122333  6678


Q ss_pred             eEEEEecCceeee--cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEE
Q psy4577         125 LTAQWLPDVTRVI--NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIA  202 (384)
Q Consensus       125 ~~~~~~~~~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  202 (384)
                      .++.|..+.+.++  |+.+.+||.--.+....            +.+.|.                              
T Consensus       788 ~~igfL~~lr~i~ScD~giHlWDPFigr~Laq------------~~dapk------------------------------  825 (1034)
T KOG4190|consen  788 HDIGFLADLRSIASCDGGIHLWDPFIGRLLAQ------------MEDAPK------------------------------  825 (1034)
T ss_pred             cceeeeeccceeeeccCcceeecccccchhHh------------hhcCcc------------------------------
Confidence            8999999988887  99999998632222110            000000                              


Q ss_pred             EeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCC
Q psy4577         203 SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPD  282 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~  282 (384)
                                                            .+..+.|.++. +-+..-++|.++...+|+++|.+       
T Consensus       826 --------------------------------------~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaR-------  859 (1034)
T KOG4190|consen  826 --------------------------------------EGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDAR-------  859 (1034)
T ss_pred             --------------------------------------cCCCceeEecc-cCcchheeeeccchhhheeeecc-------
Confidence                                                  01112233321 11232244444788999999987       


Q ss_pred             CCCCccceee---ecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577         283 PNGECHPDLR---LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       283 ~~~~~~~~~~---~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                       .........   ..+..+-+.+++.-+.| ++++.+-..|.|.+-|.++++
T Consensus       860 -sce~~~E~kVcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  860 -SCEWTCELKVCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             -cccceeeEEeccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCc
Confidence             333222212   23445668899999999 799999999999999999997

>KOG0309|consensus

Probab=98.46  E-value=1.4e-06  Score=77.67  Aligned_cols=106  Identities=21%  Similarity=0.304  Sum_probs=86.5

Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ...+.+|...|+.+.|+|+.+..+|+++.|-.+..||++.         ...|+..+..-......++|+.-.+..||+ 
T Consensus       107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS---------p~~p~ys~~~w~s~asqVkwnyk~p~vlas-  176 (1081)
T KOG0309|consen  107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS---------PHRPFYSTSSWRSAASQVKWNYKDPNVLAS-  176 (1081)
T ss_pred             EEEEecCccceeccccCCCCCcceeeccccccceeeeccC---------CCcceeeeecccccCceeeecccCcchhhh-
Confidence            4556789999999999999999999999999999999973         334666666666678899999876655555 


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecC
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERL  358 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  358 (384)
                      +....|++||.+.+..      ++..+++|...|+.++|+.-
T Consensus       177 shg~~i~vwd~r~gs~------pl~s~K~~vs~vn~~~fnr~  212 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGST------PLCSLKGHVSSVNSIDFNRF  212 (1081)
T ss_pred             ccCCceEEEeccCCCc------ceEEecccceeeehHHHhhh
Confidence            5567899999998764      88999999999998888653

>KOG1645|consensus

Probab=98.43  E-value=6e-05  Score=62.71  Aligned_cols=70  Identities=17%  Similarity=0.290  Sum_probs=60.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|||..+.||..++.+..|+|.|+++              ......+..| ..+.+++|.-+..+.|..|-..|.|.|+
T Consensus       199 lafSp~~~GLl~~asl~nkiki~dlet--------------~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy  263 (463)
T KOG1645|consen  199 LAFSPFNEGLLGLASLGNKIKIMDLET--------------SCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY  263 (463)
T ss_pred             hccCccccceeeeeccCceEEEEeccc--------------ceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence            589999988899999999999999987              3455556666 5999999999999899999999999999


Q ss_pred             EcccC
Q psy4577          81 SVVCV   85 (384)
Q Consensus        81 d~~~~   85 (384)
                      |+...
T Consensus       264 D~R~~  268 (463)
T KOG1645|consen  264 DMRQP  268 (463)
T ss_pred             EccCC
Confidence            99764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.39  E-value=0.00045  Score=59.46  Aligned_cols=75  Identities=20%  Similarity=0.334  Sum_probs=51.4

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee---
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPS---SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS---  317 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s---  317 (384)
                      ...=+.+.|+|.+. +++.++-|   |.|-+||.         .+.......+.+-  ...-+.|+||+ .++.+.-   
T Consensus       315 e~~rNT~~fsp~~r-~il~agF~nl~gni~i~~~---------~~rf~~~~~~~~~--n~s~~~wspd~-qF~~~~~ts~  381 (561)
T COG5354         315 EQKRNTIFFSPHER-YILFAGFDNLQGNIEIFDP---------AGRFKVAGAFNGL--NTSYCDWSPDG-QFYDTDTTSE  381 (561)
T ss_pred             CcccccccccCccc-EEEEecCCccccceEEecc---------CCceEEEEEeecC--CceEeeccCCc-eEEEecCCCc
Confidence            34456788999995 66665544   78999997         4554444344443  34567899999 5665542   


Q ss_pred             ---CCCcEEEEecCCCC
Q psy4577         318 ---DDHTICLWDINATP  331 (384)
Q Consensus       318 ---~Dg~i~iwd~~~~~  331 (384)
                         .|..|+|||+....
T Consensus       382 k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         382 KLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             ccccCcceEEEEecCch
Confidence               47899999998765

>KOG1008|consensus

Probab=98.39  E-value=6e-07  Score=78.57  Aligned_cols=106  Identities=16%  Similarity=0.201  Sum_probs=65.3

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC----ceEEEEeCCCCCCeEEEeeCC-C
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK----EGYGLSWNPSLNGYLLSASDD-H  320 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~----~i~~~~~s~~~~~~l~s~s~D-g  320 (384)
                      .+..+...|-..+++++ ..||.|-+||..        .....++..+.....    .+..++|+|..+.+|++.+.| +
T Consensus       197 ~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~--------rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~  267 (783)
T KOG1008|consen  197 YVQGITVDPFSPNYFCS-NSDGDIAIWDTY--------RNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSI  267 (783)
T ss_pred             hcccceecCCCCCceec-cccCceeeccch--------hhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcc
Confidence            46667778855568877 459999999942        122233333332222    489999999877799999877 8


Q ss_pred             cEEEEecCCCC-CCCccccceeeee-----ccC---CcEeEEEEecCCC
Q psy4577         321 TICLWDINATP-KENRVIDAKTIFT-----GHT---AVVELELIERLTK  360 (384)
Q Consensus       321 ~i~iwd~~~~~-~~~~~~~~~~~~~-----~h~---~~v~~~~~sp~~~  360 (384)
                      +|+++|+..-. +.+........+.     .|.   ..|.+..||+..+
T Consensus       268 tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~  316 (783)
T KOG1008|consen  268 TIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASP  316 (783)
T ss_pred             eEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCc
Confidence            99999987532 1111111111111     133   4688888887664

>KOG3617|consensus

Probab=98.33  E-value=2.7e-05  Score=70.89  Aligned_cols=104  Identities=18%  Similarity=0.352  Sum_probs=71.0

Q ss_pred             CCCCCCCCceEEEeeC----CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCe
Q psy4577           1 VQWSPHNETILASSGT----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI   76 (384)
Q Consensus         1 v~fsp~~~~~lat~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~   76 (384)
                      .+|+|..+ +||+++-    .|.|.||-=..  +           |+.--+.+-   .+++++|+|..- +|+.|=.-|.
T Consensus        21 ~SWHPseP-lfAVA~fS~er~GSVtIfadtG--E-----------Pqr~Vt~P~---hatSLCWHpe~~-vLa~gwe~g~   82 (1416)
T KOG3617|consen   21 SSWHPSEP-LFAVASFSPERGGSVTIFADTG--E-----------PQRDVTYPV---HATSLCWHPEEF-VLAQGWEMGV   82 (1416)
T ss_pred             cccCCCCc-eeEEEEecCCCCceEEEEecCC--C-----------CCcccccce---ehhhhccChHHH-HHhhccccce
Confidence            37999998 8998864    57788884221  1           111111122   367799999977 7888888899


Q ss_pred             EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccc
Q psy4577          77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNT  148 (384)
Q Consensus        77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~  148 (384)
                      +.+|...+.+.                   +     .....|  ..++..+.|+++|+.++    -|.+.+|....
T Consensus        83 ~~v~~~~~~e~-------------------h-----tv~~th--~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   83 SDVQKTNTTET-------------------H-----TVVETH--PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eEEEecCCcee-------------------e-----eeccCC--CCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            99998766311                   1     112233  56788999999999988    68889997753

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.33  E-value=0.00014  Score=63.07  Aligned_cols=103  Identities=12%  Similarity=0.101  Sum_probs=59.2

Q ss_pred             EEEEc-CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEE-EEeCCCCCCeEEEeeCCC----cE
Q psy4577         249 RARYM-PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG-LSWNPSLNGYLLSASDDH----TI  322 (384)
Q Consensus       249 ~v~~~-p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~s~~~~~~l~s~s~Dg----~i  322 (384)
                      ...|. +++..++.....||.-+||-+..       .+.  ....+....-.|.. +.|++++..+++++..++    .|
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~-------~~~--~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~l  309 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDL-------DGG--KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHL  309 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEET-------TSS--EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEE
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcc-------ccc--ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEE
Confidence            45554 66666777777888877776642       121  12344444456644 788888745566666543    44


Q ss_pred             EEEecC-CCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         323 CLWDIN-ATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       323 ~iwd~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      +.-++. .+        .+..+......-..+.|||+++...-.|+.
T Consensus       310 Y~v~~~~~~--------~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  310 YRVSLDSGG--------EPKCLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             EEEETTETT--------EEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             EEEEeCCCC--------CeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence            444555 22        334444322222789999999988877764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.32  E-value=4.3e-06  Score=66.92  Aligned_cols=114  Identities=11%  Similarity=0.130  Sum_probs=76.5

Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC-----CceEEEEeCCCCCCeEEE
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ-----KEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~-----~~i~~~~~s~~~~~~l~s  315 (384)
                      ..|...|+++.|..+.+ .+++ ++|-.|.+|++...      ++. -.+..++.|.     .-|++..|+|..-..+.-
T Consensus       169 NaH~yhiNSiS~NsD~e-t~lS-aDdLrINLWnl~i~------D~s-FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY  239 (460)
T COG5170         169 NAHPYHINSISFNSDKE-TLLS-ADDLRINLWNLEII------DGS-FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY  239 (460)
T ss_pred             ccceeEeeeeeecCchh-eeee-ccceeeeecccccc------CCc-eEEEeccCccHHHHHHHHhhcccCHhHcceEEE
Confidence            46888899999999885 7777 45889999998642      222 2334555554     368999999975456666


Q ss_pred             eeCCCcEEEEecCCCCCC-------Cccccc--eeeeeccCCcEeEEEEecCCCccc
Q psy4577         316 ASDDHTICLWDINATPKE-------NRVIDA--KTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~-------~~~~~~--~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                      .+..|.|++-|++.....       ...++.  +.-+.+-.+.|.++.|+|.|+.++
T Consensus       240 SsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl  296 (460)
T COG5170         240 SSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL  296 (460)
T ss_pred             ecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE
Confidence            777899999999844210       000111  111223446799999999997554

>KOG1912|consensus

Probab=98.28  E-value=0.00013  Score=66.04  Aligned_cols=68  Identities=19%  Similarity=0.366  Sum_probs=53.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC-----------CCcEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN-----------EPWVIC   69 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~-----------~~~~l~   69 (384)
                      +.|+|.|  +||-|+ ...|.|-|..+              .+.+..+.-|...|+.+.|.|.           ..-+||
T Consensus        21 ~Dw~~~G--LiAygs-hslV~VVDs~s--------------~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliA   83 (1062)
T KOG1912|consen   21 ADWSPSG--LIAYGS-HSLVSVVDSRS--------------LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA   83 (1062)
T ss_pred             cccCccc--eEEEec-CceEEEEehhh--------------hhhhhccccCccceeEEEeccCCCchhccCccccceeEE
Confidence            4688876  688876 45788889876              5788888899999999999874           122577


Q ss_pred             EEecCCeEEEEEcccC
Q psy4577          70 SVSEDNIMQILSVVCV   85 (384)
Q Consensus        70 s~s~D~~i~vwd~~~~   85 (384)
                      ++...|.|.+||....
T Consensus        84 saD~~GrIil~d~~~~   99 (1062)
T KOG1912|consen   84 SADISGRIILVDFVLA   99 (1062)
T ss_pred             eccccCcEEEEEehhh
Confidence            7777899999999764

>KOG1912|consensus

Probab=98.27  E-value=8.6e-05  Score=67.04  Aligned_cols=65  Identities=12%  Similarity=0.242  Sum_probs=51.7

Q ss_pred             CCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC---CCcEEEEEecCCeEEEEEcc
Q psy4577           7 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN---EPWVICSVSEDNIMQILSVV   83 (384)
Q Consensus         7 ~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~---~~~~l~s~s~D~~i~vwd~~   83 (384)
                      ..-+||++.-.|.|.|||+..              ......+..|.++|.+++|-+.   .+++|+.-..-.++.+|+..
T Consensus        78 ~~lliAsaD~~GrIil~d~~~--------------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd  143 (1062)
T KOG1912|consen   78 SQLLIASADISGRIILVDFVL--------------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD  143 (1062)
T ss_pred             cceeEEeccccCcEEEEEehh--------------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc
Confidence            334788888899999999976              3445556788899999999764   44578788888999999998


Q ss_pred             cC
Q psy4577          84 CV   85 (384)
Q Consensus        84 ~~   85 (384)
                      +|
T Consensus       144 tG  145 (1062)
T KOG1912|consen  144 TG  145 (1062)
T ss_pred             CC
Confidence            87

>KOG4190|consensus

Probab=98.26  E-value=5.4e-06  Score=71.57  Aligned_cols=68  Identities=19%  Similarity=0.310  Sum_probs=54.0

Q ss_pred             CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577           8 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV   85 (384)
Q Consensus         8 ~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~   85 (384)
                      ++-+++++.|.+|++|.++.++++..       ...+.+++..|+.+|.++-|-.+-+ .+  +|.|+-|.+||.--+
T Consensus       747 ENSFiSASkDKTVKLWSik~EgD~~~-------tsaCQfTY~aHkk~i~~igfL~~lr-~i--~ScD~giHlWDPFig  814 (1034)
T KOG4190|consen  747 ENSFISASKDKTVKLWSIKPEGDEIG-------TSACQFTYQAHKKPIHDIGFLADLR-SI--ASCDGGIHLWDPFIG  814 (1034)
T ss_pred             ccceeeccCCceEEEEEeccccCccc-------cceeeeEhhhccCcccceeeeeccc-ee--eeccCcceeeccccc
Confidence            34589999999999999987653322       2457788899999999999998877 43  477899999998654

>KOG2041|consensus

Probab=98.24  E-value=0.0002  Score=64.30  Aligned_cols=110  Identities=25%  Similarity=0.404  Sum_probs=75.0

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .|+...+ -|-|+..+|.|.||-+-+..            ..--.+..-.++.|.+++|+.+|. .++.+=.||.|.+=.
T Consensus        78 TWNe~~Q-KLTtSDt~GlIiVWmlykgs------------W~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   78 TWNENNQ-KLTTSDTSGLIIVWMLYKGS------------WCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGS  143 (1189)
T ss_pred             Eeccccc-cccccCCCceEEEEeeeccc------------HHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEe
Confidence            4666666 47888889999999875421            000011122356799999999999 777889999999988


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccc
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~  152 (384)
                      ++..                ++|...-..   ...        ..+.|++|...++    +|...++|..+....
T Consensus       144 vdGN----------------RIwgKeLkg---~~l--------~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~  191 (1189)
T KOG2041|consen  144 VDGN----------------RIWGKELKG---QLL--------AHVLWSEDLEQALFKKANGETHLYDNQGNFER  191 (1189)
T ss_pred             eccc----------------eecchhcch---hec--------cceeecccHHHHHhhhcCCcEEEecccccHHH
Confidence            8765                566544321   122        2488999987665    888888887665443

>KOG4714|consensus

Probab=98.20  E-value=1.4e-06  Score=67.81  Aligned_cols=70  Identities=17%  Similarity=0.312  Sum_probs=58.7

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      +-+|..++++++|+.||.+.|||++...             -....+..|+.+|+.+.|+|..+..|++++.||.+--||
T Consensus       186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  186 CSHPAQQHLVCCGTDDGIVGLWDARNVA-------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             hCCcccccEEEEecCCCeEEEEEccccc-------------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            4478888899999999999999998621             334456789999999999998876788999999999998


Q ss_pred             ccc
Q psy4577          82 VVC   84 (384)
Q Consensus        82 ~~~   84 (384)
                      ..+
T Consensus       253 as~  255 (319)
T KOG4714|consen  253 AST  255 (319)
T ss_pred             CCC
Confidence            865

>KOG4532|consensus

Probab=98.18  E-value=4.7e-05  Score=59.88  Aligned_cols=99  Identities=11%  Similarity=0.087  Sum_probs=74.3

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEe
Q psy4577         247 VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWD  326 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd  326 (384)
                      ++++.++|+++ ++++.++...|..|.+...       +..........-...-.+..|+... ..+|++..||++.|||
T Consensus       161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~-------sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~D  231 (344)
T KOG4532|consen  161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDE-------SEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYD  231 (344)
T ss_pred             eeeeEEcCCCc-eEEEecCCCcceEEEeCCc-------cceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEE
Confidence            78999999996 9999999999999998632       1111111233344566789999987 6999999999999999


Q ss_pred             cCCCCCCCccccceeee----eccCCcEeEEEEecCCC
Q psy4577         327 INATPKENRVIDAKTIF----TGHTAVVELELIERLTK  360 (384)
Q Consensus       327 ~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~sp~~~  360 (384)
                      ++....      +....    ..|.++|..+.|+|-|.
T Consensus       232 VR~~~t------pm~~~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  232 VRNMAT------PMAEISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             eccccc------chhhhcccCCCCCCceEEEEecCCCc
Confidence            998652      22222    34899999999999775

>KOG2695|consensus

Probab=98.12  E-value=2.8e-06  Score=68.86  Aligned_cols=91  Identities=19%  Similarity=0.249  Sum_probs=71.4

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC-CCCCeEEEeeCCCc
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP-SLNGYLLSASDDHT  321 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~~l~s~s~Dg~  321 (384)
                      .+..|.++.|...+ +++..|..+|.|..+|+|...     .+...+...+ .|...|+++..-. ++ ++|.+.+.+|+
T Consensus       251 sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rn-----qG~~~~a~rl-yh~Ssvtslq~Lq~s~-q~LmaS~M~gk  322 (425)
T KOG2695|consen  251 SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRN-----QGNGWCAQRL-YHDSSVTSLQILQFSQ-QKLMASDMTGK  322 (425)
T ss_pred             cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecc-----cCCCcceEEE-EcCcchhhhhhhcccc-ceEeeccCcCc
Confidence            35678888888877 499999999999999998653     2333343333 4888999988776 55 69999999999


Q ss_pred             EEEEecCCCCCCCccccc---eeeeeccCC
Q psy4577         322 ICLWDINATPKENRVIDA---KTIFTGHTA  348 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~---~~~~~~h~~  348 (384)
                      |++||.+..+       +   +.++.||..
T Consensus       323 ikLyD~R~~K-------~~~~V~qYeGHvN  345 (425)
T KOG2695|consen  323 IKLYDLRATK-------CKKSVMQYEGHVN  345 (425)
T ss_pred             eeEeeehhhh-------cccceeeeecccc
Confidence            9999999876       5   888888844

>KOG3914|consensus

Probab=98.07  E-value=8.3e-06  Score=67.49  Aligned_cols=72  Identities=18%  Similarity=0.221  Sum_probs=57.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+||++ .|+|+..|..|+|=.+...             ...-...-||+.-|..++.-++..  |+|+|.|+++++|
T Consensus       157 VavS~D~~-~IitaDRDEkIRvs~ypa~-------------f~IesfclGH~eFVS~isl~~~~~--LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  157 VAVSPDDQ-FIITADRDEKIRVSRYPAT-------------FVIESFCLGHKEFVSTISLTDNYL--LLSGSGDKTLRLW  220 (390)
T ss_pred             eeecCCCC-EEEEecCCceEEEEecCcc-------------cchhhhccccHhheeeeeeccCce--eeecCCCCcEEEE
Confidence            57999997 7999999999999877541             122233458999999999987755  6799999999999


Q ss_pred             EcccCCCc
Q psy4577          81 SVVCVEPF   88 (384)
Q Consensus        81 d~~~~~~~   88 (384)
                      |+.+++.+
T Consensus       221 d~~sgk~L  228 (390)
T KOG3914|consen  221 DITSGKLL  228 (390)
T ss_pred             ecccCCcc
Confidence            99987443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.01  E-value=2.2e-05  Score=68.72  Aligned_cols=66  Identities=15%  Similarity=0.256  Sum_probs=52.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++++|+++ .|+.|+.||+|.+||....               ... +.-+.-..+.++|+|+|. +++.|+.-|.+.+|
T Consensus       265 ca~sp~E~-kLvlGC~DgSiiLyD~~~~---------------~t~-~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~F  326 (545)
T PF11768_consen  265 CARSPSED-KLVLGCEDGSIILYDTTRG---------------VTL-LAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCF  326 (545)
T ss_pred             EecCcccc-eEEEEecCCeEEEEEcCCC---------------eee-eeeecccceEEEEcCCCc-EEEEEcCCceEEEE
Confidence            47899998 6999999999999998751               111 112234678999999999 88899999999999


Q ss_pred             Eccc
Q psy4577          81 SVVC   84 (384)
Q Consensus        81 d~~~   84 (384)
                      |+.-
T Consensus       327 D~AL  330 (545)
T PF11768_consen  327 DMAL  330 (545)
T ss_pred             Eeec
Confidence            9865

>smart00320 WD40 WD40 repeats

Probab=97.96  E-value=2.1e-05  Score=43.02  Aligned_cols=37  Identities=43%  Similarity=0.598  Sum_probs=32.7

Q ss_pred             ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEe
Q psy4577         289 PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWD  326 (384)
Q Consensus       289 ~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd  326 (384)
                      +...+..|...|.++.|++++ .++++++.|+.+++||
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            345677888999999999998 7999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.96  E-value=3.2e-05  Score=42.26  Aligned_cols=38  Identities=26%  Similarity=0.522  Sum_probs=32.6

Q ss_pred             eeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577          43 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus        43 ~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .....+.+|...|.+++|++.+. ++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            34556678889999999999987 788999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1920|consensus

Probab=97.95  E-value=0.0017  Score=61.99  Aligned_cols=55  Identities=15%  Similarity=0.269  Sum_probs=38.5

Q ss_pred             EEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577          11 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus        11 lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      ++.+..+|.|.+-|.++.            ..++..   --...|.+++|+||+. +++-...++++.+-.
T Consensus        83 i~v~~~~G~iilvd~et~------------~~eivg---~vd~GI~aaswS~Dee-~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   83 ICVITALGDIILVDPETL------------ELEIVG---NVDNGISAASWSPDEE-LLALITGRQTLLFMT  137 (1265)
T ss_pred             EEEEecCCcEEEEccccc------------ceeeee---eccCceEEEeecCCCc-EEEEEeCCcEEEEEe
Confidence            666677788888887751            122222   2246899999999999 777778888877643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.89  E-value=0.0098  Score=49.17  Aligned_cols=62  Identities=16%  Similarity=0.220  Sum_probs=42.1

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      -.+.+-+|++++++..+.+|+-..+.+.+||..        ++.......+    ..+..++-.+++  +++|.+.
T Consensus       215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~--------tg~~~~~~~l----~D~cGva~~~~~--f~~ssG~  276 (305)
T PF07433_consen  215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA--------TGRLLGSVPL----PDACGVAPTDDG--FLVSSGQ  276 (305)
T ss_pred             hCCceEEEEEeCCCCEEEEECCCCCEEEEEECC--------CCCEeecccc----CceeeeeecCCc--eEEeCCC
Confidence            357789999999997566777778899999986        4543322222    246677777764  6666554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.88  E-value=0.0075  Score=51.54  Aligned_cols=72  Identities=8%  Similarity=-0.105  Sum_probs=48.6

Q ss_pred             CCCCCCceEEEee---------CCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccc-------ccceEEEEEccCCCc
Q psy4577           3 WSPHNETILASSG---------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-------TAKISDFSWNPNEPW   66 (384)
Q Consensus         3 fsp~~~~~lat~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh-------~~~V~~l~~~~~~~~   66 (384)
                      +|||++.+.++.+         .+..|.+||..+..              ....+.--       ...-..++++|||+.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--------------~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~  118 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--------------PIADIELPEGPRFLVGTYPWMTSLTPDNKT  118 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--------------EEeEEccCCCchhhccCccceEEECCCCCE
Confidence            7899986666666         68899999998732              22222210       112347889999995


Q ss_pred             EEEEE-ecCCeEEEEEcccCCCc
Q psy4577          67 VICSV-SEDNIMQILSVVCVEPF   88 (384)
Q Consensus        67 ~l~s~-s~D~~i~vwd~~~~~~~   88 (384)
                      ++++- +.+..|-+.|+.+++.+
T Consensus       119 l~V~n~~p~~~V~VvD~~~~kvv  141 (352)
T TIGR02658       119 LLFYQFSPSPAVGVVDLEGKAFV  141 (352)
T ss_pred             EEEecCCCCCEEEEEECCCCcEE
Confidence            55444 33899999999887543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3

Probab=97.88  E-value=3e-06  Score=54.15  Aligned_cols=66  Identities=52%  Similarity=0.882  Sum_probs=45.4

Q ss_pred             eeeeccccccccceeecccccccceeeeeccCCC-CCCCCccceeEEEEeeecc-CCCCeEEEEEeec
Q psy4577         141 YKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT-RPEGKDYSIHRLILGTHTS-DEQNHLLIASVQL  206 (384)
Q Consensus       141 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~  206 (384)
                      .++|....+.+|+++..+..+|||++++|.|+.. ...+.....+.+++|+++. .+.|++.|.++.+
T Consensus         4 ~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~~~~~~~~ll~GT~t~~~~~n~l~v~~~~~   71 (74)
T PF12265_consen    4 YELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNRNYPHSQYLLLGTQTSGQEQNYLYVMKVSL   71 (74)
T ss_dssp             HHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT-SEEEEEEEEE---SS-S-EEEEEEEEEE
T ss_pred             eeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCCCCccEEEEEEEECcCCCCCCEEEEEEEeC
Confidence            4678888888999999999999999999999987 4444345567899999998 4789999988874

1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.86  E-value=0.0018  Score=55.50  Aligned_cols=106  Identities=14%  Similarity=0.111  Sum_probs=82.6

Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCC-cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSS-DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ....+|.+.|.-..+..+++ -++.|..|| .+-|+|.+        .+.   ...+.+.-+.|.+++.+|+| .+++.+
T Consensus       353 ~iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~--------~~e---~kr~e~~lg~I~av~vs~dG-K~~vva  419 (668)
T COG4946         353 SIQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKD--------GGE---VKRIEKDLGNIEAVKVSPDG-KKVVVA  419 (668)
T ss_pred             eEEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecC--------Cce---EEEeeCCccceEEEEEcCCC-cEEEEE
Confidence            34457888898888888875 788899999 89999985        332   33456666789999999999 788888


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                      -....|.+.|+.+++       .-..-+...+-|++.+|||++..++
T Consensus       420 Ndr~el~vididngn-------v~~idkS~~~lItdf~~~~nsr~iA  459 (668)
T COG4946         420 NDRFELWVIDIDNGN-------VRLIDKSEYGLITDFDWHPNSRWIA  459 (668)
T ss_pred             cCceEEEEEEecCCC-------eeEecccccceeEEEEEcCCceeEE
Confidence            888899999999986       3333344556799999999998655

>KOG4640|consensus

Probab=97.77  E-value=0.00018  Score=63.60  Aligned_cols=93  Identities=19%  Similarity=0.253  Sum_probs=74.7

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceE-EEEeCCCCCCeEEEeeCCCcEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGY-GLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ..+..+.|+|.-. ++|.+..+|.|.+..++           .+.+.++.-|...++ +++|.||| .+||.|=.||+|+
T Consensus        21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-----------~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~   87 (665)
T KOG4640|consen   21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-----------WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIR   87 (665)
T ss_pred             cceEEEEEcCccc-hhheeccCCcEEEEEec-----------cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEE
Confidence            4577899999885 99999999999998874           345667776777777 99999999 8999999999999


Q ss_pred             EEecCCCCCCCccccceeee-eccCCcEeEEEEec
Q psy4577         324 LWDINATPKENRVIDAKTIF-TGHTAVVELELIER  357 (384)
Q Consensus       324 iwd~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp  357 (384)
                      +-|+.++.       .+... ..-...|.++-|.|
T Consensus        88 L~Dve~~~-------~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   88 LHDVEKGG-------RLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EEEccCCC-------ceeccccccccchheeeccc
Confidence            99999887       44442 22446688888864

>KOG4640|consensus

Probab=97.75  E-value=9.6e-05  Score=65.18  Aligned_cols=70  Identities=14%  Similarity=0.343  Sum_probs=57.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceE-EEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS-DFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~-~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      +.|+|.-+ ++|++..+|.|.+..+.-               +.+.++.-|...|+ +++|.|||+ +||.|=.||+|++
T Consensus        26 ~ewnP~~d-LiA~~t~~gelli~R~n~---------------qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L   88 (665)
T KOG4640|consen   26 IEWNPKMD-LIATRTEKGELLIHRLNW---------------QRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRL   88 (665)
T ss_pred             EEEcCccc-hhheeccCCcEEEEEecc---------------ceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEE
Confidence            36899987 899999999888887763               45555555556677 999999999 9999999999999


Q ss_pred             EEcccCCC
Q psy4577          80 LSVVCVEP   87 (384)
Q Consensus        80 wd~~~~~~   87 (384)
                      -|++.+..
T Consensus        89 ~Dve~~~~   96 (665)
T KOG4640|consen   89 HDVEKGGR   96 (665)
T ss_pred             EEccCCCc
Confidence            99988743

>KOG1645|consensus

Probab=97.62  E-value=0.00016  Score=60.32  Aligned_cols=80  Identities=6%  Similarity=0.149  Sum_probs=66.0

Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      ..|...|..++|+|...-++..++.+.+|+|.|++        +..  ....+..| ..+++++|.-|...+|..|-..|
T Consensus       190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle--------t~~--~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG  258 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE--------TSC--VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNG  258 (463)
T ss_pred             cccchhhhhhccCccccceeeeeccCceEEEEecc--------cce--eeeheecc-CCceeeeeccCCcceeEEeccCc
Confidence            35677899999999875588999999999999996        222  23355556 68999999998778999999999


Q ss_pred             cEEEEecCCCC
Q psy4577         321 TICLWDINATP  331 (384)
Q Consensus       321 ~i~iwd~~~~~  331 (384)
                      .|.|||++..+
T Consensus       259 ~VlvyD~R~~~  269 (463)
T KOG1645|consen  259 MVLVYDMRQPE  269 (463)
T ss_pred             eEEEEEccCCC
Confidence            99999999765

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.51  E-value=0.0064  Score=41.75  Aligned_cols=64  Identities=11%  Similarity=0.096  Sum_probs=49.0

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .|..+|.+-|++||.|..|+||+-.                +++..... .+.|++|+-...+.  ++.+-.+|+|-+++
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~~----------------e~~~Ei~e-~~~v~~L~~~~~~~--F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKGD----------------EIVAEITE-TDKVTSLCSLGGGR--FAYALANGTVGVYD   69 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeCC----------------cEEEEEec-ccceEEEEEcCCCE--EEEEecCCEEEEEe
Confidence            4667777789999999999999865                45555554 35788888776655  67899999999987


Q ss_pred             ccc
Q psy4577          82 VVC   84 (384)
Q Consensus        82 ~~~   84 (384)
                      -..
T Consensus        70 ~~~   72 (111)
T PF14783_consen   70 RSQ   72 (111)
T ss_pred             Ccc
Confidence            543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.50  E-value=0.0023  Score=56.69  Aligned_cols=104  Identities=8%  Similarity=0.085  Sum_probs=61.5

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCC--cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSS--DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      ..+......|+|+|+.++++.+.++  .|.++|+.        .+...   .+..+........|+|||..++++....+
T Consensus       231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~--------~g~~~---~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g  299 (419)
T PRK04043        231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN--------TKTLT---QITNYPGIDVNGNFVEDDKRIVFVSDRLG  299 (419)
T ss_pred             CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC--------CCcEE---EcccCCCccCccEECCCCCEEEEEECCCC
Confidence            4455667889999976666665554  56666764        33322   23333333345689999944444443444


Q ss_pred             --cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         321 --TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       321 --~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                        .|++.|+.+++       ..+... ...  ....|||||+.++-+..
T Consensus       300 ~~~Iy~~dl~~g~-------~~rlt~-~g~--~~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        300 YPNIFMKKLNSGS-------VEQVVF-HGK--NNSSVSTYKNYIVYSSR  338 (419)
T ss_pred             CceEEEEECCCCC-------eEeCcc-CCC--cCceECCCCCEEEEEEc
Confidence              67778887765       222211 111  12489999998776654

>KOG2066|consensus

Probab=97.39  E-value=0.0066  Score=55.64  Aligned_cols=74  Identities=11%  Similarity=0.145  Sum_probs=50.9

Q ss_pred             CceEEEEEcCC----CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         245 GEVNRARYMPQ----NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       245 ~~v~~v~~~p~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      .++.+|+++|+    ....+++|+.-| +.++..+-.       +...++ .+..-.++|.++.|.  | .++|-++.+ 
T Consensus       113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl-------gnk~~v-~l~~~eG~I~~i~W~--g-~lIAWand~-  179 (846)
T KOG2066|consen  113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL-------GNKDSV-VLSEGEGPIHSIKWR--G-NLIAWANDD-  179 (846)
T ss_pred             CcceeEEeccchhhhhhhheeecCcce-EEEehhhhh-------cCccce-eeecCccceEEEEec--C-cEEEEecCC-
Confidence            34667777776    123788888888 777775532       222222 455567899999996  4 578877766 


Q ss_pred             cEEEEecCCCC
Q psy4577         321 TICLWDINATP  331 (384)
Q Consensus       321 ~i~iwd~~~~~  331 (384)
                      -|++||+.+.+
T Consensus       180 Gv~vyd~~~~~  190 (846)
T KOG2066|consen  180 GVKVYDTPTRQ  190 (846)
T ss_pred             CcEEEeccccc
Confidence            58999999886

>KOG3617|consensus

Probab=97.38  E-value=0.0049  Score=56.97  Aligned_cols=68  Identities=16%  Similarity=0.266  Sum_probs=56.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|..- +||.|-.-|.+.+|...+              .+.......|+.+|..+.||++|. .++|+..-|.+.+|
T Consensus        65 LCWHpe~~-vLa~gwe~g~~~v~~~~~--------------~e~htv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lw  128 (1416)
T KOG3617|consen   65 LCWHPEEF-VLAQGWEMGVSDVQKTNT--------------TETHTVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLW  128 (1416)
T ss_pred             hccChHHH-HHhhccccceeEEEecCC--------------ceeeeeccCCCCCceeEEecCCCC-eEEEcCCCceeEEE
Confidence            57999875 789998889999999876              233444467899999999999999 77799999999999


Q ss_pred             Eccc
Q psy4577          81 SVVC   84 (384)
Q Consensus        81 d~~~   84 (384)
                      ....
T Consensus       129 r~d~  132 (1416)
T KOG3617|consen  129 RYDV  132 (1416)
T ss_pred             Eeee
Confidence            8753

>KOG1008|consensus

Probab=97.37  E-value=0.00014  Score=64.33  Aligned_cols=107  Identities=16%  Similarity=0.183  Sum_probs=70.8

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      ..++++|-.+.+ ++.+|.....+.++|+|+..         .....+  ....+..+...|-.+.|+++-. ||.|.+|
T Consensus       156 gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~---------~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiw  222 (783)
T KOG1008|consen  156 GQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSL---------DSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIW  222 (783)
T ss_pred             CccccccccCcc-hhhcccccchhhhhhhhhhh---------hhhhhh--hhhhcccceecCCCCCceeccc-cCceeec
Confidence            345788886664 88899988999999997321         111111  2234566778884447887776 9999999


Q ss_pred             ec-CCCCCCCccccceeeeeccCC----cEeEEEEecCCCccccccccccc
Q psy4577         326 DI-NATPKENRVIDAKTIFTGHTA----VVELELIERLTKKADPVCTLEKA  371 (384)
Q Consensus       326 d~-~~~~~~~~~~~~~~~~~~h~~----~v~~~~~sp~~~~~~~~c~~~~~  371 (384)
                      |. +.-+.      +++.+.....    .+..++|+|..+.+.++|+-+..
T Consensus       223 D~~rnien------pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~  267 (783)
T KOG1008|consen  223 DTYRNIEN------PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSI  267 (783)
T ss_pred             cchhhhcc------HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcc
Confidence            94 33221      4444443222    38999999999888888765443

>KOG1920|consensus

Probab=97.36  E-value=0.036  Score=53.59  Aligned_cols=77  Identities=25%  Similarity=0.373  Sum_probs=50.6

Q ss_pred             CceEEEEEcCCCCcEEEEE---eCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE---eeC
Q psy4577         245 GEVNRARYMPQNPCVIATK---TPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS---ASD  318 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s---~s~  318 (384)
                      +.-.+++|-|.|. ++|+-   +.|+.|.+|..+....     +.  -...+.....+|..++|+.++ ..||.   ...
T Consensus       242 ~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~h-----g~--f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e  312 (1265)
T KOG1920|consen  242 GLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRH-----GE--FVLPFPLDEKEVEELAWNSNS-DILAVVTSNLE  312 (1265)
T ss_pred             ccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccc-----cc--cccCCcccccchheeeecCCC-Cceeeeecccc
Confidence            3446899999995 77764   3466899998742110     11  111223333458999999997 68887   555


Q ss_pred             CCcEEEEecCCC
Q psy4577         319 DHTICLWDINAT  330 (384)
Q Consensus       319 Dg~i~iwd~~~~  330 (384)
                      ...|++|-+.+.
T Consensus       313 ~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  313 NSLVQLWTTGNY  324 (1265)
T ss_pred             cceEEEEEecCe
Confidence            566999988765

>KOG2079|consensus

Probab=97.35  E-value=0.00072  Score=63.67  Aligned_cols=82  Identities=23%  Similarity=0.270  Sum_probs=64.3

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCcccc
Q psy4577         259 VIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVID  338 (384)
Q Consensus       259 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  338 (384)
                      .++.|+.-|.+-..|.+         +...+...-..-.++|++++|+.+| ..++.|-.+|.|.+||+..++       
T Consensus       101 ~ivi~Ts~ghvl~~d~~---------~nL~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k-------  163 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMT---------GNLGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAK-------  163 (1206)
T ss_pred             eEEEEcCchhhhhhhhh---------cccchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCc-------
Confidence            78888889999999884         3333322223345699999999999 799999999999999999988       


Q ss_pred             ceeeeeccCCcEeEEEEec
Q psy4577         339 AKTIFTGHTAVVELELIER  357 (384)
Q Consensus       339 ~~~~~~~h~~~v~~~~~sp  357 (384)
                      +++.+..|..+.+.+-++-
T Consensus       164 ~l~~i~e~~ap~t~vi~v~  182 (1206)
T KOG2079|consen  164 ILKVITEHGAPVTGVIFVG  182 (1206)
T ss_pred             ceeeeeecCCccceEEEEE
Confidence            8888887777776666554

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.35  E-value=0.014  Score=53.06  Aligned_cols=87  Identities=18%  Similarity=0.126  Sum_probs=59.7

Q ss_pred             EEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccc----eeeecCCCCceEEEEeCCCCCCeEE
Q psy4577         239 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHP----DLRLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       239 ~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                      ..+.-......++++|+|+++++++..+.+|.|.|+.......+  +...+    ..+..- ...-...+|.++| ..+.
T Consensus       315 ~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~--~~~~~~~~vvaevev-GlGPLHTaFDg~G-~ayt  390 (635)
T PRK02888        315 RYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD--GKIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYT  390 (635)
T ss_pred             EEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh--ccCCccceEEEeecc-CCCcceEEECCCC-CEEE
Confidence            33445566788999999998888888899999999975332110  00111    111111 1233468899998 7899


Q ss_pred             EeeCCCcEEEEecCC
Q psy4577         315 SASDDHTICLWDINA  329 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~  329 (384)
                      |---|..|..||+..
T Consensus       391 slf~dsqv~kwn~~~  405 (635)
T PRK02888        391 TLFLDSQIVKWNIEA  405 (635)
T ss_pred             eEeecceeEEEehHH
Confidence            999999999999876

>KOG3621|consensus

Probab=97.25  E-value=0.0015  Score=58.76  Aligned_cols=107  Identities=12%  Similarity=0.066  Sum_probs=73.1

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ...|.--+++..++ +++.|+.-|.+++|+..        .+ ........+-.+.+..+..|++. .++|.|+..|.|.
T Consensus        33 ~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~--------~~-~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~  101 (726)
T KOG3621|consen   33 PARVKLTCVDATEE-YLAMGSSAGSVYLYNRH--------TG-EMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVS  101 (726)
T ss_pred             cceEEEEEeecCCc-eEEEecccceEEEEecC--------ch-hhhcccccCccceEEEEEecchh-HhhhhhcCCceEE
Confidence            34455555667775 89999999999999974        22 22233444445566777888886 7999999999999


Q ss_pred             EEecCCCCCCCccccceeee-eccCCcEeEEEEecCCCccc
Q psy4577         324 LWDINATPKENRVIDAKTIF-TGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       324 iwd~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~  363 (384)
                      ++.+....+...  ..+..+ +.|...|++++|++++..+.
T Consensus       102 v~ql~~~~p~~~--~~~t~~d~~~~~rVTal~Ws~~~~k~y  140 (726)
T KOG3621|consen  102 VFQLNKELPRDL--DYVTPCDKSHKCRVTALEWSKNGMKLY  140 (726)
T ss_pred             eehhhccCCCcc--eeeccccccCCceEEEEEecccccEEe
Confidence            999887442100  011111 13788999999999998644

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.23  E-value=0.013  Score=51.83  Aligned_cols=72  Identities=15%  Similarity=0.240  Sum_probs=43.9

Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC-CCc--EEEEe
Q psy4577         250 ARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD-DHT--ICLWD  326 (384)
Q Consensus       250 v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~-Dg~--i~iwd  326 (384)
                      =.|+|+|+.++.+.+..|.-.||-+..       .+......++.+-..  ..-.|+||| .+|+..+. +|.  |.+.|
T Consensus       287 Ps~spdG~~ivf~Sdr~G~p~I~~~~~-------~g~~~~riT~~~~~~--~~p~~SpdG-~~i~~~~~~~g~~~i~~~~  356 (425)
T COG0823         287 PSWSPDGSKIVFTSDRGGRPQIYLYDL-------EGSQVTRLTFSGGGN--SNPVWSPDG-DKIVFESSSGGQWDIDKND  356 (425)
T ss_pred             ccCCCCCCEEEEEeCCCCCcceEEECC-------CCCceeEeeccCCCC--cCccCCCCC-CEEEEEeccCCceeeEEec
Confidence            356899987777777778777776643       222222233333222  277899999 57766664 344  66666


Q ss_pred             cCCCC
Q psy4577         327 INATP  331 (384)
Q Consensus       327 ~~~~~  331 (384)
                      +.++.
T Consensus       357 ~~~~~  361 (425)
T COG0823         357 LASGG  361 (425)
T ss_pred             cCCCC
Confidence            66554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.20  E-value=0.093  Score=43.59  Aligned_cols=83  Identities=8%  Similarity=-0.017  Sum_probs=48.4

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCC-------cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSS-------DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      |.-.|.-+++.++|. .++..-..|       .|-+++......     ....+......-.+.|-+|++++++..+.+|
T Consensus       161 ~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~-----~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t  234 (305)
T PF07433_consen  161 HQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALR-----LLPAPEEQWRRLNGYIGSIAADRDGRLIAVT  234 (305)
T ss_pred             cccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcce-----eccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence            667788888888884 433332222       233333221000     0000111122344678899999998434466


Q ss_pred             eeCCCcEEEEecCCCC
Q psy4577         316 ASDDHTICLWDINATP  331 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~  331 (384)
                      +-.-+.+.+||..+++
T Consensus       235 sPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  235 SPRGGRVAVWDAATGR  250 (305)
T ss_pred             CCCCCEEEEEECCCCC
Confidence            6688999999999987

>KOG1275|consensus

Probab=97.18  E-value=0.019  Score=53.69  Aligned_cols=72  Identities=11%  Similarity=0.064  Sum_probs=51.1

Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEec
Q psy4577         249 RARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI  327 (384)
Q Consensus       249 ~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~  327 (384)
                      -+.|+|.-...++.++..|...+-|.....      .....+..+......+..+.+|+++ ..+|-|..+|.|.+|--
T Consensus       270 flrf~Psl~t~~~V~S~sGq~q~vd~~~ls------NP~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLS------NPPAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             hhhhcccccceEEEEecccceeeccccccC------CCccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeecC
Confidence            356777766678888889999998843211      1111223333344559999999999 79999999999999973

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.10  E-value=0.18  Score=44.75  Aligned_cols=30  Identities=17%  Similarity=0.482  Sum_probs=25.5

Q ss_pred             cceEEEEEccCCCcEEEEEecCCeEEEEEccc
Q psy4577          53 AKISDFSWNPNEPWVICSVSEDNIMQILSVVC   84 (384)
Q Consensus        53 ~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~   84 (384)
                      +.|.++.|..+.. + +....||+++++|+.+
T Consensus        81 ~~iv~~~wt~~e~-L-vvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   81 GRIVGMGWTDDEE-L-VVVQSDGTVRVYDLFG  110 (410)
T ss_pred             CCEEEEEECCCCe-E-EEEEcCCEEEEEeCCC
Confidence            7899999998766 4 4778999999999865

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1275|consensus

Probab=97.10  E-value=0.011  Score=55.06  Aligned_cols=60  Identities=17%  Similarity=0.248  Sum_probs=48.4

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEec---------CCeEEE
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE---------DNIMQI   79 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~---------D~~i~v   79 (384)
                      .+|.+|...|+|.+-|...              .+.++++..|++.|.++..  .|. +|+||+.         |.-|+|
T Consensus       188 r~lf~G~t~G~V~LrD~~s--------------~~~iht~~aHs~siSDfDv--~GN-lLitCG~S~R~~~l~~D~FvkV  250 (1118)
T KOG1275|consen  188 RNLFCGDTRGTVFLRDPNS--------------FETIHTFDAHSGSISDFDV--QGN-LLITCGYSMRRYNLAMDPFVKV  250 (1118)
T ss_pred             cEEEeecccceEEeecCCc--------------Cceeeeeeccccceeeeec--cCC-eEEEeecccccccccccchhhh
Confidence            3789999999999999886              5788999999999987665  456 7888865         666788


Q ss_pred             EEcccC
Q psy4577          80 LSVVCV   85 (384)
Q Consensus        80 wd~~~~   85 (384)
                      ||++..
T Consensus       251 YDLRmm  256 (1118)
T KOG1275|consen  251 YDLRMM  256 (1118)
T ss_pred             hhhhhh
Confidence            888765

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.02  E-value=0.012  Score=40.38  Aligned_cols=67  Identities=12%  Similarity=0.067  Sum_probs=48.5

Q ss_pred             eEEEEEc---CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         247 VNRARYM---PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       247 v~~v~~~---p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      |+++++.   .+|++-|+.||+|..||+|+-.            ..+.++.. ...|++++-...  ..|+-+-.+|+|-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~------------e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVG   66 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD------------EIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVG   66 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC------------cEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEE
Confidence            4555554   4666789999999999999852            13344443 346888877776  3789999999999


Q ss_pred             EEecC
Q psy4577         324 LWDIN  328 (384)
Q Consensus       324 iwd~~  328 (384)
                      +|+-.
T Consensus        67 vY~~~   71 (111)
T PF14783_consen   67 VYDRS   71 (111)
T ss_pred             EEeCc
Confidence            98763

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.00  E-value=0.14  Score=41.54  Aligned_cols=69  Identities=9%  Similarity=0.238  Sum_probs=44.1

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEE---EecccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF---IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ   78 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~   78 (384)
                      +.+++|+ +||.- .|..|-|-..+.+-            ..++.   +.+...-.=.-++||||+. +||.+...|+|+
T Consensus         4 ~~~~~Gk-~lAi~-qd~~iEiRsa~Ddf------------~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~   68 (282)
T PF15492_consen    4 ALSSDGK-LLAIL-QDQCIEIRSAKDDF------------SSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIR   68 (282)
T ss_pred             eecCCCc-EEEEE-eccEEEEEeccCCc------------hheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEE
Confidence            3466776 55554 67777776554311            11111   1111122456789999999 999999999999


Q ss_pred             EEEcccC
Q psy4577          79 ILSVVCV   85 (384)
Q Consensus        79 vwd~~~~   85 (384)
                      ++|+.+.
T Consensus        69 vfdl~g~   75 (282)
T PF15492_consen   69 VFDLMGS   75 (282)
T ss_pred             EEecccc
Confidence            9999764

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.99  E-value=0.17  Score=42.68  Aligned_cols=101  Identities=8%  Similarity=0.027  Sum_probs=64.1

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC-cE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH-TI  322 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg-~i  322 (384)
                      -..-++|+|||+++.++++=+..+.|.-|++.......  .+. .....+..+.+..-.++...+| .+-+++-.+| .|
T Consensus       162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~--~~~-~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v  237 (307)
T COG3386         162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI--GGR-RGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRV  237 (307)
T ss_pred             EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc--CCc-ceEEEccCCCCCCCceEEeCCC-CEEEecccCCceE
Confidence            44568899999998777776777888888875211110  111 2222333344556677778887 4554444443 99


Q ss_pred             EEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577         323 CLWDINATPKENRVIDAKTIFTGHTAVVELELIE  356 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  356 (384)
                      ..|+.. ++       .+..+.-....+++++|-
T Consensus       238 ~~~~pd-G~-------l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         238 VRFNPD-GK-------LLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             EEECCC-Cc-------EEEEEECCCCCCccceEe
Confidence            999998 66       666666555667777775

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.95  E-value=0.0034  Score=35.83  Aligned_cols=32  Identities=22%  Similarity=0.392  Sum_probs=28.5

Q ss_pred             ccceEEEEEccCCCcEEEEEecCCeEEEEEccc
Q psy4577          52 TAKISDFSWNPNEPWVICSVSEDNIMQILSVVC   84 (384)
Q Consensus        52 ~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~   84 (384)
                      ...|.+++|+|..+ +||.+..||.|.++.+..
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEECCC
Confidence            34699999999999 999999999999998843

>KOG2114|consensus

Probab=96.78  E-value=0.4  Score=45.07  Aligned_cols=99  Identities=17%  Similarity=0.249  Sum_probs=60.8

Q ss_pred             CCCceEEEeeCCC-----eEEEeecCCcCcccccCCCCCCCCeeEEEe--cc-----cccceEEEEEccCCCcEEEEEec
Q psy4577           6 HNETILASSGTDR-----RLHVWDLSKIGEEQSTEDAEDGPPELLFIH--GG-----HTAKISDFSWNPNEPWVICSVSE   73 (384)
Q Consensus         6 ~~~~~lat~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~g-----h~~~V~~l~~~~~~~~~l~s~s~   73 (384)
                      ++..+|++-+.|+     .|+||+++...        ++.+|+++..+  .+     ...++.+++.+.+-. .+|.|=.
T Consensus        75 ~~~~~L~sv~Ed~~~np~llkiw~lek~~--------~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~  145 (933)
T KOG2114|consen   75 NKQNFLFSVGEDEQGNPVLLKIWDLEKVD--------KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFT  145 (933)
T ss_pred             cCceEEEEEeecCCCCceEEEEecccccC--------CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEec
Confidence            3445777776665     48999998632        22225555221  12     256788999999877 7888888


Q ss_pred             CCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCcee
Q psy4577          74 DNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR  135 (384)
Q Consensus        74 D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  135 (384)
                      ||.|....=+-.+                  +...    +..-.|....+|+.++|..+++.
T Consensus       146 nG~V~~~~GDi~R------------------Drgs----r~~~~~~~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  146 NGLVICYKGDILR------------------DRGS----RQDYSHRGKEPITGLALRSDGKS  185 (933)
T ss_pred             CcEEEEEcCcchh------------------cccc----ceeeeccCCCCceeeEEecCCce
Confidence            9998886421100                  0000    22334555778888888877655

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.73  E-value=0.0074  Score=34.45  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=28.2

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT  275 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~  275 (384)
                      ....|..++|+|... ++|.++.+|.|.+|.++
T Consensus        10 l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence            345699999999995 99999999999999984

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.51  E-value=0.013  Score=55.24  Aligned_cols=89  Identities=15%  Similarity=0.058  Sum_probs=65.0

Q ss_pred             EEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC----CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCcc
Q psy4577         261 ATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG----HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRV  336 (384)
Q Consensus       261 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  336 (384)
                      ..|-.+..+..||.|..       + . .+..-..    .....+|++-+.+|  +||.||.+|.||+||--..+     
T Consensus       546 flGls~n~lfriDpR~~-------~-~-k~v~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~-----  609 (794)
T PF08553_consen  546 FLGLSDNSLFRIDPRLS-------G-N-KLVDSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKR-----  609 (794)
T ss_pred             EEEECCCceEEeccCCC-------C-C-ceeeccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchh-----
Confidence            34566788999999842       2 1 1111111    23467788888875  89999999999999954433     


Q ss_pred             ccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         337 IDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       337 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                        ....|.+-..+|.+|+-+.||+.+.++|.
T Consensus       610 --AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  610 --AKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             --hhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence              56667778899999999999999998884

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2066|consensus

Probab=96.48  E-value=0.029  Score=51.72  Aligned_cols=85  Identities=7%  Similarity=0.065  Sum_probs=57.3

Q ss_pred             CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCC----CCCeEEEeeCCCcEEEEecCCC
Q psy4577         255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPS----LNGYLLSASDDHTICLWDINAT  330 (384)
Q Consensus       255 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~----~~~~l~s~s~Dg~i~iwd~~~~  330 (384)
                      .|+ +++|||.||+|.|-.+-        +..  ...++. ...++.+++++|+    .++.+++||.-| +.++.-+-.
T Consensus        82 ~Ge-y~asCS~DGkv~I~sl~--------~~~--~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl  148 (846)
T KOG2066|consen   82 EGE-YVASCSDDGKVVIGSLF--------TDD--EITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL  148 (846)
T ss_pred             CCc-eEEEecCCCcEEEeecc--------CCc--cceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh
Confidence            475 99999999999998764        221  222222 3458999999998    235899999988 888876532


Q ss_pred             CCCCccccceeeeeccCCcEeEEEEec
Q psy4577         331 PKENRVIDAKTIFTGHTAVVELELIER  357 (384)
Q Consensus       331 ~~~~~~~~~~~~~~~h~~~v~~~~~sp  357 (384)
                      ...     .-..+..-.++|.++.|.-
T Consensus       149 gnk-----~~v~l~~~eG~I~~i~W~g  170 (846)
T KOG2066|consen  149 GNK-----DSVVLSEGEGPIHSIKWRG  170 (846)
T ss_pred             cCc-----cceeeecCccceEEEEecC
Confidence            210     1113445567899888853

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.33  E-value=0.46  Score=38.96  Aligned_cols=60  Identities=10%  Similarity=0.147  Sum_probs=40.9

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEe-CCCCCCeEEEee
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSW-NPSLNGYLLSAS  317 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~-s~~~~~~l~s~s  317 (384)
                      ..-.+++..+| ++.++.-..+.|.+++.         .+.......+.  ...+++++| -++...+++|.+
T Consensus       185 ~pDG~~vD~~G-~l~va~~~~~~I~~~~p---------~G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  185 YPDGLAVDSDG-NLWVADWGGGRIVVFDP---------DGKLLREIELP--VPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EEEEEEEBTTS--EEEEEETTTEEEEEET---------TSCEEEEEE-S--SSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCCcceEcCCC-CEEEEEcCCCEEEEECC---------CccEEEEEcCC--CCCEEEEEEECCCCCEEEEEeC
Confidence            47789999999 58887778899999997         45443333443  347999999 466534555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.25  E-value=0.72  Score=40.27  Aligned_cols=78  Identities=21%  Similarity=0.284  Sum_probs=39.2

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-----cc-ccceEEEEEccCCCcEEEEEecCC
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-----GH-TAKISDFSWNPNEPWVICSVSEDN   75 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----gh-~~~V~~l~~~~~~~~~l~s~s~D~   75 (384)
                      .|||+|. .+|-. .++.|.+++.......+-..+.   ...+..-..     .- -+.-..+-||||+++++..--++.
T Consensus        49 ~~sP~g~-~~~~v-~~~nly~~~~~~~~~~~lT~dg---~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~  123 (353)
T PF00930_consen   49 KWSPDGK-YIAFV-RDNNLYLRDLATGQETQLTTDG---EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDER  123 (353)
T ss_dssp             EE-SSST-EEEEE-ETTEEEEESSTTSEEEESES-----TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred             eeecCCC-eeEEE-ecCceEEEECCCCCeEEecccc---ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCc
Confidence            6899997 46655 3678999987653211111111   111111000     00 112346889999996655556668


Q ss_pred             eEEEEEccc
Q psy4577          76 IMQILSVVC   84 (384)
Q Consensus        76 ~i~vwd~~~   84 (384)
                      .|+.+.+..
T Consensus       124 ~v~~~~~~~  132 (353)
T PF00930_consen  124 EVPEYPLPD  132 (353)
T ss_dssp             TS-EEEEEE
T ss_pred             CCceEEeec
Confidence            888877643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.97  E-value=0.23  Score=43.73  Aligned_cols=123  Identities=13%  Similarity=0.141  Sum_probs=73.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC-------------------------------CCC--CCccceee
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP-------------------------------DPN--GECHPDLR  292 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~-------------------------------~~~--~~~~~~~~  292 (384)
                      .|+.+.|++... -|+.|...|.|.||.........                               ++.  ....|...
T Consensus         3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            478899999864 67888899999988665322110                               000  11334444


Q ss_pred             ecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeee--ec------cCCcEeEEEEe---cCCCc
Q psy4577         293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF--TG------HTAVVELELIE---RLTKK  361 (384)
Q Consensus       293 ~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~--~~------h~~~v~~~~~s---p~~~~  361 (384)
                      +....++|++++.|.-|  ++|.|..+|++.|.|+|...       .+..-  ..      ....|+++.|+   ..+..
T Consensus        82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPa-------vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPA-------VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTE-------EEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCe-------EEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence            55567899999998664  99999999999999998765       33321  11      33468899998   44455


Q ss_pred             ccccccccccceeeEEE
Q psy4577         362 ADPVCTLEKAKKKKEVV  378 (384)
Q Consensus       362 ~~~~c~~~~~~~~~~~~  378 (384)
                      -.+.|.+.....+.-++
T Consensus       153 ySSi~L~vGTn~G~v~~  169 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLT  169 (395)
T ss_dssp             SEEEEEEEEETTSEEEE
T ss_pred             ccceEEEEEeCCCCEEE
Confidence            55666666665555443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395|consensus

Probab=95.93  E-value=0.033  Score=48.92  Aligned_cols=105  Identities=17%  Similarity=0.160  Sum_probs=72.8

Q ss_pred             CceEEEEEcCCCCc-------EEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC----CceEEEEeCCCCCCeE
Q psy4577         245 GEVNRARYMPQNPC-------VIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ----KEGYGLSWNPSLNGYL  313 (384)
Q Consensus       245 ~~v~~v~~~p~~~~-------~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~----~~i~~~~~s~~~~~~l  313 (384)
                      ..|+-+.+.|+++.       .| .|-.|..|.-||.|.+..        ..+....+|.    ....|.+-..+  .++
T Consensus       376 ~di~mv~~t~d~K~~Ql~~e~Tl-vGLs~n~vfriDpRv~~~--------~kl~~~q~kqy~~k~nFsc~aTT~s--G~I  444 (644)
T KOG2395|consen  376 DDINMVDITPDFKFAQLTSEQTL-VGLSDNSVFRIDPRVQGK--------NKLAVVQSKQYSTKNNFSCFATTES--GYI  444 (644)
T ss_pred             CCcceeeccCCcchhcccccccE-EeecCCceEEecccccCc--------ceeeeeeccccccccccceeeecCC--ceE
Confidence            34777888886521       23 344577888899874321        1222333332    23455555555  489


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         314 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      |.||.+|.|++||--.-+       ....+.+...+|..|.-+.+|+.+.++|.
T Consensus       445 vvgS~~GdIRLYdri~~~-------AKTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  445 VVGSLKGDIRLYDRIGRR-------AKTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             EEeecCCcEEeehhhhhh-------hhhcccccCCceeeEEeeccCcEEEEecc
Confidence            999999999999985444       56667888899999999999999999884

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.88  E-value=0.77  Score=37.46  Aligned_cols=67  Identities=15%  Similarity=0.213  Sum_probs=45.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEe--cccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~   78 (384)
                      |+|+|+...|+|+....+.|...+.+.               +++...  .| .+..-.|++..++. ++++.-.++.+.
T Consensus        27 LTy~pd~~tLfaV~d~~~~i~els~~G---------------~vlr~i~l~g-~~D~EgI~y~g~~~-~vl~~Er~~~L~   89 (248)
T PF06977_consen   27 LTYNPDTGTLFAVQDEPGEIYELSLDG---------------KVLRRIPLDG-FGDYEGITYLGNGR-YVLSEERDQRLY   89 (248)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT-----------------EEEEEE-SS--SSEEEEEE-STTE-EEEEETTTTEEE
T ss_pred             cEEcCCCCeEEEEECCCCEEEEEcCCC---------------CEEEEEeCCC-CCCceeEEEECCCE-EEEEEcCCCcEE
Confidence            468998777888888888888777653               444433  34 34678889987777 555555689999


Q ss_pred             EEEccc
Q psy4577          79 ILSVVC   84 (384)
Q Consensus        79 vwd~~~   84 (384)
                      +.++..
T Consensus        90 ~~~~~~   95 (248)
T PF06977_consen   90 IFTIDD   95 (248)
T ss_dssp             EEEE--
T ss_pred             EEEEec
Confidence            988854

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621|consensus

Probab=95.86  E-value=0.033  Score=50.61  Aligned_cols=107  Identities=9%  Similarity=0.086  Sum_probs=67.9

Q ss_pred             CCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEccc
Q psy4577           5 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVC   84 (384)
Q Consensus         5 p~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~   84 (384)
                      -.++ +|+.|+.-|.+.+|+.....             -......+-.+.+..+..+++.. ++|.|+..|.|.++.++.
T Consensus        43 st~~-~l~~GsS~G~lyl~~R~~~~-------------~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   43 ATEE-YLAMGSSAGSVYLYNRHTGE-------------MRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             cCCc-eEEEecccceEEEEecCchh-------------hhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhc
Confidence            3454 79999999999999976521             12222233344566667788777 888889999999988765


Q ss_pred             CCCccchhheeeeeeeEEEeccCCcccccceeee-eeccCeeEEEEecCceeee----cceeeeeccc
Q psy4577          85 VEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTH-ALEWPSLTAQWLPDVTRVI----NEEYKIWKKN  147 (384)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~  147 (384)
                      ...                    ....+ ....| .+...|++++|++++..++    .|+|..-.++
T Consensus       108 ~~p--------------------~~~~~-~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~  154 (726)
T KOG3621|consen  108 ELP--------------------RDLDY-VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD  154 (726)
T ss_pred             cCC--------------------Cccee-eccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence            311                    11000 00111 1266799999999998887    4555544433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.86  E-value=0.026  Score=50.02  Aligned_cols=105  Identities=10%  Similarity=0.066  Sum_probs=61.3

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      +.-..-+|+|+|+.++.+...||...||-+..       .+..  +..+..-.+.-..=.|+|||..++++.+..|.-.|
T Consensus       238 g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl-------~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I  308 (425)
T COG0823         238 GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL-------DGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQI  308 (425)
T ss_pred             CccCCccCCCCCCEEEEEECCCCCccEEEEcC-------CCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcce
Confidence            33445789999998888888888866665532       1221  22233333333466899999655566666676555


Q ss_pred             Ee--cCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         325 WD--INATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       325 wd--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      |-  .+...       . ..+......=..-.|+|||+.++-.-
T Consensus       309 ~~~~~~g~~-------~-~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         309 YLYDLEGSQ-------V-TRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             EEECCCCCc-------e-eEeeccCCCCcCccCCCCCCEEEEEe
Confidence            54  44443       1 22222222222678999998766544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.78  E-value=0.36  Score=43.19  Aligned_cols=92  Identities=13%  Similarity=0.029  Sum_probs=41.3

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEE-ecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         247 VNRARYMPQNPCVIATKTPSSDVLVF-DYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      -..++|.+.+  .+|+-..+.+|.|+ ++.           ......+.-. ..+..|-.   | .+|+..+.+ .|.+|
T Consensus        71 g~~~vw~~~n--~yAv~~~~~~I~I~kn~~-----------~~~~k~i~~~-~~~~~If~---G-~LL~~~~~~-~i~~y  131 (443)
T PF04053_consen   71 GLSFVWSSRN--RYAVLESSSTIKIYKNFK-----------NEVVKSIKLP-FSVEKIFG---G-NLLGVKSSD-FICFY  131 (443)
T ss_dssp             -SEEEE-TSS--EEEEE-TTS-EEEEETTE-----------E-TT-----S-S-EEEEE----S-SSEEEEETT-EEEEE
T ss_pred             eeEEEEecCc--cEEEEECCCeEEEEEcCc-----------cccceEEcCC-cccceEEc---C-cEEEEECCC-CEEEE
Confidence            4556777744  35555667778775 221           1111111111 11222222   5 455555443 78888


Q ss_pred             ecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         326 DINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       326 d~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      |+.+++       .+..+...  +|..|.|+++++.++-.|
T Consensus       132 Dw~~~~-------~i~~i~v~--~vk~V~Ws~~g~~val~t  163 (443)
T PF04053_consen  132 DWETGK-------LIRRIDVS--AVKYVIWSDDGELVALVT  163 (443)
T ss_dssp             -TTT---------EEEEESS---E-EEEEE-TTSSEEEEE-
T ss_pred             EhhHcc-------eeeEEecC--CCcEEEEECCCCEEEEEe
Confidence            888777       66666522  377788888877655443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.73  E-value=0.62  Score=41.06  Aligned_cols=108  Identities=11%  Similarity=0.099  Sum_probs=56.9

Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC------CCCceEEEEeCC---
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG------HQKEGYGLSWNP---  307 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------h~~~i~~~~~s~---  307 (384)
                      ........++|++++.|.-|  ++|.|..+|.+.|.|+|.        ........+..      ....|+++.|+.   
T Consensus        79 ~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RG--------PavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~  148 (395)
T PF08596_consen   79 LTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRG--------PAVIYNENIRESFLSKSSSSYVTSIEFSVMTL  148 (395)
T ss_dssp             EEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTT--------TEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred             hhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCC--------CeEEeeccccccccccccccCeeEEEEEEEec
Confidence            33334458999999998767  999999999999999973        11111112222      233678888862   


Q ss_pred             --CC--CCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEE
Q psy4577         308 --SL--NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELEL  354 (384)
Q Consensus       308 --~~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~  354 (384)
                        |+  +-+|+.|...|.+.+|.+.-................+.++|..+.
T Consensus       149 ~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~  199 (395)
T PF08596_consen  149 GGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII  199 (395)
T ss_dssp             TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE
T ss_pred             CCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE
Confidence              22  127888888899999988521111111112222224556666655

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1832|consensus

Probab=95.62  E-value=0.02  Score=53.44  Aligned_cols=73  Identities=10%  Similarity=0.011  Sum_probs=63.0

Q ss_pred             cceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         288 HPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       288 ~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      .+..+++.|...-+|++|+-+. +.|+.|+..|.|+++++.++.       ......+|.++|+.+.=+.+|..+.+...
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~-------~e~s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGS-------MEESVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred             ccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCcc-------ccccccccccccccccccCCcceeeeecc
Confidence            3455677888899999999986 799999999999999999998       77778899999999999999987766544


Q ss_pred             c
Q psy4577         368 L  368 (384)
Q Consensus       368 ~  368 (384)
                      |
T Consensus      1164 ~ 1164 (1516)
T KOG1832|consen 1164 S 1164 (1516)
T ss_pred             c
Confidence            4

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.52  E-value=0.35  Score=39.43  Aligned_cols=113  Identities=13%  Similarity=0.175  Sum_probs=68.0

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      +-...+.+++|+|+...++++....+.|...+.         ++.......+.+. +-.-.|++..++ .++++--.++.
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~---------~G~vlr~i~l~g~-~D~EgI~y~g~~-~~vl~~Er~~~   87 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL---------DGKVLRRIPLDGF-GDYEGITYLGNG-RYVLSEERDQR   87 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET---------T--EEEEEE-SS--SSEEEEEE-STT-EEEEEETTTTE
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC---------CCCEEEEEeCCCC-CCceeEEEECCC-EEEEEEcCCCc
Confidence            344569999999987678888888888888886         4554444456553 357788888776 56666656899


Q ss_pred             EEEEecCCCCCCCccccceeeee-----ccCCcEeEEEEecCCCcccccc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFT-----GHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      +.+.++....+.-.. .....+.     .++..+-.++|.|.+..+..++
T Consensus        88 L~~~~~~~~~~~~~~-~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k  136 (248)
T PF06977_consen   88 LYIFTIDDDTTSLDR-ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK  136 (248)
T ss_dssp             EEEEEE----TT--E-EEEEEEE---S---SS--EEEEEETTTTEEEEEE
T ss_pred             EEEEEEeccccccch-hhceEEecccccCCCcceEEEEEcCCCCEEEEEe
Confidence            999999654321110 0112221     2456689999999988777664

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.21  E-value=0.09  Score=29.08  Aligned_cols=33  Identities=12%  Similarity=0.110  Sum_probs=26.5

Q ss_pred             CceEEEEeCCCCC--CeEEEeeCCCcEEEEecCCC
Q psy4577         298 KEGYGLSWNPSLN--GYLLSASDDHTICLWDINAT  330 (384)
Q Consensus       298 ~~i~~~~~s~~~~--~~l~s~s~Dg~i~iwd~~~~  330 (384)
                      +.|.+++|||...  .+|+-+-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4689999998642  37887777899999999964

It contains a characteristic DLL sequence motif.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.08  E-value=0.97  Score=40.95  Aligned_cols=72  Identities=7%  Similarity=0.129  Sum_probs=46.0

Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecC
Q psy4577         249 RARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN  328 (384)
Q Consensus       249 ~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~  328 (384)
                      +..|+|... +|+.-.....-.+++.+.        ........+ ...+.|.|.+|.+||.+++++.+..=.-+|||-.
T Consensus       117 GCVWHPk~~-iL~VLT~~dvSV~~sV~~--------d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  117 GCVWHPKKA-ILTVLTARDVSVLPSVHC--------DSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cccccCCCc-eEEEEecCceeEeeeeee--------CCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            567999885 666655444444566652        111122233 3456799999999997777666666667888865


Q ss_pred             CC
Q psy4577         329 AT  330 (384)
Q Consensus       329 ~~  330 (384)
                      ..
T Consensus       187 qK  188 (671)
T PF15390_consen  187 QK  188 (671)
T ss_pred             hh
Confidence            43

>KOG0882|consensus

Probab=94.97  E-value=0.03  Score=48.04  Aligned_cols=79  Identities=13%  Similarity=0.083  Sum_probs=59.9

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC-CC
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD-DH  320 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~-Dg  320 (384)
                      -|.+.|+-+...-.  .++.+++.||.++.|--..       ....+-+..+..|-+.|.+++.+.++ .++.|.+. |.
T Consensus         7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~-------isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dh   76 (558)
T KOG0882|consen    7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSR-------ISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDH   76 (558)
T ss_pred             cccceeeeEeeehh--heEEeeecchhhhhcCCCC-------ccceeehhhhHHHHHHHHhhhccccc-eeEeeccCccc
Confidence            47777777654433  4999999999999998541       11223345677788899999999998 79999777 99


Q ss_pred             cEEEEecCCC
Q psy4577         321 TICLWDINAT  330 (384)
Q Consensus       321 ~i~iwd~~~~  330 (384)
                      .++++|+.+.
T Consensus        77 s~KvfDvEn~   86 (558)
T KOG0882|consen   77 SVKVFDVENF   86 (558)
T ss_pred             ceeEEEeecc
Confidence            9999988764

>KOG2444|consensus

Probab=94.94  E-value=0.055  Score=42.30  Aligned_cols=60  Identities=13%  Similarity=0.169  Sum_probs=37.2

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccc-cceEEEEEccCCCcEEEEE--ecCCeEEEEEccc
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFSWNPNEPWVICSV--SEDNIMQILSVVC   84 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~~l~s~--s~D~~i~vwd~~~   84 (384)
                      +.++++.||.|+.|++..              .+.+-...+|+ .++..+..+..+. +++.+  |.|..++.|++..
T Consensus       116 ~~c~~~~dg~ir~~n~~p--------------~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  116 LGCVGAQDGRIRACNIKP--------------NKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEeccCCceeeecccc--------------CceeeeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence            889999999999999875              23344444555 4444444444444 44555  5566666666543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.91  E-value=2.3  Score=36.90  Aligned_cols=28  Identities=11%  Similarity=0.108  Sum_probs=17.2

Q ss_pred             EEEEeCCCCCCeEEEeeCCCcEEEEecC
Q psy4577         301 YGLSWNPSLNGYLLSASDDHTICLWDIN  328 (384)
Q Consensus       301 ~~~~~s~~~~~~l~s~s~Dg~i~iwd~~  328 (384)
                      -...|+|||..+|.++...|...||=++
T Consensus       354 Php~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  354 PHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             ---EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             CCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            3578999996677788888888877543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.88  E-value=0.12  Score=28.60  Aligned_cols=31  Identities=19%  Similarity=0.304  Sum_probs=26.0

Q ss_pred             CceEEEEEcCCCC--cEEEEEeCCCcEEEEecC
Q psy4577         245 GEVNRARYMPQNP--CVIATKTPSSDVLVFDYT  275 (384)
Q Consensus       245 ~~v~~v~~~p~~~--~~l~s~s~dg~i~iwd~~  275 (384)
                      +.|+++.|+|...  .+|+-+-.-|.|.|+|++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            4689999998553  588888888999999997

It contains a characteristic DLL sequence motif.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.74  E-value=0.14  Score=48.59  Aligned_cols=72  Identities=15%  Similarity=0.195  Sum_probs=54.0

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      ......|++-..+|  .+|.|+.+|.||+||.         .+. .....+.+-..+|.+|..+.|| +||++.+ +..+
T Consensus       576 ~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~---------~g~-~AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyL  641 (794)
T PF08553_consen  576 SKNNFSCFATTEDG--YIAVGSNKGDIRLYDR---------LGK-RAKTALPGLGDPIIGIDVTADG-KWILATC-KTYL  641 (794)
T ss_pred             cCCCceEEEecCCc--eEEEEeCCCcEEeecc---------cch-hhhhcCCCCCCCeeEEEecCCC-cEEEEee-cceE
Confidence            44567788887777  6899999999999995         332 2344677778899999999999 5554443 3578


Q ss_pred             EEEecC
Q psy4577         323 CLWDIN  328 (384)
Q Consensus       323 ~iwd~~  328 (384)
                      .|.+..
T Consensus       642 lLi~t~  647 (794)
T PF08553_consen  642 LLIDTL  647 (794)
T ss_pred             EEEEEe
Confidence            888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4499|consensus

Probab=94.73  E-value=0.5  Score=37.34  Aligned_cols=101  Identities=12%  Similarity=0.033  Sum_probs=65.6

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC----CCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG----HQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      +--+.++|+.+-+.+..+-+.+-.|.-||...+.-..   .....+..++.    ....--.++..-+| .+.+++=.-+
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~---snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~  233 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL---SNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGG  233 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccc---cCcceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCc
Confidence            3446788888777777777888888888864322110   01111222221    11112234445677 6777777789


Q ss_pred             cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577         321 TICLWDINATPKENRVIDAKTIFTGHTAVVELELIE  356 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  356 (384)
                      +|...|..+++       .+.++.-....|++++|-
T Consensus       234 ~V~~~dp~tGK-------~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  234 TVQKVDPTTGK-------ILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             EEEEECCCCCc-------EEEEEEcCCCceEEEEec
Confidence            99999999999       888888778889999995

>KOG1832|consensus

Probab=94.66  E-value=0.054  Score=50.82  Aligned_cols=79  Identities=14%  Similarity=0.154  Sum_probs=60.1

Q ss_pred             EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      +..|....+|++|+-.. +.|+.|+..|.|++|+..        +|..+  ....+|..+|+-+.-+.+|+..|.+++..
T Consensus      1097 frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~--------sG~~e--~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVS--------SGSME--ESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred             hhccccceeeEEeecCC-ceEEeeeccceEEEEEcc--------Ccccc--ccccccccccccccccCCcceeeeecccc
Confidence            34577889999999977 599999999999999987        45433  36788999999999999986455554444


Q ss_pred             C-cEEEEecCC
Q psy4577         320 H-TICLWDINA  329 (384)
Q Consensus       320 g-~i~iwd~~~  329 (384)
                      . -..+|+..+
T Consensus      1166 ~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1166 SPLSALWDASS 1176 (1516)
T ss_pred             CchHHHhcccc
Confidence            3 456677654

>KOG2079|consensus

Probab=94.20  E-value=0.25  Score=47.63  Aligned_cols=71  Identities=13%  Similarity=0.199  Sum_probs=50.3

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceE---EEEeCCCCCCeEEEeeCC
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGY---GLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~---~~~~s~~~~~~l~s~s~D  319 (384)
                      -.++|++++|+.+|. +++.|-.+|.|.+||+.        .+  .++..+..|..+.+   .+.+..++ ..+.++..-
T Consensus       129 v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~--------~~--k~l~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~  196 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMH--------RA--KILKVITEHGAPVTGVIFVGRTSQN-SKLLTSDTG  196 (1206)
T ss_pred             cCCcceeeEecCCCc-eeccccCCCcEEEEEcc--------CC--cceeeeeecCCccceEEEEEEeCCC-cEEEEccCC
Confidence            357899999999995 89999999999999985        22  23444555544444   44555565 478888877


Q ss_pred             CcEEEEec
Q psy4577         320 HTICLWDI  327 (384)
Q Consensus       320 g~i~iwd~  327 (384)
                      |.  +|..
T Consensus       197 Gs--f~~l  202 (1206)
T KOG2079|consen  197 GS--FWKL  202 (1206)
T ss_pred             Cc--eEEE
Confidence            76  5654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.04  E-value=4.4  Score=36.48  Aligned_cols=87  Identities=14%  Similarity=0.143  Sum_probs=44.1

Q ss_pred             CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCC----C
Q psy4577         256 NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINAT----P  331 (384)
Q Consensus       256 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~----~  331 (384)
                      |. +|+..+. +.|.+||..        ++  ..+..+.-  .+|..+.|+++| .++|-.+.| ++.|++.+..    .
T Consensus       117 G~-LL~~~~~-~~i~~yDw~--------~~--~~i~~i~v--~~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~~~  180 (443)
T PF04053_consen  117 GN-LLGVKSS-DFICFYDWE--------TG--KLIRRIDV--SAVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVAAI  180 (443)
T ss_dssp             SS-SEEEEET-TEEEEE-TT--------T----EEEEESS---E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHHB
T ss_pred             Cc-EEEEECC-CCEEEEEhh--------Hc--ceeeEEec--CCCcEEEEECCC-CEEEEEeCC-eEEEEEecchhcccc
Confidence            64 6666554 479999985        23  23434442  248999999998 577777654 8888876544    0


Q ss_pred             CCCccccceeeeeccCCcEeEEEEecC
Q psy4577         332 KENRVIDAKTIFTGHTAVVELELIERL  358 (384)
Q Consensus       332 ~~~~~~~~~~~~~~h~~~v~~~~~sp~  358 (384)
                      .+.-....+..+..-...|.+.+|--+
T Consensus       181 ~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  181 PEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             TTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             cccCchhceEEEEEecceeEEEEEEcC
Confidence            000000123333333567888888754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.96  E-value=5.6  Score=37.39  Aligned_cols=64  Identities=9%  Similarity=0.091  Sum_probs=34.9

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      .+..+.|.+++. ++ .+..++.-.+|.+..       .+.......-.....++..|+-++.  .++ ....+|.
T Consensus       498 ~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~v-------DG~~~~~~~~~n~~~~v~~vaa~~~--~iy-v~~~~g~  561 (591)
T PRK13616        498 TAVSLDWRTGDS-LV-VGRSDPEHPVWYVNL-------DGSNSDALPSRNLSAPVVAVAASPS--TVY-VTDARAV  561 (591)
T ss_pred             ccccceEecCCE-EE-EEecCCCCceEEEec-------CCccccccCCCCccCceEEEecCCc--eEE-EEcCCce
Confidence            357789999885 54 445555556666543       3332221111113567888888874  233 3455553

>PRK02888 nitrous-oxide reductase; Validated

Probab=93.94  E-value=0.75  Score=42.46  Aligned_cols=79  Identities=10%  Similarity=0.215  Sum_probs=49.6

Q ss_pred             cceEEEEEccCCCcEEEEEecCCeEEEEEcccCCC-ccchhhe-eeeeeeEEEeccCCcccccceeeeeeccCeeEEEEe
Q psy4577          53 AKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEP-FDDAVEE-RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWL  130 (384)
Q Consensus        53 ~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  130 (384)
                      .....++++|||+++++++..+.+|.|.|+...+. +...... ..+-.++.+                 .-.-...+|.
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-----------------GlGPLHTaFD  383 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-----------------GLGPLHTAFD  383 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-----------------CCCcceEEEC
Confidence            35778999999998888888999999999977532 1111000 000011110                 1112357888


Q ss_pred             cCcee----eecceeeeecccc
Q psy4577         131 PDVTR----VINEEYKIWKKNT  148 (384)
Q Consensus       131 ~~~~~----~~d~~v~~w~~~~  148 (384)
                      ++|..    ++|.+|..|++..
T Consensus       384 g~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        384 GRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCCEEEeEeecceeEEEehHH
Confidence            88743    3399999999865

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.93  E-value=0.39  Score=44.79  Aligned_cols=100  Identities=16%  Similarity=0.145  Sum_probs=57.3

Q ss_pred             CceEEEEEcCCCCcEEEEEe-----CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         245 GEVNRARYMPQNPCVIATKT-----PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      ..+...+++|+|+...++..     .|..-.||-...       .+...++  ..+.  ..+.-.|+|+| ..|++.+..
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-------gg~~~~l--t~g~--~~t~PsWspDG-~~lw~v~dg  417 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-------GGVAVQV--LEGH--SLTRPSWSLDA-DAVWVVVDG  417 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-------CCcceee--ecCC--CCCCceECCCC-CceEEEecC
Confidence            45778899999975544442     244444443321       2222222  2332  37788999998 577666432


Q ss_pred             ------------CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         320 ------------HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       320 ------------g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                                  +.+.+.++..+.       ...   ...+.|..+.|||||..++-+.
T Consensus       418 ~~~~~v~~~~~~gql~~~~vd~ge-------~~~---~~~g~Issl~wSpDG~RiA~i~  466 (591)
T PRK13616        418 NTVVRVIRDPATGQLARTPVDASA-------VAS---RVPGPISELQLSRDGVRAAMII  466 (591)
T ss_pred             cceEEEeccCCCceEEEEeccCch-------hhh---ccCCCcCeEEECCCCCEEEEEE
Confidence                        233333443332       111   2346799999999999776543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.85  E-value=0.7  Score=35.51  Aligned_cols=31  Identities=6%  Similarity=0.348  Sum_probs=26.1

Q ss_pred             ceEEEEEccCC-----CcEEEEEecCCeEEEEEccc
Q psy4577          54 KISDFSWNPNE-----PWVICSVSEDNIMQILSVVC   84 (384)
Q Consensus        54 ~V~~l~~~~~~-----~~~l~s~s~D~~i~vwd~~~   84 (384)
                      .|.+++|||.|     +.+||....++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            79999999954     45899999999999997754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.80  E-value=4.4  Score=35.73  Aligned_cols=32  Identities=9%  Similarity=0.068  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTK  276 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~  276 (384)
                      .-|+.|..|.|.+.+.+++=..|.||.||+..
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence            45789999999987788888899999999963

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.30  E-value=5.8  Score=35.53  Aligned_cols=84  Identities=14%  Similarity=0.167  Sum_probs=42.7

Q ss_pred             EEeecCCceEEEEEcCCCCcEEEEEeCCCc--EEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         239 IKINHEGEVNRARYMPQNPCVIATKTPSSD--VLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       239 ~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ....+...+.-..+...+..+++.-..++.  |+++++.        .+.......+.. .+.|..+...++.+.++++.
T Consensus       319 ~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~--------~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~  389 (414)
T PF02897_consen  319 VLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD--------DGKESREIPLPE-AGSVSGVSGDFDSDELRFSY  389 (414)
T ss_dssp             EEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT---------TEEEEEEESSS-SSEEEEEES-TT-SEEEEEE
T ss_pred             EEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC--------CCcEEeeecCCc-ceEEeccCCCCCCCEEEEEE
Confidence            344555533323333344456776666654  6677763        022222222222 34466777666654555555


Q ss_pred             eCC---CcEEEEecCCCC
Q psy4577         317 SDD---HTICLWDINATP  331 (384)
Q Consensus       317 s~D---g~i~iwd~~~~~  331 (384)
                      +.-   ++++.||+.+++
T Consensus       390 ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  390 SSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EETTEEEEEEEEETTTTC
T ss_pred             eCCCCCCEEEEEECCCCC
Confidence            543   688888998875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.11  E-value=1.3  Score=41.23  Aligned_cols=106  Identities=10%  Similarity=0.094  Sum_probs=68.1

Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeC--CCCCCeEEEeeCCCcEEEEe
Q psy4577         249 RARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWN--PSLNGYLLSASDDHTICLWD  326 (384)
Q Consensus       249 ~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--~~~~~~l~s~s~Dg~i~iwd  326 (384)
                      -+.-+.-++ ..+.-+....+.|||.+        .+..+....+ ...+.|.++.|.  |++ +.+.+.|....|.++-
T Consensus        34 li~gss~~k-~a~V~~~~~~LtIWD~~--------~~~lE~~~~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   34 LISGSSIKK-IAVVDSSRSELTIWDTR--------SGVLEYEESF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYT  102 (631)
T ss_pred             eEeecccCc-EEEEECCCCEEEEEEcC--------CcEEEEeeee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEE
Confidence            344445554 44454556679999997        4443333344 346789999986  688 6889999999999995


Q ss_pred             cCCC--CCCCccccceeee--eccC-CcEeEEEEecCCCccccc
Q psy4577         327 INAT--PKENRVIDAKTIF--TGHT-AVVELELIERLTKKADPV  365 (384)
Q Consensus       327 ~~~~--~~~~~~~~~~~~~--~~h~-~~v~~~~~sp~~~~~~~~  365 (384)
                      -...  ...++...++..+  ..|+ .+|.+..|-++|..+.+.
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s  146 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS  146 (631)
T ss_pred             ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe
Confidence            4321  1112333344444  3455 689999999999866544

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2444|consensus

Probab=93.00  E-value=0.48  Score=37.27  Aligned_cols=87  Identities=13%  Similarity=0.043  Sum_probs=52.2

Q ss_pred             cEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEE-EeCCCCCCeEEEeeCCCcEEEEecCCCCCCCcc
Q psy4577         258 CVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGL-SWNPSLNGYLLSASDDHTICLWDINATPKENRV  336 (384)
Q Consensus       258 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~-~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  336 (384)
                      .-+++|+.+|.|.+|.....       +...-  ....-...|.++ .--.++ .+..+++.||.|+.|++.-.+     
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~-------g~~~d--~~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k-----  135 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLE-------GAHSD--RVCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNK-----  135 (238)
T ss_pred             ceEEeecccceEEEecCCcc-------chHHH--hhhcccccceecccccccc-ceeEEeccCCceeeeccccCc-----
Confidence            36888999999999998521       11111  111111223222 222343 488999999999999999887     


Q ss_pred             ccceeeeeccC-CcEeEEEEecCCCc
Q psy4577         337 IDAKTIFTGHT-AVVELELIERLTKK  361 (384)
Q Consensus       337 ~~~~~~~~~h~-~~v~~~~~sp~~~~  361 (384)
                        .+....+|. .++..+.-+-.+..
T Consensus       136 --~~g~~g~h~~~~~e~~ivv~sd~~  159 (238)
T KOG2444|consen  136 --VLGYVGQHNFESGEELIVVGSDEF  159 (238)
T ss_pred             --eeeeeccccCCCcceeEEecCCce
Confidence              555555566 45555544444443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=92.95  E-value=6.2  Score=34.90  Aligned_cols=69  Identities=14%  Similarity=0.226  Sum_probs=45.3

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEe--cCCeEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS--EDNIMQI   79 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s--~D~~i~v   79 (384)
                      +.++.+....++...++.|.+.|.....             ..-....|.  .-..++|+|+++.+.++-.  .++++.+
T Consensus        80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~-------------~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsv  144 (381)
T COG3391          80 AVNPAGNKVYVTTGDSNTVSVIDTATNT-------------VLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSV  144 (381)
T ss_pred             eeCCCCCeEEEecCCCCeEEEEcCcccc-------------eeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEE
Confidence            4567776666777667899999966521             222222233  5678999999986665555  3688888


Q ss_pred             EEcccC
Q psy4577          80 LSVVCV   85 (384)
Q Consensus        80 wd~~~~   85 (384)
                      .|..+.
T Consensus       145 id~~t~  150 (381)
T COG3391         145 IDAATN  150 (381)
T ss_pred             EeCCCC
Confidence            777664

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.81  E-value=6.9  Score=35.06  Aligned_cols=32  Identities=16%  Similarity=0.345  Sum_probs=23.8

Q ss_pred             ceEEEEEccCCCcEEEEEecCC----eEEEEEcccC
Q psy4577          54 KISDFSWNPNEPWVICSVSEDN----IMQILSVVCV   85 (384)
Q Consensus        54 ~V~~l~~~~~~~~~l~s~s~D~----~i~vwd~~~~   85 (384)
                      .+...+++|++++++++.+..|    ++++.|+.++
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg  160 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG  160 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC
Confidence            3446789999996666655544    5999999886

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2395|consensus

Probab=92.73  E-value=0.15  Score=45.01  Aligned_cols=61  Identities=7%  Similarity=0.193  Sum_probs=45.3

Q ss_pred             CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEc
Q psy4577           6 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSV   82 (384)
Q Consensus         6 ~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~   82 (384)
                      .+..++|+||.+|-|+|||...              ......++|-..+|..|..+.+|+++|+||  +..+.+-++
T Consensus       439 T~sG~IvvgS~~GdIRLYdri~--------------~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t  499 (644)
T KOG2395|consen  439 TESGYIVVGSLKGDIRLYDRIG--------------RRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDT  499 (644)
T ss_pred             cCCceEEEeecCCcEEeehhhh--------------hhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEE
Confidence            3445799999999999999743              233344567778999999999999777654  456666555

>KOG1916|consensus

Probab=92.47  E-value=0.32  Score=46.11  Aligned_cols=96  Identities=11%  Similarity=0.131  Sum_probs=60.7

Q ss_pred             EEEEeecCCceEEEEEcCC--CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEE----------
Q psy4577         237 IEIKINHEGEVNRARYMPQ--NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLS----------  304 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~----------  304 (384)
                      +.........+.-|.|.|-  ++.++..+-.++.|++..++        ...   ...+.+|..+++.++          
T Consensus       173 v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~--------ra~---~~l~rsHs~~~~d~a~~~~g~~~l~  241 (1283)
T KOG1916|consen  173 VTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNIN--------RAL---RSLFRSHSQRVTDMAFFAEGVLKLA  241 (1283)
T ss_pred             EeecCcCCCCcceeeecccccccceeeeccCCCceeEeeec--------hHH---HHHHHhcCCCcccHHHHhhchhhhe
Confidence            3333333445566677662  22466777788899887664        111   134566877666654          


Q ss_pred             -eCCCCCCeEEEeeCCCcEEEEecCC-CCCCCccccceeeeeccC
Q psy4577         305 -WNPSLNGYLLSASDDHTICLWDINA-TPKENRVIDAKTIFTGHT  347 (384)
Q Consensus       305 -~s~~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~h~  347 (384)
                       .|||| ..||+++.||.++.|.+-- ++   ....++...+.|.
T Consensus       242 ~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~---~~~rclhewkphd  282 (1283)
T KOG1916|consen  242 SLSPDG-TVFAWAISDGSVGFYQIYITGK---IVHRCLHEWKPHD  282 (1283)
T ss_pred             eeCCCC-cEEEEeecCCccceeeeeeecc---ccHhhhhccCCCC
Confidence             48998 7999999999999998752 22   1233666666676

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=92.17  E-value=7  Score=33.60  Aligned_cols=81  Identities=14%  Similarity=0.165  Sum_probs=43.8

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCC--CccceeeecCCCCceEEE---EeCC--CCCC---
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNG--ECHPDLRLRGHQKEGYGL---SWNP--SLNG---  311 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~~---~~s~--~~~~---  311 (384)
                      .....++++.|-+++. .++.+..+|.+.++.......... .+  .......+. ....|+++   ++.|  .+..   
T Consensus       170 ~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~-~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~  246 (321)
T PF03178_consen  170 YQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSR-DGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPN  246 (321)
T ss_dssp             SS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTT-TTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTE
T ss_pred             CCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccc-cccccceeEEEEE-CCCccceEEEEEeeecCCCCcccc
Confidence            3455688899987774 888889999999999863221110 11  111222222 23467777   6556  2212   


Q ss_pred             --eEEEeeCCCcEEEE
Q psy4577         312 --YLLSASDDHTICLW  325 (384)
Q Consensus       312 --~l~s~s~Dg~i~iw  325 (384)
                        .++-++.+|.|..-
T Consensus       247 ~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  247 RPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEEEEETTS-EEEE
T ss_pred             cceEEEEecCCEEEEE
Confidence              37778889998843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.23  E-value=1.3  Score=23.82  Aligned_cols=28  Identities=11%  Similarity=0.402  Sum_probs=20.7

Q ss_pred             cceEEEEEccCCCcEEEEEecC--CeEEEE
Q psy4577          53 AKISDFSWNPNEPWVICSVSED--NIMQIL   80 (384)
Q Consensus        53 ~~V~~l~~~~~~~~~l~s~s~D--~~i~vw   80 (384)
                      ..-....|+|||+.++.++..+  |.-.||
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            4567889999999787777777  766665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=90.98  E-value=11  Score=33.36  Aligned_cols=69  Identities=9%  Similarity=0.014  Sum_probs=42.5

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC-CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccc
Q psy4577         259 VIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ-KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVI  337 (384)
Q Consensus       259 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  337 (384)
                      .+..++.||.++.+|..        ++..  +....... ....+...  .+ ..|+.++.||.|+++|..+++      
T Consensus       281 ~vyv~~~~G~l~~~d~~--------tG~~--~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~------  341 (377)
T TIGR03300       281 RLYVTDADGVVVALDRR--------SGSE--LWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSREDGS------  341 (377)
T ss_pred             EEEEECCCCeEEEEECC--------CCcE--EEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCCCC------
Confidence            55566789999999985        3322  11111101 11111111  34 588899999999999999987      


Q ss_pred             cceeeeeccC
Q psy4577         338 DAKTIFTGHT  347 (384)
Q Consensus       338 ~~~~~~~~h~  347 (384)
                       .+..+..+.
T Consensus       342 -~~~~~~~~~  350 (377)
T TIGR03300       342 -FVARLKTDG  350 (377)
T ss_pred             -EEEEEEcCC
Confidence             666665444

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=90.83  E-value=7.6  Score=31.43  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=20.3

Q ss_pred             CCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577         306 NPSLNGYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       306 s~~~~~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                      ..++ ..|+.++.|+.|..||+++++
T Consensus       209 ~~~~-~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  209 SVDG-GTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             ECCC-TEEEEEETTTEEEEEETTTTE
T ss_pred             eeeC-CEEEEEeCCCEEEEEECCCCC
Confidence            3555 577777799999999999986

...

>KOG2377|consensus

Probab=90.72  E-value=1.9  Score=37.90  Aligned_cols=104  Identities=14%  Similarity=0.257  Sum_probs=70.4

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      ..+++|.++.|++|++ .+|.--.+..|.+++......      ..+...+-+.....|....|+...+  +|--+ |.-
T Consensus        64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~------~l~~~~~ck~k~~~IlGF~W~~s~e--~A~i~-~~G  133 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNS------QLEYTQECKTKNANILGFCWTSSTE--IAFIT-DQG  133 (657)
T ss_pred             cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCch------hhHHHHHhccCcceeEEEEEecCee--EEEEe-cCC
Confidence            4567999999999996 999999999999999842110      0011112222334688999988753  44443 334


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK  361 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  361 (384)
                      +-+|-+...+.      .++..+.|+..|+...|+|+...
T Consensus       134 ~e~y~v~pekr------slRlVks~~~nvnWy~yc~et~v  167 (657)
T KOG2377|consen  134 IEFYQVLPEKR------SLRLVKSHNLNVNWYMYCPETAV  167 (657)
T ss_pred             eEEEEEchhhh------hhhhhhhcccCccEEEEccccce
Confidence            77777765442      56666678888999999998764

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.49  E-value=2.8  Score=32.23  Aligned_cols=32  Identities=16%  Similarity=0.295  Sum_probs=26.6

Q ss_pred             ceEEEEeCCCC-----CCeEEEeeCCCcEEEEecCCC
Q psy4577         299 EGYGLSWNPSL-----NGYLLSASDDHTICLWDINAT  330 (384)
Q Consensus       299 ~i~~~~~s~~~-----~~~l~s~s~Dg~i~iwd~~~~  330 (384)
                      .+.+++|||.|     .-+||....++.|.||.....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            68899999943     248999999999999988754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2247|consensus

Probab=90.15  E-value=0.11  Score=45.57  Aligned_cols=105  Identities=10%  Similarity=0.142  Sum_probs=74.5

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      .+....++|.-+++..++.+-..+.+.+||++...        . ....+.+ |....  +.|++.+ ..++-+-..|.+
T Consensus        74 tg~aldm~wDkegdvlavlAek~~piylwd~n~ey--------t-qqLE~gg~~s~sl--l~wsKg~-~el~ig~~~gn~  141 (615)
T KOG2247|consen   74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY--------T-QQLESGGTSSKSL--LAWSKGT-PELVIGNNAGNI  141 (615)
T ss_pred             chhHhhhhhccccchhhhhhhcCCCeeechhhhhh--------H-HHHhccCcchHHH--HhhccCC-ccccccccccce
Confidence            34455677877777677777888999999996321        1 1112222 22222  7899988 488888889999


Q ss_pred             EEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         323 CLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      .|++-.+.+       ....+..|..++++++|.+.+..+...|.
T Consensus       142 viynhgtsR-------~iiv~Gkh~RRgtq~av~lEd~vil~dcd  179 (615)
T KOG2247|consen  142 VIYNHGTSR-------RIIVMGKHQRRGTQIAVTLEDYVILCDCD  179 (615)
T ss_pred             EEEeccchh-------hhhhhcccccceeEEEecccceeeecCcH
Confidence            999999886       45545449999999999998876665553

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.14  E-value=1.8  Score=23.26  Aligned_cols=30  Identities=10%  Similarity=0.274  Sum_probs=21.7

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCC--CcEEEE
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPS--SDVLVF  272 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~d--g~i~iw  272 (384)
                      ..+.-....|+|+|+.++.++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            445667889999998777777777  766666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.52  E-value=2.1  Score=40.07  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=24.7

Q ss_pred             ceEEEEeCC----CCCCeEEEeeCCCcEEEEecCCCC
Q psy4577         299 EGYGLSWNP----SLNGYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       299 ~i~~~~~s~----~~~~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                      .+..+++++    +. .+|++.+.|+++|+||+.+++
T Consensus       216 ~~~~~~~~~~~~~~~-~~l~tl~~D~~LRiW~l~t~~  251 (547)
T PF11715_consen  216 VAASLAVSSSEINDD-TFLFTLSRDHTLRIWSLETGQ  251 (547)
T ss_dssp             -EEEEEE-----ETT-TEEEEEETTSEEEEEETTTTC
T ss_pred             ccceEEEecceeCCC-CEEEEEeCCCeEEEEECCCCe
Confidence            455666666    44 799999999999999999987

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.50  E-value=7.9  Score=36.34  Aligned_cols=102  Identities=19%  Similarity=0.292  Sum_probs=58.0

Q ss_pred             CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEE--ccCCCcEEEEEecCCeEEEEEcccCCCccchhhe
Q psy4577          17 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW--NPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEE   94 (384)
Q Consensus        17 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~--~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~   94 (384)
                      ..++.|||.....            .+....+ ...+.|.++.|  .|+++ .+++.|..+.|.++--........    
T Consensus        50 ~~~LtIWD~~~~~------------lE~~~~f-~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~dy~~~----  111 (631)
T PF12234_consen   50 RSELTIWDTRSGV------------LEYEESF-SEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYDYTNK----  111 (631)
T ss_pred             CCEEEEEEcCCcE------------EEEeeee-cCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchhhhcC----
Confidence            3468999987511            1222222 34678999999  46778 566889999999986532110000    


Q ss_pred             eeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee--cceeeeecc
Q psy4577          95 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI--NEEYKIWKK  146 (384)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--d~~v~~w~~  146 (384)
                            ...|..-...   .+..| ...+|.+..|.++|..++  +.++.+++.
T Consensus       112 ------~p~w~~i~~i---~i~~~-T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  112 ------GPSWAPIRKI---DISSH-TPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             ------CcccceeEEE---EeecC-CCCCccceeEecCCeEEEEeCCEEEEECC
Confidence                  0001000000   01111 134688899999998887  666666554

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.34  E-value=6.9  Score=32.30  Aligned_cols=100  Identities=17%  Similarity=0.194  Sum_probs=66.0

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCc-EEEEecCCCCCCCCCCCCcccee-------eecCCCCceEEEEeCCCCCCeEEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSD-VLVFDYTKHPSKPDPNGECHPDL-------RLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~-------~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      ......++|+|..+.-++-+-.-|+ ..++|..         +..++..       .+.||      =.||||| .+|..
T Consensus        67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~---------~~~~pv~~~s~~~RHfyGH------Gvfs~dG-~~LYA  130 (366)
T COG3490          67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPN---------GAQEPVTLVSQEGRHFYGH------GVFSPDG-RLLYA  130 (366)
T ss_pred             ccccCCeecCCCCcceEEEEecCCceEEEECCC---------CCcCcEEEecccCceeecc------cccCCCC-cEEEe
Confidence            3445578888877666666666565 4578874         2222221       23344      3689999 67766


Q ss_pred             eeCC-----CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         316 ASDD-----HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       316 ~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      .-.|     |.|-|||.+..-.      .+..+..|.-.--.+.|.+||..+...
T Consensus       131 TEndfd~~rGViGvYd~r~~fq------rvgE~~t~GiGpHev~lm~DGrtlvva  179 (366)
T COG3490         131 TENDFDPNRGVIGVYDAREGFQ------RVGEFSTHGIGPHEVTLMADGRTLVVA  179 (366)
T ss_pred             ecCCCCCCCceEEEEecccccc------eecccccCCcCcceeEEecCCcEEEEe
Confidence            5444     8999999986432      666677776666788999999876543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.84  E-value=3.8  Score=32.86  Aligned_cols=74  Identities=12%  Similarity=0.025  Sum_probs=47.7

Q ss_pred             cCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec-----CCCCceEEEEeCCCCCCeEEEeeCCCcEEEEec
Q psy4577         253 MPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR-----GHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI  327 (384)
Q Consensus       253 ~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~  327 (384)
                      ..++. +|++-+.+|.+++||+........+ ....|+....     .....|..+..+.+| .-|++-+ +|..+.|+.
T Consensus        19 ~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   19 ECNGS-YLLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EeCCC-EEEEEeCCCeEEEEECCCCeeccCC-ccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecc
Confidence            34564 6777789999999999754322111 1122221110     355678999999888 5676665 588999998


Q ss_pred             CCC
Q psy4577         328 NAT  330 (384)
Q Consensus       328 ~~~  330 (384)
                      .-+
T Consensus        95 ~L~   97 (219)
T PF07569_consen   95 DLG   97 (219)
T ss_pred             ccc
Confidence            765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=88.51  E-value=5.5  Score=32.84  Aligned_cols=102  Identities=15%  Similarity=0.140  Sum_probs=59.1

Q ss_pred             ceEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         246 EVNRARYMPQNPCVIATKT--PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      .+.+.++++++..+.+...  ....++++...         +....  .+.+.  .+..-.|++++ .+.+....+...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~---------~~~~~--~~~g~--~l~~PS~d~~g-~~W~v~~~~~~~~   90 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG---------GPVRP--VLTGG--SLTRPSWDPDG-WVWTVDDGSGGVR   90 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC---------Cccee--eccCC--ccccccccCCC-CEEEEEcCCCceE
Confidence            5788999999974444442  33345555432         22222  22332  67888999997 5666666666777


Q ss_pred             EEe-cCCCCCCCccccceee-eeccCCcEeEEEEecCCCcccccc
Q psy4577         324 LWD-INATPKENRVIDAKTI-FTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       324 iwd-~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      ++. ...++..     .+.. ...-.+.|+++.+||||..++-+-
T Consensus        91 ~~~~~~~g~~~-----~~~v~~~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen   91 VVRDSASGTGE-----PVEVDWPGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             EEEecCCCcce-----eEEecccccCCceEEEEECCCCcEEEEEE
Confidence            774 3333210     1111 111112899999999999766554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.41  E-value=11  Score=36.45  Aligned_cols=84  Identities=20%  Similarity=0.316  Sum_probs=51.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC-CCCCC-CCCccc-eee--------ecCCCCceEEEEeCCCC--CCe
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP-SKPDP-NGECHP-DLR--------LRGHQKEGYGLSWNPSL--NGY  312 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~-~~~~~~-~~~--------~~~h~~~i~~~~~s~~~--~~~  312 (384)
                      .|..|.++|+|. ++|..|..| |.|-.+...- ..... .+.... ..+        ...+...|..+.|+|.+  ...
T Consensus        86 ~v~~i~~n~~g~-~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   86 EVHQISLNPTGS-LLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eEEEEEECCCCC-EEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            588999999996 777767655 4444453211 00000 111100 001        12344589999999963  258


Q ss_pred             EEEeeCCCcEEEEecCCCC
Q psy4577         313 LLSASDDHTICLWDINATP  331 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~~~  331 (384)
                      |+.=..|+++|+||+...+
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            8888899999999997654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=88.30  E-value=10  Score=31.26  Aligned_cols=108  Identities=12%  Similarity=0.048  Sum_probs=62.3

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEe-cCCCCCCCCCCCCcccee-eecCCCCceEEEEeCCCCCCeEEEee---CCC
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFD-YTKHPSKPDPNGECHPDL-RLRGHQKEGYGLSWNPSLNGYLLSAS---DDH  320 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd-~~~~~~~~~~~~~~~~~~-~~~~h~~~i~~~~~s~~~~~~l~s~s---~Dg  320 (384)
                      .+..-.|++++. +.+....+...+++. ..        .+...+.. ....-...|..+.+||||. .+|--.   .++
T Consensus        67 ~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~--------~g~~~~~~v~~~~~~~~I~~l~vSpDG~-RvA~v~~~~~~~  136 (253)
T PF10647_consen   67 SLTRPSWDPDGW-VWTVDDGSGGVRVVRDSA--------SGTGEPVEVDWPGLRGRITALRVSPDGT-RVAVVVEDGGGG  136 (253)
T ss_pred             ccccccccCCCC-EEEEEcCCCceEEEEecC--------CCcceeEEecccccCCceEEEEECCCCc-EEEEEEecCCCC
Confidence            567778899974 666656666667664 21        22222221 1111122899999999994 444433   457


Q ss_pred             cEEEEecCCCCCC-C-ccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         321 TICLWDINATPKE-N-RVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       321 ~i~iwd~~~~~~~-~-~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                      .|.+=-+...... . ....+..........+++++|.+++..+.
T Consensus       137 ~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  137 RVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            8888876543321 1 11122333333456899999999887433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.54  E-value=3.4  Score=38.60  Aligned_cols=34  Identities=12%  Similarity=0.245  Sum_probs=24.5

Q ss_pred             cceEEEEEcc----CCCcEEEEEecCCeEEEEEcccCCC
Q psy4577          53 AKISDFSWNP----NEPWVICSVSEDNIMQILSVVCVEP   87 (384)
Q Consensus        53 ~~V~~l~~~~----~~~~~l~s~s~D~~i~vwd~~~~~~   87 (384)
                      ..+.++++++    +.. +|++.+.|+++|+||+.+++.
T Consensus       215 ~~~~~~~~~~~~~~~~~-~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDT-FLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             --EEEEEE-----ETTT-EEEEEETTSEEEEEETTTTCE
T ss_pred             CccceEEEecceeCCCC-EEEEEeCCCeEEEEECCCCeE
Confidence            3456666666    444 888999999999999998755

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.02  E-value=2.4  Score=23.09  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=18.6

Q ss_pred             CCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577         307 PSLNGYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       307 ~~~~~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                      |++.+++++.-.+++|.++|..+++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~   25 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNK   25 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCe
Confidence            5663455666678999999998776

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=86.42  E-value=4.2  Score=37.12  Aligned_cols=69  Identities=12%  Similarity=0.097  Sum_probs=44.2

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      +-|||... +|+.=.....-.+.++....            ......+.+ .+-|.|.+|.+||+.++++.+..=.-.+|
T Consensus       118 CVWHPk~~-iL~VLT~~dvSV~~sV~~d~------------srVkaDi~~-~G~IhCACWT~DG~RLVVAvGSsLHSyiW  183 (671)
T PF15390_consen  118 CVWHPKKA-ILTVLTARDVSVLPSVHCDS------------SRVKADIKT-SGLIHCACWTKDGQRLVVAVGSSLHSYIW  183 (671)
T ss_pred             ccccCCCc-eEEEEecCceeEeeeeeeCC------------ceEEEeccC-CceEEEEEecCcCCEEEEEeCCeEEEEEe
Confidence            35899887 56655444444556665422            233333333 56899999999999887666665566778


Q ss_pred             Ecc
Q psy4577          81 SVV   83 (384)
Q Consensus        81 d~~   83 (384)
                      |-.
T Consensus       184 d~~  186 (671)
T PF15390_consen  184 DSA  186 (671)
T ss_pred             cCc
Confidence            754

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=86.26  E-value=13  Score=31.52  Aligned_cols=105  Identities=10%  Similarity=0.013  Sum_probs=50.8

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      .-.+.+..+..+++|. ++++++......-||--        .....+  .-+.-...|..|.|.|++ .+.+.+ ..|.
T Consensus       142 ~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G--------~~~w~~--~~r~~~~riq~~gf~~~~-~lw~~~-~Gg~  208 (302)
T PF14870_consen  142 ETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPG--------QTTWQP--HNRNSSRRIQSMGFSPDG-NLWMLA-RGGQ  208 (302)
T ss_dssp             S----EEEEEE-TTS--EEEEETTSSEEEEE-TT---------SS-EE--EE--SSS-EEEEEE-TTS--EEEEE-TTTE
T ss_pred             CCcceeEeEEECCCCc-EEEEECcccEEEEecCC--------CccceE--EccCccceehhceecCCC-CEEEEe-CCcE
Confidence            3457788899999995 77776544444567742        112333  223345689999999997 454433 7788


Q ss_pred             EEEEecCC-CCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         322 ICLWDINA-TPKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       322 i~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      |+.=+... ..   .+..++..+..-.-.+.+++|.+++..-
T Consensus       209 ~~~s~~~~~~~---~w~~~~~~~~~~~~~~ld~a~~~~~~~w  247 (302)
T PF14870_consen  209 IQFSDDPDDGE---TWSEPIIPIKTNGYGILDLAYRPPNEIW  247 (302)
T ss_dssp             EEEEE-TTEEE---EE---B-TTSS--S-EEEEEESSSS-EE
T ss_pred             EEEccCCCCcc---ccccccCCcccCceeeEEEEecCCCCEE
Confidence            88877221 11   0000111121122348899999876543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=86.24  E-value=9.4  Score=33.79  Aligned_cols=97  Identities=14%  Similarity=0.089  Sum_probs=64.8

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee--CCCcEEE
Q psy4577         247 VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS--DDHTICL  324 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s--~Dg~i~i  324 (384)
                      -..++.++.+.+.++....+..|.+.|..        ....... ...|.  .-..++++|++....++-.  .++++.+
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~--------~~~~~~~-~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsv  144 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTA--------TNTVLGS-IPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSV  144 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCc--------ccceeeE-eeecc--CCceEEECCCCCEEEEEecccCCceEEE
Confidence            45678888887678887778999999964        1111111 11222  4568999999854445544  3789999


Q ss_pred             EecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         325 WDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       325 wd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      .|..+.+       .+.+...-..+ ..+++.|+|..+
T Consensus       145 id~~t~~-------~~~~~~vG~~P-~~~a~~p~g~~v  174 (381)
T COG3391         145 IDAATNK-------VTATIPVGNTP-TGVAVDPDGNKV  174 (381)
T ss_pred             EeCCCCe-------EEEEEecCCCc-ceEEECCCCCeE
Confidence            9998887       66654433344 788999998843

>KOG3630|consensus

Probab=86.10  E-value=1.4  Score=43.21  Aligned_cols=104  Identities=11%  Similarity=-0.010  Sum_probs=67.6

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      -..++.|.|.-+...|....|+.|++..+...         ......+. -....++++|+|.| ..++.|-..|++..|
T Consensus       157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~---------~~~v~s~p-~t~~~Tav~WSprG-KQl~iG~nnGt~vQy  225 (1405)
T KOG3630|consen  157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL---------AQNVTSFP-VTNSQTAVLWSPRG-KQLFIGRNNGTEVQY  225 (1405)
T ss_pred             ccccccccCCccchhhhhccccchhhhhhhhh---------hhhhcccC-cccceeeEEecccc-ceeeEecCCCeEEEe
Confidence            35677888876666777788999999887521         11111221 34468999999999 899999999999999


Q ss_pred             ecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccc
Q psy4577         326 DINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADP  364 (384)
Q Consensus       326 d~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  364 (384)
                      ...-.-+.  .+.+.-.+  -...|.+|+|--....+..
T Consensus       226 ~P~leik~--~ip~Pp~~--e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  226 EPSLEIKS--EIPEPPVE--ENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             ecccceee--cccCCCcC--CCcceeEEEEecceeEEEE
Confidence            77544111  00011111  1467899999765554443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.53  E-value=20  Score=29.82  Aligned_cols=106  Identities=13%  Similarity=0.156  Sum_probs=56.1

Q ss_pred             CCCCCCCCceEEEeeCCCe-EEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecC-----
Q psy4577           1 VQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED-----   74 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D-----   74 (384)
                      |.|+|.-+.-+|-+-.-|+ ..++|.....+....      ....-..+.||.      .|||||. +|...-.|     
T Consensus        73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~------~s~~~RHfyGHG------vfs~dG~-~LYATEndfd~~r  139 (366)
T COG3490          73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL------VSQEGRHFYGHG------VFSPDGR-LLYATENDFDPNR  139 (366)
T ss_pred             eecCCCCcceEEEEecCCceEEEECCCCCcCcEEE------ecccCceeeccc------ccCCCCc-EEEeecCCCCCCC
Confidence            4566766655666655554 456776653211000      001112334664      6999999 44443332     


Q ss_pred             CeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee--cceeeee
Q psy4577          75 NIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI--NEEYKIW  144 (384)
Q Consensus        75 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--d~~v~~w  144 (384)
                      |.|-|||...+  +                ..-+     .+.+|  .-....+.+.+||+.++  +|-|...
T Consensus       140 GViGvYd~r~~--f----------------qrvg-----E~~t~--GiGpHev~lm~DGrtlvvanGGIeth  186 (366)
T COG3490         140 GVIGVYDAREG--F----------------QRVG-----EFSTH--GIGPHEVTLMADGRTLVVANGGIETH  186 (366)
T ss_pred             ceEEEEecccc--c----------------ceec-----ccccC--CcCcceeEEecCCcEEEEeCCceecc
Confidence            67888887642  0                1111     11122  22334788999998776  7766654

>KOG2377|consensus

Probab=84.92  E-value=13  Score=32.98  Aligned_cols=99  Identities=9%  Similarity=-0.040  Sum_probs=59.9

Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEec
Q psy4577         248 NRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI  327 (384)
Q Consensus       248 ~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~  327 (384)
                      +.+-|.-.++.++++-|  |.+.=|-.+..       +...|+..-....++|.++.||+|. +.||.--.|.+|.+.+.
T Consensus        26 ngvFfDDaNkqlfavrS--ggatgvvvkgp-------ndDVpiSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf   95 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRS--GGATGVVVKGP-------NDDVPISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNF   95 (657)
T ss_pred             cceeeccCcceEEEEec--CCeeEEEEeCC-------CCCCCceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEec
Confidence            45556555554554433  44556665432       1122322222345699999999998 89999999999999999


Q ss_pred             CCCCCCCccccceeeeeccCCcEeEEEEecCC
Q psy4577         328 NATPKENRVIDAKTIFTGHTAVVELELIERLT  359 (384)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~  359 (384)
                      ...+..   .....+.+.-+..|....|+...
T Consensus        96 ~~d~~~---l~~~~~ck~k~~~IlGF~W~~s~  124 (657)
T KOG2377|consen   96 IPDNSQ---LEYTQECKTKNANILGFCWTSST  124 (657)
T ss_pred             CCCchh---hHHHHHhccCcceeEEEEEecCe
Confidence            654410   00223333344568888887653

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=83.78  E-value=36  Score=33.02  Aligned_cols=87  Identities=11%  Similarity=0.223  Sum_probs=46.3

Q ss_pred             cceEEEEEccCCCcEEEEEecCCeEEEEEcccC---CCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEE
Q psy4577          53 AKISDFSWNPNEPWVICSVSEDNIMQILSVVCV---EPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQW  129 (384)
Q Consensus        53 ~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  129 (384)
                      -.|..|..+|+|. +||-.|.. .|.|-.+...   ...-........   ++.+.....+     ........|..+.|
T Consensus        85 f~v~~i~~n~~g~-~lal~G~~-~v~V~~LP~r~g~~~~~~~g~~~i~---Crt~~v~~~~-----~~~~~~~~i~qv~W  154 (717)
T PF10168_consen   85 FEVHQISLNPTGS-LLALVGPR-GVVVLELPRRWGKNGEFEDGKKEIN---CRTVPVDERF-----FTSNSSLEIKQVRW  154 (717)
T ss_pred             eeEEEEEECCCCC-EEEEEcCC-cEEEEEeccccCccccccCCCccee---EEEEEechhh-----ccCCCCceEEEEEE
Confidence            3688999999999 66555554 4555455321   000000011111   1111111111     11112346779999


Q ss_pred             ecCc---eeee----cceeeeeccccc
Q psy4577         130 LPDV---TRVI----NEEYKIWKKNTP  149 (384)
Q Consensus       130 ~~~~---~~~~----d~~v~~w~~~~~  149 (384)
                      +|.+   ..++    |+++|+||+...
T Consensus       155 hP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  155 HPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             cCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            9985   4444    999999998644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1916|consensus

Probab=83.57  E-value=0.5  Score=44.86  Aligned_cols=58  Identities=10%  Similarity=0.314  Sum_probs=35.6

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEE-----------ccCCCcEEEEEecCCeE
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW-----------NPNEPWVICSVSEDNIM   77 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~-----------~~~~~~~l~s~s~D~~i   77 (384)
                      .+++.+-.++.|++.++.+               .....+.+|...+++++|           +|||+ .+|.++.||.+
T Consensus       196 ~~ic~~~~~~~i~lL~~~r---------------a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v  259 (1283)
T KOG1916|consen  196 VYICYGLKGGEIRLLNINR---------------ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSV  259 (1283)
T ss_pred             ceeeeccCCCceeEeeech---------------HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCcc
Confidence            3567777778887776654               222344568777777765           45555 55555666666


Q ss_pred             EEEEc
Q psy4577          78 QILSV   82 (384)
Q Consensus        78 ~vwd~   82 (384)
                      +.|.+
T Consensus       260 ~f~Qi  264 (1283)
T KOG1916|consen  260 GFYQI  264 (1283)
T ss_pred             ceeee
Confidence            55554

>KOG4649|consensus

Probab=83.40  E-value=9.2  Score=31.14  Aligned_cols=63  Identities=10%  Similarity=-0.024  Sum_probs=44.8

Q ss_pred             cEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577         258 CVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       258 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                      ++++.|+..|.+++-+.+        ++..  ...+..-..-=......+++ +++..|+.|++.+.-|.++..
T Consensus        64 dfVV~GCy~g~lYfl~~~--------tGs~--~w~f~~~~~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~  126 (354)
T KOG4649|consen   64 DFVVLGCYSGGLYFLCVK--------TGSQ--IWNFVILETVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYG  126 (354)
T ss_pred             CEEEEEEccCcEEEEEec--------chhh--eeeeeehhhhccceEEcCCC-ceEEEecCCCcEEEecccccc
Confidence            478999999999999886        4432  22222222211234567787 799999999999999999876

>KOG3630|consensus

Probab=83.38  E-value=2.4  Score=41.67  Aligned_cols=108  Identities=13%  Similarity=0.051  Sum_probs=65.1

Q ss_pred             ceEEEEEcCCCCcE-EEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC------CCceEEEEeCCCCCCeEEEeeC
Q psy4577         246 EVNRARYMPQNPCV-IATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH------QKEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       246 ~v~~v~~~p~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h------~~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      .+..+...+++... ++..+++-.|..||++........  ...+   |..|      ..-..++.|+|.-+...+.+..
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~--~~~p---l~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~  176 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE--TTVP---LKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS  176 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh--hccc---cccccchhccccccccccccCCccchhhhhcc
Confidence            34445555665322 222334446888999754322100  1111   2222      2245688999987777888999


Q ss_pred             CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         319 DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       319 Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      |+.|++..+....+      .+.++. ....+++++|+|.|+++...
T Consensus       177 dlsl~V~~~~~~~~------~v~s~p-~t~~~Tav~WSprGKQl~iG  216 (1405)
T KOG3630|consen  177 DLSLRVKSTKQLAQ------NVTSFP-VTNSQTAVLWSPRGKQLFIG  216 (1405)
T ss_pred             ccchhhhhhhhhhh------hhcccC-cccceeeEEeccccceeeEe
Confidence            99999998876542      333332 45678999999999975543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=83.15  E-value=26  Score=31.30  Aligned_cols=87  Identities=14%  Similarity=0.102  Sum_probs=53.4

Q ss_pred             EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCc----eEEEEeCC--------
Q psy4577         240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE----GYGLSWNP--------  307 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~----i~~~~~s~--------  307 (384)
                      +......+.+|+.+|.+. +.|+...=|.|.++|+.        .+  ..+..++|..+.    +....-..        
T Consensus       303 l~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~--------~~--~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~  371 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVA--------RG--IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNS  371 (415)
T ss_pred             eccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECC--------CC--hhhhhhccCccceEEEEEeecccccccccccc
Confidence            334556789999999984 88887777999999986        22  233455554431    11110000        


Q ss_pred             ------CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee
Q psy4577         308 ------SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT  344 (384)
Q Consensus       308 ------~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  344 (384)
                            ..-.+++=+-.-|.|-||.++.+.       .+..+.
T Consensus       372 ~~~~~~~~l~LvIyaprRg~lEvW~~~~g~-------Rv~a~~  407 (415)
T PF14655_consen  372 PKSSSRFALFLVIYAPRRGILEVWSMRQGP-------RVAAFN  407 (415)
T ss_pred             cCCCCcceEEEEEEeccCCeEEEEecCCCC-------EEEEEE
Confidence                  010133335567899999999987       666554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=83.09  E-value=13  Score=33.31  Aligned_cols=49  Identities=14%  Similarity=0.354  Sum_probs=36.7

Q ss_pred             cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCC
Q psy4577         268 DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINA  329 (384)
Q Consensus       268 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~  329 (384)
                      .|+||+.         .|.......+..  +.|.++.|+.+.  .|+.-..||.++++|+..
T Consensus        62 ~I~iys~---------sG~ll~~i~w~~--~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   62 SIQIYSS---------SGKLLSSIPWDS--GRIVGMGWTDDE--ELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEEECC---------CCCEeEEEEECC--CCEEEEEECCCC--eEEEEEcCCEEEEEeCCC
Confidence            4999997         455433334444  789999999873  567778999999999863

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=82.59  E-value=5.9  Score=21.48  Aligned_cols=23  Identities=13%  Similarity=0.312  Sum_probs=18.1

Q ss_pred             CCCCceEEEeeCCCeEEEeecCC
Q psy4577           5 PHNETILASSGTDRRLHVWDLSK   27 (384)
Q Consensus         5 p~~~~~lat~~~d~~i~vwd~~~   27 (384)
                      |+++.++++...+++|.++|..+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~   23 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTAT   23 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCC
Confidence            67776667776789999999865

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2280|consensus

Probab=82.41  E-value=47  Score=31.76  Aligned_cols=31  Identities=13%  Similarity=0.455  Sum_probs=26.1

Q ss_pred             ccceEEEEEccCCCcEEEEEecCCeEEEEEccc
Q psy4577          52 TAKISDFSWNPNEPWVICSVSEDNIMQILSVVC   84 (384)
Q Consensus        52 ~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~   84 (384)
                      .+.+..+.|+.+.. + +....||++.++++..
T Consensus        83 ~~~lI~mgWs~~ee-L-I~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   83 HGELIGMGWSDDEE-L-ICVQKDGTVHVYGLLG  113 (829)
T ss_pred             CCCeeeecccCCce-E-EEEeccceEEEeecch
Confidence            34888999999888 5 4789999999999865

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=81.95  E-value=4.6  Score=32.43  Aligned_cols=69  Identities=17%  Similarity=0.136  Sum_probs=42.9

Q ss_pred             CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-------ccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577           6 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-------GHTAKISDFSWNPNEPWVICSVSEDNIMQ   78 (384)
Q Consensus         6 ~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-------gh~~~V~~l~~~~~~~~~l~s~s~D~~i~   78 (384)
                      .+. +|.+-..+|.+++||+.+.+......       .+...+.       .....|..+..+.+|. -|++-+ +|...
T Consensus        21 ~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~-------Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y   90 (219)
T PF07569_consen   21 NGS-YLLAITSSGLLYVWNLKKGKAVLPPV-------SIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSY   90 (219)
T ss_pred             CCC-EEEEEeCCCeEEEEECCCCeeccCCc-------cHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEE
Confidence            454 57777889999999998743111100       0000111       3456899999998887 555654 46778


Q ss_pred             EEEccc
Q psy4577          79 ILSVVC   84 (384)
Q Consensus        79 vwd~~~   84 (384)
                      .|+..=
T Consensus        91 ~y~~~L   96 (219)
T PF07569_consen   91 SYSPDL   96 (219)
T ss_pred             Eecccc
Confidence            887643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=81.89  E-value=2.6  Score=37.64  Aligned_cols=59  Identities=12%  Similarity=0.163  Sum_probs=43.7

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcc
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVV   83 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~   83 (384)
                      .++|.||.-|-|++||.-.              ......+++-...|..+..+.+|+++||||-  ..+.+-|+.
T Consensus       574 GyIa~as~kGDirLyDRig--------------~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~  632 (776)
T COG5167         574 GYIAAASRKGDIRLYDRIG--------------KRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP  632 (776)
T ss_pred             ceEEEecCCCceeeehhhc--------------chhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence            4899999999999999754              1223344566678999999999997777753  366666664

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=80.12  E-value=8.7  Score=30.36  Aligned_cols=58  Identities=14%  Similarity=0.198  Sum_probs=38.7

Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC
Q psy4577         249 RARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       249 ~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      .++-.+.+ .+|++ .....|.+|++.        ...+.++..|..- +.|..+.++..| .||+|-=.
T Consensus        22 ~~c~~g~d-~Lfva-~~g~~Vev~~l~--------~~~~~~~~~F~Tv-~~V~~l~y~~~G-DYlvTlE~   79 (215)
T PF14761_consen   22 AVCCGGPD-ALFVA-ASGCKVEVYDLE--------QEECPLLCTFSTV-GRVLQLVYSEAG-DYLVTLEE   79 (215)
T ss_pred             eeeccCCc-eEEEE-cCCCEEEEEEcc--------cCCCceeEEEcch-hheeEEEecccc-ceEEEEEe
Confidence            34434433 24443 456789999996        3445566666644 689999999999 69998543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	384
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-120
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-119
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-119
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-119
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-110
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-109

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score =  427 bits (1097), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 198/217 (91%), Positives = 215/217 (99%)
Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD+SIHRL+LGTHTSD
Sbjct: 15  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD 74
Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHL+IASVQLPN+DAQFDAS+YD++KG+FGGFGSVSGKIEIEIKINHEGEVNRARYMP
Sbjct: 75  EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMP 134
Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNPC+IATKTPSSDVLVFDYTKHPSKPDP+GEC+PDLRLRGHQKEGYGLSWNP+L+G+LL
Sbjct: 135 QNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLL 194
Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDI+A PKE +V+DAKTIFTGHTAVVE
Sbjct: 195 SASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/217 (91%), Positives = 210/217 (96%)
Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT+ +GKDYS+HRLILGTHTSD
Sbjct: 21  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 80
Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHLLIASVQLP+EDAQFD S+YD +KG+FGGFGSV GKIEIEIKINHEGEVNRARYMP
Sbjct: 81  EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMP 140
Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QN CVIATKTPSSDVLVFDYTKHPSKP+P+GEC PDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 141 QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 200
Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDINATPKE+RVIDAK IFTGHTAVVE
Sbjct: 201 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/217 (91%), Positives = 210/217 (96%)
Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT+ +GKDYS+HRLILGTHTSD
Sbjct: 19  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 78
Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHLLIASVQLP+EDAQFD S+YD +KG+FGGFGSV GKIEIEIKINHEGEVNRARYMP
Sbjct: 79  EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMP 138
Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QN CVIATKTPSSDVLVFDYTKHPSKP+P+GEC PDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 139 QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198
Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDINATPKE+RVIDAK IFTGHTAVVE
Sbjct: 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score =  423 bits (1088), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/217 (91%), Positives = 210/217 (96%)
Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT+ +GKDYS+HRLILGTHTSD
Sbjct: 23  RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD 82
Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHLLIASVQLP+EDAQFD S+YD +KG+FGGFGSV GKIEIEIKINHEGEVNRARYMP
Sbjct: 83  EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMP 142
Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QN CVIATKTPSSDVLVFDYTKHPSKP+P+GEC PDLRLRGHQKEGYGLSWNP+LNGYLL
Sbjct: 143 QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 202
Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHTICLWDINATPKE+RVIDAK IFTGHTAVVE
Sbjct: 203 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  395 bits (1016), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 180/217 (82%), Positives = 206/217 (94%)
Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+VT+PEGKDY++H L+LGTHTSD
Sbjct: 17  RVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD 76
Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHL++A V +PN+DAQFDAS+ D+DKG+FGGFGSV+GKIE EIKINHEGEVNRARYMP
Sbjct: 77  EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMP 136
Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNP +IATKTPSSDVLVFDYTKHP+KPDP+GEC+PDLRLRGHQKEGYGLSWN +L+G+LL
Sbjct: 137 QNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL 196
Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHT+CLWDINA PKE +++DAK IFTGH+AVVE
Sbjct: 197 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  390 bits (1001), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 178/217 (82%), Positives = 204/217 (94%)
Query: 135 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD 194
           RVINEEYKIWKKNTPFLYDLV THAL+WPSLT QWLP+VT+PEGKDY++H L+LGTHTSD
Sbjct: 17  RVINEEYKIWKKNTPFLYDLVXTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSD 76
Query: 195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP 254
           EQNHL++A V +PN+DAQFDAS+ D+DKG+FGGFGSV+GKIE EIKINHEGEVNRARY P
Sbjct: 77  EQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYXP 136
Query: 255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL 314
           QNP +IATKTPSSDVLVFDYTKHP+KPDP+GEC+PDLRLRGHQKEGYGLSWN +L+G+LL
Sbjct: 137 QNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLL 196
Query: 315 SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE 351
           SASDDHT+CLWDINA PKE +++DAK IFTGH+AVVE
Sbjct: 197 SASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.98
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.98
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.93
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.93
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.88
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.87
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.8
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.8
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.76
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.75
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.75
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.75
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.74
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.73
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.72
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.7
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.69
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.68
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.67
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.63
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.62
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.62
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.62
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.61
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.61
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.61
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.6
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.59
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.57
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.57
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.54
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.54
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.52
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.46
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.46
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.45
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.44
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.4
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.38
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.38
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.36
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.36
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.35
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.35
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.33
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.33
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.31
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.28
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.27
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.25
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.22
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.21
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.2
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.19
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.18
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.18
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.15
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.13
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.12
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.1
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.09
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.08
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.07
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.01
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.99
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.97
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.93
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.93
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.91
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.86
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.82
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.79
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.79
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.77
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.76
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.76
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.72
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.7
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.66
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.63
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.48
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.46
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.44
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.43
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.37
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.3
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.13
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.05
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.02
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.01
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.84
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.8
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.8
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.79
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.76
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.6
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.59
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.57
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.55
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.48
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.45
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.44
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.29
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.27
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.26
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.24
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.23
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.19
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.98
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.96
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.81
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.76
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.75
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.74
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.63
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.53
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.5
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.35
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.25
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.17
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.72
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.68
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.46
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.13
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.9
4a2l_A	795	BT_4663, two-component system sensor histidine kin	94.79
2p4o_A	306	Hypothetical protein; putative lactonase, structur	94.53
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	94.44
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.11
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	93.87
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	93.6
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.43
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	93.33
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	93.31
4a2l_A	795	BT_4663, two-component system sensor histidine kin	93.13
3v65_B	386	Low-density lipoprotein receptor-related protein;	93.1
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	92.5
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	92.49
3v9f_A	781	Two-component system sensor histidine kinase/RESP	92.03
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	91.95
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.56
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	91.54
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.51
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	91.36
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	90.91
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	90.3
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	88.49
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	88.1
3v9f_A	781	Two-component system sensor histidine kinase/RESP	87.12
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	86.97
3kya_A	496	Putative phosphatase; structural genomics, joint c	86.83
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	85.77
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	84.21
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	81.96
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	80.95
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	80.34

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.2e-39  Score=286.12  Aligned_cols=265  Identities=16%  Similarity=0.257  Sum_probs=207.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. +||+|+.|++|+|||+.+              .+....+.+|.+.|++++|+|++. +|++|+.|++|++|
T Consensus       114 ~~~~p~~~-~l~s~s~Dg~i~vwd~~~--------------~~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i~iw  177 (410)
T 1vyh_C          114 VIFHPVFS-VMVSASEDATIKVWDYET--------------GDFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLW  177 (410)
T ss_dssp             EEECSSSS-EEEEEESSSCEEEEETTT--------------CCCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCCCEE
T ss_pred             EEEcCCCC-EEEEEeCCCeEEEEECCC--------------CcEEEEEeccCCcEEEEEEcCCCC-EEEEEeCCCeEEEE
Confidence            46999997 899999999999999986              356677899999999999999999 88999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.+.+.                        ...+.+|  ...|.+++|+|++..++    |+++++||+........+.
T Consensus       178 d~~~~~~------------------------~~~~~~h--~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~  231 (410)
T 1vyh_C          178 DFQGFEC------------------------IRTMHGH--DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT  231 (410)
T ss_dssp             ETTSSCE------------------------EECCCCC--SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eCCCCce------------------------eEEEcCC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            9976411                        1133345  56799999999998887    9999999998765544333


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+..                                       .+..+.+++++..+.....|...+.|..    .....
T Consensus       232 ~h~~---------------------------------------~v~~~~~~~~g~~l~s~s~D~~v~vwd~----~~~~~  268 (410)
T 1vyh_C          232 GHRE---------------------------------------WVRMVRPNQDGTLIASCSNDQTVRVWVV----ATKEC  268 (410)
T ss_dssp             CCSS---------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEET----TTCCE
T ss_pred             CCCc---------------------------------------cEEEEEECCCCCEEEEEcCCCeEEEEEC----CCCce
Confidence            3321                                       1233334444444444444544444422    11223


Q ss_pred             EEEEeecCCceEEEEEcCCC-------------------CcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC
Q psy4577         237 IEIKINHEGEVNRARYMPQN-------------------PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ  297 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~-------------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~  297 (384)
                      ...+..|...|.+++|+|++                   ..+|++|+.|+.|++||++        .+  ..+..+.+|.
T Consensus       269 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~--------~~--~~~~~~~~h~  338 (410)
T 1vyh_C          269 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS--------TG--MCLMTLVGHD  338 (410)
T ss_dssp             EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT--------TT--EEEEEEECCS
T ss_pred             eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC--------CC--ceEEEEECCC
Confidence            45566899999999999962                   1489999999999999986        33  3566889999


Q ss_pred             CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       298 ~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      ..|++++|+|++ .+|+||+.||+|++||+++++       ++.++.+|...|++++|+|+++.+++.+..
T Consensus       339 ~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D  401 (410)
T 1vyh_C          339 NWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKR-------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVD  401 (410)
T ss_dssp             SCEEEEEECSSS-SCEEEEETTTEEEEECCTTSC-------CCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred             CcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-------eEEEEcCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            999999999998 799999999999999999888       899999999999999999999987765543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6e-39  Score=273.75  Aligned_cols=268  Identities=15%  Similarity=0.189  Sum_probs=202.8

Q ss_pred             CCCCCCC---CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeE
Q psy4577           1 VQWSPHN---ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM   77 (384)
Q Consensus         1 v~fsp~~---~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i   77 (384)
                      |+|+|++   ..+||||+.|++|+|||+....            ..+...+.||...|.+++|++++. ++++++.|++|
T Consensus        38 v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~------------~~~~~~l~gh~~~v~~~~~~~~~~-~l~s~s~D~~i  104 (321)
T 3ow8_A           38 VAWGTNKKENSETVVTGSLDDLVKVWKWRDER------------LDLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHI  104 (321)
T ss_dssp             EEEC-------CEEEEEETTSCEEEEEEETTE------------EEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSEE
T ss_pred             EEEecCCCCCCCEEEEEcCCCCEEEEECCCCC------------eeeeeeeccCCCCEEEEEECCCCC-EEEEEeCCCcE
Confidence            4677752   2489999999999999987521            245567899999999999999999 88999999999


Q ss_pred             EEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccc
Q psy4577          78 QILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYD  153 (384)
Q Consensus        78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~  153 (384)
                      ++||+.+++             .+..           +..|  ...+.+++|+|+++.++    ++.+++|+........
T Consensus       105 ~lWd~~~~~-------------~~~~-----------~~~~--~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~  158 (321)
T 3ow8_A          105 RLWDLENGK-------------QIKS-----------IDAG--PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY  158 (321)
T ss_dssp             EEEETTTTE-------------EEEE-----------EECC--TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEE
T ss_pred             EEEECCCCC-------------EEEE-----------EeCC--CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeE
Confidence            999998751             1111           1122  34577899999999888    8999999987654322


Q ss_pred             eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCC
Q psy4577         154 LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG  233 (384)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  233 (384)
                      .+..+..                                       .+..+.+++++..+.....|.....|+.    ..
T Consensus       159 ~~~~~~~---------------------------------------~v~~~~~spdg~~lasg~~dg~i~iwd~----~~  195 (321)
T 3ow8_A          159 SLDTRGK---------------------------------------FILSIAYSPDGKYLASGAIDGIINIFDI----AT  195 (321)
T ss_dssp             EEECSSS---------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEET----TT
T ss_pred             EecCCCc---------------------------------------eEEEEEECCCCCEEEEEcCCCeEEEEEC----CC
Confidence            2221111                                       2344445555555555555554444322    12


Q ss_pred             ceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577         234 KIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       234 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l  313 (384)
                      ...+..+.+|...|++++|+|+++ +|++|+.|+.|++||++        .+  .....+.+|...|.+++|+|++ .+|
T Consensus       196 ~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~--------~~--~~~~~~~~h~~~v~~~~~sp~~-~~l  263 (321)
T 3ow8_A          196 GKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQ--------HA--NLAGTLSGHASWVLNVAFCPDD-THF  263 (321)
T ss_dssp             TEEEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETT--------TC--CEEEEECCCSSCEEEEEECTTS-SEE
T ss_pred             CcEEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECC--------Cc--ceeEEEcCCCCceEEEEECCCC-CEE
Confidence            233556678999999999999995 99999999999999986        23  2456889999999999999998 799


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccccc
Q psy4577         314 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLE  369 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~  369 (384)
                      ++|+.|++|++||+++++       ++.++.+|...|++++|+|+++.+++.+...
T Consensus       264 ~s~s~D~~v~iwd~~~~~-------~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~  312 (321)
T 3ow8_A          264 VSSSSDKSVKVWDVGTRT-------CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ  312 (321)
T ss_dssp             EEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             EEEeCCCcEEEEeCCCCE-------EEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            999999999999999988       9999999999999999999999887665433

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.8e-39  Score=277.01  Aligned_cols=234  Identities=14%  Similarity=0.108  Sum_probs=182.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|++  .|++|+.||+|+|||+.+...          .......+.+|.+.|++|+|+|+++ +|++|+.|++|++|
T Consensus        88 ~~~s~d~--~l~~~s~dg~v~lWd~~~~~~----------~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iw  154 (344)
T 4gqb_B           88 LTWVGER--GILVASDSGAVELWELDENET----------LIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVW  154 (344)
T ss_dssp             EEEETTT--EEEEEETTSEEEEEEECTTSS----------CEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred             EEEeCCC--eEEEEECCCEEEEEeccCCCc----------eeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEE
Confidence            4689985  488999999999999986321          1123345679999999999999999 88899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCcee-ee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR-VI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |+.+++             .+           ..+.+|  ...|.+++|+|++.. ++    |++|++||++.......+
T Consensus       155 d~~~~~-------------~~-----------~~~~~h--~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          155 DLAQQV-------------VL-----------SSYRAH--AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI  208 (344)
T ss_dssp             ETTTTE-------------EE-----------EEECCC--SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred             ECCCCc-------------EE-----------EEEcCc--CCceEEEEecCCCCCceeeeccccccccccccccceeeee
Confidence            998751             11           233455  678999999999864 33    899999998654321100


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                      
T Consensus       209 --------------------------------------------------------------------------------  208 (344)
T 4gqb_B          209 --------------------------------------------------------------------------------  208 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                         ....|...+.+++|+|++.++|++|+.||.|++||++        .+  +++..+.+|...|++++|+|++.++|||
T Consensus       209 ---~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~--------~~--~~~~~~~~h~~~v~~v~fsp~g~~~las  275 (344)
T 4gqb_B          209 ---GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK--------ST--SCVLSSAVHSQCVTGLVFSPHSVPFLAS  275 (344)
T ss_dssp             ---C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC--------C----CCEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred             ---ecceeeccceeeeecCCCCcceEEeccCCcEEEEECC--------CC--cEEEEEcCCCCCEEEEEEccCCCeEEEE
Confidence               0012445688999999776799999999999999986        33  3567899999999999999998568999


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccccccccee
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKK  374 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~  374 (384)
                      |+.|++|+|||+++++       + ..+.+|.+.|++++|||+++.+.+.|..+...+-
T Consensus       276 gs~D~~i~vwd~~~~~-------~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~  326 (344)
T 4gqb_B          276 LSEDCSLAVLDSSLSE-------L-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH  326 (344)
T ss_dssp             EETTSCEEEECTTCCE-------E-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             EeCCCeEEEEECCCCc-------E-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence            9999999999998874       4 4578999999999999999988877776655443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.2e-38  Score=272.89  Aligned_cols=270  Identities=16%  Similarity=0.179  Sum_probs=202.2

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+++ +||+|+.|++|+|||+.+              ...+..+..|...|.+++|+|++. +|++++.|+.|++|
T Consensus        61 ~~~s~d~~-~l~s~s~Dg~v~iWd~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iw  124 (340)
T 1got_B           61 MHWGTDSR-LLLSASQDGKLIIWDSYT--------------TNKVHAIPLRSSWVMTCAYAPSGN-YVACGGLDNICSIY  124 (340)
T ss_dssp             EEECTTSS-EEEEEETTTEEEEEETTT--------------CCEEEEEECSSSCEEEEEECTTSS-EEEEEETTCEEEEE
T ss_pred             EEECCCCC-EEEEEeCCCcEEEEECCC--------------CCcceEeecCCccEEEEEECCCCC-EEEEEeCCCeEEEE
Confidence            47999997 899999999999999876              356677789999999999999999 88899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceeec
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~  157 (384)
                      ++.+.+.                    ...+...+.+|  ...+.++.|++++..+.   |+++++||+.+......+..
T Consensus       125 ~~~~~~~--------------------~~~~~~~~~~h--~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~  182 (340)
T 1got_B          125 NLKTREG--------------------NVRVSRELAGH--TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG  182 (340)
T ss_dssp             ETTTCSB--------------------SCEEEEEEECC--SSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             ECccCCC--------------------cceeEEEecCC--CccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcC
Confidence            9976311                    00111233455  56789999999987554   99999999977655433333


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI  237 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  237 (384)
                      +..                                       .+..+.+++++..+.....|...+.|+.    ......
T Consensus       183 h~~---------------------------------------~v~~~~~~~~~~~l~sg~~d~~v~~wd~----~~~~~~  219 (340)
T 1got_B          183 HTG---------------------------------------DVMSLSLAPDTRLFVSGACDASAKLWDV----REGMCR  219 (340)
T ss_dssp             CSS---------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEET----TTCSEE
T ss_pred             CCC---------------------------------------ceEEEEECCCCCEEEEEeCCCcEEEEEC----CCCeeE
Confidence            322                                       1333444444444444444444444322    112234


Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      ..+.+|...|++++|+|++. +|++|+.||+|++||++        .+..........+...|++++|+|++ .+|++|+
T Consensus       220 ~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~--------~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~  289 (340)
T 1got_B          220 QTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLR--------ADQELMTYSHDNIICGITSVSFSKSG-RLLLAGY  289 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------TTEEEEEECCTTCCSCEEEEEECTTS-SEEEEEE
T ss_pred             EEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECC--------CCcEEEEEccCCcccceEEEEECCCC-CEEEEEC
Confidence            55678999999999999995 99999999999999996        33222212222344579999999999 7999999


Q ss_pred             CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         318 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      .||.|++||+.+++       .+..+.+|..+|++++|+|++..+++.+..
T Consensus       290 ~d~~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D  333 (340)
T 1got_B          290 DDFNCNVWDALKAD-------RAGVLAGHDNRVSCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             TTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             CCCeEEEEEcccCc-------EeeEeecCCCcEEEEEEcCCCCEEEEEcCC
Confidence            99999999999988       889999999999999999999988766543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.9e-38  Score=267.80  Aligned_cols=259  Identities=14%  Similarity=0.159  Sum_probs=198.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|+++ +||+|+.||+|+|||+.+              ...+..+.+|..+|.+++|+|+++ +|++|+.|++|++|
T Consensus        19 ~~fsp~~~-~l~s~~~dg~v~lWd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~vw   82 (304)
T 2ynn_A           19 IDFHPTEP-WVLTTLYSGRVELWNYET--------------QVEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFRIRVF   82 (304)
T ss_dssp             EEECSSSS-EEEEEETTSEEEEEETTT--------------TEEEEEEECCSSCEEEEEEEGGGT-EEEEEETTSEEEEE
T ss_pred             EEECCCCC-EEEEEcCCCcEEEEECCC--------------CceeEEeeccCCcEEEEEEeCCCC-EEEEECCCCEEEEE
Confidence            57999997 899999999999999986              467788889999999999999999 88899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccc-ccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFL-YDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~-~~~~  155 (384)
                      |+.+++.             +           ..+.+|  ...|.+++|+|+++.++    |++|++||+..... ...+
T Consensus        83 d~~~~~~-------------~-----------~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  136 (304)
T 2ynn_A           83 NYNTGEK-------------V-----------VDFEAH--PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (304)
T ss_dssp             ETTTCCE-------------E-----------EEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred             ECCCCcE-------------E-----------EEEeCC--CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence            9987521             1           123344  67799999999999887    99999999876422 2222


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCC-CcccccccccCcCCCCCCccCCCCc
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNE-DAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      ..+..                                       .+.++.+++. +..+.....|...+.|+..   ...
T Consensus       137 ~~h~~---------------------------------------~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~---~~~  174 (304)
T 2ynn_A          137 EGHEH---------------------------------------FVMCVAFNPKDPSTFASGCLDRTVKVWSLG---QST  174 (304)
T ss_dssp             CCCCS---------------------------------------CEEEEEECTTCTTEEEEEETTSEEEEEETT---CSS
T ss_pred             cccCC---------------------------------------cEEEEEECCCCCCEEEEEeCCCeEEEEECC---CCC
Confidence            22211                                       2333444432 2233334444444444221   112


Q ss_pred             eeEEEEeecCCceEEEEEcC--CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCe
Q psy4577         235 IEIEIKINHEGEVNRARYMP--QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGY  312 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~  312 (384)
                      ........|...+..++|+|  ++ .+|++|+.|++|++||++        .+  ..+..+.+|...|.+++|+|++ .+
T Consensus       175 ~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~--------~~--~~~~~~~~h~~~v~~~~~~p~~-~~  242 (304)
T 2ynn_A          175 PNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQ--------TK--SCVATLEGHMSNVSFAVFHPTL-PI  242 (304)
T ss_dssp             CSEEEECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETT--------TT--EEEEEEECCSSCEEEEEECSSS-SE
T ss_pred             ccceeccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCC--------CC--ccceeeCCCCCCEEEEEECCCC-CE
Confidence            22333446778899999987  55 499999999999999986        33  3567899999999999999998 69


Q ss_pred             EEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         313 LLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      |+||+.||+|++||+++++       .+.++..|...+++++|+|++...
T Consensus       243 l~s~s~Dg~i~iWd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  285 (304)
T 2ynn_A          243 IISGSEDGTLKIWNSSTYK-------VEKTLNVGLERSWCIATHPTGRKN  285 (304)
T ss_dssp             EEEEETTSCEEEEETTTCC-------EEEEECCSSSSEEEEEECTTCGGG
T ss_pred             EEEEcCCCeEEEEECCCCc-------eeeeccCCCccEEEEEECCCCCce
Confidence            9999999999999999998       999999999999999999998753

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.1e-38  Score=274.52  Aligned_cols=271  Identities=13%  Similarity=0.109  Sum_probs=184.2

Q ss_pred             CCCCCCCCceEEEeeC------CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecC
Q psy4577           1 VQWSPHNETILASSGT------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED   74 (384)
Q Consensus         1 v~fsp~~~~~lat~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D   74 (384)
                      |+|||||. +||+|+.      |++|++|+..+...          ...+.....+|...|++++|+|++. + ++++.|
T Consensus        48 v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~----------~~~~~~~~~~~~~~V~~~~~s~d~~-~-l~~s~d  114 (357)
T 4g56_B           48 VRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAP----------NESLCTAGVQTEAGVTDVAWVSEKG-I-LVASDS  114 (357)
T ss_dssp             EEECSSSC-EEEEEECSSSSSCCEEEEEESSCC-------------CGGGCSEEEECSSCEEEEEEETTTE-E-EEEETT
T ss_pred             EEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCc----------ceeEecccCCCCCCEEEEEEcCCCC-E-EEEECC
Confidence            57999997 8999997      77899998765211          1123334457888999999999987 5 478999


Q ss_pred             CeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccc
Q psy4577          75 NIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPF  150 (384)
Q Consensus        75 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~  150 (384)
                      |+|++||+.+++..                      ....+..+.+...|.+++|+|+++.++    |++|++||..+..
T Consensus       115 g~v~lWd~~~~~~~----------------------~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~  172 (357)
T 4g56_B          115 GAVELWEILEKESL----------------------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA  172 (357)
T ss_dssp             SCEEEC------------------------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred             CEEEEeecccccee----------------------EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence            99999999775211                      000111122367899999999999887    8999999998766


Q ss_pred             ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCc-ccccccccCcCCCCCCcc
Q psy4577         151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDA-QFDASNYDTDKGDFGGFG  229 (384)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~  229 (384)
                      ....+..+...  +.++.+.                                     +++. .+.....|.....|+...
T Consensus       173 ~~~~~~~h~~~--v~~v~~s-------------------------------------~~~~~~~~s~~~dg~v~~wd~~~  213 (357)
T 4g56_B          173 VLKSYNAHSSE--VNCVAAC-------------------------------------PGKDTIFLSCGEDGRILLWDTRK  213 (357)
T ss_dssp             EEEEECCCSSC--EEEEEEC-------------------------------------TTCSSCEEEEETTSCEEECCTTS
T ss_pred             EEEEEcCCCCC--EEEEEEc-------------------------------------cCCCceeeeeccCCceEEEECCC
Confidence            54444333221  2223332                                     2222 122223333333332211


Q ss_pred             CCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC
Q psy4577         230 SVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL  309 (384)
Q Consensus       230 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~  309 (384)
                      .  ..........|...+.+++|+|++..+|++|+.|+.|++||++        .+  ..+..+.+|...|++++|+|++
T Consensus       214 ~--~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~--------~~--~~~~~~~~~~~~v~~l~~sp~~  281 (357)
T 4g56_B          214 P--KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK--------NP--DSAQTSAVHSQNITGLAYSYHS  281 (357)
T ss_dssp             S--SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS--------CG--GGCEEECCCSSCEEEEEECSSS
T ss_pred             C--ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC--------CC--cEeEEEeccceeEEEEEEcCCC
Confidence            0  0111112234677899999999877799999999999999986        33  3566889999999999999998


Q ss_pred             CCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEec-CCCccccc
Q psy4577         310 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIER-LTKKADPV  365 (384)
Q Consensus       310 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~~  365 (384)
                      .++||||+.|++|+|||+++++       ++..+ +|.+.|++++||| ++..+++.
T Consensus       282 ~~~lasgs~D~~i~iwd~~~~~-------~~~~~-~H~~~V~~vafsP~d~~~l~s~  330 (357)
T 4g56_B          282 SPFLASISEDCTVAVLDADFSE-------VFRDL-SHRDFVTGVAWSPLDHSKFTTV  330 (357)
T ss_dssp             SCCEEEEETTSCEEEECTTSCE-------EEEEC-CCSSCEEEEEECSSSTTEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCc-------EeEEC-CCCCCEEEEEEeCCCCCEEEEE
Confidence            6789999999999999999886       66544 7999999999999 45555443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.7e-38  Score=290.50  Aligned_cols=326  Identities=15%  Similarity=0.172  Sum_probs=221.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-------ccccceEEEEEccCCCcEEEEEec
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-------GHTAKISDFSWNPNEPWVICSVSE   73 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-------gh~~~V~~l~~~~~~~~~l~s~s~   73 (384)
                      |+|+|+++ +||+|+.|++|+|||+.+              .+....+.       +|.+.|++++|+|+++ +|+|++.
T Consensus       196 v~fspdg~-~las~s~D~~i~lwd~~~--------------g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~  259 (611)
T 1nr0_A          196 VRYNPDGS-LFASTGGDGTIVLYNGVD--------------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASA  259 (611)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTT--------------CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEET
T ss_pred             EEECCCCC-EEEEEECCCcEEEEECCC--------------CcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeC
Confidence            47999997 899999999999999875              23444442       8999999999999999 8889999


Q ss_pred             CCeEEEEEcccCCCccch-------------------hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCce
Q psy4577          74 DNIMQILSVVCVEPFDDA-------------------VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT  134 (384)
Q Consensus        74 D~~i~vwd~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  134 (384)
                      |++|++||+.+++.....                   ......++.+++|+.........+.+|  ...|.+++|+|+++
T Consensus       260 D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh--~~~v~~l~~spdg~  337 (611)
T 1nr0_A          260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH--NKAITALSSSADGK  337 (611)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSS
T ss_pred             CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC--CCCEEEEEEeCCCC
Confidence            999999999876322110                   011123566788887665444556667  67899999999999


Q ss_pred             eee----cceeeeecccccccccee-ecccccccceeeeeccCCCCC------------------CC-C----cc--cee
Q psy4577         135 RVI----NEEYKIWKKNTPFLYDLV-MTHALEWPSLTAQWLPDVTRP------------------EG-K----DY--SIH  184 (384)
Q Consensus       135 ~~~----d~~v~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------~~-~----~~--~~~  184 (384)
                      .++    |+++++||+.+....... ..+..  ...++.+.++....                  .. .    ..  ...
T Consensus       338 ~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~--~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~  415 (611)
T 1nr0_A          338 TLFSADAEGHINSWDISTGISNRVFPDVHAT--MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL  415 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEECSSCSCSS--CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE
T ss_pred             EEEEEeCCCcEEEEECCCCceeeecccCCcc--eEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCc
Confidence            888    999999999765442221 11111  12222222211100                  00 0    00  000


Q ss_pred             EEEE---------eeec------cCC----CCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCC
Q psy4577         185 RLIL---------GTHT------SDE----QNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEG  245 (384)
Q Consensus       185 ~~~~---------~~~~------~~~----~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (384)
                      .+.+         ....      ...    .....+..+.+++++..+.....|...+.|....   +........+|..
T Consensus       416 ~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~---~~~~~~~~~~h~~  492 (611)
T 1nr0_A          416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG---ASVSEVKTIVHPA  492 (611)
T ss_dssp             EEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET---TEEEEEEEEECSS
T ss_pred             EEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC---CceeeeeccCCCC
Confidence            0000         0000      000    0011245678888888888888888777664321   1222222368999


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      .|++++|+|+++ +|++++.|++|++|++..       .+.......+.+|...|++++|+|+| ++||||+.|++|++|
T Consensus       493 ~v~~v~fspdg~-~las~s~d~~v~~w~~~~-------~~~~~~~~~~~~H~~~V~~v~fspdg-~~lasgs~D~~v~lW  563 (611)
T 1nr0_A          493 EITSVAFSNNGA-FLVATDQSRKVIPYSVAN-------NFELAHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVW  563 (611)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSCEEEEEGGG-------TTEESCCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred             ceEEEEECCCCC-EEEEEcCCCCEEEEEcCC-------CCceeeeeeeeecccceeEEEECCCC-CEEEEEECCCcEEEE
Confidence            999999999996 999999999999999862       02221111244599999999999999 799999999999999


Q ss_pred             ecCCCCCCCccccce-eeeecc-CCcEeEEEEecCCCccccc
Q psy4577         326 DINATPKENRVIDAK-TIFTGH-TAVVELELIERLTKKADPV  365 (384)
Q Consensus       326 d~~~~~~~~~~~~~~-~~~~~h-~~~v~~~~~sp~~~~~~~~  365 (384)
                      |+..+..      .+ ..+.+| ...|++++|+|++. +++.
T Consensus       564 ~~~~~~~------~~~~~~~~h~~~~v~~v~fs~d~~-l~s~  598 (611)
T 1nr0_A          564 NMNKPSD------HPIIIKGAHAMSSVNSVIWLNETT-IVSA  598 (611)
T ss_dssp             ETTCTTS------CCEEETTSSTTSCEEEEEEEETTE-EEEE
T ss_pred             ECCCccc------ccchhhccCcccCeeEEEEcCCCE-EEEe
Confidence            9987642      33 567789 89999999999998 5544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4e-37  Score=265.47  Aligned_cols=294  Identities=16%  Similarity=0.233  Sum_probs=200.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCe-eEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE-LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      |+|+|++. +||+|+.|++|+|||+....            .. ......+|.+.|++++|+|++. +|++|+.|+++++
T Consensus        22 l~~sp~g~-~las~~~D~~i~iw~~~~~~------------~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~s~D~~v~i   87 (345)
T 3fm0_A           22 LAWNPAGT-LLASCGGDRRIRIWGTEGDS------------WICKSVLSEGHQRTVRKVAWSPCGN-YLASASFDATTCI   87 (345)
T ss_dssp             EEECTTSS-CEEEEETTSCEEEEEEETTE------------EEEEEEECSSCSSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred             EEECCCCC-EEEEEcCCCeEEEEEcCCCc------------ceeeeeeccccCCcEEEEEECCCCC-EEEEEECCCcEEE
Confidence            57999997 89999999999999987521            11 1223468999999999999999 8899999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |++.....                      .....+.+|  ...|.+++|+|+++.++    |+++++|++........+
T Consensus        88 w~~~~~~~----------------------~~~~~~~~h--~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~  143 (345)
T 3fm0_A           88 WKKNQDDF----------------------ECVTTLEGH--ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV  143 (345)
T ss_dssp             EEECCC-E----------------------EEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             EEccCCCe----------------------EEEEEccCC--CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEE
Confidence            99865310                      011234455  67899999999999887    999999998654322211


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc-
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK-  234 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-  234 (384)
                      ....                                    .+...+..+.+++++..+.....|...+.|...   .+. 
T Consensus       144 ~~~~------------------------------------~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~---~~~~  184 (345)
T 3fm0_A          144 SVLN------------------------------------SHTQDVKHVVWHPSQELLASASYDDTVKLYREE---EDDW  184 (345)
T ss_dssp             EEEC------------------------------------CCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE---TTEE
T ss_pred             EEec------------------------------------CcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec---CCCE
Confidence            1100                                    000124444555555555555555554444221   111 


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCC-----CCCccceeeecC-CCCceEEEEeCCC
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDP-----NGECHPDLRLRG-HQKEGYGLSWNPS  308 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~-h~~~i~~~~~s~~  308 (384)
                      .....+.+|...|++++|+|+++ +|++|+.|++|+|||..........     ......+..+.+ |...|.+++|+|+
T Consensus       185 ~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~  263 (345)
T 3fm0_A          185 VCCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL  263 (345)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT
T ss_pred             EEEEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC
Confidence            23455678999999999999995 9999999999999997532211000     001122334555 8889999999999


Q ss_pred             CCCeEEEeeCCCcEEEEecCCCCCCCcc-cc-ceeeeeccCCcEeEEEEecCCCcccccccccccce
Q psy4577         309 LNGYLLSASDDHTICLWDINATPKENRV-ID-AKTIFTGHTAVVELELIERLTKKADPVCTLEKAKK  373 (384)
Q Consensus       309 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~-~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~  373 (384)
                      + .+|++++.|+.|++|+.......... .. ....+.+|...|++++|+|+++.+.+.|+.+...+
T Consensus       264 ~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~  329 (345)
T 3fm0_A          264 T-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVA  329 (345)
T ss_dssp             T-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred             C-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEE
Confidence            8 79999999999999999865421110 00 12234579999999999999976555555544433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1e-36  Score=263.63  Aligned_cols=273  Identities=15%  Similarity=0.173  Sum_probs=199.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|++. +||||+.|++|+|||..+              ......+..|...|.+++|+|++. +|++++.|+.+++|
T Consensus        70 ~~~s~d~~-~l~s~s~Dg~v~vWd~~~--------------~~~~~~~~~~~~~v~~~~~sp~g~-~lasg~~d~~i~v~  133 (354)
T 2pbi_B           70 MDWCKDKR-RIVSSSQDGKVIVWDSFT--------------TNKEHAVTMPCTWVMACAYAPSGC-AIACGGLDNKCSVY  133 (354)
T ss_dssp             EEECTTSS-EEEEEETTSEEEEEETTT--------------CCEEEEEECSSSCCCEEEECTTSS-EEEEESTTSEEEEE
T ss_pred             EEECCCCC-EEEEEeCCCeEEEEECCC--------------CCcceEEecCCCCEEEEEECCCCC-EEEEeeCCCCEEEE
Confidence            47999997 899999999999999875              345566778889999999999999 88999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      ++......                  ........+.+|  ...|.+++|+|++..++    |+++++||+........+.
T Consensus       134 ~~~~~~~~------------------~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~  193 (354)
T 2pbi_B          134 PLTFDKNE------------------NMAAKKKSVAMH--TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH  193 (354)
T ss_dssp             ECCCCTTC------------------CSGGGCEEEEEC--SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEeccccc------------------cccccceeeecc--CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence            98653110                  000111233445  67899999999998877    9999999998776554444


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+...  +.++.+.+.                                   +++..+.....|.....|+.    .....
T Consensus       194 ~h~~~--v~~~~~~~~-----------------------------------~~g~~l~sgs~Dg~v~~wd~----~~~~~  232 (354)
T 2pbi_B          194 GHGAD--VLCLDLAPS-----------------------------------ETGNTFVSGGCDKKAMVWDM----RSGQC  232 (354)
T ss_dssp             CCSSC--EEEEEECCC-----------------------------------SSCCEEEEEETTSCEEEEET----TTCCE
T ss_pred             CCCCC--eEEEEEEeC-----------------------------------CCCCEEEEEeCCCeEEEEEC----CCCcE
Confidence            44322  122222221                                   11222333334444433322    11123


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ...+..|...|++++|+|++. +|++|+.|++|++||++        ............+...+.+++|+|++ .+|++|
T Consensus       233 ~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~--------~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~g  302 (354)
T 2pbi_B          233 VQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLR--------ADREVAIYSKESIIFGASSVDFSLSG-RLLFAG  302 (354)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------TTEEEEEECCTTCCSCEEEEEECTTS-SEEEEE
T ss_pred             EEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECC--------CCcEEEEEcCCCcccceeEEEEeCCC-CEEEEE
Confidence            455678999999999999995 99999999999999996        33222222222334578999999998 799999


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      +.|++|++||+.+++       .+..+.+|...|++++|+|+++.+++...
T Consensus       303 ~~d~~i~vwd~~~~~-------~~~~l~~h~~~v~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          303 YNDYTINVWDVLKGS-------RVSILFGHENRVSTLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             ETTSCEEEEETTTCS-------EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             ECCCcEEEEECCCCc-------eEEEEECCCCcEEEEEECCCCCEEEEEcC
Confidence            999999999999888       88899999999999999999998776553

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=9.7e-36  Score=276.04  Aligned_cols=268  Identities=15%  Similarity=0.163  Sum_probs=194.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|+|+ +||+++ +++|+||++.+              ......+.+|.+.|++++|+|+|+ +||||+.|++|+||
T Consensus        24 ~~~spdg~-~l~~~~-~~~v~l~~~~~--------------~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lW   86 (611)
T 1nr0_A           24 LGNTPAGD-KIQYCN-GTSVYTVPVGS--------------LTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIW   86 (611)
T ss_dssp             CEECTTSS-EEEEEE-TTEEEEEETTC--------------SSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred             EeeCCCCC-EEEeCC-CCEEEEecCCC--------------cccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEe
Confidence            57999997 789887 57999999975              356677889999999999999999 88999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c----ceeeeecccccccc
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N----EEYKIWKKNTPFLY  152 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d----~~v~~w~~~~~~~~  152 (384)
                      |+..++.                      .+...+.+|  ..+|.+++|+|+++.++    +    +.+++|+....  .
T Consensus        87 d~~~~~~----------------------~~~~~~~~~--~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~--~  140 (611)
T 1nr0_A           87 DTTQTTH----------------------ILKTTIPVF--SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS--N  140 (611)
T ss_dssp             ESSSTTC----------------------CEEEEEECS--SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB--C
T ss_pred             ECCCCcc----------------------eeeEeeccc--CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC--c
Confidence            9865311                      011123344  56899999999999887    1    47889985321  1


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcc-cccccccCcCCCCCCccCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQ-FDASNYDTDKGDFGGFGSV  231 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~  231 (384)
                      ..+..+..                                       .+..+.+++++.. +.....|...+.|..    
T Consensus       141 ~~l~gh~~---------------------------------------~v~~v~f~p~~~~~l~s~s~D~~v~lwd~----  177 (611)
T 1nr0_A          141 GNLTGQAR---------------------------------------AMNSVDFKPSRPFRIISGSDDNTVAIFEG----  177 (611)
T ss_dssp             BCCCCCSS---------------------------------------CEEEEEECSSSSCEEEEEETTSCEEEEET----
T ss_pred             ceecCCCC---------------------------------------CceEEEECCCCCeEEEEEeCCCeEEEEEC----
Confidence            11122211                                       2444555554432 444455555554432    


Q ss_pred             CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec-------CCCCceEEEE
Q psy4577         232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR-------GHQKEGYGLS  304 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------~h~~~i~~~~  304 (384)
                      ........+.+|...|++++|+|+++ +||+|+.|++|++||+.        .+..  +..+.       +|.+.|.+++
T Consensus       178 ~~~~~~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~--------~g~~--~~~~~~~~~~~~~h~~~V~~v~  246 (611)
T 1nr0_A          178 PPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGV--------DGTK--TGVFEDDSLKNVAHSGSVFGLT  246 (611)
T ss_dssp             TTBEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------TCCE--EEECBCTTSSSCSSSSCEEEEE
T ss_pred             CCCeEeeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECC--------CCcE--eeeeccccccccccCCCEEEEE
Confidence            11223455678999999999999995 99999999999999986        3332  23342       7999999999


Q ss_pred             eCCCCCCeEEEeeCCCcEEEEecCCCCCCCcc------------------------------------ccceeeeeccCC
Q psy4577         305 WNPSLNGYLLSASDDHTICLWDINATPKENRV------------------------------------IDAKTIFTGHTA  348 (384)
Q Consensus       305 ~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~------------------------------------~~~~~~~~~h~~  348 (384)
                      |+|++ .+|+|++.|++|++||+++++.....                                    ..+...+.+|..
T Consensus       247 ~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~  325 (611)
T 1nr0_A          247 WSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK  325 (611)
T ss_dssp             ECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS
T ss_pred             ECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC
Confidence            99998 79999999999999999876411000                                    002345568999


Q ss_pred             cEeEEEEecCCCcccccc
Q psy4577         349 VVELELIERLTKKADPVC  366 (384)
Q Consensus       349 ~v~~~~~sp~~~~~~~~c  366 (384)
                      .|++++|+|+++.+++.+
T Consensus       326 ~v~~l~~spdg~~l~s~s  343 (611)
T 1nr0_A          326 AITALSSSADGKTLFSAD  343 (611)
T ss_dssp             CEEEEEECTTSSEEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEe
Confidence            999999999999877664

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.9e-35  Score=249.63  Aligned_cols=235  Identities=16%  Similarity=0.187  Sum_probs=175.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC--CCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~--~~~~l~s~s~D~~i~   78 (384)
                      ++|+|+++ +||+|+.|++|+|||+....            .+++.++.+|.+.|++++|+|+  +. +|+||+.|++|+
T Consensus        15 ~~~s~~g~-~las~s~D~~v~iw~~~~~~------------~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~s~s~D~~v~   80 (297)
T 2pm7_B           15 AVMDYYGK-RMATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVM   80 (297)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEEBCSSC------------BCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTTEEE
T ss_pred             EEECCCCC-EEEEEeCCCEEEEEecCCCC------------cEEEEEEccccCCeEEEEecCCCcCC-EEEEEcCCCEEE
Confidence            47999997 79999999999999997421            2556788999999999999864  66 889999999999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC--ceeee----cceeeeecccccccc
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD--VTRVI----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~----d~~v~~w~~~~~~~~  152 (384)
                      +||+.+++..                      ....+.+|  ...|.+++|+|+  +..++    |+++++|++......
T Consensus        81 iWd~~~~~~~----------------------~~~~~~~h--~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~  136 (297)
T 2pm7_B           81 IWKEENGRWS----------------------QIAVHAVH--SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT  136 (297)
T ss_dssp             EEEBSSSCBC----------------------CCEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred             EEEcCCCceE----------------------EEEEeecC--CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce
Confidence            9999764110                      00122234  567999999998  66665    889999987542110


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                      .                                                                               
T Consensus       137 ~-------------------------------------------------------------------------------  137 (297)
T 2pm7_B          137 S-------------------------------------------------------------------------------  137 (297)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             e-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             CceeEEEEeecCCceEEEEEcCCC------------CcEEEEEeCCCcEEEEecCCCCCCCCCCCC--ccceeeecCCCC
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQN------------PCVIATKTPSSDVLVFDYTKHPSKPDPNGE--CHPDLRLRGHQK  298 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~~------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~h~~  298 (384)
                          .....+|...|++++|+|++            ..+|++|+.|++|++||++        .+.  ......+.+|..
T Consensus       138 ----~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~--------~~~~~~~~~~~l~~H~~  205 (297)
T 2pm7_B          138 ----PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN--------SDAQTYVLESTLEGHSD  205 (297)
T ss_dssp             ----CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEE--------TTTTEEEEEEEECCCSS
T ss_pred             ----eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEc--------CCCceEEEEEEecCCCC
Confidence                11223567778888888752            2489999999999999996        222  224457889999


Q ss_pred             ceEEEEeCCCC--CCeEEEeeCCCcEEEEecCCCCCCCccccceeee--eccCCcEeEEEEecCCCcccccccc
Q psy4577         299 EGYGLSWNPSL--NGYLLSASDDHTICLWDINATPKENRVIDAKTIF--TGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       299 ~i~~~~~s~~~--~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      .|.+++|+|++  ..+||||+.|++|+|||+++....  .  ....+  .+|...|++++|+|+++.+++.+..
T Consensus       206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~--~--~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D  275 (297)
T 2pm7_B          206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP--W--KKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  275 (297)
T ss_dssp             CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC--C--EEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred             ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc--c--ceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence            99999999984  269999999999999999875310  0  11222  4688999999999999988876543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.3e-36  Score=265.80  Aligned_cols=276  Identities=14%  Similarity=0.195  Sum_probs=196.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|+++ +||+|+.|++|+|||+.+              .+....+.+|...|.+++|+|+++ +|++|+.|+++++|
T Consensus        72 ~~~sp~~~-~l~s~s~D~~v~iWd~~~--------------~~~~~~~~~h~~~v~~~~~s~~g~-~las~~~d~~v~iw  135 (380)
T 3iz6_a           72 LDWTPEKN-WIVSASQDGRLIVWNALT--------------SQKTHAIKLHCPWVMECAFAPNGQ-SVACGGLDSACSIF  135 (380)
T ss_dssp             EEECTTSS-CEEEEETTSEEEEEETTT--------------TEEEEEEECCCTTCCCCEECTTSS-EEEECCSSSCCEEE
T ss_pred             EEEcCCCC-EEEEEeCCCeEEEEECCC--------------CccceEEecCCCCEEEEEECCCCC-EEEEeeCCCcEEEE
Confidence            47999997 799999999999999976              467778899999999999999999 88999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCce-eee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT-RVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      ++......                 .....+...+.+|  ...+.++.|+|++. .++    |+++++||+.+......+
T Consensus       136 ~~~~~~~~-----------------~~~~~~~~~~~gh--~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~  196 (380)
T 3iz6_a          136 NLSSQADR-----------------DGNMPVSRVLTGH--KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF  196 (380)
T ss_dssp             ECCCCSSC-----------------CCSSTTCCBCCCC--SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE
T ss_pred             ECCCCccc-----------------cCCccceeeccCC--CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe
Confidence            99763110                 0011122345566  66788999999754 354    999999999776543322


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCC-CCcccccccccCcCCCCCCccCCCCc
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPN-EDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      ......                                  .+...+..+.+.+ ++..+.....|...+.|+...   ..
T Consensus       197 ~~~~~~----------------------------------~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~---~~  239 (380)
T 3iz6_a          197 GSEFPS----------------------------------GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI---TS  239 (380)
T ss_dssp             CCCSSS----------------------------------SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT---TC
T ss_pred             ecccCC----------------------------------CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC---CC
Confidence            110000                                  0001123333322 223333344454444443210   11


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC-------CCceEEEEeCC
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH-------QKEGYGLSWNP  307 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~i~~~~~s~  307 (384)
                      .....+.+|.+.|++++|+|++. +|++|+.||+|++||++        .+.  .+..+..+       ...|++++|+|
T Consensus       240 ~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~--------~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~  308 (380)
T 3iz6_a          240 RAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMR--------TGH--QLQVYNREPDRNDNELPIVTSVAFSI  308 (380)
T ss_dssp             CCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETT--------TTE--EEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred             cceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECC--------CCc--EEEEecccccccccccCceEEEEECC
Confidence            22455678999999999999995 99999999999999997        333  22333332       23589999999


Q ss_pred             CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeee----eccCCcEeEEEEecCCCccccccc
Q psy4577         308 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF----TGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       308 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      +| .+|++|+.||.|++||+..++       .+..+    .+|.+.|++++|+|++..+++.+.
T Consensus       309 ~g-~~l~~g~~dg~i~vwd~~~~~-------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  364 (380)
T 3iz6_a          309 SG-RLLFAGYSNGDCYVWDTLLAE-------MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW  364 (380)
T ss_dssp             SS-SEEEEECTTSCEEEEETTTCC-------EEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred             CC-CEEEEEECCCCEEEEECCCCc-------eEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence            99 799999999999999999887       66555    679999999999999998776543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.3e-36  Score=258.72  Aligned_cols=237  Identities=13%  Similarity=0.132  Sum_probs=170.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|||. +|++++ |+++++||.....-.... ..  ...........|...|++++|+|++.  |++|+.||+|+||
T Consensus        36 ~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~~~~~~-~~--~~~~~~~~~~~~~~~v~~~~~s~d~~--l~~~s~dg~v~lW  108 (344)
T 4gqb_B           36 ARYRSDGA-LLLGAS-SLSGRCWAGSLWLFKDPC-AA--PNEGFCSAGVQTEAGVADLTWVGERG--ILVASDSGAVELW  108 (344)
T ss_dssp             EEECTTSC-EEEEEE-CCSSSCCCEEEEEESSGG-GT--TCGGGCSEEEEESSCEEEEEEETTTE--EEEEETTSEEEEE
T ss_pred             EEECCCCC-EEEEEe-CCceEEeeceeeeecccc-cc--CCcceeeeeeccCCCEEEEEEeCCCe--EEEEECCCEEEEE
Confidence            47999997 788777 778888874310000000 00  00011112234667899999999865  5699999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.+++...             .       ......+|  ...|.+++|+|+++.++    |++|++||+.+...     
T Consensus       109 d~~~~~~~~-------------~-------~~~~~~~H--~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~-----  161 (344)
T 4gqb_B          109 ELDENETLI-------------V-------SKFCKYEH--DDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV-----  161 (344)
T ss_dssp             EECTTSSCE-------------E-------EEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----
T ss_pred             eccCCCcee-------------E-------eeccccCC--CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-----
Confidence            998752210             0       10122344  77899999999999888    89999998754322     


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (344)
T 4gqb_B          162 --------------------------------------------------------------------------------  161 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      +..+.+|.+.|++++|+|++..+|++|+.|++|++||++        .+..........|...+++++|+|++..+|++|
T Consensus       162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~--------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg  233 (344)
T 4gqb_B          162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR--------CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG  233 (344)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT--------SSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred             EEEEcCcCCceEEEEecCCCCCceeeecccccccccccc--------ccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence            223347899999999999987799999999999999997        343333223345667899999999765789999


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      +.||+|++||+++++       ++.++.+|...|++++|+|++..+...|
T Consensus       234 ~~dg~v~~wd~~~~~-------~~~~~~~h~~~v~~v~fsp~g~~~lasg  276 (344)
T 4gqb_B          234 DENGTVSLVDTKSTS-------CVLSSAVHSQCVTGLVFSPHSVPFLASL  276 (344)
T ss_dssp             ETTSEEEEEESCC---------CCEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred             ccCCcEEEEECCCCc-------EEEEEcCCCCCEEEEEEccCCCeEEEEE
Confidence            999999999999998       9999999999999999999997544443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.6e-35  Score=270.48  Aligned_cols=280  Identities=20%  Similarity=0.369  Sum_probs=211.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+++ +|++++.|+.|++||...               +.+..+.+|...|.+++|+|++. +|++++.|++|++|
T Consensus       268 v~~~~d~~-~l~~~~~d~~i~~w~~~~---------------~~~~~~~~h~~~v~~~~~~~~~~-~l~t~~~d~~i~~w  330 (577)
T 2ymu_A          268 VAFRPDGQ-TIASASDDKTVKLWNRNG---------------QLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLW  330 (577)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTS---------------CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred             EEEcCCCC-EEEEEeCCCEEEEEeCCC---------------cEEEEEecCCCCeEEEEECCCCC-EEEEEeCCCeEEEE
Confidence            46899997 799999999999999764               66778899999999999999999 88899999999999


Q ss_pred             EcccCCCcc---------------ch--hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cc
Q psy4577          81 SVVCVEPFD---------------DA--VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NE  139 (384)
Q Consensus        81 d~~~~~~~~---------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~  139 (384)
                      |....+...               +.  ......++.+++|+.....+ ..+.+|  ...|.+++|+|+++.++    |+
T Consensus       331 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~-~~~~~~--~~~v~~~~~s~dg~~l~~~~~d~  407 (577)
T 2ymu_A          331 NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTLTGH--SSSVRGVAFSPDGQTIASASDDK  407 (577)
T ss_dssp             ETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEE-EEEECC--SSCEEEEEECTTSSCEEEEETTS
T ss_pred             eCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEE-EEecCC--CCCeEEEEECCCCCEEEEEeCCC
Confidence            986542100               00  01112356788998765533 455556  67899999999999887    89


Q ss_pred             eeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccccc
Q psy4577         140 EYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYD  219 (384)
Q Consensus       140 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d  219 (384)
                      .+++|+.....+ ..+..+..                                       .+..+.+++++..+.....|
T Consensus       408 ~v~~~~~~~~~~-~~~~~~~~---------------------------------------~v~~~~~s~d~~~l~~~~~d  447 (577)
T 2ymu_A          408 TVKLWNRNGQLL-QTLTGHSS---------------------------------------SVWGVAFSPDDQTIASASDD  447 (577)
T ss_dssp             EEEEECTTCCEE-EEEECCSS---------------------------------------CEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEeCCCCEE-EEecCCCC---------------------------------------CeEEEEECCCCCEEEEEcCC
Confidence            999999654322 22222211                                       13334444444444444444


Q ss_pred             CcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCc
Q psy4577         220 TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE  299 (384)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  299 (384)
                      .....|.    ..+. ......+|...|++++|+|+++ +||+++.|+.|++||.         ++.  .+..+.+|...
T Consensus       448 ~~v~~w~----~~~~-~~~~~~~~~~~v~~~~~spd~~-~las~~~d~~i~iw~~---------~~~--~~~~~~~h~~~  510 (577)
T 2ymu_A          448 KTVKLWN----RNGQ-LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR---------NGQ--LLQTLTGHSSS  510 (577)
T ss_dssp             SEEEEEE----TTSC-EEEEEECCSSCEEEEEECTTSC-EEEEEETTSEEEEEET---------TSC--EEEEEECCSSC
T ss_pred             CEEEEEE----CCCC-EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEcC---------CCC--EEEEEeCCCCC
Confidence            4443332    1222 2456678999999999999996 9999999999999996         333  45688999999


Q ss_pred             eEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         300 GYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       300 i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      |++++|+|++ ++||+++.||.|+|||. +++       ++.++.+|.+.|++++|+||++.+++..
T Consensus       511 v~~l~~s~dg-~~l~s~~~dg~v~lwd~-~~~-------~~~~~~~h~~~v~~~~fs~dg~~l~s~~  568 (577)
T 2ymu_A          511 VRGVAFSPDG-QTIASASDDKTVKLWNR-NGQ-------LLQTLTGHSSSVWGVAFSPDGQTIASAS  568 (577)
T ss_dssp             EEEEEECTTS-SCEEEEETTSEEEEECT-TSC-------EEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             EEEEEEcCCC-CEEEEEECcCEEEEEeC-CCC-------EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            9999999999 79999999999999996 455       8899999999999999999999887654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.7e-34  Score=246.24  Aligned_cols=282  Identities=15%  Similarity=0.170  Sum_probs=188.5

Q ss_pred             CC-CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEc
Q psy4577           4 SP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSV   82 (384)
Q Consensus         4 sp-~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~   82 (384)
                      +| +++ +||||+.|++|+|||+......       .........+.+|...|++++|+|++. +|++++.|++|++||+
T Consensus        35 ~~~d~~-~l~sgs~D~~v~iWd~~~~~~~-------~~~~~~~~~l~~h~~~V~~~~~~~~~~-~l~s~s~D~~v~lwd~  105 (343)
T 2xzm_R           35 ENEDSP-VLISGSRDKTVMIWKLYEEEQN-------GYFGIPHKALTGHNHFVSDLALSQENC-FAISSSWDKTLRLWDL  105 (343)
T ss_dssp             TTCCCC-EEEEEETTSCEEEEEECSSCCS-------SBSEEEEEEECCCSSCEEEEEECSSTT-EEEEEETTSEEEEEET
T ss_pred             cCCCCC-EEEEEcCCCEEEEEECCcCCcc-------cccccccchhccCCCceEEEEECCCCC-EEEEEcCCCcEEEEEC
Confidence            55 665 8999999999999999752110       001245677899999999999999999 8889999999999999


Q ss_pred             ccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecc
Q psy4577          83 VCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTH  158 (384)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~  158 (384)
                      .+++.             +           ..+.+|  ...|.+++|+|+++.++    |+++++||+............
T Consensus       106 ~~~~~-------------~-----------~~~~~h--~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  159 (343)
T 2xzm_R          106 RTGTT-------------Y-----------KRFVGH--QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE  159 (343)
T ss_dssp             TSSCE-------------E-----------EEEECC--CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTT
T ss_pred             CCCcE-------------E-----------EEEcCC--CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeeccc
Confidence            77511             1           133345  67899999999999887    999999998643322111111


Q ss_pred             cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEE
Q psy4577         159 ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE  238 (384)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  238 (384)
                      .......++.|.|+.......                           .+....+.....|.....|..     ......
T Consensus       160 ~~~~~v~~~~~~~~~~~~~~~---------------------------~~~~~~l~s~~~d~~i~iwd~-----~~~~~~  207 (343)
T 2xzm_R          160 NHSDWVSCVRYSPIMKSANKV---------------------------QPFAPYFASVGWDGRLKVWNT-----NFQIRY  207 (343)
T ss_dssp             SCSSCEEEEEECCCCCSCSCC---------------------------CSSCCEEEEEETTSEEEEEET-----TTEEEE
T ss_pred             CCCceeeeeeecccccccccc---------------------------CCCCCEEEEEcCCCEEEEEcC-----CCceeE
Confidence            111123344555443211000                           000111222233333333321     112244


Q ss_pred             EEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC
Q psy4577         239 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       239 ~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      ...+|...|++++|+|+++ +|++|+.||.|++||++.        . ..+...+ .+...|.+++|+|++ .+|+ ++.
T Consensus       208 ~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~--------~-~~~~~~~-~~~~~v~~v~~sp~~-~~la-~~~  274 (343)
T 2xzm_R          208 TFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILN--------L-TYPQREF-DAGSTINQIAFNPKL-QWVA-VGT  274 (343)
T ss_dssp             EEECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSC--------C-SSCSEEE-ECSSCEEEEEECSSS-CEEE-EEE
T ss_pred             EEcCccccceEEEECCCCC-EEEEEcCCCeEEEEECCC--------C-cccceee-cCCCcEEEEEECCCC-CEEE-EEC
Confidence            5678999999999999995 999999999999999842        1 1122233 245579999999997 5665 556


Q ss_pred             CCcEEEEecCCCCCCCccccceeee-----------eccCCcEeEEEEecCCCcccccccccc
Q psy4577         319 DHTICLWDINATPKENRVIDAKTIF-----------TGHTAVVELELIERLTKKADPVCTLEK  370 (384)
Q Consensus       319 Dg~i~iwd~~~~~~~~~~~~~~~~~-----------~~h~~~v~~~~~sp~~~~~~~~c~~~~  370 (384)
                      |+.|++||+.+.+..     .+..+           .+|...|++++|+|+++.+++.+....
T Consensus       275 d~~v~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~  332 (343)
T 2xzm_R          275 DQGVKIFNLMTQSKA-----PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV  332 (343)
T ss_dssp             SSCEEEEESSSCCSC-----SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSE
T ss_pred             CCCEEEEEeCCCCCC-----ceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCce
Confidence            889999999876521     11122           378889999999999998887665443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-34  Score=254.05  Aligned_cols=264  Identities=16%  Similarity=0.238  Sum_probs=181.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecc------------------cccceEEEEEcc
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG------------------HTAKISDFSWNP   62 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~g------------------h~~~V~~l~~~~   62 (384)
                      ++|+|+|+ +||+|+ |++++||++.+.              +.+..+.+                  +...|++++|+|
T Consensus        70 v~fspdg~-~la~g~-~~~v~i~~~~~g--------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~  133 (393)
T 1erj_A           70 VKFSNDGE-YLATGC-NKTTQVYRVSDG--------------SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP  133 (393)
T ss_dssp             EEECTTSS-EEEEEC-BSCEEEEETTTC--------------CEEEEECC-----------------CCCCBEEEEEECT
T ss_pred             EEECCCCC-EEEEEc-CCcEEEEEecCC--------------CEEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence            47999997 799876 789999999762              22233322                  233599999999


Q ss_pred             CCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c
Q psy4577          63 NEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N  138 (384)
Q Consensus        63 ~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d  138 (384)
                      +++ +|++|+.|++|++||+.+++             .+           ..+.+|  ...|.+++|+|++..++    |
T Consensus       134 dg~-~l~s~~~d~~i~iwd~~~~~-------------~~-----------~~~~~h--~~~v~~~~~~p~~~~l~s~s~d  186 (393)
T 1erj_A          134 DGK-FLATGAEDRLIRIWDIENRK-------------IV-----------MILQGH--EQDIYSLDYFPSGDKLVSGSGD  186 (393)
T ss_dssp             TSS-EEEEEETTSCEEEEETTTTE-------------EE-----------EEECCC--SSCEEEEEECTTSSEEEEEETT
T ss_pred             CCC-EEEEEcCCCeEEEEECCCCc-------------EE-----------EEEccC--CCCEEEEEEcCCCCEEEEecCC
Confidence            999 88899999999999997741             11           123345  66799999999998887    9


Q ss_pred             ceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccc
Q psy4577         139 EEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNY  218 (384)
Q Consensus       139 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  218 (384)
                      +++++||+.+......+..   ......+.+.|.                                    ++..+.....
T Consensus       187 ~~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~------------------------------------~~~~l~~~s~  227 (393)
T 1erj_A          187 RTVRIWDLRTGQCSLTLSI---EDGVTTVAVSPG------------------------------------DGKYIAAGSL  227 (393)
T ss_dssp             SEEEEEETTTTEEEEEEEC---SSCEEEEEECST------------------------------------TCCEEEEEET
T ss_pred             CcEEEEECCCCeeEEEEEc---CCCcEEEEEECC------------------------------------CCCEEEEEcC
Confidence            9999999976544322211   111222333221                                    2222222333


Q ss_pred             cCcCCCCCCccCCCCcee------EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCC--CCCccce
Q psy4577         219 DTDKGDFGGFGSVSGKIE------IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDP--NGECHPD  290 (384)
Q Consensus       219 d~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~  290 (384)
                      |.....|+..   .+...      .....+|...|.+++|+|+++ +|++|+.|+.|++||++........  .......
T Consensus       228 d~~v~iwd~~---~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~  303 (393)
T 1erj_A          228 DRAVRVWDSE---TGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE  303 (393)
T ss_dssp             TSCEEEEETT---TCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEE
T ss_pred             CCcEEEEECC---CCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcce
Confidence            3333333210   01110      011247899999999999995 9999999999999999742211000  0111234


Q ss_pred             eeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecC
Q psy4577         291 LRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERL  358 (384)
Q Consensus       291 ~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  358 (384)
                      ..+.+|...|.+++|+|++ .+|++|+.|++|++||+++++       ++..+.+|...|++++|+|.
T Consensus       304 ~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~-------~~~~l~~h~~~v~~v~~~~~  363 (393)
T 1erj_A          304 VTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGN-------PLLMLQGHRNSVISVAVANG  363 (393)
T ss_dssp             EEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSS
T ss_pred             EEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCe-------EEEEECCCCCCEEEEEecCC
Confidence            5778999999999999998 799999999999999999998       89999999999999999874

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.1e-34  Score=245.26  Aligned_cols=263  Identities=21%  Similarity=0.365  Sum_probs=194.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+++ +||+|+.|+.|+||++.+              .+....+.+|...|.+++|+|+++ +|++++.|++|++|
T Consensus        29 ~~~s~~~~-~l~s~~~dg~i~iw~~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vw   92 (312)
T 4ery_A           29 VKFSPNGE-WLASSSADKLIKIWGAYD--------------GKFEKTISGHKLGISDVAWSSDSN-LLVSASDDKTLKIW   92 (312)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred             EEECCCCC-EEEEeeCCCeEEEEeCCC--------------cccchhhccCCCceEEEEEcCCCC-EEEEECCCCEEEEE
Confidence            47999997 899999999999999876              356677889999999999999999 88899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.+++.             +           ..+.+|  ...|.+++|+|+++.++    |+.+++||+........+.
T Consensus        93 d~~~~~~-------------~-----------~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  146 (312)
T 4ery_A           93 DVSSGKC-------------L-----------KTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP  146 (312)
T ss_dssp             ETTTCCE-------------E-----------EEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ECCCCcE-------------E-----------EEEcCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence            9977411             1           122334  56788999999998887    8999999997765433332


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+..  +                                     +..+.+++++..+.....|.....|+.   ..+...
T Consensus       147 ~~~~--~-------------------------------------v~~~~~~~~~~~l~~~~~d~~i~~wd~---~~~~~~  184 (312)
T 4ery_A          147 AHSD--P-------------------------------------VSAVHFNRDGSLIVSSSYDGLCRIWDT---ASGQCL  184 (312)
T ss_dssp             CCSS--C-------------------------------------EEEEEECTTSSEEEEEETTSCEEEEET---TTCCEE
T ss_pred             CCCC--c-------------------------------------EEEEEEcCCCCEEEEEeCCCcEEEEEC---CCCcee
Confidence            2211  1                                     233333333333333344443333321   112222


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceE--EEEeC-CCCCCeE
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGY--GLSWN-PSLNGYL  313 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~--~~~~s-~~~~~~l  313 (384)
                      ......+...+..++|+|+++ +|++++.|+.|++||++        .+  ..+..+.+|...+.  ...++ +++ .+|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~l  252 (312)
T 4ery_A          185 KTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYS--------KG--KCLKTYTGHKNEKYCIFANFSVTGG-KWI  252 (312)
T ss_dssp             EEECCSSCCCEEEEEECTTSS-EEEEEETTTEEEEEETT--------TT--EEEEEECSSCCSSSCCCEEEECSSS-CEE
T ss_pred             eEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECC--------CC--cEEEEEEecCCceEEEEEEEEeCCC-cEE
Confidence            222335667899999999995 99999999999999986        33  34557777866433  23444 555 799


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         314 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      ++|+.||.|++||+++++       .+..+.+|...|.+++|+|+++.+++.+
T Consensus       253 ~sg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~p~~~~l~s~~  298 (312)
T 4ery_A          253 VSGSEDNLVYIWNLQTKE-------IVQKLQGHTDVVISTACHPTENIIASAA  298 (312)
T ss_dssp             EECCTTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred             EEECCCCEEEEEECCCch-------hhhhhhccCCcEEEEeecCcCCceEEEE
Confidence            999999999999999988       8999999999999999999999877654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-34  Score=246.79  Aligned_cols=280  Identities=16%  Similarity=0.220  Sum_probs=184.7

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEe-cc-cccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GG-HTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~g-h~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      +|+|+   +||+|+.|++|+|||+....            ......+ .+ |.+.|++++|+|+++ +|++|+.|++|++
T Consensus        21 ~~s~~---~las~~~D~~i~lw~~~~~~------------~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~i   84 (330)
T 2hes_X           21 DFSQG---ILATGSTDRKIKLVSVKYDD------------FTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSI   84 (330)
T ss_dssp             EEETT---EEEEEESSSCEEEEECSSSC------------CEEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred             ccCCC---EEEEEcCCCEEEEEEecCCC------------eEEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCcEEE
Confidence            46665   79999999999999997521            2445555 44 999999999999999 8899999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccc-cccc-
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTP-FLYD-  153 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~-~~~~-  153 (384)
                      ||+.....                 ..........+.+|  ...|.+++|+|+++.++    |+++++||+... .... 
T Consensus        85 w~~~~~~~-----------------~~~~~~~~~~~~~h--~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~  145 (330)
T 2hes_X           85 WAKEESAD-----------------RTFEMDLLAIIEGH--ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC  145 (330)
T ss_dssp             EEC------------------------CCCEEEEEEC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEE
T ss_pred             EEcccCcC-----------------ccccceeEEEEcCC--CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEE
Confidence            99864210                 00001112244556  67899999999999888    999999998432 1111 


Q ss_pred             --eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC
Q psy4577         154 --LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV  231 (384)
Q Consensus       154 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  231 (384)
                        .+..+.                                       ..+..+.+++++..+.....|...+.|....  
T Consensus       146 ~~~~~~h~---------------------------------------~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~--  184 (330)
T 2hes_X          146 ISVLQEHS---------------------------------------QDVKHVIWHPSEALLASSSYDDTVRIWKDYD--  184 (330)
T ss_dssp             EEEECCCS---------------------------------------SCEEEEEECSSSSEEEEEETTSCEEEEEEET--
T ss_pred             EEEeccCC---------------------------------------CceEEEEECCCCCEEEEEcCCCeEEEEECCC--
Confidence              111111                                       1244555555555555556666655553211  


Q ss_pred             CCceeEEEEeecCCceEEEEEcCC--CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCC
Q psy4577         232 SGKIEIEIKINHEGEVNRARYMPQ--NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPS  308 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~  308 (384)
                      .....+..+.+|.+.|.+++|+|+  + .+|++|+.|++|++||++......  .........+.+ |...|.+++|+++
T Consensus       185 ~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~s~~  261 (330)
T 2hes_X          185 DDWECVAVLNGHEGTVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDD--QQEWVCEAILPDVHKRQVYNVAWGFN  261 (330)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTTS--CEEEEEEEECCSCCSSCEEEEEECTT
T ss_pred             CCeeEEEEccCCCCcEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCccc--cceeEEeeecccccccceEEEEEcCC
Confidence            011234566789999999999998  5 489999999999999986321100  001122334554 8999999999976


Q ss_pred             CCCeEEEeeCCCcEEEEecCCCCCCCcccccee-eeeccCC-cEeEEEEec--CCCccccccc
Q psy4577         309 LNGYLLSASDDHTICLWDINATPKENRVIDAKT-IFTGHTA-VVELELIER--LTKKADPVCT  367 (384)
Q Consensus       309 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~h~~-~v~~~~~sp--~~~~~~~~c~  367 (384)
                        .+|++++.||+|+|||..+++.     ..+. .+.+|.. .|++++|+|  ++..+++.+.
T Consensus       262 --~~l~s~~~dg~v~iw~~~~~~~-----~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~  317 (330)
T 2hes_X          262 --GLIASVGADGVLAVYEEVDGEW-----KVFAKRALCHGVYEINVVKWLELNGKTILATGGD  317 (330)
T ss_dssp             --SCEEEEETTSCEEEEEEETTEE-----EEEEEESCTTTTSCEEEEEEC-----CCEEEEET
T ss_pred             --CEEEEEeCCCEEEEEEcCCCce-----EEEeccccccccceEEEEEEecCCCceEEEEecC
Confidence              3899999999999999976530     0232 3457887 899999999  5666655543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.2e-35  Score=251.41  Aligned_cols=237  Identities=14%  Similarity=0.167  Sum_probs=170.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC--CCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~--~~~~l~s~s~D~~i~   78 (384)
                      |+|+|++. +||+|+.|++|+|||+.+..            ..++..+.+|.+.|++++|+|+  +. +|+||+.|++|+
T Consensus        19 v~~s~~g~-~lasgs~D~~v~lwd~~~~~------------~~~~~~l~gH~~~V~~v~~~~~~~~~-~l~s~s~D~~v~   84 (316)
T 3bg1_A           19 AQMDYYGT-RLATCSSDRSVKIFDVRNGG------------QILIADLRGHEGPVWQVAWAHPMYGN-ILASCSYDRKVI   84 (316)
T ss_dssp             EEECGGGC-EEEEEETTTEEEEEEEETTE------------EEEEEEEECCSSCEEEEEECCGGGSS-CEEEEETTSCEE
T ss_pred             eeEcCCCC-EEEEEeCCCeEEEEEecCCC------------cEEEEEEcCCCccEEEEEeCCCCCCC-EEEEEECCCEEE
Confidence            47999997 79999999999999997521            2356788999999999999863  66 788999999999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC--ceeee----cceeeeecccccccc
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD--VTRVI----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~----d~~v~~w~~~~~~~~  152 (384)
                      +||+.+++..                      ....+.+|  ...|.+++|+|+  +..++    |+++++|+.......
T Consensus        85 iWd~~~~~~~----------------------~~~~~~~h--~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~  140 (316)
T 3bg1_A           85 IWREENGTWE----------------------KSHEHAGH--DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW  140 (316)
T ss_dssp             EECCSSSCCC----------------------EEEEECCC--SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred             EEECCCCcce----------------------EEEEccCC--CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence            9999764110                      00122344  567999999998  66665    899999988653211


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                      ......                                                                          
T Consensus       141 ~~~~~~--------------------------------------------------------------------------  146 (316)
T 3bg1_A          141 EVKKIN--------------------------------------------------------------------------  146 (316)
T ss_dssp             EECCBT--------------------------------------------------------------------------
T ss_pred             ceeeee--------------------------------------------------------------------------
Confidence            100000                                                                          


Q ss_pred             CceeEEEEeecCCceEEEEEcCC-----------------CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQ-----------------NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG  295 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~-----------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  295 (384)
                              .+|...|.+++|+|+                 + .+|++|+.|+.|++||++.       .+...++..+.+
T Consensus       147 --------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~D~~v~lWd~~~-------~~~~~~~~~l~~  210 (316)
T 3bg1_A          147 --------NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYI-KRFASGGCDNLIKLWKEEE-------DGQWKEEQKLEA  210 (316)
T ss_dssp             --------TSSSSCBCCCEECCCCCC------CCSCCCCCC-CBEECCBTTSBCCEEEECT-------TSCEEEEECCBC
T ss_pred             --------ccccCCcceEEEccccCCccccccccccCcccc-ceEEEecCCCeEEEEEeCC-------CCccceeeeccc
Confidence                    012222333333332                 3 4899999999999999852       122235667899


Q ss_pred             CCCceEEEEeCCCC---CCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         296 HQKEGYGLSWNPSL---NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       296 h~~~i~~~~~s~~~---~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      |..+|.+++|+|++   ..+|+||+.|++|++||+++......   ....+.+|...|++++|+|+++.+++.+..
T Consensus       211 h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~---~~~~~~~~~~~v~~v~~sp~g~~las~~~D  283 (316)
T 3bg1_A          211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTW---SPKLLHKFNDVVWHVSWSITANILAVSGGD  283 (316)
T ss_dssp             CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCC---BCCEEEECSSCEEEEEECTTTCCEEEEESS
T ss_pred             CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccch---hhhhhhcCCCcEEEEEEcCCCCEEEEEcCC
Confidence            99999999999985   25899999999999999986321000   234456789999999999999988776543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.2e-34  Score=264.05  Aligned_cols=292  Identities=19%  Similarity=0.305  Sum_probs=211.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|||||+ +||+|+.|++|+|||...               +++.++.+|.+.|++|+|+|+++ +||+++.|++|++|
T Consensus        22 ~a~spdg~-~las~~~d~~v~iWd~~~---------------~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vW   84 (577)
T 2ymu_A           22 VAFSPDGQ-TIASASDDKTVKLWNRNG---------------QLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLW   84 (577)
T ss_dssp             EEECTTSS-CEEEEETTSEEEEECTTS---------------CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred             EEECCCCC-EEEEEeCCCEEEEEECCC---------------CEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEE
Confidence            57999997 799999999999999643               67788999999999999999999 88999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |....              .+           ..+.+|  ...|.+++|+|+++.++    |+.+++|+......... .
T Consensus        85 d~~~~--------------~~-----------~~~~~~--~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~-~  136 (577)
T 2ymu_A           85 NRNGQ--------------LL-----------QTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL-T  136 (577)
T ss_dssp             ETTSC--------------EE-----------EEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEE-C
T ss_pred             ECCCC--------------EE-----------EEEECC--CCCEEEEEECCCCCEEEEEcCCCceeecccccceeeec-c
Confidence            97441              11           123344  56799999999999887    89999999765433221 1


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeecc-----CCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTS-----DEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV  231 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  231 (384)
                      .+  ..+.....+.++............. .+.....     .......+..+.+.+++..+.....|.....|..    
T Consensus       137 ~~--~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~----  209 (577)
T 2ymu_A          137 GH--SSSVWGVAFSPDGQTIASASDDKTV-KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR----  209 (577)
T ss_dssp             CC--SSCEEEEEECTTSSCEEEEETTSEE-EEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT----
T ss_pred             CC--CCceeeeeeecCCccceecccccce-eccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC----
Confidence            11  1123334444443211000000000 0000000     0011123556667777776666666666555532    


Q ss_pred             CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC
Q psy4577         232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG  311 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~  311 (384)
                      .+. ......+|...|.+++|+|+++ +|++++.|+.|++||..         +.  .+..+.+|...|++++|+|++ .
T Consensus       210 ~~~-~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~i~~w~~~---------~~--~~~~~~~~~~~v~~v~~~~d~-~  275 (577)
T 2ymu_A          210 NGQ-LLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRN---------GQ--LLQTLTGHSSSVNGVAFRPDG-Q  275 (577)
T ss_dssp             TSC-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTT---------SC--EEEEECCCSSCEEEEEECTTS-S
T ss_pred             CCc-EEEEEecCCCCEEEEEECCCCC-EEEEEeCCCEEEEEeCC---------CC--EEEEEecCCCCEEEEEEcCCC-C
Confidence            222 2455678999999999999995 89999999999999963         32  456788999999999999998 7


Q ss_pred             eEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         312 YLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       312 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      +|++++.|+.|++||... +       .+..+.+|...|++++|+|+++.+++.+
T Consensus       276 ~l~~~~~d~~i~~w~~~~-~-------~~~~~~~h~~~v~~~~~~~~~~~l~t~~  322 (577)
T 2ymu_A          276 TIASASDDKTVKLWNRNG-Q-------LLQTLTGHSSSVWGVAFSPDGQTIASAS  322 (577)
T ss_dssp             EEEEEETTSCEEEEETTS-C-------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEeCCCEEEEEeCCC-c-------EEEEEecCCCCeEEEEECCCCCEEEEEe
Confidence            999999999999999753 4       7788899999999999999999877654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.8e-34  Score=244.93  Aligned_cols=274  Identities=14%  Similarity=0.171  Sum_probs=189.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|+++.+||+|+.|++|++|++.....         .....+..+.+|...|++++|+|++. +|++|+.|++|++|
T Consensus        23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~---------~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~D~~v~~w   92 (319)
T 3frx_A           23 LATSAGQPNLLLSASRDKTLISWKLTGDDQ---------KFGVPVRSFKGHSHIVQDCTLTADGA-YALSASWDKTLRLW   92 (319)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEEEEEETT---------EEEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred             EEccCCCccEEEEecCCccEEEecCCCCCc---------cccccceEEeCCcccEEEEEECCCCC-EEEEEeCCCEEEEE
Confidence            468998766999999999999999864210         01234677889999999999999999 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.+++.             +           ..+.+|  ...|.+++|+|++..++    |+++++|++....+.. +.
T Consensus        93 d~~~~~~-------------~-----------~~~~~h--~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~-~~  145 (319)
T 3frx_A           93 DVATGET-------------Y-----------QRFVGH--KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-LL  145 (319)
T ss_dssp             ETTTTEE-------------E-----------EEEECC--SSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEE-EC
T ss_pred             ECCCCCe-------------e-----------EEEccC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE-Ee
Confidence            9987511             1           133445  67899999999999887    9999999987543322 12


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+..  ....+.+.|......                               ++..+.....|...+.|..    .....
T Consensus       146 ~h~~--~v~~~~~~~~~~~~~-------------------------------~~~~l~s~~~d~~i~~wd~----~~~~~  188 (319)
T 3frx_A          146 GHND--WVSQVRVVPNEKADD-------------------------------DSVTIISAGNDKMVKAWNL----NQFQI  188 (319)
T ss_dssp             CCSS--CEEEEEECCC-------------------------------------CCEEEEEETTSCEEEEET----TTTEE
T ss_pred             ccCC--cEEEEEEccCCCCCC-------------------------------CccEEEEEeCCCEEEEEEC----Ccchh
Confidence            2211  122333333221000                               0011122222333322211    12223


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ...+.+|...|++++|+|+++ +|++|+.||.|++||++        .+  +.+..+.. ...|.+++|+|++ .+|+++
T Consensus       189 ~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~--------~~--~~~~~~~~-~~~v~~~~~sp~~-~~la~~  255 (319)
T 3frx_A          189 EADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLA--------AK--KAMYTLSA-QDEVFSLAFSPNR-YWLAAA  255 (319)
T ss_dssp             EEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETT--------TT--EEEEEEEC-CSCEEEEEECSSS-SEEEEE
T ss_pred             heeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECC--------CC--cEEEEecC-CCcEEEEEEcCCC-CEEEEE
Confidence            455678999999999999995 99999999999999986        22  34455654 4679999999998 688887


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeee--------eccCCcEeEEEEecCCCccccccccc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIF--------TGHTAVVELELIERLTKKADPVCTLE  369 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~sp~~~~~~~~c~~~  369 (384)
                      +. ..+++|++....       .+..+        ..|...|.+++|+|+|+.+++.+...
T Consensus       256 ~~-~~i~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg  308 (319)
T 3frx_A          256 TA-TGIKVFSLDPQY-------LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN  308 (319)
T ss_dssp             ET-TEEEEEEETTEE-------EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred             cC-CCcEEEEeCcCe-------eeeccCccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence            75 469999998764       33333        23567899999999999988765543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.1e-34  Score=250.88  Aligned_cols=240  Identities=10%  Similarity=0.061  Sum_probs=175.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. +||+|+.|+.|+|||+.+..            ++....+.+|.+.|++++|+|+++ +|++++.|++|++|
T Consensus        17 ~~~s~~g~-~l~~~~~d~~i~iw~~~~~~------------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~v~vw   82 (377)
T 3dwl_C           17 HAFNSQRT-EFVTTTATNQVELYEQDGNG------------WKHARTFSDHDKIVTCVDWAPKSN-RIVTCSQDRNAYVY   82 (377)
T ss_dssp             CEECSSSS-EEECCCSSSCBCEEEEETTE------------EEECCCBCCCSSCEEEEEECTTTC-CEEEEETTSSEEEC
T ss_pred             EEECCCCC-EEEEecCCCEEEEEEccCCc------------eEEEEEEecCCceEEEEEEeCCCC-EEEEEeCCCeEEEE
Confidence            57999997 89999999999999998621            256667789999999999999998 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+..++..                .   .  ...+.+|  ...|.+++|+|+++.++    |+.+++|++........  
T Consensus        83 d~~~~~~~----------------~---~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--  137 (377)
T 3dwl_C           83 EKRPDGTW----------------K---Q--TLVLLRL--NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV--  137 (377)
T ss_dssp             ------CC----------------C---C--EEECCCC--SSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC--
T ss_pred             EcCCCCce----------------e---e--eeEeccc--CCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee--
Confidence            99875200                0   0  0122233  66799999999998877    88899998754321000  


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (377)
T 3dwl_C          138 --------------------------------------------------------------------------------  137 (377)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEee-cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCC----C----CCccceeeecCCCCceEEEEeCC
Q psy4577         237 IEIKIN-HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDP----N----GECHPDLRLRGHQKEGYGLSWNP  307 (384)
Q Consensus       237 ~~~~~~-~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~----~~~~~~~~~~~h~~~i~~~~~s~  307 (384)
                      ...... |...|.+++|+|++. +|++++.|+.|++||++.......+    .    .....+..+ +|...|++++|+|
T Consensus       138 ~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp  215 (377)
T 3dwl_C          138 SKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP  215 (377)
T ss_dssp             CEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT
T ss_pred             eeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC
Confidence            111123 788999999999995 9999999999999998532211000    0    012334455 8999999999999


Q ss_pred             CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         308 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       308 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      ++ .+|++++.||+|++||+++++..   ...+..+.+|...|++++|+|++..+++.
T Consensus       216 ~~-~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  269 (377)
T 3dwl_C          216 SG-NALAYAGHDSSVTIAYPSAPEQP---PRALITVKLSQLPLRSLLWANESAIVAAG  269 (377)
T ss_dssp             TS-SCEEEEETTTEEC-CEECSTTSC---EEECCCEECSSSCEEEEEEEETTEEEEEE
T ss_pred             CC-CEEEEEeCCCcEEEEECCCCCCc---ceeeEeecCCCCceEEEEEcCCCCEEEEE
Confidence            98 79999999999999999998710   00178889999999999999999876654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.5e-33  Score=233.88  Aligned_cols=238  Identities=15%  Similarity=0.177  Sum_probs=180.6

Q ss_pred             eeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeecc
Q psy4577          43 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEW  122 (384)
Q Consensus        43 ~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (384)
                      ++..++.+|.+.|++++|+|+++ +|++++.||+|++||+.+++             .++           .+.+|  ..
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~-------------~~~-----------~~~~~--~~   56 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQV-------------EVR-----------SIQVT--ET   56 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTE-------------EEE-----------EEECC--SS
T ss_pred             eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCc-------------eeE-----------Eeecc--CC
Confidence            55677899999999999999999 88899999999999997741             111           22233  56


Q ss_pred             CeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577         123 PSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH  198 (384)
Q Consensus       123 ~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (384)
                      ++.+++|+|+++.++    |+++++||..+......+..+..                                      
T Consensus        57 ~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~--------------------------------------   98 (304)
T 2ynn_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD--------------------------------------   98 (304)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS--------------------------------------
T ss_pred             cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCC--------------------------------------
Confidence            789999999999887    99999999977655433333322                                      


Q ss_pred             EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q psy4577         199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP  278 (384)
Q Consensus       199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~  278 (384)
                       .+.++.+++++..++....|...+.|...   .+......+.+|...|.+++|+|.+..+|++|+.|++|++||++.  
T Consensus        99 -~v~~~~~~~~~~~l~sgs~D~~v~lWd~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~--  172 (304)
T 2ynn_A           99 -YIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--  172 (304)
T ss_dssp             -CEEEEEECSSSSEEEEEETTSCEEEEEGG---GTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC--
T ss_pred             -cEEEEEEcCCCCEEEEECCCCeEEEEECC---CCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC--
Confidence             24445555555555555566655555321   122334556789999999999996546999999999999999862  


Q ss_pred             CCCCCCCCccceeeecCCCCceEEEEeCC--CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577         279 SKPDPNGECHPDLRLRGHQKEGYGLSWNP--SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIE  356 (384)
Q Consensus       279 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~--~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  356 (384)
                            ... ......+|...+..++|+|  ++ .+|++|+.|++|++||+++++       ++.++.+|...|++++|+
T Consensus       173 ------~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~-------~~~~~~~h~~~v~~~~~~  237 (304)
T 2ynn_A          173 ------STP-NFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKS-------CVATLEGHMSNVSFAVFH  237 (304)
T ss_dssp             ------SSC-SEEEECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEC
T ss_pred             ------CCc-cceeccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCCc-------cceeeCCCCCCEEEEEEC
Confidence                  221 2223346677899999987  55 699999999999999999988       999999999999999999


Q ss_pred             cCCCcccccc
Q psy4577         357 RLTKKADPVC  366 (384)
Q Consensus       357 p~~~~~~~~c  366 (384)
                      |+++.+++.+
T Consensus       238 p~~~~l~s~s  247 (304)
T 2ynn_A          238 PTLPIIISGS  247 (304)
T ss_dssp             SSSSEEEEEE
T ss_pred             CCCCEEEEEc
Confidence            9999777654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2e-33  Score=248.02  Aligned_cols=251  Identities=17%  Similarity=0.210  Sum_probs=178.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|++. +||+|+.|++|+|||+.+              .+.+..+.+|...|.+++|+|++. +|++|+.|++|++|
T Consensus       156 v~~~~~~~-~l~sgs~D~~i~iwd~~~--------------~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~w  219 (410)
T 1vyh_C          156 ISFDHSGK-LLASCSADMTIKLWDFQG--------------FECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMW  219 (410)
T ss_dssp             EEECTTSS-EEEEEETTSCCCEEETTS--------------SCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEE
T ss_pred             EEEcCCCC-EEEEEeCCCeEEEEeCCC--------------CceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEE
Confidence            47999997 899999999999999976              467788899999999999999999 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.++..             +           ..+.+|  ...|.++.|+|++..++    |+++++|++........+.
T Consensus       220 d~~~~~~-------------~-----------~~~~~h--~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~  273 (410)
T 1vyh_C          220 EVQTGYC-------------V-----------KTFTGH--REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR  273 (410)
T ss_dssp             ETTTCCE-------------E-----------EEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ECCCCcE-------------E-----------EEEeCC--CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec
Confidence            9987511             1           123344  56788999999999887    8999999998766554444


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+..  ++.++.|.|+.............              .   ......+..+.....|...+.|+.    .....
T Consensus       274 ~h~~--~v~~~~~~~~~~~~~~~~~~~~~--------------~---~~~~~~g~~l~sgs~D~~i~iwd~----~~~~~  330 (410)
T 1vyh_C          274 EHRH--VVECISWAPESSYSSISEATGSE--------------T---KKSGKPGPFLLSGSRDKTIKMWDV----STGMC  330 (410)
T ss_dssp             CCSS--CEEEEEECCSCGGGGGGGCCSCC------------------------CCEEEEEETTSEEEEEET----TTTEE
T ss_pred             CCCc--eEEEEEEcCcccccchhhhcccc--------------c---cccCCCCCEEEEEeCCCeEEEEEC----CCCce
Confidence            4432  24456666553211000000000              0   000001111222223333333321    12233


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ...+.+|...|++++|+|+++ +|++|+.||.|++||++        .+  ..+..+.+|...|++++|+|++ .+|+||
T Consensus       331 ~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~--------~~--~~~~~~~~h~~~v~~l~~~~~~-~~l~sg  398 (410)
T 1vyh_C          331 LMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYK--------NK--RCMKTLNAHEHFVTSLDFHKTA-PYVVTG  398 (410)
T ss_dssp             EEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCT--------TS--CCCEEEECCSSCEEEEEECSSS-SCEEEE
T ss_pred             EEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECC--------CC--ceEEEEcCCCCcEEEEEEcCCC-CEEEEE
Confidence            556678999999999999995 89999999999999985        33  3456889999999999999998 699999


Q ss_pred             eCCCcEEEEecC
Q psy4577         317 SDDHTICLWDIN  328 (384)
Q Consensus       317 s~Dg~i~iwd~~  328 (384)
                      +.||+|++|+++
T Consensus       399 s~D~~i~vW~~r  410 (410)
T 1vyh_C          399 SVDQTVKVWECR  410 (410)
T ss_dssp             ETTSEEEEEC--
T ss_pred             eCCCcEEEEeCC
Confidence            999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=249.42  Aligned_cols=274  Identities=18%  Similarity=0.235  Sum_probs=190.6

Q ss_pred             CCCCCCCCceEEEe----------eCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEE
Q psy4577           1 VQWSPHNETILASS----------GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS   70 (384)
Q Consensus         1 v~fsp~~~~~lat~----------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s   70 (384)
                      ++|+|+++.+||+|          +.|+.|+|||+.+...           .+.+.. ..|...|++++|+|++. +|++
T Consensus        18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~-----------~~~~~~-~~~~~~v~~~~~s~~~~-~l~~   84 (416)
T 2pm9_A           18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS-----------EKPIAS-LQVDSKFNDLDWSHNNK-IIAG   84 (416)
T ss_dssp             CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG-----------CSCSCC-CCCSSCEEEEEECSSSS-CEEE
T ss_pred             EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC-----------CcEEEE-EecCCceEEEEECCCCC-eEEE
Confidence            58999997789999          8999999999986321           012222 35888999999999999 7789


Q ss_pred             EecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC-ceeee----cceeeeec
Q psy4577          71 VSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD-VTRVI----NEEYKIWK  145 (384)
Q Consensus        71 ~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~----d~~v~~w~  145 (384)
                      ++.|+.|++||+.....                    .......+.+|  ...|.+++|+|+ +..++    |+.|++||
T Consensus        85 ~~~dg~v~vw~~~~~~~--------------------~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  142 (416)
T 2pm9_A           85 ALDNGSLELYSTNEANN--------------------AINSMARFSNH--SSSVKTVKFNAKQDNVLASGGNNGEIFIWD  142 (416)
T ss_dssp             EESSSCEEEECCSSTTS--------------------CCCEEEECCCS--SSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred             EccCCeEEEeecccccc--------------------cccchhhccCC--ccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence            99999999999976210                    00011233344  668999999998 66666    89999999


Q ss_pred             ccccc------cccee-ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccc
Q psy4577         146 KNTPF------LYDLV-MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNY  218 (384)
Q Consensus       146 ~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  218 (384)
                      +....      ..... .......++.++.|.++.                                    +..+.....
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------------------~~~l~~~~~  186 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL------------------------------------AHVFASAGS  186 (416)
T ss_dssp             TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC------------------------------------TTEEEEESS
T ss_pred             CCCCccccccccccccccccCCCCCeeEEEeCCCC------------------------------------CcEEEEEcC
Confidence            97654      11110 000111122333333321                                    122222223


Q ss_pred             cCcCCCCCCccCCCCceeEEEEeec------CCceEEEEEcCCCCcEEEEEeCCC---cEEEEecCCCCCCCCCCCCccc
Q psy4577         219 DTDKGDFGGFGSVSGKIEIEIKINH------EGEVNRARYMPQNPCVIATKTPSS---DVLVFDYTKHPSKPDPNGECHP  289 (384)
Q Consensus       219 d~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~v~~~p~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~  289 (384)
                      |.....|..    ...........|      ...|.+++|+|++..++++++.|+   .|++||++.        + ..+
T Consensus       187 dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~--------~-~~~  253 (416)
T 2pm9_A          187 SNFASIWDL----KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN--------A-NTP  253 (416)
T ss_dssp             SSCEEEEET----TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS--------T-TSC
T ss_pred             CCCEEEEEC----CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC--------C-CCC
Confidence            333332211    111123333333      788999999999867999999999   999999962        2 134


Q ss_pred             eeeec-CCCCceEEEEeCC-CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         290 DLRLR-GHQKEGYGLSWNP-SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       290 ~~~~~-~h~~~i~~~~~s~-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      +..+. +|...|++++|+| ++ .+|++++.||+|++||+++++       ++..+.+|...|++++|+|+++....++
T Consensus       254 ~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~~l~s~  324 (416)
T 2pm9_A          254 LQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAE-------QLSQFPARGNWCFKTKFAPEAPDLFACA  324 (416)
T ss_dssp             SBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCC-------EEEEEECSSSCCCCEEECTTCTTEEEEC
T ss_pred             cEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCc-------cceeecCCCCceEEEEECCCCCCEEEEE
Confidence            55677 8999999999999 77 799999999999999999988       9999999999999999999995433333

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.1e-34  Score=252.38  Aligned_cols=201  Identities=12%  Similarity=0.142  Sum_probs=156.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|||.++.+||+|+.||+|+|||+....            ......+.+|.+.|++|+|+|.+..+|+||+.|++|++|
T Consensus       125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~------------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKD------------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             EEECSSCTTCEEEEETTSCEEEECSSCCS------------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             EEEeCCCCCEEEEEeCCCEEEEEECCCCC------------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            57999877799999999999999997622            244556679999999999998543388999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+++.              .+..          ....+.....+.+++|+|++..++    |+.|++||+....+     
T Consensus       193 d~~~~--------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~-----  243 (435)
T 4e54_B          193 DFKGN--------------ILRV----------FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL-----  243 (435)
T ss_dssp             ETTSC--------------EEEE----------EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC-----
T ss_pred             eccCC--------------ceeE----------EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee-----
Confidence            99763              1111          111222244577899999998887    88899988643211     


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                                                                                      
T Consensus       244 --------------------------------------------------------------------------------  243 (435)
T 4e54_B          244 --------------------------------------------------------------------------------  243 (435)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                       ..+.+|...|++++|+|+++.+|++|+.|+.|+|||++...       ....+....+|..+|++++|+|+| .+|+|+
T Consensus       244 -~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~-------~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~  314 (435)
T 4e54_B          244 -WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR-------GKASFLYSLPHRHPVNAACFSPDG-ARLLTT  314 (435)
T ss_dssp             -CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC-------SSSCCSBCCBCSSCEEECCBCTTS-SEEEEE
T ss_pred             -EEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc-------ccceEEEeeeccccccceeECCCC-CeeEEE
Confidence             01125788899999999987799999999999999997321       112233456899999999999999 799999


Q ss_pred             eCCCcEEEEecCCCC
Q psy4577         317 SDDHTICLWDINATP  331 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~  331 (384)
                      +.||+|+|||++++.
T Consensus       315 ~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          315 DQKSEIRVYSASQWD  329 (435)
T ss_dssp             ESSSCEEEEESSSSS
T ss_pred             cCCCEEEEEECCCCc
Confidence            999999999999886

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-32  Score=235.81  Aligned_cols=264  Identities=18%  Similarity=0.274  Sum_probs=173.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|++. +||+|+.|++|+|||+....            .+.+..+.+|.+.|++++|+|++. +|++|+.|++|++|
T Consensus        67 ~~~sp~g~-~l~s~s~D~~v~iw~~~~~~------------~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iw  132 (345)
T 3fm0_A           67 VAWSPCGN-YLASASFDATTCIWKKNQDD------------FECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVW  132 (345)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEEECCC-------------EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred             EEECCCCC-EEEEEECCCcEEEEEccCCC------------eEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEE
Confidence            47999997 89999999999999987521            356778899999999999999999 88999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccc--ce
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLY--DL  154 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~--~~  154 (384)
                      |+...+..                     .....+.+|  ...|.+++|+|++..++    |+++++|+.......  ..
T Consensus       133 d~~~~~~~---------------------~~~~~~~~h--~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~  189 (345)
T 3fm0_A          133 EVDEEDEY---------------------ECVSVLNSH--TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT  189 (345)
T ss_dssp             EECTTSCE---------------------EEEEEECCC--CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             ECCCCCCe---------------------EEEEEecCc--CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEE
Confidence            99764110                     011123344  56789999999999887    899999998654321  12


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      +..+.  .++.++.|.|+..          .+..+.    ....+.++..........+....            .....
T Consensus       190 ~~~h~--~~v~~l~~sp~g~----------~l~s~s----~D~~v~iW~~~~~~~~~~~~~~~------------~~~~~  241 (345)
T 3fm0_A          190 LEGHE--STVWSLAFDPSGQ----------RLASCS----DDRTVRIWRQYLPGNEQGVACSG------------SDPSW  241 (345)
T ss_dssp             ECCCS--SCEEEEEECTTSS----------EEEEEE----TTSCEEEEEEECTTCTTCCCCC---------------CEE
T ss_pred             ecCCC--CceEEEEECCCCC----------EEEEEe----CCCeEEEeccccCCCCccceeec------------cCCcc
Confidence            22222  2234455555432          111111    12334444433211111000000            00001


Q ss_pred             eeEEEEe-ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577         235 IEIEIKI-NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       235 ~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l  313 (384)
                      ..+.... .|...|.+++|+|++. .|++++.|+.|++|+......... ...........+|...|++++|+|+++.+|
T Consensus       242 ~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  319 (345)
T 3fm0_A          242 KCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQ-PTFSLTAHLHQAHSQDVNCVAWNPKEPGLL  319 (345)
T ss_dssp             EEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTTSCTTS-CCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred             ceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCCCCcce-eeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence            1122222 3889999999999996 899999999999999863211100 000011123468999999999999975699


Q ss_pred             EEeeCCCcEEEEecCCCC
Q psy4577         314 LSASDDHTICLWDINATP  331 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~~~~  331 (384)
                      ||||.||+|++|++.+.+
T Consensus       320 aS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          320 ASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             EEEETTSCEEEEEECC--
T ss_pred             EEcCCCCcEEEEEecCCC
Confidence            999999999999999877

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=235.17  Aligned_cols=231  Identities=18%  Similarity=0.205  Sum_probs=175.2

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. ++|+|+.|++|+|||+.+              .+.+..+.+|...+.+++|+|+++ +|++++.|+.|++|
T Consensus        86 ~~~~~~~~-~l~s~s~D~~i~lWd~~~--------------~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~  149 (321)
T 3ow8_A           86 VDISHTLP-IAASSSLDAHIRLWDLEN--------------GKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIF  149 (321)
T ss_dssp             EEECSSSS-EEEEEETTSEEEEEETTT--------------TEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEE
T ss_pred             EEECCCCC-EEEEEeCCCcEEEEECCC--------------CCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEE
Confidence            46889987 899999999999999986              467777888999999999999999 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      ++..++.             ..           .+..|  ...+.+++|+|+++.++    |+.+++||+.+......+.
T Consensus       150 ~~~~~~~-------------~~-----------~~~~~--~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~  203 (321)
T 3ow8_A          150 GVESGKK-------------EY-----------SLDTR--GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE  203 (321)
T ss_dssp             ETTTCSE-------------EE-----------EEECS--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EcCCCce-------------eE-----------EecCC--CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence            9977511             11           11122  45688999999999888    8999999998766544443


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+..  ++.++.|.|+                                     +..+.....|...+.|..    .....
T Consensus       204 ~h~~--~v~~l~~spd-------------------------------------~~~l~s~s~dg~i~iwd~----~~~~~  240 (321)
T 3ow8_A          204 GHAM--PIRSLTFSPD-------------------------------------SQLLVTASDDGYIKIYDV----QHANL  240 (321)
T ss_dssp             CCSS--CCCEEEECTT-------------------------------------SCEEEEECTTSCEEEEET----TTCCE
T ss_pred             ccCC--ceeEEEEcCC-------------------------------------CCEEEEEcCCCeEEEEEC----CCcce
Confidence            3322  2334444443                                     333333333333333321    11222


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ...+.+|...|.+++|+|++. +|++|+.|++|++||++        .+  ..+..+.+|...|.+++|+|++ .+|+++
T Consensus       241 ~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~--------~~--~~~~~~~~h~~~v~~v~~s~~g-~~l~s~  308 (321)
T 3ow8_A          241 AGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVG--------TR--TCVHTFFDHQDQVWGVKYNGNG-SKIVSV  308 (321)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------TT--EEEEEECCCSSCEEEEEECTTS-SEEEEE
T ss_pred             eEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCC--------CC--EEEEEEcCCCCcEEEEEECCCC-CEEEEE
Confidence            455678999999999999995 99999999999999986        33  3566889999999999999998 799999


Q ss_pred             eCCCcEEEEecC
Q psy4577         317 SDDHTICLWDIN  328 (384)
Q Consensus       317 s~Dg~i~iwd~~  328 (384)
                      +.||+|++||..
T Consensus       309 ~~d~~i~vwd~p  320 (321)
T 3ow8_A          309 GDDQEIHIYDCP  320 (321)
T ss_dssp             ETTCCEEEEECC
T ss_pred             eCCCeEEEEeCC
Confidence            999999999973

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.6e-32  Score=231.87  Aligned_cols=277  Identities=14%  Similarity=0.181  Sum_probs=183.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|+++.+|||||.|++|+|||+....         .........+.+|...|.+++|+|++. +|++++.|+.|++|
T Consensus        44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~---------~~~~~~~~~l~~h~~~V~~~~~s~dg~-~l~s~~~d~~i~~~  113 (340)
T 4aow_A           44 IATTPQFPDMILSASRDKTIIMWKLTRDE---------TNYGIPQRALRGHSHFVSDVVISSDGQ-FALSGSWDGTLRLW  113 (340)
T ss_dssp             EEECTTCTTEEEEEETTSCEEEEEECCSS---------SCSEEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred             EEEeCCCCCEEEEEcCCCeEEEEECCCCC---------cccceeeEEEeCCCCCEEEEEECCCCC-EEEEEcccccceEE
Confidence            57999976699999999999999997522         111245677899999999999999999 88899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee-
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV-  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~-  155 (384)
                      +......             ...           .  ......+..+.+++++..++    |+.+++|+.......... 
T Consensus       114 ~~~~~~~-------------~~~-----------~--~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~  167 (340)
T 4aow_A          114 DLTTGTT-------------TRR-----------F--VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD  167 (340)
T ss_dssp             ETTTTEE-------------EEE-----------E--ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred             eecccce-------------eee-----------e--cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence            9876411             000           0  01134566788899988877    899999998654332211 


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      ..+..  ....+.+.++.                                   ....+.....|.....|    +.....
T Consensus       168 ~~~~~--~v~~~~~~~~~-----------------------------------~~~~~~s~~~d~~i~i~----d~~~~~  206 (340)
T 4aow_A          168 ESHSE--WVSCVRFSPNS-----------------------------------SNPIIVSCGWDKLVKVW----NLANCK  206 (340)
T ss_dssp             SSCSS--CEEEEEECSCS-----------------------------------SSCEEEEEETTSCEEEE----ETTTTE
T ss_pred             ccccC--cccceEEccCC-----------------------------------CCcEEEEEcCCCEEEEE----ECCCCc
Confidence            11111  11112221111                                   00111111222222222    111223


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      ......+|.+.|++++|+|+++ +|++|+.||.|++||++        ..  .++..+.+ ...|.+++|+|++  .+++
T Consensus       207 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~--------~~--~~~~~~~~-~~~v~~~~~~~~~--~~~~  272 (340)
T 4aow_A          207 LKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLN--------EG--KHLYTLDG-GDIINALCFSPNR--YWLC  272 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETT--------TT--EEEEEEEC-SSCEEEEEECSSS--SEEE
T ss_pred             eeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEec--------cC--ceeeeecC-CceEEeeecCCCC--ceee
Confidence            3556678999999999999995 99999999999999986        22  34445554 4579999999985  5677


Q ss_pred             eeCCCcEEEEecCCCCCCCc--cccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         316 ASDDHTICLWDINATPKENR--VIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      ++.|+.|++||+++......  .........+|...|++++|+|+++.+++.+..
T Consensus       273 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D  327 (340)
T 4aow_A          273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD  327 (340)
T ss_dssp             EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred             ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence            78899999999987651000  000122234689999999999999988776543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-31  Score=233.01  Aligned_cols=275  Identities=12%  Similarity=0.089  Sum_probs=202.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. +||+|+.||.|+|||+.+              .+.+..+.+|.+.|++++|+|+++ +|++++.|++|++|
T Consensus        38 ~~~s~~~~-~l~~~~~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           38 VKYNKEGD-LLFSCSKDSSASVWYSLN--------------GERLGTLDGHTGTIWSIDVDCFTK-YCVTGSADYSIKLW  101 (369)
T ss_dssp             EEECTTSC-EEEEEESSSCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEE
T ss_pred             EEEcCCCC-EEEEEeCCCEEEEEeCCC--------------chhhhhhhhcCCcEEEEEEcCCCC-EEEEEeCCCeEEEE
Confidence            47999997 899999999999999976              367788899999999999999999 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c-----ceeeeeccccccc
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N-----EEYKIWKKNTPFL  151 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d-----~~v~~w~~~~~~~  151 (384)
                      |+.+++.             +..+.              ....+.+++|+|++..++    +     +.+++|+......
T Consensus       102 d~~~~~~-------------~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~  154 (369)
T 3zwl_B          102 DVSNGQC-------------VATWK--------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA  154 (369)
T ss_dssp             ETTTCCE-------------EEEEE--------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred             ECCCCcE-------------EEEee--------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcc
Confidence            9987521             11111              255788999999999887    4     8999999866543


Q ss_pred             cceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC
Q psy4577         152 YDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV  231 (384)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  231 (384)
                      ...+...... +...+..                         ......+..+.+++++..+.+...|.....|..   .
T Consensus       155 ~~~~~~~~~~-~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~---~  205 (369)
T 3zwl_B          155 THELTKVSEE-PIHKIIT-------------------------HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDV---S  205 (369)
T ss_dssp             TCCEEEECSS-CSEEEEC-------------------------CTTCCCEEEEEECGGGCEEEEEETTSEEEEEET---T
T ss_pred             ceeecccccc-eeeeccC-------------------------CcCccceeEEEEcCCCCEEEEEcCCCEEEEEEC---C
Confidence            2221111100 0000000                         001113444555555555555444544444322   1


Q ss_pred             CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC
Q psy4577         232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG  311 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~  311 (384)
                      ...........|...|.+++|+|++. +|++++.||.|++||++        .+.  .+..+. +...+.+++|+|++ .
T Consensus       206 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~--------~~~--~~~~~~-~~~~~~~~~~~~~~-~  272 (369)
T 3zwl_B          206 NNYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVS--------TLQ--VLKKYE-TDCPLNTAVITPLK-E  272 (369)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT--------TCC--EEEEEE-CSSCEEEEEECSSS-S
T ss_pred             CCcEeEEEEecCCCceeEEEECCCCC-EEEEecCCceEEEEECC--------CCc--eeeeec-CCCCceeEEecCCC-c
Confidence            11334556667999999999999995 99999999999999986        333  333444 77889999999998 7


Q ss_pred             eEEEeeCCC--------------cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         312 YLLSASDDH--------------TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       312 ~l~s~s~Dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      ++++++.++              .+++||+.+++       ++..+.+|...|++++|+|+++.+++.+.
T Consensus       273 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  335 (369)
T 3zwl_B          273 FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE-------EIGRVQGHFGPLNTVAISPQGTSYASGGE  335 (369)
T ss_dssp             EEEEEECCC-------------CEEEEEETTTCC-------EEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             eEEEeecCCCceEEEEecCCCcceeEEEecCCCc-------chhheecccCcEEEEEECCCCCEEEEEcC
Confidence            999999998              89999999998       99999999999999999999998776644

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.1e-32  Score=231.52  Aligned_cols=241  Identities=15%  Similarity=0.159  Sum_probs=181.0

Q ss_pred             CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec
Q psy4577          42 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE  121 (384)
Q Consensus        42 ~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (384)
                      ..+..++.||.+.|++++|+|++..+|+||+.|++|++|++.....                   ........+.+|  .
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~-------------------~~~~~~~~~~~h--~   65 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-------------------KFGVPVRSFKGH--S   65 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT-------------------EEEEEEEEEECC--S
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc-------------------cccccceEEeCC--c
Confidence            3566788999999999999998755899999999999999865310                   000111244456  6


Q ss_pred             cCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCC
Q psy4577         122 WPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQN  197 (384)
Q Consensus       122 ~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (384)
                      ..|.+++|+|+++.++    |+++++||+.+......+..+..                                     
T Consensus        66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~-------------------------------------  108 (319)
T 3frx_A           66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-------------------------------------  108 (319)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-------------------------------------
T ss_pred             ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCC-------------------------------------
Confidence            7899999999999887    99999999987665444443322                                     


Q ss_pred             eEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCC-----cEEEEEeCCCcEEEE
Q psy4577         198 HLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNP-----CVIATKTPSSDVLVF  272 (384)
Q Consensus       198 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-----~~l~s~s~dg~i~iw  272 (384)
                        .+.++.+++++..+.....|...+.|..    .+. ......+|...|.+++|+|...     .++++++.|+.|++|
T Consensus       109 --~v~~~~~~~~~~~l~s~s~D~~i~vwd~----~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~w  181 (319)
T 3frx_A          109 --DVMSVDIDKKASMIISGSRDKTIKVWTI----KGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW  181 (319)
T ss_dssp             --CEEEEEECTTSCEEEEEETTSCEEEEET----TSC-EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEE
T ss_pred             --cEEEEEEcCCCCEEEEEeCCCeEEEEEC----CCC-eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEE
Confidence              2334444444444445555555554432    122 3556678999999999999532     389999999999999


Q ss_pred             ecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeE
Q psy4577         273 DYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEL  352 (384)
Q Consensus       273 d~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  352 (384)
                      |++        ..  .....+.+|...|.+++|+|++ .+|++|+.||+|++||+++++       ++.++..+ ..|.+
T Consensus       182 d~~--------~~--~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~-~~v~~  242 (319)
T 3frx_A          182 NLN--------QF--QIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKK-------AMYTLSAQ-DEVFS  242 (319)
T ss_dssp             ETT--------TT--EEEEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTE-------EEEEEECC-SCEEE
T ss_pred             ECC--------cc--hhheeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-------EEEEecCC-CcEEE
Confidence            986        22  3455788999999999999998 799999999999999999987       78888754 67999


Q ss_pred             EEEecCCCcccccc
Q psy4577         353 ELIERLTKKADPVC  366 (384)
Q Consensus       353 ~~~sp~~~~~~~~c  366 (384)
                      ++|+|++..+++.+
T Consensus       243 ~~~sp~~~~la~~~  256 (319)
T 3frx_A          243 LAFSPNRYWLAAAT  256 (319)
T ss_dssp             EEECSSSSEEEEEE
T ss_pred             EEEcCCCCEEEEEc
Confidence            99999998776553

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-32  Score=234.36  Aligned_cols=253  Identities=17%  Similarity=0.267  Sum_probs=158.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|++. +||+|+.|++|+|||+.....       .....+.+..+.+|.+.|++++|+|++. +|++|+.|++|++|
T Consensus        64 v~~sp~~~-~las~s~D~~v~iw~~~~~~~-------~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iw  134 (330)
T 2hes_X           64 VAWRPHTS-LLAAGSFDSTVSIWAKEESAD-------RTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIW  134 (330)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEEC--------------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEE
T ss_pred             EEECCCCC-EEEEEeCCCcEEEEEcccCcC-------ccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEE
Confidence            47999997 899999999999999864110       0012356778899999999999999999 88999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccc--cccce
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTP--FLYDL  154 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~--~~~~~  154 (384)
                      |+.....                    .......+.+|  ...|.+++|+|++..++    |+++++|+....  .....
T Consensus       135 d~~~~~~--------------------~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~  192 (330)
T 2hes_X          135 ETDESGE--------------------EYECISVLQEH--SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV  192 (330)
T ss_dssp             ECCTTCC--------------------CCEEEEEECCC--SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             eccCCCC--------------------CeEEEEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE
Confidence            9953200                    00011233445  56799999999999887    999999997653  22222


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      +..+..  ++.++.|.|+...        ..+..+.    ....+.++.+.-...                    .....
T Consensus       193 ~~~h~~--~v~~~~~~~~~~~--------~~l~s~s----~D~~v~iw~~~~~~~--------------------~~~~~  238 (330)
T 2hes_X          193 LNGHEG--TVWSSDFDKTEGV--------FRLCSGS----DDSTVRVWKYMGDDE--------------------DDQQE  238 (330)
T ss_dssp             ECCCSS--CEEEEEECCSSSS--------CEEEEEE----TTSCEEEEEEEEECT--------------------TSCEE
T ss_pred             ccCCCC--cEEEEEecCCCCe--------eEEEEEe----CCCeEEEEEecCCCc--------------------cccce
Confidence            223322  2334444443110        0111111    122233333320000                    00000


Q ss_pred             -eeEEEEe-ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcccee-eecCCCC-ceEEEEeCC--C
Q psy4577         235 -IEIEIKI-NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDL-RLRGHQK-EGYGLSWNP--S  308 (384)
Q Consensus       235 -~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~h~~-~i~~~~~s~--~  308 (384)
                       ....... .|...|.+++|++++  +|++++.||.|+|||..        .+...... .+.+|.. .|.+++|+|  +
T Consensus       239 ~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~--------~~~~~~~~~~~~~h~~~~v~~v~~~~~~~  308 (330)
T 2hes_X          239 WVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEV--------DGEWKVFAKRALCHGVYEINVVKWLELNG  308 (330)
T ss_dssp             EEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEE--------TTEEEEEEEESCTTTTSCEEEEEEC----
T ss_pred             eEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcC--------CCceEEEeccccccccceEEEEEEecCCC
Confidence             1122222 388999999999765  78999999999999985        33322222 3467887 899999999  6


Q ss_pred             CCCeEEEeeCCCcEEEEecCC
Q psy4577         309 LNGYLLSASDDHTICLWDINA  329 (384)
Q Consensus       309 ~~~~l~s~s~Dg~i~iwd~~~  329 (384)
                      + .+||||+.||+|+|||++.
T Consensus       309 ~-~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          309 K-TILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             --CCEEEEETTSEEEEEEC--
T ss_pred             c-eEEEEecCCCcEEEEEecc
Confidence            6 7999999999999999875

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.8e-32  Score=237.31  Aligned_cols=262  Identities=10%  Similarity=0.118  Sum_probs=169.3

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEec------CCeEEEEEcc
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE------DNIMQILSVV   83 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~------D~~i~vwd~~   83 (384)
                      +++.++.+.....|++...                  ...+|...|++++|+|||+ +||+||.      |++|++|+..
T Consensus        18 ~~~~~~g~~~~~~w~~p~~------------------~p~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~   78 (357)
T 4g56_B           18 LYFQSNGSSKGSAWGRPVT------------------APACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDP   78 (357)
T ss_dssp             ----------------------------------------CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSC
T ss_pred             eEEecCCCccccccCCCCC------------------CcccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECC
Confidence            3455555667788887531                  1147999999999999999 8889998      5667777665


Q ss_pred             cCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceeecccc
Q psy4577          84 CVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMTHAL  160 (384)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~~~~  160 (384)
                      .+..                   ... +.....+|  ...|.+++|+|++..++   +++|++||+.+........... 
T Consensus        79 ~~~~-------------------~~~-~~~~~~~~--~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~-  135 (357)
T 4g56_B           79 EGAP-------------------NES-LCTAGVQT--EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAK-  135 (357)
T ss_dssp             C----------------------CGG-GCSEEEEC--SSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEE-
T ss_pred             CCCc-------------------cee-EecccCCC--CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeecc-
Confidence            4311                   011 11122233  66799999999998777   9999999986653321110000 


Q ss_pred             cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEE
Q psy4577         161 EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK  240 (384)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  240 (384)
                                                        ..+...|.++.+++++..+.....|...+.|+.    ........+
T Consensus       136 ----------------------------------~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~----~~~~~~~~~  177 (357)
T 4g56_B          136 ----------------------------------YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL----SQKAVLKSY  177 (357)
T ss_dssp             ----------------------------------CCCSSCEEEEEECSSSSEEEEEETTSCEEEEET----TTTEEEEEE
T ss_pred             ----------------------------------CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC----CCCcEEEEE
Confidence                                              001113555666666666666666665555422    223345666


Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      .+|...|++++|+|++..++++++.||.|++||++        .+.......+..|...+++++|+|++..+|++|+.|+
T Consensus       178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~--------~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~  249 (357)
T 4g56_B          178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR--------KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG  249 (357)
T ss_dssp             CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT--------SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred             cCCCCCEEEEEEccCCCceeeeeccCCceEEEECC--------CCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence            78999999999999987789999999999999997        4444344455667889999999998757899999999


Q ss_pred             cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         321 TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      .|++||+++++       ++.++.+|...|++++|+|++..+.+.+
T Consensus       250 ~i~~wd~~~~~-------~~~~~~~~~~~v~~l~~sp~~~~~lasg  288 (357)
T 4g56_B          250 NVSLVNIKNPD-------SAQTSAVHSQNITGLAYSYHSSPFLASI  288 (357)
T ss_dssp             CEEEEESSCGG-------GCEEECCCSSCEEEEEECSSSSCCEEEE
T ss_pred             ceeEEECCCCc-------EeEEEeccceeEEEEEEcCCCCCEEEEE
Confidence            99999999988       8999999999999999999987544443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.4e-32  Score=235.09  Aligned_cols=270  Identities=13%  Similarity=0.220  Sum_probs=190.3

Q ss_pred             CCCCCCC--CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577           1 VQWSPHN--ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~--~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~   78 (384)
                      |+|+|++  ..+||+|+.||.|+|||+.+.+            ..+...+.+|.+.|++++|+|+++ +|++++.|++|+
T Consensus        45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~  111 (368)
T 3mmy_A           45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------------QTIPKAQQMHTGPVLDVCWSDDGS-KVFTASCDKTAK  111 (368)
T ss_dssp             EEECCTTSSSEEEEEEETTSEEEEEEECTTS------------CEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSEEE
T ss_pred             EEEcCCCCCceEEEEECCCCcEEEEEcCCCC------------ceeEEEeccccCCEEEEEECcCCC-EEEEEcCCCcEE
Confidence            4799995  3489999999999999998522            245577889999999999999999 788999999999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEE--ecCceeee----cceeeeecccccccc
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQW--LPDVTRVI----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~----d~~v~~w~~~~~~~~  152 (384)
                      +||+.+++.             .            .+.+|  ...|.+++|  +|++..++    |+.+++||+......
T Consensus       112 iwd~~~~~~-------------~------------~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  164 (368)
T 3mmy_A          112 MWDLSSNQA-------------I------------QIAQH--DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM  164 (368)
T ss_dssp             EEETTTTEE-------------E------------EEEEC--SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS
T ss_pred             EEEcCCCCc-------------e------------eeccc--cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE
Confidence            999987411             1            11223  677999999  88888776    899999999876554


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                      ..+..+.   .+.++.+...            .+..+..    .+.+.++.+.                ..         
T Consensus       165 ~~~~~~~---~~~~~~~~~~------------~~~~~~~----~~~i~~~~~~----------------~~---------  200 (368)
T 3mmy_A          165 MVLQLPE---RCYCADVIYP------------MAVVATA----ERGLIVYQLE----------------NQ---------  200 (368)
T ss_dssp             EEEECSS---CEEEEEEETT------------EEEEEEG----GGCEEEEECS----------------SS---------
T ss_pred             EEEecCC---CceEEEecCC------------eeEEEeC----CCcEEEEEec----------------cc---------
Confidence            4333221   1222222111            1111111    1112222221                00         


Q ss_pred             CceeEEEEeecCCceEEEEEcCCCC---cEEEEEeCCCcEEEEecCCCCCCCCCCCCc-cceeeecCCCC----------
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQNP---CVIATKTPSSDVLVFDYTKHPSKPDPNGEC-HPDLRLRGHQK----------  298 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~h~~----------  298 (384)
                      ..........+...+.++++.++..   ..+++++.||.|++||++.        ... .....+.+|..          
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  272 (368)
T 3mmy_A          201 PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP--------PNPAKDNFTFKCHRSNGTNTSAPQD  272 (368)
T ss_dssp             CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC--------SCHHHHSEEEECSEEC----CCCEE
T ss_pred             cchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC--------CCccccceeeeeeeccccccccccc
Confidence            0111111122345556666665442   2399999999999999973        222 45567777776          


Q ss_pred             --ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccc
Q psy4577         299 --EGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEK  370 (384)
Q Consensus       299 --~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~  370 (384)
                        +|++++|+|++ .+|++|+.||.|++||+++++       ++..+.+|..+|++++|+|+++.+++.+..++
T Consensus       273 ~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~  338 (368)
T 3mmy_A          273 IYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDART-------KLKTSEQLDQPISACCFNHNGNIFAYASSYDW  338 (368)
T ss_dssp             ECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE-------EEEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred             ccceEEEEEecCC-CEEEEEccCCeEEEEECCCCc-------EEEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence              79999999998 799999999999999999988       89999999999999999999999888765443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.4e-32  Score=240.65  Aligned_cols=295  Identities=13%  Similarity=0.029  Sum_probs=203.2

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .|+|++. +||+|+.|+.|+|||+.+              .+....+.+|.+.|++++|+|++. +|++++.|++|++||
T Consensus       104 ~~~~~~~-~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd  167 (420)
T 3vl1_A          104 TAKLQMR-RFILGTTEGDIKVLDSNF--------------NLQREIDQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWS  167 (420)
T ss_dssp             EECSSSC-EEEEEETTSCEEEECTTS--------------CEEEEETTSSSSCEEEEEECTTSS-EEEEEETTSEEEEEE
T ss_pred             EEecCCC-EEEEEECCCCEEEEeCCC--------------cceeeecccccCccEEEEECCCCC-EEEEEeCCCeEEEEe
Confidence            4788887 799999999999999986              366777789999999999999999 888999999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~  157 (384)
                      +.+++..                        ..+.+|  ...|.+++|+|+++.++    |+++++||+........+..
T Consensus       168 ~~~~~~~------------------------~~~~~h--~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  221 (420)
T 3vl1_A          168 VKDGSNP------------------------RTLIGH--RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR  221 (420)
T ss_dssp             TTTCCCC------------------------EEEECC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred             CCCCcCc------------------------eEEcCC--CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec
Confidence            9875211                        123344  67899999999998887    89999999987665444433


Q ss_pred             cc-ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         158 HA-LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       158 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      +. ...+...+.+.+......                .......+..+.+++++..+.+...|.....|+.   ..+...
T Consensus       222 ~~~~~~~v~~~~~~~~~~~~~----------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~---~~~~~~  282 (420)
T 3vl1_A          222 KENPHDGVNSIALFVGTDRQL----------------HEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV---FSKEQT  282 (420)
T ss_dssp             TTBTTCCEEEEEEEECCCSSC----------------GGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEET---TTCCEE
T ss_pred             CCCCCCCccEEEEecCCccee----------------eecccCcccceEEcCCCCEEEEEcCCCeEEEEEC---CCCcee
Confidence            21 111223333333221100                0001112333445555555555555555444422   122333


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCCCCCeEEE
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~~l~s  315 (384)
                      ......|...|.+++|+|+++.+|++|+.||.|++||++        .+. .++..+.+ |...|.++.|. ++ .+|++
T Consensus       283 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~--------~~~-~~~~~~~~~~~~~v~~~~~~-~~-~~l~s  351 (420)
T 3vl1_A          283 IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR--------SPE-CPVGEFLINEGTPINNVYFA-AG-ALFVS  351 (420)
T ss_dssp             EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT--------CTT-SCSEEEEESTTSCEEEEEEE-TT-EEEEE
T ss_pred             EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC--------CCc-CchhhhhccCCCCceEEEeC-CC-CEEEE
Confidence            333446889999999999996699999999999999996        222 24556666 66788888665 66 69999


Q ss_pred             eeCCCcEEEEecCCCCCCCcc--ccceeeeeccCCcEeEEEEecCCC---cccccccc
Q psy4577         316 ASDDHTICLWDINATPKENRV--IDAKTIFTGHTAVVELELIERLTK---KADPVCTL  368 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~---~~~~~c~~  368 (384)
                      ++.||+|++||+.........  ......+.+|...|.+++|+|+++   .+.++...
T Consensus       352 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~  409 (420)
T 3vl1_A          352 SGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN  409 (420)
T ss_dssp             ETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred             ecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCC
Confidence            999999999999875321110  113334567889999999999999   55555443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.6e-32  Score=236.64  Aligned_cols=283  Identities=10%  Similarity=0.064  Sum_probs=188.8

Q ss_pred             CCCCCCCCceEEEeeC---CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC---CCcEEEEEecC
Q psy4577           1 VQWSPHNETILASSGT---DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN---EPWVICSVSED   74 (384)
Q Consensus         1 v~fsp~~~~~lat~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~---~~~~l~s~s~D   74 (384)
                      |+|+|++..++++|+.   |+.|+|||+.+..             .......+|...|++++|+|+   +. +|++++.|
T Consensus        24 ~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~d   89 (357)
T 3i2n_A           24 CKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD-------------LKLLREIEKAKPIKCGTFGATSLQQR-YLATGDFG   89 (357)
T ss_dssp             EEECTTSSEEEEEEC--CCCEEEEEEEECSSS-------------EEEEEEEEESSCEEEEECTTCCTTTC-CEEEEETT
T ss_pred             EEEcCCCceEEEecCccCCCcEEEEEeCCCCc-------------ccceeeecccCcEEEEEEcCCCCCCc-eEEEecCC
Confidence            4799999877788877   9999999998621             222233478999999999999   46 78899999


Q ss_pred             CeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEE------ecCceeee----cceeeee
Q psy4577          75 NIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQW------LPDVTRVI----NEEYKIW  144 (384)
Q Consensus        75 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~----d~~v~~w  144 (384)
                      +.|++||+..++.                       ....+.+|  ...|.++.|      +|+++.++    |+.+++|
T Consensus        90 g~i~iwd~~~~~~-----------------------~~~~~~~~--~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vw  144 (357)
T 3i2n_A           90 GNLHIWNLEAPEM-----------------------PVYSVKGH--KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVW  144 (357)
T ss_dssp             SCEEEECTTSCSS-----------------------CSEEECCC--SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred             CeEEEEeCCCCCc-----------------------cEEEEEec--ccceEEEeeccccccCCCccEEEEEeCCCeEEEE
Confidence            9999999987520                       01122334  566788854      67888877    8999999


Q ss_pred             cccccc-ccceeecccc--cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCc
Q psy4577         145 KKNTPF-LYDLVMTHAL--EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTD  221 (384)
Q Consensus       145 ~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~  221 (384)
                      |+.... ....+..+..  ..++.++.+                                 ...+++++..+.....|..
T Consensus       145 d~~~~~~~~~~~~~~~~~~~~~v~~~~~---------------------------------~~~~~~~~~~l~~~~~d~~  191 (357)
T 3i2n_A          145 DPRQKDDPVANMEPVQGENKRDCWTVAF---------------------------------GNAYNQEERVVCAGYDNGD  191 (357)
T ss_dssp             CTTSCSSCSEEECCCTTSCCCCEEEEEE---------------------------------ECCCC-CCCEEEEEETTSE
T ss_pred             eCCCCCCcceeccccCCCCCCceEEEEE---------------------------------EeccCCCCCEEEEEccCCe
Confidence            997754 2222222111  011112221                                 1112233333333333333


Q ss_pred             CCCCCCccCCCCceeEEEEeecCCceEEEEEcC---CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccc---eeeecC
Q psy4577         222 KGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP---QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHP---DLRLRG  295 (384)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~  295 (384)
                      ...|...   .+.  ......|...|.+++|+|   ++. +|++++.||.|++||++.        +....   ...+.+
T Consensus       192 i~i~d~~---~~~--~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~--------~~~~~~~~~~~~~~  257 (357)
T 3i2n_A          192 IKLFDLR---NMA--LRWETNIKNGVCSLEFDRKDISMN-KLVATSLEGKFHVFDMRT--------QHPTKGFASVSEKA  257 (357)
T ss_dssp             EEEEETT---TTE--EEEEEECSSCEEEEEESCSSSSCC-EEEEEESTTEEEEEEEEE--------EETTTEEEEEEEEC
T ss_pred             EEEEECc---cCc--eeeecCCCCceEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcC--------CCcccceeeeccCC
Confidence            3322210   111  234467899999999999   775 899999999999999972        22211   123448


Q ss_pred             CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCC------------ccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         296 HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKEN------------RVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       296 h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~------------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                      |...|++++|+|+++.+|++|+.||.|++||++......            ....++..+.+|...|++++|+|+++.++
T Consensus       258 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  337 (357)
T 3i2n_A          258 HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC  337 (357)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred             CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence            999999999999983389999999999999998754210            01135777889999999999999999987


Q ss_pred             cccccc
Q psy4577         364 PVCTLE  369 (384)
Q Consensus       364 ~~c~~~  369 (384)
                      ..+..+
T Consensus       338 ~s~~~d  343 (357)
T 3i2n_A          338 VCSSFD  343 (357)
T ss_dssp             EEEETT
T ss_pred             EEecCC
Confidence            444333

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1e-31  Score=253.00  Aligned_cols=272  Identities=15%  Similarity=0.171  Sum_probs=189.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|++..+||||+.|++|+|||+.....         ........+.+|...|.+++|+|+++ +|+||+.|++|++|
T Consensus       388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~---------~~~~~~~~~~~h~~~v~~v~~s~~g~-~l~sgs~Dg~v~vw  457 (694)
T 3dm0_A          388 IATPIDNADIIVSASRDKSIILWKLTKDDK---------AYGVAQRRLTGHSHFVEDVVLSSDGQ-FALSGSWDGELRLW  457 (694)
T ss_dssp             EECCTTCCSEEEEEETTSEEEEEECCCSTT---------CSCEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred             EEecCCCCCEEEEEeCCCcEEEEEccCCCc---------ccccccceecCCCCcEEEEEECCCCC-EEEEEeCCCcEEEE
Confidence            468998877999999999999999975220         11244567889999999999999999 88899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.+++             ..           ..+.+|  ...|.+++|+|+++.++    |++|++||...........
T Consensus       458 d~~~~~-------------~~-----------~~~~~h--~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~  511 (694)
T 3dm0_A          458 DLAAGV-------------ST-----------RRFVGH--TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE  511 (694)
T ss_dssp             ETTTTE-------------EE-----------EEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred             ECCCCc-------------ce-----------eEEeCC--CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc
Confidence            997741             11           133445  66799999999999887    9999999975443222111


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCC--cccccccccCcCCCCCCccCCCCc
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNED--AQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      ...                                    .+...+.++.+++++  ..+.....|...+.|+.    ...
T Consensus       512 ~~~------------------------------------~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~----~~~  551 (694)
T 3dm0_A          512 GGE------------------------------------GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL----SNC  551 (694)
T ss_dssp             STT------------------------------------SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET----TTC
T ss_pred             CCC------------------------------------CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC----CCC
Confidence            100                                    000112333333322  12233334444443322    122


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                      .....+.+|.+.|++++|+|++. +|++|+.||.|++||++        .+.  .+..+. +...|.+++|+|++ .+|+
T Consensus       552 ~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~--------~~~--~~~~~~-~~~~v~~~~~sp~~-~~l~  618 (694)
T 3dm0_A          552 KLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLA--------EGK--KLYSLE-ANSVIHALCFSPNR-YWLC  618 (694)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETT--------TTE--EEECCB-CSSCEEEEEECSSS-SEEE
T ss_pred             cEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECC--------CCc--eEEEec-CCCcEEEEEEcCCC-cEEE
Confidence            23456678999999999999995 99999999999999996        332  344444 44679999999997 5666


Q ss_pred             EeeCCCcEEEEecCCCCCCCccccceeeeecc-------------------CCcEeEEEEecCCCccccccccc
Q psy4577         315 SASDDHTICLWDINATPKENRVIDAKTIFTGH-------------------TAVVELELIERLTKKADPVCTLE  369 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h-------------------~~~v~~~~~sp~~~~~~~~c~~~  369 (384)
                      ++ .|+.|+|||+++++       .+..+..+                   ...+++++|||+++.+++.+...
T Consensus       619 ~~-~~~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg  684 (694)
T 3dm0_A          619 AA-TEHGIKIWDLESKS-------IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG  684 (694)
T ss_dssp             EE-ETTEEEEEETTTTE-------EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred             EE-cCCCEEEEECCCCC-------ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence            55 56779999999886       55544322                   12478999999999988765433

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=8.5e-32  Score=231.75  Aligned_cols=232  Identities=15%  Similarity=0.168  Sum_probs=170.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. +||+|+.|+.|++||+.+..          ........+.+|.+.|.++.|++++.  +++++.|++|++|
T Consensus       103 ~~~s~~~~-~l~s~~~d~~v~iw~~~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~w  169 (340)
T 1got_B          103 CAYAPSGN-YVACGGLDNICSIYNLKTRE----------GNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALW  169 (340)
T ss_dssp             EEECTTSS-EEEEEETTCEEEEEETTTCS----------BSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEE
T ss_pred             EEECCCCC-EEEEEeCCCeEEEEECccCC----------CcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEE
Confidence            46899997 89999999999999997522          12356677889999999999999876  6799999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.+++             .+           ..+.+|  ...|.+++|+|++..++    |+++++||+........+.
T Consensus       170 d~~~~~-------------~~-----------~~~~~h--~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~  223 (340)
T 1got_B          170 DIETGQ-------------QT-----------TTFTGH--TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT  223 (340)
T ss_dssp             ETTTTE-------------EE-----------EEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             ECCCCc-------------EE-----------EEEcCC--CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Confidence            997751             11           123344  56799999999998887    9999999997765443333


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+..                                       .+..+.+++++..+.....|...+.|+..    ....
T Consensus       224 ~h~~---------------------------------------~v~~v~~~p~~~~l~s~s~d~~v~iwd~~----~~~~  260 (340)
T 1got_B          224 GHES---------------------------------------DINAICFFPNGNAFATGSDDATCRLFDLR----ADQE  260 (340)
T ss_dssp             CCSS---------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEETT----TTEE
T ss_pred             CCcC---------------------------------------CEEEEEEcCCCCEEEEEcCCCcEEEEECC----CCcE
Confidence            3221                                       23444444444444444455544444221    1111


Q ss_pred             EEEEe--ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577         237 IEIKI--NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       237 ~~~~~--~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                      .....  .+...|.+++|+|+++ +|++|+.||.|++||+.        .+  ..+..+.+|..+|.+++|+|++ .+|+
T Consensus       261 ~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~--------~~--~~~~~~~~h~~~v~~~~~s~dg-~~l~  328 (340)
T 1got_B          261 LMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDAL--------KA--DRAGVLAGHDNRVSCLGVTDDG-MAVA  328 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETT--------TC--CEEEEEECCSSCEEEEEECTTS-SCEE
T ss_pred             EEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcc--------cC--cEeeEeecCCCcEEEEEEcCCC-CEEE
Confidence            22211  2334799999999995 99999999999999985        22  3456889999999999999998 7999


Q ss_pred             EeeCCCcEEEEe
Q psy4577         315 SASDDHTICLWD  326 (384)
Q Consensus       315 s~s~Dg~i~iwd  326 (384)
                      ||+.||+|+|||
T Consensus       329 s~s~D~~i~iWd  340 (340)
T 1got_B          329 TGSWDSFLKIWN  340 (340)
T ss_dssp             EEETTSCEEEEC
T ss_pred             EEcCCccEEecC
Confidence            999999999997

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.9e-32  Score=237.40  Aligned_cols=243  Identities=19%  Similarity=0.272  Sum_probs=172.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. +||+|+.|++|+|||+.+              .+.+..+.+|...|++++|+|++. .|++++.|++|++|
T Consensus       129 v~~s~dg~-~l~s~~~d~~i~iwd~~~--------------~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iw  192 (393)
T 1erj_A          129 VCFSPDGK-FLATGAEDRLIRIWDIEN--------------RKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIW  192 (393)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred             EEECCCCC-EEEEEcCCCeEEEEECCC--------------CcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEE
Confidence            47999997 799999999999999986              467788899999999999999999 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec-Cceeee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP-DVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |+.+++.             ...+              .....+.+++|+| ++..++    |+.+++||..+......+
T Consensus       193 d~~~~~~-------------~~~~--------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~  245 (393)
T 1erj_A          193 DLRTGQC-------------SLTL--------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL  245 (393)
T ss_dssp             ETTTTEE-------------EEEE--------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ECCCCee-------------EEEE--------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee
Confidence            9977511             1110              1144688999999 777776    899999998776543322


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC----
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV----  231 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----  231 (384)
                      .......                                ..+...+.++.+++++..+.....|...+.|+.....    
T Consensus       246 ~~~~~~~--------------------------------~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~  293 (393)
T 1erj_A          246 DSENESG--------------------------------TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD  293 (393)
T ss_dssp             C--------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred             cccccCC--------------------------------CCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence            1100000                                0001123334444444444333344433333221100    


Q ss_pred             ----CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC
Q psy4577         232 ----SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP  307 (384)
Q Consensus       232 ----~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~  307 (384)
                          ..........+|...|.+++|+|++. +|++|+.|+.|++||++        .+  .++..+.+|...|.+++|++
T Consensus       294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~--------~~--~~~~~l~~h~~~v~~v~~~~  362 (393)
T 1erj_A          294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKK--------SG--NPLLMLQGHRNSVISVAVAN  362 (393)
T ss_dssp             -------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETT--------TC--CEEEEEECCSSCEEEEEECS
T ss_pred             ccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECC--------CC--eEEEEECCCCCCEEEEEecC
Confidence                01122445668999999999999995 99999999999999986        33  35668899999999999886


Q ss_pred             ------CCCCeEEEeeCCCcEEEEecCCC
Q psy4577         308 ------SLNGYLLSASDDHTICLWDINAT  330 (384)
Q Consensus       308 ------~~~~~l~s~s~Dg~i~iwd~~~~  330 (384)
                            ++ .+|+||+.||+|+||+++..
T Consensus       363 ~~~~~p~~-~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          363 GSSLGPEY-NVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             SCTTCTTC-EEEEEEETTSEEEEEEEEEC
T ss_pred             CcCcCCCC-CEEEEECCCCcEEECccccc
Confidence                  56 69999999999999998754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.8e-32  Score=237.24  Aligned_cols=273  Identities=14%  Similarity=0.120  Sum_probs=190.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC----C---CcEEEEEec
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN----E---PWVICSVSE   73 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~----~---~~~l~s~s~   73 (384)
                      |+|+|  . +||+|+.||+|+|||+.....        ..+......+.+|...|++++|+|+    +   . +|++++.
T Consensus        22 ~~~~~--~-~l~s~~~dg~i~iw~~~~~~~--------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~-~l~s~~~   89 (397)
T 1sq9_A           22 VSACN--S-FTVSCSGDGYLKVWDNKLLDN--------ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC-LVATTSF   89 (397)
T ss_dssp             EEECS--S-EEEEEETTSEEEEEESBCCTT--------CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE-EEEEEET
T ss_pred             EEecC--C-eEEEEcCCCEEEEEECCCccc--------ccCCCcceEEecCCCcEEEEEEecccccCCcccc-EEEEEcC
Confidence            46888  3 899999999999999986210        0112357777899999999999999    8   7 7889999


Q ss_pred             CCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeee---ccCeeEEEEe----cCcee-ee----ccee
Q psy4577          74 DNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHAL---EWPSLTAQWL----PDVTR-VI----NEEY  141 (384)
Q Consensus        74 D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~----~~~~~-~~----d~~v  141 (384)
                      |+.|++||+..++..                   .......+..|..   ...|.+++|+    |++.. ++    ++.+
T Consensus        90 dg~i~iw~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i  150 (397)
T 1sq9_A           90 SGDLLFYRITREDET-------------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT  150 (397)
T ss_dssp             TSCEEEEEEEECTTT-------------------CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE
T ss_pred             CCCEEEEEccCCccc-------------------ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcE
Confidence            999999999875210                   0000112222311   3678999999    99988 76    8999


Q ss_pred             eeecccc------ccccc-----eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCC
Q psy4577         142 KIWKKNT------PFLYD-----LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNED  210 (384)
Q Consensus       142 ~~w~~~~------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  210 (384)
                      ++|++..      .....     .+...                                ..........+..+.+++++
T Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~i~~~~~~~~~  198 (397)
T 1sq9_A          151 YIWKFHPFADESNSLTLNWSPTLELQGT--------------------------------VESPMTPSQFATSVDISERG  198 (397)
T ss_dssp             EEEEEESSSSHHHHTTTCCCCEEEEEEE--------------------------------ECCSSSSCCCCCEEEECTTS
T ss_pred             EEEeCCccccccccceeeccCcceeeee--------------------------------eccccCCCCCceEEEECCCc
Confidence            9999876      33322     11100                                00000011123344444444


Q ss_pred             cccccccccCcCCCCCCccCCCCceeEEEEee---c---CCceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCC
Q psy4577         211 AQFDASNYDTDKGDFGGFGSVSGKIEIEIKIN---H---EGEVNRARYMPQNPCVIATKTPS---SDVLVFDYTKHPSKP  281 (384)
Q Consensus       211 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~---~~~v~~v~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~  281 (384)
                       .+.....|.....|..    ...........   |   ...|.+++|+|++. +|++++.|   |.|++||++      
T Consensus       199 -~l~~~~~dg~i~i~d~----~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~------  266 (397)
T 1sq9_A          199 -LIATGFNNGTVQISEL----STLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETE------  266 (397)
T ss_dssp             -EEEEECTTSEEEEEET----TTTEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETT------
T ss_pred             -eEEEEeCCCcEEEEEC----CCCceeEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECC------
Confidence             3334444444433322    11223445556   8   99999999999995 99999999   999999986      


Q ss_pred             CCCCCccceeeecC-------------CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee----
Q psy4577         282 DPNGECHPDLRLRG-------------HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT----  344 (384)
Q Consensus       282 ~~~~~~~~~~~~~~-------------h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~----  344 (384)
                        .+  .++..+.+             |...|.+++|+|++ .+|++++.||.|++||+++++       ++..+.    
T Consensus       267 --~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~  334 (397)
T 1sq9_A          267 --FG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKE-------RITTLNMHCD  334 (397)
T ss_dssp             --TC--CEEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTE-------EEEEEECCGG
T ss_pred             --CC--cccceeccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCc-------eeEEEecccC
Confidence              33  34567777             99999999999998 799999999999999999987       888888    


Q ss_pred             --cc---------------CCcEeEEEEecCCC
Q psy4577         345 --GH---------------TAVVELELIERLTK  360 (384)
Q Consensus       345 --~h---------------~~~v~~~~~sp~~~  360 (384)
                        +|               ...|++++|+|++.
T Consensus       335 ~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~  367 (397)
T 1sq9_A          335 DIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW  367 (397)
T ss_dssp             GCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             cccchhhhhccccccccccCCceeEEEeccccc
Confidence              78               99999999999983

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-32  Score=242.83  Aligned_cols=292  Identities=10%  Similarity=0.069  Sum_probs=194.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. +||+|+.|+.|+|||+....          .....+..+.+|.+.|++++|+|++..+|++++.|++|++|
T Consensus        73 ~~~s~~~~-~l~~~~~dg~v~vw~~~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  141 (416)
T 2pm9_A           73 LDWSHNNK-IIAGALDNGSLELYSTNEAN----------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW  141 (416)
T ss_dssp             EEECSSSS-CEEEEESSSCEEEECCSSTT----------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred             EEECCCCC-eEEEEccCCeEEEeeccccc----------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence            47999997 79999999999999997521          11246777889999999999999943388999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC-ceeee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD-VTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |+...+.....               ..........+|  ...+.+++|+|+ +..++    ++.+++||+........+
T Consensus       142 d~~~~~~~~~~---------------~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  204 (416)
T 2pm9_A          142 DMNKCTESPSN---------------YTPLTPGQSMSS--VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHL  204 (416)
T ss_dssp             BTTTTSSCTTT---------------CCCBCCCCSCCS--SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEE
T ss_pred             ECCCCcccccc---------------ccccccccccCC--CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEE
Confidence            99875210000               000010112233  567899999999 55555    899999999775543332


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcc-cccccccC---cCCCCCCccCC
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQ-FDASNYDT---DKGDFGGFGSV  231 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~d~---~~~~~~~~~~~  231 (384)
                      ..+...                                 ......+..+.+++++.. +.....|.   ....|....  
T Consensus       205 ~~~~~~---------------------------------~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~--  249 (416)
T 2pm9_A          205 SYTSPN---------------------------------SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN--  249 (416)
T ss_dssp             CCCCCS---------------------------------SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS--
T ss_pred             eccccc---------------------------------cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC--
Confidence            221100                                 000112333444444322 22222222   333332211  


Q ss_pred             CCceeEEEEe-ecCCceEEEEEcC-CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC
Q psy4577         232 SGKIEIEIKI-NHEGEVNRARYMP-QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL  309 (384)
Q Consensus       232 ~~~~~~~~~~-~~~~~v~~v~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~  309 (384)
                       +........ +|...|.+++|+| ++ .+|++++.||.|++||++        .+  +++..+.+|...|++++|+|++
T Consensus       250 -~~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~--------~~--~~~~~~~~~~~~v~~~~~s~~~  317 (416)
T 2pm9_A          250 -ANTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPE--------SA--EQLSQFPARGNWCFKTKFAPEA  317 (416)
T ss_dssp             -TTSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSS--------SC--CEEEEEECSSSCCCCEEECTTC
T ss_pred             -CCCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCC--------CC--ccceeecCCCCceEEEEECCCC
Confidence             111223334 7899999999999 66 599999999999999986        33  3566888999999999999998


Q ss_pred             CCeEEEeeCCCcEEEEecCCCCCCCcccc----------------------------ceeeeeccCCcEeEEEEecCCCc
Q psy4577         310 NGYLLSASDDHTICLWDINATPKENRVID----------------------------AKTIFTGHTAVVELELIERLTKK  361 (384)
Q Consensus       310 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~----------------------------~~~~~~~h~~~v~~~~~sp~~~~  361 (384)
                      +.+|++++.||.|++||+.+.+.......                            .+.....|..++++++|+|+|+.
T Consensus       318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  397 (416)
T 2pm9_A          318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL  397 (416)
T ss_dssp             TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred             CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence            56999999999999999988753211000                            00111226788999999999998


Q ss_pred             cccccc
Q psy4577         362 ADPVCT  367 (384)
Q Consensus       362 ~~~~c~  367 (384)
                      +++...
T Consensus       398 la~~~~  403 (416)
T 2pm9_A          398 VQITPD  403 (416)
T ss_dssp             ECBCTT
T ss_pred             EEEeCC
Confidence            876653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=6.2e-32  Score=240.10  Aligned_cols=251  Identities=18%  Similarity=0.235  Sum_probs=183.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+++.+||+++.||.|+|||+.......    ........+..+.+|...|++|+|+|++..+|++|+.||+|++|
T Consensus       134 l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~----~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  209 (430)
T 2xyi_A          134 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKP----EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW  209 (430)
T ss_dssp             EEEETTEEEEEEEECSSSCEEEEEGGGSCSSC----CTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEE
T ss_pred             EEECCCCCcEEEEECCCCcEEEEECCCccccc----CccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEE
Confidence            46899855699999999999999997521100    00112345667789999999999999998788899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC-ceeee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD-VTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      ++..+.....         .+   .     ....+.+|  ...|.+++|+|+ +..++    ++.|++||++......  
T Consensus       210 d~~~~~~~~~---------~~---~-----~~~~~~~h--~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~--  268 (430)
T 2xyi_A          210 DINATPKEHR---------VI---D-----AKNIFTGH--TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK--  268 (430)
T ss_dssp             ETTSCCBGGG---------EE---E-----CSEEECCC--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS--
T ss_pred             eCCCCCCCCc---------ee---c-----cceeecCC--CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc--
Confidence            9976311000         00   0     01122234  667999999995 44554    8899999876432100  


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                      
T Consensus       269 --------------------------------------------------------------------------------  268 (430)
T 2xyi_A          269 --------------------------------------------------------------------------------  268 (430)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      .......|...|++++|+|+++.+|++|+.||.|++||++.         ...++..+.+|...|++++|+|+++.+|++
T Consensus       269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~---------~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s  339 (430)
T 2xyi_A          269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---------LKLKLHSFESHKDEIFQVQWSPHNETILAS  339 (430)
T ss_dssp             CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC---------TTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred             ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC---------CCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence            01122367889999999999977899999999999999962         223567888999999999999998667999


Q ss_pred             eeCCCcEEEEecCCCCCCCc-------cccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         316 ASDDHTICLWDINATPKENR-------VIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~-------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      ++.||+|+|||+........       ....+..+.+|...|++++|+|+++.+...
T Consensus       340 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s  396 (430)
T 2xyi_A          340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS  396 (430)
T ss_dssp             EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred             EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence            99999999999987321100       012677778899999999999999944333

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.5e-31  Score=226.42  Aligned_cols=267  Identities=13%  Similarity=0.121  Sum_probs=189.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+++ +|++++ |+.|++||+...+.         ..........+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus        57 ~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           57 VTISNPTR-HVYTGG-KGCVKVWDISHPGN---------KSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIW  124 (337)
T ss_dssp             EEECSSSS-EEEEEC-BSEEEEEETTSTTC---------CSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEE
T ss_pred             EEEecCCc-EEEEcC-CCeEEEEECCCCCc---------eeeeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEE
Confidence            47899997 799988 99999999976321         01112222237899999999999999 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+..++.                      .....+.+|  ...+.+++|+|+++.++    ++.+++|++.+......+.
T Consensus       125 d~~~~~~----------------------~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~  180 (337)
T 1gxr_A          125 DLAAPTP----------------------RIKAELTSS--APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ  180 (337)
T ss_dssp             ECCCC------------------------EEEEEEECS--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ECCCCCc----------------------ceeeecccC--CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee
Confidence            9977411                      000112223  56688999999998877    8999999997765443333


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+..  +...+.|.|                                     ++..+.....|.....|..    ... .
T Consensus       181 ~~~~--~i~~~~~~~-------------------------------------~~~~l~~~~~dg~i~~~d~----~~~-~  216 (337)
T 1gxr_A          181 GHTD--GASCIDISN-------------------------------------DGTKLWTGGLDNTVRSWDL----REG-R  216 (337)
T ss_dssp             CCSS--CEEEEEECT-------------------------------------TSSEEEEEETTSEEEEEET----TTT-E
T ss_pred             cccC--ceEEEEECC-------------------------------------CCCEEEEEecCCcEEEEEC----CCC-c
Confidence            2221  123333433                                     3322332223333222211    111 1


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ......+...+.+++|+|+++ ++++++.|+.|++||++        ...   ...+.+|...|.+++|+|++ .+|+++
T Consensus       217 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~--------~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~  283 (337)
T 1gxr_A          217 QLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVN--------KPD---KYQLHLHESCVLSLKFAYCG-KWFVST  283 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------SSC---EEEECCCSSCEEEEEECTTS-SEEEEE
T ss_pred             eEeeecCCCceEEEEECCCCC-EEEEEcCCCcEEEEECC--------CCC---eEEEcCCccceeEEEECCCC-CEEEEe
Confidence            223346788999999999995 89999999999999986        222   34678899999999999998 799999


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      +.||.|++||+++++       .+.. ..|...|++++|+|+++.+++.+..
T Consensus       284 ~~dg~i~~~~~~~~~-------~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d  327 (337)
T 1gxr_A          284 GKDNLLNAWRTPYGA-------SIFQ-SKESSSVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             ETTSEEEEEETTTCC-------EEEE-EECSSCEEEEEECTTSCEEEEEETT
T ss_pred             cCCCcEEEEECCCCe-------EEEE-ecCCCcEEEEEECCCCCEEEEecCC
Confidence            999999999999887       5543 4588999999999999987766543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-32  Score=239.90  Aligned_cols=314  Identities=11%  Similarity=0.112  Sum_probs=206.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeec----CCcCcccccCCCCCCCCeeEEEe----------cccccceEEEEEccCCCc
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDL----SKIGEEQSTEDAEDGPPELLFIH----------GGHTAKISDFSWNPNEPW   66 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~----~~~~~~~~~~~~~~~~~~~~~~~----------~gh~~~V~~l~~~~~~~~   66 (384)
                      ++|+|+++.+||+|+.|+.|+|||+    .+....        ........+          .+|.+.|++++|+|++. 
T Consensus        51 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-  121 (425)
T 1r5m_A           51 STWNPLDESILAYGEKNSVARLARIVETDQEGKKY--------WKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN-  121 (425)
T ss_dssp             EEECSSCTTEEEEEETBTEEEEEEEEEC------C--------EEEEEEEEEECCCCCC------CBCEEEEEECTTSS-
T ss_pred             EEECCCCCcEEEEecCCceEEEEEEecccCCcccc--------ccccccccccccccccccccCCCCceEEEEEcCCCC-
Confidence            4799999757999999999999999    542100        000012222          23788999999999999 


Q ss_pred             EEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceee
Q psy4577          67 VICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYK  142 (384)
Q Consensus        67 ~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~  142 (384)
                      +|++++.|+.|++||....              .+.           .+.+|  ...|.+++|+|+++.++    ++.++
T Consensus       122 ~l~~~~~dg~i~i~~~~~~--------------~~~-----------~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~  174 (425)
T 1r5m_A          122 SIVTGVENGELRLWNKTGA--------------LLN-----------VLNFH--RAPIVSVKWNKDGTHIISMDVENVTI  174 (425)
T ss_dssp             EEEEEETTSCEEEEETTSC--------------EEE-----------EECCC--CSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             EEEEEeCCCeEEEEeCCCC--------------eee-----------eccCC--CccEEEEEECCCCCEEEEEecCCeEE
Confidence            8889999999999994331              111           22233  56799999999998887    89999


Q ss_pred             eeccccccccceeeccccccc-------------ceeeeeccCCCCC-CCCccceeEEEEeeecc---CCCCeEEEEEee
Q psy4577         143 IWKKNTPFLYDLVMTHALEWP-------------SLTAQWLPDVTRP-EGKDYSIHRLILGTHTS---DEQNHLLIASVQ  205 (384)
Q Consensus       143 ~w~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~  205 (384)
                      +|++........+..+.....             ...+.|.++.... ...+..+..+.+.....   -......+..+.
T Consensus       175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~  254 (425)
T 1r5m_A          175 LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLE  254 (425)
T ss_dssp             EEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEE
T ss_pred             EEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEE
Confidence            999977655443332221100             2334444432200 00111111111100000   011223466777


Q ss_pred             cCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCC
Q psy4577         206 LPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNG  285 (384)
Q Consensus       206 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~  285 (384)
                      +++++..+.....|.....|..    ...........|...|.+++|+|++  ++++++.|+.|++||++        .+
T Consensus       255 ~~~~~~~l~~~~~d~~i~i~d~----~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~--------~~  320 (425)
T 1r5m_A          255 FNDTNKLLLSASDDGTLRIWHG----GNGNSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLK--------QN  320 (425)
T ss_dssp             EETTTTEEEEEETTSCEEEECS----SSBSCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETT--------TT
T ss_pred             ECCCCCEEEEEcCCCEEEEEEC----CCCccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECC--------CC
Confidence            7777777776666766665533    1222244456799999999999988  88999999999999986        33


Q ss_pred             CccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCC-------------ccccceeeeeccCC--cE
Q psy4577         286 ECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKEN-------------RVIDAKTIFTGHTA--VV  350 (384)
Q Consensus       286 ~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~h~~--~v  350 (384)
                        ..+..+..|...|.+++|+|++ .+|++++.||.|++||+++.+...             ....++..+.+|..  .|
T Consensus       321 --~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  397 (425)
T 1r5m_A          321 --TLLALSIVDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI  397 (425)
T ss_dssp             --EEEEEEECTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE
T ss_pred             --cEeEecccCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence              3556788899999999999998 799999999999999998653100             01125777888876  99


Q ss_pred             eEEEEecCCCccccccc
Q psy4577         351 ELELIERLTKKADPVCT  367 (384)
Q Consensus       351 ~~~~~sp~~~~~~~~c~  367 (384)
                      ++++|+|+++.+++.+.
T Consensus       398 ~~~~~s~~~~~l~~~~~  414 (425)
T 1r5m_A          398 FDLSWNCAGNKISVAYS  414 (425)
T ss_dssp             EEEEECTTSSEEEEEES
T ss_pred             EEEEccCCCceEEEEec
Confidence            99999999998766543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.7e-31  Score=233.92  Aligned_cols=267  Identities=12%  Similarity=0.107  Sum_probs=182.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+++.+||+|+.|+.|+|||+.+..            ........+|.+.|.+++|+|++..+|++++.|++|++|
T Consensus        79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw  146 (383)
T 3ei3_B           79 LEWHPTHPTTVAVGSKGGDIILWDYDVQN------------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR  146 (383)
T ss_dssp             EEECSSCTTEEEEEEBTSCEEEEETTSTT------------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred             EEECCCCCCEEEEEcCCCeEEEEeCCCcc------------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence            47999984589999999999999998622            233333457999999999999443388999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.+.              .+..+..          .+.....+.+++|+|++..++    |+.+++||+...... .+.
T Consensus       147 d~~~~--------------~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~  201 (383)
T 3ei3_B          147 DFSGS--------------VIQVFAK----------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIF-KEK  201 (383)
T ss_dssp             ETTSC--------------EEEEEEC----------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEE-EEE
T ss_pred             ECCCC--------------ceEEEec----------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEE-Eec
Confidence            99752              1111111          111246789999999999887    899999998543222 222


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCc-ccccccccCcCCCCCCccCCCCce
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDA-QFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      .+.  .++.++.|.|+                                     +. .+.....|.....|+.........
T Consensus       202 ~h~--~~v~~~~~~~~-------------------------------------~~~~l~s~~~d~~i~iwd~~~~~~~~~  242 (383)
T 3ei3_B          202 LHK--AKVTHAEFNPR-------------------------------------CDWLMATSSVDATVKLWDLRNIKDKNS  242 (383)
T ss_dssp             CSS--SCEEEEEECSS-------------------------------------CTTEEEEEETTSEEEEEEGGGCCSTTC
T ss_pred             cCC--CcEEEEEECCC-------------------------------------CCCEEEEEeCCCEEEEEeCCCCCcccc
Confidence            222  12333444433                                     32 222223333333332211111111


Q ss_pred             eEEEEeecCCceEEEEEcC-CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC-----------------C
Q psy4577         236 EIEIKINHEGEVNRARYMP-QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH-----------------Q  297 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-----------------~  297 (384)
                       .....+|...|.+++|+| ++. +|++++.|+.|++||++.        +..  ...+.+|                 .
T Consensus       243 -~~~~~~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~p~  310 (383)
T 3ei3_B          243 -YIAEMPHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYD--------WSK--PDQIIIHPHRQFQHLTPIKATWHPM  310 (383)
T ss_dssp             -EEEEEECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTB--------TTS--CSEEEECCBCCCTTSCCCCCEECSS
T ss_pred             -eEEEecCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCC--------Ccc--ccccccccccccccccceEEeccCC
Confidence             223337999999999999 885 999999999999999973        221  1122222                 2


Q ss_pred             CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec--cCCcEeEEEEecCCCccccc
Q psy4577         298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG--HTAVVELELIERLTKKADPV  365 (384)
Q Consensus       298 ~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~~  365 (384)
                      ..+..++|+|++ ++  +|+.||.|++||+++++       ++.++.+  |...+..++|+|+++.+++.
T Consensus       311 ~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~-------~~~~l~~~~~~~~~~~~~~s~~g~~l~s~  370 (383)
T 3ei3_B          311 YDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGG-------LVHQLRDPNAAGIISLNKFSPTGDVLASG  370 (383)
T ss_dssp             SSEEEEECBCCT-TT--CTTCCCCEEEEETTTCC-------EEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred             CCceEEEecCCc-cc--ccCCCCeEEEEecCCCc-------eeeeecCCCCCceEEEEEEecCccEEEEe
Confidence            355668888887 55  89999999999999998       8888887  56788888999999987666

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.4e-34  Score=246.25  Aligned_cols=283  Identities=9%  Similarity=0.053  Sum_probs=183.3

Q ss_pred             CCCCCCCCceEEEeeCC-------CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEE--
Q psy4577           1 VQWSPHNETILASSGTD-------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV--   71 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~--   71 (384)
                      |+|+|+++ +||+|+.|       +.|+||++.........    .........+.+|.+.|.+++|+++   .++++  
T Consensus        20 v~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~----~~~~~~~~~l~~~~~~v~s~~~~~~---~~~~g~~   91 (365)
T 4h5i_A           20 AKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE----QFHILSEFALEDNDDSPTAIDASKG---IILVGCN   91 (365)
T ss_dssp             EEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHH----HEEEEEEEECCTTSCCCCEEEEETT---EEEEECC
T ss_pred             EEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceee----eeeeeeEEEccCCCCceEEEEeCCC---EEEEEEC
Confidence            57999997 89998754       35999998753211000    0001122456789999999887643   44444  


Q ss_pred             ---------ecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----
Q psy4577          72 ---------SEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----  137 (384)
Q Consensus        72 ---------s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----  137 (384)
                               +.|+++|+|++.....            .+..+...     +....+..+..+.+++|+|||+.++     
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~------------~~~~~~~~-----~~~~~~~~~~~~~~v~fSpDg~~la~as~~  154 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVND------------QLEFLTSV-----DFDASTNADDYTKLVYISREGTVAAIASSK  154 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTT------------EEEEEEEE-----CSSCCCCTTCCEEEEEECTTSSCEEEEESC
T ss_pred             CCccEEEEecCCCcEEEEEecCCCc------------eEEEeeee-----ceeecCCcccCEEEEEEcCCCCEEEEEECC
Confidence                     4577888888765311            01111100     0111222245678999999999875     


Q ss_pred             -cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccc
Q psy4577         138 -NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDAS  216 (384)
Q Consensus       138 -d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  216 (384)
                       |++|++||..+......+. +  ..++.++.|.|++.                                     .+...
T Consensus       155 ~d~~i~iwd~~~~~~~~~~~-~--~~~V~~v~fspdg~-------------------------------------~l~s~  194 (365)
T 4h5i_A          155 VPAIMRIIDPSDLTEKFEIE-T--RGEVKDLHFSTDGK-------------------------------------VVAYI  194 (365)
T ss_dssp             SSCEEEEEETTTTEEEEEEE-C--SSCCCEEEECTTSS-------------------------------------EEEEE
T ss_pred             CCCEEEEeECCCCcEEEEeC-C--CCceEEEEEccCCc-------------------------------------eEEec
Confidence             7899999998765433322 1  12244555555432                                     22211


Q ss_pred             cccCcCCCCCCccCCCCce-eEEEEeecCCceEEEEEcCCCCcEEEEEeCCC----cEEEEecCCCCCCCCCCCCcccee
Q psy4577         217 NYDTDKGDFGGFGSVSGKI-EIEIKINHEGEVNRARYMPQNPCVIATKTPSS----DVLVFDYTKHPSKPDPNGECHPDL  291 (384)
Q Consensus       217 ~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~  291 (384)
                      . +.....|   +...+.. .......|...|.+++|+|+++ ++++++.|+    .+++|++...      ........
T Consensus       195 s-~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~------~~~~~~~~  263 (365)
T 4h5i_A          195 T-GSSLEVI---STVTGSCIARKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSG------NTSVLRSK  263 (365)
T ss_dssp             C-SSCEEEE---ETTTCCEEEEECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETT------EEEEEEEE
T ss_pred             c-ceeEEEE---EeccCcceeeeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccc------eecceeee
Confidence            1 1111111   1111222 1223456888999999999995 888888777    6888988521      01122345


Q ss_pred             eecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeee-eccCCcEeEEEEecCCCccccccc
Q psy4577         292 RLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF-TGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       292 ~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      .+.+|..+|++++|+|+| ++||+|+.|++|+|||+++++       ++.++ .+|..+|++|+||||++.+++...
T Consensus       264 ~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~-------~~~~~~~gH~~~V~~v~fSpdg~~laS~S~  332 (365)
T 4h5i_A          264 QVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLS-------MSKIFKQAHSFAITEVTISPDSTYVASVSA  332 (365)
T ss_dssp             EEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE-------EEEEETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred             eecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCc-------EEEEecCcccCCEEEEEECCCCCEEEEEeC
Confidence            678899999999999999 799999999999999999988       88774 789999999999999998877643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-31  Score=233.62  Aligned_cols=236  Identities=16%  Similarity=0.168  Sum_probs=179.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC--CCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~--~~~~l~s~s~D~~i~   78 (384)
                      ++|+|++. +||+|+.||.|+|||+....            ......+.+|.+.|++++|+|+  +. +|++++.|++|+
T Consensus        17 ~~~s~~~~-~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~v~   82 (379)
T 3jrp_A           17 AVLDYYGK-RLATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVL   82 (379)
T ss_dssp             EEECSSSS-EEEEEETTSCEEEEEEETTE------------EEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSCEE
T ss_pred             EEEcCCCC-EEEEEECCCcEEEEecCCCc------------ceeeeEecCCCCcEEEEEeCCCCCCC-EEEEeccCCEEE
Confidence            47999997 89999999999999997411            4667788999999999999977  77 889999999999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC--ceeee----cceeeeecccccccc
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD--VTRVI----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~----d~~v~~w~~~~~~~~  152 (384)
                      +||+..++.           ..+           ..+.+|  ...+.+++|+|+  +..++    |+.+++|++......
T Consensus        83 iwd~~~~~~-----------~~~-----------~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  138 (379)
T 3jrp_A           83 IWKEENGRW-----------SQI-----------AVHAVH--SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT  138 (379)
T ss_dssp             EEEEETTEE-----------EEE-----------EEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred             EEEcCCCce-----------eEe-----------eeecCC--CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce
Confidence            999987410           000           122223  567999999999  77766    889999887542110


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (379)
T 3jrp_A          139 --------------------------------------------------------------------------------  138 (379)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeEEEEeecCCceEEEEEcC-------------CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCc
Q psy4577         233 GKIEIEIKINHEGEVNRARYMP-------------QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE  299 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p-------------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  299 (384)
                         .......|...|.+++|+|             ++ .+|++++.||.|++||++..      .........+.+|...
T Consensus       139 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~h~~~  208 (379)
T 3jrp_A          139 ---SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSD------AQTYVLESTLEGHSDW  208 (379)
T ss_dssp             ---CEEEEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETT------TTEEEEEEEECCCSSC
T ss_pred             ---eeEEecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCC------CcceeeEEEEecccCc
Confidence               0122346778899999999             56 49999999999999999731      1112345678899999


Q ss_pred             eEEEEeCCC---CCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         300 GYGLSWNPS---LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       300 i~~~~~s~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      |.+++|+|+   + .+|++++.||.|++||++++...  ....+.....|...|++++|+|+++.+++.+.
T Consensus       209 v~~~~~sp~~~~~-~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  276 (379)
T 3jrp_A          209 VRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQGP--WKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  276 (379)
T ss_dssp             EEEEEECCCCSSS-EEEEEEETTSCEEEEEESSTTSC--CEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred             EeEEEECCCCCCC-CeEEEEeCCCEEEEEeCCCCCcc--ceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence            999999999   7 79999999999999999986411  01122333458899999999999998876654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.7e-32  Score=273.06  Aligned_cols=340  Identities=13%  Similarity=0.150  Sum_probs=223.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. +||+|+.||+|+|||+.+              .+.+..+.+|.+.|++++|+|+++ +|++++.|++|++|
T Consensus       621 ~~~s~~~~-~l~s~~~d~~i~vw~~~~--------------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vw  684 (1249)
T 3sfz_A          621 ACFSQDGQ-RIASCGADKTLQVFKAET--------------GEKLLDIKAHEDEVLCCAFSSDDS-YIATCSADKKVKIW  684 (1249)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred             EEECCCCC-EEEEEeCCCeEEEEECCC--------------CCEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCeEEEE
Confidence            47999997 899999999999999986              466778899999999999999999 88899999999999


Q ss_pred             EcccCCCccch--------------------hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---
Q psy4577          81 SVVCVEPFDDA--------------------VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---  137 (384)
Q Consensus        81 d~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---  137 (384)
                      |+.+++.....                    ......++.+++|+.........+.+|  ...|.+++|+|++..++   
T Consensus       685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h--~~~v~~~~~sp~~~~l~s~s  762 (1249)
T 3sfz_A          685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH--TNSVNHCRFSPDDELLASCS  762 (1249)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC--SSCEEEEEECSSTTEEEEEE
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC--CCCEEEEEEecCCCEEEEEE
Confidence            99876422110                    011224567899998777665566666  67899999999998887   


Q ss_pred             -cceeeeeccccccccceeeccc-----------ccccceeeeeccCCCCCC-----------------------CCccc
Q psy4577         138 -NEEYKIWKKNTPFLYDLVMTHA-----------LEWPSLTAQWLPDVTRPE-----------------------GKDYS  182 (384)
Q Consensus       138 -d~~v~~w~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-----------------------~~~~~  182 (384)
                       |+++++||+........+....           ......++.|.+++....                       .....
T Consensus       763 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  842 (1249)
T 3sfz_A          763 ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST  842 (1249)
T ss_dssp             SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSC
T ss_pred             CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCc
Confidence             8999999987653322211100           000111122222211000                       00000


Q ss_pred             ee---------EEEEeeecc---------------CCCCeEEEEEeecCCCCcccccccccCcCCCCCC-----------
Q psy4577         183 IH---------RLILGTHTS---------------DEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGG-----------  227 (384)
Q Consensus       183 ~~---------~~~~~~~~~---------------~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~-----------  227 (384)
                      +.         .+..+....               -..+...+..+.+++++..+.....|.....|..           
T Consensus       843 v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~  922 (1249)
T 3sfz_A          843 IQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVL  922 (1249)
T ss_dssp             CCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSE
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecc
Confidence            00         000000000               0011112444445554444444433333322210           


Q ss_pred             ----------------------------------------------------------------ccCCCCceeEEEEeec
Q psy4577         228 ----------------------------------------------------------------FGSVSGKIEIEIKINH  243 (384)
Q Consensus       228 ----------------------------------------------------------------~~~~~~~~~~~~~~~~  243 (384)
                                                                                      .+............+|
T Consensus       923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h 1002 (1249)
T 3sfz_A          923 KQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH 1002 (1249)
T ss_dssp             EEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCC
T ss_pred             cceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccC
Confidence                                                                            0001111123344579


Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC-------------CC-----------------CCCccceeee
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP-------------DP-----------------NGECHPDLRL  293 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~-------------~~-----------------~~~~~~~~~~  293 (384)
                      ...|.+++|+|+++ +|++++.||.|++||+.......             .+                 .........+
T Consensus      1003 ~~~v~~l~~s~dg~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 1081 (1249)
T 3sfz_A         1003 KKAVRHIQFTADGK-TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF 1081 (1249)
T ss_dssp             SSCCCCEEECSSSS-CEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEE
T ss_pred             CCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEE
Confidence            99999999999995 89999999999999986421100             00                 0012234567


Q ss_pred             cCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         294 RGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       294 ~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      .+|...|++++|+|++ .+|++++.||+|++||+.+++       ++..+.+|...|++++|+|+++.+++.+.
T Consensus      1082 ~~~~~~v~~~~~s~d~-~~l~s~s~d~~v~iwd~~~~~-------~~~~l~~h~~~v~~~~~s~dg~~lat~~~ 1147 (1249)
T 3sfz_A         1082 TCHQGTVLSCAISSDA-TKFSSTSADKTAKIWSFDLLS-------PLHELKGHNGCVRCSAFSLDGILLATGDD 1147 (1249)
T ss_dssp             ECCSSCCCCEEECSSS-SSCEEECCSSCCCEECSSSSS-------CSBCCCCCSSCEEEEEECSSSSEEEEEET
T ss_pred             cccCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCcc-------eeeeeccCCCcEEEEEECCCCCEEEEEeC
Confidence            7899999999999998 799999999999999999988       88899999999999999999998776643

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.4e-31  Score=232.03  Aligned_cols=255  Identities=11%  Similarity=0.137  Sum_probs=174.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. +||+|+.|+.|+|||+.+..            .+.+..+.+|...|++++|+|++. +|++++.|+.|++|
T Consensus        14 ~~~s~~~~-~l~~~~~d~~v~i~~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~vw   79 (372)
T 1k8k_C           14 HAWNKDRT-QIAICPNNHEVHIYEKSGNK------------WVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNAYVW   79 (372)
T ss_dssp             EEECTTSS-EEEEECSSSEEEEEEEETTE------------EEEEEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEE
T ss_pred             EEECCCCC-EEEEEeCCCEEEEEeCCCCc------------EEeeeeecCCCCcccEEEEeCCCC-EEEEEcCCCeEEEE
Confidence            47999997 89999999999999998611            127788889999999999999999 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+..++.             ....         .+..|  ...+.+++|+|+++.++    ++.+++|++..........
T Consensus        80 d~~~~~~-------------~~~~---------~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~  135 (372)
T 1k8k_C           80 TLKGRTW-------------KPTL---------VILRI--NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK  135 (372)
T ss_dssp             EEETTEE-------------EEEE---------ECCCC--SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred             ECCCCee-------------eeeE---------EeecC--CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee
Confidence            9976410             0000         11122  56789999999998887    8999999997655321111


Q ss_pred             c--ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         157 T--HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       157 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      .  .....+..++.|.|+..          .+..+.    ....+.++.+.............+...         ....
T Consensus       136 ~~~~~~~~~i~~~~~~~~~~----------~l~~~~----~dg~i~~~d~~~~~~~~~~~~~~~~~~---------~~~~  192 (372)
T 1k8k_C          136 HIKKPIRSTVLSLDWHPNSV----------LLAAGS----CDFKCRIFSAYIKEVEERPAPTPWGSK---------MPFG  192 (372)
T ss_dssp             EECTTCCSCEEEEEECTTSS----------EEEEEE----TTSCEEEEECCCTTTSCCCCCBTTBSC---------CCTT
T ss_pred             eeecccCCCeeEEEEcCCCC----------EEEEEc----CCCCEEEEEcccccccccccccccccc---------cchh
Confidence            1  11122344555555431          122221    123344444331110000000000000         0112


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                      ........|...|.+++|+|++. +|++++.||.|++||++        .+  .++..+.+|..+|.+++|+|++ .+|+
T Consensus       193 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~--------~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~  260 (372)
T 1k8k_C          193 ELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADAD--------KK--MAVATLASETLPLLAVTFITES-SLVA  260 (372)
T ss_dssp             CEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGG--------GT--TEEEEEECSSCCEEEEEEEETT-EEEE
T ss_pred             hheEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEECC--------CC--ceeEEEccCCCCeEEEEEecCC-CEEE
Confidence            23445558999999999999995 99999999999999996        33  3566888999999999999998 6777


Q ss_pred             EeeCCCcEEEEecCC
Q psy4577         315 SASDDHTICLWDINA  329 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~  329 (384)
                      +| .|+.|++||++.
T Consensus       261 ~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          261 AG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EE-TTSSCEEEEEET
T ss_pred             EE-eCCeEEEEEccC
Confidence            77 999999999987

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6.6e-31  Score=232.90  Aligned_cols=264  Identities=16%  Similarity=0.236  Sum_probs=179.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+||+++  +||+|. |++|+|||+.+..            ...+..+.+|.+.|++|+|+|+|. +||+|+.|++|++|
T Consensus       111 l~wS~~n--~lAvgl-d~tV~lWd~~tg~------------~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iW  174 (420)
T 4gga_A          111 VDWSSGN--VLAVAL-DNSVYLWSASSGD------------ILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLW  174 (420)
T ss_dssp             EEECTTS--EEEEEE-TTEEEEEETTTCC------------EEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred             EEECCCC--EEEEEe-CCEEEEEECCCCC------------EEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEE
Confidence            4688653  788875 9999999998721            223344567888999999999999 88899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccc-cee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLY-DLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~-~~~  155 (384)
                      |+.+++             .+.           .+.+|  ...+.+++++  +..++    ++.+++|+....... ..+
T Consensus       175 d~~~~~-------------~~~-----------~~~~h--~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~  226 (420)
T 4gga_A          175 DVQQQK-------------RLR-----------NMTSH--SARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATL  226 (420)
T ss_dssp             ETTTTE-------------EEE-----------EECCC--SSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             EcCCCc-------------EEE-----------EEeCC--CCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEe
Confidence            998751             111           22334  4556666665  44554    899999987654322 111


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      ..+...  .....+.+                                     .+..+.....|.....|..........
T Consensus       227 ~~h~~~--~~~~~~~~-------------------------------------~g~~l~s~~~D~~v~i~~~~~~~~~~~  267 (420)
T 4gga_A          227 SGHSQE--VCGLRWAP-------------------------------------DGRHLASGGNDNLVNVWPSAPGEGGWV  267 (420)
T ss_dssp             ECCSSC--EEEEEECT-------------------------------------TSSEEEEEETTSCEEEEESSCCSSCSC
T ss_pred             cccccc--eeeeeecC-------------------------------------CCCeeeeeeccccceEEeeccccccce
Confidence            222111  12222322                                     222222222232222222111111222


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEE--eCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATK--TPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l  313 (384)
                      .......|.+.|.+++|+|.+.++++++  +.|++|++||++        ++.  ....+..| ..+.++.|+|++ ..|
T Consensus       268 ~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~--------t~~--~~~~~~~~-~~v~~~~~~~~~-~~l  335 (420)
T 4gga_A          268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC--------SGA--CLSAVDAH-SQVCSILWSPHY-KEL  335 (420)
T ss_dssp             CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT--------TTE--EEEEEECS-SCEEEEEEETTT-TEE
T ss_pred             eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC--------ccc--cceeeccc-cceeeeeecCCC-CeE
Confidence            3455667999999999999887788764  579999999986        343  34455544 568999999998 677


Q ss_pred             EEee--CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         314 LSAS--DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       314 ~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      ++++  .|++|+|||+.+++       ++.++.+|.+.|++++|+|+|..+++.+
T Consensus       336 v~~sg~~d~~I~iwd~~~~~-------~v~~l~gH~~~V~~l~~spdg~~l~S~s  383 (420)
T 4gga_A          336 ISGHGFAQNQLVIWKYPTMA-------KVAELKGHTSRVLSLTMSPDGATVASAA  383 (420)
T ss_dssp             EEEECTTTCCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred             EEEEecCCCEEEEEECCCCc-------EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            7654  79999999999998       9999999999999999999999887654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6e-32  Score=241.76  Aligned_cols=308  Identities=12%  Similarity=0.144  Sum_probs=187.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccc------------cceEEEEEccCC--Cc
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT------------AKISDFSWNPNE--PW   66 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~------------~~V~~l~~~~~~--~~   66 (384)
                      |+|+|++. +||+|+.||.|+|||+.+....   .........+...+.+|.            +.|++++|+|++  . 
T Consensus        34 v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~---~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~-  108 (447)
T 3dw8_B           34 VEFNHSGE-LLATGDKGGRVVIFQQEQENKI---QSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA-  108 (447)
T ss_dssp             EEECSSSS-EEEEEETTSEEEEEEECC--------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS-
T ss_pred             EEECCCCC-EEEEEcCCCeEEEEEecCCCCC---CcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc-
Confidence            57999997 8999999999999999863210   001112234677888998            889999999998  5 


Q ss_pred             EEEEEecCCeEEEEEcccCCCccchhheeeeee-----------eEEE-----eccCCcccccceeeeeeccCeeEEEEe
Q psy4577          67 VICSVSEDNIMQILSVVCVEPFDDAVEERVINE-----------EYKI-----WKKNTPFLYDLVMTHALEWPSLTAQWL  130 (384)
Q Consensus        67 ~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~-----------~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~  130 (384)
                      +|++++.|++|++||+..++............+           .+..     |............+|  ...|.+++|+
T Consensus       109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~  186 (447)
T 3dw8_B          109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH--TYHINSISIN  186 (447)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC--SSCCCEEEEC
T ss_pred             eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC--CcceEEEEEc
Confidence            788999999999999976421100000000000           0000     000000000012334  6789999999


Q ss_pred             cCceeee---cceeeeecccc-ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeec
Q psy4577         131 PDVTRVI---NEEYKIWKKNT-PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQL  206 (384)
Q Consensus       131 ~~~~~~~---d~~v~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  206 (384)
                      |+++.++   |+.+++||+.. ......+.......                                ......+..+.+
T Consensus       187 ~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~v~~~~~  234 (447)
T 3dw8_B          187 SDYETYLSADDLRINLWHLEITDRSFNIVDIKPANM--------------------------------EELTEVITAAEF  234 (447)
T ss_dssp             TTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSG--------------------------------GGCCCCEEEEEE
T ss_pred             CCCCEEEEeCCCeEEEEECCCCCceeeeeecccccc--------------------------------cccCcceEEEEE
Confidence            9998887   99999999973 22222110000000                                000112334444


Q ss_pred             CCCC-cccccccccCcCCCCCCccCCCCceeEEEEeecC------------CceEEEEEcCCCCcEEEEEeCCCcEEEEe
Q psy4577         207 PNED-AQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHE------------GEVNRARYMPQNPCVIATKTPSSDVLVFD  273 (384)
Q Consensus       207 ~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~v~~~p~~~~~l~s~s~dg~i~iwd  273 (384)
                      ++++ ..+.....|.....|+.............+..|.            ..|.+++|+|+++ +|++++. +.|++||
T Consensus       235 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd  312 (447)
T 3dw8_B          235 HPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWD  312 (447)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEE
T ss_pred             CCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEe
Confidence            4443 3333333444333332211110000123333444            4899999999995 8999998 9999999


Q ss_pred             cCCCCCCCCCCCCccceeeecCCCCc---------------eEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCcccc
Q psy4577         274 YTKHPSKPDPNGECHPDLRLRGHQKE---------------GYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVID  338 (384)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~h~~~---------------i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  338 (384)
                      ++.         ...++..+.+|...               +..++|+|++ .+|++|+.||.|++||+.+++       
T Consensus       313 ~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~-------  375 (447)
T 3dw8_B          313 LNM---------ENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKR-------  375 (447)
T ss_dssp             TTC---------CSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCC-------
T ss_pred             CCC---------CccccceeeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCc-------
Confidence            962         12345567777542               3349999998 799999999999999999875       


Q ss_pred             ceeeee---------------------------------ccCCcEeEEEEecCCCccccccc
Q psy4577         339 AKTIFT---------------------------------GHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       339 ~~~~~~---------------------------------~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      .+ .+.                                 .+...|.+++|||+++.++..+.
T Consensus       376 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~  436 (447)
T 3dw8_B          376 DI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATT  436 (447)
T ss_dssp             EE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS
T ss_pred             ce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEec
Confidence            22 111                                 24567999999999998776543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-30  Score=250.63  Aligned_cols=330  Identities=10%  Similarity=0.042  Sum_probs=205.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+| ++ +||+++.|++|+|||+.+              .+++..+. |.+.|++++|+|++. +|++|+.||+|++|
T Consensus        64 l~fsp-g~-~L~S~s~D~~v~lWd~~~--------------~~~~~~~~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lw  125 (902)
T 2oaj_A           64 MRFVK-GI-YLVVINAKDTVYVLSLYS--------------QKVLTTVF-VPGKITSIDTDASLD-WMLIGLQNGSMIVY  125 (902)
T ss_dssp             EEEET-TT-EEEEEETTCEEEEEETTT--------------CSEEEEEE-CSSCEEEEECCTTCS-EEEEEETTSCEEEE
T ss_pred             EEEcC-CC-EEEEEECcCeEEEEECCC--------------CcEEEEEc-CCCCEEEEEECCCCC-EEEEEcCCCcEEEE
Confidence            47899 76 899999999999999986              24555554 667999999999999 78899999999999


Q ss_pred             EcccCCCcc-------------c-----------------hhheeeeeeeEEEeccCCcccccceeee------------
Q psy4577          81 SVVCVEPFD-------------D-----------------AVEERVINEEYKIWKKNTPFLYDLVMTH------------  118 (384)
Q Consensus        81 d~~~~~~~~-------------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  118 (384)
                      |+.+++...             .                 .......++.+ +|+.........+.+|            
T Consensus       126 d~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~  204 (902)
T 2oaj_A          126 DIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSE  204 (902)
T ss_dssp             ETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCC
T ss_pred             ECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccc
Confidence            997654210             0                 00011235677 8987765444444443            


Q ss_pred             ----eeccCeeEEEEecCceeee----cceeeeeccccccccce--e---eccc-----------ccccceeeeeccCCC
Q psy4577         119 ----ALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDL--V---MTHA-----------LEWPSLTAQWLPDVT  174 (384)
Q Consensus       119 ----~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~--~---~~~~-----------~~~~~~~~~~~~~~~  174 (384)
                          .+...|.+++|+|+|..++    |++|++||..+......  +   ..+.           ...++.++.|.+...
T Consensus       205 ~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~  284 (902)
T 2oaj_A          205 KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENN  284 (902)
T ss_dssp             CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSS
T ss_pred             ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCC
Confidence                1135799999999999888    99999999976543221  1   0010           011234455532110


Q ss_pred             -------C---CCC--CccceeEEEEeee----------------------------c-----------------c----
Q psy4577         175 -------R---PEG--KDYSIHRLILGTH----------------------------T-----------------S----  193 (384)
Q Consensus       175 -------~---~~~--~~~~~~~~~~~~~----------------------------~-----------------~----  193 (384)
                             .   ...  ....+..+.++..                            .                 .    
T Consensus       285 pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~  364 (902)
T 2oaj_A          285 PEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNP  364 (902)
T ss_dssp             TTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSC
T ss_pred             CCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCc
Confidence                   0   000  0001111111000                            0                 0    


Q ss_pred             ------CCCCeEEEEEe------------------------------------------------------------ecC
Q psy4577         194 ------DEQNHLLIASV------------------------------------------------------------QLP  207 (384)
Q Consensus       194 ------~~~~~~~i~~~------------------------------------------------------------~~~  207 (384)
                            .....+.++.+                                                            .++
T Consensus       365 ~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s  444 (902)
T 2oaj_A          365 GLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPA  444 (902)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC
T ss_pred             eeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccc
Confidence                  00011222211                                                            112


Q ss_pred             CCCcccccccccCcCCCCCCccCCCCceeEEE--E-----eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q psy4577         208 NEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI--K-----INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK  280 (384)
Q Consensus       208 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~  280 (384)
                      +++..++....|...+.|+.............  .     .+|...|.+|+|+|+++ +||+|+.||+|+|||+......
T Consensus       445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs~DgtV~lwd~~~~~~~  523 (902)
T 2oaj_A          445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSIETGDVVLFKYEVNQFY  523 (902)
T ss_dssp             SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEETTSCEEEEEEEECCC-
T ss_pred             ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEecCcEEEEEEecCcccc
Confidence            33333444445555555543222111000111  1     16889999999999996 9999999999999999643100


Q ss_pred             C--------C-------------C--------------CCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         281 P--------D-------------P--------------NGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       281 ~--------~-------------~--------------~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      .        +             +              ....+++..+.+|.++|++|+|||||  +||+|+.|++|+||
T Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG--~lAsgs~D~tv~lw  601 (902)
T 2oaj_A          524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG--FVGIAYAAGSLMLI  601 (902)
T ss_dssp             --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS--EEEEEETTSEEEEE
T ss_pred             CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc--EEEEEeCCCcEEEE
Confidence            0        0             0              00013466888999999999999997  99999999999999


Q ss_pred             ecCCCCCCCccccce-----eeee-ccCCcEeEEEEe-----cCC
Q psy4577         326 DINATPKENRVIDAK-----TIFT-GHTAVVELELIE-----RLT  359 (384)
Q Consensus       326 d~~~~~~~~~~~~~~-----~~~~-~h~~~v~~~~~s-----p~~  359 (384)
                      |+++..       .+     ..+. +|.+.|++|+|+     |||
T Consensus       602 d~~~~~-------~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg  639 (902)
T 2oaj_A          602 DRRGPA-------IIYMENIREISGAQSACVTCIEFVIMEYGDDG  639 (902)
T ss_dssp             ETTTTE-------EEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS
T ss_pred             ECCCCe-------EEEEeehhHhccccccceEEEEEEEEecCCCC
Confidence            997764       33     2454 899999999999     987

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=241.51  Aligned_cols=230  Identities=9%  Similarity=0.038  Sum_probs=163.6

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC------CCcEEEEEecCCeEEEEEcc
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN------EPWVICSVSEDNIMQILSVV   83 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~------~~~~l~s~s~D~~i~vwd~~   83 (384)
                      +||+++.|++|+|||+....          .......++.+|.+.|.+++|+|+      +. +||+++.||+|++||+.
T Consensus       175 ~laS~s~D~tI~iWd~~~~~----------~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~  243 (524)
T 2j04_B          175 MFDKEKHSSCIQIFKMNTST----------LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEII  243 (524)
T ss_dssp             -------CEEEEEEEEETTT----------CCEEEEEEEEECCCSEEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECC
T ss_pred             hhccCCCCceEEEEEccCCC----------CCceEEEEEEecCCcEEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcC
Confidence            35557789999999987521          011223456778889999999997      34 89999999999999997


Q ss_pred             cCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeeccc
Q psy4577          84 CVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHA  159 (384)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~  159 (384)
                      .+.....           .......+.  ..+.+|  ...|.+++|+|++ .++    |++|++||+.+...        
T Consensus       244 ~~~~~~~-----------~~~~~~~p~--~~l~~h--~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~--------  299 (524)
T 2j04_B          244 DNATDVH-----------VFKMCEKPS--LTLSLA--DSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEV--------  299 (524)
T ss_dssp             CCSSSSS-----------EEECCCSCS--EEECCT--TTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSS--------
T ss_pred             CCccccc-----------cceeecCce--EEEEcC--CCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCC--------
Confidence            6421100           000001111  133445  5789999999876 444    99999999853211        


Q ss_pred             ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE
Q psy4577         160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI  239 (384)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  239 (384)
                                                                                                  +...
T Consensus       300 ----------------------------------------------------------------------------~~~~  303 (524)
T 2j04_B          300 ----------------------------------------------------------------------------PSFY  303 (524)
T ss_dssp             ----------------------------------------------------------------------------CSEE
T ss_pred             ----------------------------------------------------------------------------ceEE
Confidence                                                                                        0122


Q ss_pred             EeecCCceEEE--EEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC--ceEEEEeCCCCCCeEEE
Q psy4577         240 KINHEGEVNRA--RYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK--EGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       240 ~~~~~~~v~~v--~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~s~~~~~~l~s  315 (384)
                      +.+|...|++|  +|+|++.++||||+.|++|+|||++        .+.  ....+.+|..  .|.+++|+|++ ..|++
T Consensus       304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~--------~~~--~~~~~~~~~~~~~v~~v~fsp~~-~~l~s  372 (524)
T 2j04_B          304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK--------DIA--TTKTTVSRFRGSNLVPVVYCPQI-YSYIY  372 (524)
T ss_dssp             EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG--------GHH--HHCEEEEECSCCSCCCEEEETTT-TEEEE
T ss_pred             eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC--------CCC--cccccccccccCcccceEeCCCc-CeEEE
Confidence            34688899999  5678763499999999999999996        332  3335566653  58899999998 69999


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      ++.|++|++||++++.       ++.++.+|.+.|++|+|||+++.+++.+..
T Consensus       373 ~~~d~tv~lwd~~~~~-------~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D  418 (524)
T 2j04_B          373 SDGASSLRAVPSRAAF-------AVHPLVSRETTITAIGVSRLHPMVLAGSAD  418 (524)
T ss_dssp             ECSSSEEEEEETTCTT-------CCEEEEECSSCEEEEECCSSCCBCEEEETT
T ss_pred             eCCCCcEEEEECcccc-------cceeeecCCCceEEEEeCCCCCeEEEEECC
Confidence            9999999999999987       888899999999999999999987765433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.9e-31  Score=228.29  Aligned_cols=257  Identities=14%  Similarity=0.128  Sum_probs=186.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc--CCCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP--NEPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~--~~~~~l~s~s~D~~i~   78 (384)
                      |+|+|++. +||+|+.||.|+|||+....          ...+....+.+|...|++++|+|  ++. +|++++.|++|+
T Consensus        17 ~~~~~~~~-~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~~dg~v~   84 (351)
T 3f3f_A           17 VVYDFYGR-HVATCSSDQHIKVFKLDKDT----------SNWELSDSWRAHDSSIVAIDWASPEYGR-IIASASYDKTVK   84 (351)
T ss_dssp             EEECSSSS-EEEEEETTSEEEEEEECSSS----------CCEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEETTSCEE
T ss_pred             EEEcCCCC-EEEEeeCCCeEEEEECCCCC----------CcceecceeccCCCcEEEEEEcCCCCCC-EEEEEcCCCeEE
Confidence            47999997 89999999999999998522          12356777889999999999999  577 889999999999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC--ceeee----cceeeeecccccccc
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD--VTRVI----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~----d~~v~~w~~~~~~~~  152 (384)
                      +||+..++.....               ........+.+|  ...+.+++|+|+  +..++    |+.+++||+......
T Consensus        85 vwd~~~~~~~~~~---------------~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  147 (351)
T 3f3f_A           85 LWEEDPDQEECSG---------------RRWNKLCTLNDS--KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL  147 (351)
T ss_dssp             EEEECTTSCTTSS---------------CSEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCT
T ss_pred             EEecCCCcccccc---------------cCcceeeeeccc--CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHh
Confidence            9999875221000               000011122233  677999999999  87776    899999998765432


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                      ..+....                                        .+..+.                           
T Consensus       148 ~~~~~~~----------------------------------------~~~~~~---------------------------  160 (351)
T 3f3f_A          148 RSWTLTS----------------------------------------EMKVLS---------------------------  160 (351)
T ss_dssp             TCCEEEE----------------------------------------EEESCS---------------------------
T ss_pred             ccccccc----------------------------------------cccccc---------------------------
Confidence            2111000                                        000000                           


Q ss_pred             CceeEEEEeecCCceEEEEEcCC---CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQ---NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL  309 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~  309 (384)
                           .....|...+.+++|+|+   + .++++++.|+.+.+|+..        .+....+..+.+|...|++++|+|++
T Consensus       161 -----~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~h~~~i~~~~~~p~~  226 (351)
T 3f3f_A          161 -----IPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGK--------DGKLHVAAKLPGHKSLIRSISWAPSI  226 (351)
T ss_dssp             -----CCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECT--------TSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred             -----cccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccC--------CCceeeeeecCCCCcceeEEEECCCC
Confidence                 001146778999999997   6 599999999999888765        44444577888999999999999997


Q ss_pred             C---CeEEEeeCCCcEEEEecCCCCCC---------------------------------------CccccceeeeeccC
Q psy4577         310 N---GYLLSASDDHTICLWDINATPKE---------------------------------------NRVIDAKTIFTGHT  347 (384)
Q Consensus       310 ~---~~l~s~s~Dg~i~iwd~~~~~~~---------------------------------------~~~~~~~~~~~~h~  347 (384)
                      +   .+|++|+.||.|++||++.+...                                       .....++..+.+|.
T Consensus       227 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  306 (351)
T 3f3f_A          227 GRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN  306 (351)
T ss_dssp             SCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred             CCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence            3   48999999999999999875210                                       00113677788999


Q ss_pred             CcEeEEEEecCCCccccccc
Q psy4577         348 AVVELELIERLTKKADPVCT  367 (384)
Q Consensus       348 ~~v~~~~~sp~~~~~~~~c~  367 (384)
                      ..|++++|+|+++.+++.+.
T Consensus       307 ~~v~~~~~s~~~~~l~s~~~  326 (351)
T 3f3f_A          307 GEVWSVSWNLTGTILSSAGD  326 (351)
T ss_dssp             SCEEEEEECSSSCCEEEEET
T ss_pred             ccEEEEEEcCCCCEEEEecC
Confidence            99999999999998776643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.5e-31  Score=244.98  Aligned_cols=320  Identities=11%  Similarity=0.085  Sum_probs=210.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccccc---ceEEEEEccC-CCcEEEEEecCCe
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA---KISDFSWNPN-EPWVICSVSEDNI   76 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~---~V~~l~~~~~-~~~~l~s~s~D~~   76 (384)
                      ++|+|+++.+|++++.|+.|++||+.+              .+.+..+.+|..   .|++++|+|+ +. +|++++.|+.
T Consensus       166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~  230 (615)
T 1pgu_A          166 CHLKQSRPMRSMTVGDDGSVVFYQGPP--------------FKFSASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRK  230 (615)
T ss_dssp             EEECSSSSCEEEEEETTTEEEEEETTT--------------BEEEEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCC
T ss_pred             EEECCCCCcEEEEEeCCCcEEEEeCCC--------------cceeeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCe
Confidence            468999976799999999999999876              477788899999   9999999999 88 8889999999


Q ss_pred             EEEEEcccCCCccch-----h----------------heeeeeeeEEEeccCCcccccceeee--eeccCeeEEEEecCc
Q psy4577          77 MQILSVVCVEPFDDA-----V----------------EERVINEEYKIWKKNTPFLYDLVMTH--ALEWPSLTAQWLPDV  133 (384)
Q Consensus        77 i~vwd~~~~~~~~~~-----~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~  133 (384)
                      |++||+.+++.....     .                .....++.+++|+.........+..+  .....+.++.|. ++
T Consensus       231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  309 (615)
T 1pgu_A          231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN  309 (615)
T ss_dssp             EEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET
T ss_pred             EEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC
Confidence            999999776432211     0                00113467888987755443333333  123567788886 66


Q ss_pred             eeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCc----------------cceeEEE------
Q psy4577         134 TRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD----------------YSIHRLI------  187 (384)
Q Consensus       134 ~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~------  187 (384)
                      ..++    ++.+++|+.........+..+..  ++.++.+ |+ ......+                ..+..+.      
T Consensus       310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~--~v~~~~~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~  385 (615)
T 1pgu_A          310 GRIISLSLDGTLNFYELGHDEVLKTISGHNK--GITALTV-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE  385 (615)
T ss_dssp             TEEEEEETTSCEEEEETTEEEEEEEECCCSS--CEEEEET-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTC
T ss_pred             CeEEEEECCCCEEEEECCCCcEEEEEeCCCC--CEEEEEe-cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcE
Confidence            6555    89999999887555444444332  2334444 33 1000000                0000000      


Q ss_pred             --EeeeccCCCCeEE------------EEEeecCCCC--------------------------------------ccccc
Q psy4577         188 --LGTHTSDEQNHLL------------IASVQLPNED--------------------------------------AQFDA  215 (384)
Q Consensus       188 --~~~~~~~~~~~~~------------i~~~~~~~~~--------------------------------------~~~~~  215 (384)
                        .+..    ...+.            +..+.+++++                                      ..+..
T Consensus       386 l~~~~~----d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  461 (615)
T 1pgu_A          386 YSSISW----DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV  461 (615)
T ss_dssp             CEEEET----TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred             EEEEeC----CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE
Confidence              0000    01111            1111111111                                      11111


Q ss_pred             ccc-cCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec
Q psy4577         216 SNY-DTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR  294 (384)
Q Consensus       216 ~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  294 (384)
                      ... |.....|...   .+.........|...|.+++|+|+++ +|++++.||.|++||+.        .+  +.+..+.
T Consensus       462 ~~~~d~~i~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~--------~~--~~~~~~~  527 (615)
T 1pgu_A          462 GLEEGNTIQVFKLS---DLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQ--------SR--EVKTSRW  527 (615)
T ss_dssp             EETTTSCEEEEETT---EEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------TT--EEEECCS
T ss_pred             eecCCCeEEEEECC---CccccccccCCccCceEEEEECCCCC-EEEEcCCCCeEEEeeCC--------CC--cceeEee
Confidence            111 2222222110   01111133456889999999999995 99999999999999986        33  3455677


Q ss_pred             C-CCCceEEEEeCC----------CCCCeEEEeeCCCcEEEEecCCC-CCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         295 G-HQKEGYGLSWNP----------SLNGYLLSASDDHTICLWDINAT-PKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       295 ~-h~~~i~~~~~s~----------~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      + |...|++++|+|          ++ .+|++|+.||+|++||+.++ +       ++..+.+|...|++++|+|+++ +
T Consensus       528 ~~h~~~v~~~~~sp~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~h~~~v~~l~~s~~~~-l  598 (615)
T 1pgu_A          528 AFRTSKINAISWKPAEKGANEEEIEE-DLVATGSLDTNIFIYSVKRPMK-------IIKALNAHKDGVNNLLWETPST-L  598 (615)
T ss_dssp             CCCSSCEEEEEECCCC------CCSC-CEEEEEETTSCEEEEESSCTTC-------CEEETTSSTTCEEEEEEEETTE-E
T ss_pred             cCCCCceeEEEEcCccccccccccCC-CEEEEEcCCCcEEEEECCCCce-------echhhhcCccceEEEEEcCCCC-e
Confidence            7 999999999999          98 79999999999999999987 5       8888999999999999999999 6


Q ss_pred             ccccc
Q psy4577         363 DPVCT  367 (384)
Q Consensus       363 ~~~c~  367 (384)
                      ++.+.
T Consensus       599 ~s~~~  603 (615)
T 1pgu_A          599 VSSGA  603 (615)
T ss_dssp             EEEET
T ss_pred             EEecC
Confidence            65543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.8e-31  Score=227.64  Aligned_cols=235  Identities=17%  Similarity=0.163  Sum_probs=169.2

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. +||+|+.|+.+++|++.....        .........+.+|.+.|.+++|+|++. .|++++.|++|++|
T Consensus       112 ~~~sp~g~-~lasg~~d~~i~v~~~~~~~~--------~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lw  181 (354)
T 2pbi_B          112 CAYAPSGC-AIACGGLDNKCSVYPLTFDKN--------ENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALW  181 (354)
T ss_dssp             EEECTTSS-EEEEESTTSEEEEEECCCCTT--------CCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEE
T ss_pred             EEECCCCC-EEEEeeCCCCEEEEEEecccc--------ccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEE
Confidence            47999997 799999999999999875221        111234456678999999999999998 77899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC--ceeee----cceeeeeccccccccce
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD--VTRVI----NEEYKIWKKNTPFLYDL  154 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~----d~~v~~w~~~~~~~~~~  154 (384)
                      |+.+++.             +           ..+.+|  ...|.+++|+|+  +..++    |+++++||+++......
T Consensus       182 d~~~~~~-------------~-----------~~~~~h--~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~  235 (354)
T 2pbi_B          182 DVESGQL-------------L-----------QSFHGH--GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA  235 (354)
T ss_dssp             ETTTCCE-------------E-----------EEEECC--SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             eCCCCeE-------------E-----------EEEcCC--CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            9987521             1           133344  567888999874  56666    99999999987655443


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      +..+..                                       .+..+.+++++..+.....|...+.|+..    ..
T Consensus       236 ~~~h~~---------------------------------------~v~~v~~~p~~~~l~s~s~D~~v~lwd~~----~~  272 (354)
T 2pbi_B          236 FETHES---------------------------------------DVNSVRYYPSGDAFASGSDDATCRLYDLR----AD  272 (354)
T ss_dssp             ECCCSS---------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEETT----TT
T ss_pred             ecCCCC---------------------------------------CeEEEEEeCCCCEEEEEeCCCeEEEEECC----CC
Confidence            333321                                       23344444444444444455554444321    11


Q ss_pred             eeEEEEe--ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCe
Q psy4577         235 IEIEIKI--NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGY  312 (384)
Q Consensus       235 ~~~~~~~--~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~  312 (384)
                      .......  .+...+.+++|+|++. +|++|+.|+.|++||+.        .+.  .+..+.+|...|++++|+|++ .+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~--------~~~--~~~~l~~h~~~v~~l~~spdg-~~  340 (354)
T 2pbi_B          273 REVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVL--------KGS--RVSILFGHENRVSTLRVSPDG-TA  340 (354)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------TCS--EEEEECCCSSCEEEEEECTTS-SC
T ss_pred             cEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECC--------CCc--eEEEEECCCCcEEEEEECCCC-CE
Confidence            1122222  2335789999999995 99999999999999986        333  456788999999999999999 79


Q ss_pred             EEEeeCCCcEEEEe
Q psy4577         313 LLSASDDHTICLWD  326 (384)
Q Consensus       313 l~s~s~Dg~i~iwd  326 (384)
                      |+||+.||+|+||+
T Consensus       341 l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          341 FCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEETTSEEEEEC
T ss_pred             EEEEcCCCCEEecC
Confidence            99999999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.8e-31  Score=251.82  Aligned_cols=260  Identities=14%  Similarity=0.175  Sum_probs=195.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|||+++ +||+|+.||.|+|||+.+              ...+..+.+|.+.|++++|+|+++ +|++++.||.|++|
T Consensus        19 i~~sp~~~-~la~~~~~g~v~iwd~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw   82 (814)
T 3mkq_A           19 IDFHPTEP-WVLTTLYSGRVEIWNYET--------------QVEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFRIRVF   82 (814)
T ss_dssp             EEECSSSS-EEEEEETTSEEEEEETTT--------------TEEEEEEECCSSCEEEEEEEGGGT-EEEEEETTSEEEEE
T ss_pred             EEECCCCC-EEEEEeCCCEEEEEECCC--------------CceEEEEecCCCcEEEEEEeCCCC-EEEEEeCCCeEEEE
Confidence            57999997 899999999999999976              467788889999999999999999 88899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccc-ccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTP-FLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~-~~~~~~  155 (384)
                      |+.+++.             +           ..+.+|  ...|.+++|+|+++.++    |+.+++|+.... .....+
T Consensus        83 ~~~~~~~-------------~-----------~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  136 (814)
T 3mkq_A           83 NYNTGEK-------------V-----------VDFEAH--PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (814)
T ss_dssp             ETTTCCE-------------E-----------EEEECC--SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE
T ss_pred             ECCCCcE-------------E-----------EEEecC--CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE
Confidence            9977521             1           122334  56799999999998887    899999998765 332222


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      ..+..  +..++.|.|.                                    ++..+.....|.....|..   ..+..
T Consensus       137 ~~~~~--~v~~~~~~p~------------------------------------~~~~l~~~~~dg~v~vwd~---~~~~~  175 (814)
T 3mkq_A          137 EGHEH--FVMCVAFNPK------------------------------------DPSTFASGCLDRTVKVWSL---GQSTP  175 (814)
T ss_dssp             ECCSS--CEEEEEEETT------------------------------------EEEEEEEEETTSEEEEEET---TCSSC
T ss_pred             cCCCC--cEEEEEEEcC------------------------------------CCCEEEEEeCCCeEEEEEC---CCCcc
Confidence            22221  2333444431                                    1111222222222222211   01122


Q ss_pred             eEEEEeecCCceEEEEEcC--CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577         236 EIEIKINHEGEVNRARYMP--QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l  313 (384)
                      .......+...+.+++|+|  ++. ++++++.||.|++||++        .+  ..+..+.+|...|.+++|+|++ .+|
T Consensus       176 ~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~--------~~--~~~~~~~~~~~~v~~~~~~~~~-~~l  243 (814)
T 3mkq_A          176 NFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQ--------TK--SCVATLEGHMSNVSFAVFHPTL-PII  243 (814)
T ss_dssp             SEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETT--------TT--EEEEEEECCSSCEEEEEECSSS-SEE
T ss_pred             eeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECC--------CC--cEEEEEcCCCCCEEEEEEcCCC-CEE
Confidence            2233334558999999999  885 99999999999999985        33  3466788999999999999999 699


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         314 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      ++++.||.|++||+.+++       .+..+..|...|++++|+|++..+
T Consensus       244 ~~~~~dg~v~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~  285 (814)
T 3mkq_A          244 ISGSEDGTLKIWNSSTYK-------VEKTLNVGLERSWCIATHPTGRKN  285 (814)
T ss_dssp             EEEETTSCEEEEETTTCS-------EEEEECCSSSSEEEEEECTTCGGG
T ss_pred             EEEeCCCeEEEEECCCCc-------EEEEeecCCCcEEEEEEccCCCce
Confidence            999999999999999988       889999999999999999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-30  Score=221.57  Aligned_cols=253  Identities=13%  Similarity=0.139  Sum_probs=181.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++| |++. +||+|+.||.|+|||+.+              ......+.+|...|.+++|+|++. +|++++.|+.|++|
T Consensus        24 ~~~-~~~~-~l~s~~~dg~v~vw~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~   86 (313)
T 3odt_A           24 VVA-VDDS-KVASVSRDGTVRLWSKDD--------------QWLGTVVYTGQGFLNSVCYDSEKE-LLLFGGKDTMINGV   86 (313)
T ss_dssp             EEE-EETT-EEEEEETTSEEEEEEESS--------------SEEEEEEEECSSCEEEEEEETTTT-EEEEEETTSCEEEE
T ss_pred             EEe-cCCC-EEEEEEcCCcEEEEECCC--------------CEEEEEeecCCccEEEEEECCCCC-EEEEecCCCeEEEE
Confidence            357 7786 799999999999999976              466777789999999999999999 88899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      ++.....                     ......+.+|  ...+.+++|.  +..++    ++.+++|+..  .....+.
T Consensus        87 ~~~~~~~---------------------~~~~~~~~~~--~~~i~~~~~~--~~~l~~~~~d~~i~~~d~~--~~~~~~~  139 (313)
T 3odt_A           87 PLFATSG---------------------EDPLYTLIGH--QGNVCSLSFQ--DGVVISGSWDKTAKVWKEG--SLVYNLQ  139 (313)
T ss_dssp             ETTCCTT---------------------SCC-CEECCC--SSCEEEEEEE--TTEEEEEETTSEEEEEETT--EEEEEEE
T ss_pred             EeeecCC---------------------CCcccchhhc--ccCEEEEEec--CCEEEEEeCCCCEEEEcCC--cEEEecc
Confidence            9976311                     0011123344  5678899993  44554    8999999821  1111112


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+.  .+...+.+.+.                                    ++..+.....|.....|.     .... 
T Consensus       140 ~~~--~~v~~~~~~~~------------------------------------~~~~l~~~~~d~~i~i~d-----~~~~-  175 (313)
T 3odt_A          140 AHN--ASVWDAKVVSF------------------------------------SENKFLTASADKTIKLWQ-----NDKV-  175 (313)
T ss_dssp             CCS--SCEEEEEEEET------------------------------------TTTEEEEEETTSCEEEEE-----TTEE-
T ss_pred             cCC--CceeEEEEccC------------------------------------CCCEEEEEECCCCEEEEe-----cCce-
Confidence            221  11222333221                                    122222222233322221     1122 


Q ss_pred             EEEEee-cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         237 IEIKIN-HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       237 ~~~~~~-~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      ...... |...|.+++|+|++.  +++++.||.|++||++        .+  +++..+.+|...|++++|+|++  .|++
T Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~--------~~--~~~~~~~~~~~~i~~~~~~~~~--~l~~  241 (313)
T 3odt_A          176 IKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMH--------TG--DVLRTYEGHESFVYCIKLLPNG--DIVS  241 (313)
T ss_dssp             EEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETT--------TC--CEEEEEECCSSCEEEEEECTTS--CEEE
T ss_pred             EEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECC--------ch--hhhhhhhcCCceEEEEEEecCC--CEEE
Confidence            233334 899999999999984  8899999999999986        33  3566888999999999999997  5899


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      ++.||.|++||+++++       ++..+..|...|++++|+|++..+
T Consensus       242 ~~~dg~v~iwd~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~  281 (313)
T 3odt_A          242 CGEDRTVRIWSKENGS-------LKQVITLPAISIWSVDCMSNGDII  281 (313)
T ss_dssp             EETTSEEEEECTTTCC-------EEEEEECSSSCEEEEEECTTSCEE
T ss_pred             EecCCEEEEEECCCCc-------eeEEEeccCceEEEEEEccCCCEE
Confidence            9999999999999998       899999999999999999999843

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.6e-31  Score=229.02  Aligned_cols=195  Identities=12%  Similarity=0.126  Sum_probs=140.6

Q ss_pred             CCCCCCCCceEE--EeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILA--SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~la--t~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~   78 (384)
                      |+|||||+ +||  +++.|++|+|||+.+              .+.+..+. |.+.|++|+|+|+|+ +|++++.|+ ++
T Consensus       139 v~fSpDg~-~la~as~~~d~~i~iwd~~~--------------~~~~~~~~-~~~~V~~v~fspdg~-~l~s~s~~~-~~  200 (365)
T 4h5i_A          139 VYISREGT-VAAIASSKVPAIMRIIDPSD--------------LTEKFEIE-TRGEVKDLHFSTDGK-VVAYITGSS-LE  200 (365)
T ss_dssp             EEECTTSS-CEEEEESCSSCEEEEEETTT--------------TEEEEEEE-CSSCCCEEEECTTSS-EEEEECSSC-EE
T ss_pred             EEEcCCCC-EEEEEECCCCCEEEEeECCC--------------CcEEEEeC-CCCceEEEEEccCCc-eEEecccee-EE
Confidence            47999998 555  555799999999986              35555554 777899999999999 778887554 55


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cc----eeeeecccccc
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NE----EYKIWKKNTPF  150 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~----~v~~w~~~~~~  150 (384)
                      +|+..+++.             ..         .....+|  ...+.+++|+|+++.++    ++    .+++|+.....
T Consensus       201 ~~~~~~~~~-------------~~---------~~~~~~~--~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~  256 (365)
T 4h5i_A          201 VISTVTGSC-------------IA---------RKTDFDK--NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN  256 (365)
T ss_dssp             EEETTTCCE-------------EE---------EECCCCT--TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE
T ss_pred             EEEeccCcc-------------ee---------eeecCCC--CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce
Confidence            665544311             00         0011122  45688999999998876    22    23333321100


Q ss_pred             ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577         151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS  230 (384)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  230 (384)
                      .                                                                               
T Consensus       257 ~-------------------------------------------------------------------------------  257 (365)
T 4h5i_A          257 T-------------------------------------------------------------------------------  257 (365)
T ss_dssp             E-------------------------------------------------------------------------------
T ss_pred             e-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             CCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceee-ecCCCCceEEEEeCCCC
Q psy4577         231 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLR-LRGHQKEGYGLSWNPSL  309 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~s~~~  309 (384)
                        .........+|...|++++|+|+++ +||+|+.|++|+|||++        ++  +++.. +.+|..+|++|+|||||
T Consensus       258 --~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~--------~~--~~~~~~~~gH~~~V~~v~fSpdg  324 (365)
T 4h5i_A          258 --SVLRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLK--------DL--SMSKIFKQAHSFAITEVTISPDS  324 (365)
T ss_dssp             --EEEEEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETT--------TT--EEEEEETTSSSSCEEEEEECTTS
T ss_pred             --cceeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECC--------CC--cEEEEecCcccCCEEEEEECCCC
Confidence              0011234457888999999999995 99999999999999986        33  34545 57999999999999999


Q ss_pred             CCeEEEeeCCCcEEEEecCCC
Q psy4577         310 NGYLLSASDDHTICLWDINAT  330 (384)
Q Consensus       310 ~~~l~s~s~Dg~i~iwd~~~~  330 (384)
                       ++|||||.|++|+|||+...
T Consensus       325 -~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          325 -TYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             -CEEEEEETTSEEEEEECCTT
T ss_pred             -CEEEEEeCCCeEEEEEcCCC
Confidence             79999999999999999754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.2e-31  Score=227.75  Aligned_cols=272  Identities=10%  Similarity=0.055  Sum_probs=190.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. +||+|+.|+.|+|||+....           .......+.+|...|++++|+|++..+|++++.|+.|++|
T Consensus        17 ~~~s~~~~-~l~~~~~d~~v~iw~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A           17 IKIIPSKS-LLLITSWDGSLTVYKFDIQA-----------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             EEEEGGGT-EEEEEETTSEEEEEEEETTT-----------TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             EEEcCCCC-EEEEEcCCCeEEEEEeCCCC-----------ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            47899987 79999999999999997621           0123445568999999999999977356799999999999


Q ss_pred             Ec-ccCCCccchhheeeeeeeEEEeccCCcccccceee--eeeccCeeEEEEecCceeee----cceeeeecccc-----
Q psy4577          81 SV-VCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMT--HALEWPSLTAQWLPDVTRVI----NEEYKIWKKNT-----  148 (384)
Q Consensus        81 d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~-----  148 (384)
                      |+ ..++.                         ..+.+  |  ...|.+++|+| +..++    |+.+++|++..     
T Consensus        85 d~~~~~~~-------------------------~~~~~~~~--~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~  136 (342)
T 1yfq_A           85 DLIGSPSF-------------------------QALTNNEA--NLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV  136 (342)
T ss_dssp             CSSSSSSE-------------------------EECBSCCC--CSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred             EeccCCce-------------------------EeccccCC--CCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence            99 76411                         12223  3  56799999999 77766    99999999865     


Q ss_pred             ----ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCC
Q psy4577         149 ----PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGD  224 (384)
Q Consensus       149 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~  224 (384)
                          ......+.   ......++.+.++.            +..+..    ...+.++.+.                .  
T Consensus       137 ~~~~~~~~~~~~---~~~~v~~~~~~~~~------------l~~~~~----d~~i~i~d~~----------------~--  179 (342)
T 1yfq_A          137 IAVKNLNSNNTK---VKNKIFTMDTNSSR------------LIVGMN----NSQVQWFRLP----------------L--  179 (342)
T ss_dssp             EEEEESCSSSSS---SCCCEEEEEECSSE------------EEEEES----TTEEEEEESS----------------C--
T ss_pred             ccccCCeeeEEe---eCCceEEEEecCCc------------EEEEeC----CCeEEEEECC----------------c--
Confidence                32221111   11112233332211            111111    1122222221                1  


Q ss_pred             CCCccCCCCceeEEEEeecCCceEEEEEcC-CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC-----
Q psy4577         225 FGGFGSVSGKIEIEIKINHEGEVNRARYMP-QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK-----  298 (384)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~-----  298 (384)
                           . ...........|...|.+++|+| ++. ++++++.||.|++|+++....    .....+...+.+|..     
T Consensus       180 -----~-~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  248 (342)
T 1yfq_A          180 -----C-EDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGD----DYNSSKRFAFRCHRLNLKDT  248 (342)
T ss_dssp             -----C-TTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCC----STTCTTCEEEECCCCCTTCC
T ss_pred             -----c-ccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCc----ccccccceeeeccccccccc
Confidence                 0 00112334456888999999999 985 999999999999999963200    000234567777755     


Q ss_pred             ----ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeecc-CCcEeEEEEecCCCcccccccccc
Q psy4577         299 ----EGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH-TAVVELELIERLTKKADPVCTLEK  370 (384)
Q Consensus       299 ----~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~~c~~~~  370 (384)
                          .|.+++|+|++ .+|++++.||.|++||+++++       .+..+.+| ...|++++  |++..+++.+....
T Consensus       249 ~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          249 NLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRK-------KIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             SSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE-------EEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             ccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHh-------HhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence                99999999998 799999999999999999988       88999998 99999999  99998887776665

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.98  E-value=5.9e-30  Score=218.25  Aligned_cols=263  Identities=14%  Similarity=0.200  Sum_probs=174.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEE--EecccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF--IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~   78 (384)
                      |+|||++  +||+|. |++|+|||+.+              .+++.  .+.+|...|++++|+|+++ +|++|+.|++|+
T Consensus        31 l~WS~~~--~lAvg~-D~tV~iWd~~t--------------g~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~   92 (318)
T 4ggc_A           31 VDWSSGN--VLAVAL-DNSVYLWSASS--------------GDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQ   92 (318)
T ss_dssp             EEECTTS--EEEEEE-TTEEEEEETTT--------------CCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEE
T ss_pred             EEECCCC--EEEEEe-CCEEEEEECCC--------------CCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEE
Confidence            4688875  788775 99999999986              23333  4457888999999999999 888999999999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccc-c
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLY-D  153 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~-~  153 (384)
                      +||+.+++.             +.           .+.+|  ...+.+  +++++..++    ++.+++|+....... .
T Consensus        93 iw~~~~~~~-------------~~-----------~~~~h--~~~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~  144 (318)
T 4ggc_A           93 LWDVQQQKR-------------LR-----------NMTSH--SARVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVA  144 (318)
T ss_dssp             EEETTTTEE-------------EE-----------EEECC--SSCEEE--EEEETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             EeecCCcee-------------EE-----------EecCc--cceEEE--eecCCCEEEEEecCCceEeeecCCCceeEE
Confidence            999987521             11           22233  233333  444555554    777888776543221 1


Q ss_pred             eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCC
Q psy4577         154 LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG  233 (384)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  233 (384)
                      .+..+..                                       .+..+.+.+.+..+.....|.....|........
T Consensus       145 ~~~~~~~---------------------------------------~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  185 (318)
T 4ggc_A          145 TLSGHSQ---------------------------------------EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG  185 (318)
T ss_dssp             EEECCSS---------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred             EEcCccC---------------------------------------ceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence            1111111                                       1112222222223333333333333322111112


Q ss_pred             ceeEEEEeecCCceEEEEEcCCCCcEE--EEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC
Q psy4577         234 KIEIEIKINHEGEVNRARYMPQNPCVI--ATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG  311 (384)
Q Consensus       234 ~~~~~~~~~~~~~v~~v~~~p~~~~~l--~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~  311 (384)
                      .........|.+.|.+++++|++..++  ++++.++.|++||.+        ...   ......|...+..+.|+|++ .
T Consensus       186 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~--------~~~---~~~~~~~~~~v~~~~~~~~~-~  253 (318)
T 4ggc_A          186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC--------SGA---CLSAVDAHSQVCSILWSPHY-K  253 (318)
T ss_dssp             SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT--------TCC---EEEEEECSSCEEEEEEETTT-T
T ss_pred             ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc--------ccc---ccccccceeeeeeeeecccc-c
Confidence            222444557888999999999876655  466788999999985        222   22344577789999999998 5


Q ss_pred             eEEEee--CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         312 YLLSAS--DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       312 ~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      .+++++  .|+.|++||+++++       ++.++.+|.+.|++++|+|+++.+++.+.
T Consensus       254 ~~~~~sg~~d~~i~iwd~~~~~-------~~~~l~gH~~~V~~l~~spdg~~l~S~s~  304 (318)
T 4ggc_A          254 ELISGHGFAQNQLVIWKYPTMA-------KVAELKGHTSRVLSLTMSPDGATVASAAA  304 (318)
T ss_dssp             EEEEEECTTTCCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             ceEEEEEcCCCEEEEEECCCCc-------EEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence            666544  79999999999998       99999999999999999999998876544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=7.2e-31  Score=231.45  Aligned_cols=276  Identities=17%  Similarity=0.149  Sum_probs=187.8

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc-CCCcEEEEEecCCeEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~-~~~~~l~s~s~D~~i~vw   80 (384)
                      +++|+...++++++.||.|+||++...+..          ......+.+|.+.|++++|+| ++. +|++|+.||+|++|
T Consensus        41 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~----------~~~~~~~~~h~~~V~~~~~~p~~~~-~l~s~s~dg~v~vw  109 (402)
T 2aq5_A           41 AVNPKFMALICEASGGGAFLVLPLGKTGRV----------DKNVPLVCGHTAPVLDIAWCPHNDN-VIASGSEDCTVMVW  109 (402)
T ss_dssp             EECSSEEEEEBCCSSSCCEEEEETTCCEEC----------CTTCCCBCCCSSCEEEEEECTTCTT-EEEEEETTSEEEEE
T ss_pred             EECCCeEEEEEEEcCCCEEEEEECccCCCC----------CCCCceEecCCCCEEEEEeCCCCCC-EEEEEeCCCeEEEE
Confidence            567776656677899999999999753211          123345679999999999999 777 88999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCc-eeee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV-TRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |+..+....               ...  .....+.+|  ...|.+++|+|++ ..++    |+.+++||+........+
T Consensus       110 ~~~~~~~~~---------------~~~--~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  170 (402)
T 2aq5_A          110 EIPDGGLVL---------------PLR--EPVITLEGH--TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL  170 (402)
T ss_dssp             ECCTTCCSS---------------CBC--SCSEEEECC--SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EccCCCCcc---------------ccC--CceEEecCC--CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE
Confidence            998752210               000  011234455  6789999999998 4555    899999999876544333


Q ss_pred             --ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCC
Q psy4577         156 --MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG  233 (384)
Q Consensus       156 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  233 (384)
                        ..+.  .                                     .+..+.+++++..+.....|.....|+.   ..+
T Consensus       171 ~~~~~~--~-------------------------------------~v~~~~~~~~~~~l~~~~~d~~i~iwd~---~~~  208 (402)
T 2aq5_A          171 GPDVHP--D-------------------------------------TIYSVDWSRDGALICTSCRDKRVRVIEP---RKG  208 (402)
T ss_dssp             CTTTCC--S-------------------------------------CEEEEEECTTSSCEEEEETTSEEEEEET---TTT
T ss_pred             ecCCCC--C-------------------------------------ceEEEEECCCCCEEEEEecCCcEEEEeC---CCC
Confidence              1121  1                                     1333344444444444444444333321   112


Q ss_pred             ceeEEEE-eecCCc-eEEEEEcCCCCcEEEEE---eCCCcEEEEecCCCCCCCCCCCCccceee-ecCCCCceEEEEeCC
Q psy4577         234 KIEIEIK-INHEGE-VNRARYMPQNPCVIATK---TPSSDVLVFDYTKHPSKPDPNGECHPDLR-LRGHQKEGYGLSWNP  307 (384)
Q Consensus       234 ~~~~~~~-~~~~~~-v~~v~~~p~~~~~l~s~---s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~s~  307 (384)
                      .. .... ..|.+. +.+++|+|++ .+|++|   +.|+.|++||++.        ... ++.. ...|...+.+++|+|
T Consensus       209 ~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~--------~~~-~~~~~~~~~~~~v~~~~~s~  277 (402)
T 2aq5_A          209 TV-VAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKH--------LEE-PLSLQELDTSSGVLLPFFDP  277 (402)
T ss_dssp             EE-EEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTB--------CSS-CSEEEECCCCSSCEEEEEET
T ss_pred             ce-eeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCcc--------ccC-CceEEeccCCCceeEEEEcC
Confidence            22 3333 577766 8999999998 499998   7999999999962        222 2222 235777899999999


Q ss_pred             CCCCeEE-EeeCCCcEEEEecCCCCCCCccccceeeeec--cCCcEeEEEEecCCCccccccc
Q psy4577         308 SLNGYLL-SASDDHTICLWDINATPKENRVIDAKTIFTG--HTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       308 ~~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      ++ .+|+ +|+.||.|++||+.+++.      .+..+..  |...|++++|+|++..+++.|.
T Consensus       278 ~~-~~l~~~g~~dg~i~i~d~~~~~~------~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~~  333 (402)
T 2aq5_A          278 DT-NIVYLCGKGDSSIRYFEITSEAP------FLHYLSMFSSKESQRGMGYMPKRGLEVNKCE  333 (402)
T ss_dssp             TT-TEEEEEETTCSCEEEEEECSSTT------CEEEEEEECCSSCCSEEEECCGGGSCGGGTE
T ss_pred             CC-CEEEEEEcCCCeEEEEEecCCCc------ceEeecccccCCcccceEEecccccceecce
Confidence            98 5775 566899999999998761      2555555  4589999999999998776654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.98  E-value=6.7e-31  Score=229.62  Aligned_cols=239  Identities=15%  Similarity=0.159  Sum_probs=169.9

Q ss_pred             CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec
Q psy4577          42 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE  121 (384)
Q Consensus        42 ~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (384)
                      ..+..++.||.+.|++++|+|+++ +|+||+.|++|++||+.+++             ...           .+.+|  .
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~-------------~~~-----------~~~~h--~  108 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQ-------------KTH-----------AIKLH--C  108 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTE-------------EEE-----------EEECC--C
T ss_pred             eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc-------------cce-----------EEecC--C
Confidence            567788999999999999999999 78899999999999997741             111           22333  5


Q ss_pred             cCeeEEEEecCceeee----cceeeeeccccccc-------cceeecccccccceeeeeccCCCCCCCCccceeEEEEee
Q psy4577         122 WPSLTAQWLPDVTRVI----NEEYKIWKKNTPFL-------YDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGT  190 (384)
Q Consensus       122 ~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (384)
                      ..|.+++|+|+++.++    |+.+++|++.....       ...+.++..                              
T Consensus       109 ~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~------------------------------  158 (380)
T 3iz6_a          109 PWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG------------------------------  158 (380)
T ss_dssp             TTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSS------------------------------
T ss_pred             CCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCc------------------------------
Confidence            5688999999999988    99999999854321       111111111                              


Q ss_pred             eccCCCCeEEEEEeecCCCC-cccccccccCcCCCCCCccCCCCceeEEEE-----eecCCceEEEEEcCCCCcEEEEEe
Q psy4577         191 HTSDEQNHLLIASVQLPNED-AQFDASNYDTDKGDFGGFGSVSGKIEIEIK-----INHEGEVNRARYMPQNPCVIATKT  264 (384)
Q Consensus       191 ~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~~p~~~~~l~s~s  264 (384)
                               .+..+.+.+++ ..+.....|...+.|+...   +. .....     .+|...|.+++|+|.+.++|++|+
T Consensus       159 ---------~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~---~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs  225 (380)
T 3iz6_a          159 ---------YASSCQYVPDQETRLITGSGDQTCVLWDVTT---GQ-RISIFGSEFPSGHTADVLSLSINSLNANMFISGS  225 (380)
T ss_dssp             ---------CCCCCBCCSSSSSCEEEECTTSCEEEECTTT---CC-EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred             ---------ceEEEEEecCCCCEEEEECCCCcEEEEEcCC---Cc-EEEEeecccCCCCccCeEEEEeecCCCCEEEEEE
Confidence                     11122222221 1233333444444432211   11 12222     468899999999884446999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee
Q psy4577         265 PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT  344 (384)
Q Consensus       265 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  344 (384)
                      .|++|++||++.         ...++..+.+|...|++++|+|++ .+|+||+.||+|++||+++++       ++..+.
T Consensus       226 ~D~~v~~wd~~~---------~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~-------~~~~~~  288 (380)
T 3iz6_a          226 CDTTVRLWDLRI---------TSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGH-------QLQVYN  288 (380)
T ss_dssp             TTSCEEEEETTT---------TCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTE-------EEEEEC
T ss_pred             CCCeEEEEECCC---------CCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCc-------EEEEec
Confidence            999999999862         223566889999999999999998 799999999999999999987       666665


Q ss_pred             ccC-------CcEeEEEEecCCCccccccc
Q psy4577         345 GHT-------AVVELELIERLTKKADPVCT  367 (384)
Q Consensus       345 ~h~-------~~v~~~~~sp~~~~~~~~c~  367 (384)
                      .+.       ..|++++|+|++..+++.+.
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~  318 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISGRLLFAGYS  318 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSSSEEEEECT
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEEC
Confidence            432       35899999999998776643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.98  E-value=4.3e-31  Score=229.73  Aligned_cols=266  Identities=15%  Similarity=0.219  Sum_probs=187.8

Q ss_pred             CCCCCCCC---ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc-CCCcEEEEEecCCe
Q psy4577           1 VQWSPHNE---TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWVICSVSEDNI   76 (384)
Q Consensus         1 v~fsp~~~---~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~-~~~~~l~s~s~D~~   76 (384)
                      ++|+|++.   .+||+|+.||.|+|||+.+              .+.+..+.+|...|++++|+| ++. +|++++.|++
T Consensus        75 ~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~  139 (366)
T 3k26_A           75 CAWTYDSNTSHPLLAVAGSRGIIRIINPIT--------------MQCIKHYVGHGNAINELKFHPRDPN-LLLSVSKDHA  139 (366)
T ss_dssp             EEEEECTTTCCEEEEEEETTCEEEEECTTT--------------CCEEEEEESCCSCEEEEEECSSCTT-EEEEEETTSC
T ss_pred             EEeccCCCCCCCEEEEecCCCEEEEEEchh--------------ceEeeeecCCCCcEEEEEECCCCCC-EEEEEeCCCe
Confidence            36888832   3899999999999999986              366777889999999999999 667 8899999999


Q ss_pred             EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccc
Q psy4577          77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~  152 (384)
                      |++||+..++             .+..+.        .+.+|  ...|.+++|+|++..++    |+.+++||+......
T Consensus       140 i~iwd~~~~~-------------~~~~~~--------~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  196 (366)
T 3k26_A          140 LRLWNIQTDT-------------LVAIFG--------GVEGH--RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM  196 (366)
T ss_dssp             EEEEETTTTE-------------EEEEEC--------STTSC--SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred             EEEEEeecCe-------------EEEEec--------ccccc--cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence            9999997751             111111        01223  66799999999998887    899999999765443


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                      ..+...        ..+.++....                                     .......            
T Consensus       197 ~~~~~~--------~~~~~~~~~~-------------------------------------~~~~~~~------------  219 (366)
T 3k26_A          197 NAIKES--------YDYNPNKTNR-------------------------------------PFISQKI------------  219 (366)
T ss_dssp             HHHHHH--------HTCCGGGCSS-------------------------------------CCCCEEE------------
T ss_pred             ccccee--------EEecCCCCcc-------------------------------------cccceee------------
Confidence            222110        1111111000                                     0000000            


Q ss_pred             CceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC----CCCCCccceeeecCCCCceEEEEeCCC
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP----DPNGECHPDLRLRGHQKEGYGLSWNPS  308 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~h~~~i~~~~~s~~  308 (384)
                      ..........|...|.+++|+  + .++++++.||.|++||++......    ........+..+.+|...|++++|+|+
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  296 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMD  296 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEEC
T ss_pred             ccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCC
Confidence            001123334689999999998  5 489999999999999997432110    001112346678889999999999999


Q ss_pred             --CCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeecc--CCcEeEEEEecCCCcccccccc
Q psy4577         309 --LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH--TAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       309 --~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                        + .+|++|+.||.|++||+++++...   .....+.+|  ...|++++|+|+++.+++.+..
T Consensus       297 ~~~-~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  356 (366)
T 3k26_A          297 FWQ-KMLALGNQVGKLYVWDLEVEDPHK---AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD  356 (366)
T ss_dssp             TTS-SEEEEECTTSCEEEEECCSSSGGG---CEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CCC-cEEEEEecCCcEEEEECCCCCCcc---ccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence              8 799999999999999999876111   133467777  7999999999999988876544

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=3e-30  Score=222.43  Aligned_cols=239  Identities=16%  Similarity=0.175  Sum_probs=169.9

Q ss_pred             eeEEEecccccceEEEEE-----cc-CCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCccccccee
Q psy4577          43 ELLFIHGGHTAKISDFSW-----NP-NEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVM  116 (384)
Q Consensus        43 ~~~~~~~gh~~~V~~l~~-----~~-~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (384)
                      .+..++.||.+.|++++|     ++ +++ +|+||+.|++|++||+...+...                 ........+.
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~-----------------~~~~~~~~l~   73 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNG-----------------YFGIPHKALT   73 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSS-----------------BSEEEEEEEC
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccc-----------------ccccccchhc
Confidence            456778999999999999     77 777 88999999999999997642100                 0001112344


Q ss_pred             eeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeec
Q psy4577         117 THALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHT  192 (384)
Q Consensus       117 ~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (384)
                      +|  ...|.+++|+|++..++    |+++++||+.+......+..+..                                
T Consensus        74 ~h--~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~--------------------------------  119 (343)
T 2xzm_R           74 GH--NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS--------------------------------  119 (343)
T ss_dssp             CC--SSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCS--------------------------------
T ss_pred             cC--CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC--------------------------------
Confidence            56  67899999999998887    99999999987655444333322                                


Q ss_pred             cCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEE--EEeecCCceEEEEEcCCCC---------cEEE
Q psy4577         193 SDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE--IKINHEGEVNRARYMPQNP---------CVIA  261 (384)
Q Consensus       193 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~v~~~p~~~---------~~l~  261 (384)
                             .+.++.+++++..++....|...+.|...    +.....  ....|...|.+++|+|++.         .+|+
T Consensus       120 -------~v~~v~~sp~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~  188 (343)
T 2xzm_R          120 -------EVYSVAFSPDNRQILSAGAEREIKLWNIL----GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA  188 (343)
T ss_dssp             -------CEEEEEECSSTTEEEEEETTSCEEEEESS----SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE
T ss_pred             -------cEEEEEECCCCCEEEEEcCCCEEEEEecc----CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEE
Confidence                   23444444444444444445544444321    111111  1126888999999999862         3899


Q ss_pred             EEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCcccccee
Q psy4577         262 TKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT  341 (384)
Q Consensus       262 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  341 (384)
                      +++.||.|++||.+         .  .....+.+|...|++++|+|+| .+|++|+.||+|++||+.....      +..
T Consensus       189 s~~~d~~i~iwd~~---------~--~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~------~~~  250 (343)
T 2xzm_R          189 SVGWDGRLKVWNTN---------F--QIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTY------PQR  250 (343)
T ss_dssp             EEETTSEEEEEETT---------T--EEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSS------CSE
T ss_pred             EEcCCCEEEEEcCC---------C--ceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcc------cce
Confidence            99999999999953         2  2455788999999999999999 7999999999999999965431      334


Q ss_pred             eeeccCCcEeEEEEecCCCccc
Q psy4577         342 IFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       342 ~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                      .+ .+...|++++|+|++..++
T Consensus       251 ~~-~~~~~v~~v~~sp~~~~la  271 (343)
T 2xzm_R          251 EF-DAGSTINQIAFNPKLQWVA  271 (343)
T ss_dssp             EE-ECSSCEEEEEECSSSCEEE
T ss_pred             ee-cCCCcEEEEEECCCCCEEE
Confidence            33 3556799999999987654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.9e-31  Score=235.67  Aligned_cols=233  Identities=9%  Similarity=0.004  Sum_probs=161.7

Q ss_pred             CCCCCCC-----CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCC
Q psy4577           1 VQWSPHN-----ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN   75 (384)
Q Consensus         1 v~fsp~~-----~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~   75 (384)
                      |+|+|++     ..+||+|+.||+|+|||+.......... .  ........+.+|...|++++|++++  .|++|+.||
T Consensus       213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-~--~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~Dg  287 (524)
T 2j04_B          213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-K--MCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNG  287 (524)
T ss_dssp             EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-E--CCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTS
T ss_pred             EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-e--eecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCC
Confidence            4688861     2489999999999999997532100000 0  0012234678999999999999863  688999999


Q ss_pred             eEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEE--EEecCc-eeee----cceeeeecccc
Q psy4577          76 IMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTA--QWLPDV-TRVI----NEEYKIWKKNT  148 (384)
Q Consensus        76 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~~~----d~~v~~w~~~~  148 (384)
                      +|++||+.+++.                       ....+.+|  ...|.++  .|+|++ ..++    |+++++||+++
T Consensus       288 tV~lWD~~~~~~-----------------------~~~~~~~H--~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~  342 (524)
T 2j04_B          288 FVAEFDLTDPEV-----------------------PSFYDQVH--DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD  342 (524)
T ss_dssp             EEEEEETTBCSS-----------------------CSEEEECS--SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred             EEEEEECCCCCC-----------------------ceEEeecc--cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence            999999976310                       11123455  6678888  578887 6666    99999999865


Q ss_pred             ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCc
Q psy4577         149 PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGF  228 (384)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~  228 (384)
                      ......+                                                                         
T Consensus       343 ~~~~~~~-------------------------------------------------------------------------  349 (524)
T 2j04_B          343 IATTKTT-------------------------------------------------------------------------  349 (524)
T ss_dssp             HHHHCEE-------------------------------------------------------------------------
T ss_pred             CCccccc-------------------------------------------------------------------------
Confidence            4331110                                                                         


Q ss_pred             cCCCCceeEEEEeecC--CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeC
Q psy4577         229 GSVSGKIEIEIKINHE--GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWN  306 (384)
Q Consensus       229 ~~~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  306 (384)
                                  .+|.  ..|.+++|+|+++ .+++++.|++|++||++        .+.  .+..+.+|.+.|++|+|+
T Consensus       350 ------------~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~--------~~~--~~~~l~gH~~~V~sva~S  406 (524)
T 2j04_B          350 ------------VSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSR--------AAF--AVHPLVSRETTITAIGVS  406 (524)
T ss_dssp             ------------EEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETT--------CTT--CCEEEEECSSCEEEEECC
T ss_pred             ------------ccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECc--------ccc--cceeeecCCCceEEEEeC
Confidence                        0122  2478899999996 79999999999999986        332  345678999999999999


Q ss_pred             CCCCCeEEEeeCCCcEEEEecCCCCCCC----------------------c---------------cccceeeeeccCCc
Q psy4577         307 PSLNGYLLSASDDHTICLWDINATPKEN----------------------R---------------VIDAKTIFTGHTAV  349 (384)
Q Consensus       307 ~~~~~~l~s~s~Dg~i~iwd~~~~~~~~----------------------~---------------~~~~~~~~~~h~~~  349 (384)
                      |++ .+|+||+.||+|++||+.......                      .               .-..+.++.+|...
T Consensus       407 p~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~  485 (524)
T 2j04_B          407 RLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGIN  485 (524)
T ss_dssp             SSC-CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCS
T ss_pred             CCC-CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCce
Confidence            999 699999999999999975421110                      0               00124456678888


Q ss_pred             EeEEEEecCCC
Q psy4577         350 VELELIERLTK  360 (384)
Q Consensus       350 v~~~~~sp~~~  360 (384)
                      |++|+|||+++
T Consensus       486 V~~Vafsp~~~  496 (524)
T 2j04_B          486 ITCTKWNETSA  496 (524)
T ss_dssp             CCCEEECCSTT
T ss_pred             EEEEECCCCCC
Confidence            99999999875

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.3e-30  Score=228.71  Aligned_cols=248  Identities=13%  Similarity=0.060  Sum_probs=157.7

Q ss_pred             CCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc--------CCCcEEEEEecCC
Q psy4577           4 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP--------NEPWVICSVSEDN   75 (384)
Q Consensus         4 sp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~--------~~~~~l~s~s~D~   75 (384)
                      +|++ .+||+|+.|++|+|||+.....         .....+..+.||.+.|++|+|+|        +++ +|||||.|+
T Consensus        98 ~~~~-~~las~~~d~~v~lw~~~~~~~---------~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~  166 (393)
T 4gq1_A           98 PVYS-LFLACVCQDNTVRLIITKNETI---------ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDC  166 (393)
T ss_dssp             CEEE-EEEEEEETTSCEEEEEEETTEE---------EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTS
T ss_pred             CCCC-CEEEEEeCCCcEEEEECCCCcc---------ceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCC
Confidence            3344 4899999999999999876210         00123445789999999999998        667 899999999


Q ss_pred             eEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCce-eee----cceeeeecccccc
Q psy4577          76 IMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT-RVI----NEEYKIWKKNTPF  150 (384)
Q Consensus        76 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~----d~~v~~w~~~~~~  150 (384)
                      +|||||+..+.             .+           ..+.+|  ..++.+++|+|++. .++    |+++++||.....
T Consensus       167 tv~~Wd~~~~~-------------~~-----------~~~~~~--~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~  220 (393)
T 4gq1_A          167 TLIIWRLTDEG-------------PI-----------LAGYPL--SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL  220 (393)
T ss_dssp             EEEEEEEETTE-------------EE-----------EEEEEC--SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred             eEEEEECCCCc-------------ee-----------eeecCC--CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence            99999997641             00           012233  56789999999986 454    9999999987654


Q ss_pred             ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577         151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS  230 (384)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  230 (384)
                      ..............                                   .+.....                        
T Consensus       221 ~~~~~~~~~~~~~~-----------------------------------~~~s~~~------------------------  241 (393)
T 4gq1_A          221 SAEENSQTELVKNP-----------------------------------WLLTLNT------------------------  241 (393)
T ss_dssp             ----------CSCC-----------------------------------CSEEEES------------------------
T ss_pred             ccccccccCCcccc-----------------------------------eEEeccc------------------------
Confidence            42211111000000                                   0000000                        


Q ss_pred             CCCceeEEEEeecCCceEEEEEc-CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCce---------
Q psy4577         231 VSGKIEIEIKINHEGEVNRARYM-PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEG---------  300 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~v~~~-p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i---------  300 (384)
                       ..........+|...+.++.|+ |++. .+++++.|+++++||+.....          ...+..|...+         
T Consensus       242 -~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~----------~~~l~~~~~~~~~~~~~~~~  309 (393)
T 4gq1_A          242 -LPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANND----------YNEISDSTMKLGPKNLLPNV  309 (393)
T ss_dssp             -GGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-----------------------------CCSCSE
T ss_pred             -ccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCC----------CceEeeecCccccEEEcccc
Confidence             0000122234688889999987 6775 999999999999999863221          11222222222         


Q ss_pred             ---------EEEEeCC-CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         301 ---------YGLSWNP-SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       301 ---------~~~~~s~-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                               ....|+| .+..++++|+.||+|++||+.+++       +...+.+|..+|++++|||||+.+++..
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~-------~~~~~~~~~~~V~svafspdG~~LA~as  378 (393)
T 4gq1_A          310 QGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD-------SNSIPIQLGMPIVDFCWHQDGSHLAIAT  378 (393)
T ss_dssp             EEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT-------CCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc-------EEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence                     2233333 332467888899999999999988       7778888999999999999999987654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.5e-30  Score=243.22  Aligned_cols=236  Identities=16%  Similarity=0.157  Sum_probs=181.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC--CCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~--~~~~l~s~s~D~~i~   78 (384)
                      ++|+|+++ +||+|+.||+|+|||+....            ......+.+|.+.|++++|+|+  +. +|++|+.||+|+
T Consensus        15 l~~s~dg~-~latg~~dg~I~vwd~~~~~------------~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~s~s~Dg~I~   80 (753)
T 3jro_A           15 AVLDYYGK-RLATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVL   80 (753)
T ss_dssp             ECCCSSSC-CEEEEETTTEEEEEEEETTE------------EEEEEEECCCSSCEEEEEECCTTSCS-EEEEEETTSCEE
T ss_pred             EEECCCCC-eEEEEECCCcEEEEecCCCC------------CccceeccCCcCceEEEEecCCCCCC-EEEEEeCCCeEE
Confidence            57999997 79999999999999987411            3667788999999999999988  77 889999999999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC--ceeee----cceeeeecccccccc
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD--VTRVI----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~----d~~v~~w~~~~~~~~  152 (384)
                      +||+.+++.             .         ....+.+|  ...|.+++|+|+  +..++    |+.+++||+......
T Consensus        81 vwd~~~~~~-------------~---------~~~~~~~h--~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~  136 (753)
T 3jro_A           81 IWKEENGRW-------------S---------QIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT  136 (753)
T ss_dssp             EEEEETTEE-------------E---------EEEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred             EEECCCCcc-------------c---------ccccccCC--CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence            999977410             0         00122233  667999999999  77776    889999987543210


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                      .                                                                               
T Consensus       137 ~-------------------------------------------------------------------------------  137 (753)
T 3jro_A          137 S-------------------------------------------------------------------------------  137 (753)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             CceeEEEEeecCCceEEEEEcCC-------------CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCc
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQ-------------NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE  299 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~-------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~  299 (384)
                          .....+|...|.+++|+|.             + .++++|+.||.|++||++..      .........+.+|..+
T Consensus       138 ----~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~------~~~~~~~~~~~~h~~~  206 (753)
T 3jro_A          138 ----PIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSD------AQTYVLESTLEGHSDW  206 (753)
T ss_dssp             ----CEEEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETT------TTEEEEEEEECCCSSC
T ss_pred             ----eeEeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCC------cccceeeeeecCCCCc
Confidence                1122357788899999984             6 48999999999999999731      1112445678899999


Q ss_pred             eEEEEeCCC---CCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         300 GYGLSWNPS---LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       300 i~~~~~s~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      |++++|+|+   + .+|++|+.||+|++||+++++.  .....+....+|...|++++|+|+++.+++.+.
T Consensus       207 V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~~--~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~  274 (753)
T 3jro_A          207 VRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQG--PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (753)
T ss_dssp             EEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSSS--CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred             EEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCCC--cceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence            999999999   7 7999999999999999998641  111133344568999999999999998776543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=1.8e-30  Score=230.29  Aligned_cols=277  Identities=7%  Similarity=0.027  Sum_probs=179.2

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+++ +||+|+.|+.|++||+.+.              +....+.+| ..+....|+|++. +|++++.|+.|++|
T Consensus        62 ~~~s~~g~-~l~~~~~d~~v~i~d~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~dg~i~iw  124 (420)
T 3vl1_A           62 NTFEKVGS-HLYKARLDGHDFLFNTIIR--------------DGSKMLKRA-DYTAVDTAKLQMR-RFILGTTEGDIKVL  124 (420)
T ss_dssp             CEEEEEET-TEEEEEETTEEEEEECCSE--------------ETTTTSCSC-CEEEEEEECSSSC-EEEEEETTSCEEEE
T ss_pred             eeeeecCC-eEEEEEcCCcEEEEEeccc--------------ceeeEEecC-CceEEEEEecCCC-EEEEEECCCCEEEE
Confidence            57999997 7999999999999999762              222233445 3455557899998 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+..++             ..           ..+.+|  ...|.+++|+|+++.++    |+++++||+........+.
T Consensus       125 d~~~~~-------------~~-----------~~~~~h--~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  178 (420)
T 3vl1_A          125 DSNFNL-------------QR-----------EIDQAH--VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI  178 (420)
T ss_dssp             CTTSCE-------------EE-----------EETTSS--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE
T ss_pred             eCCCcc-------------ee-----------eecccc--cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc
Confidence            987641             11           112234  67899999999998887    8999999998766554444


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce-
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI-  235 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-  235 (384)
                      .+..  ++.++.|.|+..          .+..+..    ...+.++.+.-   +.....  +....       ...... 
T Consensus       179 ~h~~--~v~~~~~~~~~~----------~l~s~~~----d~~v~iwd~~~---~~~~~~--~~~~~-------~~~~~v~  230 (420)
T 3vl1_A          179 GHRA--TVTDIAIIDRGR----------NVLSASL----DGTIRLWECGT---GTTIHT--FNRKE-------NPHDGVN  230 (420)
T ss_dssp             CCSS--CEEEEEEETTTT----------EEEEEET----TSCEEEEETTT---TEEEEE--ECBTT-------BTTCCEE
T ss_pred             CCCC--cEEEEEEcCCCC----------EEEEEcC----CCcEEEeECCC---CceeEE--eecCC-------CCCCCcc
Confidence            4432  244555555432          1111111    12223332210   000000  00000       000000 


Q ss_pred             eEEE--------EeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC
Q psy4577         236 EIEI--------KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP  307 (384)
Q Consensus       236 ~~~~--------~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~  307 (384)
                      ....        ...+...+.+++|+|++. +|++|+.||.|++||++        .+.. ......+|...|++++|+|
T Consensus       231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~--------~~~~-~~~~~~~~~~~v~~~~~~~  300 (420)
T 3vl1_A          231 SIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVF--------SKEQ-TIQLPSKFTCSCNSLTVDG  300 (420)
T ss_dssp             EEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETT--------TCCE-EEEECCTTSSCEEEEEECS
T ss_pred             EEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECC--------CCce-eEEcccccCCCceeEEEeC
Confidence            0000        011346677777889984 99999999999999996        3322 2233456889999999999


Q ss_pred             CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec-cCCcEeEEEEecCCCccccc
Q psy4577         308 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG-HTAVVELELIERLTKKADPV  365 (384)
Q Consensus       308 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~  365 (384)
                      ++..+|++|+.||.|++||+++++.      ++..+.+ |...|+++.| |++..+++.
T Consensus       301 ~~~~~l~~g~~dg~i~vwd~~~~~~------~~~~~~~~~~~~v~~~~~-~~~~~l~s~  352 (420)
T 3vl1_A          301 NNANYIYAGYENGMLAQWDLRSPEC------PVGEFLINEGTPINNVYF-AAGALFVSS  352 (420)
T ss_dssp             SCTTEEEEEETTSEEEEEETTCTTS------CSEEEEESTTSCEEEEEE-ETTEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEEcCCCcC------chhhhhccCCCCceEEEe-CCCCEEEEe
Confidence            9833999999999999999998752      5777776 6778888855 566655544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=2.1e-29  Score=212.59  Aligned_cols=194  Identities=18%  Similarity=0.306  Sum_probs=150.2

Q ss_pred             EEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCee
Q psy4577          46 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSL  125 (384)
Q Consensus        46 ~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  125 (384)
                      ..+.+|.+.|++++|+|+|+ +||+|+.|++|++||+....                      ..+...+.+|  ..+|.
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~----------------------~~~~~~l~gH--~~~V~   57 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGET----------------------HKLIDTLTGH--EGPVW   57 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSC----------------------BCCCEEECCC--SSCEE
T ss_pred             eeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCC----------------------cEEEEEEccc--cCCeE
Confidence            45679999999999999999 88999999999999986420                      0112345566  67899


Q ss_pred             EEEEecC--ceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeE
Q psy4577         126 TAQWLPD--VTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHL  199 (384)
Q Consensus       126 ~~~~~~~--~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (384)
                      +++|+|+  ++.++    |++|++||.......                                               
T Consensus        58 ~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~-----------------------------------------------   90 (297)
T 2pm7_B           58 RVDWAHPKFGTILASCSYDGKVMIWKEENGRWS-----------------------------------------------   90 (297)
T ss_dssp             EEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC-----------------------------------------------
T ss_pred             EEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE-----------------------------------------------
Confidence            9999864  66766    999999987532110                                               


Q ss_pred             EEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCC--CCcEEEEEeCCCcEEEEecCCC
Q psy4577         200 LIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQ--NPCVIATKTPSSDVLVFDYTKH  277 (384)
Q Consensus       200 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~s~s~dg~i~iwd~~~~  277 (384)
                                                          .......|...|++++|+|+  + .+|++|+.|+.|++||++. 
T Consensus        91 ------------------------------------~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~-  132 (297)
T 2pm7_B           91 ------------------------------------QIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKE-  132 (297)
T ss_dssp             ------------------------------------CCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCS-
T ss_pred             ------------------------------------EEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecC-
Confidence                                                01122357888999999997  6 4999999999999999962 


Q ss_pred             CCCCCCCCCccceeeecCCCCceEEEEeCCCC------------CCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec
Q psy4577         278 PSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL------------NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG  345 (384)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~------------~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  345 (384)
                             ........+.+|...|.+++|+|++            .++|++|+.|++|++||+++++.   ......++.+
T Consensus       133 -------~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~---~~~~~~~l~~  202 (297)
T 2pm7_B          133 -------NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ---TYVLESTLEG  202 (297)
T ss_dssp             -------SSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT---EEEEEEEECC
T ss_pred             -------CCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc---eEEEEEEecC
Confidence                   2222235678999999999999972            16999999999999999987642   1124567889


Q ss_pred             cCCcEeEEEEecCC
Q psy4577         346 HTAVVELELIERLT  359 (384)
Q Consensus       346 h~~~v~~~~~sp~~  359 (384)
                      |...|++++|+|++
T Consensus       203 H~~~V~~v~~sp~~  216 (297)
T 2pm7_B          203 HSDWVRDVAWSPTV  216 (297)
T ss_dssp             CSSCEEEEEECCCC
T ss_pred             CCCceEEEEECCCC
Confidence            99999999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=3.2e-29  Score=215.78  Aligned_cols=240  Identities=16%  Similarity=0.132  Sum_probs=169.7

Q ss_pred             eeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeecc
Q psy4577          43 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEW  122 (384)
Q Consensus        43 ~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (384)
                      ++..+|.||.+.|++|+|+|++..+|+|||.|++|++||+...+.                   ........+.+|  ..
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~-------------------~~~~~~~~l~~h--~~   87 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET-------------------NYGIPQRALRGH--SH   87 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS-------------------CSEEEEEEECCC--SS
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc-------------------ccceeeEEEeCC--CC
Confidence            566789999999999999998655899999999999999976421                   111122244455  67


Q ss_pred             CeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577         123 PSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH  198 (384)
Q Consensus       123 ~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (384)
                      .|.+++|+|+++.++    |+.+++|+................                                     
T Consensus        88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~-------------------------------------  130 (340)
T 4aow_A           88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD-------------------------------------  130 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------------------------------
T ss_pred             CEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc-------------------------------------
Confidence            899999999999887    899999998765443322221111                                     


Q ss_pred             EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCC-cEEEEEeCCCcEEEEecCCC
Q psy4577         199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNP-CVIATKTPSSDVLVFDYTKH  277 (384)
Q Consensus       199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~~l~s~s~dg~i~iwd~~~~  277 (384)
                        +....+.+.+..+.....|.....|..   ...........+|...+..++|++++. .++++++.|+.|++||++  
T Consensus       131 --~~~~~~~~~~~~l~s~s~d~~~~~~d~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~--  203 (340)
T 4aow_A          131 --VLSVAFSSDNRQIVSGSRDKTIKLWNT---LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA--  203 (340)
T ss_dssp             --EEEEEECTTSSCEEEEETTSCEEEECT---TSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT--
T ss_pred             --eeEEEEeecCccceeecCCCeEEEEEe---CCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC--
Confidence              111111222222222223333222211   011222333457889999999998753 378899999999999986  


Q ss_pred             CCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEec
Q psy4577         278 PSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIER  357 (384)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp  357 (384)
                            .+  ..+..+.+|.++|++++|+|++ .+|++|+.||+|++||+++.+       ++..+.++ ..|++++|+|
T Consensus       204 ------~~--~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~-------~~~~~~~~-~~v~~~~~~~  266 (340)
T 4aow_A          204 ------NC--KLKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGK-------HLYTLDGG-DIINALCFSP  266 (340)
T ss_dssp             ------TT--EEEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTE-------EEEEEECS-SCEEEEEECS
T ss_pred             ------CC--ceeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCc-------eeeeecCC-ceEEeeecCC
Confidence                  33  3456888999999999999998 799999999999999999987       77777654 6799999999


Q ss_pred             CCCcccc
Q psy4577         358 LTKKADP  364 (384)
Q Consensus       358 ~~~~~~~  364 (384)
                      ++..+.+
T Consensus       267 ~~~~~~~  273 (340)
T 4aow_A          267 NRYWLCA  273 (340)
T ss_dssp             SSSEEEE
T ss_pred             CCceeec
Confidence            8875543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=4.3e-29  Score=220.40  Aligned_cols=247  Identities=15%  Similarity=0.213  Sum_probs=171.6

Q ss_pred             CCCCC-CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEE-----EecccccceEEEEEccCCCcEEEEEecC
Q psy4577           1 VQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF-----IHGGHTAKISDFSWNPNEPWVICSVSED   74 (384)
Q Consensus         1 v~fsp-~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~gh~~~V~~l~~~~~~~~~l~s~s~D   74 (384)
                      |+|+| ++. +||+|+.||.|+|||+.+.......      ......     ...+|...|++++|+|++..+|++++.|
T Consensus        49 ~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  121 (408)
T 4a11_B           49 LDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYY------TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD  121 (408)
T ss_dssp             EEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCE------EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred             EEEecCCCC-EEEEEcCCCeEEEEECCCCcccceE------eccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence            47999 776 8999999999999999863211000      000000     0136999999999999544488899999


Q ss_pred             CeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCce---eee----cceeeeeccc
Q psy4577          75 NIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT---RVI----NEEYKIWKKN  147 (384)
Q Consensus        75 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~----d~~v~~w~~~  147 (384)
                      +.|++||+.+++             ....+.              ....+.++.|+|.+.   .++    ++.+++|++.
T Consensus       122 ~~i~iwd~~~~~-------------~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B          122 KTLKVWDTNTLQ-------------TADVFN--------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             SEEEEEETTTTE-------------EEEEEE--------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             CeEEEeeCCCCc-------------cceecc--------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            999999998751             111111              144577888888553   444    6777777654


Q ss_pred             cccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCC
Q psy4577         148 TPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGG  227 (384)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~  227 (384)
                      ....                                                                            
T Consensus       175 ~~~~----------------------------------------------------------------------------  178 (408)
T 4a11_B          175 SGSC----------------------------------------------------------------------------  178 (408)
T ss_dssp             SSCC----------------------------------------------------------------------------
T ss_pred             Ccce----------------------------------------------------------------------------
Confidence            3211                                                                            


Q ss_pred             ccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC------CCCCCccceeeecCCCCceE
Q psy4577         228 FGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP------DPNGECHPDLRLRGHQKEGY  301 (384)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~~~~~~~~~~~~~h~~~i~  301 (384)
                               ......|...|.+++|+|+++.+|++|+.||.|++||++......      ...........+.+|...|.
T Consensus       179 ---------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  249 (408)
T 4a11_B          179 ---------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN  249 (408)
T ss_dssp             ---------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred             ---------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence                     122336788899999999997679999999999999997422100      00001111223367899999


Q ss_pred             EEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCC----------------------------------------cccccee
Q psy4577         302 GLSWNPSLNGYLLSASDDHTICLWDINATPKEN----------------------------------------RVIDAKT  341 (384)
Q Consensus       302 ~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~----------------------------------------~~~~~~~  341 (384)
                      +++|+|++ .+|++++.||.|++||+++++...                                        ..-.++.
T Consensus       250 ~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~  328 (408)
T 4a11_B          250 GLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT  328 (408)
T ss_dssp             EEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred             EEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence            99999998 799999999999999998764210                                        0112466


Q ss_pred             eeeccCCcEeEEEEecCCCccccccc
Q psy4577         342 IFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       342 ~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      .+.+|...|++++|+|+++.+++.+.
T Consensus       329 ~~~~~~~~v~~~~~s~~~~~l~s~~~  354 (408)
T 4a11_B          329 MLKGHYKTVDCCVFQSNFQELYSGSR  354 (408)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEET
T ss_pred             eeccCCCeEEEEEEcCCCCEEEEECC
Confidence            67889999999999999988776643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.5e-30  Score=230.60  Aligned_cols=280  Identities=11%  Similarity=0.111  Sum_probs=179.5

Q ss_pred             CCCCC-CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp-~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      |+|+| ++. +||+|+.||+|+|||+.+...        .........+ +|.+.|++++|+|++. +|++++.|++|++
T Consensus        69 ~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~--------~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~s~dg~i~v  137 (437)
T 3gre_A           69 SAVSPGETP-YLITGSDQGVIKIWNLKEIIV--------GEVYSSSLTY-DCSSTVTQITMIPNFD-AFAVSSKDGQIIV  137 (437)
T ss_dssp             EEEECSSSC-EEEEEETTSEEEEEEHHHHHT--------TCCCSCSEEE-ECSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred             EEECCCCCC-EEEEecCCceEEEeECccccc--------Ccccceeeec-cCCCCEEEEEEeCCCC-EEEEEeCCCEEEE
Confidence            47899 886 899999999999999864110        0001112222 5899999999999998 8889999999999


Q ss_pred             EEcc---cCCCccchhheeeeeeeEEEeccCCcccccceeeee--eccCeeEEE--EecCceeee----cceeeeecccc
Q psy4577          80 LSVV---CVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHA--LEWPSLTAQ--WLPDVTRVI----NEEYKIWKKNT  148 (384)
Q Consensus        80 wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~--~~~~~~~~~----d~~v~~w~~~~  148 (384)
                      ||+.   .++..             +..... . + ..+..+.  ....+.++.  +++++..++    |+.+++||+..
T Consensus       138 wd~~~~~~~~~~-------------~~~~~~-~-i-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  201 (437)
T 3gre_A          138 LKVNHYQQESEV-------------KFLNCE-C-I-RKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT  201 (437)
T ss_dssp             EEEEEEEETTEE-------------EEEEEE-E-E-EEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred             EEeccccCCcee-------------eccccc-e-e-EEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            9995   22111             000000 0 0 0010011  244566666  557888877    89999999987


Q ss_pred             ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCc
Q psy4577         149 PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGF  228 (384)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~  228 (384)
                      ......+.......                                     .+.++.+++++..+.....|.....|+. 
T Consensus       202 ~~~~~~~~~~~h~~-------------------------------------~v~~~~~s~~~~~l~s~~~dg~i~iwd~-  243 (437)
T 3gre_A          202 LERLQIIENSPRHG-------------------------------------AVSSICIDEECCVLILGTTRGIIDIWDI-  243 (437)
T ss_dssp             CCEEEEEECCGGGC-------------------------------------CEEEEEECTTSCEEEEEETTSCEEEEET-
T ss_pred             CeeeEEEccCCCCC-------------------------------------ceEEEEECCCCCEEEEEcCCCeEEEEEc-
Confidence            65544433311111                                     2333444444444444444444444322 


Q ss_pred             cCCCCceeEEEE-eecCCceEEEEEcC----CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccce-------------
Q psy4577         229 GSVSGKIEIEIK-INHEGEVNRARYMP----QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPD-------------  290 (384)
Q Consensus       229 ~~~~~~~~~~~~-~~~~~~v~~v~~~p----~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-------------  290 (384)
                         ......... ..|...|.+++|+|    ++ .+|++|+.||.|++||++.        +.....             
T Consensus       244 ---~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~~~~~~  311 (437)
T 3gre_A          244 ---RFNVLIRSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVK--------GHCQYAFINSDEQPSMEHF  311 (437)
T ss_dssp             ---TTTEEEEEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTT--------TEEEEEEESSSSCCCGGGG
T ss_pred             ---CCccEEEEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCC--------CcEEEEEEcCCCCCcccee
Confidence               112223333 36788999996665    45 4999999999999999962        221110             


Q ss_pred             ---------eeecC--CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec--------------
Q psy4577         291 ---------LRLRG--HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG--------------  345 (384)
Q Consensus       291 ---------~~~~~--h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--------------  345 (384)
                               ..+.+  |...|++++|+ ++ .+|++|+.||.|++||+++++       ....+.+              
T Consensus       312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~  382 (437)
T 3gre_A          312 LPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFSLNELS-------SSKAVISPSRFSDVFIPTQVT  382 (437)
T ss_dssp             SCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETTCGG-------GCEEEECC--CCCEEEEEEEE
T ss_pred             cccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECCCcc-------cceEEecccccCceEEEEEee
Confidence                     02333  77789999999 66 699999999999999999887       5555544              


Q ss_pred             -----------------------cCCcEeEEEEecC--CCcccccc
Q psy4577         346 -----------------------HTAVVELELIERL--TKKADPVC  366 (384)
Q Consensus       346 -----------------------h~~~v~~~~~sp~--~~~~~~~c  366 (384)
                                             |...|++++|+++  ++.+++..
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~  428 (437)
T 3gre_A          383 ANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD  428 (437)
T ss_dssp             TTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred             cceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence                                   8899999999998  44444443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-29  Score=222.87  Aligned_cols=263  Identities=15%  Similarity=0.178  Sum_probs=180.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. +||+|+.|+.|+|||...               ..+..+.+|...|.+++|+|++. +|++++.|+.|++|
T Consensus       114 ~~~s~~~~-~l~~~~~dg~i~i~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw  176 (425)
T 1r5m_A          114 LAWSHDGN-SIVTGVENGELRLWNKTG---------------ALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILW  176 (425)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTS---------------CEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEE
T ss_pred             EEEcCCCC-EEEEEeCCCeEEEEeCCC---------------CeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEE
Confidence            47999997 899999999999999442               66777889999999999999999 77899999999999


Q ss_pred             EcccCCCccchh--------------------------------heeeeeeeEEEeccCCcccccceeeeeeccCeeEEE
Q psy4577          81 SVVCVEPFDDAV--------------------------------EERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ  128 (384)
Q Consensus        81 d~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  128 (384)
                      |+.+++......                                .....++.+.+|+.........+.+|  ...+.+++
T Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~--~~~i~~~~  254 (425)
T 1r5m_A          177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH--HGPISVLE  254 (425)
T ss_dssp             ETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCC--SSCEEEEE
T ss_pred             ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccC--CCceEEEE
Confidence            997763211000                                00112456777776655443444444  56788888


Q ss_pred             EecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEe
Q psy4577         129 WLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASV  204 (384)
Q Consensus       129 ~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  204 (384)
                      |+|+++.++    ++.+++|+.........+..+..  ++..+.|.+                                 
T Consensus       255 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~---------------------------------  299 (425)
T 1r5m_A          255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ--SIVSASWVG---------------------------------  299 (425)
T ss_dssp             EETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSS--CEEEEEEET---------------------------------
T ss_pred             ECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCc--cEEEEEECC---------------------------------
Confidence            888887776    78888888876554433322211  122333332                                 


Q ss_pred             ecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCC--
Q psy4577         205 QLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPD--  282 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~--  282 (384)
                          ++ .+.....|.....|..    ...........|...|.+++|+|++. +|++++.||.|++||++.......  
T Consensus       300 ----~~-~l~~~~~d~~i~i~d~----~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~  369 (425)
T 1r5m_A          300 ----DD-KVISCSMDGSVRLWSL----KQNTLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSL  369 (425)
T ss_dssp             ----TT-EEEEEETTSEEEEEET----TTTEEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHHC-----
T ss_pred             ----CC-EEEEEeCCCcEEEEEC----CCCcEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCccceeee
Confidence                22 2222223332222211    11223555667899999999999995 999999999999999863110000  


Q ss_pred             ---C-----CCCccceeeecCCCC--ceEEEEeCCCCCCeEEEeeCCCcEEEEecC
Q psy4577         283 ---P-----NGECHPDLRLRGHQK--EGYGLSWNPSLNGYLLSASDDHTICLWDIN  328 (384)
Q Consensus       283 ---~-----~~~~~~~~~~~~h~~--~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~  328 (384)
                         .     .....++..+.+|..  .|++++|+|++ .+|++++.||.|++||++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          370 YGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-NKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ---------CEECCEEEEECCTTCCCCEEEEEECTTS-SEEEEEESSSCCEEEECC
T ss_pred             ecccccccCcccchhhhhhcCcccCCceEEEEccCCC-ceEEEEecCceEEEEeec
Confidence               0     000115668888976  99999999998 799999999999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=2.8e-29  Score=215.79  Aligned_cols=266  Identities=9%  Similarity=0.018  Sum_probs=183.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+|+ ++|++..++.+.+|+...              ........+|.+.|++++|+|+++ +|++++ |+.|++|
T Consensus        15 ~~~s~dg~-~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw   77 (337)
T 1gxr_A           15 FHVTADGQ-MQPVPFPPDALIGPGIPR--------------HARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVW   77 (337)
T ss_dssp             EEECSSSC-EEECCCCTTSSSSTTCCS--------------EEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEE
T ss_pred             EEECCCCC-EEEeecCCCcEeccccCC--------------ccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEE
Confidence            47999998 788888777777776543              122333358999999999999999 777888 9999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+..++..                   ..  ...+..+.....+.+++|+|+++.++    ++.+++|+...........
T Consensus        78 ~~~~~~~~-------------------~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  136 (337)
T 1gxr_A           78 DISHPGNK-------------------SP--VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE  136 (337)
T ss_dssp             ETTSTTCC-------------------SC--SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE
T ss_pred             ECCCCCce-------------------ee--eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeee
Confidence            99774211                   00  01111112366799999999998877    8999999987654211111


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      ......++..+.|                                     ++++..+.....|.....|..    .....
T Consensus       137 ~~~~~~~i~~~~~-------------------------------------~~~~~~l~~~~~dg~v~~~d~----~~~~~  175 (337)
T 1gxr_A          137 LTSSAPACYALAI-------------------------------------SPDSKVCFSCCSDGNIAVWDL----HNQTL  175 (337)
T ss_dssp             EECSSSCEEEEEE-------------------------------------CTTSSEEEEEETTSCEEEEET----TTTEE
T ss_pred             cccCCCceEEEEE-------------------------------------CCCCCEEEEEeCCCcEEEEeC----CCCce
Confidence            1111111223333                                     333333333333333322211    12223


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ......|...|.+++|+|++. +|++++.||.|++||++        .+.  .+..+ .|...+.+++|+|++ .+|+++
T Consensus       176 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~--------~~~--~~~~~-~~~~~v~~~~~s~~~-~~l~~~  242 (337)
T 1gxr_A          176 VRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLR--------EGR--QLQQH-DFTSQIFSLGYCPTG-EWLAVG  242 (337)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT--------TTE--EEEEE-ECSSCEEEEEECTTS-SEEEEE
T ss_pred             eeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECC--------CCc--eEeee-cCCCceEEEEECCCC-CEEEEE
Confidence            455567999999999999995 99999999999999986        332  23233 477889999999998 799999


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      +.|+.|++||+++.+       . ..+..|...|++++|+|+++.+++.+
T Consensus       243 ~~~~~i~~~~~~~~~-------~-~~~~~~~~~v~~~~~~~~~~~l~~~~  284 (337)
T 1gxr_A          243 MESSNVEVLHVNKPD-------K-YQLHLHESCVLSLKFAYCGKWFVSTG  284 (337)
T ss_dssp             ETTSCEEEEETTSSC-------E-EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCCcEEEEECCCCC-------e-EEEcCCccceeEEEECCCCCEEEEec
Confidence            999999999999874       3 45778999999999999999776654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=2e-29  Score=222.00  Aligned_cols=237  Identities=16%  Similarity=0.285  Sum_probs=169.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|++. +||+|+.||.|+|||+.+              .+.+..+.+|...|.+++|+  +. +|++++.|+.|++|
T Consensus       140 v~~s~~~~-~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~  201 (401)
T 4aez_A          140 VKWSHDGS-FLSVGLGNGLVDIYDVES--------------QTKLRTMAGHQARVGCLSWN--RH-VLSSGSRSGAIHHH  201 (401)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTT--------------CCEEEEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEE
T ss_pred             EEECCCCC-EEEEECCCCeEEEEECcC--------------CeEEEEecCCCCceEEEEEC--CC-EEEEEcCCCCEEEE
Confidence            47999997 899999999999999986              36677888999999999995  34 88899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.....                       ....+.+|  ...|.+++|+|++..++    |+.|++||+........+.
T Consensus       202 d~~~~~~-----------------------~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  256 (401)
T 4aez_A          202 DVRIANH-----------------------QIGTLQGH--SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT  256 (401)
T ss_dssp             ETTSSSC-----------------------EEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC
T ss_pred             ecccCcc-----------------------eeeEEcCC--CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec
Confidence            9974310                       01123334  66799999999998887    8999999998755443333


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+..  +..++.|.|+..         ..+..+..  .....+.++.+.                          .+.  
T Consensus       257 ~~~~--~v~~~~~~p~~~---------~ll~~~~g--s~d~~i~i~d~~--------------------------~~~--  295 (401)
T 4aez_A          257 NHNA--AVKAVAWCPWQS---------NLLATGGG--TMDKQIHFWNAA--------------------------TGA--  295 (401)
T ss_dssp             CCSS--CCCEEEECTTST---------TEEEEECC--TTTCEEEEEETT--------------------------TCC--
T ss_pred             CCcc--eEEEEEECCCCC---------CEEEEecC--CCCCEEEEEECC--------------------------CCC--
Confidence            3222  234455554332         01111100  011222222221                          111  


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEE--EeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIAT--KTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                      ......+...|.+++|+|+++ ++++  |+.||.|++||++        .+.......+.+|...|.+++|+|++ .+|+
T Consensus       296 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~g~~dg~i~v~~~~--------~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~  365 (401)
T 4aez_A          296 RVNTVDAGSQVTSLIWSPHSK-EIMSTHGFPDNNLSIWSYS--------SSGLTKQVDIPAHDTRVLYSALSPDG-RILS  365 (401)
T ss_dssp             EEEEEECSSCEEEEEECSSSS-EEEEEECTTTCEEEEEEEE--------TTEEEEEEEEECCSSCCCEEEECTTS-SEEE
T ss_pred             EEEEEeCCCcEEEEEECCCCC-eEEEEeecCCCcEEEEecC--------CccceeEEEecCCCCCEEEEEECCCC-CEEE
Confidence            222335778899999999996 7777  4589999999997        44455566788999999999999998 7999


Q ss_pred             EeeCCCcEEEEecCCCC
Q psy4577         315 SASDDHTICLWDINATP  331 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~~~  331 (384)
                      +++.||.|++||+.+++
T Consensus       366 s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          366 TAASDENLKFWRVYDGD  382 (401)
T ss_dssp             EECTTSEEEEEECCC--
T ss_pred             EEeCCCcEEEEECCCCc
Confidence            99999999999999887

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=1e-29  Score=254.50  Aligned_cols=318  Identities=12%  Similarity=0.100  Sum_probs=217.2

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. ++++++.|+.|++||+.+              ......+.+|.+.|++++|+|++. .|++++.|++|++|
T Consensus       846 ~~~sp~~~-~l~~~~~dg~v~vwd~~~--------------~~~~~~~~~h~~~v~~v~~spdg~-~l~s~s~dg~v~vw  909 (1249)
T 3sfz_A          846 CDFSPYDH-LAVIALSQYCVELWNIDS--------------RLKVADCRGHLSWVHGVMFSPDGS-SFLTASDDQTIRVW  909 (1249)
T ss_dssp             EEECSSTT-EEEEECSSSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred             EEEcCCCC-EEEEEeCCCeEEEEEcCC--------------CceeeecCCCccceEEEEECCCCC-EEEEEeCCCeEEEE
Confidence            46899997 799999999999999986              467788899999999999999999 78899999999999


Q ss_pred             EcccCCCccchhheee----------------eeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cce
Q psy4577          81 SVVCVEPFDDAVEERV----------------INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEE  140 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~  140 (384)
                      ++..............                ....+..+.......     .......+.+++|+|++..++    ++.
T Consensus       910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~sp~g~~l~~g~~~g~  984 (1249)
T 3sfz_A          910 ETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI-----DYLPEAQVSCCCLSPHLEYVAFGDEDGA  984 (1249)
T ss_dssp             EHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE-----EEECCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE-----EEcccCcEEEEEEcCCCCEEEEEcCCCC
Confidence            9865311110000000                001111222111111     111245688999999999887    899


Q ss_pred             eeeeccccccccceeecccccccceeeeeccCCCC--CCCCccceeEEEEeeec--cCCCCeEEEEEeecCCCCcccccc
Q psy4577         141 YKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR--PEGKDYSIHRLILGTHT--SDEQNHLLIASVQLPNEDAQFDAS  216 (384)
Q Consensus       141 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~  216 (384)
                      +++|+............+..  ++.++.|.|++..  ....+..+..+.+.+..  ........+..+.+.++ +.+...
T Consensus       985 i~i~d~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 1061 (1249)
T 3sfz_A          985 IKIIELPNNRVFSSGVGHKK--AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQD-SRLLSW 1061 (1249)
T ss_dssp             CEEEETTTTSCEEECCCCSS--CCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSS-SEEEEE
T ss_pred             EEEEEcCCCceeeecccCCC--ceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCC-CcEEEE
Confidence            99999987766555444443  3455677776541  11122222221111100  01112223555555553 344555


Q ss_pred             cccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC
Q psy4577         217 NYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH  296 (384)
Q Consensus       217 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h  296 (384)
                      ..|.....|..    ..........+|.+.|.+++|+|+++ ++++++.||+|++||+.        .+.  ++..+.+|
T Consensus      1062 ~~dg~v~vwd~----~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~s~d~~v~iwd~~--------~~~--~~~~l~~h 1126 (1249)
T 3sfz_A         1062 SFDGTVKVWNV----ITGRIERDFTCHQGTVLSCAISSDAT-KFSSTSADKTAKIWSFD--------LLS--PLHELKGH 1126 (1249)
T ss_dssp             ESSSEEEEEET----TTTCCCEEEECCSSCCCCEEECSSSS-SCEEECCSSCCCEECSS--------SSS--CSBCCCCC
T ss_pred             ECCCcEEEEEC----CCCceeEEEcccCCcEEEEEECCCCC-EEEEEcCCCcEEEEECC--------Ccc--eeeeeccC
Confidence            55555554432    11222445668999999999999996 89999999999999986        332  45578899


Q ss_pred             CCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeee---------eccCCcEeEEEEecCCCccccc
Q psy4577         297 QKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF---------TGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       297 ~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~---------~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      ...|++++|+|++ .+|++|+.||+|++||+.+++       .+..+         .+|.+.|++++|+|++..+++.
T Consensus      1127 ~~~v~~~~~s~dg-~~lat~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A         1127 NGCVRCSAFSLDG-ILLATGDDNGEIRIWNVSDGQ-------LLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp             SSCEEEEEECSSS-SEEEEEETTSCCCEEESSSSC-------CCCCCCCCC-------CCSCCCEEEECTTSSCEEEE
T ss_pred             CCcEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc-------eEEEeccccccccccccCceEEEEEECCCCCEEEEC
Confidence            9999999999999 799999999999999999887       44443         6799999999999999987654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=8.1e-29  Score=210.71  Aligned_cols=232  Identities=20%  Similarity=0.288  Sum_probs=163.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. +||+|+.|+.|+|||+.+              .+.+..+.+|...|.+++|+|++. +|++++.|++|++|
T Consensus        71 ~~~~~~~~-~l~s~~~d~~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iw  134 (312)
T 4ery_A           71 VAWSSDSN-LLVSASDDKTLKIWDVSS--------------GKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIW  134 (312)
T ss_dssp             EEECTTSS-EEEEEETTSEEEEEETTT--------------CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEE
T ss_pred             EEEcCCCC-EEEEECCCCEEEEEECCC--------------CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEE
Confidence            47999997 899999999999999986              366778889999999999999999 88899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.+++.             +.           .+..|  ..++.+++|+|++..++    |+.+++||.........+.
T Consensus       135 d~~~~~~-------------~~-----------~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  188 (312)
T 4ery_A          135 DVKTGKC-------------LK-----------TLPAH--SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI  188 (312)
T ss_dssp             ETTTCCE-------------EE-----------EECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ECCCCEE-------------EE-----------EecCC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe
Confidence            9977411             11           22233  56788999999998887    8999999997654432221


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .. ...+...+.|                                     ++++..+.....|.....|+.    .....
T Consensus       189 ~~-~~~~~~~~~~-------------------------------------~~~~~~l~~~~~d~~i~iwd~----~~~~~  226 (312)
T 4ery_A          189 DD-DNPPVSFVKF-------------------------------------SPNGKYILAATLDNTLKLWDY----SKGKC  226 (312)
T ss_dssp             CS-SCCCEEEEEE-------------------------------------CTTSSEEEEEETTTEEEEEET----TTTEE
T ss_pred             cc-CCCceEEEEE-------------------------------------CCCCCEEEEEcCCCeEEEEEC----CCCcE
Confidence            11 1111222333                                     333333333333333332211    11122


Q ss_pred             EEEEeecCCceE--EEEEc-CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577         237 IEIKINHEGEVN--RARYM-PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       237 ~~~~~~~~~~v~--~v~~~-p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l  313 (384)
                      .....+|...+.  ...++ +++ .+|++|+.||.|++||++        .+  ..+..+.+|...|.+++|+|++ .+|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~vwd~~--------~~--~~~~~~~~h~~~v~~~~~~p~~-~~l  294 (312)
T 4ery_A          227 LKTYTGHKNEKYCIFANFSVTGG-KWIVSGSEDNLVYIWNLQ--------TK--EIVQKLQGHTDVVISTACHPTE-NII  294 (312)
T ss_dssp             EEEECSSCCSSSCCCEEEECSSS-CEEEECCTTSCEEEEETT--------TC--CEEEEECCCSSCEEEEEECSSS-SEE
T ss_pred             EEEEEecCCceEEEEEEEEeCCC-cEEEEECCCCEEEEEECC--------Cc--hhhhhhhccCCcEEEEeecCcC-Cce
Confidence            344445554432  23444 455 599999999999999986        33  3466889999999999999998 799


Q ss_pred             EEee--CCCcEEEEecC
Q psy4577         314 LSAS--DDHTICLWDIN  328 (384)
Q Consensus       314 ~s~s--~Dg~i~iwd~~  328 (384)
                      ++++  .|++|++|+..
T Consensus       295 ~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          295 ASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEECTTTCCEEEEECC
T ss_pred             EEEEccCCccEEEecCC
Confidence            9987  69999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.5e-28  Score=216.41  Aligned_cols=258  Identities=11%  Similarity=0.185  Sum_probs=179.9

Q ss_pred             CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-ccccceEEEEEccCCCcEEEEEecCCeEEEEEccc
Q psy4577           6 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVC   84 (384)
Q Consensus         6 ~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~   84 (384)
                      ++. .+++++.|+.|+|||+.+.              +....+. .|...|++++|+|++. +|++|+.||.|++||+.+
T Consensus       102 s~~-~l~~~~~d~~v~lw~~~~~--------------~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~  165 (401)
T 4aez_A          102 SNL-NVVAVALERNVYVWNADSG--------------SVSALAETDESTYVASVKWSHDGS-FLSVGLGNGLVDIYDVES  165 (401)
T ss_dssp             CTT-SEEEEEETTEEEEEETTTC--------------CEEEEEECCTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred             cCC-CEEEEECCCeEEEeeCCCC--------------cEeEeeecCCCCCEEEEEECCCCC-EEEEECCCCeEEEEECcC
Confidence            344 4778889999999999862              3333333 4889999999999999 788999999999999977


Q ss_pred             CCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccc-cccceeeccc
Q psy4577          85 VEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTP-FLYDLVMTHA  159 (384)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~-~~~~~~~~~~  159 (384)
                      ++.             +.           .+.+|  ...|.+++|++  ..++    ++.+++||+... .....+..+.
T Consensus       166 ~~~-------------~~-----------~~~~~--~~~v~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  217 (401)
T 4aez_A          166 QTK-------------LR-----------TMAGH--QARVGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHS  217 (401)
T ss_dssp             CCE-------------EE-----------EECCC--SSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred             CeE-------------EE-----------EecCC--CCceEEEEECC--CEEEEEcCCCCEEEEecccCcceeeEEcCCC
Confidence            411             11           22233  56788999954  4444    999999999742 2222222221


Q ss_pred             ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE
Q psy4577         160 LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI  239 (384)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  239 (384)
                      .                                       .+..+.+++++..+.....|.....|+.    ........
T Consensus       218 ~---------------------------------------~v~~~~~~~~~~~l~s~~~d~~v~iwd~----~~~~~~~~  254 (401)
T 4aez_A          218 S---------------------------------------EVCGLAWRSDGLQLASGGNDNVVQIWDA----RSSIPKFT  254 (401)
T ss_dssp             S---------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEET----TCSSEEEE
T ss_pred             C---------------------------------------CeeEEEEcCCCCEEEEEeCCCeEEEccC----CCCCccEE
Confidence            1                                       2333334443333444444444333322    11223455


Q ss_pred             EeecCCceEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE--
Q psy4577         240 KINHEGEVNRARYMPQNPCVIATKT--PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS--  315 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s--  315 (384)
                      ...|...|.+++|+|++..++++++  .|+.|++||++        .+.  ++..+. |...|.+++|+|++ .+|++  
T Consensus       255 ~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~--------~~~--~~~~~~-~~~~v~~~~~s~~~-~~l~~~~  322 (401)
T 4aez_A          255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA--------TGA--RVNTVD-AGSQVTSLIWSPHS-KEIMSTH  322 (401)
T ss_dssp             ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT--------TCC--EEEEEE-CSSCEEEEEECSSS-SEEEEEE
T ss_pred             ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC--------CCC--EEEEEe-CCCcEEEEEECCCC-CeEEEEe
Confidence            6689999999999998877888876  89999999986        332  344454 66789999999998 68888  


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      |+.||.|++||+.+++.     .....+.+|...|++++|+|+++.+++.+.
T Consensus       323 g~~dg~i~v~~~~~~~~-----~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          323 GFPDNNLSIWSYSSSGL-----TKQVDIPAHDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             CTTTCEEEEEEEETTEE-----EEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred             ecCCCcEEEEecCCccc-----eeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence            44899999999998641     144456789999999999999998776643

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=3.4e-29  Score=235.82  Aligned_cols=240  Identities=15%  Similarity=0.133  Sum_probs=178.4

Q ss_pred             eeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeecc
Q psy4577          43 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEW  122 (384)
Q Consensus        43 ~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (384)
                      .+...+.+|.+.|++|+|+|++..+|+|||.|++|++|++.....                   ........+.+|  ..
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~-------------------~~~~~~~~~~~h--~~  431 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK-------------------AYGVAQRRLTGH--SH  431 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT-------------------CSCEEEEEEECC--SS
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc-------------------ccccccceecCC--CC
Confidence            445678899999999999998766899999999999999976311                   011111244556  67


Q ss_pred             CeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577         123 PSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH  198 (384)
Q Consensus       123 ~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (384)
                      .|.+++|+|+++.++    |++|++||+........+..|..                                      
T Consensus       432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~--------------------------------------  473 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK--------------------------------------  473 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--------------------------------------
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCC--------------------------------------
Confidence            899999999999887    89999999977654433333322                                      


Q ss_pred             EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEE---EeecCCceEEEEEcCCCC-cEEEEEeCCCcEEEEec
Q psy4577         199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI---KINHEGEVNRARYMPQNP-CVIATKTPSSDVLVFDY  274 (384)
Q Consensus       199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~p~~~-~~l~s~s~dg~i~iwd~  274 (384)
                       .|.++.+++++..+.....|...+.|...    +......   ..+|...|.+++|+|++. .++++|+.|++|++||+
T Consensus       474 -~v~~~~~s~~~~~l~s~s~D~~i~iwd~~----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~  548 (694)
T 3dm0_A          474 -DVLSVAFSLDNRQIVSASRDRTIKLWNTL----GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL  548 (694)
T ss_dssp             -CEEEEEECTTSSCEEEEETTSCEEEECTT----SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred             -CEEEEEEeCCCCEEEEEeCCCEEEEEECC----CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC
Confidence             24445555555555555566655555321    1111111   136888999999999862 48999999999999998


Q ss_pred             CCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEE
Q psy4577         275 TKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELEL  354 (384)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~  354 (384)
                      +        ..  .....+.+|.+.|++++|+|++ .+|+||+.||+|++||+++++       .+..+.. ...|.+++
T Consensus       549 ~--------~~--~~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~-------~~~~~~~-~~~v~~~~  609 (694)
T 3dm0_A          549 S--------NC--KLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGK-------KLYSLEA-NSVIHALC  609 (694)
T ss_dssp             T--------TC--CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTE-------EEECCBC-SSCEEEEE
T ss_pred             C--------CC--cEEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc-------eEEEecC-CCcEEEEE
Confidence            6        22  2456789999999999999998 799999999999999999987       7777664 46799999


Q ss_pred             EecCCCccccc
Q psy4577         355 IERLTKKADPV  365 (384)
Q Consensus       355 ~sp~~~~~~~~  365 (384)
                      |+|++..+.+.
T Consensus       610 ~sp~~~~l~~~  620 (694)
T 3dm0_A          610 FSPNRYWLCAA  620 (694)
T ss_dssp             ECSSSSEEEEE
T ss_pred             EcCCCcEEEEE
Confidence            99998866544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=3.2e-28  Score=217.40  Aligned_cols=277  Identities=19%  Similarity=0.228  Sum_probs=185.5

Q ss_pred             CCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEc
Q psy4577           3 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSV   82 (384)
Q Consensus         3 fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~   82 (384)
                      +++++. +||+|+.||+|++||+.+              .+.+..+.+|.+.|.+++|+  +. ++++|+.||+|++||+
T Consensus       125 ~~~~g~-~l~sg~~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~  186 (445)
T 2ovr_B          125 LQFCGN-RIVSGSDDNTLKVWSAVT--------------GKCLRTLVGHTGGVWSSQMR--DN-IIISGSTDRTLKVWNA  186 (445)
T ss_dssp             EEEETT-EEEEEETTSCEEEEETTT--------------CCEEEECCCCSSCEEEEEEE--TT-EEEEEETTSCEEEEET
T ss_pred             EEEcCC-EEEEEECCCcEEEEECCC--------------CcEEEEEcCCCCCEEEEEec--CC-EEEEEeCCCeEEEEEC
Confidence            456675 799999999999999986              46778889999999999998  34 7899999999999999


Q ss_pred             ccCCCccch----------------hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceee
Q psy4577          83 VCVEPFDDA----------------VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYK  142 (384)
Q Consensus        83 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~  142 (384)
                      .+++.....                ......++.+++|+.........+.+|  ...+.+++|  ++..++    |+.++
T Consensus       187 ~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~dg~i~  262 (445)
T 2ovr_B          187 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH--VAAVRCVQY--DGRRVVSGAYDFMVK  262 (445)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECC--SSCEEEEEE--CSSCEEEEETTSCEE
T ss_pred             CcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCC--cccEEEEEE--CCCEEEEEcCCCEEE
Confidence            876321100                011123455666665554443444444  455666666  344444    66677


Q ss_pred             eeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcC
Q psy4577         143 IWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDK  222 (384)
Q Consensus       143 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~  222 (384)
                      +||.........+..+..                                       .+..+.+  ++..+.....|...
T Consensus       263 iwd~~~~~~~~~~~~~~~---------------------------------------~v~~~~~--~~~~l~~~~~d~~i  301 (445)
T 2ovr_B          263 VWDPETETCLHTLQGHTN---------------------------------------RVYSLQF--DGIHVVSGSLDTSI  301 (445)
T ss_dssp             EEEGGGTEEEEEECCCSS---------------------------------------CEEEEEE--CSSEEEEEETTSCE
T ss_pred             EEECCCCcEeEEecCCCC---------------------------------------ceEEEEE--CCCEEEEEeCCCeE
Confidence            776655433322222211                                       1222222  22222333333333


Q ss_pred             CCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC---CCCc
Q psy4577         223 GDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG---HQKE  299 (384)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---h~~~  299 (384)
                      ..|+.    ..........+|...+.++.++  + .++++|+.||.|++||++        .+.  ++..+.+   |...
T Consensus       302 ~i~d~----~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~vwd~~--------~~~--~~~~~~~~~~~~~~  364 (445)
T 2ovr_B          302 RVWDV----ETGNCIHTLTGHQSLTSGMELK--D-NILVSGNADSTVKIWDIK--------TGQ--CLQTLQGPNKHQSA  364 (445)
T ss_dssp             EEEET----TTCCEEEEECCCCSCEEEEEEE--T-TEEEEEETTSCEEEEETT--------TCC--EEEEECSTTSCSSC
T ss_pred             EEEEC----CCCCEEEEEcCCcccEEEEEEe--C-CEEEEEeCCCeEEEEECC--------CCc--EEEEEccCCCCCCC
Confidence            33211    1122245566888899988875  4 489999999999999986        333  3455655   8889


Q ss_pred             eEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeee-----eccCCcEeEEEEecCCCccccccccc
Q psy4577         300 GYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF-----TGHTAVVELELIERLTKKADPVCTLE  369 (384)
Q Consensus       300 i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~sp~~~~~~~~c~~~  369 (384)
                      |++++|+  + .+|++|+.||.|++||+++++       .+..+     .+|.+.|++++|+|++..+++.+...
T Consensus       365 v~~~~~~--~-~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg  429 (445)
T 2ovr_B          365 VTCLQFN--K-NFVITSSDDGTVKLWDLKTGE-------FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG  429 (445)
T ss_dssp             EEEEEEC--S-SEEEEEETTSEEEEEETTTCC-------EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred             EEEEEEC--C-CEEEEEeCCCeEEEEECCCCc-------eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC
Confidence            9999996  4 699999999999999999988       77777     46889999999999988777665443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=1.7e-28  Score=217.39  Aligned_cols=249  Identities=16%  Similarity=0.232  Sum_probs=165.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|+|. +||+|+.||+|+|||+.+              .+.+..+.+|...|.+++|++  . +|++|+.|+.+++|
T Consensus       153 v~fspdg~-~lasgs~Dg~v~iWd~~~--------------~~~~~~~~~h~~~v~~~s~~~--~-~l~sgs~d~~i~~~  214 (420)
T 4gga_A          153 VAWIKEGN-YLAVGTSSAEVQLWDVQQ--------------QKRLRNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHH  214 (420)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEE
T ss_pred             EEECCCCC-EEEEEECCCeEEEEEcCC--------------CcEEEEEeCCCCceEEEeeCC--C-EEEEEeCCCceeEe
Confidence            57999997 899999999999999987              477888999999999998864  4 88999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccce--
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDL--  154 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~--  154 (384)
                      |......                       ....+.+|  ...+..+.|+|++..++    |+.+++|+.........  
T Consensus       215 d~~~~~~-----------------------~~~~~~~h--~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~  269 (420)
T 4gga_A          215 DVRVAEH-----------------------HVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL  269 (420)
T ss_dssp             ETTSSSC-----------------------EEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS
T ss_pred             eecccce-----------------------eeEEeccc--ccceeeeeecCCCCeeeeeeccccceEEeeccccccceee
Confidence            9866311                       11133344  56788999999999887    89999999865432111  


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccc---cccCcCCCCCCccCC
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDAS---NYDTDKGDFGGFGSV  231 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~  231 (384)
                      .........+..+.|.|..                                     ..+++.   ..|...+.|..    
T Consensus       270 ~~~~~~~~~V~~~~~~p~~-------------------------------------~~~la~~~gs~D~~I~iwd~----  308 (420)
T 4gga_A          270 QTFTQHQGAVKAVAWCPWQ-------------------------------------SNVLATGGGTSDRHIRIWNV----  308 (420)
T ss_dssp             EEECCCSSCEEEEEECTTC-------------------------------------TTEEEEEECTTTCEEEEEET----
T ss_pred             eeecccCCceeeeeeCCCc-------------------------------------ccEEEEEeecCCCEEEEEeC----
Confidence            0111111112233333322                                     211111   12222222211    


Q ss_pred             CCceeEEEEeecCCceEEEEEcCCCCcEEEEE--eCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC
Q psy4577         232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATK--TPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL  309 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~  309 (384)
                      .... ......+...+.++.|+|++. .++++  +.|+.|+|||++        ++  .++..+.+|.+.|++++|+|+|
T Consensus       309 ~t~~-~~~~~~~~~~v~~~~~~~~~~-~lv~~sg~~d~~I~iwd~~--------~~--~~v~~l~gH~~~V~~l~~spdg  376 (420)
T 4gga_A          309 CSGA-CLSAVDAHSQVCSILWSPHYK-ELISGHGFAQNQLVIWKYP--------TM--AKVAELKGHTSRVLSLTMSPDG  376 (420)
T ss_dssp             TTTE-EEEEEECSSCEEEEEEETTTT-EEEEEECTTTCCEEEEETT--------TC--CEEEEECCCSSCEEEEEECTTS
T ss_pred             Cccc-cceeeccccceeeeeecCCCC-eEEEEEecCCCEEEEEECC--------CC--cEEEEEcCCCCCEEEEEEcCCC
Confidence            1111 223334567899999999996 55544  379999999986        33  3577899999999999999999


Q ss_pred             CCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEE
Q psy4577         310 NGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELE  353 (384)
Q Consensus       310 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~  353 (384)
                       .+|+|||.|++|+|||+....       +......+...+...
T Consensus       377 -~~l~S~s~D~tvriWdv~~~~-------~~~~~~~~~~~~~~~  412 (420)
T 4gga_A          377 -ATVASAAADETLRLWRCFELD-------PARRREREKASAAKS  412 (420)
T ss_dssp             -SCEEEEETTTEEEEECCSCSS-------CC-------------
T ss_pred             -CEEEEEecCCeEEEEECCCCC-------ccchhhhccCCcccc
Confidence             799999999999999998765       555554454444333

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=6.9e-29  Score=215.12  Aligned_cols=256  Identities=14%  Similarity=0.155  Sum_probs=169.2

Q ss_pred             CCCCCCC--CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEE------ccCCCcEEEEEe
Q psy4577           1 VQWSPHN--ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW------NPNEPWVICSVS   72 (384)
Q Consensus         1 v~fsp~~--~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~------~~~~~~~l~s~s   72 (384)
                      ++|+|++  ..+||+|+.|+.|++||+....             ..+..+.+|.+.|.+++|      +|++. +|++++
T Consensus        71 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~  136 (357)
T 3i2n_A           71 GTFGATSLQQRYLATGDFGGNLHIWNLEAPE-------------MPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGS  136 (357)
T ss_dssp             EECTTCCTTTCCEEEEETTSCEEEECTTSCS-------------SCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEE
T ss_pred             EEEcCCCCCCceEEEecCCCeEEEEeCCCCC-------------ccEEEEEecccceEEEeeccccccCCCcc-EEEEEe
Confidence            4789983  2489999999999999998621             256677899999999955      67888 788999


Q ss_pred             cCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEE----EecCceeee----cceeeee
Q psy4577          73 EDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ----WLPDVTRVI----NEEYKIW  144 (384)
Q Consensus        73 ~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~----d~~v~~w  144 (384)
                      .|++|++||+..++.            .+..+.....        + ....+.+++    |+|++..++    ++.+++|
T Consensus       137 ~d~~i~vwd~~~~~~------------~~~~~~~~~~--------~-~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~  195 (357)
T 3i2n_A          137 RDGTVKVWDPRQKDD------------PVANMEPVQG--------E-NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF  195 (357)
T ss_dssp             TTSCEEEECTTSCSS------------CSEEECCCTT--------S-CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred             CCCeEEEEeCCCCCC------------cceeccccCC--------C-CCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence            999999999987521            0111111110        0 023567777    778898887    7999999


Q ss_pred             ccccccccceeecccccccceeeeecc---CCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCc
Q psy4577         145 KKNTPFLYDLVMTHALEWPSLTAQWLP---DVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTD  221 (384)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~  221 (384)
                      |+........   .....++.++.|.|   +..          .+..+..    ...+.++.+.-               
T Consensus       196 d~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~----------~l~~~~~----dg~i~i~d~~~---------------  243 (357)
T 3i2n_A          196 DLRNMALRWE---TNIKNGVCSLEFDRKDISMN----------KLVATSL----EGKFHVFDMRT---------------  243 (357)
T ss_dssp             ETTTTEEEEE---EECSSCEEEEEESCSSSSCC----------EEEEEES----TTEEEEEEEEE---------------
T ss_pred             ECccCceeee---cCCCCceEEEEcCCCCCCCC----------EEEEECC----CCeEEEEeCcC---------------
Confidence            9987654222   11222344555554   221          1222211    22333333320               


Q ss_pred             CCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCC---------CCCCccceee
Q psy4577         222 KGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPD---------PNGECHPDLR  292 (384)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~  292 (384)
                             ......+......+|...|++++|+|+++.+|++++.||.|++||++.......         ..+....+..
T Consensus       244 -------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~  316 (357)
T 3i2n_A          244 -------QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN  316 (357)
T ss_dssp             -------EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred             -------CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence                   000112223344589999999999999855899999999999999974321100         0012245678


Q ss_pred             ecCCCCceEEEEeCCCCCCeEE-EeeCCCcEEEEecCCCC
Q psy4577         293 LRGHQKEGYGLSWNPSLNGYLL-SASDDHTICLWDINATP  331 (384)
Q Consensus       293 ~~~h~~~i~~~~~s~~~~~~l~-s~s~Dg~i~iwd~~~~~  331 (384)
                      +.+|..+|++++|+|++ .+|+ |++.||.|++||+.+.+
T Consensus       317 ~~~~~~~v~~~~~s~~~-~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          317 VTLSTQPISSLDWSPDK-RGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EECCSSCEEEEEECSSS-TTEEEEEETTSEEEEEEECC--
T ss_pred             cccCCCCeeEEEEcCCC-CeEEEEecCCCcEEEEECCCcc
Confidence            89999999999999999 6777 89999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=1.1e-27  Score=215.15  Aligned_cols=275  Identities=15%  Similarity=0.178  Sum_probs=187.0

Q ss_pred             CCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcc
Q psy4577           4 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVV   83 (384)
Q Consensus         4 sp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~   83 (384)
                      .+++. +||+|+.||+|++||+.+              .+.+..+.+|.+.|++++|+|++  +|++|+.||+|++||+.
T Consensus       129 ~~~~~-~l~sgs~dg~i~vwd~~~--------------~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          129 QFEDN-YVITGADDKMIRVYDSIN--------------KKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             EEETT-EEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETT
T ss_pred             EECCC-EEEEEcCCCcEEEEECCC--------------CcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECC
Confidence            34554 899999999999999986              47788889999999999999987  67899999999999998


Q ss_pred             cCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec--Cceeee----cceeeeeccccccccceeec
Q psy4577          84 CVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP--DVTRVI----NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~----d~~v~~w~~~~~~~~~~~~~  157 (384)
                      +++             .+.           .+.+|  ...|.+++|++  ++..++    |+++++|++...........
T Consensus       192 ~~~-------------~~~-----------~~~~h--~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~  245 (464)
T 3v7d_B          192 KGC-------------CTH-----------VFEGH--NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE  245 (464)
T ss_dssp             TTE-------------EEE-----------EECCC--SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-----
T ss_pred             CCc-------------EEE-----------EECCC--CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccc
Confidence            751             111           22334  66788999984  666666    99999999976543221111


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI  237 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  237 (384)
                      . ...+  .....+...     .+.  ......      ....+..+  ++++..+.....|.....|+.    ......
T Consensus       246 ~-~~~~--~~~~~~~~~-----~~~--~~~~~~------~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~----~~~~~~  303 (464)
T 3v7d_B          246 E-HDYP--LVFHTPEEN-----PYF--VGVLRG------HMASVRTV--SGHGNIVVSGSYDNTLIVWDV----AQMKCL  303 (464)
T ss_dssp             --CCSS--EEESCGGGC-----TTE--EEEECC------CSSCEEEE--EEETTEEEEEETTSCEEEEET----TTTEEE
T ss_pred             c-CCcc--eEeeccCCC-----eEE--EEEccC------ccceEEEE--cCCCCEEEEEeCCCeEEEEEC----CCCcEE
Confidence            0 0000  000000000     000  000000      00111222  223334444444554444422    222335


Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      ....+|...|.+++|+|++. ++++|+.||.|++||++        .+  .++..+.+|...|.+++|+  + .+|++|+
T Consensus       304 ~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~--------~~--~~~~~~~~h~~~v~~~~~~--~-~~l~s~s  369 (464)
T 3v7d_B          304 YILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLE--------NG--ELMYTLQGHTALVGLLRLS--D-KFLVSAA  369 (464)
T ss_dssp             EEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETT--------TT--EEEEEECCCSSCEEEEEEC--S-SEEEEEE
T ss_pred             EEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECC--------CC--cEEEEEeCCCCcEEEEEEc--C-CEEEEEe
Confidence            56678999999999999995 99999999999999986        33  3567889999999999997  3 5999999


Q ss_pred             CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         318 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      .||+|++||+++..       ....+ .|...+..++|+|++..+++.
T Consensus       370 ~dg~v~vwd~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~l~~~  409 (464)
T 3v7d_B          370 ADGSIRGWDANDYS-------RKFSY-HHTNLSAITTFYVSDNILVSG  409 (464)
T ss_dssp             TTSEEEEEETTTCC-------EEEEE-ECTTCCCEEEEEECSSEEEEE
T ss_pred             CCCcEEEEECCCCc-------eeeee-cCCCCccEEEEEeCCCEEEEe
Confidence            99999999999876       44444 367788889999999876654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=1.3e-27  Score=206.69  Aligned_cols=284  Identities=11%  Similarity=0.086  Sum_probs=176.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|++. +||+|+.|+ ++|||+..              .+.....  +...+..++|.+++..++++++.|++|++|
T Consensus        25 v~fs~dg~-~la~g~~~~-~~iw~~~~--------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A           25 YEFNQDQS-CLILSTLKS-FEIYNVHP--------------VAHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             EEECTTSS-EEEEECSSE-EEEEEETT--------------EEEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred             EEECCCCC-EEEEEcCCE-EEEEecCC--------------cceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence            57999997 799988765 78999875              2333322  223588899999988565778889999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-cceeeeeccccc-cccceeecc
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-NEEYKIWKKNTP-FLYDLVMTH  158 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-d~~v~~w~~~~~-~~~~~~~~~  158 (384)
                      |+.+++.             +..+              ....+|.+++|+++...++ ++.+++|++... .....+.. 
T Consensus        87 d~~~~~~-------------~~~~--------------~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-  138 (355)
T 3vu4_A           87 DDVKKQD-------------VSRI--------------KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR-  138 (355)
T ss_dssp             ETTTTEE-------------EEEE--------------ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE-
T ss_pred             ECCCCcE-------------EEEE--------------ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc-
Confidence            9977511             1111              1245788999999876555 999999999775 33222222 


Q ss_pred             cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee-E
Q psy4577         159 ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE-I  237 (384)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~  237 (384)
                          +...+.+.+            ..+.+.+  +.....+.++.+.-.   ....  ..+....       .....+ .
T Consensus       139 ----~~~~~~~s~------------~~la~~s--g~~~g~v~iwd~~~~---~~~~--~~~~~~~-------~~~~~p~~  188 (355)
T 3vu4_A          139 ----FGGVCEFSN------------GLLVYSN--EFNLGQIHITKLQSS---GSAT--TQDQGVQ-------QKAILGKG  188 (355)
T ss_dssp             ----EEEEEEEET------------TEEEEEE--SSCTTCEEEEECCC------------------------------CC
T ss_pred             ----CCceEEEEc------------cEEEEeC--CCcCcEEEEEECCCC---Cccc--ccccccc-------ccccCccc
Confidence                111111111            0111110  011223333333200   0000  0000000       000011 4


Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCCc-EEEEecCCCCCCCCCCCCccceeeec-C-CCCceEEEEeCCCCCCeEE
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSSD-VLVFDYTKHPSKPDPNGECHPDLRLR-G-HQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~-~-h~~~i~~~~~s~~~~~~l~  314 (384)
                      ..+.+|.+.|++++|+|++. +||+|+.|++ |++||++        ++.  .+..+. + |...|++++|+|++ .+|+
T Consensus       189 ~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~--------~~~--~~~~~~~g~h~~~v~~~~~s~~~-~~l~  256 (355)
T 3vu4_A          189 VLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTE--------DGV--LVREFRRGLDRADVVDMKWSTDG-SKLA  256 (355)
T ss_dssp             EEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEETT--------TCC--EEEEEECTTCCSCEEEEEECTTS-CEEE
T ss_pred             EEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEECC--------CCc--EEEEEEcCCCCCcEEEEEECCCC-CEEE
Confidence            55678999999999999995 9999999998 9999986        333  455676 5 99999999999998 7999


Q ss_pred             EeeCCCcEEEEecCCCCCCCcc-ccc------------eee--e-eccCCcEeEEEEecCCCcccccccccccc
Q psy4577         315 SASDDHTICLWDINATPKENRV-IDA------------KTI--F-TGHTAVVELELIERLTKKADPVCTLEKAK  372 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~~~~~~~~-~~~------------~~~--~-~~h~~~v~~~~~sp~~~~~~~~c~~~~~~  372 (384)
                      +++.|++|++||++........ +..            +..  + ..+......++|+|+++.++..|.....+
T Consensus       257 s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~  330 (355)
T 3vu4_A          257 VVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIE  330 (355)
T ss_dssp             EEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEE
T ss_pred             EEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEE
Confidence            9999999999999875421110 000            000  1 11223347799999999888887654433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=3.5e-29  Score=213.09  Aligned_cols=194  Identities=17%  Similarity=0.242  Sum_probs=144.0

Q ss_pred             EEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCee
Q psy4577          46 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSL  125 (384)
Q Consensus        46 ~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  125 (384)
                      ..+.+|.+.|++++|+|+|+ +||+|+.|++|++||+.+++                      ..+...+.+|  ..+|.
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~----------------------~~~~~~l~gH--~~~V~   61 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGG----------------------QILIADLRGH--EGPVW   61 (316)
T ss_dssp             -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTE----------------------EEEEEEEECC--SSCEE
T ss_pred             eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCC----------------------cEEEEEEcCC--CccEE
Confidence            34579999999999999999 88999999999999997631                      0011234456  67899


Q ss_pred             EEEEecC--ceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeE
Q psy4577         126 TAQWLPD--VTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHL  199 (384)
Q Consensus       126 ~~~~~~~--~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (384)
                      +++|+|+  +..++    |++|++||.......                                               
T Consensus        62 ~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~-----------------------------------------------   94 (316)
T 3bg1_A           62 QVAWAHPMYGNILASCSYDRKVIIWREENGTWE-----------------------------------------------   94 (316)
T ss_dssp             EEEECCGGGSSCEEEEETTSCEEEECCSSSCCC-----------------------------------------------
T ss_pred             EEEeCCCCCCCEEEEEECCCEEEEEECCCCcce-----------------------------------------------
Confidence            9999864  66666    899999987532110                                               


Q ss_pred             EEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCC--CCcEEEEEeCCCcEEEEecCCC
Q psy4577         200 LIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQ--NPCVIATKTPSSDVLVFDYTKH  277 (384)
Q Consensus       200 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~s~s~dg~i~iwd~~~~  277 (384)
                                                          ......+|...|++++|+|+  + .+|++|+.|+.|++||++..
T Consensus        95 ------------------------------------~~~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           95 ------------------------------------KSHEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             ------------------------------------EEEEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSS
T ss_pred             ------------------------------------EEEEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCC
Confidence                                                01223468889999999998  5 58999999999999999621


Q ss_pred             CCCCCCCCCccceeeecCCCCceEEEEeCCCC----------------CCeEEEeeCCCcEEEEecCCCCCCCcccccee
Q psy4577         278 PSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL----------------NGYLLSASDDHTICLWDINATPKENRVIDAKT  341 (384)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~----------------~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  341 (384)
                             ........+.+|...|.+++|+|++                ..+|++|+.|++|++||++...    ...++.
T Consensus       138 -------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----~~~~~~  206 (316)
T 3bg1_A          138 -------GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG----QWKEEQ  206 (316)
T ss_dssp             -------SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS----CEEEEE
T ss_pred             -------CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC----ccceee
Confidence                   1222234667899999999999972                1589999999999999997542    111667


Q ss_pred             eeeccCCcEeEEEEecCC
Q psy4577         342 IFTGHTAVVELELIERLT  359 (384)
Q Consensus       342 ~~~~h~~~v~~~~~sp~~  359 (384)
                      ++.+|...|++++|+|++
T Consensus       207 ~l~~h~~~V~~v~~sp~~  224 (316)
T 3bg1_A          207 KLEAHSDWVRDVAWAPSI  224 (316)
T ss_dssp             CCBCCSSCEEEEECCCCS
T ss_pred             ecccCCCceEEEEecCCC
Confidence            788999999999999997

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-28  Score=236.01  Aligned_cols=220  Identities=8%  Similarity=0.116  Sum_probs=162.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|++. +||+|+.||+|+||+...              .+....+ .|...|.+|+|+| ++ +|++++.|++|++|
T Consensus        23 lafspdg~-~lAsgs~Dg~I~lw~~~~--------------~~~~~~~-~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lW   84 (902)
T 2oaj_A           23 AAFDFTQN-LLAIATVTGEVHIYGQQQ--------------VEVVIKL-EDRSAIKEMRFVK-GI-YLVVINAKDTVYVL   84 (902)
T ss_dssp             EEEETTTT-EEEEEETTSEEEEECSTT--------------CEEEEEC-SSCCCEEEEEEET-TT-EEEEEETTCEEEEE
T ss_pred             EEECCCCC-EEEEEeCCCEEEEEeCCC--------------cEEEEEc-CCCCCEEEEEEcC-CC-EEEEEECcCeEEEE
Confidence            57999997 899999999999999875              2444433 4788999999999 77 78999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.+++.             +..           +   .....|.+++|+|++..++    |++|++||+.+..+... .
T Consensus        85 d~~~~~~-------------~~~-----------~---~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~-~  136 (902)
T 2oaj_A           85 SLYSQKV-------------LTT-----------V---FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF-K  136 (902)
T ss_dssp             ETTTCSE-------------EEE-----------E---ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE-E
T ss_pred             ECCCCcE-------------EEE-----------E---cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc-e
Confidence            9987521             111           1   1245789999999999887    99999999865433100 0


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      ..                                            .+             +..                
T Consensus       137 i~--------------------------------------------~~-------------~~~----------------  143 (902)
T 2oaj_A          137 LD--------------------------------------------NL-------------QKS----------------  143 (902)
T ss_dssp             EC--------------------------------------------CH-------------HHH----------------
T ss_pred             ec--------------------------------------------cc-------------ccc----------------
Confidence            00                                            00             000                


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC------------------CCC
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG------------------HQK  298 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------------------h~~  298 (384)
                      .....+|.+.|++++|+|++..++++|+.||.| +||++        .+.  ++..+.+                  |..
T Consensus       144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~--------~~~--~~~~~~~~~~~g~~~~~~~~~~~~~h~~  212 (902)
T 2oaj_A          144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV--------ENE--IKQSFIYELPPFAPGGDFSEKTNEKRTP  212 (902)
T ss_dssp             HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT--------TTE--EEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred             ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC--------CCc--eEEEEecccCCcCCCcccccccccccCC
Confidence            000126888999999999755689999999999 99996        322  2334443                  357


Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceee--e---ec-------------cCCcEeEEEEecC
Q psy4577         299 EGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTI--F---TG-------------HTAVVELELIERL  358 (384)
Q Consensus       299 ~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~--~---~~-------------h~~~v~~~~~sp~  358 (384)
                      .|++++|+|+| .+|+||+.||+|++||+++++       ++..  +   .+             |..+|++++|+|.
T Consensus       213 ~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~-------~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~  282 (902)
T 2oaj_A          213 KVIQSLYHPNS-LHIITIHEDNSLVFWDANSGH-------MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCE  282 (902)
T ss_dssp             CEEEEEECTTS-SEEEEEETTCCEEEEETTTCC-------EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEEC
T ss_pred             CeEEEEEcCCC-CEEEEEECCCeEEEEECCCCc-------EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEec
Confidence            89999999998 799999999999999999876       5432  2   12             3558999999754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.96  E-value=7.6e-28  Score=223.81  Aligned_cols=229  Identities=12%  Similarity=0.142  Sum_probs=176.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccc-eEEEEEcc--CCCcEEEEEecCCeE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK-ISDFSWNP--NEPWVICSVSEDNIM   77 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-V~~l~~~~--~~~~~l~s~s~D~~i   77 (384)
                      ++|+|+++ +||+++ |+.|+|||+.+..          .+.+....+.+|.+. |++++|+|  +++ +|++++.||+|
T Consensus        24 ~~~spdg~-~l~~~~-~~~v~v~~~~~~~----------~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v   90 (615)
T 1pgu_A           24 LSYDPTTN-AIAYPC-GKSAFVRCLDDGD----------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKV   90 (615)
T ss_dssp             CEEETTTT-EEEEEE-TTEEEEEECCSSC----------CSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEE
T ss_pred             EEECCCCC-EEEEec-CCeEEEEECCCCC----------CccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEE
Confidence            57999997 788887 8899999998621          111567778999999 99999999  999 88999999999


Q ss_pred             EEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c----ceeeeeccccc
Q psy4577          78 QILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N----EEYKIWKKNTP  149 (384)
Q Consensus        78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d----~~v~~w~~~~~  149 (384)
                      ++||+.+++....      .          ...+...+..|  ..+|.+++|+|+++.++    +    +.+++|+... 
T Consensus        91 ~vw~~~~~~~~~~------~----------~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~-  151 (615)
T 1pgu_A           91 IVWGWTFDKESNS------V----------EVNVKSEFQVL--AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN-  151 (615)
T ss_dssp             EEEEEEEEGGGTE------E----------EEEEEEEEECC--SSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC-
T ss_pred             EEEeCCCCccccc------c----------cccccchhhcc--cccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC-
Confidence            9999965310000      0          00011122233  56799999999998876    2    3455544110 


Q ss_pred             cccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCcc
Q psy4577         150 FLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFG  229 (384)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~  229 (384)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (615)
T 1pgu_A          152 --------------------------------------------------------------------------------  151 (615)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC---ceEEEEeC
Q psy4577         230 SVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK---EGYGLSWN  306 (384)
Q Consensus       230 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~i~~~~~s  306 (384)
                            .......|...|.+++|+|+++.++++++.|+.|++||++        .  .+.+..+.+|..   .|.+++|+
T Consensus       152 ------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~--------~--~~~~~~~~~~~~~~~~v~~~~~~  215 (615)
T 1pgu_A          152 ------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP--------P--FKFSASDRTHHKQGSFVRDVEFS  215 (615)
T ss_dssp             ------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT--------T--BEEEEEECSSSCTTCCEEEEEEC
T ss_pred             ------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC--------C--cceeeeecccCCCCceEEEEEEC
Confidence                  0223346888999999999996689999999999999975        2  235668889999   99999999


Q ss_pred             CC-CCCeEEEeeCCCcEEEEecCCCCCCCccccceeee-e---ccCCcEeEEEEecCCCcccccc
Q psy4577         307 PS-LNGYLLSASDDHTICLWDINATPKENRVIDAKTIF-T---GHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       307 ~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~---~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      |+ + .+|++++.||.|++||+++++       .+..+ .   +|...|++++|+ ++..+++.+
T Consensus       216 ~~~~-~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~  271 (615)
T 1pgu_A          216 PDSG-EFVITVGSDRKISCFDGKSGE-------FLKYIEDDQEPVQGGIFALSWL-DSQKFATVG  271 (615)
T ss_dssp             STTC-CEEEEEETTCCEEEEETTTCC-------EEEECCBTTBCCCSCEEEEEES-SSSEEEEEE
T ss_pred             CCCC-CEEEEEeCCCeEEEEECCCCC-------EeEEecccccccCCceEEEEEc-CCCEEEEEc
Confidence            99 8 799999999999999999988       88888 6   899999999999 887766654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-28  Score=212.11  Aligned_cols=223  Identities=11%  Similarity=0.024  Sum_probs=160.5

Q ss_pred             CCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEc
Q psy4577           3 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSV   82 (384)
Q Consensus         3 fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~   82 (384)
                      +.+++. +||+|+.||+|++||+.+.              +.+..+.  ...|.++.|+|+    +++++.|++|++|+.
T Consensus        44 ~~~d~~-~l~sg~~Dg~v~iwd~~~~--------------~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~  102 (343)
T 3lrv_A           44 MYYDKW-VCMCRCEDGALHFTQLKDS--------------KTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYP  102 (343)
T ss_dssp             SSEEEE-EEEEEEETTEEEEEEESSS--------------SCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEET
T ss_pred             hcCCCC-EEEEECCCCcEEEEECCCC--------------cEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEc
Confidence            344554 7999999999999999862              3333333  457889999998    679999999999998


Q ss_pred             ccCCCccchhheeeeeeeEEEeccCCccccc-ceeeeeeccCeeEEEEec--Cceeee----cceeeeecccccccccee
Q psy4577          83 VCVEPFDDAVEERVINEEYKIWKKNTPFLYD-LVMTHALEWPSLTAQWLP--DVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~--~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      ...               +.+|+.....+.. ...+|  ..+|.+++|+|  ++..++    |+++++||+........ 
T Consensus       103 ~~~---------------~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-  164 (343)
T 3lrv_A          103 GNQ---------------ITILDSKTNKVLREIEVDS--ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV-  164 (343)
T ss_dssp             TTE---------------EEEEETTTCCEEEEEECCC--SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEE-
T ss_pred             cCc---------------eEEeecCCcceeEEeecCC--CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEE-
Confidence            652               3445544433211 11123  46799999999  898887    89999998864332100 


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (343)
T 3lrv_A          165 --------------------------------------------------------------------------------  164 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCCCCCeEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~~l~  314 (384)
                         ....|...|++++|+|++. +|++|+.||.|++||++        .+.. ....+.+ |..+|++++|+|++ .+|+
T Consensus       165 ---~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~--------~~~~-~~~~~~~~h~~~v~~l~fs~~g-~~l~  230 (343)
T 3lrv_A          165 ---HSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLS--------SPDQ-ASSRFPVDEEAKIKEVKFADNG-YWMV  230 (343)
T ss_dssp             ---ECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESS--------CTTS-CCEECCCCTTSCEEEEEECTTS-SEEE
T ss_pred             ---EecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECC--------CCCC-CccEEeccCCCCEEEEEEeCCC-CEEE
Confidence               0012445689999999995 99999999999999997        3332 2146677 99999999999998 7999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccccceeeee---ccCCcEe--EEEEecCCCcccccc
Q psy4577         315 SASDDHTICLWDINATPKENRVIDAKTIFT---GHTAVVE--LELIERLTKKADPVC  366 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~---~h~~~v~--~~~~sp~~~~~~~~c  366 (384)
                      +++ |++|++||+++.+       .+..+.   .|...+.  +++|+|+++.+++..
T Consensus       231 s~~-~~~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s  279 (343)
T 3lrv_A          231 VEC-DQTVVCFDLRKDV-------GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS  279 (343)
T ss_dssp             EEE-SSBEEEEETTSST-------TCBSSCCCBC-----CCEEEEECTTSSEEEEEE
T ss_pred             EEe-CCeEEEEEcCCCC-------cceeecccccccccccceEEEECCCCCEEEEec
Confidence            999 5599999999886       444433   3445554  699999999877743

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.1e-28  Score=215.67  Aligned_cols=213  Identities=13%  Similarity=0.131  Sum_probs=147.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. +||+|+.|++|+|||+.+..           .......+.+|...|++++|+|++. +|++++.|++|++|
T Consensus        61 ~~~s~~~~-~l~s~s~d~~v~vwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iw  127 (377)
T 3dwl_C           61 VDWAPKSN-RIVTCSQDRNAYVYEKRPDG-----------TWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVC  127 (377)
T ss_dssp             EEECTTTC-CEEEEETTSSEEEC-----------------CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEEC
T ss_pred             EEEeCCCC-EEEEEeCCCeEEEEEcCCCC-----------ceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEE
Confidence            47999997 79999999999999998621           1234566788999999999999999 77899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceee-eeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMT-HALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |+..++..                .     +...+.+ |  ...|.+++|+|+++.++    |+.+++||+.........
T Consensus       128 d~~~~~~~----------------~-----~~~~~~~~h--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  184 (377)
T 3dwl_C          128 YFEQENDW----------------W-----VSKHLKRPL--RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP  184 (377)
T ss_dssp             CC-----C----------------C-----CCEEECSSC--CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred             EECCcccc----------------e-----eeeEeeccc--CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence            99774210                0     0112222 3  67899999999998887    899999998543321100


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      ...                                                          .+....         ....
T Consensus       185 ~~~----------------------------------------------------------~~~~~~---------~~~~  197 (377)
T 3dwl_C          185 EAS----------------------------------------------------------VWGSRL---------PFNT  197 (377)
T ss_dssp             CSC----------------------------------------------------------SSCSCC---------CEEE
T ss_pred             ccc----------------------------------------------------------cccccc---------chhh
Confidence            000                                                          000000         0000


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc--cceeeecCCCCceEEEEeCCCCCCeE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC--HPDLRLRGHQKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~h~~~i~~~~~s~~~~~~l  313 (384)
                      ..... .|.+.|.+++|+|+++ +|++++.||.|++||++        .+..  ..+..+.+|..+|.+++|+|++ .+|
T Consensus       198 ~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~--------~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l  266 (377)
T 3dwl_C          198 VCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPS--------APEQPPRALITVKLSQLPLRSLLWANES-AIV  266 (377)
T ss_dssp             EEECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-CEEC--------STTSCEEECCCEECSSSCEEEEEEEETT-EEE
T ss_pred             hhhcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEEEECC--------CCCCcceeeEeecCCCCceEEEEEcCCC-CEE
Confidence            12222 7899999999999995 99999999999999997        3332  1256788999999999999998 799


Q ss_pred             EEeeCCCcEEEEecC
Q psy4577         314 LSASDDHTICLWDIN  328 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~  328 (384)
                      ++|+.|+.+ +|+..
T Consensus       267 ~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          267 AAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEESSSSEE-EECCC
T ss_pred             EEEcCCcEE-EEEeC
Confidence            998876666 66654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.2e-29  Score=220.79  Aligned_cols=271  Identities=11%  Similarity=0.061  Sum_probs=175.6

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEe-cccccceEEEEEcc-CCCcEEEEEecCCeEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNP-NEPWVICSVSEDNIMQI   79 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~l~~~~-~~~~~l~s~s~D~~i~v   79 (384)
                      .|+|++. .+++++      .|+...               +++..+ .+|.+.|++++|+| ++. +|++|+.|++|++
T Consensus        34 ~f~~~~~-~~~~~~------~w~~~g---------------~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~v   90 (437)
T 3gre_A           34 EFGPIQE-IVRSPN------MGNLRG---------------KLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKI   90 (437)
T ss_dssp             GGCCCCC-CCCCCC------GGGCCC---------------CEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEE
T ss_pred             hcCCccc-cccccc------cccccc---------------eEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEE
Confidence            4788887 566665      387553               667777 89999999999999 888 8899999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccc---ccccc
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKN---TPFLY  152 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~---~~~~~  152 (384)
                      ||+...+                   ...........+|  ...|.+++|+|++..++    |+++++|++.   .....
T Consensus        91 wd~~~~~-------------------~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  149 (437)
T 3gre_A           91 WNLKEII-------------------VGEVYSSSLTYDC--SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV  149 (437)
T ss_dssp             EEHHHHH-------------------TTCCCSCSEEEEC--SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE
T ss_pred             eECcccc-------------------cCcccceeeeccC--CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee
Confidence            9997620                   0000000011123  67899999999998887    8999999985   32222


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                      .....+    +...+.+.+...                     ..........+.+++..+.....|.....|+.    .
T Consensus       150 ~~~~~~----~i~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~----~  200 (437)
T 3gre_A          150 KFLNCE----CIRKINLKNFGK---------------------NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI----R  200 (437)
T ss_dssp             EEEEEE----EEEEEEGGGGSS---------------------CCCEEEEEEEECSSCEEEEEEETTSEEEEEET----T
T ss_pred             eccccc----eeEEEEccCccc---------------------ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC----C
Confidence            222211    112222222110                     00011111112233334444444444444322    1


Q ss_pred             CceeEEEEee--cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec-CCCCceEEEEeC---
Q psy4577         233 GKIEIEIKIN--HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR-GHQKEGYGLSWN---  306 (384)
Q Consensus       233 ~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~s---  306 (384)
                      .......+..  |.+.|++++|+|++. +|++|+.||.|++||++        .+  .++..+. +|..+|++++|+   
T Consensus       201 ~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~--------~~--~~~~~~~~~~~~~v~~~~~~~~~  269 (437)
T 3gre_A          201 TLERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIR--------FN--VLIRSWSFGDHAPITHVEVCQFY  269 (437)
T ss_dssp             TCCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETT--------TT--EEEEEEBCTTCEEEEEEEECTTT
T ss_pred             CCeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcC--------Cc--cEEEEEecCCCCceEEEEecccc
Confidence            1222444445  899999999999985 99999999999999996        33  3445554 778899999555   


Q ss_pred             -CCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec--------------------------cCCcEeEEEEecCC
Q psy4577         307 -PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG--------------------------HTAVVELELIERLT  359 (384)
Q Consensus       307 -~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--------------------------h~~~v~~~~~sp~~  359 (384)
                       |++ .+|++|+.||+|++||+++++       ++..+.+                          |...|++++|+ ++
T Consensus       270 s~~~-~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~  340 (437)
T 3gre_A          270 GKNS-VIVVGGSSKTFLTIWNFVKGH-------CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND  340 (437)
T ss_dssp             CTTE-EEEEEESTTEEEEEEETTTTE-------EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred             CCCc-cEEEEEcCCCcEEEEEcCCCc-------EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence             466 699999999999999999886       5555543                          55567777777 55


Q ss_pred             Cccccc
Q psy4577         360 KKADPV  365 (384)
Q Consensus       360 ~~~~~~  365 (384)
                      +.+++.
T Consensus       341 ~~l~s~  346 (437)
T 3gre_A          341 KILLTD  346 (437)
T ss_dssp             EEEEEE
T ss_pred             eEEEec
Confidence            544444

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-27  Score=214.19  Aligned_cols=230  Identities=11%  Similarity=-0.001  Sum_probs=153.4

Q ss_pred             cccccceEEEEEccCCCcEEEEEecCCeEEEEEcc--cCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeE
Q psy4577          49 GGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVV--CVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLT  126 (384)
Q Consensus        49 ~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  126 (384)
                      .+|.+.|++++|+|+++.++++++.|++|++||+.  .++.                        ...+..|.....+.+
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~------------------------~~~~~~~~~~~~v~~  154 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV------------------------LKLRKRFCFSKRPNA  154 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC------------------------EEEEEEEECSSCEEE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce------------------------eeeeecccCCCCceE
Confidence            35777899999999999556899999999999997  4311                        122333444678999


Q ss_pred             EEEecCceeee----cceeeeeccccccccc----eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577         127 AQWLPDVTRVI----NEEYKIWKKNTPFLYD----LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH  198 (384)
Q Consensus       127 ~~~~~~~~~~~----d~~v~~w~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (384)
                      ++|+|++..++    ++.+++|++.......    .+..+.  .++.++.|.|+..                        
T Consensus       155 ~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~~~------------------------  208 (450)
T 2vdu_B          155 ISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV--SMLTDVHLIKDSD------------------------  208 (450)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS--SCEEEEEEEECTT------------------------
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeeccc--CceEEEEEcCCCC------------------------
Confidence            99999998887    7889999886654332    222221  1233344443300                        


Q ss_pred             EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q psy4577         199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP  278 (384)
Q Consensus       199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~  278 (384)
                                .+..++....|.....|..   ..+........+|...|.+++|+ ++. +|++++.|+.|++||++   
T Consensus       209 ----------~~~~l~s~~~d~~i~vwd~---~~~~~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~---  270 (450)
T 2vdu_B          209 ----------GHQFIITSDRDEHIKISHY---PQCFIVDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWK---  270 (450)
T ss_dssp             ----------SCEEEEEEETTSCEEEEEE---SCTTCEEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETT---
T ss_pred             ----------CCcEEEEEcCCCcEEEEEC---CCCceeeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECC---
Confidence                      0222222233333332211   01222222245799999999999 885 99999999999999996   


Q ss_pred             CCCCCCCCccceeeec-------------------------CCCCceEEEEeCCCCCCeEEEee-CCCcEEEEec--CCC
Q psy4577         279 SKPDPNGECHPDLRLR-------------------------GHQKEGYGLSWNPSLNGYLLSAS-DDHTICLWDI--NAT  330 (384)
Q Consensus       279 ~~~~~~~~~~~~~~~~-------------------------~h~~~i~~~~~s~~~~~~l~s~s-~Dg~i~iwd~--~~~  330 (384)
                           .+..  +..+.                         .+...|.+++|+|++ .+|++++ .|+.|++|++  ..+
T Consensus       271 -----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~  342 (450)
T 2vdu_B          271 -----TGKN--LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQK  342 (450)
T ss_dssp             -----TCCE--EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSST
T ss_pred             -----CCcE--eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCC
Confidence                 3332  22332                         233578999999998 6888888 8999999999  443


Q ss_pred             CCCCccccceeeeeccCCcEeEEEEecCC
Q psy4577         331 PKENRVIDAKTIFTGHTAVVELELIERLT  359 (384)
Q Consensus       331 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~  359 (384)
                      .    .+..+..+.+| ..|.+++|+|++
T Consensus       343 ~----~l~~~~~~~~~-~~v~~~~~~~~~  366 (450)
T 2vdu_B          343 G----DLALKQIITFP-YNVISLSAHNDE  366 (450)
T ss_dssp             T----CEEEEEEEECS-SCEEEEEEETTE
T ss_pred             C----ceeeccEeccC-CceEEEEecCCc
Confidence            1    12267778888 889999999954

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.4e-28  Score=212.68  Aligned_cols=228  Identities=14%  Similarity=0.092  Sum_probs=162.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccccc-----ceEEEEEccCCCcEEEEEecCC
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-----KISDFSWNPNEPWVICSVSEDN   75 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~-----~V~~l~~~~~~~~~l~s~s~D~   75 (384)
                      |+|||+|. +||+++.||.|+|||.+                .++..+. |..     .|.+++|||+|+ +||+|+.||
T Consensus        91 vawSPdG~-~LAs~s~dg~V~iwd~~----------------~~l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~DG  151 (588)
T 2j04_A           91 CKPSPIDD-WMAVLSNNGNVSVFKDN----------------KMLTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGNEDG  151 (588)
T ss_dssp             EEECSSSS-CEEEEETTSCEEEEETT----------------EEEEECC-CSSCSTTTCEEEEEECSSSS-CEEEEETTS
T ss_pred             EEECCCCC-EEEEEeCCCcEEEEeCC----------------ceeeecc-CCCccccccEEEEEEcCCCC-EEEEEcCCC
Confidence            58999998 79999999999999964                3555556 665     499999999999 889999999


Q ss_pred             eEEEEEcccCCCccchhheeeeeeeEEEeccCCc--ccccce----eeeeeccCeeEEEEecCceeee---cceeeeecc
Q psy4577          76 IMQILSVVCVEPFDDAVEERVINEEYKIWKKNTP--FLYDLV----MTHALEWPSLTAQWLPDVTRVI---NEEYKIWKK  146 (384)
Q Consensus        76 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~  146 (384)
                      +|++||+.++...                   .+  .....+    .+|  ...|.+++|+|+| .++   |+++++|+.
T Consensus       152 tVkIWd~~~~~l~-------------------~~~~i~l~ti~~~~~gh--~~~V~sVawSPdg-Laass~D~tVrlWd~  209 (588)
T 2j04_A          152 ELQFFSIRKNSEN-------------------TPEFYFESSIRLSDAGS--KDWVTHIVWYEDV-LVAALSNNSVFSMTV  209 (588)
T ss_dssp             EEEEEECCCCTTT-------------------CCCCEEEEEEECSCTTC--CCCEEEEEEETTE-EEEEETTCCEEEECC
T ss_pred             EEEEEECCCCccc-------------------cccceeeeeeecccccc--cccEEEEEEcCCc-EEEEeCCCeEEEEEC
Confidence            9999999874110                   00  011122    234  5689999999999 444   999999987


Q ss_pred             ccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCC
Q psy4577         147 NTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFG  226 (384)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~  226 (384)
                      .+.....                                                                         
T Consensus       210 ~~~~~~~-------------------------------------------------------------------------  216 (588)
T 2j04_A          210 SASSHQP-------------------------------------------------------------------------  216 (588)
T ss_dssp             CSSSSCC-------------------------------------------------------------------------
T ss_pred             CCCcccc-------------------------------------------------------------------------
Confidence            5433200                                                                         


Q ss_pred             CccCCCCceeEEEE-eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEe
Q psy4577         227 GFGSVSGKIEIEIK-INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSW  305 (384)
Q Consensus       227 ~~~~~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  305 (384)
                               ....+ .+|...|.+++|+  + ..+|+++ ++.|++||+.         +..... ...+|...|.+++|
T Consensus       217 ---------~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~---------~~~~~~-~~~gh~~~V~~va~  273 (588)
T 2j04_A          217 ---------VSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLK---------NYSISS-LKTGSLENFHIIPL  273 (588)
T ss_dssp             ---------CEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETT---------TTEEEE-EECSCCSCCCEEEE
T ss_pred             ---------ceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECC---------CCeEEE-EEcCCCceEEEEEe
Confidence                     01111 2577889999999  5 4888887 6999999985         222112 22389999999999


Q ss_pred             --CCCCCCeEEEeeCCCcEEEEecCCCCC--CCc--------------cccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         306 --NPSLNGYLLSASDDHTICLWDINATPK--ENR--------------VIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       306 --s~~~~~~l~s~s~Dg~i~iwd~~~~~~--~~~--------------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                        +|++ ..|++++.||+ ++|....-..  .+.              .-..+..+.+ ...|++++|||+|+.++..-.
T Consensus       274 ~~s~d~-~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          274 NHEKES-TILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             TTCSSC-EEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             eeCCCC-CEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence              9998 79999999999 9998742100  000              0002333333 556999999999998877654


Q ss_pred             c
Q psy4577         368 L  368 (384)
Q Consensus       368 ~  368 (384)
                      .
T Consensus       351 i  351 (588)
T 2j04_A          351 M  351 (588)
T ss_dssp             E
T ss_pred             c
Confidence            4

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=1.4e-28  Score=218.84  Aligned_cols=202  Identities=12%  Similarity=0.128  Sum_probs=152.4

Q ss_pred             eEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccC
Q psy4577          44 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWP  123 (384)
Q Consensus        44 ~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (384)
                      +.....+|...|+||+|+|....+||+|+.||+|+|||+..++..                      ....+.+|  ...
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~----------------------~~~~~~gH--~~~  166 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP----------------------TFIKGIGA--GGS  166 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC----------------------EEECCCSS--SCC
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce----------------------eEEEccCC--CCC
Confidence            344556889999999999976668999999999999999764110                      00122345  678


Q ss_pred             eeEEEEec-Cceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577         124 SLTAQWLP-DVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH  198 (384)
Q Consensus       124 v~~~~~~~-~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (384)
                      |.+++|+| ++..++    |++|++||+.+.......                                           
T Consensus       167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-------------------------------------------  203 (435)
T 4e54_B          167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA-------------------------------------------  203 (435)
T ss_dssp             CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE-------------------------------------------
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe-------------------------------------------
Confidence            99999998 566666    899999987542211000                                           


Q ss_pred             EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q psy4577         199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP  278 (384)
Q Consensus       199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~  278 (384)
                                                              ....+...+.+++|+|++. +|++|+.||.|++||++   
T Consensus       204 ----------------------------------------~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~---  239 (435)
T 4e54_B          204 ----------------------------------------SSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMD---  239 (435)
T ss_dssp             ----------------------------------------CCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESS---
T ss_pred             ----------------------------------------ccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccC---
Confidence                                                    0001234567899999995 99999999999999985   


Q ss_pred             CCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecC
Q psy4577         279 SKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERL  358 (384)
Q Consensus       279 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  358 (384)
                            +.  .+..+.+|...|++++|+|+++.+|++|+.|++|+|||+++.+..    ..+....+|...|++++|+|+
T Consensus       240 ------~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~spd  307 (435)
T 4e54_B          240 ------GK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK----ASFLYSLPHRHPVNAACFSPD  307 (435)
T ss_dssp             ------SC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS----SCCSBCCBCSSCEEECCBCTT
T ss_pred             ------cc--eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccccc----ceEEEeeeccccccceeECCC
Confidence                  22  345788999999999999998668999999999999999987521    123334679999999999999


Q ss_pred             CCcccccccc
Q psy4577         359 TKKADPVCTL  368 (384)
Q Consensus       359 ~~~~~~~c~~  368 (384)
                      +..+++.+..
T Consensus       308 g~~l~s~~~D  317 (435)
T 4e54_B          308 GARLLTTDQK  317 (435)
T ss_dssp             SSEEEEEESS
T ss_pred             CCeeEEEcCC
Confidence            9988776543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=2.4e-27  Score=212.96  Aligned_cols=277  Identities=15%  Similarity=0.137  Sum_probs=184.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc--CCCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP--NEPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~--~~~~~l~s~s~D~~i~   78 (384)
                      ++|+|++  +|++|+.||+|++||+.+              .+.+..+.+|.+.|.+++|++  ++. ++++++.|++|+
T Consensus       168 l~~~~~~--~l~s~s~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~  230 (464)
T 3v7d_B          168 LKYAHGG--ILVSGSTDRTVRVWDIKK--------------GCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLH  230 (464)
T ss_dssp             EEECSTT--EEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEE
T ss_pred             EEEcCCC--EEEEEeCCCCEEEEECCC--------------CcEEEEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEE
Confidence            4678876  799999999999999986              467788899999999999985  556 788999999999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccce
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDL  154 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~  154 (384)
                      +||+................ .........+.+...+.+|  ...+.++  ++++..++    |+.+++||+.+......
T Consensus       231 vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  305 (464)
T 3v7d_B          231 VWKLPKESSVPDHGEEHDYP-LVFHTPEENPYFVGVLRGH--MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYI  305 (464)
T ss_dssp             EEECCCCCCC------CCSS-EEESCGGGCTTEEEEECCC--SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EeeCCCCcccccccccCCcc-eEeeccCCCeEEEEEccCc--cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            99998764332211110000 0000011112222344444  4445554  67777776    99999999977655433


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      +..+..  +                                     +..+.+++++..+.+...|.....|..    ...
T Consensus       306 ~~~~~~--~-------------------------------------v~~~~~~~~~~~l~sg~~dg~i~vwd~----~~~  342 (464)
T 3v7d_B          306 LSGHTD--R-------------------------------------IYSTIYDHERKRCISASMDTTIRIWDL----ENG  342 (464)
T ss_dssp             ECCCSS--C-------------------------------------EEEEEEETTTTEEEEEETTSCEEEEET----TTT
T ss_pred             ecCCCC--C-------------------------------------EEEEEEcCCCCEEEEEeCCCcEEEEEC----CCC
Confidence            333221  1                                     233333333333333344444333321    122


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                      .......+|...|.+++|++   .+|++++.||.|++||++        ...  ..... .|...+..++|+|++ .+|+
T Consensus       343 ~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~--------~~~--~~~~~-~~~~~~~~~~~~~~~-~~l~  407 (464)
T 3v7d_B          343 ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDAN--------DYS--RKFSY-HHTNLSAITTFYVSD-NILV  407 (464)
T ss_dssp             EEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETT--------TCC--EEEEE-ECTTCCCEEEEEECS-SEEE
T ss_pred             cEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECC--------CCc--eeeee-cCCCCccEEEEEeCC-CEEE
Confidence            23556678999999999984   489999999999999996        222  22222 366678889999998 7999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccccceee-eeccCCcEeEEEEecCCCccccccc
Q psy4577         315 SASDDHTICLWDINATPKENRVIDAKTI-FTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      +|+ ||.|++||+++++       .+.. +.+|...|++++|+  +..+...+.
T Consensus       408 ~~~-dg~i~iwd~~~g~-------~~~~~~~~~~~~v~~v~~~--~~~l~~~~~  451 (464)
T 3v7d_B          408 SGS-ENQFNIYNLRSGK-------LVHANILKDADQIWSVNFK--GKTLVAAVE  451 (464)
T ss_dssp             EEE-TTEEEEEETTTCC-------EEESCTTTTCSEEEEEEEE--TTEEEEEEE
T ss_pred             Eec-CCeEEEEECCCCc-------EEehhhccCCCcEEEEEec--CCEEEEEEE
Confidence            988 9999999999998       7775 66799999999997  455554443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=8.4e-28  Score=207.35  Aligned_cols=227  Identities=17%  Similarity=0.243  Sum_probs=153.4

Q ss_pred             CCCCC--CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccC--CCcEEEEEecCCe
Q psy4577           1 VQWSP--HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVICSVSEDNI   76 (384)
Q Consensus         1 v~fsp--~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~--~~~~l~s~s~D~~   76 (384)
                      ++|+|  ++. +||+|+.|+.|+|||+.......     .....+.+..+.+|.+.|.+++|+|+  +. +|++++.|+.
T Consensus        63 ~~~~~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~  135 (351)
T 3f3f_A           63 IDWASPEYGR-IIASASYDKTVKLWEEDPDQEEC-----SGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGI  135 (351)
T ss_dssp             EEECCGGGCS-EEEEEETTSCEEEEEECTTSCTT-----SSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCE
T ss_pred             EEEcCCCCCC-EEEEEcCCCeEEEEecCCCcccc-----cccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCc
Confidence            46888  465 89999999999999998632110     01112567778899999999999999  88 7889999999


Q ss_pred             EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC---ceeee----cceeeeeccccc
Q psy4577          77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD---VTRVI----NEEYKIWKKNTP  149 (384)
Q Consensus        77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~----d~~v~~w~~~~~  149 (384)
                      |++||+..++........    .....       +  .+........+.+++|+|+   +..++    ++.+.+|+....
T Consensus       136 v~iwd~~~~~~~~~~~~~----~~~~~-------~--~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~  202 (351)
T 3f3f_A          136 LRLYDALEPSDLRSWTLT----SEMKV-------L--SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG  202 (351)
T ss_dssp             EEEEECSSTTCTTCCEEE----EEEES-------C--SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS
T ss_pred             EEEecCCChHHhcccccc----ccccc-------c--ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC
Confidence            999999876432211100    00000       0  0011112456778888886   44443    333222211100


Q ss_pred             cccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCcc
Q psy4577         150 FLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFG  229 (384)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~  229 (384)
                                                                                                      
T Consensus       203 --------------------------------------------------------------------------------  202 (351)
T 3f3f_A          203 --------------------------------------------------------------------------------  202 (351)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCceeEEEEeecCCceEEEEEcCCCC---cEEEEEeCCCcEEEEecCCCCCCCC------------------------
Q psy4577         230 SVSGKIEIEIKINHEGEVNRARYMPQNP---CVIATKTPSSDVLVFDYTKHPSKPD------------------------  282 (384)
Q Consensus       230 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~---~~l~s~s~dg~i~iwd~~~~~~~~~------------------------  282 (384)
                         .........+|...|++++|+|++.   .+|++|+.||.|++||++.......                        
T Consensus       203 ---~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (351)
T 3f3f_A          203 ---KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGR  279 (351)
T ss_dssp             ---CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------------
T ss_pred             ---ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccc
Confidence               0011333446889999999999973   4999999999999999974211000                        


Q ss_pred             ------------CCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577         283 ------------PNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       283 ------------~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                                  .......+..+.+|...|++++|+|++ .+|++|+.||.|++||+.+++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          280 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             -----------CCSEEEEEEEEECTTSSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTS
T ss_pred             cccccceeeeecccccccEEEEEecccccEEEEEEcCCC-CEEEEecCCCcEEEEecCcCc
Confidence                        000124566788999999999999998 799999999999999999876

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=1e-27  Score=209.00  Aligned_cols=246  Identities=13%  Similarity=0.114  Sum_probs=170.4

Q ss_pred             cccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEE
Q psy4577          49 GGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ  128 (384)
Q Consensus        49 ~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  128 (384)
                      ..|.++|++++|+|+++ +|++++.|+.|++||+.+++              .        .....+.+|  ...|.+++
T Consensus         5 ~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~--------------~--------~~~~~~~~h--~~~v~~~~   59 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNK--------------W--------VQVHELKEH--NGQVTGVD   59 (372)
T ss_dssp             ESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTE--------------E--------EEEEEEECC--SSCEEEEE
T ss_pred             cccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCc--------------E--------EeeeeecCC--CCcccEEE
Confidence            45889999999999999 88899999999999997741              0        011123344  66899999


Q ss_pred             EecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEe
Q psy4577         129 WLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASV  204 (384)
Q Consensus       129 ~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  204 (384)
                      |+|+++.++    |+.+++|++................++.++.|.++                                
T Consensus        60 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------------------  107 (372)
T 1k8k_C           60 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN--------------------------------  107 (372)
T ss_dssp             EETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT--------------------------------
T ss_pred             EeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC--------------------------------
Confidence            999998887    89999999866543222211111222334444433                                


Q ss_pred             ecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCC-
Q psy4577         205 QLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDP-  283 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-  283 (384)
                           +..+.....|.....|.................|...|.+++|+|++. +|++++.||.|++||++........ 
T Consensus       108 -----~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~  181 (372)
T 1k8k_C          108 -----EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPA  181 (372)
T ss_dssp             -----SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred             -----CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEccccccccccc
Confidence                 222222222222222211110001112223356889999999999995 9999999999999997532111000 


Q ss_pred             -------CCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577         284 -------NGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIE  356 (384)
Q Consensus       284 -------~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  356 (384)
                             ......+..+.+|...|.+++|+|++ .+|++++.||.|++||+++++       ++..+..|..+|++++|+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~  253 (372)
T 1k8k_C          182 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKM-------AVATLASETLPLLAVTFI  253 (372)
T ss_dssp             CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTT-------EEEEEECSSCCEEEEEEE
T ss_pred             ccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc-------eeEEEccCCCCeEEEEEe
Confidence                   01123456778999999999999998 799999999999999999988       899999999999999999


Q ss_pred             cCCCccccc
Q psy4577         357 RLTKKADPV  365 (384)
Q Consensus       357 p~~~~~~~~  365 (384)
                      |++..+++.
T Consensus       254 ~~~~~l~~~  262 (372)
T 1k8k_C          254 TESSLVAAG  262 (372)
T ss_dssp             ETTEEEEEE
T ss_pred             cCCCEEEEE
Confidence            999866544

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.5e-29  Score=218.58  Aligned_cols=252  Identities=8%  Similarity=-0.018  Sum_probs=176.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|||||+ ++||++.|++|+  |...              ++   .+.||...|.+++|+|+|        .++++.+|
T Consensus        21 v~~SpDG~-~iASas~D~TV~--d~~~--------------~~---~l~gh~~~v~~V~FsPdg--------~~~~~~~~   72 (588)
T 2j04_A           21 LTWARDGT-LYLTTFPDISIG--QPKY--------------AK---DINCNSKNLFHVKEFPLE--------FENKLDFE   72 (588)
T ss_dssp             EEECTTSC-EEEECSSSEEEE--EECC--------------CS---CCSSBGGGTEEEEEECCC--------CCCTTTTS
T ss_pred             EEECCCCC-EEEEEcCCceee--cccc--------------cc---eecCCCccEEEEEECCCC--------CcceEEEE
Confidence            57999997 899999999999  7443              12   226999999999999998        45665555


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      +.+....+                          -.+|  ...|.+++|+|+|..++    +|++++|+...  +...+.
T Consensus        73 ~~~~~~~~--------------------------~~~~--~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~  122 (588)
T 2j04_A           73 LAQQNGLL--------------------------NSQP--VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD  122 (588)
T ss_dssp             CCCSSCSS--------------------------TTSC--SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC
T ss_pred             eCCCceEe--------------------------ecCC--CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc
Confidence            54332110                          0022  56799999999999888    99999999644  111111


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc--
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK--  234 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--  234 (384)
                       +...                                  -....+.++++++++..+.+...|...+.|.........  
T Consensus       123 -~~~~----------------------------------~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~  167 (588)
T 2j04_A          123 -SKGN----------------------------------LSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE  167 (588)
T ss_dssp             -CSSC----------------------------------STTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred             -CCCc----------------------------------cccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence             1100                                  000125567777777777777777777766543321111  


Q ss_pred             -eeEEEE----eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcc-ceeee-cCCCCceEEEEeCC
Q psy4577         235 -IEIEIK----INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECH-PDLRL-RGHQKEGYGLSWNP  307 (384)
Q Consensus       235 -~~~~~~----~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~h~~~i~~~~~s~  307 (384)
                       ..+...    .+|...|.+++|+|+|   +++++.|++|++||+.        .+... ...++ .+|...|.+++|+ 
T Consensus       168 ~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~--------~~~~~~~~~tL~~~h~~~V~svaFs-  235 (588)
T 2j04_A          168 FYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVS--------ASSHQPVSRMIQNASRRKITDLKIV-  235 (588)
T ss_dssp             CEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCC--------SSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred             ceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECC--------CCccccceeeecccccCcEEEEEEE-
Confidence             123343    5678899999999988   6778889999999985        22221 23456 4788999999999 


Q ss_pred             CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEE--ecCCCccccccc
Q psy4577         308 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELI--ERLTKKADPVCT  367 (384)
Q Consensus       308 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--sp~~~~~~~~c~  367 (384)
                       | ++||+++ |++|++||+.+++       ......+|.+.|++++|  +|++..++....
T Consensus       236 -g-~~LASa~-~~tIkLWd~~~~~-------~~~~~~gh~~~V~~va~~~s~d~~~La~a~e  287 (588)
T 2j04_A          236 -D-YKVVLTC-PGYVHKIDLKNYS-------ISSLKTGSLENFHIIPLNHEKESTILLMSNK  287 (588)
T ss_dssp             -T-TEEEEEC-SSEEEEEETTTTE-------EEEEECSCCSCCCEEEETTCSSCEEEEECSS
T ss_pred             -C-CEEEEEe-CCeEEEEECCCCe-------EEEEEcCCCceEEEEEeeeCCCCCEEEEEcC
Confidence             5 6999987 6999999999875       42333389999999999  999987666653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=1.1e-26  Score=203.33  Aligned_cols=239  Identities=11%  Similarity=0.111  Sum_probs=164.6

Q ss_pred             CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec
Q psy4577          42 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE  121 (384)
Q Consensus        42 ~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (384)
                      ..+...+.+|.+.|++++|+|++..+|++|+.|++|++||+.+++..             .           .+....+.
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~-----------~~~~~~h~  118 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-------------S-----------FIQGMGPG  118 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-------------E-----------EECCCSTT
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-------------e-----------eeecCCcC
Confidence            46677889999999999999999338999999999999999864211             1           11111126


Q ss_pred             cCeeEEEEec-Cceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCC
Q psy4577         122 WPSLTAQWLP-DVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQ  196 (384)
Q Consensus       122 ~~v~~~~~~~-~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (384)
                      ..|.+++|+| ++..++    |+.+++||+.+.....+........                                  
T Consensus       119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------------------------------  164 (383)
T 3ei3_B          119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDY----------------------------------  164 (383)
T ss_dssp             CBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSC----------------------------------
T ss_pred             CceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCC----------------------------------
Confidence            7899999999 667766    8999999997643322211111111                                  


Q ss_pred             CeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCC
Q psy4577         197 NHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK  276 (384)
Q Consensus       197 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~  276 (384)
                         .+..+.+++++..+.....|.....|..    .+. .......|...|.+++|+|+++.+|++|+.|+.|++||++.
T Consensus       165 ---~v~~~~~~~~~~~l~~~~~d~~i~i~d~----~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          165 ---WYCCVDVSVSRQMLATGDSTGRLLLLGL----DGH-EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             ---CEEEEEEETTTTEEEEEETTSEEEEEET----TSC-EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             ---CeEEEEECCCCCEEEEECCCCCEEEEEC----CCC-EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCC
Confidence               1333333334333333344444333322    122 35556689999999999999966999999999999999973


Q ss_pred             CCCCCCCCCCccceeeecCCCCceEEEEeCC-CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccC--------
Q psy4577         277 HPSKPDPNGECHPDLRLRGHQKEGYGLSWNP-SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHT--------  347 (384)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~--------  347 (384)
                      ..      .....+..+ +|...|.+++|+| ++ .+|++++.|+.|++||+++++       .+..+.+|.        
T Consensus       237 ~~------~~~~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~  301 (383)
T 3ei3_B          237 IK------DKNSYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWS-------KPDQIIIHPHRQFQHLT  301 (383)
T ss_dssp             CC------STTCEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTT-------SCSEEEECCBCCCTTSC
T ss_pred             CC------cccceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCc-------ccccccccccccccccc
Confidence            11      011233334 7999999999999 98 799999999999999999887       555555443        


Q ss_pred             ---------CcEeEEEEecCCCc
Q psy4577         348 ---------AVVELELIERLTKK  361 (384)
Q Consensus       348 ---------~~v~~~~~sp~~~~  361 (384)
                               ..+..++|+|++..
T Consensus       302 ~~~~~~~p~~~~~~~~~s~dg~~  324 (383)
T 3ei3_B          302 PIKATWHPMYDLIVAGRYPDDQL  324 (383)
T ss_dssp             CCCCEECSSSSEEEEECBCCTTT
T ss_pred             ceEEeccCCCCceEEEecCCccc
Confidence                     34445677776655

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.96  E-value=1.4e-27  Score=210.04  Aligned_cols=247  Identities=8%  Similarity=-0.031  Sum_probs=164.6

Q ss_pred             CCCCCC----C---CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccc-----ccceEEEEEc----cCC
Q psy4577           1 VQWSPH----N---ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-----TAKISDFSWN----PNE   64 (384)
Q Consensus         1 v~fsp~----~---~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh-----~~~V~~l~~~----~~~   64 (384)
                      ++|+|+    +   . +||+++.|+.|++||+.+...         ........+.+|     ...|.+++|+    |++
T Consensus        68 ~~~~~~~~~~g~~~~-~l~s~~~dg~i~iw~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  137 (397)
T 1sq9_A           68 VDVLQAIERDAFELC-LVATTSFSGDLLFYRITREDE---------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL  137 (397)
T ss_dssp             EEEEEEEETTTEEEE-EEEEEETTSCEEEEEEEECTT---------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred             EEEecccccCCcccc-EEEEEcCCCCEEEEEccCCcc---------cccccceeecccccccCCCcEEEEEEeeccCCCC
Confidence            357777    6   6 799999999999999986210         111226677788     5899999999    999


Q ss_pred             CcE-EEEEecCCeEEEEEccc------CCCccchhheeeeeeeEEEeccCCcccccceee-----eeeccCeeEEEEecC
Q psy4577          65 PWV-ICSVSEDNIMQILSVVC------VEPFDDAVEERVINEEYKIWKKNTPFLYDLVMT-----HALEWPSLTAQWLPD  132 (384)
Q Consensus        65 ~~~-l~s~s~D~~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~  132 (384)
                      . + |++++.|+.|++||+..      ++.+.              |...     ..+.+     +.....+.+++|+|+
T Consensus       138 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~  197 (397)
T 1sq9_A          138 S-HRLVATDVKGTTYIWKFHPFADESNSLTLN--------------WSPT-----LELQGTVESPMTPSQFATSVDISER  197 (397)
T ss_dssp             C-EEEEEEETTSCEEEEEEESSSSHHHHTTTC--------------CCCE-----EEEEEEECCSSSSCCCCCEEEECTT
T ss_pred             c-eEEEEEeCCCcEEEEeCCccccccccceee--------------ccCc-----ceeeeeeccccCCCCCceEEEECCC
Confidence            9 6 88999999999999987      32211              0000     01111     223667899999999


Q ss_pred             ceeee----cceeeeeccccccccceeec---cc-ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEe
Q psy4577         133 VTRVI----NEEYKIWKKNTPFLYDLVMT---HA-LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASV  204 (384)
Q Consensus       133 ~~~~~----d~~v~~w~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  204 (384)
                      + .++    ++.+++||+........+..   +. ...+..++.|.|+.                               
T Consensus       198 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~-------------------------------  245 (397)
T 1sq9_A          198 G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG-------------------------------  245 (397)
T ss_dssp             S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST-------------------------------
T ss_pred             c-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC-------------------------------
Confidence            9 666    89999999987654433333   20 02223444554432                               


Q ss_pred             ecCCCCccccccccc---CcCCCCCCccCCCCceeEEEEee-------------cCCceEEEEEcCCCCcEEEEEeCCCc
Q psy4577         205 QLPNEDAQFDASNYD---TDKGDFGGFGSVSGKIEIEIKIN-------------HEGEVNRARYMPQNPCVIATKTPSSD  268 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~v~~~p~~~~~l~s~s~dg~  268 (384)
                            ..+.+...|   .....|..    ...........             |...|.+++|+|+++ +|++++.||.
T Consensus       246 ------~~l~~~~~d~~~g~i~i~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~  314 (397)
T 1sq9_A          246 ------SLLAIAHDSNSFGCITLYET----EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGK  314 (397)
T ss_dssp             ------TEEEEEEEETTEEEEEEEET----TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSE
T ss_pred             ------CEEEEEecCCCCceEEEEEC----CCCcccceeccCcccccccccccccCCcEEEEEECCCCC-EEEEEeCCCe
Confidence                  222222222   11111111    01111333344             899999999999995 9999999999


Q ss_pred             EEEEecCCCCCCCCCCCCccceeeec------CC---------------CCceEEEEeCCCCC---------CeEEEeeC
Q psy4577         269 VLVFDYTKHPSKPDPNGECHPDLRLR------GH---------------QKEGYGLSWNPSLN---------GYLLSASD  318 (384)
Q Consensus       269 i~iwd~~~~~~~~~~~~~~~~~~~~~------~h---------------~~~i~~~~~s~~~~---------~~l~s~s~  318 (384)
                      |++||++        .+  +.+..+.      +|               ..+|++++|+|++.         .+|++++.
T Consensus       315 i~iwd~~--------~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~  384 (397)
T 1sq9_A          315 LRFWDVK--------TK--ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL  384 (397)
T ss_dssp             EEEEETT--------TT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET
T ss_pred             EEEEEcC--------CC--ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC
Confidence            9999986        33  3455666      77               89999999999972         49999999


Q ss_pred             CCcEEEEecCCC
Q psy4577         319 DHTICLWDINAT  330 (384)
Q Consensus       319 Dg~i~iwd~~~~  330 (384)
                      ||.|++||++++
T Consensus       385 dg~i~iw~~~~g  396 (397)
T 1sq9_A          385 DRSIRWFREAGG  396 (397)
T ss_dssp             TTEEEEEEEEC-
T ss_pred             CCcEEEEEcCCC
Confidence            999999999876

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=1.4e-26  Score=197.33  Aligned_cols=238  Identities=18%  Similarity=0.281  Sum_probs=161.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|+++ +||+|+.|++|+|||+++              .+.+..+.+|...+.++.+.  +. ++++++.++.+++|
T Consensus        73 v~~~~~~~-~l~sgs~Dg~v~iw~~~~--------------~~~~~~~~~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~  134 (318)
T 4ggc_A           73 VAWIKEGN-YLAVGTSSAEVQLWDVQQ--------------QKRLRNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHH  134 (318)
T ss_dssp             EEECTTSS-EEEEEETTSEEEEEETTT--------------TEEEEEEECCSSCEEEEEEE--TT-EEEEEETTSEEEEE
T ss_pred             EEECCCCC-EEEEEECCCcEEEeecCC--------------ceeEEEecCccceEEEeecC--CC-EEEEEecCCceEee
Confidence            47999997 899999999999999987              47788889999988877665  44 88999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee-
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV-  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~-  155 (384)
                      +......                       ....+.+|  ...+..+.|.++++.++    |+++++||.......... 
T Consensus       135 ~~~~~~~-----------------------~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  189 (318)
T 4ggc_A          135 DVRVAEH-----------------------HVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL  189 (318)
T ss_dssp             ETTSSSC-----------------------EEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS
T ss_pred             ecCCCce-----------------------eEEEEcCc--cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce
Confidence            9866311                       11123334  56788999999998887    899999998765432111 


Q ss_pred             -ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         156 -MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                       .......+...+.+.+...         ..+...+.  .....+.+                ||..            .
T Consensus       190 ~~~~~~~~~v~~~~~~~~~~---------~~~~~~~~--~~~~~i~l----------------wd~~------------~  230 (318)
T 4ggc_A          190 QTFTQHQGAVKAVAWCPWQS---------NVLATGGG--TSDRHIRI----------------WNVC------------S  230 (318)
T ss_dssp             EEECCCCSCEEEEEECTTST---------TEEEEEEC--TTTCEEEE----------------EETT------------T
T ss_pred             eeecccCCceEEEEecCCCC---------cEEEEEec--CCCCEEEE----------------Eecc------------c
Confidence             1111111112222222211         00000000  00111111                1111            1


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEE-EEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIA-TKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l  313 (384)
                      ........+...+..+.|+|.+..+++ +|+.|+.|+|||++        ++  +++..+.+|.++|++++|+|++ .+|
T Consensus       231 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~--------~~--~~~~~l~gH~~~V~~l~~spdg-~~l  299 (318)
T 4ggc_A          231 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP--------TM--AKVAELKGHTSRVLSLTMSPDG-ATV  299 (318)
T ss_dssp             CCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT--------TC--CEEEEECCCSSCEEEEEECTTS-SCE
T ss_pred             ccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECC--------CC--cEEEEEcCCCCCEEEEEEcCCC-CEE
Confidence            113344567888999999999864433 23479999999986        33  3567899999999999999999 799


Q ss_pred             EEeeCCCcEEEEecCCCC
Q psy4577         314 LSASDDHTICLWDINATP  331 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~~~~  331 (384)
                      ||||.||+|+|||+....
T Consensus       300 ~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          300 ASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEETTTEEEEECCSCCC
T ss_pred             EEEecCCeEEEEECCCCC
Confidence            999999999999997654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=5.6e-28  Score=210.05  Aligned_cols=242  Identities=14%  Similarity=0.169  Sum_probs=169.0

Q ss_pred             CCCCCC---CCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec--ccccceEEEEEccC----CCcEEEEE
Q psy4577           1 VQWSPH---NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPN----EPWVICSV   71 (384)
Q Consensus         1 v~fsp~---~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--gh~~~V~~l~~~~~----~~~~l~s~   71 (384)
                      |+|+|+   +..++++++.++.|+|||+.+.+.           ...+..+.  .|...|++++|+|+    +. +|++|
T Consensus        24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~   91 (366)
T 3k26_A           24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-----------IRLLQSYVDADADENFYTCAWTYDSNTSHP-LLAVA   91 (366)
T ss_dssp             EEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-----------EEEEEEEECSCTTCCEEEEEEEECTTTCCE-EEEEE
T ss_pred             EEEecccCCCCceEEEECCCCEEEEEEcCCCcE-----------EEeeeeccccCCCCcEEEEEeccCCCCCCC-EEEEe
Confidence            468884   444677777788999999985220           11222111  36688999999999    45 78999


Q ss_pred             ecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec-Cceeee----cceeeeecc
Q psy4577          72 SEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP-DVTRVI----NEEYKIWKK  146 (384)
Q Consensus        72 s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~----d~~v~~w~~  146 (384)
                      +.|++|++||+.+++.             +           ..+.+|  ...|.+++|+| ++..++    |+.|++||+
T Consensus        92 ~~dg~i~v~d~~~~~~-------------~-----------~~~~~~--~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~  145 (366)
T 3k26_A           92 GSRGIIRIINPITMQC-------------I-----------KHYVGH--GNAINELKFHPRDPNLLLSVSKDHALRLWNI  145 (366)
T ss_dssp             ETTCEEEEECTTTCCE-------------E-----------EEEESC--CSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             cCCCEEEEEEchhceE-------------e-----------eeecCC--CCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence            9999999999976411             1           122334  66899999999 777776    889999988


Q ss_pred             ccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCC
Q psy4577         147 NTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFG  226 (384)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~  226 (384)
                      ........                                                 +                      
T Consensus       146 ~~~~~~~~-------------------------------------------------~----------------------  154 (366)
T 3k26_A          146 QTDTLVAI-------------------------------------------------F----------------------  154 (366)
T ss_dssp             TTTEEEEE-------------------------------------------------E----------------------
T ss_pred             ecCeEEEE-------------------------------------------------e----------------------
Confidence            54322110                                                 0                      


Q ss_pred             CccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC--------CCC----------CCcc
Q psy4577         227 GFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP--------DPN----------GECH  288 (384)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~--------~~~----------~~~~  288 (384)
                                 .....|...|.+++|+|++. +|++++.||.|++||++......        .+.          ....
T Consensus       155 -----------~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (366)
T 3k26_A          155 -----------GGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP  222 (366)
T ss_dssp             -----------CSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred             -----------cccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence                       00025778899999999995 99999999999999986210000        000          0000


Q ss_pred             ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCC-------CccccceeeeeccCCcEeEEEEecC--C
Q psy4577         289 PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKE-------NRVIDAKTIFTGHTAVVELELIERL--T  359 (384)
Q Consensus       289 ~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~sp~--~  359 (384)
                      ......+|...|.+++|+  + .+|++++.||.|++||+++....       ......+..+.+|...|++++|+|+  +
T Consensus       223 ~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  299 (366)
T 3k26_A          223 DFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ  299 (366)
T ss_dssp             SEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred             ccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence            122334599999999998  5 69999999999999999887521       1111247778889999999999999  8


Q ss_pred             Ccccccc
Q psy4577         360 KKADPVC  366 (384)
Q Consensus       360 ~~~~~~c  366 (384)
                      ..+++.+
T Consensus       300 ~~l~~~~  306 (366)
T 3k26_A          300 KMLALGN  306 (366)
T ss_dssp             SEEEEEC
T ss_pred             cEEEEEe
Confidence            8766553

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.6e-26  Score=198.11  Aligned_cols=254  Identities=13%  Similarity=0.138  Sum_probs=181.7

Q ss_pred             CCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeee
Q psy4577          39 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTH  118 (384)
Q Consensus        39 ~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (384)
                      .+.......+.+|.+.|++++|+|+++ +|++++.|+.|++||+.+++.             +.           .+.+|
T Consensus        19 ~G~~~~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~-------------~~-----------~~~~h   73 (369)
T 3zwl_B           19 QGSHMKAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGER-------------LG-----------TLDGH   73 (369)
T ss_dssp             SCCSEEEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCE-------------EE-----------EECCC
T ss_pred             eccccccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchh-------------hh-----------hhhhc
Confidence            444556677899999999999999999 888999999999999977511             11           22334


Q ss_pred             eeccCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeec-c
Q psy4577         119 ALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHT-S  193 (384)
Q Consensus       119 ~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  193 (384)
                        ...|.+++|+|+++.++    |+.+++|++.+......+.   ...+...+.|.++..          .+..+... .
T Consensus        74 --~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~----------~l~~~~~~~~  138 (369)
T 3zwl_B           74 --TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK---SPVPVKRVEFSPCGN----------YFLAILDNVM  138 (369)
T ss_dssp             --SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSS----------EEEEEECCBT
T ss_pred             --CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee---cCCCeEEEEEccCCC----------EEEEecCCcc
Confidence              56799999999998887    8999999998766544433   233455666766542          12222111 0


Q ss_pred             CCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCC--ceEEEEEcCCCCcEEEEEeCCCcEEE
Q psy4577         194 DEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEG--EVNRARYMPQNPCVIATKTPSSDVLV  271 (384)
Q Consensus       194 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~v~~~p~~~~~l~s~s~dg~i~i  271 (384)
                      .....+.++.+.-......+..                ...........|.+  .+.+++|+|++. +|++++.||.|++
T Consensus       139 ~~~g~i~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i  201 (369)
T 3zwl_B          139 KNPGSINIYEIERDSATHELTK----------------VSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISK  201 (369)
T ss_dssp             TBCCEEEEEEEEECTTTCCEEE----------------ECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEE
T ss_pred             CCCCEEEEEEecCCccceeecc----------------cccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEE
Confidence            1123444444431110000000                00011233445666  999999999995 8999999999999


Q ss_pred             EecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEe
Q psy4577         272 FDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE  351 (384)
Q Consensus       272 wd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~  351 (384)
                      ||++        . ...++..+.+|...|.+++|+|++ .+|++++.||.|++||+++++       .+..+. +...+.
T Consensus       202 ~d~~--------~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~-------~~~~~~-~~~~~~  263 (369)
T 3zwl_B          202 YDVS--------N-NYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQ-------VLKKYE-TDCPLN  263 (369)
T ss_dssp             EETT--------T-TTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC-------EEEEEE-CSSCEE
T ss_pred             EECC--------C-CcEeEEEEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCc-------eeeeec-CCCCce
Confidence            9985        2 234566888999999999999998 799999999999999999987       777776 778899


Q ss_pred             EEEEecCCCccccccc
Q psy4577         352 LELIERLTKKADPVCT  367 (384)
Q Consensus       352 ~~~~sp~~~~~~~~c~  367 (384)
                      .++|+|+++.++..+.
T Consensus       264 ~~~~~~~~~~l~~~~~  279 (369)
T 3zwl_B          264 TAVITPLKEFIILGGG  279 (369)
T ss_dssp             EEEECSSSSEEEEEEC
T ss_pred             eEEecCCCceEEEeec
Confidence            9999999998776653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=6.8e-27  Score=208.14  Aligned_cols=255  Identities=15%  Similarity=0.192  Sum_probs=177.3

Q ss_pred             CCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEc
Q psy4577           3 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSV   82 (384)
Q Consensus         3 fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~   82 (384)
                      ++++++ +||+|+.||.|++||+.+              .+....+.+|.+.|++++|  ++. +|++|+.||+|++||+
T Consensus       139 ~~~d~~-~l~~g~~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          139 LQYDDQ-KIVSGLRDNTIKIWDKNT--------------LECKRILTGHTGSVLCLQY--DER-VIITGSSDSTVRVWDV  200 (435)
T ss_dssp             EECCSS-EEEEEESSSCEEEEESSS--------------CCEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEES
T ss_pred             EEECCC-EEEEEeCCCeEEEEeCCC--------------CeEEEEEcCCCCcEEEEEE--CCC-EEEEEcCCCeEEEEEC
Confidence            455675 799999999999999986              4677888999999999999  566 8899999999999999


Q ss_pred             ccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccc---ee
Q psy4577          83 VCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYD---LV  155 (384)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~---~~  155 (384)
                      .+++.             +           ..+.+|  ...|.+++|+++  .++    |+.+++||........   ..
T Consensus       201 ~~~~~-------------~-----------~~~~~h--~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~  252 (435)
T 1p22_A          201 NTGEM-------------L-----------NTLIHH--CEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVL  252 (435)
T ss_dssp             SSCCE-------------E-----------EEECCC--CSCEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEE
T ss_pred             CCCcE-------------E-----------EEEcCC--CCcEEEEEEcCC--EEEEeeCCCcEEEEeCCCCCCceeeeEe
Confidence            87521             1           122233  567889999754  443    8999999997654432   11


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      ..+..  ++.++.+                                       ++..+.....|.....|+.    ....
T Consensus       253 ~~~~~--~v~~~~~---------------------------------------~~~~l~s~~~dg~i~vwd~----~~~~  287 (435)
T 1p22_A          253 VGHRA--AVNVVDF---------------------------------------DDKYIVSASGDRTIKVWNT----STCE  287 (435)
T ss_dssp             CCCSS--CEEEEEE---------------------------------------ETTEEEEEETTSEEEEEET----TTCC
T ss_pred             cCCCC--cEEEEEe---------------------------------------CCCEEEEEeCCCeEEEEEC----CcCc
Confidence            12211  1111222                                       1112222222222222211    1122


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      ......+|...|.+++++  + .++++|+.||.|++||++        .+  ..+..+.+|...|.+++|  ++ .+|++
T Consensus       288 ~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~--------~~--~~~~~~~~h~~~v~~~~~--~~-~~l~s  351 (435)
T 1p22_A          288 FVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIE--------CG--ACLRVLEGHEELVRCIRF--DN-KRIVS  351 (435)
T ss_dssp             EEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETT--------TC--CEEEEECCCSSCEEEEEC--CS-SEEEE
T ss_pred             EEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECC--------CC--CEEEEEeCCcCcEEEEEe--cC-CEEEE
Confidence            355566899999999995  4 489999999999999986        33  356688999999999999  55 69999


Q ss_pred             eeCCCcEEEEecCCCCCCCc--cccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         316 ASDDHTICLWDINATPKENR--VIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      |+.||.|++||++++.....  ...++..+.+|.+.|++++|  ++..+++.+
T Consensus       352 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s  402 (435)
T 1p22_A          352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS  402 (435)
T ss_dssp             EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECC
T ss_pred             EeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEe
Confidence            99999999999976542111  11157778899999999999  566555443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=7.8e-27  Score=224.06  Aligned_cols=238  Identities=13%  Similarity=0.169  Sum_probs=168.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+++ +||+|+.||.|+|||+.+              .+.+..+.+|.+.|++++|+|+++ .|++++.|++|++|
T Consensus        61 ~~~s~~~~-~l~~~~~dg~i~vw~~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw  124 (814)
T 3mkq_A           61 GKFIARKN-WIIVGSDDFRIRVFNYNT--------------GEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLW  124 (814)
T ss_dssp             EEEEGGGT-EEEEEETTSEEEEEETTT--------------CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEE
T ss_pred             EEEeCCCC-EEEEEeCCCeEEEEECCC--------------CcEEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEE
Confidence            47999997 799999999999999986              366777889999999999999999 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec-Cceeee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP-DVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |+.++..                       ....+.+|  ...+.+++|+| ++..++    |+++++|+.........+
T Consensus       125 ~~~~~~~-----------------------~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  179 (814)
T 3mkq_A          125 NWENNWA-----------------------LEQTFEGH--EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL  179 (814)
T ss_dssp             EGGGTSE-----------------------EEEEEECC--SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE
T ss_pred             ECCCCce-----------------------EEEEEcCC--CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE
Confidence            9976310                       11123334  56799999999 777776    899999998765443322


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      ..+. ..+...+.|.|..                                   ++..+.....|.....|.    .....
T Consensus       180 ~~~~-~~~v~~~~~~~~~-----------------------------------~~~~l~~~~~dg~i~~~d----~~~~~  219 (814)
T 3mkq_A          180 TTGQ-ERGVNYVDYYPLP-----------------------------------DKPYMITASDDLTIKIWD----YQTKS  219 (814)
T ss_dssp             ECCC-TTCCCEEEECCST-----------------------------------TCCEEEEECTTSEEEEEE----TTTTE
T ss_pred             ecCC-CCCEEEEEEEECC-----------------------------------CCCEEEEEeCCCEEEEEE----CCCCc
Confidence            2221 1122334443310                                   111111122222222211    11122


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      ......+|...|.+++|+|+++ ++++++.||.|++||+.        .+  ..+..+..|...+.+++|+|++...+++
T Consensus       220 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~--------~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~  288 (814)
T 3mkq_A          220 CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSS--------TY--KVEKTLNVGLERSWCIATHPTGRKNYIA  288 (814)
T ss_dssp             EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETT--------TC--SEEEEECCSSSSEEEEEECTTCGGGEEE
T ss_pred             EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECC--------CC--cEEEEeecCCCcEEEEEEccCCCceEEE
Confidence            3555667999999999999996 99999999999999986        33  3456788899999999999998444466


Q ss_pred             eeCCCcEEEEecCCC
Q psy4577         316 ASDDHTICLWDINAT  330 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~  330 (384)
                      ++.|+.+.+|++...
T Consensus       289 ~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          289 SGFDNGFTVLSLGND  303 (814)
T ss_dssp             EEETTEEEEEECSCC
T ss_pred             EEeCCCEEEEEcCCC
Confidence            666888999998754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=6.9e-27  Score=193.73  Aligned_cols=180  Identities=11%  Similarity=0.070  Sum_probs=121.6

Q ss_pred             CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc---CCCcEEEEEecCCeEEEEEcccCCCccchhh
Q psy4577          17 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP---NEPWVICSVSEDNIMQILSVVCVEPFDDAVE   93 (384)
Q Consensus        17 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~---~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~   93 (384)
                      |+.|++|++...+             +.+..+.+|...++.++|+|   ++. +|+|++.|++|||||+.+++.      
T Consensus       156 d~~V~~~~~s~dG-------------~~~~s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~------  215 (356)
T 2w18_A          156 DQQVEVMTFAEDG-------------GGKENQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQL------  215 (356)
T ss_dssp             TCEEEEEEECTTS-------------CEEEEEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCE------
T ss_pred             CCcEEEEEECCCC-------------ceeeeeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcE------
Confidence            7888888885433             56667778998999999998   567 889999999999999988622      


Q ss_pred             eeeeeeeEEEeccCCcccccceee-eeeccCeeEEEEecCceeee----------------cceeeeeccccccccceee
Q psy4577          94 ERVINEEYKIWKKNTPFLYDLVMT-HALEWPSLTAQWLPDVTRVI----------------NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~----------------d~~v~~w~~~~~~~~~~~~  156 (384)
                             ++.           +.+ |.....+.+++|+|+|..++                |+++++|+..+.....   
T Consensus       216 -------l~t-----------L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~---  274 (356)
T 2w18_A          216 -------LKK-----------MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG---  274 (356)
T ss_dssp             -------EEE-----------EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE---
T ss_pred             -------EEE-----------EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE---
Confidence                   122           222 22234577889999998763                3444444443322210   


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                                                  +..+.+                              
T Consensus       275 --------------------------------------------v~~~~~------------------------------  280 (356)
T 2w18_A          275 --------------------------------------------VMLYCL------------------------------  280 (356)
T ss_dssp             --------------------------------------------EEEECC------------------------------
T ss_pred             --------------------------------------------EEEeec------------------------------
Confidence                                                        000000                              


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceE-EEEeCCCCCCeEEE
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGY-GLSWNPSLNGYLLS  315 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~s~~~~~~l~s  315 (384)
                         ..+|...+.+..++  + .++|+|+.|++|+|||+.        ++.  .+.++.+|...+. +++||||| .+|+|
T Consensus       281 ---p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~--------tGk--~l~tL~gH~~~vvs~vafSPDG-~~LaS  343 (356)
T 2w18_A          281 ---PPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLL--------LGQ--CTALLPPVSDQHWSFVKWSGTD-SHLLA  343 (356)
T ss_dssp             ---CTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETT--------TCS--EEEEECCC--CCCCEEEECSSS-SEEEE
T ss_pred             ---cCCCcceeEccccC--C-CEEEEEcCCCcEEEEECC--------CCc--EEEEecCCCCCeEEEEEECCCC-CEEEE
Confidence               01233333344443  5 489999999999999996        443  4568889987655 68999999 79999


Q ss_pred             eeCCCcEEEEecC
Q psy4577         316 ASDDHTICLWDIN  328 (384)
Q Consensus       316 ~s~Dg~i~iwd~~  328 (384)
                      |+.|++|+|||+.
T Consensus       344 GS~D~TIklWd~~  356 (356)
T 2w18_A          344 GQKDGNIFVYHYS  356 (356)
T ss_dssp             ECTTSCEEEEEEC
T ss_pred             EECCCcEEEecCC
Confidence            9999999999963

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=7.3e-27  Score=205.84  Aligned_cols=250  Identities=14%  Similarity=0.198  Sum_probs=163.7

Q ss_pred             CCCCC-CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp-~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      ++|+| ++. +||+|+.||+|+|||+.+.+...       ...+.+..+.+|...|++++|+|++..+|++++.|++|++
T Consensus        87 ~~~~p~~~~-~l~s~s~dg~v~vw~~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~i  158 (402)
T 2aq5_A           87 IAWCPHNDN-VIASGSEDCTVMVWEIPDGGLVL-------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV  158 (402)
T ss_dssp             EEECTTCTT-EEEEEETTSEEEEEECCTTCCSS-------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEE
T ss_pred             EEeCCCCCC-EEEEEeCCCeEEEEEccCCCCcc-------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEE
Confidence            47999 665 89999999999999998632100       0013456678999999999999998558999999999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccccee
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      ||+.+++             .+..+.         ..+|  ...|.+++|+|++..++    |+.+++||++.......+
T Consensus       159 wd~~~~~-------------~~~~~~---------~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  214 (402)
T 2aq5_A          159 WDVGTGA-------------AVLTLG---------PDVH--PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK  214 (402)
T ss_dssp             EETTTTE-------------EEEEEC---------TTTC--CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EECCCCC-------------ccEEEe---------cCCC--CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee
Confidence            9998751             111110         0223  56789999999998887    899999999876554433


Q ss_pred             -ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         156 -MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       156 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                       ..+.. .....+.|.++..          .+..+.. ......+.++.+.                ..         ..
T Consensus       215 ~~~~~~-~~~~~~~~~~~~~----------~l~~g~~-~~~d~~i~iwd~~----------------~~---------~~  257 (402)
T 2aq5_A          215 DRPHEG-TRPVHAVFVSEGK----------ILTTGFS-RMSERQVALWDTK----------------HL---------EE  257 (402)
T ss_dssp             ECSSCS-SSCCEEEECSTTE----------EEEEEEC-TTCCEEEEEEETT----------------BC---------SS
T ss_pred             ccCCCC-CcceEEEEcCCCc----------EEEEecc-CCCCceEEEEcCc----------------cc---------cC
Confidence             22221 1133445554321          1111100 0012222232221                10         01


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC--CCCceEEEEeCCCCCCe
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG--HQKEGYGLSWNPSLNGY  312 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~s~~~~~~  312 (384)
                      ........|...+.+++|+|++..++++|+.||.|++||+.        .+.. .+..+..  |..+|.+++|+|++ .+
T Consensus       258 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~--------~~~~-~~~~l~~~~~~~~v~~~~~sp~~-~~  327 (402)
T 2aq5_A          258 PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT--------SEAP-FLHYLSMFSSKESQRGMGYMPKR-GL  327 (402)
T ss_dssp             CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC--------SSTT-CEEEEEEECCSSCCSEEEECCGG-GS
T ss_pred             CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec--------CCCc-ceEeecccccCCcccceEEeccc-cc
Confidence            11223345778899999999997444577789999999996        3321 1223333  56899999999998 67


Q ss_pred             EEEeeCCCcEEEEecCCCC
Q psy4577         313 LLSASDDHTICLWDINATP  331 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~~~  331 (384)
                      +++  .|+.+++|++.+++
T Consensus       328 ~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          328 EVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             CGG--GTEEEEEEEEETTE
T ss_pred             cee--cceeEEEEEcCCCc
Confidence            765  46699999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.3e-26  Score=200.90  Aligned_cols=202  Identities=18%  Similarity=0.296  Sum_probs=155.2

Q ss_pred             eEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccC
Q psy4577          44 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWP  123 (384)
Q Consensus        44 ~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (384)
                      ++..+.+|.+.|++++|+|+++ +|++|+.|++|++||+....                      ......+.+|  ...
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~----------------------~~~~~~~~~h--~~~   57 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGET----------------------HKLIDTLTGH--EGP   57 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTE----------------------EEEEEEECCC--SSC
T ss_pred             ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCc----------------------ceeeeEecCC--CCc
Confidence            3456689999999999999999 78899999999999997420                      0011233344  678


Q ss_pred             eeEEEEecC--ceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCC
Q psy4577         124 SLTAQWLPD--VTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQN  197 (384)
Q Consensus       124 v~~~~~~~~--~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (384)
                      |.+++|+|+  +..++    |+.|++|++......                                             
T Consensus        58 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---------------------------------------------   92 (379)
T 3jrp_A           58 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS---------------------------------------------   92 (379)
T ss_dssp             EEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE---------------------------------------------
T ss_pred             EEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee---------------------------------------------
Confidence            999999977  77776    889999987542210                                             


Q ss_pred             eEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCC--CCcEEEEEeCCCcEEEEecC
Q psy4577         198 HLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQ--NPCVIATKTPSSDVLVFDYT  275 (384)
Q Consensus       198 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~s~s~dg~i~iwd~~  275 (384)
                                                            .......|...|.+++|+|+  + .+|++++.|+.|++||++
T Consensus        93 --------------------------------------~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~  133 (379)
T 3jrp_A           93 --------------------------------------QIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFK  133 (379)
T ss_dssp             --------------------------------------EEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECC
T ss_pred             --------------------------------------EeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecC
Confidence                                                  02223357888999999999  7 499999999999999997


Q ss_pred             CCCCCCCCCCCccceeeecCCCCceEEEEeCC-------------CCCCeEEEeeCCCcEEEEecCCCCCCCccccceee
Q psy4577         276 KHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP-------------SLNGYLLSASDDHTICLWDINATPKENRVIDAKTI  342 (384)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-------------~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~  342 (384)
                              .........+.+|...|.+++|+|             ++ .+|++|+.||.|++||++++..   ...+...
T Consensus       134 --------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~  201 (379)
T 3jrp_A          134 --------ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQ---TYVLEST  201 (379)
T ss_dssp             --------TTSCCCEEEEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTT---EEEEEEE
T ss_pred             --------CCCceeeEEecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCc---ceeeEEE
Confidence                    333344557788999999999999             56 7999999999999999987652   1124567


Q ss_pred             eeccCCcEeEEEEecC---CCcccccc
Q psy4577         343 FTGHTAVVELELIERL---TKKADPVC  366 (384)
Q Consensus       343 ~~~h~~~v~~~~~sp~---~~~~~~~c  366 (384)
                      +.+|...|++++|+|+   +..+++.+
T Consensus       202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          202 LEGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             EecccCcEeEEEECCCCCCCCeEEEEe
Confidence            7889999999999999   66655543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.6e-26  Score=194.92  Aligned_cols=202  Identities=9%  Similarity=0.035  Sum_probs=138.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEe-cccccceEEEEEcc--CCCcEEEEEecCCeE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNP--NEPWVICSVSEDNIM   77 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~l~~~~--~~~~~l~s~s~D~~i   77 (384)
                      +.|+|+    +++|+.|++|++|+....-..     ......+.+..+ .+|.+.|.+++|+|  ++. ++++++.|++|
T Consensus        82 ~~~~~~----~~s~s~D~~i~~w~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i  151 (343)
T 3lrv_A           82 GGEHPA----IISRGPCNRLLLLYPGNQITI-----LDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTI  151 (343)
T ss_dssp             TCCCCS----EEEECSTTEEEEEETTTEEEE-----EETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCE
T ss_pred             eeeCCc----eEEecCCCeEEEEEccCceEE-----eecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcE
Confidence            356776    899999999999987631000     000012323333 37778999999999  888 78899999999


Q ss_pred             EEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccc
Q psy4577          78 QILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYD  153 (384)
Q Consensus        78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~  153 (384)
                      ++||+.+++.             +...           ..+ ....+.+++|+|++..++    |+.|++||+++.... 
T Consensus       152 ~~wd~~~~~~-------------~~~~-----------~~~-~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~-  205 (343)
T 3lrv_A          152 GFQSYEDDSQ-------------YIVH-----------SAK-SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA-  205 (343)
T ss_dssp             EEEESSSSCE-------------EEEE-----------CCC-SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC-
T ss_pred             EEEECCCCcE-------------EEEE-----------ecC-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC-
Confidence            9999987521             1111           011 134588999999999887    899999988653221 


Q ss_pred             eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCC
Q psy4577         154 LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG  233 (384)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  233 (384)
                                                                                                      
T Consensus       206 --------------------------------------------------------------------------------  205 (343)
T 3lrv_A          206 --------------------------------------------------------------------------------  205 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeEEEEe-ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceE--EEEeCCCCC
Q psy4577         234 KIEIEIKI-NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGY--GLSWNPSLN  310 (384)
Q Consensus       234 ~~~~~~~~-~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~--~~~~s~~~~  310 (384)
                         ...+. .|.+.|++++|+|++. +|++++ |+.|++||++...       ....+..+..|...+.  +++|+|++ 
T Consensus       206 ---~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g-  272 (343)
T 3lrv_A          206 ---SSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDV-------GTLAYPTYTIPEFKTGTVTYDIDDSG-  272 (343)
T ss_dssp             ---CEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSST-------TCBSSCCCBC-----CCEEEEECTTS-
T ss_pred             ---ccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCC-------cceeecccccccccccceEEEECCCC-
Confidence               01111 3788999999999995 899988 5599999997321       1111222333444444  69999999 


Q ss_pred             CeEEEeeC-CCcEEEEecCCCC
Q psy4577         311 GYLLSASD-DHTICLWDINATP  331 (384)
Q Consensus       311 ~~l~s~s~-Dg~i~iwd~~~~~  331 (384)
                      .+|++++. |+.|++|++....
T Consensus       273 ~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          273 KNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTT
T ss_pred             CEEEEecCCCCcEEEEEEcccc
Confidence            79999998 9999999997765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.1e-25  Score=191.18  Aligned_cols=226  Identities=14%  Similarity=0.062  Sum_probs=165.2

Q ss_pred             CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec
Q psy4577          42 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE  121 (384)
Q Consensus        42 ~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (384)
                      .++...+.+|.+.|++++| |++. +|++++.||.|++||+.+++.             .           ..+..|  .
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~-------------~-----------~~~~~~--~   59 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWL-------------G-----------TVVYTG--Q   59 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEE-------------E-----------EEEEEC--S
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEE-------------E-----------EEeecC--C
Confidence            5788889999999999999 8988 788999999999999966411             1           122233  6


Q ss_pred             cCeeEEEEecCceeee----cceeeeeccccccccc---eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccC
Q psy4577         122 WPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYD---LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD  194 (384)
Q Consensus       122 ~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (384)
                      ..+.+++|+|++..++    ++.+++|++.......   .+..+..  ++.++.+                         
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~-------------------------  112 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG--NVCSLSF-------------------------  112 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS--CEEEEEE-------------------------
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc--CEEEEEe-------------------------
Confidence            6799999999999887    8999999886542211   1111111  1111111                         


Q ss_pred             CCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcC-CCCcEEEEEeCCCcEEEEe
Q psy4577         195 EQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP-QNPCVIATKTPSSDVLVFD  273 (384)
Q Consensus       195 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~s~s~dg~i~iwd  273 (384)
                                    ++..+.....|.....|.      ..........|...+.+++|+| ++ .++++++.||.|++||
T Consensus       113 --------------~~~~l~~~~~d~~i~~~d------~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d  171 (313)
T 3odt_A          113 --------------QDGVVISGSWDKTAKVWK------EGSLVYNLQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQ  171 (313)
T ss_dssp             --------------ETTEEEEEETTSEEEEEE------TTEEEEEEECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEE
T ss_pred             --------------cCCEEEEEeCCCCEEEEc------CCcEEEecccCCCceeEEEEccCCC-CEEEEEECCCCEEEEe
Confidence                          112222222333333321      1223555668999999999999 56 5999999999999999


Q ss_pred             cCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeE
Q psy4577         274 YTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEL  352 (384)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  352 (384)
                      ..            .....+.. |...|.+++|+|++ . |++++.||.|++||+++++       ++..+.+|...|++
T Consensus       172 ~~------------~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~i~~  230 (313)
T 3odt_A          172 ND------------KVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGD-------VLRTYEGHESFVYC  230 (313)
T ss_dssp             TT------------EEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEE
T ss_pred             cC------------ceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchh-------hhhhhhcCCceEEE
Confidence            53            23446666 88999999999997 4 9999999999999999988       99999999999999


Q ss_pred             EEEecCCCccccc
Q psy4577         353 ELIERLTKKADPV  365 (384)
Q Consensus       353 ~~~sp~~~~~~~~  365 (384)
                      ++|+|++. +++.
T Consensus       231 ~~~~~~~~-l~~~  242 (313)
T 3odt_A          231 IKLLPNGD-IVSC  242 (313)
T ss_dssp             EEECTTSC-EEEE
T ss_pred             EEEecCCC-EEEE
Confidence            99999994 4433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=3.3e-25  Score=197.23  Aligned_cols=264  Identities=11%  Similarity=0.037  Sum_probs=179.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEE-----EecccccceEEEEEccCCCcEEEEEecCC
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF-----IHGGHTAKISDFSWNPNEPWVICSVSEDN   75 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~gh~~~V~~l~~~~~~~~~l~s~s~D~   75 (384)
                      ++|+|++ .++++++.|+.|++||+.+.              +...     .+.+|.+.|.+++|+|++. ++++++.|+
T Consensus       128 ~~~s~~~-~~~~~~~~~~~i~~~d~~~g--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~  191 (433)
T 3bws_A          128 VRFIDNT-RLAIPLLEDEGMDVLDINSG--------------QTVRLSPPEKYKKKLGFVETISIPEHNE-LWVSQMQAN  191 (433)
T ss_dssp             CEESSSS-EEEEEBTTSSSEEEEETTTC--------------CEEEECCCHHHHTTCCEEEEEEEGGGTE-EEEEEGGGT
T ss_pred             EEEeCCC-eEEEEeCCCCeEEEEECCCC--------------eEeeecCcccccccCCceeEEEEcCCCE-EEEEECCCC
Confidence            4789944 58899999999999999862              3333     3458999999999999988 888999999


Q ss_pred             eEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccc
Q psy4577          76 IMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPF  150 (384)
Q Consensus        76 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~  150 (384)
                      .|++||+.+++.             +.           .+..|  ...+.+++|+|+++.++     ++.+++||..+..
T Consensus       192 ~v~~~d~~~~~~-------------~~-----------~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~  245 (433)
T 3bws_A          192 AVHVFDLKTLAY-------------KA-----------TVDLT--GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL  245 (433)
T ss_dssp             EEEEEETTTCCE-------------EE-----------EEECS--SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEEECCCceE-------------EE-----------EEcCC--CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence            999999976411             11           11122  45678999999998774     7899999987654


Q ss_pred             ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccC----CCCeEEEEEeecCCCCcccccccccCcCCCCC
Q psy4577         151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSD----EQNHLLIASVQLPNEDAQFDASNYDTDKGDFG  226 (384)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~  226 (384)
                      ....+...   .....+.+.|+..          .+..+.....    ....+.+                ||..     
T Consensus       246 ~~~~~~~~---~~~~~~~~~~~g~----------~l~~~~~~~~~~~~~dg~i~~----------------~d~~-----  291 (433)
T 3bws_A          246 EIRKTDKI---GLPRGLLLSKDGK----------ELYIAQFSASNQESGGGRLGI----------------YSMD-----  291 (433)
T ss_dssp             EEEECCCC---SEEEEEEECTTSS----------EEEEEEEESCTTCSCCEEEEE----------------EETT-----
T ss_pred             EEEEecCC---CCceEEEEcCCCC----------EEEEEECCCCccccCCCeEEE----------------EECC-----
Confidence            43322211   1122333433321          1111111000    0011111                1111     


Q ss_pred             CccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeC
Q psy4577         227 GFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWN  306 (384)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  306 (384)
                           .+.  ......|...+.+++|+|+++.++++++.|+.|++||+.        .+.  .+..+. +...+.+++|+
T Consensus       292 -----~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~--------~~~--~~~~~~-~~~~~~~~~~s  353 (433)
T 3bws_A          292 -----KEK--LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK--------EKK--VQKSIP-VFDKPNTIALS  353 (433)
T ss_dssp             -----TTE--EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETT--------TTE--EEEEEE-CSSSEEEEEEC
T ss_pred             -----CCc--EEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECC--------CCc--EEEEec-CCCCCCeEEEc
Confidence                 111  223345666889999999997678888999999999985        332  233443 66789999999


Q ss_pred             CCCCCeEEEeeC---------------CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         307 PSLNGYLLSASD---------------DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       307 ~~~~~~l~s~s~---------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      |++ .+|++++.               ||.|++||+.+++       .+..+.. ...+.+++|+|+++.+...+.
T Consensus       354 ~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  420 (433)
T 3bws_A          354 PDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT-------VKEFWEA-GNQPTGLDVSPDNRYLVISDF  420 (433)
T ss_dssp             TTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE-------EEEEEEC-SSSEEEEEECTTSCEEEEEET
T ss_pred             CCC-CEEEEEecCCCccccccccccccceEEEEEECCCCc-------EEEEecC-CCCCceEEEcCCCCEEEEEEC
Confidence            998 67777776               5799999999887       7777765 457999999999998876654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=4.1e-26  Score=200.07  Aligned_cols=227  Identities=8%  Similarity=0.084  Sum_probs=134.4

Q ss_pred             CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577           6 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV   85 (384)
Q Consensus         6 ~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~   85 (384)
                      +++ +||+||.|++|+|||+.+              ......+.+|...|.+++|+|++..+|++++.|++|++||+.++
T Consensus       155 d~~-~las~s~D~tv~~Wd~~~--------------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~  219 (393)
T 4gq1_A          155 AEQ-VIASVGDDCTLIIWRLTD--------------EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN  219 (393)
T ss_dssp             EEE-EEEEEETTSEEEEEEEET--------------TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred             CCC-EEEEEECCCeEEEEECCC--------------CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence            564 899999999999999976              24555667888899999999998768999999999999999876


Q ss_pred             CCccchhheee--eeeeEEEeccCCcccccceeeeeeccCeeEEEEe-cCceeee----cceeeeeccccccccceeecc
Q psy4577          86 EPFDDAVEERV--INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWL-PDVTRVI----NEEYKIWKKNTPFLYDLVMTH  158 (384)
Q Consensus        86 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~----d~~v~~w~~~~~~~~~~~~~~  158 (384)
                      +..........  ....... ............+|  ...+.++.|+ |++..++    |+++++||+........+..+
T Consensus       220 ~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~--~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~  296 (393)
T 4gq1_A          220 LSAEENSQTELVKNPWLLTL-NTLPLVNTCHSSGI--ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS  296 (393)
T ss_dssp             C----------CSCCCSEEE-ESGGGC------CC--SSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------
T ss_pred             cccccccccCCcccceEEec-ccccceeeeecccc--cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee
Confidence            43221111100  0000000 00000000112233  5678899987 7888877    899999998654432221111


Q ss_pred             cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEE
Q psy4577         159 ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE  238 (384)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  238 (384)
                      ...                                       +..+.+.++                           ..
T Consensus       297 ~~~---------------------------------------~~~~~~~~~---------------------------~~  310 (393)
T 4gq1_A          297 TMK---------------------------------------LGPKNLLPN---------------------------VQ  310 (393)
T ss_dssp             ----------------------------------------------CCSCS---------------------------EE
T ss_pred             cCc---------------------------------------cccEEEccc---------------------------cc
Confidence            100                                       111111000                           11


Q ss_pred             EEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC
Q psy4577         239 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       239 ~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      ....+...+..+.+.+.+..++++|+.||.|++||+.        .+.  ....+.+|..+|++++||||| ++||+++.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~--------~~~--~~~~~~~~~~~V~svafspdG-~~LA~as~  379 (393)
T 4gq1_A          311 GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTY--------EKD--SNSIPIQLGMPIVDFCWHQDG-SHLAIATE  379 (393)
T ss_dssp             EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETT--------CTT--CCEEEEECSSCEEEEEECTTS-SEEEEEES
T ss_pred             cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECC--------CCc--EEEEecCCCCcEEEEEEcCCC-CEEEEEeC
Confidence            1111222233333333444577888999999999986        332  344667888999999999999 79999987


Q ss_pred             CCcEEEEecC
Q psy4577         319 DHTICLWDIN  328 (384)
Q Consensus       319 Dg~i~iwd~~  328 (384)
                      || +.+|.+.
T Consensus       380 ~G-v~lvrL~  388 (393)
T 4gq1_A          380 GS-VLLTRLM  388 (393)
T ss_dssp             SE-EEEEEEG
T ss_pred             CC-eEEEEEe
Confidence            65 5566543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=2.9e-24  Score=188.51  Aligned_cols=251  Identities=12%  Similarity=0.044  Sum_probs=171.9

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCc
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPF   88 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~   88 (384)
                      .++++++.|+.|++||+.+              .+++..+.+|. .+.+++|+|+++.++++++.|++|++||+.+++. 
T Consensus         3 ~l~vs~~~d~~v~v~d~~~--------------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-   66 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTS--------------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-   66 (391)
T ss_dssp             EEEEEETTTTEEEEEETTT--------------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-
T ss_pred             EEEEEcCCCCEEEEEECCC--------------CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-
Confidence            4789999999999999986              36667777775 5899999999996667888999999999977511 


Q ss_pred             cchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeeccccccc
Q psy4577          89 DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWP  163 (384)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~  163 (384)
                                  +..           +..   ...+.+++|+|+++.++     ++.+++||..+......+..+.   .
T Consensus        67 ------------~~~-----------~~~---~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---~  117 (391)
T 1l0q_A           67 ------------IAT-----------VPA---GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---S  117 (391)
T ss_dssp             ------------EEE-----------EEC---SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---S
T ss_pred             ------------EEE-----------EEC---CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---C
Confidence                        111           111   23688999999999775     6899999998765543332211   1


Q ss_pred             ceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccc-cccccCcCCCCCCccCCCCceeEEEEee
Q psy4577         164 SLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFD-ASNYDTDKGDFGGFGSVSGKIEIEIKIN  242 (384)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~  242 (384)
                      ...+.|.++.                                     ..+. ....+.....|..   ..+.. .... .
T Consensus       118 ~~~~~~s~dg-------------------------------------~~l~~~~~~~~~v~~~d~---~~~~~-~~~~-~  155 (391)
T 1l0q_A          118 PLGLALSPDG-------------------------------------KKLYVTNNGDKTVSVINT---VTKAV-INTV-S  155 (391)
T ss_dssp             EEEEEECTTS-------------------------------------SEEEEEETTTTEEEEEET---TTTEE-EEEE-E
T ss_pred             cceEEECCCC-------------------------------------CEEEEEeCCCCEEEEEEC---CCCcE-EEEE-e
Confidence            2233343332                                     2221 1111111111111   01111 2222 3


Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee---CC
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS---DD  319 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s---~D  319 (384)
                      +...+.+++|+|+++.++++++.|+.|++||++        .+.  ....+. +...+.+++|+|++ .+|++++   .|
T Consensus       156 ~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~--------~~~--~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~  223 (391)
T 1l0q_A          156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV--------TNS--VIDTVK-VEAAPSGIAVNPEG-TKAYVTNVDKYF  223 (391)
T ss_dssp             CCSSEEEEEECTTSSEEEEEETTTTEEEEEETT--------TTE--EEEEEE-CSSEEEEEEECTTS-SEEEEEEECSSC
T ss_pred             cCCCcceEEECCCCCEEEEEeCCCCEEEEEECC--------CCe--EEEEEe-cCCCccceEECCCC-CEEEEEecCcCC
Confidence            345679999999997566888899999999986        332  233333 55679999999998 6788777   68


Q ss_pred             CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         320 HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       320 g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      +.|++||+++++       .+..+..|. .+.+++|+|+++.+...+
T Consensus       224 ~~v~~~d~~~~~-------~~~~~~~~~-~~~~~~~s~dg~~l~~s~  262 (391)
T 1l0q_A          224 NTVSMIDTGTNK-------ITARIPVGP-DPAGIAVTPDGKKVYVAL  262 (391)
T ss_dssp             CEEEEEETTTTE-------EEEEEECCS-SEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCe-------EEEEEecCC-CccEEEEccCCCEEEEEc
Confidence            999999999887       778887765 478999999999775443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=1.3e-25  Score=200.75  Aligned_cols=279  Identities=10%  Similarity=0.084  Sum_probs=169.6

Q ss_pred             ccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec--------
Q psy4577          50 GHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE--------  121 (384)
Q Consensus        50 gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  121 (384)
                      .|.+.|++++|+|++. +||+|+.||.|++||+..++.....             ......+...+.+|..+        
T Consensus        26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~h~~~~~~~~~~~   91 (447)
T 3dw8_B           26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSH-------------SRGEYNVYSTFQSHEPEFDYLKSLE   91 (447)
T ss_dssp             CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CC-------------CCCCEEEEEEEECCCCEEEGGGTEE
T ss_pred             cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcc-------------cccceeEeccccccccccccccccc
Confidence            3678999999999999 8899999999999999875211000             00000012233445322        


Q ss_pred             --cCeeEEEEecCc--eeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccce---eEEEEee
Q psy4577         122 --WPSLTAQWLPDV--TRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSI---HRLILGT  190 (384)
Q Consensus       122 --~~v~~~~~~~~~--~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  190 (384)
                        ..|.+++|+|++  ..++    |++|++|++..................  ..   ..........+.   .......
T Consensus        92 ~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~--~~---~~~~~~~~~~~~~~~~~~~~~~  166 (447)
T 3dw8_B           92 IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGR--YR---DPTTVTTLRVPVFRPMDLMVEA  166 (447)
T ss_dssp             ECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC-------------CCCCCSCCCCEEEEEEEEEEE
T ss_pred             ccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCcccc--cc---CcccccceEeccccchheeeec
Confidence              779999999998  5565    999999998654321100000000000  00   000000000000   0000000


Q ss_pred             e---ccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEE-------EEeecCCceEEEEEcCCCCcEE
Q psy4577         191 H---TSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE-------IKINHEGEVNRARYMPQNPCVI  260 (384)
Q Consensus       191 ~---~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~v~~~p~~~~~l  260 (384)
                      .   .....+...+..+.+++++..+... .|.....|....   ......       ....|...|++++|+|++..+|
T Consensus       167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l  242 (447)
T 3dw8_B          167 SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEI---TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTF  242 (447)
T ss_dssp             EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTE---EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE
T ss_pred             cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCC---CCceeeeeecccccccccCcceEEEEECCCCCcEE
Confidence            0   0011222346677777776666655 666666654311   111111       1347899999999999984599


Q ss_pred             EEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC------------ceEEEEeCCCCCCeEEEeeCCCcEEEEecC
Q psy4577         261 ATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK------------EGYGLSWNPSLNGYLLSASDDHTICLWDIN  328 (384)
Q Consensus       261 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~------------~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~  328 (384)
                      ++|+.||.|++||++....      .......+.+|..            .|.+++|+|++ .+|++++. +.|++||++
T Consensus       243 ~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          243 VYSSSKGTIRLCDMRASAL------CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             EEEETTSCEEEEETTTCSS------SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETT
T ss_pred             EEEeCCCeEEEEECcCCcc------ccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCC
Confidence            9999999999999973210      1112456777765            89999999998 79999999 999999999


Q ss_pred             C-CCCCCccccceeeeeccCCc---------------EeEEEEecCCCcccccc
Q psy4577         329 A-TPKENRVIDAKTIFTGHTAV---------------VELELIERLTKKADPVC  366 (384)
Q Consensus       329 ~-~~~~~~~~~~~~~~~~h~~~---------------v~~~~~sp~~~~~~~~c  366 (384)
                      + ++       ++..+.+|...               +..++|+|+++.+++.+
T Consensus       315 ~~~~-------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s  361 (447)
T 3dw8_B          315 MENR-------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS  361 (447)
T ss_dssp             CCSS-------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC
T ss_pred             CCcc-------ccceeeccccccccccccccccccccceEEEECCCCCEEEEec
Confidence            7 66       88888888642               33499999999876553

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=2.2e-25  Score=191.91  Aligned_cols=237  Identities=11%  Similarity=0.015  Sum_probs=160.5

Q ss_pred             EecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeE
Q psy4577          47 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLT  126 (384)
Q Consensus        47 ~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  126 (384)
                      ...+|.+.|++++|+|++. +|++++.|+.|++|++..++..                   .  ....+.+|  ...|.+
T Consensus         6 ~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~-------------------~--~~~~~~~~--~~~v~~   61 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKN-------------------V--DLLQSLRY--KHPLLC   61 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTE-------------------E--EEEEEEEC--SSCEEE
T ss_pred             cccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcc-------------------c--cceeeeec--CCceEE
Confidence            3468999999999999999 7889999999999999774100                   0  00112233  678999


Q ss_pred             EEEecCce-eee----cceeeeecc-ccccccceeec--ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577         127 AQWLPDVT-RVI----NEEYKIWKK-NTPFLYDLVMT--HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH  198 (384)
Q Consensus       127 ~~~~~~~~-~~~----d~~v~~w~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (384)
                      ++|+|+++ .++    ++.+++|++ ....... +..  +.  .++..+.|.+                           
T Consensus        62 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~--~~v~~l~~~~---------------------------  111 (342)
T 1yfq_A           62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA-LTNNEAN--LGICRICKYG---------------------------  111 (342)
T ss_dssp             EEEEESSSEEEEEEETTSCEEEECSSSSSSEEE-CBSCCCC--SCEEEEEEET---------------------------
T ss_pred             EEECCCCCcEEEEEcCCCeEEEEEeccCCceEe-ccccCCC--CceEEEEeCC---------------------------
Confidence            99999999 776    899999998 7654421 222  21  1223344433                           


Q ss_pred             EEEEEeecCCCCcccccccccCcCCCCCCccCCCCc----eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEec
Q psy4577         199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK----IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDY  274 (384)
Q Consensus       199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~  274 (384)
                                 +..+.....|.....|.........    ........|...|.+++|+|++   +++++.|+.|++||+
T Consensus       112 -----------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~  177 (342)
T 1yfq_A          112 -----------DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR---LIVGMNNSQVQWFRL  177 (342)
T ss_dssp             -----------TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE---EEEEESTTEEEEEES
T ss_pred             -----------CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc---EEEEeCCCeEEEEEC
Confidence                       1222222222222222110000000    0000112378899999999865   888899999999999


Q ss_pred             CCCCCCCCCCCCccceeeecCCCCceEEEEeCC-CCCCeEEEeeCCCcEEEEecCCC------CCCCccccceeeeeccC
Q psy4577         275 TKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP-SLNGYLLSASDDHTICLWDINAT------PKENRVIDAKTIFTGHT  347 (384)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~~l~s~s~Dg~i~iwd~~~~------~~~~~~~~~~~~~~~h~  347 (384)
                      +..       ...........|...|.+++|+| ++ .+|++++.||.|++|+++..      +       ....+.+|.
T Consensus       178 ~~~-------~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~-------~~~~~~~~~  242 (342)
T 1yfq_A          178 PLC-------EDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSS-------KRFAFRCHR  242 (342)
T ss_dssp             SCC-------TTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCT-------TCEEEECCC
T ss_pred             Ccc-------ccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccc-------cceeeeccc
Confidence            720       22223335567888999999999 98 79999999999999999876      4       777788876


Q ss_pred             C---------cEeEEEEecCCCcccccc
Q psy4577         348 A---------VVELELIERLTKKADPVC  366 (384)
Q Consensus       348 ~---------~v~~~~~sp~~~~~~~~c  366 (384)
                      .         .|++++|+|+++.+++.+
T Consensus       243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~  270 (342)
T 1yfq_A          243 LNLKDTNLAYPVNSIEFSPRHKFLYTAG  270 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEE
T ss_pred             ccccccccceeEEEEEEcCCCCEEEEec
Confidence            5         999999999999877654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.94  E-value=6.2e-25  Score=193.69  Aligned_cols=218  Identities=17%  Similarity=0.229  Sum_probs=153.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCc--EEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW--VICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~--~l~s~s~D~~i~   78 (384)
                      ++|+|++..+|++++.|+.|++||+.+              .+....+. |...+.+++|+|.+..  ++++++.|+.|+
T Consensus       105 ~~~~~~~~~~l~s~~~d~~i~iwd~~~--------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (408)
T 4a11_B          105 VQWYPHDTGMFTSSSFDKTLKVWDTNT--------------LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQ  169 (408)
T ss_dssp             EEECTTCTTCEEEEETTSEEEEEETTT--------------TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred             EEEccCCCcEEEEEeCCCeEEEeeCCC--------------Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence            468995555899999999999999986              24444443 6778999999985432  788999999999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCcee-ee----cceeeeecccccccc-
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR-VI----NEEYKIWKKNTPFLY-  152 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~----d~~v~~w~~~~~~~~-  152 (384)
                      +||+..++..                        ..+.+|  ...|.+++|+|++.. ++    |+.+++||++..... 
T Consensus       170 ~~d~~~~~~~------------------------~~~~~~--~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~  223 (408)
T 4a11_B          170 LCDLKSGSCS------------------------HILQGH--RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL  223 (408)
T ss_dssp             EEESSSSCCC------------------------EEECCC--CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCS
T ss_pred             EEeCCCccee------------------------eeecCC--CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccc
Confidence            9999775211                        122233  567899999999985 44    899999998654321 


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                      ..+......                                                            .          
T Consensus       224 ~~~~~~~~~------------------------------------------------------------~----------  233 (408)
T 4a11_B          224 ITLDQHNGK------------------------------------------------------------K----------  233 (408)
T ss_dssp             EECCTTTTC------------------------------------------------------------S----------
T ss_pred             ccccccccc------------------------------------------------------------c----------
Confidence            100000000                                                            0          


Q ss_pred             CceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCC----------------------------
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPN----------------------------  284 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------------------------  284 (384)
                      ..........|...|.+++|+|++. +|++++.||.|++||++.........                            
T Consensus       234 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
T 4a11_B          234 SQAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY  312 (408)
T ss_dssp             CCCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred             ceeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec
Confidence            0000011125778899999999885 88899999999999987432110000                            


Q ss_pred             ---------CCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577         285 ---------GECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       285 ---------~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                               ....++..+.+|...|++++|+|++ .+|++|+.||.|++||+++.+
T Consensus       313 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          313 GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             TTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEEECC--
T ss_pred             CCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCCCCC
Confidence                     1123456778899999999999998 799999999999999999887

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=1.7e-24  Score=179.51  Aligned_cols=242  Identities=8%  Similarity=0.008  Sum_probs=148.8

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccccc-------------------------ceEEEEEccC-
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-------------------------KISDFSWNPN-   63 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~-------------------------~V~~l~~~~~-   63 (384)
                      .+++++ ..+|++|+....           ...+.++++.+|..                         .|.+|+|+|+ 
T Consensus        56 ~~~~~~-~~~v~lw~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~  123 (356)
T 2w18_A           56 CIITAC-EDVVSLWKALDA-----------WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDD  123 (356)
T ss_dssp             EEEEEE-SSEEEEEEESSS-----------SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC----
T ss_pred             EEEEec-cceEEEcccCCC-----------ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCc
Confidence            566666 568999999862           11255666666654                         4566666667 


Q ss_pred             ---CCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCC-cccccceeeeeeccCeeEEEEec---Cceee
Q psy4577          64 ---EPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNT-PFLYDLVMTHALEWPSLTAQWLP---DVTRV  136 (384)
Q Consensus        64 ---~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~~  136 (384)
                         ++ .+++++.+  +++|++.+++.+....  ..-++.+++|.... ......+.+|  ...+..++|+|   ++..+
T Consensus       124 ~~~~~-~l~s~g~~--~~v~~l~~g~lv~ss~--~g~d~~V~~~~~s~dG~~~~s~~~~--~~~v~~l~fs~~~g~~~~L  196 (356)
T 2w18_A          124 ESEKQ-VLLKSGNI--KAVLGLTKRRLVSSSG--TLSDQQVEVMTFAEDGGGKENQFLM--PPEETILTFAEVQGMQEAL  196 (356)
T ss_dssp             --CCE-EEEEEEEE--EEEEEETTTEEEEEES--SSTTCEEEEEEECTTSCEEEEEEEC--CCSSCEEEEEEEETSTTEE
T ss_pred             ccccc-EEEeCCCe--EEEEecCCCcEEEecc--cCCCCcEEEEEECCCCceeeeeccC--CCceeeEEeeccCCCCceE
Confidence               66 56666643  7788886654322211  00246677777622 3233444556  44566777777   55677


Q ss_pred             e----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcc
Q psy4577         137 I----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQ  212 (384)
Q Consensus       137 ~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  212 (384)
                      +    |++|++||..++.....+..+.                                                     
T Consensus       197 aSgS~D~TIkIWDl~TGk~l~tL~g~~-----------------------------------------------------  223 (356)
T 2w18_A          197 LGTTIMNNIVIWNLKTGQLLKKMHIDD-----------------------------------------------------  223 (356)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCC-----------------------------------------------------
T ss_pred             EEecCCCcEEEEECCCCcEEEEEcCCC-----------------------------------------------------
Confidence            6    9999999997765433322110                                                     


Q ss_pred             cccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCc-----------EEEEEeCCCcEEEEecCCCCCCC
Q psy4577         213 FDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPC-----------VIATKTPSSDVLVFDYTKHPSKP  281 (384)
Q Consensus       213 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-----------~l~s~s~dg~i~iwd~~~~~~~~  281 (384)
                                                   .+...+.+++|+|++..           .+++|+.|++|++||..      
T Consensus       224 -----------------------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~------  268 (356)
T 2w18_A          224 -----------------------------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK------  268 (356)
T ss_dssp             --------------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT------
T ss_pred             -----------------------------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC------
Confidence                                         01123555666666631           24788999999999986      


Q ss_pred             CCCCCccceee---ecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEe-EEEEec
Q psy4577         282 DPNGECHPDLR---LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE-LELIER  357 (384)
Q Consensus       282 ~~~~~~~~~~~---~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~sp  357 (384)
                        .+.......   ..+|...+.+..++  + .++|+|+.|++|+|||+.+++       ++.++.+|...+. .++|||
T Consensus       269 --tgk~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk-------~l~tL~gH~~~vvs~vafSP  336 (356)
T 2w18_A          269 --TTLSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQ-------CTALLPPVSDQHWSFVKWSG  336 (356)
T ss_dssp             --TTEEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCS-------EEEEECCC--CCCCEEEECS
T ss_pred             --CCEEEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCc-------EEEEecCCCCCeEEEEEECC
Confidence              443322211   14777666555554  6 699999999999999999998       9999999987654 699999


Q ss_pred             CCCcccccccccc
Q psy4577         358 LTKKADPVCTLEK  370 (384)
Q Consensus       358 ~~~~~~~~c~~~~  370 (384)
                      +|+.+++.+....
T Consensus       337 DG~~LaSGS~D~T  349 (356)
T 2w18_A          337 TDSHLLAGQKDGN  349 (356)
T ss_dssp             SSSEEEEECTTSC
T ss_pred             CCCEEEEEECCCc
Confidence            9999887765443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.93  E-value=1.1e-25  Score=199.79  Aligned_cols=229  Identities=86%  Similarity=1.366  Sum_probs=167.4

Q ss_pred             cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccc
Q psy4577         138 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASN  217 (384)
Q Consensus       138 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  217 (384)
                      +..+++|+.+.+.+|+++..+...||+++++|.|+........+...++++|+++....+.+.+..+.++..........
T Consensus        22 ~~~~~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~  101 (430)
T 2xyi_A           22 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSH  101 (430)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC----------
T ss_pred             hHHHhhHhhCChHHHHHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCcccccccc
Confidence            55677888888888999999999999999999999876677778888999999988788999999988764433333344


Q ss_pred             ccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC
Q psy4577         218 YDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ  297 (384)
Q Consensus       218 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~  297 (384)
                      +|.+......+....+++.......|.+.|++++|+|++..+||+++.||.|++||+..........+...++..+.+|.
T Consensus       102 ~d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~  181 (430)
T 2xyi_A          102 YDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ  181 (430)
T ss_dssp             ----------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS
T ss_pred             ccccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC
Confidence            55444444344445566767778899999999999998557999999999999999975433322223456777899999


Q ss_pred             CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       298 ~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      ..|++++|+|++..+|++|+.||+|++||+..+......+.+...+.+|...|.+++|+|++.....+|
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~  250 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV  250 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence            999999999998449999999999999999986533333344677788999999999999766555444

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.5e-25  Score=209.82  Aligned_cols=200  Identities=18%  Similarity=0.292  Sum_probs=152.8

Q ss_pred             EEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCee
Q psy4577          46 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSL  125 (384)
Q Consensus        46 ~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  125 (384)
                      .++.||.+.|++++|+|+++ +|++|+.||+|++||+....                      ......+.+|  ..+|.
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~----------------------~~~~~~l~~h--~~~V~   57 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGET----------------------HKLIDTLTGH--EGPVW   57 (753)
T ss_dssp             -----CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTE----------------------EEEEEEECCC--SSCEE
T ss_pred             eecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCC----------------------CccceeccCC--cCceE
Confidence            45679999999999999999 77899999999999987420                      0011233445  67899


Q ss_pred             EEEEecC--ceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeE
Q psy4577         126 TAQWLPD--VTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHL  199 (384)
Q Consensus       126 ~~~~~~~--~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (384)
                      +++|+|+  +..++    |+.|++|++.+...                                                
T Consensus        58 ~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~------------------------------------------------   89 (753)
T 3jro_A           58 RVDWAHPKFGTILASCSYDGKVLIWKEENGRW------------------------------------------------   89 (753)
T ss_dssp             EEEECCTTSCSEEEEEETTSCEEEEEEETTEE------------------------------------------------
T ss_pred             EEEecCCCCCCEEEEEeCCCeEEEEECCCCcc------------------------------------------------
Confidence            9999988  77776    89999998644211                                                


Q ss_pred             EEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCC--CCcEEEEEeCCCcEEEEecCCC
Q psy4577         200 LIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQ--NPCVIATKTPSSDVLVFDYTKH  277 (384)
Q Consensus       200 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~s~s~dg~i~iwd~~~~  277 (384)
                                                         ........|...|.+++|+|+  + .++++|+.||.|++||++  
T Consensus        90 -----------------------------------~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~--  131 (753)
T 3jro_A           90 -----------------------------------SQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFK--  131 (753)
T ss_dssp             -----------------------------------EEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECC--
T ss_pred             -----------------------------------cccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEee--
Confidence                                               002233468889999999998  7 499999999999999997  


Q ss_pred             CCCCCCCCCccceeeecCCCCceEEEEeCC-------------CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee
Q psy4577         278 PSKPDPNGECHPDLRLRGHQKEGYGLSWNP-------------SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT  344 (384)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-------------~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  344 (384)
                            .+.......+.+|...|.+++|+|             ++ .+|++|+.||+|++||++++..   ...+...+.
T Consensus       132 ------~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~~~  201 (753)
T 3jro_A          132 ------ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQ---TYVLESTLE  201 (753)
T ss_dssp             ------SSSCCCCEEEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTT---EEEEEEEEC
T ss_pred             ------cCCCcceeEeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcc---cceeeeeec
Confidence                  333344557789999999999999             46 7999999999999999988742   112667788


Q ss_pred             ccCCcEeEEEEecC---CCcccccc
Q psy4577         345 GHTAVVELELIERL---TKKADPVC  366 (384)
Q Consensus       345 ~h~~~v~~~~~sp~---~~~~~~~c  366 (384)
                      +|...|++++|+|+   +..+++.+
T Consensus       202 ~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          202 GHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             CCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             CCCCcEEEEEeccCCCCCCEEEEEe
Confidence            99999999999999   66655543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.93  E-value=1.2e-24  Score=193.66  Aligned_cols=231  Identities=17%  Similarity=0.240  Sum_probs=154.3

Q ss_pred             CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577           6 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV   85 (384)
Q Consensus         6 ~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~   85 (384)
                      ++. +||+|+.||+|++||+.+              .+.+..+.+|...|.+++|++  . ++++|+.|++|++||+..+
T Consensus       182 ~~~-~l~sg~~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~  243 (435)
T 1p22_A          182 DER-VIITGSSDSTVRVWDVNT--------------GEMLNTLIHHCEAVLHLRFNN--G-MMVTCSKDRSIAVWDMASP  243 (435)
T ss_dssp             CSS-EEEEEETTSCEEEEESSS--------------CCEEEEECCCCSCEEEEECCT--T-EEEEEETTSCEEEEECSSS
T ss_pred             CCC-EEEEEcCCCeEEEEECCC--------------CcEEEEEcCCCCcEEEEEEcC--C-EEEEeeCCCcEEEEeCCCC
Confidence            554 899999999999999986              367788889999999999974  3 7889999999999999775


Q ss_pred             CCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeeccccc
Q psy4577          86 EPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALE  161 (384)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~  161 (384)
                      +..                     .....+.+|  ...|.+++|  ++..++    |+.+++||..+......+..+...
T Consensus       244 ~~~---------------------~~~~~~~~~--~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  298 (435)
T 1p22_A          244 TDI---------------------TLRRVLVGH--RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG  298 (435)
T ss_dssp             SCC---------------------EEEEEECCC--SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CCc---------------------eeeeEecCC--CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCc
Confidence            221                     001123344  567888888  555555    899999999876554444333221


Q ss_pred             ccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEe
Q psy4577         162 WPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKI  241 (384)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  241 (384)
                        +.++.+.                                       +..+.+...|.....|+.    ..........
T Consensus       299 --v~~~~~~---------------------------------------~~~l~~g~~dg~i~iwd~----~~~~~~~~~~  333 (435)
T 1p22_A          299 --IACLQYR---------------------------------------DRLVVSGSSDNTIRLWDI----ECGACLRVLE  333 (435)
T ss_dssp             --EEEEEEE---------------------------------------TTEEEEEETTSCEEEEET----TTCCEEEEEC
T ss_pred             --EEEEEeC---------------------------------------CCEEEEEeCCCeEEEEEC----CCCCEEEEEe
Confidence              1112110                                       111122222222222211    1112355566


Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      +|...|.+++|  ++ .+|++|+.||.|++||++....... ......+..+.+|.+.|++++|  ++ .+|++|+.||+
T Consensus       334 ~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~Dg~  406 (435)
T 1p22_A          334 GHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRA-PAGTLCLRTLVEHSGRVFRLQF--DE-FQIVSSSHDDT  406 (435)
T ss_dssp             CCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTS-CTTTTEEEEECCCSSCCCCEEE--CS-SCEEECCSSSE
T ss_pred             CCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCCCccc-cccchheeeccCCCCCeEEEEe--CC-CEEEEEeCCCE
Confidence            89999999999  55 4899999999999999863211100 0111246678899999999999  65 68999999999


Q ss_pred             EEEEecCCCC
Q psy4577         322 ICLWDINATP  331 (384)
Q Consensus       322 i~iwd~~~~~  331 (384)
                      |++||+.+..
T Consensus       407 i~iwd~~~~~  416 (435)
T 1p22_A          407 ILIWDFLNDP  416 (435)
T ss_dssp             EEEEC-----
T ss_pred             EEEEECCCCC
Confidence            9999998875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=2.1e-23  Score=183.02  Aligned_cols=253  Identities=9%  Similarity=0.048  Sum_probs=167.2

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+++.++++++.|++|++||+.+              .+.+..+..|. .|.+++|+|+++.++++++.|+.|++|
T Consensus        37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~--------------~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~  101 (391)
T 1l0q_A           37 AVISPDGTKVYVANAHSNDVSIIDTAT--------------NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVI  101 (391)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETTT--------------TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEECCCCCEEEEECCCCCeEEEEECCC--------------CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEE
Confidence            479999986568888999999999976              35666666555 899999999999666677788999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~  155 (384)
                      |+.+++.             +...           ..   ...+.+++|+|+++.++     ++.+++||..+......+
T Consensus       102 d~~~~~~-------------~~~~-----------~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  154 (391)
T 1l0q_A          102 DTTSNTV-------------AGTV-----------KT---GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (391)
T ss_dssp             ETTTTEE-------------EEEE-----------EC---SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ECCCCeE-------------EEEE-----------eC---CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            9987511             1111           11   23567999999998774     899999998776554333


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccc-ccccCcCCCCCCccCCCCc
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDA-SNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~  234 (384)
                      ..+.   ....+.|.++.                                     ..+.+ ...+.....|+.    ...
T Consensus       155 ~~~~---~~~~~~~~~dg-------------------------------------~~l~~~~~~~~~v~~~d~----~~~  190 (391)
T 1l0q_A          155 SVGR---SPKGIAVTPDG-------------------------------------TKVYVANFDSMSISVIDT----VTN  190 (391)
T ss_dssp             ECCS---SEEEEEECTTS-------------------------------------SEEEEEETTTTEEEEEET----TTT
T ss_pred             ecCC---CcceEEECCCC-------------------------------------CEEEEEeCCCCEEEEEEC----CCC
Confidence            2221   11233343332                                     11111 111111111110    011


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEEEEe---CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIATKT---PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG  311 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~  311 (384)
                       .......+...+.+++|+|+++ ++++++   .++.|++||++        .+  +.+..+..|. .+.+++|+|++ +
T Consensus       191 -~~~~~~~~~~~~~~~~~~~~g~-~l~~~~~~~~~~~v~~~d~~--------~~--~~~~~~~~~~-~~~~~~~s~dg-~  256 (391)
T 1l0q_A          191 -SVIDTVKVEAAPSGIAVNPEGT-KAYVTNVDKYFNTVSMIDTG--------TN--KITARIPVGP-DPAGIAVTPDG-K  256 (391)
T ss_dssp             -EEEEEEECSSEEEEEEECTTSS-EEEEEEECSSCCEEEEEETT--------TT--EEEEEEECCS-SEEEEEECTTS-S
T ss_pred             -eEEEEEecCCCccceEECCCCC-EEEEEecCcCCCcEEEEECC--------CC--eEEEEEecCC-CccEEEEccCC-C
Confidence             1223345677899999999996 566655   78999999986        33  2345666655 47899999998 5


Q ss_pred             eE-EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEe---EEEEecCCC
Q psy4577         312 YL-LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE---LELIERLTK  360 (384)
Q Consensus       312 ~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~---~~~~sp~~~  360 (384)
                      +| ++++.|+.|++||+.+++       .+..+..|..+..   .+.+.|++.
T Consensus       257 ~l~~s~~~d~~v~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  302 (391)
T 1l0q_A          257 KVYVALSFXNTVSVIDTATNT-------ITATMAVGKNPYASGQFIGSIPVQP  302 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTE-------EEEEEECSSSEECCSSCEEECSSCC
T ss_pred             EEEEEcCCCCEEEEEECCCCc-------EEEEEECCcCCCccceeeecccccc
Confidence            55 788899999999999987       7777766655432   244555443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.93  E-value=1e-23  Score=183.15  Aligned_cols=241  Identities=14%  Similarity=0.129  Sum_probs=153.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEE--ccCCCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW--NPNEPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~--~~~~~~~l~s~s~D~~i~   78 (384)
                      ++|+|++. +||+|+.||.|++||+.+              .+.. .+.+|...|++++|  +|++. +|++++.|++|+
T Consensus        92 ~~~~~~~~-~l~s~~~dg~v~iwd~~~--------------~~~~-~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~  154 (368)
T 3mmy_A           92 VCWSDDGS-KVFTASCDKTAKMWDLSS--------------NQAI-QIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLK  154 (368)
T ss_dssp             EEECTTSS-EEEEEETTSEEEEEETTT--------------TEEE-EEEECSSCEEEEEEEECSSCE-EEEEEETTSEEE
T ss_pred             EEECcCCC-EEEEEcCCCcEEEEEcCC--------------CCce-eeccccCceEEEEEEeCCCCC-EEEEccCCCcEE
Confidence            47999997 799999999999999986              2333 35679999999999  88888 788999999999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee--cceeeeeccccccccceee
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI--NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--d~~v~~w~~~~~~~~~~~~  156 (384)
                      +||+.+++..             ..+.           .   ...+.++.+.++...+.  ++.+++|+...........
T Consensus       155 vwd~~~~~~~-------------~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  207 (368)
T 3mmy_A          155 FWDTRSSNPM-------------MVLQ-----------L---PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRI  207 (368)
T ss_dssp             EECSSCSSCS-------------EEEE-----------C---SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEEC
T ss_pred             EEECCCCcEE-------------EEEe-----------c---CCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhc
Confidence            9999875221             1111           1   22355666665533333  8999999986543211111


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      ............+.+...      .....+..+..    ...+.++.+....                        ....
T Consensus       208 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~----dg~i~i~~~~~~~------------------------~~~~  253 (368)
T 3mmy_A          208 ESPLKHQHRCVAIFKDKQ------NKPTGFALGSI----EGRVAIHYINPPN------------------------PAKD  253 (368)
T ss_dssp             CCSCSSCEEEEEEEECTT------SCEEEEEEEET----TSEEEEEESSCSC------------------------HHHH
T ss_pred             cccccCCCceEEEcccCC------CCCCeEEEecC----CCcEEEEecCCCC------------------------cccc
Confidence            111111111111111110      00000111111    2222333222100                        0011


Q ss_pred             EEEEee------------cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEE
Q psy4577         237 IEIKIN------------HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLS  304 (384)
Q Consensus       237 ~~~~~~------------~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  304 (384)
                      ......            |...|++++|+|++. +|++|+.||.|++||++        .+  ..+..+.+|..+|++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~--------~~--~~~~~~~~~~~~v~~~~  322 (368)
T 3mmy_A          254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKD--------AR--TKLKTSEQLDQPISACC  322 (368)
T ss_dssp             SEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETT--------TT--EEEEECCCCSSCEEEEE
T ss_pred             ceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECC--------CC--cEEEEecCCCCCceEEE
Confidence            122223            334799999999995 89999999999999986        33  35668889999999999


Q ss_pred             eCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577         305 WNPSLNGYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       305 ~s~~~~~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                      |+|++ .+|++|+.|+..+.|++...+
T Consensus       323 ~s~~g-~~l~~~s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          323 FNHNG-NIFAYASSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             ECTTS-SCEEEEECCCSTTCGGGCCTT
T ss_pred             ECCCC-CeEEEEecccccccccccCCC
Confidence            99999 799999999887777766543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=4.1e-24  Score=184.77  Aligned_cols=234  Identities=10%  Similarity=0.051  Sum_probs=142.7

Q ss_pred             eEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccC
Q psy4577          44 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWP  123 (384)
Q Consensus        44 ~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (384)
                      .+....+|.+.|++++|+|+|+ +|++|+.| .+++|++...+.             ..             ..+  ...
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~-~~~iw~~~~~~~-------------~~-------------~~~--~~~   60 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLK-SFEIYNVHPVAH-------------IM-------------SQE--MRH   60 (355)
T ss_dssp             --------CCCCCEEEECTTSS-EEEEECSS-EEEEEEETTEEE-------------EE-------------EEE--CSC
T ss_pred             CccccccCCCceEEEEECCCCC-EEEEEcCC-EEEEEecCCcce-------------ee-------------eee--cCC
Confidence            3445678999999999999999 77777766 478999866310             00             000  113


Q ss_pred             eeEEEEecCceeee-----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577         124 SLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH  198 (384)
Q Consensus       124 v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (384)
                      +..+++.+++..++     ++++++||..+......+.   ...++.++.+.++.            +.+..     .+.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~------------~~~~~-----~~~  120 (355)
T 3vu4_A           61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK---VDAPVKDLFLSREF------------IVVSY-----GDV  120 (355)
T ss_dssp             CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE---CSSCEEEEEECSSE------------EEEEE-----TTE
T ss_pred             eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE---CCCceEEEEEcCCE------------EEEEE-----cCE
Confidence            55677888777664     6799999987765433222   11123334333221            01110     122


Q ss_pred             EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEE--EeCCCcEEEEecCC
Q psy4577         199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIAT--KTPSSDVLVFDYTK  276 (384)
Q Consensus       199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s--~s~dg~i~iwd~~~  276 (384)
                      +.++.+.              ......       ..+.     .   ....+++++  . +++.  |+.||.|++||++.
T Consensus       121 i~i~d~~--------------~~~~~~-------~~~~-----~---~~~~~~~s~--~-~la~~sg~~~g~v~iwd~~~  168 (355)
T 3vu4_A          121 ISVFKFG--------------NPWKRI-------TDDI-----R---FGGVCEFSN--G-LLVYSNEFNLGQIHITKLQS  168 (355)
T ss_dssp             EEEEESS--------------TTCCBS-------SCCE-----E---EEEEEEEET--T-EEEEEESSCTTCEEEEECCC
T ss_pred             EEEEECC--------------CCceee-------EEec-----c---CCceEEEEc--c-EEEEeCCCcCcEEEEEECCC
Confidence            2333222              000000       0110     0   233456666  2 4454  68999999999973


Q ss_pred             CCCCCC-----CCCCccc-eeeecCCCCceEEEEeCCCCCCeEEEeeCCCc-EEEEecCCCCCCCccccceeeee-c-cC
Q psy4577         277 HPSKPD-----PNGECHP-DLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT-ICLWDINATPKENRVIDAKTIFT-G-HT  347 (384)
Q Consensus       277 ~~~~~~-----~~~~~~~-~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~-~-h~  347 (384)
                      ......     ......+ +..+.+|..+|++++|+|+| .+||||+.|++ |++||+++++       ++.++. + |.
T Consensus       169 ~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~-------~~~~~~~g~h~  240 (355)
T 3vu4_A          169 SGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGV-------LVREFRRGLDR  240 (355)
T ss_dssp             ------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCC-------EEEEEECTTCC
T ss_pred             CCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCc-------EEEEEEcCCCC
Confidence            210000     0001123 66889999999999999998 79999999999 9999999998       889998 6 99


Q ss_pred             CcEeEEEEecCCCccccccc
Q psy4577         348 AVVELELIERLTKKADPVCT  367 (384)
Q Consensus       348 ~~v~~~~~sp~~~~~~~~c~  367 (384)
                      ..|++++|+|+++.+++.+.
T Consensus       241 ~~v~~~~~s~~~~~l~s~s~  260 (355)
T 3vu4_A          241 ADVVDMKWSTDGSKLAVVSD  260 (355)
T ss_dssp             SCEEEEEECTTSCEEEEEET
T ss_pred             CcEEEEEECCCCCEEEEEEC
Confidence            99999999999998776643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=7.9e-24  Score=189.18  Aligned_cols=251  Identities=11%  Similarity=0.009  Sum_probs=158.3

Q ss_pred             cceEEEEEccCCCcEEEEEecCCeEEEEEcccCC---Cccchhheee---------------------ee-eeE------
Q psy4577          53 AKISDFSWNPNEPWVICSVSEDNIMQILSVVCVE---PFDDAVEERV---------------------IN-EEY------  101 (384)
Q Consensus        53 ~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~---~~~~~~~~~~---------------------~~-~~~------  101 (384)
                      .++++++|+|+|+ +|++ +.++.|++||+.+++   .+........                     .+ ...      
T Consensus         5 ~p~~~v~~s~dg~-~l~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRDGS-LVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSSSS-EEEE-EETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecCCCC-EEEE-EeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4789999999999 6644 568899999998875   2111100000                     00 000      


Q ss_pred             ----EEeccCCcccccceeeeeeccCeeEEEEecCceee-e----cceeeeeccc--cccccceeecccccccceeeeec
Q psy4577         102 ----KIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRV-I----NEEYKIWKKN--TPFLYDLVMTHALEWPSLTAQWL  170 (384)
Q Consensus       102 ----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~----d~~v~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~  170 (384)
                          +.++...+  .....+|  ...|.+++|+|+++.+ +    |+.+++|++.  .......+..+.....+.++.|.
T Consensus        83 ~~~~~~~~~~~~--~~~~~~~--~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  158 (450)
T 2vdu_B           83 SIKRTAAKVPSP--GLGAPPI--YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA  158 (450)
T ss_dssp             -------------------CC--CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred             cccccCccccCC--CCCCCcc--CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence                00000000  0001112  4469999999999986 4    8999999998  55554444333333334455555


Q ss_pred             cCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEE
Q psy4577         171 PDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRA  250 (384)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v  250 (384)
                      |+..                                     .+.....+.....|................+|...|+++
T Consensus       159 p~~~-------------------------------------~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~  201 (450)
T 2vdu_B          159 EDDT-------------------------------------TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDV  201 (450)
T ss_dssp             TTSS-------------------------------------EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEE
T ss_pred             CCCC-------------------------------------EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEE
Confidence            5432                                     222211111111111100000000122345799999999


Q ss_pred             EEcCC---CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceee-ecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEe
Q psy4577         251 RYMPQ---NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLR-LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWD  326 (384)
Q Consensus       251 ~~~p~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd  326 (384)
                      +|+|+   + .+|++|+.|+.|++||++        .+.  .+.. +.+|...|.+++|+ ++ .+|++|+.|++|++||
T Consensus       202 ~~sp~~~~~-~~l~s~~~d~~i~vwd~~--------~~~--~~~~~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd  268 (450)
T 2vdu_B          202 HLIKDSDGH-QFIITSDRDEHIKISHYP--------QCF--IVDKWLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWD  268 (450)
T ss_dssp             EEEECTTSC-EEEEEEETTSCEEEEEES--------CTT--CEEEECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEE
T ss_pred             EEcCCCCCC-cEEEEEcCCCcEEEEECC--------CCc--eeeeeecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEE
Confidence            99999   7 599999999999999996        332  2334 56899999999999 88 7999999999999999


Q ss_pred             cCCCCCCCccccceeeeec-------------------------cCCcEeEEEEecCCCcccccc
Q psy4577         327 INATPKENRVIDAKTIFTG-------------------------HTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~-------------------------h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      +++++       ++..+..                         +...|.+++|+|+++.+++.+
T Consensus       269 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          269 WKTGK-------NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             TTTCC-------EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             CCCCc-------EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence            99987       6666652                         235799999999999887776

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.92  E-value=4.8e-23  Score=183.90  Aligned_cols=242  Identities=17%  Similarity=0.219  Sum_probs=166.6

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCc
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPF   88 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~   88 (384)
                      .+|++|+.||+|++||+.+              .+.+..+.+|...|.+++|++  . .+++|+.|++|++||+.+++..
T Consensus       170 ~~l~s~~~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~~~~~  232 (445)
T 2ovr_B          170 NIIISGSTDRTLKVWNAET--------------GECIHTLYGHTSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQCL  232 (445)
T ss_dssp             TEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEESSSCCEE
T ss_pred             CEEEEEeCCCeEEEEECCc--------------CcEEEEECCCCCcEEEEEecC--C-EEEEEeCCCEEEEEECCCCcEE
Confidence            3799999999999999986              477788899999999999964  4 6889999999999999876422


Q ss_pred             cch----------------hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccc
Q psy4577          89 DDA----------------VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNT  148 (384)
Q Consensus        89 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~  148 (384)
                      ...                ......++.+++|+.........+.+|  ...+.+++|  ++..++    |+.+++||+.+
T Consensus       233 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~  308 (445)
T 2ovr_B          233 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQF--DGIHVVSGSLDTSIRVWDVET  308 (445)
T ss_dssp             EEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCC--SSCEEEEEE--CSSEEEEEETTSCEEEEETTT
T ss_pred             EEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCC--CCceEEEEE--CCCEEEEEeCCCeEEEEECCC
Confidence            111                011224567899987766554555556  677889998  666665    89999999987


Q ss_pred             ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCc
Q psy4577         149 PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGF  228 (384)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~  228 (384)
                      ......+..+...  ...+.+.                                       +..+.+...|.....|.. 
T Consensus       309 ~~~~~~~~~~~~~--v~~~~~~---------------------------------------~~~l~~~~~dg~i~vwd~-  346 (445)
T 2ovr_B          309 GNCIHTLTGHQSL--TSGMELK---------------------------------------DNILVSGNADSTVKIWDI-  346 (445)
T ss_dssp             CCEEEEECCCCSC--EEEEEEE---------------------------------------TTEEEEEETTSCEEEEET-
T ss_pred             CCEEEEEcCCccc--EEEEEEe---------------------------------------CCEEEEEeCCCeEEEEEC-
Confidence            6554433332211  1111110                                       111111122222222211 


Q ss_pred             cCCCCceeEEEEee---cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee-----cCCCCce
Q psy4577         229 GSVSGKIEIEIKIN---HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL-----RGHQKEG  300 (384)
Q Consensus       229 ~~~~~~~~~~~~~~---~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~i  300 (384)
                        ..+. .......   |...|.+++|++   .++++|+.||.|++||++        ++.  .+..+     .+|.+.|
T Consensus       347 --~~~~-~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~--------~~~--~~~~~~~~~~~~~~~~v  410 (445)
T 2ovr_B          347 --KTGQ-CLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLK--------TGE--FIRNLVTLESGGSGGVV  410 (445)
T ss_dssp             --TTCC-EEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETT--------TCC--EEEEEEECTTGGGTCEE
T ss_pred             --CCCc-EEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECC--------CCc--eeeeeeccccCCCCceE
Confidence              0111 1333333   888999999964   489999999999999986        343  23344     4788899


Q ss_pred             EEEEeCCCCCCeEEEeeCCCc----EEEEecCCC
Q psy4577         301 YGLSWNPSLNGYLLSASDDHT----ICLWDINAT  330 (384)
Q Consensus       301 ~~~~~s~~~~~~l~s~s~Dg~----i~iwd~~~~  330 (384)
                      ++++|+|++ .+|++|+.||+    |.+||++..
T Consensus       411 ~~~~~s~~~-~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          411 WRIRASNTK-LVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEECSSE-EEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEEecCCE-EEEEEcccCCCCccEEEEEECCCC
Confidence            999999998 79999999998    999999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=1.1e-21  Score=172.98  Aligned_cols=246  Identities=11%  Similarity=0.115  Sum_probs=160.4

Q ss_pred             CCceEEEeeCC------CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCC---eE
Q psy4577           7 NETILASSGTD------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN---IM   77 (384)
Q Consensus         7 ~~~~lat~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~---~i   77 (384)
                      +. .||.++.+      ++|++||+..               .....+.+|...|.+++|+|+|+ .|++++.|+   .|
T Consensus       143 ~~-~l~~~s~~~~~~~~~~i~i~d~~g---------------~~~~~l~~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i  205 (415)
T 2hqs_A          143 RT-RIAYVVQTNGGQFPYELRVSDYDG---------------YNQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSAL  205 (415)
T ss_dssp             TC-EEEEEEECSSSSCCEEEEEEETTS---------------CSCEEEEEESSCEEEEEECTTSS-EEEEEECTTSSCEE
T ss_pred             CC-EEEEEEecCCCCccceEEEEcCCC---------------CCCEEEeCCCCcceeeEEcCCCC-EEEEEEecCCCcEE
Confidence            44 45555544      7999999974               23355567889999999999999 777888875   99


Q ss_pred             EEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----c--ceeeeecccccc
Q psy4577          78 QILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----N--EEYKIWKKNTPF  150 (384)
Q Consensus        78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d--~~v~~w~~~~~~  150 (384)
                      ++||+.+++.             .            .+..|  ...+.+++|+|+|+.++     +  ..+.+||..+..
T Consensus       206 ~~~d~~tg~~-------------~------------~l~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          206 VIQTLANGAV-------------R------------QVASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             EEEETTTCCE-------------E------------EEECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             EEEECCCCcE-------------E------------EeecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence            9999987511             0            11122  34678999999998776     3  348888887655


Q ss_pred             ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577         151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS  230 (384)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  230 (384)
                      ...+ ..+.  .....+.|.|++.          .+.+..... ....+.+                +|...        
T Consensus       259 ~~~l-~~~~--~~~~~~~~spdg~----------~l~~~s~~~-g~~~i~~----------------~d~~~--------  300 (415)
T 2hqs_A          259 IRQV-TDGR--SNNTEPTWFPDSQ----------NLAFTSDQA-GRPQVYK----------------VNING--------  300 (415)
T ss_dssp             EEEC-CCCS--SCEEEEEECTTSS----------EEEEEECTT-SSCEEEE----------------EETTS--------
T ss_pred             EEeC-cCCC--CcccceEECCCCC----------EEEEEECCC-CCcEEEE----------------EECCC--------
Confidence            4222 2221  1233455555432          111111100 0001111                11110        


Q ss_pred             CCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC
Q psy4577         231 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPS---SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP  307 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~  307 (384)
                        +.  ......+...+.+++|+|+|+ +|+.++.+   ..|++||+.        .+..   ..+..|. .+.+++|+|
T Consensus       301 --~~--~~~l~~~~~~~~~~~~spdG~-~l~~~~~~~g~~~i~~~d~~--------~~~~---~~l~~~~-~~~~~~~sp  363 (415)
T 2hqs_A          301 --GA--PQRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLA--------TGGV---QVLSSTF-LDETPSLAP  363 (415)
T ss_dssp             --SC--CEECCCSSSEEEEEEECTTSS-EEEEEEECSSCEEEEEEETT--------TCCE---EECCCSS-SCEEEEECT
T ss_pred             --CC--EEEEecCCCcccCeEECCCCC-EEEEEECcCCceEEEEEECC--------CCCE---EEecCCC-CcCCeEEcC
Confidence              11  122234567788999999997 66665543   589999985        3332   3455554 899999999


Q ss_pred             CCCCeEEEeeCCC---cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577         308 SLNGYLLSASDDH---TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK  360 (384)
Q Consensus       308 ~~~~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  360 (384)
                      +| ++|++++.|+   .|++||+.+.        ....+.+|.+.|.+++|+|...
T Consensus       364 dg-~~l~~~s~~~~~~~l~~~d~~g~--------~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          364 NG-TMVIYSSSQGMGSVLNLVSTDGR--------FKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             TS-SEEEEEEEETTEEEEEEEETTSC--------CEEECCCSSSEEEEEEECCCCC
T ss_pred             CC-CEEEEEEcCCCccEEEEEECCCC--------cEEEeeCCCCCCcCCccccccc
Confidence            99 7888888877   7999999754        6777889999999999999764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.89  E-value=5.2e-21  Score=170.09  Aligned_cols=229  Identities=14%  Similarity=0.073  Sum_probs=150.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++. ++++++.|+.|++||+.+              .+....+.+|...+.+++|+|+++.++++++.|+.|++|
T Consensus       175 ~~~~~~~~-~~~s~~~d~~v~~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~  239 (433)
T 3bws_A          175 ISIPEHNE-LWVSQMQANAVHVFDLKT--------------LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI  239 (433)
T ss_dssp             EEEGGGTE-EEEEEGGGTEEEEEETTT--------------CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEcCCCE-EEEEECCCCEEEEEECCC--------------ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence            35788886 899999999999999976              356667778889999999999999565676789999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee------------cceeeeecccc
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI------------NEEYKIWKKNT  148 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------------d~~v~~w~~~~  148 (384)
                      |+.+++.             +..+.           .   ...+.+++|+|+++.++            ++.+++||..+
T Consensus       240 d~~~~~~-------------~~~~~-----------~---~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~  292 (433)
T 3bws_A          240 DRKTKLE-------------IRKTD-----------K---IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK  292 (433)
T ss_dssp             ETTTTEE-------------EEECC-----------C---CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred             ECCCCcE-------------EEEec-----------C---CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence            9976411             11111           1   12367899999997765            24788999876


Q ss_pred             ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccc-cccCcCCCCCC
Q psy4577         149 PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDAS-NYDTDKGDFGG  227 (384)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~d~~~~~~~~  227 (384)
                      ..........   .....+.|.|+                                     +..+.+. ..+.....|..
T Consensus       293 ~~~~~~~~~~---~~~~~~~~~~~-------------------------------------g~~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          293 EKLIDTIGPP---GNKRHIVSGNT-------------------------------------ENKIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             TEEEEEEEEE---ECEEEEEECSS-------------------------------------TTEEEEEETTTTEEEEEET
T ss_pred             CcEEeeccCC---CCcceEEECCC-------------------------------------CCEEEEEecCCCEEEEEEC
Confidence            5443322111   01222333332                                     2211111 12222222111


Q ss_pred             ccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeC---------------CCcEEEEecCCCCCCCCCCCCccceee
Q psy4577         228 FGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTP---------------SSDVLVFDYTKHPSKPDPNGECHPDLR  292 (384)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~  292 (384)
                      .   .+.  ......+...+.+++|+|+++ ++++++.               ||.|++||+.        ++.  .+..
T Consensus       333 ~---~~~--~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~--------~~~--~~~~  396 (433)
T 3bws_A          333 K---EKK--VQKSIPVFDKPNTIALSPDGK-YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT--------TDT--VKEF  396 (433)
T ss_dssp             T---TTE--EEEEEECSSSEEEEEECTTSS-EEEEEECCCCCTTTCTTSCCSSCCEEEEEETT--------TTE--EEEE
T ss_pred             C---CCc--EEEEecCCCCCCeEEEcCCCC-EEEEEecCCCccccccccccccceEEEEEECC--------CCc--EEEE
Confidence            0   111  223335778899999999996 6666655               5799999985        332  3445


Q ss_pred             ecCCCCceEEEEeCCCCCCeEEEeeC-CCcEEEEecCC
Q psy4577         293 LRGHQKEGYGLSWNPSLNGYLLSASD-DHTICLWDINA  329 (384)
Q Consensus       293 ~~~h~~~i~~~~~s~~~~~~l~s~s~-Dg~i~iwd~~~  329 (384)
                      +.. ...+.+++|+|+| .+|++++. |++|++|++..
T Consensus       397 ~~~-~~~~~~~~~s~dg-~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          397 WEA-GNQPTGLDVSPDN-RYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEC-SSSEEEEEECTTS-CEEEEEETTTTEEEEEEETT
T ss_pred             ecC-CCCCceEEEcCCC-CEEEEEECCCCeEEEEEecC
Confidence            554 4578999999998 68877764 99999999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=1.1e-20  Score=158.86  Aligned_cols=255  Identities=13%  Similarity=0.105  Sum_probs=161.3

Q ss_pred             eeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEccc-CCCccchh
Q psy4577          14 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVC-VEPFDDAV   92 (384)
Q Consensus        14 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~   92 (384)
                      ++.|++|++||+.+              .+ ...+..|...|.+++|+|+++ +|++++ ++.|++||+.+ ++..    
T Consensus        18 ~~~~~~i~~~d~~~--------------~~-~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~----   76 (297)
T 2ojh_A           18 GSMRSSIEIFNIRT--------------RK-MRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPE----   76 (297)
T ss_dssp             CCCCEEEEEEETTT--------------TE-EEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCE----
T ss_pred             CCcceeEEEEeCCC--------------Cc-eeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCce----
Confidence            46789999999976              12 234456888999999999999 666655 88999999977 5211    


Q ss_pred             heeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee------cceeeeeccc--cccccceeecccccccc
Q psy4577          93 EERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI------NEEYKIWKKN--TPFLYDLVMTHALEWPS  164 (384)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------d~~v~~w~~~--~~~~~~~~~~~~~~~~~  164 (384)
                               .+           ..++ ....+.+++|+|+++.++      ++..++|..+  +..... +...   ...
T Consensus        77 ---------~~-----------~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~---~~~  131 (297)
T 2ojh_A           77 ---------KV-----------DTGF-ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-MTKN---LPS  131 (297)
T ss_dssp             ---------EC-----------CCTT-CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-CCSS---SSE
T ss_pred             ---------Ee-----------cccc-ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-eecC---CCc
Confidence                     11           1111 124567899999999887      2456676553  222111 1111   112


Q ss_pred             eeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecC
Q psy4577         165 LTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHE  244 (384)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  244 (384)
                      ..+.|.|+..          .+.+....   ...+.+..+..              .          .+  .......+.
T Consensus       132 ~~~~~spdg~----------~l~~~~~~---~~~~~l~~~~~--------------~----------~~--~~~~~~~~~  172 (297)
T 2ojh_A          132 YWHGWSPDGK----------SFTYCGIR---DQVFDIYSMDI--------------D----------SG--VETRLTHGE  172 (297)
T ss_dssp             EEEEECTTSS----------EEEEEEEE---TTEEEEEEEET--------------T----------TC--CEEECCCSS
T ss_pred             cceEECCCCC----------EEEEEECC---CCceEEEEEEC--------------C----------CC--cceEcccCC
Confidence            3344544432          11100000   11112222211              0          01  123344577


Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC-----
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD-----  319 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D-----  319 (384)
                      ..+.+++|+|+++.+++++..++.++||++..         .......+..|...+.+++|+|++ .+|++++.+     
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~  242 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV---------DGSSVERITDSAYGDWFPHPSPSG-DKVVFVSYDADVFD  242 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEET---------TSSCEEECCCCSEEEEEEEECTTS-SEEEEEEEETTCCS
T ss_pred             CccccceECCCCCEEEEEecCCCCccEEEECC---------CCCCcEEEecCCcccCCeEECCCC-CEEEEEEcCCCCCc
Confidence            88999999999974444555699999999852         112345677788889999999999 788888876     


Q ss_pred             ------CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         320 ------HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       320 ------g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                            +.|++||+.+++..     .+..+.+|...|.+++|+|+++.++..+..
T Consensus       243 ~~~~~~~~l~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          243 HPRDLDVRVQLMDMDGGNVE-----TLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             CCSSEEEEEEEEETTSCSCE-----EEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             ccccCceEEEEEecCCCCce-----eeeccCCCCcccccceECCCCCEEEEEEec
Confidence                  56999999887511     345555788899999999999987766543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.88  E-value=2e-21  Score=171.35  Aligned_cols=260  Identities=12%  Similarity=0.141  Sum_probs=167.6

Q ss_pred             CCCCCCCceEEEee----CCC----eEEEeec--CCcCcccccCCCCCCCCeeE--EEecccccceEEEEEccC------
Q psy4577           2 QWSPHNETILASSG----TDR----RLHVWDL--SKIGEEQSTEDAEDGPPELL--FIHGGHTAKISDFSWNPN------   63 (384)
Q Consensus         2 ~fsp~~~~~lat~~----~d~----~i~vwd~--~~~~~~~~~~~~~~~~~~~~--~~~~gh~~~V~~l~~~~~------   63 (384)
                      +|++.+..++|+|+    .||    +|+|||+  .+              .+.+  ..+.+|...+..+++++.      
T Consensus        69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  134 (415)
T 2hqs_A           69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP--------------GTVLAQNSYKVNKQWLRYAGHTASDEVFEK  134 (415)
T ss_dssp             HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST--------------TCEEEEEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC--------------CCEEeeeEEEcChhHHHHHHHHHHHHHHHH
Confidence            46778877888886    467    8999999  65              2333  557889888988888752      


Q ss_pred             --------CCcEEEEEecC------CeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEE
Q psy4577          64 --------EPWVICSVSED------NIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQW  129 (384)
Q Consensus        64 --------~~~~l~s~s~D------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  129 (384)
                              +. .++.++.+      ++|++||+.....                         ..+.+|  ...+.+++|
T Consensus       135 ~~g~~~~~~~-~l~~~s~~~~~~~~~~i~i~d~~g~~~-------------------------~~l~~~--~~~v~~~~~  186 (415)
T 2hqs_A          135 LTGIKGAFRT-RIAYVVQTNGGQFPYELRVSDYDGYNQ-------------------------FVVHRS--PQPLMSPAW  186 (415)
T ss_dssp             HHSSCCCTTC-EEEEEEECSSSSCCEEEEEEETTSCSC-------------------------EEEEEE--SSCEEEEEE
T ss_pred             HcCCCCcCCC-EEEEEEecCCCCccceEEEEcCCCCCC-------------------------EEEeCC--CCcceeeEE
Confidence                    44 34455554      7999999865310                         123334  567889999


Q ss_pred             ecCceeee----c---ceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEE
Q psy4577         130 LPDVTRVI----N---EEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIA  202 (384)
Q Consensus       130 ~~~~~~~~----d---~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  202 (384)
                      +|+|+.++    +   ..+++||+.+.....+ ..+.  .....+.|.|++.          .+.+.... +....+.+ 
T Consensus       187 Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l-~~~~--~~~~~~~~spdg~----------~la~~~~~-~g~~~i~~-  251 (415)
T 2hqs_A          187 SPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFP--RHNGAPAFSPDGS----------KLAFALSK-TGSLNLYV-  251 (415)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEETTTCCEEEE-ECCS--SCEEEEEECTTSS----------EEEEEECT-TSSCEEEE-
T ss_pred             cCCCCEEEEEEecCCCcEEEEEECCCCcEEEe-ecCC--CcccCEEEcCCCC----------EEEEEEec-CCCceEEE-
Confidence            99999887    3   3899999977654322 2221  1234455655542          01100000 00011111 


Q ss_pred             EeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeC-CC--cEEEEecCCCCC
Q psy4577         203 SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTP-SS--DVLVFDYTKHPS  279 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~-dg--~i~iwd~~~~~~  279 (384)
                                     +|..          .+.  ...+..|...+.+++|+|+|+ .|+.++. ++  .|++||+.    
T Consensus       252 ---------------~d~~----------~~~--~~~l~~~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~----  299 (415)
T 2hqs_A          252 ---------------MDLA----------SGQ--IRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNIN----  299 (415)
T ss_dssp             ---------------EETT----------TCC--EEECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETT----
T ss_pred             ---------------EECC----------CCC--EEeCcCCCCcccceEECCCCC-EEEEEECCCCCcEEEEEECC----
Confidence                           1111          111  234456788899999999996 6666664 55  56666764    


Q ss_pred             CCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC---CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577         280 KPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD---HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIE  356 (384)
Q Consensus       280 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  356 (384)
                          .+.   ...+..|...+.+++|+|+| ++|++++.+   ..|++||+.+++       . ..+..|. .+.+++|+
T Consensus       300 ----~~~---~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~-------~-~~l~~~~-~~~~~~~s  362 (415)
T 2hqs_A          300 ----GGA---PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGG-------V-QVLSSTF-LDETPSLA  362 (415)
T ss_dssp             ----SSC---CEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCC-------E-EECCCSS-SCEEEEEC
T ss_pred             ----CCC---EEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCC-------E-EEecCCC-CcCCeEEc
Confidence                222   23455677789999999999 788888765   589999999875       4 3455554 89999999


Q ss_pred             cCCCccccccc
Q psy4577         357 RLTKKADPVCT  367 (384)
Q Consensus       357 p~~~~~~~~c~  367 (384)
                      |+|+.++..+.
T Consensus       363 pdg~~l~~~s~  373 (415)
T 2hqs_A          363 PNGTMVIYSSS  373 (415)
T ss_dssp             TTSSEEEEEEE
T ss_pred             CCCCEEEEEEc
Confidence            99997766543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.88  E-value=1.5e-20  Score=170.80  Aligned_cols=278  Identities=9%  Similarity=0.043  Sum_probs=170.1

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-ccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      .|+|++. ++++++.|++|.+||..+              .+++.++. +|.  +.+++|+|+|+ +|++++.|++|++|
T Consensus       144 ~~~p~~~-~~vs~~~d~~V~v~D~~t--------------~~~~~~i~~g~~--~~~v~~spdg~-~l~v~~~d~~V~v~  205 (543)
T 1nir_A          144 DLDLPNL-FSVTLRDAGQIALVDGDS--------------KKIVKVIDTGYA--VHISRMSASGR-YLLVIGRDARIDMI  205 (543)
T ss_dssp             CCCGGGE-EEEEEGGGTEEEEEETTT--------------CCEEEEEECSTT--EEEEEECTTSC-EEEEEETTSEEEEE
T ss_pred             ccCCCCE-EEEEEcCCCeEEEEECCC--------------ceEEEEEecCcc--cceEEECCCCC-EEEEECCCCeEEEE
Confidence            4788875 899999999999999986              35666666 443  89999999999 77899999999999


Q ss_pred             Ec--ccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec----Cceeee-----cceeeeeccccc
Q psy4577          81 SV--VCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP----DVTRVI-----NEEYKIWKKNTP  149 (384)
Q Consensus        81 d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~-----d~~v~~w~~~~~  149 (384)
                      |+  .+++.             +.           .+.   ....+..++|+|    +|+.++     +++|.+||..+.
T Consensus       206 D~~~~t~~~-------------~~-----------~i~---~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~  258 (543)
T 1nir_A          206 DLWAKEPTK-------------VA-----------EIK---IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  258 (543)
T ss_dssp             ETTSSSCEE-------------EE-----------EEE---CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             ECcCCCCcE-------------EE-----------EEe---cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence            99  44311             11           111   022356899999    998876     789999998765


Q ss_pred             cccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccc-ccCcCCCCCCc
Q psy4577         150 FLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASN-YDTDKGDFGGF  228 (384)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~~~  228 (384)
                      .....+.........  ..+.+..                          .+..+.+++++..+.+.. .+.....+.. 
T Consensus       259 ~~~~~i~~~g~~~~~--~~~~~~~--------------------------~v~~i~~s~~~~~~~vs~~~~g~i~vvd~-  309 (543)
T 1nir_A          259 EPKQIVSTRGMTVDT--QTYHPEP--------------------------RVAAIIASHEHPEFIVNVKETGKVLLVNY-  309 (543)
T ss_dssp             CEEEEEECCEECSSS--CCEESCC--------------------------CEEEEEECSSSSEEEEEETTTTEEEEEEC-
T ss_pred             ccceeecccCcccCc--cccccCC--------------------------ceEEEEECCCCCEEEEEECCCCeEEEEEe-
Confidence            554433321110000  0000000                          111122222211111110 0111100000 


Q ss_pred             cCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC----CCCceEEEE
Q psy4577         229 GSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG----HQKEGYGLS  304 (384)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----h~~~i~~~~  304 (384)
                        ............+...+..++|+|+++.+++++..+++|.+||..        ++..  +..+..    |.+....+ 
T Consensus       310 --~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~--------tg~l--~~~i~~g~~ph~g~g~~~-  376 (543)
T 1nir_A          310 --KDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK--------DRRL--SALVDVGKTPHPGRGANF-  376 (543)
T ss_dssp             --TTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT--------TTEE--EEEEECSSSBCCTTCEEE-
T ss_pred             --cCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECC--------CCeE--EEeeccCCCCCCCCCccc-
Confidence              000111122334666788999999997566677778999999986        4433  333432    54433333 


Q ss_pred             eCCCCCCeEEEee-CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         305 WNPSLNGYLLSAS-DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       305 ~s~~~~~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      ++|++..+++|++ .|++|.+||+.+..........++++.+|...+..++|||+++.+....
T Consensus       377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence            4777325788876 6899999999983211112238999999998899999999998765543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=1.5e-21  Score=172.60  Aligned_cols=106  Identities=15%  Similarity=0.097  Sum_probs=85.5

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      +|...|.+++|+|++.++|++++.||+|++||++        .+  .......+|...|++++|+|+| .+|++|+.||+
T Consensus       147 ~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~--------~~--~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~  215 (434)
T 2oit_A          147 DAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT--------ET--VKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGT  215 (434)
T ss_dssp             SGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES--------SS--EEEEEEECGGGCEEEEEECTTS-SCEEEEETTSC
T ss_pred             CCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC--------CC--cceeeccCCCCceeEEEEcCCC-CEEEEEcCCCc
Confidence            5788999999999844699999999999999996        33  2344566788999999999998 79999999999


Q ss_pred             EEEEecCCCCCCCccccceeeeec-------cCCcEeEEEEecCCCcccccc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTG-------HTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      |++||++ ++       ....+..       |...|.+++|++++..+++..
T Consensus       216 v~iwd~~-~~-------~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~  259 (434)
T 2oit_A          216 VVQYLPT-LQ-------EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA  259 (434)
T ss_dssp             EEEECTT-CC-------EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEccC-Cc-------ccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence            9999998 44       4444433       334899999999887765443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.87  E-value=7e-19  Score=159.83  Aligned_cols=280  Identities=11%  Similarity=0.059  Sum_probs=171.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeec--CCcCcccccCCCCCCCCeeEEEecccccceEEEEEcc----CCCcEEEEEe-c
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDL--SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP----NEPWVICSVS-E   73 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~----~~~~~l~s~s-~   73 (384)
                      ++|+|+++ +|++++.|++|++||+  .+              .+++..+.. ...+..++|+|    +|+ +|++++ .
T Consensus       184 v~~spdg~-~l~v~~~d~~V~v~D~~~~t--------------~~~~~~i~~-g~~p~~va~sp~~~~dg~-~l~v~~~~  246 (543)
T 1nir_A          184 SRMSASGR-YLLVIGRDARIDMIDLWAKE--------------PTKVAEIKI-GIEARSVESSKFKGYEDR-YTIAGAYW  246 (543)
T ss_dssp             EEECTTSC-EEEEEETTSEEEEEETTSSS--------------CEEEEEEEC-CSEEEEEEECCSTTCTTT-EEEEEEEE
T ss_pred             EEECCCCC-EEEEECCCCeEEEEECcCCC--------------CcEEEEEec-CCCcceEEeCCCcCCCCC-EEEEEEcc
Confidence            46999998 7999999999999999  44              355666664 34689999999    999 555665 5


Q ss_pred             CCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccc
Q psy4577          74 DNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNT  148 (384)
Q Consensus        74 D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~  148 (384)
                      +++|.+||..+.+.             ++.+....... .....| .+..+.++.++|++..++     ++++.+||...
T Consensus       247 ~~~v~v~D~~t~~~-------------~~~i~~~g~~~-~~~~~~-~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~  311 (543)
T 1nir_A          247 PPQFAIMDGETLEP-------------KQIVSTRGMTV-DTQTYH-PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD  311 (543)
T ss_dssp             SSEEEEEETTTCCE-------------EEEEECCEECS-SSCCEE-SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred             CCeEEEEecccccc-------------ceeecccCccc-Cccccc-cCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence            89999999877522             12211111000 000001 123577899999887655     78999999866


Q ss_pred             ccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCc
Q psy4577         149 PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGF  228 (384)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~  228 (384)
                      ...... ...........+.|.|++.          .+......   .+.+.+                +|..       
T Consensus       312 ~~~l~~-~~i~~~~~~~~~~~spdg~----------~l~va~~~---~~~v~v----------------~D~~-------  354 (543)
T 1nir_A          312 IDNLTV-TSIGAAPFLHDGGWDSSHR----------YFMTAANN---SNKVAV----------------IDSK-------  354 (543)
T ss_dssp             SSSCEE-EEEECCSSCCCEEECTTSC----------EEEEEEGG---GTEEEE----------------EETT-------
T ss_pred             CCccee-EEeccCcCccCceECCCCC----------EEEEEecC---CCeEEE----------------EECC-------
Confidence            433221 0000000111233333321          01111100   111111                1211       


Q ss_pred             cCCCCceeEEEEe----ecCCceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEE
Q psy4577         229 GSVSGKIEIEIKI----NHEGEVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGL  303 (384)
Q Consensus       229 ~~~~~~~~~~~~~----~~~~~v~~v~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  303 (384)
                         .+++ .....    .|.+....+ ++|++..+++++. .|++|.+||+......   ....+.+.++.+|...+..+
T Consensus       355 ---tg~l-~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~---~~~~~~v~~l~~~g~~~~~v  426 (543)
T 1nir_A          355 ---DRRL-SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP---QYAWKKVAELQGQGGGSLFI  426 (543)
T ss_dssp             ---TTEE-EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCSCCCCE
T ss_pred             ---CCeE-EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc---hhcCeEEEEEEcCCCCceEE
Confidence               1222 11111    255444443 4787445888876 6899999998631100   12245677899998889999


Q ss_pred             EeCCCCCCeEEEee-------CCCcEEEEecCCCCCCCccccce-eee--------eccCCcEeEEEEecCCCccccc
Q psy4577         304 SWNPSLNGYLLSAS-------DDHTICLWDINATPKENRVIDAK-TIF--------TGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       304 ~~s~~~~~~l~s~s-------~Dg~i~iwd~~~~~~~~~~~~~~-~~~--------~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      +++|++ ++|++++       .+++|.+||+.+.+       .. ..+        ..+...+..++|+|+|+.+...
T Consensus       427 ~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s  496 (543)
T 1nir_A          427 KTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLD-------AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS  496 (543)
T ss_dssp             ECCTTC-CEEEECCTTCSSHHHHTCEEEEETTCTT-------SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred             EcCCCC-CcEEEecCCCCCcccCceEEEEECCCCC-------CCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence            999999 7999887       37899999999987       33 332        4567889999999999987643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.86  E-value=6.9e-20  Score=174.00  Aligned_cols=103  Identities=8%  Similarity=0.040  Sum_probs=77.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEE-EeCCCCCCeE-EEeeCCC--c
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGL-SWNPSLNGYL-LSASDDH--T  321 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~-~~s~~~~~~l-~s~s~Dg--~  321 (384)
                      .+..++|+|+|+ ++++++.||.++||.+..       .+.   ...+..|...+..+ .|+|++ +.| ++++.|+  .
T Consensus       338 ~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~-------~~~---~~~l~~~~~~v~~~~~~s~dg-~~l~~~~~~~~~~~  405 (741)
T 2ecf_A          338 LHNSLRFLDDGS-ILWSSERTGFQHLYRIDS-------KGK---AAALTHGNWSVDELLAVDEKA-GLAYFRAGIESARE  405 (741)
T ss_dssp             CCSCCEECTTSC-EEEEECTTSSCEEEEECS-------SSC---EEESCCSSSCEEEEEEEETTT-TEEEEEECSSCTTC
T ss_pred             cCCceEECCCCe-EEEEecCCCccEEEEEcC-------CCC---eeeeeecceEEEeEeEEeCCC-CEEEEEEeCCCCce
Confidence            456899999997 899999999999998742       222   45677788888887 599998 555 5566666  8


Q ss_pred             EEEEecCC-CCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         322 ICLWDINA-TPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       322 i~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      ++||++.. +.       ....+.. ...+..++|+||++.++..+..
T Consensus       406 ~~l~~~~~~g~-------~~~~l~~-~~~~~~~~~spdg~~l~~~~~~  445 (741)
T 2ecf_A          406 SQIYAVPLQGG-------QPQRLSK-APGMHSASFARNASVYVDSWSN  445 (741)
T ss_dssp             BEEEEEETTCC-------CCEECCC-SCSEEEEEECTTSSEEEEEEEE
T ss_pred             EEEEEEEcCCC-------Ceeeccc-CCCceEEEECCCCCEEEEEecC
Confidence            99999875 33       4555554 5668899999999987766543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=1.1e-19  Score=156.14  Aligned_cols=273  Identities=11%  Similarity=0.076  Sum_probs=155.2

Q ss_pred             CCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecC-CeEEEEEcc--
Q psy4577           7 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED-NIMQILSVV--   83 (384)
Q Consensus         7 ~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D-~~i~vwd~~--   83 (384)
                      ++.++++++.|+.|++||+...+           ..+.+.. ..|...+.+++|+|+++ .|++++.+ +.|++|++.  
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~spdg~-~l~~~~~~~~~v~~~~~~~~   70 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEG-----------ALTLTQV-VDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAYRIAPD   70 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTS-----------CEEEEEE-EECSSCCCCEEECTTSS-EEEEEETTTTEEEEEEECTT
T ss_pred             eEEEEEeCCCCCeEEEEEECCCC-----------cEEEeee-EecCCCCceEEECCCCC-EEEEeecCCCeEEEEEecCC
Confidence            33456666889999999996321           1122332 34677899999999999 55566665 999999997  


Q ss_pred             cCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeecc
Q psy4577          84 CVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTH  158 (384)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~  158 (384)
                      +++              ...       + ..+..   ...+..++|+|+++.++     ++.+.+|+.............
T Consensus        71 ~~~--------------~~~-------~-~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~  125 (343)
T 1ri6_A           71 DGA--------------LTF-------A-AESAL---PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV  125 (343)
T ss_dssp             TCC--------------EEE-------E-EEEEC---SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE
T ss_pred             CCc--------------eee-------c-ccccc---CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc
Confidence            321              000       0 00111   22567899999998775     678999998422111111111


Q ss_pred             cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE-
Q psy4577         159 ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI-  237 (384)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-  237 (384)
                      ........+.|.|+..          .+.+....   .+.+.++.+.                .         .+.... 
T Consensus       126 ~~~~~~~~~~~s~dg~----------~l~~~~~~---~~~v~~~d~~----------------~---------~~~~~~~  167 (343)
T 1ri6_A          126 EGLDGCHSANISPDNR----------TLWVPALK---QDRICLFTVS----------------D---------DGHLVAQ  167 (343)
T ss_dssp             CCCTTBCCCEECTTSS----------EEEEEEGG---GTEEEEEEEC----------------T---------TSCEEEE
T ss_pred             cCCCCceEEEECCCCC----------EEEEecCC---CCEEEEEEec----------------C---------CCceeee
Confidence            1111122334444321          11111100   1122222221                0         011111 


Q ss_pred             ---EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec----CC--CCceEEEEeCCC
Q psy4577         238 ---EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR----GH--QKEGYGLSWNPS  308 (384)
Q Consensus       238 ---~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~h--~~~i~~~~~s~~  308 (384)
                         .........+..++|+|+++.+++++..++.|++|++...      .+.......+.    ++  ...+..++|+|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d  241 (343)
T 1ri6_A          168 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP------HGNIECVQTLDMMPENFSDTRWAADIHITPD  241 (343)
T ss_dssp             EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT------TSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred             cccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC------CCcEEEEeeccccCccccccCCccceEECCC
Confidence               1122234578899999999755666668999999998521      12222122221    11  235778999999


Q ss_pred             CCCeEE-EeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         309 LNGYLL-SASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       309 ~~~~l~-s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      + ++|+ ++..|+.|++||+......   ...+..+..+.. +.+++|+|+++.+...+
T Consensus       242 g-~~l~v~~~~~~~i~v~d~~~~~~~---~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~  295 (343)
T 1ri6_A          242 G-RHLYACDRTASLITVFSVSEDGSV---LSKEGFQPTETQ-PRGFNVDHSGKYLIAAG  295 (343)
T ss_dssp             S-SEEEEEETTTTEEEEEEECTTSCC---EEEEEEEECSSS-CCCEEECTTSSEEEEEC
T ss_pred             C-CEEEEEecCCCEEEEEEEcCCCCc---eEEeeeecCCCc-cceEEECCCCCEEEEec
Confidence            8 5555 6668999999999842110   114444544444 88999999999776665

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=2.3e-19  Score=153.59  Aligned_cols=270  Identities=7%  Similarity=-0.011  Sum_probs=161.7

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .|.+++..++++++.++.|.+||..+              .++...+..+...+ +++|+|+++.+++++..++.|.+||
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~--------------~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d   68 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDT--------------LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIE   68 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTT--------------CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcc--------------cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEE
Confidence            46777776789999999999999986              24444445555567 9999999995665555689999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c-c--eeeeeccccccccce
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N-E--EYKIWKKNTPFLYDL  154 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d-~--~v~~w~~~~~~~~~~  154 (384)
                      +.+++..            ..           .+..+  ..+..+++|+|+++.++    + +  .+.+|+..+......
T Consensus        69 ~~~~~~~------------~~-----------~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~  123 (331)
T 3u4y_A           69 TQLEPPK------------VV-----------AIQEG--QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST  123 (331)
T ss_dssp             CSSSSCE------------EE-----------EEEEC--SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred             CCCCcee------------EE-----------ecccC--CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence            9875210            00           11111  22333499999999876    2 3  899999877655333


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe-EEEEEeecCCCCcccccccccCcCCCCCCccCCCC
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH-LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSG  233 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  233 (384)
                      +....   ....+.|.|++.          .+.+....   .+. +.++.+.              .           .+
T Consensus       124 ~~~~~---~~~~~~~spdg~----------~l~~~~~~---~~~~i~~~~~~--------------~-----------~g  162 (331)
T 3u4y_A          124 IPIPY---DAVGIAISPNGN----------GLILIDRS---SANTVRRFKID--------------A-----------DG  162 (331)
T ss_dssp             EECCT---TEEEEEECTTSS----------CEEEEEET---TTTEEEEEEEC--------------T-----------TC
T ss_pred             EECCC---CccceEECCCCC----------EEEEEecC---CCceEEEEEEC--------------C-----------CC
Confidence            22211   123344544432          01111000   111 2222222              0           00


Q ss_pred             ce-eE-EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc-cceeeecCCCCceEEEEeCCCCC
Q psy4577         234 KI-EI-EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC-HPDLRLRGHQKEGYGLSWNPSLN  310 (384)
Q Consensus       234 ~~-~~-~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~s~~~~  310 (384)
                      .. .. ............++|+|+++.+++++..++.|++||+.        .+.. ..+..+.. ...+..++|+|+| 
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~--------~~~~~~~~~~~~~-~~~~~~~~~spdg-  232 (331)
T 3u4y_A          163 VLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ--------NPENITLLNAVGT-NNLPGTIVVSRDG-  232 (331)
T ss_dssp             CEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS--------STTSCEEEEEEEC-SSCCCCEEECTTS-
T ss_pred             cEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC--------CCcccceeeeccC-CCCCceEEECCCC-
Confidence            11 00 12223455688999999997567777789999999986        3332 11334443 3567899999999 


Q ss_pred             CeE-EEeeCCCcEEEEecCCCCCCCccccceeeeecc----C---CcEeEEEEecCCCccccccc
Q psy4577         311 GYL-LSASDDHTICLWDINATPKENRVIDAKTIFTGH----T---AVVELELIERLTKKADPVCT  367 (384)
Q Consensus       311 ~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h----~---~~v~~~~~sp~~~~~~~~c~  367 (384)
                      ++| ++...++.|.+||+.+++..     .+..+..+    .   .....++|+|+++.+...+.
T Consensus       233 ~~l~v~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  292 (331)
T 3u4y_A          233 STVYVLTESTVDVFNFNQLSGTLS-----FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN  292 (331)
T ss_dssp             SEEEEECSSEEEEEEEETTTTEEE-----EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEET
T ss_pred             CEEEEEEcCCCEEEEEECCCCcee-----eecccccccccCCCCcccccceEECCCCCEEEEecC
Confidence            554 55556889999999987510     13322221    2   22356899999998765543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.85  E-value=2.6e-19  Score=169.57  Aligned_cols=315  Identities=10%  Similarity=0.079  Sum_probs=175.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccccc---ceEEEEEccCCCcEEEEEecC---
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA---KISDFSWNPNEPWVICSVSED---   74 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~---~V~~l~~~~~~~~~l~s~s~D---   74 (384)
                      ++|+|||+ ++++ +.||+|++||+.+.              +....+.+|..   .|.+++|||||+ .|++++.+   
T Consensus        22 ~~~spdg~-~~~~-~~dg~i~~~d~~~g--------------~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~~~   84 (723)
T 1xfd_A           22 AKWISDTE-FIYR-EQKGTVRLWNVETN--------------TSTVLIEGKKIESLRAIRYEISPDRE-YALFSYNVEPI   84 (723)
T ss_dssp             CCBSSSSC-BCCC-CSSSCEEEBCGGGC--------------CCEEEECTTTTTTTTCSEEEECTTSS-EEEEEESCCCC
T ss_pred             cEEcCCCc-EEEE-eCCCCEEEEECCCC--------------cEEEEeccccccccccceEEECCCCC-EEEEEecCccc
Confidence            57999998 6776 68999999999862              33444566654   499999999999 66777664   


Q ss_pred             ------CeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeec
Q psy4577          75 ------NIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWK  145 (384)
Q Consensus        75 ------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~  145 (384)
                            +.+.+||+.+++.              +...        ...+|  ...+..++|+|+|+.++   ++.+++|+
T Consensus        85 ~~~~~~~~i~~~d~~~~~~--------------~~l~--------~~~~~--~~~~~~~~~SPdG~~la~~~~~~i~~~~  140 (723)
T 1xfd_A           85 YQHSYTGYYVLSKIPHGDP--------------QSLD--------PPEVS--NAKLQYAGWGPKGQQLIFIFENNIYYCA  140 (723)
T ss_dssp             SSSCCCSEEEEEESSSCCC--------------EECC--------CTTCC--SCCCSBCCBCSSTTCEEEEETTEEEEES
T ss_pred             eeecceeeEEEEECCCCce--------------Eecc--------CCccc--cccccccEECCCCCEEEEEECCeEEEEE
Confidence                  7888999987521              0000        00011  23366788999998877   77899998


Q ss_pred             cccccccceeecccccc----------------cceeeeeccCCCCCC-----CCc------------------------
Q psy4577         146 KNTPFLYDLVMTHALEW----------------PSLTAQWLPDVTRPE-----GKD------------------------  180 (384)
Q Consensus       146 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-----~~~------------------------  180 (384)
                      ..+.....+........                ....+.|.|++....     ...                        
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (723)
T 1xfd_A          141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (723)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence            87655443322211110                113566777764110     000                        


Q ss_pred             ----c-ceeEEEEeeeccC------CC-----CeEEEEEeecCCCCcccccccccCcCCCCCCccC-CCCceeEEEEeec
Q psy4577         181 ----Y-SIHRLILGTHTSD------EQ-----NHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS-VSGKIEIEIKINH  243 (384)
Q Consensus       181 ----~-~~~~~~~~~~~~~------~~-----~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~  243 (384)
                          . .....+.......      ..     ....+..+.+++++..+...............++ ..+.........+
T Consensus       221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~  300 (723)
T 1xfd_A          221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES  300 (723)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred             CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc
Confidence                0 0011111111100      00     1345677788887765433222111000000111 1223222222234


Q ss_pred             CCceE----EEEEcCCCCcEEEE-EeCCC------cEEEEecCCCCCCCCCCCCccceeeecCCCCceEE-EEeCCCCCC
Q psy4577         244 EGEVN----RARYMPQNPCVIAT-KTPSS------DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG-LSWNPSLNG  311 (384)
Q Consensus       244 ~~~v~----~v~~~p~~~~~l~s-~s~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~s~~~~~  311 (384)
                      .+.+.    .++|+|+|+.+++. +..++      .|++||...       .+.......+..+...+.. ++|+||| +
T Consensus       301 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~-------~~~~~~~~~l~~~~~~~~~~~~~spdg-~  372 (723)
T 1xfd_A          301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP-------NSSNDNIQSITSGDWDVTKILAYDEKG-N  372 (723)
T ss_dssp             SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC-------CSSSCCCCBSCCSSSCEEEEEEEETTT-T
T ss_pred             CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccC-------CCCccceeEeecCCeEEEeeeEEcCCC-C
Confidence            44443    78999999755444 55677      466666211       2220002233433344544 6999999 6


Q ss_pred             eEEEeeCC---CcEEEEecCCCCCCCccccceeeeec---cCCcEeEEEEecCCCccccccccc
Q psy4577         312 YLLSASDD---HTICLWDINATPKENRVIDAKTIFTG---HTAVVELELIERLTKKADPVCTLE  369 (384)
Q Consensus       312 ~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~sp~~~~~~~~c~~~  369 (384)
                      .|+..+.+   +.++||++......     ....+..   |...+..++|+|+++.++..|...
T Consensus       373 ~l~~~~~~~~~~~~~l~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~  431 (723)
T 1xfd_A          373 KIYFLSTEDLPRRRQLYSANTVGNF-----NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP  431 (723)
T ss_dssp             EEEEEESSSCTTCCEEEEECSSTTC-----CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred             EEEEEEcCCCCcceEEEEEeCCCCC-----CcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence            77655554   89999999754210     2223333   677799999999999877665543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=4.7e-19  Score=152.71  Aligned_cols=243  Identities=7%  Similarity=0.057  Sum_probs=150.5

Q ss_pred             CCCCCCCCceEEEeeC--CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEe-cCCeE
Q psy4577           1 VQWSPHNETILASSGT--DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS-EDNIM   77 (384)
Q Consensus         1 v~fsp~~~~~lat~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s-~D~~i   77 (384)
                      ++|+|+++ +++++..  ++.|.+||+....            .+.+..+..|...+..++|+|+|+ .|++++ .+++|
T Consensus        45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~------------~~~~~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v  110 (347)
T 3hfq_A           45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQT------------AHKLNTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTA  110 (347)
T ss_dssp             EEECTTCE-EEEEEEETTEEEEEEEEEETTE------------EEEEEEEEEESCCCSEEEEETTTT-EEEEEETTTTEE
T ss_pred             EEEccCCe-EEEEEecCCCceEEEEEecCCc------------EEEeeeeecCCCCCEEEEECCCCC-EEEEEeCCCCEE
Confidence            46899997 6666643  6899999996411            234555556777899999999999 555666 78999


Q ss_pred             EEEEcccCCCccchhheeeeeeeEEEeccC--CcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccc-cc
Q psy4577          78 QILSVVCVEPFDDAVEERVINEEYKIWKKN--TPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNT-PF  150 (384)
Q Consensus        78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~-~~  150 (384)
                      ++|++......          ..+......  .+..      ......+.+++|+|+|+.++    ++.+.+|++.. ..
T Consensus       111 ~v~~~~~~g~~----------~~~~~~~~~~~~p~~------~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~  174 (347)
T 3hfq_A          111 EVMKIAADGAL----------TLTDTVQHSGHGPRP------EQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ  174 (347)
T ss_dssp             EEEEECTTSCE----------EEEEEEECCCCCSST------TCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC
T ss_pred             EEEEeCCCCCe----------eecceeecCCCCCCc------cccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc
Confidence            99999632110          000000000  0000      00122467899999998333    55677776541 11


Q ss_pred             ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577         151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS  230 (384)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  230 (384)
                      +.                                               .+..+                          
T Consensus       175 ~~-----------------------------------------------~~~~~--------------------------  181 (347)
T 3hfq_A          175 LS-----------------------------------------------EQSVL--------------------------  181 (347)
T ss_dssp             EE-----------------------------------------------EEEEE--------------------------
T ss_pred             EE-----------------------------------------------EeeeE--------------------------
Confidence            10                                               00000                          


Q ss_pred             CCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC------CceEEEE
Q psy4577         231 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ------KEGYGLS  304 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~------~~i~~~~  304 (384)
                               .......+..++|+|+|+.+++++..++.|++|++...      .+....+..+....      ..+..++
T Consensus       182 ---------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~i~  246 (347)
T 3hfq_A          182 ---------TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ------TGAFTQLGIVKTIPADYTAHNGAAAIR  246 (347)
T ss_dssp             ---------ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT------TTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred             ---------EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC------CCceEEeeeeeecCCCCCCCCcceeEE
Confidence                     00111245679999999756666778899999998621      12222222332222      3588999


Q ss_pred             eCCCCCCeE-EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         305 WNPSLNGYL-LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       305 ~s~~~~~~l-~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      |+|+| ++| ++...++.|.+|++....    .+..+..+..+...+.+++|+|+++.+...+
T Consensus       247 ~spdG-~~l~v~~~~~~~v~v~~~~~~g----~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          247 LSHDG-HFLYVSNRGYNTLAVFAVTADG----HLTLIQQISTEGDFPRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             ECTTS-CEEEEEEETTTEEEEEEECGGG----CEEEEEEEECSSSCCCEEEECTTSSEEEEEE
T ss_pred             ECCCC-CEEEEEeCCCCEEEEEEECCCC----cEEEeEEEecCCCCcCeEEECCCCCEEEEEE
Confidence            99999 655 667779999999997321    1115556666667789999999999766554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.84  E-value=2.8e-19  Score=175.60  Aligned_cols=317  Identities=9%  Similarity=-0.002  Sum_probs=188.6

Q ss_pred             CCCCCCCCceEEEeeCC------CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccce-------EEEEEccCCCcE
Q psy4577           1 VQWSPHNETILASSGTD------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI-------SDFSWNPNEPWV   67 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V-------~~l~~~~~~~~~   67 (384)
                      ++|||||+ .||.++.+      ..|++||+..               .....+.+|...+       .+++|+|||+ +
T Consensus        58 ~~~SPDG~-~la~~s~~~~~~~~~~i~~~d~~~---------------g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~-l  120 (1045)
T 1k32_A           58 ARFFPDGR-KIAIRVMRGSSLNTADLYFYNGEN---------------GEIKRITYFSGKSTGRRMFTDVAGFDPDGN-L  120 (1045)
T ss_dssp             EEECTTSS-EEEEEEEESTTCCEEEEEEEETTT---------------TEEEECCCCCEEEETTEECSEEEEECTTCC-E
T ss_pred             eEECCCCC-EEEEEEeeccCCCCCeEEEEECCC---------------CCeEEcccCCCcccccccccccccCCCCCE-E
Confidence            37999998 67877543      3799999875               2245667888888       9999999999 8


Q ss_pred             EEEEecC------CeEEEEEcccCCCc--cchh-----------------------------------------------
Q psy4577          68 ICSVSED------NIMQILSVVCVEPF--DDAV-----------------------------------------------   92 (384)
Q Consensus        68 l~s~s~D------~~i~vwd~~~~~~~--~~~~-----------------------------------------------   92 (384)
                      +++++.+      ..|.+|++.+++..  ....                                               
T Consensus       121 l~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~  200 (1045)
T 1k32_A          121 IISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV  200 (1045)
T ss_dssp             EEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE
T ss_pred             EEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECc
Confidence            8888755      35777777654210  0000                                               


Q ss_pred             ------------heee-----eeeeEEEeccC--CcccccceeeeeeccCeeEEEEecCceeee---cceeeeecccccc
Q psy4577          93 ------------EERV-----INEEYKIWKKN--TPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPF  150 (384)
Q Consensus        93 ------------~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~  150 (384)
                                  ....     .++...+|...  +... ..+..|   ..+...+|+|+|+.++   ++.+.+|+.....
T Consensus       201 ~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~-~~l~~~---~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~  276 (1045)
T 1k32_A          201 DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-RKHTSF---TDYYPRHLNTDGRRILFSKGGSIYIFNPDTEK  276 (1045)
T ss_dssp             CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-EECCCC---CSSCEEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred             CCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcc-eEecCC---CCcceeeEcCCCCEEEEEeCCEEEEecCCceE
Confidence                        0000     01122334321  1111 112222   2355779999998776   8999999984433


Q ss_pred             ccceeeccc---------ccccceeeeec-cCCCCCCCC-ccceeEEEEeeecc-----CCCCeEEEEEeecCCCCcccc
Q psy4577         151 LYDLVMTHA---------LEWPSLTAQWL-PDVTRPEGK-DYSIHRLILGTHTS-----DEQNHLLIASVQLPNEDAQFD  214 (384)
Q Consensus       151 ~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~  214 (384)
                      +. .+....         .......+.|. |++...... ...+  ........     .......+..+.++ ++..+.
T Consensus       277 l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~  352 (1045)
T 1k32_A          277 IE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQA--FIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFI  352 (1045)
T ss_dssp             EE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEE--EEECTTSSBEEECSCCSCEEEEEECSS-SEEEEE
T ss_pred             ee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEE--EEEcCCCCceEEccCCCcceEEeeeEc-CCCeEE
Confidence            32 111110         00123456677 665311000 0000  00000000     01111245666666 554444


Q ss_pred             cccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec
Q psy4577         215 ASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR  294 (384)
Q Consensus       215 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  294 (384)
                      ....+.  ..+.. ....... ......|...+..++|+|+|+ +|++++.++.|++||+.        .+..  ...+.
T Consensus       353 ~~s~~~--~l~~~-~d~~~~~-~~~l~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~--------tg~~--~~~~~  417 (1045)
T 1k32_A          353 HGTREG--DFLGI-YDYRTGK-AEKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLE--------TGKP--TVIER  417 (1045)
T ss_dssp             EEETTE--EEEEE-EETTTCC-EEECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETT--------TCCE--EEEEE
T ss_pred             EEECCC--ceEEE-EECCCCC-ceEecCCccceeeeEECCCCC-EEEEECCCCeEEEEECC--------CCce--EEecc
Confidence            322211  11100 0111111 222336778899999999996 89999999999999986        3433  33455


Q ss_pred             CCCCceEEEEeCCCCCCeEEEeeCCC----------cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccc
Q psy4577         295 GHQKEGYGLSWNPSLNGYLLSASDDH----------TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADP  364 (384)
Q Consensus       295 ~h~~~i~~~~~s~~~~~~l~s~s~Dg----------~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  364 (384)
                      +|...+.+++||||| ++|++++.++          .|++||+.++        .+..+..|...+..++|+|+|+.+..
T Consensus       418 ~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--------~~~~l~~~~~~~~~~~~spdG~~l~~  488 (1045)
T 1k32_A          418 SREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGR--------KIFAATTENSHDYAPAFDADSKNLYY  488 (1045)
T ss_dssp             CSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTT--------EEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             CCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCC--------cEEEeeCCCcccCCceEcCCCCEEEE
Confidence            788899999999999 7888887754          9999999876        44566778888999999999997665


Q ss_pred             cc
Q psy4577         365 VC  366 (384)
Q Consensus       365 ~c  366 (384)
                      ..
T Consensus       489 ~s  490 (1045)
T 1k32_A          489 LS  490 (1045)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.83  E-value=2.1e-18  Score=148.23  Aligned_cols=274  Identities=12%  Similarity=0.063  Sum_probs=152.4

Q ss_pred             CCCCCCCCceEEEeeCC-CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      ++|+|+++ +|++++.+ +.|++|++....          ...+.+..+..+. .+.+++|+|+++.+++++..++.|.+
T Consensus        43 ~~~spdg~-~l~~~~~~~~~v~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~  110 (343)
T 1ri6_A           43 MVVSPDKR-YLYVGVRPEFRVLAYRIAPDD----------GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSV  110 (343)
T ss_dssp             EEECTTSS-EEEEEETTTTEEEEEEECTTT----------CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEECCCCC-EEEEeecCCCeEEEEEecCCC----------CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEE
Confidence            46999998 56666665 999999997211          1123444444444 78999999999955555556899999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccc-ccccc
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNT-PFLYD  153 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~-~~~~~  153 (384)
                      ||+..+...          .....           +.   ....+.+++|+|+++.++     ++.+.+|++.. .....
T Consensus       111 ~d~~~~~~~----------~~~~~-----------~~---~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  166 (343)
T 1ri6_A          111 TRLEDGLPV----------GVVDV-----------VE---GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  166 (343)
T ss_dssp             EEEETTEEE----------EEEEE-----------EC---CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             EECCCCccc----------ccccc-----------cc---CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceee
Confidence            999522000          00111           11   123467899999998665     68899999875 33221


Q ss_pred             ee---ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577         154 LV---MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS  230 (384)
Q Consensus       154 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  230 (384)
                      ..   ...........+.|.|+..          .+.+...   ..+.+.+..+.              ..         
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~pdg~----------~l~~~~~---~~~~i~~~~~~--------------~~---------  210 (343)
T 1ri6_A          167 QDPAEVTTVEGAGPRHMVFHPNEQ----------YAYCVNE---LNSSVDVWELK--------------DP---------  210 (343)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSS----------EEEEEET---TTTEEEEEESS--------------CT---------
T ss_pred             ecccccccCCCCCcceEEECCCCC----------EEEEEeC---CCCEEEEEEec--------------CC---------
Confidence            11   0000001112233333321          0111000   01112222211              00         


Q ss_pred             CCCceeEE-EEe------ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEE
Q psy4577         231 VSGKIEIE-IKI------NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGL  303 (384)
Q Consensus       231 ~~~~~~~~-~~~------~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  303 (384)
                       .+.+... ...      .....+..++|+|+++.+++++..++.|++||+...      .+....+..+..+.. +.++
T Consensus       211 -~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~------~~~~~~~~~~~~~~~-~~~~  282 (343)
T 1ri6_A          211 -HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED------GSVLSKEGFQPTETQ-PRGF  282 (343)
T ss_dssp             -TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT------SCCEEEEEEEECSSS-CCCE
T ss_pred             -CCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC------CCceEEeeeecCCCc-cceE
Confidence             0111111 111      112356789999999756667778999999999521      122334444554544 8899


Q ss_pred             EeCCCCCCeEEEee-CCCcEEEEecC--CCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577         304 SWNPSLNGYLLSAS-DDHTICLWDIN--ATPKENRVIDAKTIFTGHTAVVELELIERLTKK  361 (384)
Q Consensus       304 ~~s~~~~~~l~s~s-~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  361 (384)
                      +|+|+| ++|++++ .|+.|.+|++.  +++     +..+..+... ....+++|.|+.+.
T Consensus       283 ~~s~dg-~~l~~~~~~~~~v~v~~~d~~~g~-----~~~~~~~~~g-~~p~~i~~~~~~~~  336 (343)
T 1ri6_A          283 NVDHSG-KYLIAAGQKSHHISVYEIVGEQGL-----LHEKGRYAVG-QGPMWVVVNAHEGG  336 (343)
T ss_dssp             EECTTS-SEEEEECTTTCEEEEEEEETTTTE-----EEEEEEEECS-SSCCEEEEEEEC--
T ss_pred             EECCCC-CEEEEecCCCCeEEEEEEcCCCce-----eeEccccccC-CCCeeEEEEcccCC
Confidence            999998 6666666 68999999665  432     1134444332 34667888886653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.83  E-value=3.8e-19  Score=153.52  Aligned_cols=273  Identities=12%  Similarity=0.013  Sum_probs=161.3

Q ss_pred             CCCCCCCCceEEEeeC-------CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEec
Q psy4577           1 VQWSPHNETILASSGT-------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE   73 (384)
Q Consensus         1 v~fsp~~~~~lat~~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~   73 (384)
                      ++|+|+++. |++++.       ++.|.+||..+              .+....+.. ...+.+++|+|+++.++++...
T Consensus        46 ~~~s~dg~~-l~~~~~~~~~~~~~~~v~~~d~~~--------------~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~  109 (353)
T 3vgz_A           46 MAYSQQENA-LWLATSQSRKLDKGGVVYRLDPVT--------------LEVTQAIHN-DLKPFGATINNTTQTLWFGNTV  109 (353)
T ss_dssp             EEEETTTTE-EEEEECCCTTTEESEEEEEECTTT--------------CCEEEEEEE-SSCCCSEEEETTTTEEEEEETT
T ss_pred             eEECCCCCE-EEEEcCCCcCCCCCccEEEEcCCC--------------CeEEEEEec-CCCcceEEECCCCCEEEEEecC
Confidence            468999974 555543       67899999976              244444433 2357889999999967777777


Q ss_pred             CCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee------cceeeeeccc
Q psy4577          74 DNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI------NEEYKIWKKN  147 (384)
Q Consensus        74 D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------d~~v~~w~~~  147 (384)
                      ++.|.+||+.+++..             ..+.......    ........+.+++|+|+++.++      ++.+.+||..
T Consensus       110 ~~~v~~~d~~~~~~~-------------~~~~~~~~~~----~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~  172 (353)
T 3vgz_A          110 NSAVTAIDAKTGEVK-------------GRLVLDDRKR----TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG  172 (353)
T ss_dssp             TTEEEEEETTTCCEE-------------EEEESCCCCC----CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred             CCEEEEEeCCCCeeE-------------EEEecCCCcc----ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence            899999999875221             1111111000    0000001246799999998765      5678999987


Q ss_pred             cccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCC
Q psy4577         148 TPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGG  227 (384)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~  227 (384)
                      +......+.....  ....+.+.++..          .+.+...    .+.+.+                +|..      
T Consensus       173 ~~~~~~~~~~~~~--~~~~~~~s~dg~----------~l~~~~~----~~~i~~----------------~d~~------  214 (353)
T 3vgz_A          173 NIKLKTAIQNTGK--MSTGLALDSEGK----------RLYTTNA----DGELIT----------------IDTA------  214 (353)
T ss_dssp             TTEEEEEECCCCT--TCCCCEEETTTT----------EEEEECT----TSEEEE----------------EETT------
T ss_pred             CCceEEEecCCCC--ccceEEECCCCC----------EEEEEcC----CCeEEE----------------EECC------
Confidence            6554333221111  012233333321          0111110    111111                1111      


Q ss_pred             ccCCCCceeEEEEe---ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEE
Q psy4577         228 FGSVSGKIEIEIKI---NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLS  304 (384)
Q Consensus       228 ~~~~~~~~~~~~~~---~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  304 (384)
                          .+........   ++...+.+++|+|+++.++++...++.|.+||..        .+..  +..+..+.  ...++
T Consensus       215 ----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~--------~~~~--~~~~~~~~--~~~~~  278 (353)
T 3vgz_A          215 ----DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR--------NGNI--LAKVAAPE--SLAVL  278 (353)
T ss_dssp             ----TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT--------TCCE--EEEEECSS--CCCEE
T ss_pred             ----CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC--------CCcE--EEEEEcCC--CceEE
Confidence                1111111111   2455688899999997566666667999999986        3332  22333322  25799


Q ss_pred             eCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccc
Q psy4577         305 WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       305 ~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      |+|++..++++...++.|.+||..+++       .+..+... ..+.+++|+|+++.+...+..
T Consensus       279 ~s~dg~~l~v~~~~~~~v~~~d~~~~~-------~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          279 FNPARNEAYVTHRQAGKVSVIDAKSYK-------VVKTFDTP-THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTTE-------EEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred             ECCCCCEEEEEECCCCeEEEEECCCCe-------EEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence            999983355566679999999999887       66666543 468999999999976655543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=2.5e-18  Score=162.39  Aligned_cols=101  Identities=11%  Similarity=0.096  Sum_probs=73.1

Q ss_pred             eEEEEEcC--CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEE-EEeCCCCCCeEE-EeeCCC--
Q psy4577         247 VNRARYMP--QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG-LSWNPSLNGYLL-SASDDH--  320 (384)
Q Consensus       247 v~~v~~~p--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~s~~~~~~l~-s~s~Dg--  320 (384)
                      +..++|+|  +|+ ++++++.|+.++||++..       .+  ..+..+..|...+.. ++|+|++ +.|+ +++.++  
T Consensus       312 ~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~-------~~--~~~~~l~~~~~~v~~~~~~spdg-~~l~~~~~~~~~~  380 (706)
T 2z3z_A          312 LHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDT-------TG--RLIRQVTKGEWEVTNFAGFDPKG-TRLYFESTEASPL  380 (706)
T ss_dssp             CSCCEECTTCSSE-EEEEECTTSSCEEEEEET-------TS--CEEEECCCSSSCEEEEEEECTTS-SEEEEEESSSCTT
T ss_pred             cCCceeecCCCCE-EEEEEccCCccEEEEEEC-------CC--CEEEecCCCCeEEEeeeEEcCCC-CEEEEEecCCCCc
Confidence            46789999  995 899999999999998852       12  234566777777877 8999998 5554 455555  


Q ss_pred             --cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         321 --TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       321 --~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                        .|+.||+.+++        ...+. |...+.+++|+|+++.++..|.
T Consensus       381 ~~~l~~~d~~~~~--------~~~l~-~~~~~~~~~~spdg~~l~~~~~  420 (706)
T 2z3z_A          381 ERHFYCIDIKGGK--------TKDLT-PESGMHRTQLSPDGSAIIDIFQ  420 (706)
T ss_dssp             CBEEEEEETTCCC--------CEESC-CSSSEEEEEECTTSSEEEEEEE
T ss_pred             eEEEEEEEcCCCC--------ceecc-CCCceEEEEECCCCCEEEEEec
Confidence              66666776653        22333 6677999999999998776654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=1.9e-18  Score=159.46  Aligned_cols=253  Identities=11%  Similarity=0.017  Sum_probs=156.8

Q ss_pred             CCCCCCCCceEEEeeC-CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccc-cceEEEEEccCCCcEEEEEec---CC
Q psy4577           1 VQWSPHNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFSWNPNEPWVICSVSE---DN   75 (384)
Q Consensus         1 v~fsp~~~~~lat~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~~l~s~s~---D~   75 (384)
                      ++|+|||+ .||.++. ||+++||++..              .+... +..|. ..|.+++|+|+ + ++++++.   +.
T Consensus        27 ~~~~~DG~-~la~~s~~~g~~~lw~~~~--------------g~~~~-lt~~~~~~~~~~~~spd-~-~l~~~~~~~g~~   88 (582)
T 3o4h_A           27 LQGVVDGD-KLLVVGFSEGSVNAYLYDG--------------GETVK-LNREPINSVLDPHYGVG-R-VILVRDVSKGAE   88 (582)
T ss_dssp             EEEEETTT-EEEEEEEETTEEEEEEEET--------------TEEEE-CCSSCCSEECEECTTCS-E-EEEEEECSTTSC
T ss_pred             eecCCCCC-eEEEEEccCCceeEEEEcC--------------CCcEe-eecccccccccccCCCC-e-EEEEeccCCCCc
Confidence            46899998 6888776 99999999854              23333 33444 68999999999 5 7777775   56


Q ss_pred             eEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccc
Q psy4577          76 IMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPF  150 (384)
Q Consensus        76 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~  150 (384)
                      ..++|.+...                   +......  ...    .......+|+|+++.++     ++.+.+|++.+..
T Consensus        89 ~~~l~~~~~~-------------------~~g~~~~--l~~----~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~  143 (582)
T 3o4h_A           89 QHALFKVNTS-------------------RPGEEQR--LEA----VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG  143 (582)
T ss_dssp             CEEEEEEETT-------------------STTCCEE--CTT----SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred             ceEEEEEecc-------------------CCCcccc--ccC----CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence            6777766430                   0000000  000    11223568888886543     4555699887665


Q ss_pred             ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccC
Q psy4577         151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGS  230 (384)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  230 (384)
                      ...+....     .....|.|++.          .+............+.+                +|...        
T Consensus       144 ~~~l~~~~-----~~~~~~spDG~----------~la~~~~~~~~~~~i~~----------------~d~~~--------  184 (582)
T 3o4h_A          144 LRELARLP-----GFGFVSDIRGD----------LIAGLGFFGGGRVSLFT----------------SNLSS--------  184 (582)
T ss_dssp             EEEEEEES-----SCEEEEEEETT----------EEEEEEEEETTEEEEEE----------------EETTT--------
T ss_pred             EEEeecCC-----CceEEECCCCC----------EEEEEEEcCCCCeEEEE----------------EcCCC--------
Confidence            43332211     13455555543          11111111000011111                11111        


Q ss_pred             CCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCC--cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEE----
Q psy4577         231 VSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSS--DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLS----  304 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~----  304 (384)
                        +.  ...+..|.+.+..++|+|+|+ .|+++..++  .|++||+.        .+..  . .+.+|...+..++    
T Consensus       185 --g~--~~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~i~~~d~~--------~~~~--~-~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          185 --GG--LRVFDSGEGSFSSASISPGMK-VTAGLETAREARLVTVDPR--------DGSV--E-DLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             --CC--CEEECCSSCEEEEEEECTTSC-EEEEEECSSCEEEEEECTT--------TCCE--E-ECCCSCSHHHHHCCSEE
T ss_pred             --CC--ceEeecCCCccccceECCCCC-EEEEccCCCeeEEEEEcCC--------CCcE--E-EccCCCcChhhhhhccc
Confidence              11  224457888899999999996 777888888  89999985        3332  2 5667777777777    


Q ss_pred             ----eCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         305 ----WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       305 ----~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                          |+||| .++++++.|+++++|++  ++       ....   +.+.|.+++|+ ++..+.+.
T Consensus       249 ~~~~~spdg-~~~~~~~~~g~~~l~~~--g~-------~~~~---~~~~v~~~~~s-dg~~l~~~  299 (582)
T 3o4h_A          249 TWLGYLPDG-RLAVVARREGRSAVFID--GE-------RVEA---PQGNHGRVVLW-RGKLVTSH  299 (582)
T ss_dssp             EEEEECTTS-CEEEEEEETTEEEEEET--TE-------EECC---CSSEEEEEEEE-TTEEEEEE
T ss_pred             cceeEcCCC-cEEEEEEcCCcEEEEEE--CC-------eecc---CCCceEEEEec-CCEEEEEE
Confidence                99999 89999999999999999  44       3332   34678899999 88765443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.80  E-value=1.8e-19  Score=170.60  Aligned_cols=226  Identities=12%  Similarity=0.105  Sum_probs=146.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccccc---ceEEEEEccCCCcEEEEEec----
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA---KISDFSWNPNEPWVICSVSE----   73 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~---~V~~l~~~~~~~~~l~s~s~----   73 (384)
                      ++|+|++. +++++ .|++|++||+.+              .+....+.+|..   .|.+++|||||+ .|++++.    
T Consensus        21 ~~~s~dg~-~~~~~-~d~~i~~~~~~~--------------g~~~~~~~~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~   83 (719)
T 1z68_A           21 PNWISGQE-YLHQS-ADNNIVLYNIET--------------GQSYTILSNRTMKSVNASNYGLSPDRQ-FVYLESDYSKL   83 (719)
T ss_dssp             CEESSSSE-EEEEC-TTSCEEEEESSS--------------CCEEEEECHHHHHTTTCSEEEECTTSS-EEEEEEEEEEC
T ss_pred             cEECCCCe-EEEEc-CCCCEEEEEcCC--------------CcEEEEEccccccccceeeEEECCCCC-eEEEEecCcee
Confidence            47999994 66655 699999999986              233444455543   389999999999 6667665    


Q ss_pred             -----CCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeec
Q psy4577          74 -----DNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWK  145 (384)
Q Consensus        74 -----D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~  145 (384)
                           |++|++||+.+++...                  ...+         ...+..++|+|||+.++   ++.+++|+
T Consensus        84 ~~~s~~~~i~~~d~~~g~~~~------------------~~~l---------~~~~~~~~~SPDG~~la~~~~~~i~~~~  136 (719)
T 1z68_A           84 WRYSYTATYYIYDLSNGEFVR------------------GNEL---------PRPIQYLCWSPVGSKLAYVYQNNIYLKQ  136 (719)
T ss_dssp             SSSCEEEEEEEEETTTTEECC------------------SSCC---------CSSBCCEEECSSTTCEEEEETTEEEEES
T ss_pred             EEeecceEEEEEECCCCcccc------------------ceec---------CcccccceECCCCCEEEEEECCeEEEEe
Confidence                 7999999998752100                  0001         13467899999999887   88999998


Q ss_pred             cccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCC
Q psy4577         146 KNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDF  225 (384)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~  225 (384)
                      ..+.....+......                                    ..  +                        
T Consensus       137 ~~~g~~~~l~~~~~~------------------------------------~~--v------------------------  154 (719)
T 1z68_A          137 RPGDPPFQITFNGRE------------------------------------NK--I------------------------  154 (719)
T ss_dssp             STTSCCEECCCCCBT------------------------------------TT--E------------------------
T ss_pred             CCCCCcEEEecCCCc------------------------------------CC--e------------------------
Confidence            865443211000000                                    00  0                        


Q ss_pred             CCccCCCCceeEEEEeecC---------CceEEEEEcCCCCcEEEEEeCCC-----------------------------
Q psy4577         226 GGFGSVSGKIEIEIKINHE---------GEVNRARYMPQNPCVIATKTPSS-----------------------------  267 (384)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~---------~~v~~v~~~p~~~~~l~s~s~dg-----------------------------  267 (384)
                                    ..++.         +...+++|+|+|+ .||+++.|.                             
T Consensus       155 --------------~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~  219 (719)
T 1z68_A          155 --------------FNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA  219 (719)
T ss_dssp             --------------EESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS
T ss_pred             --------------EcccccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC
Confidence                          00111         2235788888886 677666442                             


Q ss_pred             -----cEEEEecCCCCCCCCCCCCcc---ce---eeecCCCCceEEEEeCCCCCCeEEEeeCC----CcEEEEe----cC
Q psy4577         268 -----DVLVFDYTKHPSKPDPNGECH---PD---LRLRGHQKEGYGLSWNPSLNGYLLSASDD----HTICLWD----IN  328 (384)
Q Consensus       268 -----~i~iwd~~~~~~~~~~~~~~~---~~---~~~~~h~~~i~~~~~s~~~~~~l~s~s~D----g~i~iwd----~~  328 (384)
                           .|++||+.        .+...   .+   ..+.+|...+.+++||||+ +++++....    ..|++||    +.
T Consensus       220 ~~~~~~l~~~d~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~  290 (719)
T 1z68_A          220 KNPVVRIFIIDTT--------YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQ  290 (719)
T ss_dssp             CCCEEEEEEEESS--------CHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred             CCCeeEEEEEECC--------CCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCC
Confidence                 78899985        22211   11   1245788899999999997 677775433    2488899    77


Q ss_pred             CCCCCCccccceeee----eccCCcEe-----EEEEecCCCccc
Q psy4577         329 ATPKENRVIDAKTIF----TGHTAVVE-----LELIERLTKKAD  363 (384)
Q Consensus       329 ~~~~~~~~~~~~~~~----~~h~~~v~-----~~~~sp~~~~~~  363 (384)
                      +++       +...+    .+|...|.     .+.|+|||+.+.
T Consensus       291 ~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  327 (719)
T 1z68_A          291 TWD-------CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY  327 (719)
T ss_dssp             SEE-------CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred             CCc-------eEEEEecccccCCceEccccCCccEECCCCCeEE
Confidence            665       44444    46777777     899999998654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.80  E-value=1.5e-17  Score=142.43  Aligned_cols=255  Identities=10%  Similarity=0.027  Sum_probs=149.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-c----cccceEEEEEccCCCcEEEEEe---
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-G----HTAKISDFSWNPNEPWVICSVS---   72 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-g----h~~~V~~l~~~~~~~~~l~s~s---   72 (384)
                      ++|+|+++.++++++.++.|.+||+.+.              +.+..+. +    |...+.+++|+|+++ .|++++   
T Consensus        39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~  103 (337)
T 1pby_B           39 PMVAPGGRIAYATVNKSESLVKIDLVTG--------------ETLGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPV  103 (337)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTC--------------CEEEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEE
T ss_pred             eEEcCCCCEEEEEeCCCCeEEEEECCCC--------------CeEeeEEcCCcccccccccceEECCCCC-EEEEEeccc
Confidence            4689999766677777899999999762              3333222 2    223677899999998 555554   


Q ss_pred             ---------cCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee--ccee
Q psy4577          73 ---------EDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI--NEEY  141 (384)
Q Consensus        73 ---------~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--d~~v  141 (384)
                               .++.|.+||+.+++.             ......              ...+.+++|+|+++.++  ++.+
T Consensus       104 ~~~~~~~~~~~~~i~v~d~~~~~~-------------~~~~~~--------------~~~~~~~~~s~dg~~l~~~~~~i  156 (337)
T 1pby_B          104 RLELTHFEVQPTRVALYDAETLSR-------------RKAFEA--------------PRQITMLAWARDGSKLYGLGRDL  156 (337)
T ss_dssp             EECSSCEEECCCEEEEEETTTTEE-------------EEEEEC--------------CSSCCCEEECTTSSCEEEESSSE
T ss_pred             ccccccccccCceEEEEECCCCcE-------------EEEEeC--------------CCCcceeEECCCCCEEEEeCCeE
Confidence                     579999999976411             111110              22356789999998766  8899


Q ss_pred             eeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe-EEEEEeecCCCCccc------c
Q psy4577         142 KIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH-LLIASVQLPNEDAQF------D  214 (384)
Q Consensus       142 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~------~  214 (384)
                      .+||..+......+.......   ...+.|+....-....             ..+. ...........+...      .
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (337)
T 1pby_B          157 HVMDPEAGTLVEDKPIQSWEA---ETYAQPDVLAVWNQHE-------------SSGVMATPFYTARKDIDPADPTAYRTG  220 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTT---TTBCCCBCCCCCCCCT-------------TTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred             EEEECCCCcEeeeeeccccCC---CceeCCCccEEeeecc-------------CCCceeeeeeccccccccccccccccc
Confidence            999987765543322221111   1133333221000000             0000 001111100000000      0


Q ss_pred             cccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec
Q psy4577         215 ASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR  294 (384)
Q Consensus       215 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  294 (384)
                      +..+|...          +.........+...+.+++|+|+++ +++++  ++.|++||+.        .+.  .+..+.
T Consensus       221 v~~~d~~~----------~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~--~~~v~~~d~~--------~~~--~~~~~~  277 (337)
T 1pby_B          221 LLTMDLET----------GEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLE--------KNA--SIKRVP  277 (337)
T ss_dssp             EEEEETTT----------CCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETT--------TTE--EEEEEE
T ss_pred             eEEEeCCC----------CCceEeecCCCCCceeeEEECCCCC-EEEEe--CCeEEEEECC--------CCc--Ccceec
Confidence            11122111          2222233345667788999999996 66666  7899999985        332  233333


Q ss_pred             CCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec
Q psy4577         295 GHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG  345 (384)
Q Consensus       295 ~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  345 (384)
                      . ...+.+++|+|+| ++|++++.|+.|++||+.+++       .+..+..
T Consensus       278 ~-~~~~~~~~~s~dg-~~l~~~~~~~~i~v~d~~~~~-------~~~~~~~  319 (337)
T 1pby_B          278 L-PHSYYSVNVSTDG-STVWLGGALGDLAAYDAETLE-------KKGQVDL  319 (337)
T ss_dssp             C-SSCCCEEEECTTS-CEEEEESBSSEEEEEETTTCC-------EEEEEEC
T ss_pred             C-CCceeeEEECCCC-CEEEEEcCCCcEEEEECcCCc-------EEEEEEc
Confidence            2 3457899999999 688888999999999999987       6666653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.80  E-value=6.5e-18  Score=144.54  Aligned_cols=239  Identities=10%  Similarity=0.052  Sum_probs=136.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCee-EEEecccccceEEEEEccCCCcEEEEEecC-C--e
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL-LFIHGGHTAKISDFSWNPNEPWVICSVSED-N--I   76 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D-~--~   76 (384)
                      ++|+|+++.+++++..++.|.+||+.+.              ++ ...+..+..+..+++|+|+++ .|+++..+ +  .
T Consensus        45 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~--------------~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~  109 (331)
T 3u4y_A           45 TAITSDCSNVVVTSDFCQTLVQIETQLE--------------PPKVVAIQEGQSSMADVDITPDDQ-FAVTVTGLNHPFN  109 (331)
T ss_dssp             EEECSSSCEEEEEESTTCEEEEEECSSS--------------SCEEEEEEECSSCCCCEEECTTSS-EEEECCCSSSSCE
T ss_pred             EEEcCCCCEEEEEeCCCCeEEEEECCCC--------------ceeEEecccCCCCccceEECCCCC-EEEEecCCCCccc
Confidence            4789999855555555899999999862              33 455566666666699999999 55554444 3  9


Q ss_pred             EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cce-eeeecccccc
Q psy4577          77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEE-YKIWKKNTPF  150 (384)
Q Consensus        77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~-v~~w~~~~~~  150 (384)
                      |.+||+.+++.             +....              ......+++|+|+|+.++     ++. +.+|++....
T Consensus       110 i~v~d~~~~~~-------------~~~~~--------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g  162 (331)
T 3u4y_A          110 MQSYSFLKNKF-------------ISTIP--------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG  162 (331)
T ss_dssp             EEEEETTTTEE-------------EEEEE--------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred             EEEEECCCCCe-------------EEEEE--------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence            99999977511             11110              122356899999998665     466 8999876432


Q ss_pred             cc-cee-ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccc-ccCcCCCCCC
Q psy4577         151 LY-DLV-MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASN-YDTDKGDFGG  227 (384)
Q Consensus       151 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~~  227 (384)
                      .. ... ........                                     ...+.++++++.+.+.. .+.....|..
T Consensus       163 ~~~~~~~~~~~~~~~-------------------------------------~~~~~~spdg~~l~v~~~~~~~v~v~d~  205 (331)
T 3u4y_A          163 VLFDTGQEFISGGTR-------------------------------------PFNITFTPDGNFAFVANLIGNSIGILET  205 (331)
T ss_dssp             CEEEEEEEEECSSSS-------------------------------------EEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             cEeecCCccccCCCC-------------------------------------ccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence            11 110 00000000                                     12222333322221111 1111111111


Q ss_pred             ccCCCCce-eEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC----CC---c
Q psy4577         228 FGSVSGKI-EIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH----QK---E  299 (384)
Q Consensus       228 ~~~~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h----~~---~  299 (384)
                         ..+.. ...........+..++|+|+++.++++...++.|.+||+.        ++....+..+..+    ..   .
T Consensus       206 ---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~--------~~~~~~~~~~~~~~~~~~~~~~~  274 (331)
T 3u4y_A          206 ---QNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL--------SGTLSFVKSFGHGLLIDPRPLFG  274 (331)
T ss_dssp             ---SSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETT--------TTEEEEEEEEECCCCCCCGGGTT
T ss_pred             ---CCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECC--------CCceeeecccccccccCCCCccc
Confidence               01111 1122233456778999999997555666668899999986        3433223222222    22   2


Q ss_pred             eEEEEeCCCCCCeE-EEeeCCCcEEEEecCCC
Q psy4577         300 GYGLSWNPSLNGYL-LSASDDHTICLWDINAT  330 (384)
Q Consensus       300 i~~~~~s~~~~~~l-~s~s~Dg~i~iwd~~~~  330 (384)
                      ...++|+|++ ++| +++..++.|.+||+...
T Consensus       275 ~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          275 ANQMALNKTE-TKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             CCCEEECTTS-SEEEEEETTTTEEEEEETTSC
T ss_pred             ccceEECCCC-CEEEEecCCCCcEEEEEecCC
Confidence            3568999999 565 45556779999999865

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.80  E-value=1.2e-18  Score=154.01  Aligned_cols=80  Identities=20%  Similarity=0.300  Sum_probs=59.4

Q ss_pred             CCCCCCCCceEE----EeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCe
Q psy4577           1 VQWSPHNETILA----SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI   76 (384)
Q Consensus         1 v~fsp~~~~~la----t~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~   76 (384)
                      |+|+|++. +||    +|+.|++|+|||+.+.....   .....+...+..+.+|.+.|.+++|+|++..+|++++.||+
T Consensus        98 l~~spdg~-~lav~~~sgs~d~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~  173 (434)
T 2oit_A           98 LALSCDNL-TLSACMMSSEYGSIIAFFDVRTFSNEA---KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS  173 (434)
T ss_dssp             EEECTTSC-EEEEEEEETTTEEEEEEEEHHHHHCTT---CSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred             EEEcCCCC-EEEEEEeccCCCceEEEEEccccccCC---cCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence            47999997 677    88999999999986521000   00001122356677899999999999985448999999999


Q ss_pred             EEEEEccc
Q psy4577          77 MQILSVVC   84 (384)
Q Consensus        77 i~vwd~~~   84 (384)
                      |++||+.+
T Consensus       174 v~iwD~~~  181 (434)
T 2oit_A          174 IAVLQVTE  181 (434)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEcCC
Confidence            99999865

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=2.8e-16  Score=136.07  Aligned_cols=256  Identities=11%  Similarity=0.077  Sum_probs=144.7

Q ss_pred             CCCCCCCCceEEEeeCC----CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCe
Q psy4577           1 VQWSPHNETILASSGTD----RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI   76 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~   76 (384)
                      ++|+|+++ +|++++.+    +.|.+|++....          +..+.+.....+......+++  +++.++++...+++
T Consensus        55 l~~spdg~-~l~~~~~~~~~~~~v~~~~~~~~~----------g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~  121 (361)
T 3scy_A           55 LIPSADGK-FVYSVNEFSKDQAAVSAFAFDKEK----------GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGS  121 (361)
T ss_dssp             EEECTTSS-EEEEEECCSSTTCEEEEEEEETTT----------TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTE
T ss_pred             EEECCCCC-EEEEEEccCCCCCcEEEEEEeCCC----------CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCE
Confidence            47899997 67777765    799999987521          112334444445556778888  77745544446899


Q ss_pred             EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccc
Q psy4577          77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFL  151 (384)
Q Consensus        77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~  151 (384)
                      |.+|++.....+.....       ........+...     ......+.+++|+|+|+.++     ++.+.+|++.....
T Consensus       122 v~~~~~~~~g~~~~~~~-------~~~~~g~~~~~~-----~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~  189 (361)
T 3scy_A          122 ITVFPIGQDGALLPASD-------VIEFKGSGPDKE-----RQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNAN  189 (361)
T ss_dssp             EEEEEBCTTSCBCSCSE-------EEECCCCCSCTT-----TCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCC
T ss_pred             EEEEEeCCCCcCcccce-------eEEccCCCCCcc-----ccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCC
Confidence            99999975322110000       000000000000     00022356899999998664     55667765532210


Q ss_pred             cceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC
Q psy4577         152 YDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV  231 (384)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  231 (384)
                      ...   ..                                      .+...                             
T Consensus       190 ~~~---~~--------------------------------------~l~~~-----------------------------  199 (361)
T 3scy_A          190 ADN---KE--------------------------------------KFLTK-----------------------------  199 (361)
T ss_dssp             TTT---CC--------------------------------------CCEEE-----------------------------
T ss_pred             ccc---cc--------------------------------------ceeec-----------------------------
Confidence            000   00                                      00000                             


Q ss_pred             CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee---cCCCCceEEEEeCCC
Q psy4577         232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL---RGHQKEGYGLSWNPS  308 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~h~~~i~~~~~s~~  308 (384)
                       + ........+......++|+|+++.++++...++.|++|++.        .+....+..+   ..+......++|+||
T Consensus       200 -~-~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~--------~g~~~~~~~~~~~~~~~~~~~~i~~spd  269 (361)
T 3scy_A          200 -G-TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA--------DGMLDEIQTVAADTVNAQGSGDIHLSPD  269 (361)
T ss_dssp             -E-EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE--------TTEEEEEEEEESCSSCCCCEEEEEECTT
T ss_pred             -c-cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec--------CCceEEeEEEecCCCCCCCcccEEECCC
Confidence             0 00001112234467899999997444554478999999986        3433333333   333455789999999


Q ss_pred             CCCeEEEeeC--CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         309 LNGYLLSASD--DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       309 ~~~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      | ++|+.+..  +++|.+|++.....   .+..+..+.. ...+.+++|+|+++.+...+
T Consensus       270 g-~~l~v~~~~~~~~i~v~~~~~~~g---~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~  324 (361)
T 3scy_A          270 G-KYLYASNRLKADGVAIFKVDETNG---TLTKVGYQLT-GIHPRNFIITPNGKYLLVAC  324 (361)
T ss_dssp             S-SEEEEEECSSSCEEEEEEECTTTC---CEEEEEEEEC-SSCCCEEEECTTSCEEEEEE
T ss_pred             C-CEEEEECCCCCCEEEEEEEcCCCC---cEEEeeEecC-CCCCceEEECCCCCEEEEEE
Confidence            9 67755554  58999999963211   0113333433 45688999999999776554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.76  E-value=7.4e-18  Score=159.18  Aligned_cols=108  Identities=11%  Similarity=0.043  Sum_probs=79.3

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCC-----cEEEEecCCCCCCCCCCC-CccceeeecCCCC---ceEEEEeCC--CCC
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSS-----DVLVFDYTKHPSKPDPNG-ECHPDLRLRGHQK---EGYGLSWNP--SLN  310 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~-~~~~~~~~~~h~~---~i~~~~~s~--~~~  310 (384)
                      .|...+.+++|+|+|+ .|++++.|+     .|++||+.        ++ ....+.. ..+..   .+.+++|+|  +| 
T Consensus       255 ~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~--------~g~~~~~~~~-~~~~~~~~~~~~~~~sp~~dg-  323 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAE--------TGRFVRTLFV-ETDKHYVEPLHPLTFLPGSNN-  323 (706)
T ss_dssp             CTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETT--------TCCEEEEEEE-EECSSCCCCCSCCEECTTCSS-
T ss_pred             CCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECC--------CCceeeEEEE-ccCCCeECccCCceeecCCCC-
Confidence            4667799999999996 777766665     89999986        34 2222211 12222   346789999  98 


Q ss_pred             CeEEEeeCCCcEEEEecC-CCCCCCccccceeeeeccCCcEeE-EEEecCCCccccccc
Q psy4577         311 GYLLSASDDHTICLWDIN-ATPKENRVIDAKTIFTGHTAVVEL-ELIERLTKKADPVCT  367 (384)
Q Consensus       311 ~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~h~~~v~~-~~~sp~~~~~~~~c~  367 (384)
                      ++|++++.|+.++||++. .++       .+..+..|...+.. ++|+|+++.+...+.
T Consensus       324 ~~l~~~~~~g~~~l~~~~~~~~-------~~~~l~~~~~~v~~~~~~spdg~~l~~~~~  375 (706)
T 2z3z_A          324 QFIWQSRRDGWNHLYLYDTTGR-------LIRQVTKGEWEVTNFAGFDPKGTRLYFEST  375 (706)
T ss_dssp             EEEEEECTTSSCEEEEEETTSC-------EEEECCCSSSCEEEEEEECTTSSEEEEEES
T ss_pred             EEEEEEccCCccEEEEEECCCC-------EEEecCCCCeEEEeeeEEcCCCCEEEEEec
Confidence            699999999999999987 444       67777778888877 899999987655443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.75  E-value=4.3e-17  Score=139.58  Aligned_cols=254  Identities=13%  Similarity=0.048  Sum_probs=150.3

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-cccc-ceEEEEEccCCCcEEEEEecCCeEEEEEcccCCC
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTA-KISDFSWNPNEPWVICSVSEDNIMQILSVVCVEP   87 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~-~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~   87 (384)
                      +|++++.+++|.+||+.+              .+.+..+. ++.. .+.+++|+|+++.++++++.++.|.+||+.+++.
T Consensus         3 ~~v~~~~~~~v~~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~   68 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEK--------------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET   68 (337)
T ss_dssp             EEEEEETTTEEEEEETTT--------------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEEcCCCCeEEEEECCC--------------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe
Confidence            789999999999999976              24444443 3222 4789999999986777777889999999977522


Q ss_pred             ccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee--c--------------ceeeeeccccccc
Q psy4577          88 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI--N--------------EEYKIWKKNTPFL  151 (384)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--d--------------~~v~~w~~~~~~~  151 (384)
                                   +..+.....        ......+..++|+|+++.++  +              +.+.+||..+...
T Consensus        69 -------------~~~~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~  127 (337)
T 1pby_B           69 -------------LGRIDLSTP--------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR  127 (337)
T ss_dssp             -------------EEEEECCBT--------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred             -------------EeeEEcCCc--------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE
Confidence                         111111100        00012456789999997665  2              7888888866544


Q ss_pred             cceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC
Q psy4577         152 YDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV  231 (384)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  231 (384)
                      ...+...   .....+.+.|+...          +.+.      .+.+.+..+                .          
T Consensus       128 ~~~~~~~---~~~~~~~~s~dg~~----------l~~~------~~~i~~~d~----------------~----------  162 (337)
T 1pby_B          128 RKAFEAP---RQITMLAWARDGSK----------LYGL------GRDLHVMDP----------------E----------  162 (337)
T ss_dssp             EEEEECC---SSCCCEEECTTSSC----------EEEE------SSSEEEEET----------------T----------
T ss_pred             EEEEeCC---CCcceeEECCCCCE----------EEEe------CCeEEEEEC----------------C----------
Confidence            3322211   11222334433210          0000      001111111                0          


Q ss_pred             CCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCC-----------------------cEEEEecCCCCCCCCCCCCcc
Q psy4577         232 SGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSS-----------------------DVLVFDYTKHPSKPDPNGECH  288 (384)
Q Consensus       232 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg-----------------------~i~iwd~~~~~~~~~~~~~~~  288 (384)
                      .+.. ......+. ....+.|+|++..+++++..++                       .|.+||+.        .+...
T Consensus       163 ~~~~-~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--------~~~~~  232 (337)
T 1pby_B          163 AGTL-VEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE--------TGEMA  232 (337)
T ss_dssp             TTEE-EEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT--------TCCEE
T ss_pred             CCcE-eeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC--------CCCce
Confidence            0111 11111111 0112367787764444433333                       46889986        44433


Q ss_pred             ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         289 PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       289 ~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                       ...+..+...+.+++|+|++ ++|+++  ++.|++||+.+++       .+..+..+ ..+.+++|+|+++.+...
T Consensus       233 -~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~-------~~~~~~~~-~~~~~~~~s~dg~~l~~~  297 (337)
T 1pby_B          233 -MREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNA-------SIKRVPLP-HSYYSVNVSTDGSTVWLG  297 (337)
T ss_dssp             -EEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTE-------EEEEEECS-SCCCEEEECTTSCEEEEE
T ss_pred             -EeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCc-------CcceecCC-CceeeEEECCCCCEEEEE
Confidence             44556677788999999998 688877  7999999999886       66666533 467899999999966654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.75  E-value=1e-15  Score=131.66  Aligned_cols=279  Identities=9%  Similarity=-0.037  Sum_probs=152.3

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccc-cceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      +++++++. ++++++.+++|.+||+.+              .+.+..+..+. ..+..++|+|+++.+++++..++.|.+
T Consensus         5 ~~~~~~~~-~~v~~~~~~~v~~~d~~~--------------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~   69 (349)
T 1jmx_B            5 PALKAGHE-YMIVTNYPNNLHVVDVAS--------------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG   69 (349)
T ss_dssp             CCCCTTCE-EEEEEETTTEEEEEETTT--------------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccccCCCE-EEEEeCCCCeEEEEECCC--------------CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEE
Confidence            46787775 899999999999999976              35555544332 257899999999856667778899999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c------------ceeee
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N------------EEYKI  143 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d------------~~v~~  143 (384)
                      ||+.+++.             ..........   .    .....+..++|+|+|+.++    +            +.+.+
T Consensus        70 ~d~~t~~~-------------~~~~~~~~~~---~----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~  129 (349)
T 1jmx_B           70 IDLDTCKN-------------TFHANLSSVP---G----EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV  129 (349)
T ss_dssp             EETTTTEE-------------EEEEESCCST---T----EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred             EeCCCCcE-------------EEEEEccccc---c----cccccccceEECCCCCEEEEEcccccccccccccCCCeEEE
Confidence            99977521             1111110000   0    0012356899999998776    3            78999


Q ss_pred             eccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccc----------
Q psy4577         144 WKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQF----------  213 (384)
Q Consensus       144 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------  213 (384)
                      ||..+......+...........+.+.+++..-. ....+.  .+....   ..  .+..+.....+...          
T Consensus       130 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~-~~~~i~--~~d~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~  201 (349)
T 1jmx_B          130 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV-AGPDIY--KMDVKT---GK--YTVALPLRNWNRKGYSAPDVLYFW  201 (349)
T ss_dssp             EEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE-ESSSEE--EECTTT---CC--EEEEECSTTCCCTTBCCCBCCCCC
T ss_pred             EECCCccccceeeeccCCCcccceeECCCCcEEE-ccCcEE--EEeCCC---Cc--eeccccccccCCccccCccceeee
Confidence            9987644332222211111223344555542000 000000  000000   00  01111100000000          


Q ss_pred             --------------ccccccCc--------CCCCCCccCCCCceeEEEEeecCCceEEEEEcC-CCCcEEEEEeCCCcEE
Q psy4577         214 --------------DASNYDTD--------KGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP-QNPCVIATKTPSSDVL  270 (384)
Q Consensus       214 --------------~~~~~d~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~~l~s~s~dg~i~  270 (384)
                                    .....|..        ...+.......+.........+...+.+++|+| +++ +++++  ++.|+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~v~  278 (349)
T 1jmx_B          202 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNRLA  278 (349)
T ss_dssp             CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESEEE
T ss_pred             cCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCeEE
Confidence                          00000000        000000001112222222334556788999999 996 66666  88999


Q ss_pred             EEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee
Q psy4577         271 VFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT  344 (384)
Q Consensus       271 iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  344 (384)
                      +||+.        ++.  .+..+.. ...+.+++|+|++ ++|++++.++.|++||+++++       .+..+.
T Consensus       279 ~~d~~--------~~~--~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~~v~v~d~~~~~-------~~~~~~  333 (349)
T 1jmx_B          279 KYDLK--------QRK--LIKAANL-DHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDTLE-------KVKNIK  333 (349)
T ss_dssp             EEETT--------TTE--EEEEEEC-SSCCCEEEECSSS-SCEEEESBSSEEEEEETTTTE-------EEEEEE
T ss_pred             EEECc--------cCe--EEEEEcC-CCCccceEECCCC-CEEEEecCCCeEEEEeccccc-------eeeeee
Confidence            99986        332  2233332 2357799999998 677778889999999999886       665554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.75  E-value=2.9e-17  Score=137.80  Aligned_cols=225  Identities=15%  Similarity=0.123  Sum_probs=134.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccc-ccceEEEEEccCCCcEEEEEe--cCCeE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWVICSVS--EDNIM   77 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~l~~~~~~~~~l~s~s--~D~~i   77 (384)
                      ++|+|+++ +||+++ ++.|++||+.+.+             +......+| ...|.+++|+|+++ .|++++  .++..
T Consensus        47 ~~~spdg~-~l~~~~-~~~i~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~  110 (297)
T 2ojh_A           47 PNWSPDGK-YLLLNS-EGLLYRLSLAGDP-------------SPEKVDTGFATICNNDHGISPDGA-LYAISDKVEFGKS  110 (297)
T ss_dssp             EEECTTSS-EEEEEE-TTEEEEEESSSCC-------------SCEECCCTTCCCBCSCCEECTTSS-EEEEEECTTTSSC
T ss_pred             eEECCCCC-EEEEEc-CCeEEEEeCCCCC-------------CceEeccccccccccceEECCCCC-EEEEEEeCCCCcc
Confidence            47999997 688876 8899999997511             222333444 46789999999999 666777  44677


Q ss_pred             EEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccc--c
Q psy4577          78 QILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTP--F  150 (384)
Q Consensus        78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~--~  150 (384)
                      +||.+.....            ...           .+..   ...+..++|+|+++.++     ++.+++|+++..  .
T Consensus       111 ~l~~~~~~~~------------~~~-----------~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~  164 (297)
T 2ojh_A          111 AIYLLPSTGG------------TPR-----------LMTK---NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV  164 (297)
T ss_dssp             EEEEEETTCC------------CCE-----------ECCS---SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred             eEEEEECCCC------------ceE-----------Eeec---CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence            7777643100            000           0111   12367889999998776     788888886422  1


Q ss_pred             ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccc-ccCcCCCCCCcc
Q psy4577         151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASN-YDTDKGDFGGFG  229 (384)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~~~~  229 (384)
                      ... +..+  ......+.|.|+.                                     ..+.... .+.....|... 
T Consensus       165 ~~~-~~~~--~~~~~~~~~s~dg-------------------------------------~~l~~~~~~~~~~~i~~~~-  203 (297)
T 2ojh_A          165 ETR-LTHG--EGRNDGPDYSPDG-------------------------------------RWIYFNSSRTGQMQIWRVR-  203 (297)
T ss_dssp             EEE-CCCS--SSCEEEEEECTTS-------------------------------------SEEEEEECTTSSCEEEEEE-
T ss_pred             ceE-cccC--CCccccceECCCC-------------------------------------CEEEEEecCCCCccEEEEC-
Confidence            111 1111  1112334444432                                     2111111 11111111100 


Q ss_pred             CCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCC-----------CcEEEEecCCCCCCCCCCCCccceeeecCCCC
Q psy4577         230 SVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPS-----------SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK  298 (384)
Q Consensus       230 ~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~  298 (384)
                       ..+. .......|...+..++|+|+++ +|+.++.+           +.|++||+.        .+....+..+.+|..
T Consensus       204 -~~~~-~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~l~~~d~~--------~~~~~~~~~~~~~~~  272 (297)
T 2ojh_A          204 -VDGS-SVERITDSAYGDWFPHPSPSGD-KVVFVSYDADVFDHPRDLDVRVQLMDMD--------GGNVETLFDLFGGQG  272 (297)
T ss_dssp             -TTSS-CEEECCCCSEEEEEEEECTTSS-EEEEEEEETTCCSCCSSEEEEEEEEETT--------SCSCEEEEEEEESTT
T ss_pred             -CCCC-CcEEEecCCcccCCeEECCCCC-EEEEEEcCCCCCcccccCceEEEEEecC--------CCCceeeeccCCCCc
Confidence             0011 1233445667889999999996 66666655           569999986        444445556668888


Q ss_pred             ceEEEEeCCCCCCeEEEeeCCC
Q psy4577         299 EGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       299 ~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      .+.+++|+|++ .+|++++.|.
T Consensus       273 ~~~~~~~spdg-~~l~~~~~~~  293 (297)
T 2ojh_A          273 TMNSPNWSPDG-DEFAYVRYFP  293 (297)
T ss_dssp             TSCSCCBCTTS-SEEEEEEECC
T ss_pred             ccccceECCCC-CEEEEEEecc
Confidence            99999999999 6888777653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.74  E-value=5.7e-16  Score=133.38  Aligned_cols=210  Identities=10%  Similarity=0.076  Sum_probs=129.8

Q ss_pred             CCCCCCCCceEEEee-CCCeEEEeecCCcCcccccCCCCCCCCeeEEEecc---------cccceEEEEEccCCCcEEEE
Q psy4577           1 VQWSPHNETILASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG---------HTAKISDFSWNPNEPWVICS   70 (384)
Q Consensus         1 v~fsp~~~~~lat~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~g---------h~~~V~~l~~~~~~~~~l~s   70 (384)
                      ++|+|+++ +|++++ .+++|.+|++...+.           ...+..+..         +...+.+++|+|+|+ ++++
T Consensus        91 ~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~-----------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~  157 (347)
T 3hfq_A           91 VAVDEARQ-LVYSANYHKGTAEVMKIAADGA-----------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI  157 (347)
T ss_dssp             EEEETTTT-EEEEEETTTTEEEEEEECTTSC-----------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE
T ss_pred             EEECCCCC-EEEEEeCCCCEEEEEEeCCCCC-----------eeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE
Confidence            46899998 566665 789999999964221           122222211         223588999999999 8888


Q ss_pred             EecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeec
Q psy4577          71 VSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWK  145 (384)
Q Consensus        71 ~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~  145 (384)
                      ...++.|++|++.....             +....        .+.. ........++|+|+|+.++     ++.+.+|+
T Consensus       158 ~~~~~~v~~~~~~~~g~-------------~~~~~--------~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~  215 (347)
T 3hfq_A          158 DLGSDKVYVYNVSDAGQ-------------LSEQS--------VLTM-EAGFGPRHLVFSPDGQYAFLAGELSSQIASLK  215 (347)
T ss_dssp             ETTTTEEEEEEECTTSC-------------EEEEE--------EEEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eCCCCEEEEEEECCCCc-------------EEEee--------eEEc-CCCCCCceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            88899999999973100             00000        0000 0022355799999998654     56677776


Q ss_pred             cccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCC
Q psy4577         146 KNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDF  225 (384)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~  225 (384)
                      .....-. +                                            ..+..+...+                 
T Consensus       216 ~~~~~g~-~--------------------------------------------~~~~~~~~~~-----------------  233 (347)
T 3hfq_A          216 YDTQTGA-F--------------------------------------------TQLGIVKTIP-----------------  233 (347)
T ss_dssp             EETTTTE-E--------------------------------------------EEEEEEESSC-----------------
T ss_pred             ecCCCCc-e--------------------------------------------EEeeeeeecC-----------------
Confidence            5421000 0                                            0000000000                 


Q ss_pred             CCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEe
Q psy4577         226 GGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSW  305 (384)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~  305 (384)
                             ..      ......+..++|+|+|+.++++...++.|.+|++..       .+....+..+..+...+..++|
T Consensus       234 -------~~------~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~-------~g~~~~~~~~~~~~~~~~~~~~  293 (347)
T 3hfq_A          234 -------AD------YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA-------DGHLTLIQQISTEGDFPRDFDL  293 (347)
T ss_dssp             -------TT------CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG-------GGCEEEEEEEECSSSCCCEEEE
T ss_pred             -------CC------CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC-------CCcEEEeEEEecCCCCcCeEEE
Confidence                   00      001134788999999975557777899999999852       2333445566666677899999


Q ss_pred             CCCCCCeEEEeeC-CCcEEEEecC
Q psy4577         306 NPSLNGYLLSASD-DHTICLWDIN  328 (384)
Q Consensus       306 s~~~~~~l~s~s~-Dg~i~iwd~~  328 (384)
                      +|+| ++|++++. ++.|.+|++.
T Consensus       294 spdg-~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          294 DPTE-AFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             CTTS-SEEEEEETTTTEEEEEEEC
T ss_pred             CCCC-CEEEEEEcCCCcEEEEEEe
Confidence            9999 67777765 4999999554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.73  E-value=1e-16  Score=140.26  Aligned_cols=69  Identities=12%  Similarity=0.147  Sum_probs=52.6

Q ss_pred             CCCCCCCCceEEEeeC-CC--eEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeE
Q psy4577           1 VQWSPHNETILASSGT-DR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM   77 (384)
Q Consensus         1 v~fsp~~~~~lat~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i   77 (384)
                      .+|||||+ .||.++. ++  .|.+||+.+              .+......+|...+.+++|+|+|+ .|+.++.++.|
T Consensus        41 ~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~--------------g~~~~lt~~~~~~~~~~~~spdg~-~l~~~~~~~~l  104 (388)
T 3pe7_A           41 KCFTRDGS-KLLFGGAFDGPWNYYLLDLNT--------------QVATQLTEGRGDNTFGGFLSPDDD-ALFYVKDGRNL  104 (388)
T ss_dssp             CCBCTTSC-EEEEEECTTSSCEEEEEETTT--------------CEEEECCCSSCBCSSSCEECTTSS-EEEEEETTTEE
T ss_pred             ccCCCCCC-EEEEEEcCCCCceEEEEeCCC--------------CceEEeeeCCCCCccceEEcCCCC-EEEEEeCCCeE
Confidence            36999998 5666665 67  477888875              244455566666666789999999 67788889999


Q ss_pred             EEEEcccC
Q psy4577          78 QILSVVCV   85 (384)
Q Consensus        78 ~vwd~~~~   85 (384)
                      .+||+.++
T Consensus       105 ~~~d~~~g  112 (388)
T 3pe7_A          105 MRVDLATL  112 (388)
T ss_dssp             EEEETTTC
T ss_pred             EEEECCCC
Confidence            99999875

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.72  E-value=2.6e-15  Score=129.99  Aligned_cols=96  Identities=15%  Similarity=0.092  Sum_probs=64.3

Q ss_pred             ceEEEEEcCCCCcEEEEEeC-CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee-CCCcEE
Q psy4577         246 EVNRARYMPQNPCVIATKTP-SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS-DDHTIC  323 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s-~Dg~i~  323 (384)
                      ....++|+|+++.++++... ++.|.+|++...      .+....+..+.. ...+.+++|+|+| ++|++++ .++.|.
T Consensus       260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~------~g~~~~~~~~~~-g~~~~~~~~spdg-~~l~~~~~~~~~v~  331 (361)
T 3scy_A          260 GSGDIHLSPDGKYLYASNRLKADGVAIFKVDET------NGTLTKVGYQLT-GIHPRNFIITPNG-KYLLVACRDTNVIQ  331 (361)
T ss_dssp             CEEEEEECTTSSEEEEEECSSSCEEEEEEECTT------TCCEEEEEEEEC-SSCCCEEEECTTS-CEEEEEETTTTEEE
T ss_pred             CcccEEECCCCCEEEEECCCCCCEEEEEEEcCC------CCcEEEeeEecC-CCCCceEEECCCC-CEEEEEECCCCCEE
Confidence            35789999999744455545 589999998521      233334444444 4568899999999 6777776 679999


Q ss_pred             EEecC--CCCCCCccccceeee-eccCCcEeEEEEe
Q psy4577         324 LWDIN--ATPKENRVIDAKTIF-TGHTAVVELELIE  356 (384)
Q Consensus       324 iwd~~--~~~~~~~~~~~~~~~-~~h~~~v~~~~~s  356 (384)
                      +|++.  +++       ..... ..+...+.|+.|.
T Consensus       332 v~~~d~~~g~-------~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          332 IFERDQATGL-------LTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEECTTTCC-------EEECSCCEECSSEEEEEEE
T ss_pred             EEEEECCCCc-------EeecceeeeCCCCeEEEEc
Confidence            97665  443       32222 1245578899986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.70  E-value=1.4e-16  Score=151.02  Aligned_cols=106  Identities=13%  Similarity=0.121  Sum_probs=74.4

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccc-----eEEEEEccCCCcEEEEEecC-
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK-----ISDFSWNPNEPWVICSVSED-   74 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~-----V~~l~~~~~~~~~l~s~s~D-   74 (384)
                      ++|+|+++ +|+++  |++|++||+.+.              +....+.+|...     ..+++|||||+ .|+.++.+ 
T Consensus        22 ~~w~~dg~-~~~~~--~~~i~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~   83 (740)
T 4a5s_A           22 LRWISDHE-YLYKQ--ENNILVFNAEYG--------------NSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYV   83 (740)
T ss_dssp             EEECSSSE-EEEEE--TTEEEEEETTTC--------------CEEEEECTTTTTTCCSCCCEEEECTTSS-EEEEEEEEE
T ss_pred             cEECCCCc-EEEEc--CCcEEEEECCCC--------------ceEEEEechhhhhhcccccceEECCCCC-EEEEEECCe
Confidence            47999996 78886  999999999862              333445666532     34578999999 66677776 


Q ss_pred             --------CeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeee
Q psy4577          75 --------NIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKI  143 (384)
Q Consensus        75 --------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~  143 (384)
                              +.+.+||+.+++..                         .+..|  ...+...+|||||+.++   ++.+.+
T Consensus        84 ~~~r~~~~~~~~~~d~~~~~~~-------------------------~l~~~--~~~~~~~~~SPdG~~la~~~~~~i~~  136 (740)
T 4a5s_A           84 KQWRHSYTASYDIYDLNKRQLI-------------------------TEERI--PNNTQWVTWSPVGHKLAYVWNNDIYV  136 (740)
T ss_dssp             ECSSSCEEEEEEEEETTTTEEC-------------------------CSSCC--CTTEEEEEECSSTTCEEEEETTEEEE
T ss_pred             eeEEEccceEEEEEECCCCcEE-------------------------EcccC--CCcceeeEECCCCCEEEEEECCeEEE
Confidence                    45568998775110                         11112  34577899999999887   888999


Q ss_pred             eccccccc
Q psy4577         144 WKKNTPFL  151 (384)
Q Consensus       144 w~~~~~~~  151 (384)
                      |+..+...
T Consensus       137 ~~~~~~~~  144 (740)
T 4a5s_A          137 KIEPNLPS  144 (740)
T ss_dssp             ESSTTSCC
T ss_pred             EECCCCce
Confidence            98866543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.69  E-value=1.3e-15  Score=132.03  Aligned_cols=109  Identities=6%  Similarity=-0.063  Sum_probs=70.0

Q ss_pred             CCceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCCCccc----eeeec----CCCC------ceEEEE-eCC
Q psy4577         244 EGEVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHP----DLRLR----GHQK------EGYGLS-WNP  307 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~----~h~~------~i~~~~-~s~  307 (384)
                      ...+..++|+|+|+ ++++++ .++.|.+|++...      ++....    +..+.    +|..      .+..++ |+|
T Consensus       192 g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~------~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp  264 (365)
T 1jof_A          192 GDHPRWVAMHPTGN-YLYALMEAGNRICEYVIDPA------THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF  264 (365)
T ss_dssp             TCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTT------TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred             CCCCCEeEECCCCC-EEEEEECCCCeEEEEEEeCC------CCcEEEccceEEcCCCCcCCcccccccccccccEEEECC
Confidence            45578999999997 555544 5789999987521      122211    11221    2332      588999 999


Q ss_pred             CCCCeEEEeeCC-C-----cEEEEecC-CCCCCCcccccee---eeeccCCcEeEEEEec---CCCccccccc
Q psy4577         308 SLNGYLLSASDD-H-----TICLWDIN-ATPKENRVIDAKT---IFTGHTAVVELELIER---LTKKADPVCT  367 (384)
Q Consensus       308 ~~~~~l~s~s~D-g-----~i~iwd~~-~~~~~~~~~~~~~---~~~~h~~~v~~~~~sp---~~~~~~~~c~  367 (384)
                      || ++|+++..+ .     +|.+|++. +++       ...   ....+...+..++|+|   +|+.+...+.
T Consensus       265 dG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~-------~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~  329 (365)
T 1jof_A          265 SG-KYMFASSRANKFELQGYIAGFKLRDCGS-------IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             TS-SEEEEEEEESSTTSCCEEEEEEECTTSC-------EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             CC-CEEEEECCCCCCCCCCeEEEEEECCCCC-------EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc
Confidence            99 677766543 3     89999997 443       222   1333555677899999   7887766553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.68  E-value=5.3e-15  Score=145.38  Aligned_cols=267  Identities=7%  Similarity=-0.102  Sum_probs=168.0

Q ss_pred             CCCC-CCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccccc-ceEEEEEccCCCcEEEEEecCCeEE
Q psy4577           1 VQWS-PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fs-p~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~-~V~~l~~~~~~~~~l~s~s~D~~i~   78 (384)
                      ++|| |+|+ .||+++ ++.|.+|++...              . ...+..|.. .+.+++|+ +|+ .|++++.+..+.
T Consensus       301 ~~~S~pdG~-~la~~~-~~~i~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~s-dg~-~l~~~s~~~~l~  361 (1045)
T 1k32_A          301 EDFSPLDGD-LIAFVS-RGQAFIQDVSGT--------------Y-VLKVPEPLRIRYVRRGGD-TKV-AFIHGTREGDFL  361 (1045)
T ss_dssp             EEEEECGGG-CEEEEE-TTEEEEECTTSS--------------B-EEECSCCSCEEEEEECSS-SEE-EEEEEETTEEEE
T ss_pred             eeecCCCCC-EEEEEE-cCEEEEEcCCCC--------------c-eEEccCCCcceEEeeeEc-CCC-eEEEEECCCceE
Confidence            3689 9997 577776 889999998751              2 233566777 89999999 988 667778788888


Q ss_pred             -EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccc
Q psy4577          79 -ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYD  153 (384)
Q Consensus        79 -vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~  153 (384)
                       +|++.+++.              .           .+.+|  ...+.+++|+|+|+.++    ++.+++||..+.....
T Consensus       362 ~~~d~~~~~~--------------~-----------~l~~~--~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~  414 (1045)
T 1k32_A          362 GIYDYRTGKA--------------E-----------KFEEN--LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV  414 (1045)
T ss_dssp             EEEETTTCCE--------------E-----------ECCCC--CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEECCCCCc--------------e-----------EecCC--ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE
Confidence             888766310              0           11122  34678999999999887    7899999998766544


Q ss_pred             eeecccccccceeeeeccCCCCCCCCccceeEEEEeeecc------CCCCeEEEEEeecCCCCcccccccccCcCCCCCC
Q psy4577         154 LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTS------DEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGG  227 (384)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~  227 (384)
                      ....+..  +...+.|.|++.          .+.......      .....+.++.+.                .     
T Consensus       415 ~~~~~~~--~v~~~~~SpDG~----------~la~~~~~~~~~~~~~~~~~i~l~d~~----------------~-----  461 (1045)
T 1k32_A          415 IERSREA--MITDFTISDNSR----------FIAYGFPLKHGETDGYVMQAIHVYDME----------------G-----  461 (1045)
T ss_dssp             EEECSSS--CCCCEEECTTSC----------EEEEEEEECSSTTCSCCEEEEEEEETT----------------T-----
T ss_pred             eccCCCC--CccceEECCCCC----------eEEEEecCccccccCCCCCeEEEEECC----------------C-----
Confidence            4333221  234456666643          111111100      001112222111                0     


Q ss_pred             ccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC---------------------------
Q psy4577         228 FGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK---------------------------  280 (384)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~---------------------------  280 (384)
                           +.  ......|...+..++|+|+|+ .|+.++.++..++|+.......                           
T Consensus       462 -----g~--~~~l~~~~~~~~~~~~spdG~-~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (1045)
T 1k32_A          462 -----RK--IFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM  533 (1045)
T ss_dssp             -----TE--EEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred             -----Cc--EEEeeCCCcccCCceEcCCCC-EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcc
Confidence                 11  344456777888999999996 7778888777777764321100                           


Q ss_pred             ------CCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE-------------eeCCCcEEEEecCCCCCCCcccccee
Q psy4577         281 ------PDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS-------------ASDDHTICLWDINATPKENRVIDAKT  341 (384)
Q Consensus       281 ------~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s-------------~s~Dg~i~iwd~~~~~~~~~~~~~~~  341 (384)
                            .+..+....+..+..|.+.+..++++|+| .++++             .+.+..|++||+.+++       . .
T Consensus       534 ~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg-~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~-------~-~  604 (1045)
T 1k32_A          534 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS-ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-------V-T  604 (1045)
T ss_dssp             SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC-------E-E
T ss_pred             ccccccccccCHhHceEEcCCCCCChhheEEcCCC-eEEEEecccCcccccccccCCCceEEEEECCCCc-------E-E
Confidence                  00011112234556677889999999998 66764             2235678888988875       2 2


Q ss_pred             eeeccCCcEeEEEEecCCCcccccc
Q psy4577         342 IFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       342 ~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      .+.   ..+..++|||||+.++..+
T Consensus       605 ~l~---~~v~~~~~S~DG~~l~~~~  626 (1045)
T 1k32_A          605 EVK---NNLTDLRLSADRKTVMVRK  626 (1045)
T ss_dssp             EEE---EEEEEEEECTTSCEEEEEE
T ss_pred             Eee---cCcceEEECCCCCEEEEEc
Confidence            332   5688999999999877553

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.67  E-value=7.5e-16  Score=146.29  Aligned_cols=251  Identities=9%  Similarity=-0.001  Sum_probs=138.4

Q ss_pred             ccceEEEEEccCCCcEEEEEec-CC-----eEEEEEcccCCCccchhheeeeeeeEEEeccCCc-----cc------ccc
Q psy4577          52 TAKISDFSWNPNEPWVICSVSE-DN-----IMQILSVVCVEPFDDAVEERVINEEYKIWKKNTP-----FL------YDL  114 (384)
Q Consensus        52 ~~~V~~l~~~~~~~~~l~s~s~-D~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~  114 (384)
                      ...|.+++|+|||+ .|++++. |+     +|++||+.+++..             .+......     .+      .+.
T Consensus        36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~  101 (741)
T 2ecf_A           36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTR-------------LLVDSKVVLPGTETLSDEEKARRE  101 (741)
T ss_dssp             CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEE-------------EEECGGGTC---------------
T ss_pred             CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCcee-------------Eccchhhcccccccccchhhhhhh
Confidence            34699999999999 7778887 88     9999999876321             11110000     00      000


Q ss_pred             eeeeeeccCeeEEEEecCceeee---cceeeeeccccc---cccceeecccccccceeeeeccCCCCCCCCccceeEEEE
Q psy4577         115 VMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTP---FLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLIL  188 (384)
Q Consensus       115 ~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (384)
                      .........+.+++|+|||+.++   .+.+.+|+..+.   ....+ ..+  ......+.|.|++.          .+..
T Consensus       102 ~~~~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l-~~~--~~~~~~~~~SPDG~----------~la~  168 (741)
T 2ecf_A          102 RQRIAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQL-THG--EGFATDAKLSPKGG----------FVSF  168 (741)
T ss_dssp             -----CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBC-CCS--SSCEEEEEECTTSS----------EEEE
T ss_pred             hhhhccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEc-ccC--CcccccccCCCCCC----------EEEE
Confidence            00000002367899999999887   789999999776   33322 111  12234566666653          1111


Q ss_pred             eeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCC-
Q psy4577         189 GTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSS-  267 (384)
Q Consensus       189 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg-  267 (384)
                      ..     .+.+.+..+.    .+.......+.......+   .....    .......+..++|+|+|+ .|++++.|+ 
T Consensus       169 ~~-----~~~i~~~d~~----~g~~~~~~~~~~~~~~~g---~~~~v----~~~~~~~~~~~~~SpDg~-~l~~~~~d~~  231 (741)
T 2ecf_A          169 IR-----GRNLWVIDLA----SGRQMQLTADGSTTIGNG---IAEFV----ADEEMDRHTGYWWAPDDS-AIAYARIDES  231 (741)
T ss_dssp             EE-----TTEEEEEETT----TTEEEECCCCCCSSEEES---CCCHH----HHHHSCCCCSEEECTTSS-CEEEEEEECT
T ss_pred             Ee-----CCcEEEEecC----CCCEEEeccCCccceecc---cccee----eeeccccccceEECCCCC-EEEEEEEcCC
Confidence            11     0122222221    000000000000000000   00000    000012257899999996 677776655 


Q ss_pred             --------------------------------cEEEEecCCCCCCCCCC-CCccceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577         268 --------------------------------DVLVFDYTKHPSKPDPN-GECHPDLRLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       268 --------------------------------~i~iwd~~~~~~~~~~~-~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                                                      .|++||+.        . +....+.....|...+..++| ||| ++|+
T Consensus       232 ~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~--------~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~  301 (741)
T 2ecf_A          232 PVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA--------EQAQTQWIDLGKEQDIYLARVNW-RDP-QHLS  301 (741)
T ss_dssp             TSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS--------TTCCCEEECCCSCSSEEEEEEEE-EET-TEEE
T ss_pred             CCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC--------CCCceEEecCCCCcceEEEEEEe-CCC-CEEE
Confidence                                            78888875        3 332222111257788999999 999 6887


Q ss_pred             EeeC-----CCcEEEEecCCCCCCCccccceeeeeccCC----cEeEEEEecCCCccc
Q psy4577         315 SASD-----DHTICLWDINATPKENRVIDAKTIFTGHTA----VVELELIERLTKKAD  363 (384)
Q Consensus       315 s~s~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~sp~~~~~~  363 (384)
                      .++.     +..|++||+.+++       ....+..|..    .+.+++|+|||+.+.
T Consensus       302 ~~~~~~~~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~spdg~~~~  352 (741)
T 2ecf_A          302 FQRQSRDQKKLDLVEVTLASNQ-------QRVLAHETSPTWVPLHNSLRFLDDGSILW  352 (741)
T ss_dssp             EEEEETTSSEEEEEEEETTTCC-------EEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred             EEEecccCCeEEEEEEECCCCc-------eEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence            6654     6789999999987       6666665543    457899999998443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.63  E-value=4.9e-15  Score=136.69  Aligned_cols=93  Identities=6%  Similarity=-0.131  Sum_probs=76.6

Q ss_pred             EEEEEcCCCCcEEEEEeCC----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCC--c
Q psy4577         248 NRARYMPQNPCVIATKTPS----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDH--T  321 (384)
Q Consensus       248 ~~v~~~p~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg--~  321 (384)
                      .+++|+|+|+ ++++++.+    +.|++||+.        .+.   ...+.+|...+..++||||| ++|++++.|+  .
T Consensus       153 ~~~~~spDG~-~la~~~~~~~~~~~i~~~d~~--------~g~---~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~  219 (582)
T 3o4h_A          153 FGFVSDIRGD-LIAGLGFFGGGRVSLFTSNLS--------SGG---LRVFDSGEGSFSSASISPGM-KVTAGLETAREAR  219 (582)
T ss_dssp             CEEEEEEETT-EEEEEEEEETTEEEEEEEETT--------TCC---CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEE
T ss_pred             ceEEECCCCC-EEEEEEEcCCCCeEEEEEcCC--------CCC---ceEeecCCCccccceECCCC-CEEEEccCCCeeE
Confidence            8899999996 78877766    789999985        333   23667888899999999999 7999888898  9


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCcEeEEE--------EecCCCc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTAVVELEL--------IERLTKK  361 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~--------~sp~~~~  361 (384)
                      |++||+.+++       .. .+.+|...+..++        |+|||..
T Consensus       220 i~~~d~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~  259 (582)
T 3o4h_A          220 LVTVDPRDGS-------VE-DLELPSKDFSSYRPTAITWLGYLPDGRL  259 (582)
T ss_dssp             EEEECTTTCC-------EE-ECCCSCSHHHHHCCSEEEEEEECTTSCE
T ss_pred             EEEEcCCCCc-------EE-EccCCCcChhhhhhccccceeEcCCCcE
Confidence            9999999886       55 6777887787777        9999943

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.62  E-value=4.8e-15  Score=140.25  Aligned_cols=113  Identities=9%  Similarity=0.009  Sum_probs=67.8

Q ss_pred             ecCCceE-----EEEEcCCCCcEEE-EEeCCCc--EEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577         242 NHEGEVN-----RARYMPQNPCVIA-TKTPSSD--VLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       242 ~~~~~v~-----~v~~~p~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l  313 (384)
                      .|.+.+.     .+.|+|+|+.+++ ++..+|.  |.+||+.        .+.   ...+..+...+..+.++ ++ +.|
T Consensus       304 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~--------~~~---~~~lt~~~~~v~~~~~~-d~-~~i  370 (719)
T 1z68_A          304 SRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDT--------VEN---AIQITSGKWEAINIFRV-TQ-DSL  370 (719)
T ss_dssp             CSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSC--------STT---CEECSCSSSCEEEEEEE-CS-SEE
T ss_pred             cCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECC--------CCc---eEecccCceEEEEEEEE-eC-CEE
Confidence            4566666     7899999974444 4456665  5555553        222   23455566667787777 76 455


Q ss_pred             EEeeC-----CCcEEEEecCCCCCCCccccceee-eeccCCcEeEEEEecCCCcccccccc
Q psy4577         314 LSASD-----DHTICLWDINATPKENRVIDAKTI-FTGHTAVVELELIERLTKKADPVCTL  368 (384)
Q Consensus       314 ~s~s~-----Dg~i~iwd~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~sp~~~~~~~~c~~  368 (384)
                      +..+.     ++.+++|.+.......+ ..++.. +.+|...+..+.|+|+++.++..|+.
T Consensus       371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~  430 (719)
T 1z68_A          371 FYSSNEFEEYPGRRNIYRISIGSYPPS-KKCVTCHLRKERCQYYTASFSDYAKYYALVCYG  430 (719)
T ss_dssp             EEEESCGGGCTTCBEEEEEECSSSSCC-EEESSTTTTTTTBCBEEEEECGGGSSEEEEECC
T ss_pred             EEEEecCCCCCceEEEEEEeCCCCCCC-ceeccCccCCCCCceEEEEECCCCCEEEEEcCC
Confidence            55444     48899998865210000 001111 23366778899999999877765543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.62  E-value=9.3e-14  Score=119.64  Aligned_cols=226  Identities=10%  Similarity=0.007  Sum_probs=128.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccccc---------ceEEEEEccCCCcEEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA---------KISDFSWNPNEPWVICSV   71 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~---------~V~~l~~~~~~~~~l~s~   71 (384)
                      ++|+|+++.+++++..++.|.+||..+              .+.+..+..+..         .+.+++|+|+++.++++.
T Consensus        94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  159 (353)
T 3vgz_A           94 ATINNTTQTLWFGNTVNSAVTAIDAKT--------------GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISG  159 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTT--------------CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEEecCCCEEEEEeCCC--------------CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEe
Confidence            368999986667777789999999976              234444443322         278999999999554444


Q ss_pred             -ecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecc
Q psy4577          72 -SEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKK  146 (384)
Q Consensus        72 -s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~  146 (384)
                       +.++.|.+||+.+++             ....+..           +  ...+.+++|+|+++.++    ++.+.+||.
T Consensus       160 ~~~~~~i~~~d~~~~~-------------~~~~~~~-----------~--~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~  213 (353)
T 3vgz_A          160 IGKESVIWVVDGGNIK-------------LKTAIQN-----------T--GKMSTGLALDSEGKRLYTTNADGELITIDT  213 (353)
T ss_dssp             ESSSCEEEEEETTTTE-------------EEEEECC-----------C--CTTCCCCEEETTTTEEEEECTTSEEEEEET
T ss_pred             cCCCceEEEEcCCCCc-------------eEEEecC-----------C--CCccceEEECCCCCEEEEEcCCCeEEEEEC
Confidence             357899999997751             1111110           0  22356789999998776    788999998


Q ss_pred             ccccccceeecccc--cccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCC
Q psy4577         147 NTPFLYDLVMTHAL--EWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGD  224 (384)
Q Consensus       147 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~  224 (384)
                      .+......+.....  ......+.+.|+..          .+.+...   ..+.+.+                +|..   
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~----------~l~~~~~---~~~~v~~----------------~d~~---  261 (353)
T 3vgz_A          214 ADNKILSRKKLLDDGKEHFFINISLDTARQ----------RAFITDS---KAAEVLV----------------VDTR---  261 (353)
T ss_dssp             TTTEEEEEEECCCSSSCCCEEEEEEETTTT----------EEEEEES---SSSEEEE----------------EETT---
T ss_pred             CCCeEEEEEEcCCCCCCcccceEEECCCCC----------EEEEEeC---CCCEEEE----------------EECC---
Confidence            76554332221100  00011223333221          0000000   0011111                1111   


Q ss_pred             CCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEE
Q psy4577         225 FGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLS  304 (384)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  304 (384)
                             .+.. .......  ....++|+|+++.++++...++.|.+||..        ++.  .+..+..+ ..+.+++
T Consensus       262 -------~~~~-~~~~~~~--~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~--------~~~--~~~~~~~~-~~~~~~~  320 (353)
T 3vgz_A          262 -------NGNI-LAKVAAP--ESLAVLFNPARNEAYVTHRQAGKVSVIDAK--------SYK--VVKTFDTP-THPNSLA  320 (353)
T ss_dssp             -------TCCE-EEEEECS--SCCCEEEETTTTEEEEEETTTTEEEEEETT--------TTE--EEEEEECC-SEEEEEE
T ss_pred             -------CCcE-EEEEEcC--CCceEEECCCCCEEEEEECCCCeEEEEECC--------CCe--EEEEEecC-CCCCeEE
Confidence                   1121 1111111  125799999997567776689999999985        333  23344433 4679999


Q ss_pred             eCCCCCCeEEEeeCCC
Q psy4577         305 WNPSLNGYLLSASDDH  320 (384)
Q Consensus       305 ~s~~~~~~l~s~s~Dg  320 (384)
                      |+|+| ++|+.+..++
T Consensus       321 ~s~dg-~~l~v~~~~~  335 (353)
T 3vgz_A          321 LSADG-KTLYVSVKQK  335 (353)
T ss_dssp             ECTTS-CEEEEEEECC
T ss_pred             EcCCC-CEEEEEEccc
Confidence            99998 6665555543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.62  E-value=4.1e-13  Score=127.12  Aligned_cols=137  Identities=9%  Similarity=0.064  Sum_probs=80.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccc------------------eEEEEEcc
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK------------------ISDFSWNP   62 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~------------------V~~l~~~~   62 (384)
                      ++|||||+ .||.++. +.|++||+.+.              +.......+...                  +.+++|+|
T Consensus       119 ~~~SPdG~-~la~~~~-~~i~~~~~~~g--------------~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp  182 (723)
T 1xfd_A          119 AGWGPKGQ-QLIFIFE-NNIYYCAHVGK--------------QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (723)
T ss_dssp             CCBCSSTT-CEEEEET-TEEEEESSSSS--------------CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             cEECCCCC-EEEEEEC-CeEEEEECCCC--------------ceEEEecCCCCCceECcccceeEEEEeccCcceEEECC
Confidence            47999998 6888775 79999999762              222222332222                  37899999


Q ss_pred             CCCcEEEEEecC-CeEEEEEcccCCCc--cch-------hheeeeeeeEEEeccCCcccccceeeee----eccCeeEEE
Q psy4577          63 NEPWVICSVSED-NIMQILSVVCVEPF--DDA-------VEERVINEEYKIWKKNTPFLYDLVMTHA----LEWPSLTAQ  128 (384)
Q Consensus        63 ~~~~~l~s~s~D-~~i~vwd~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~  128 (384)
                      ||+ .|++++.| +.+++|++......  ...       .........+.+|+.........+..+.    ....+.+++
T Consensus       183 Dg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~  261 (723)
T 1xfd_A          183 DGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK  261 (723)
T ss_dssp             TSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE
T ss_pred             CCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEE
Confidence            999 55566544 56777776422110  000       0000112356777765543212222210    134577899


Q ss_pred             EecCceeee--------cceeeeeccccccccce
Q psy4577         129 WLPDVTRVI--------NEEYKIWKKNTPFLYDL  154 (384)
Q Consensus       129 ~~~~~~~~~--------d~~v~~w~~~~~~~~~~  154 (384)
                      |+|+|+.++        +..+.+||..+......
T Consensus       262 ~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~  295 (723)
T 1xfd_A          262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK  295 (723)
T ss_dssp             ESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred             EeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence            999999875        35788999877655443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.61  E-value=1.5e-13  Score=115.47  Aligned_cols=236  Identities=10%  Similarity=0.013  Sum_probs=145.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|++..+++++..++.|..||..+               . ...+..+...+.+++|+|+|. ++++...++.|.+|
T Consensus        33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~---------------~-~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           33 PVYVPARSAVIFSDVRQNRTWAWSDDG---------------Q-LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQ   95 (296)
T ss_dssp             EEEEGGGTEEEEEEGGGTEEEEEETTS---------------C-EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEE
T ss_pred             CeEeCCCCEEEEEeCCCCEEEEEECCC---------------C-eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEE
Confidence            368899876888998999999999875               2 344455677899999999999 77776677899999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-c---ceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-N---EEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-d---~~v~~w~~~~~~~~~~~~  156 (384)
                      |..+++.              ..+...       ..+ .....+..++++|+|+..+ +   ++...+...        .
T Consensus        96 d~~~g~~--------------~~~~~~-------~~~-~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~--------~  145 (296)
T 3e5z_A           96 REPGGEW--------------ESIADS-------FEG-KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY--------G  145 (296)
T ss_dssp             CSTTCCE--------------EEEECE-------ETT-EECCCCCCEEECTTSCEEEEECSHHHHCGGGSS--------C
T ss_pred             cCCCCcE--------------EEEeec-------cCC-CCCCCCCCEEECCCCCEEEECCccccccccccc--------c
Confidence            9866421              110000       000 0022355788889887654 1   221100000        0


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .. .                                  ......+..+.              ..           +.  
T Consensus       146 ~~-~----------------------------------~~~~~~l~~~~--------------~~-----------g~--  163 (296)
T 3e5z_A          146 GE-M----------------------------------ELPGRWVFRLA--------------PD-----------GT--  163 (296)
T ss_dssp             CC-C----------------------------------CSSSCEEEEEC--------------TT-----------SC--
T ss_pred             cc-c----------------------------------cCCCcEEEEEC--------------CC-----------CC--
Confidence            00 0                                  00000111111              00           11  


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc-cceeeecCCCCceEEEEeCCCCCCeEEE
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC-HPDLRLRGHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      ......+....+.++|+|+++ ++++.+.++.|++|++..       .+.. .....+..+...+.+++++++| +++++
T Consensus       164 ~~~~~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~-------~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~  234 (296)
T 3e5z_A          164 LSAPIRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNA-------RGETEYQGVHFTVEPGKTDGLRVDAGG-LIWAS  234 (296)
T ss_dssp             EEEEECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECS-------SSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEE
T ss_pred             EEEeecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECC-------CCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEE
Confidence            112223445678999999996 558888889999999852       2222 1122233355567889999998 66666


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEE-ecCCCccccc
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELI-ERLTKKADPV  365 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-sp~~~~~~~~  365 (384)
                      .  ++.|.+||.. ++       .+..+..+.. +++++| +|++..+...
T Consensus       235 ~--~~~v~~~~~~-g~-------~~~~~~~~~~-~~~~~f~~~d~~~L~v~  274 (296)
T 3e5z_A          235 A--GDGVHVLTPD-GD-------ELGRVLTPQT-TSNLCFGGPEGRTLYMT  274 (296)
T ss_dssp             E--TTEEEEECTT-SC-------EEEEEECSSC-CCEEEEESTTSCEEEEE
T ss_pred             c--CCeEEEECCC-CC-------EEEEEECCCC-ceeEEEECCCCCEEEEE
Confidence            6  7899999987 55       6777777777 999999 4777755443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.61  E-value=6.9e-14  Score=121.12  Aligned_cols=76  Identities=9%  Similarity=0.045  Sum_probs=51.9

Q ss_pred             ceEEEE-EcCCCCcEEEEEeC-CC-----cEEEEecCCCCCCCCCCCCccceee-ecCCCCceEEEEeCC---CCCCeEE
Q psy4577         246 EVNRAR-YMPQNPCVIATKTP-SS-----DVLVFDYTKHPSKPDPNGECHPDLR-LRGHQKEGYGLSWNP---SLNGYLL  314 (384)
Q Consensus       246 ~v~~v~-~~p~~~~~l~s~s~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~s~---~~~~~l~  314 (384)
                      .+..++ |+|+|+ +|++++. +.     .|.+|++..       ++....+.. ...+...+..++|+|   +| ++|+
T Consensus       255 ~~~~i~~~spdG~-~l~v~~~~~~~~~~~~i~v~~~~~-------~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg-~~l~  325 (365)
T 1jof_A          255 YRADVCALTFSGK-YMFASSRANKFELQGYIAGFKLRD-------CGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMA  325 (365)
T ss_dssp             EEEEEEEECTTSS-EEEEEEEESSTTSCCEEEEEEECT-------TSCEEEEEEEEECSSCCTTCCCEEECTTCT-TEEE
T ss_pred             ccccEEEECCCCC-EEEEECCCCCCCCCCeEEEEEECC-------CCCEEEeeeeeecCCCCcccceecCCCcCC-CEEE
Confidence            477899 999997 5554443 23     899999852       232222111 333455567899999   78 7888


Q ss_pred             EeeCC-CcEEEEecCCC
Q psy4577         315 SASDD-HTICLWDINAT  330 (384)
Q Consensus       315 s~s~D-g~i~iwd~~~~  330 (384)
                      +++.+ ++|.+|++...
T Consensus       326 v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          326 ITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EECSSSCEEEEEEEETT
T ss_pred             EEEcCCCeEEEEEEchh
Confidence            88764 99999999764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.61  E-value=1.2e-14  Score=127.33  Aligned_cols=98  Identities=7%  Similarity=-0.006  Sum_probs=64.8

Q ss_pred             ceEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC-CCCCeEEEee--
Q psy4577         246 EVNRARYMPQNPCVIATKTPS-----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP-SLNGYLLSAS--  317 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~~l~s~s--  317 (384)
                      .+..++|+|+++ .|+.++.+     +.|++||+.        .+....+..+.+    .. +.|+| +| ++|++++  
T Consensus       239 ~~~~~~~spdg~-~l~~~~~~~~~~~~~l~~~d~~--------~g~~~~l~~~~~----~~-~~~s~~dg-~~l~~~~~~  303 (396)
T 3c5m_A          239 SCTHEFWIPDGS-AMAYVSYFKGQTDRVIYKANPE--------TLENEEVMVMPP----CS-HLMSNFDG-SLMVGDGCD  303 (396)
T ss_dssp             EEEEEEECTTSS-CEEEEEEETTTCCEEEEEECTT--------TCCEEEEEECCS----EE-EEEECSSS-SEEEEEECC
T ss_pred             cccceEECCCCC-EEEEEecCCCCccceEEEEECC--------CCCeEEeeeCCC----CC-CCccCCCC-ceEEEecCC
Confidence            577899999997 44444433     449999985        343333322322    23 89999 98 6887754  


Q ss_pred             --------------CCCcEEEEecCCCCCCCccccceeeeeccCC-----------cEeEEEEecCCCcccccc
Q psy4577         318 --------------DDHTICLWDINATPKENRVIDAKTIFTGHTA-----------VVELELIERLTKKADPVC  366 (384)
Q Consensus       318 --------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~sp~~~~~~~~c  366 (384)
                                    .+..|++||+.+++       . ..+..|..           .+..++|+|+++.+....
T Consensus       304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~-------~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s  369 (396)
T 3c5m_A          304 APVDVADADSYNIENDPFLYVLNTKAKS-------A-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTS  369 (396)
T ss_dssp             C----------CCCCCCEEEEEETTTTB-------C-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             cceeeccccccccCCCCcEEEEecccCc-------e-EEccCCCCccccccccccCCCCCceEccCCCeEEEEe
Confidence                          34789999998774       2 33444443           256789999998766554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.60  E-value=6.3e-13  Score=113.30  Aligned_cols=103  Identities=7%  Similarity=0.058  Sum_probs=76.9

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC------CCCCeEEEeeCC
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP------SLNGYLLSASDD  319 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~------~~~~~l~s~s~D  319 (384)
                      ...+++++|++.+++++...++.|++||..        ++.........++...+..++|+|      +| ..+++...+
T Consensus       197 ~p~gia~d~~~g~l~v~d~~~~~I~~~~~~--------~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g-~~~v~~~~~  267 (329)
T 3fvz_A          197 VPHSLALVPHLDQLCVADRENGRIQCFKTD--------TKEFVREIKHASFGRNVFAISYIPGFLFAVNG-KPYFGDQEP  267 (329)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETT--------TCCEEEEECCTTTTTCEEEEEEETTEEEEEEC-CCCTTCSCC
T ss_pred             CCcEEEEECCCCEEEEEECCCCEEEEEECC--------CCcEEEEEeccccCCCcceeeecCCEEEEeCC-CEEeccCCC
Confidence            467899999844689998899999999984        354433333345667889999999      55 355555566


Q ss_pred             CcEEEEecCCCCCCCccccceeee---eccCCcEeEEEEecCCCcccc
Q psy4577         320 HTICLWDINATPKENRVIDAKTIF---TGHTAVVELELIERLTKKADP  364 (384)
Q Consensus       320 g~i~iwd~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~sp~~~~~~~  364 (384)
                      .+|++||..+++       .+..+   .++.....+++++|+|....+
T Consensus       268 ~~v~~~~~~~g~-------~~~~~~~~~~~~~~p~~ia~~~dG~lyva  308 (329)
T 3fvz_A          268 VQGFVMNFSSGE-------IIDVFKPVRKHFDMPHDIVASEDGTVYIG  308 (329)
T ss_dssp             CCEEEEETTTCC-------EEEEECCSSSCCSSEEEEEECTTSEEEEE
T ss_pred             cEEEEEEcCCCe-------EEEEEcCCCCccCCeeEEEECCCCCEEEE
Confidence            799999999987       77776   357778999999999954443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.59  E-value=1.1e-12  Score=109.52  Aligned_cols=99  Identities=10%  Similarity=0.080  Sum_probs=73.3

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec--CCCCceEEEEeCCCCCCeEEEeeCCC-c
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR--GHQKEGYGLSWNPSLNGYLLSASDDH-T  321 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~s~~~~~~l~s~s~Dg-~  321 (384)
                      ..+.+++++|++ +++++.+.++.|++||..         +..  +..+.  ++...+..++++|+| +++++...++ .
T Consensus       164 ~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~---------g~~--~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~~  230 (286)
T 1q7f_A          164 EFPNGVVVNDKQ-EIFISDNRAHCVKVFNYE---------GQY--LRQIGGEGITNYPIGVGINSNG-EILIADNHNNFN  230 (286)
T ss_dssp             SSEEEEEECSSS-EEEEEEGGGTEEEEEETT---------CCE--EEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCE
T ss_pred             CCcEEEEECCCC-CEEEEECCCCEEEEEcCC---------CCE--EEEEccCCccCCCcEEEECCCC-CEEEEeCCCCEE
Confidence            357899999999 488888889999999973         322  22333  333578999999998 7888888886 9


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCC--cEeEEEEecCCCcccc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTA--VVELELIERLTKKADP  364 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~  364 (384)
                      |.+||.. ++       .+..+..+..  .+.+++++|+|....+
T Consensus       231 i~~~~~~-g~-------~~~~~~~~~~~~~~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          231 LTIFTQD-GQ-------LISALESKVKHAQCFDVALMDDGSVVLA  267 (286)
T ss_dssp             EEEECTT-SC-------EEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred             EEEECCC-CC-------EEEEEcccCCCCcceeEEECCCCcEEEE
Confidence            9999964 44       5666655433  4789999999975544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.57  E-value=4.7e-12  Score=109.21  Aligned_cols=90  Identities=10%  Similarity=0.169  Sum_probs=70.8

Q ss_pred             EEEcCCCCcEEEEEeC----------CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         250 ARYMPQNPCVIATKTP----------SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       250 v~~~p~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      ++|+|+++.++++...          .+.|.+||+.        +.  +.+..+..+.  +.+++|+||| ++|++++. 
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~--------t~--~~v~~i~~~~--p~~ia~spdg-~~l~v~n~-  324 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK--------TK--QRVARIPGRD--ALSMTIDQQR-NLMLTLDG-  324 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETT--------TT--EEEEEEECTT--CCEEEEETTT-TEEEEECS-
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECC--------CC--cEEEEEecCC--eeEEEECCCC-CEEEEeCC-
Confidence            7899998766665441          3479999985        33  3455677666  8999999999 68888876 


Q ss_pred             CcEEEEecCCC--CCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577         320 HTICLWDINAT--PKENRVIDAKTIFTGHTAVVELELIERLTK  360 (384)
Q Consensus       320 g~i~iwd~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  360 (384)
                      ++|.+||..++  +       .+.++..+...-..++++|+|.
T Consensus       325 ~~v~v~D~~t~~l~-------~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          325 GNVNVYDISQPEPK-------LLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEECSSSSCE-------EEEEETTSCSSEEEEEECCCSC
T ss_pred             CeEEEEECCCCcce-------eeEEeccCCCCcEEEEecCCCC
Confidence            99999999998  7       7887766677788899999986

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.57  E-value=2.5e-12  Score=109.79  Aligned_cols=266  Identities=7%  Similarity=-0.039  Sum_probs=152.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      +.|+|++. .++..+.++.++.|.-                 .....+.++...+.+++|+|++. +++++..++.|.+|
T Consensus        11 ~~~~~~~~-~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~   71 (333)
T 2dg1_A           11 LFYSGKSN-SAVPIISESELQTITA-----------------EPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKI   71 (333)
T ss_dssp             CCSCGGGG-CSSCCCCGGGSCEEEC-----------------EEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEE
T ss_pred             eeecCCcc-ceeEEeecccCccccc-----------------ceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEE
Confidence            46888876 4666677888999922                 44555566667889999999999 77788889999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----c----ceeeeecccccccc
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----N----EEYKIWKKNTPFLY  152 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d----~~v~~w~~~~~~~~  152 (384)
                      |..+++.              ..+..          .  ....+.+++|+|+++.++    +    +.+.+|+..+....
T Consensus        72 d~~~~~~--------------~~~~~----------~--~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~  125 (333)
T 2dg1_A           72 NPETKEI--------------KRPFV----------S--HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  125 (333)
T ss_dssp             CTTTCCE--------------EEEEE----------C--SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             eCCCCcE--------------EEEee----------C--CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence            9876411              11100          0  134577899999998665    2    36788877655432


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                      ..+...........+.+.+++                        .+.+....-........+..++...          
T Consensus       126 ~~~~~~~~~~~~~~i~~d~~g------------------------~l~v~~~~~~~~~~~~~l~~~~~~~----------  171 (333)
T 2dg1_A          126 DIIEDLSTAYCIDDMVFDSKG------------------------GFYFTDFRGYSTNPLGGVYYVSPDF----------  171 (333)
T ss_dssp             EEECSSSSCCCEEEEEECTTS------------------------CEEEEECCCBTTBCCEEEEEECTTS----------
T ss_pred             EEEccCccCCcccceEECCCC------------------------CEEEEeccccccCCCceEEEEeCCC----------
Confidence            221110000001111121111                        1111111000000000011111110          


Q ss_pred             CceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc-cc-----eeeecCCCCceEEEEeC
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC-HP-----DLRLRGHQKEGYGLSWN  306 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~-----~~~~~~h~~~i~~~~~s  306 (384)
                      +.+  .....+...+..++|+|+++.++++.+.++.|++||+...       +.. ..     ...+.++ ..+..++++
T Consensus       172 ~~~--~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~-------g~~~~~~~~~~~~~~~~~-~~~~~i~~d  241 (333)
T 2dg1_A          172 RTV--TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD-------GVTIQPFGATIPYYFTGH-EGPDSCCID  241 (333)
T ss_dssp             CCE--EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-------SSSEEEEEEEEEEECCSS-SEEEEEEEB
T ss_pred             CEE--EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC-------CcCcccccceEEEecCCC-CCCCceEEC
Confidence            111  1112233457899999999646666667889999998521       111 10     1122233 467889999


Q ss_pred             CCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCC------cEeEEEEecCCCcccc
Q psy4577         307 PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTA------VVELELIERLTKKADP  364 (384)
Q Consensus       307 ~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~------~v~~~~~sp~~~~~~~  364 (384)
                      ++| +++++...++.|.+||.. ++       .+..+..+..      .+.+++|+|++..+..
T Consensus       242 ~~G-~l~v~~~~~~~v~~~d~~-g~-------~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v  296 (333)
T 2dg1_A          242 SDD-NLYVAMYGQGRVLVFNKR-GY-------PIGQILIPGRDEGHMLRSTHPQFIPGTNQLII  296 (333)
T ss_dssp             TTC-CEEEEEETTTEEEEECTT-SC-------EEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred             CCC-CEEEEEcCCCEEEEECCC-CC-------EEEEEEcCCCccccccCcceEEECCCCCEEEE
Confidence            998 788888888999999984 44       5555543332      6899999999866543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.54  E-value=1.9e-13  Score=129.53  Aligned_cols=66  Identities=15%  Similarity=0.190  Sum_probs=50.9

Q ss_pred             CCCCCCCceEEEeeCC---------CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEe
Q psy4577           2 QWSPHNETILASSGTD---------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS   72 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s   72 (384)
                      +|||||+ .||.++.+         +.+.+||+.+.              + ...+.+|.+.+...+|||||+ .||.+ 
T Consensus        68 ~~Spdg~-~l~~~~~~~~~~r~~~~~~~~~~d~~~~--------------~-~~~l~~~~~~~~~~~~SPdG~-~la~~-  129 (740)
T 4a5s_A           68 SISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLNKR--------------Q-LITEERIPNNTQWVTWSPVGH-KLAYV-  129 (740)
T ss_dssp             EECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTTT--------------E-ECCSSCCCTTEEEEEECSSTT-CEEEE-
T ss_pred             EECCCCC-EEEEEECCeeeEEEccceEEEEEECCCC--------------c-EEEcccCCCcceeeEECCCCC-EEEEE-
Confidence            4699998 67887766         55679999861              2 233566778899999999999 55565 


Q ss_pred             cCCeEEEEEcccC
Q psy4577          73 EDNIMQILSVVCV   85 (384)
Q Consensus        73 ~D~~i~vwd~~~~   85 (384)
                      .|+.|.+|++.++
T Consensus       130 ~~~~i~~~~~~~~  142 (740)
T 4a5s_A          130 WNNDIYVKIEPNL  142 (740)
T ss_dssp             ETTEEEEESSTTS
T ss_pred             ECCeEEEEECCCC
Confidence            5789999999875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.54  E-value=1.3e-12  Score=123.23  Aligned_cols=105  Identities=11%  Similarity=-0.056  Sum_probs=69.4

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCCCCCCCccceeeecCCCC--ceEEEEeCCCCCCeEEEe
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPS---SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK--EGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~s~~~~~~l~s~  316 (384)
                      .+...+.. .|+|+|..+++.+..+   +.|.+||+.        .+.......+..|..  .+..++|++++ .++++.
T Consensus       284 ~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~  353 (710)
T 2xdw_A          284 DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT--------DPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCY  353 (710)
T ss_dssp             CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT--------SCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEE
T ss_pred             CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC--------CCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEE
Confidence            34444444 4788886555554433   369999985        222112234445544  68889999776 789999


Q ss_pred             eCCCc--EEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         317 SDDHT--ICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       317 s~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                      ..|+.  |++||+.+++       .+..+..+.+.|..+.++|+++.+.
T Consensus       354 ~~~g~~~l~~~~~~~g~-------~~~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          354 LHDVKNTLQLHDLATGA-------LLKIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             EETTEEEEEEEETTTCC-------EEEEECCCSSEEEEEECCTTCSEEE
T ss_pred             EECCEEEEEEEECCCCC-------EEEecCCCCceEEEEecCCCCCEEE
Confidence            99985  5566776666       6677777778899999999887544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.52  E-value=9.3e-13  Score=123.40  Aligned_cols=104  Identities=9%  Similarity=-0.031  Sum_probs=66.5

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCc--------eEEEEeCCCCCCeE
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE--------GYGLSWNPSLNGYL  313 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--------i~~~~~s~~~~~~l  313 (384)
                      .|...+..++|+|+|+ ++++++.++..+||.+...      .+....  ...++...        +..++|+|++ +++
T Consensus       239 ~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~------~~~~~~--l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~  308 (662)
T 3azo_A          239 GPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPA------TGAATQ--LCRREEEFAGPLWTPGMRWFAPLANG-LIA  308 (662)
T ss_dssp             ETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTT------TCCEEE--SSCCSSBSSCCCCSTTCCSEEECTTS-CEE
T ss_pred             CCCceEcceEECCCCe-EEEEECCCCCeEEEEEECC------CCceee--cccccccccCccccccCceEeEeCCC-EEE
Confidence            4567889999999997 8888888885455444210      222221  12222221        5678999998 799


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         314 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                      ++++. +.++||.+.....      .+..+..|...+..+ |++++..+.
T Consensus       309 ~~~~~-~~~~l~~~d~~~~------~~~~l~~~~~~~~~~-~s~~~~~~~  350 (662)
T 3azo_A          309 VVHGK-GAAVLGILDPESG------ELVDAAGPWTEWAAT-LTVSGTRAV  350 (662)
T ss_dssp             EEEBS-SSCEEEEEETTTT------EEEECCSSCCEEEEE-EEEETTEEE
T ss_pred             EEEEc-CccEEEEEECCCC------cEEEecCCCCeEEEE-EecCCCEEE
Confidence            99998 9999995542211      456666777777766 256665433

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.46  E-value=1.4e-11  Score=105.76  Aligned_cols=56  Identities=5%  Similarity=-0.085  Sum_probs=44.0

Q ss_pred             ceEEEEeCC-CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         299 EGYGLSWNP-SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       299 ~i~~~~~s~-~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      .+.+++|+| ++ ++|+++  ++.|++||+.+++       .+..+.. ...+.+++|+|+++.+...
T Consensus       256 ~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~-------~~~~~~~-~~~~~~~~~s~dg~~l~~~  312 (349)
T 1jmx_B          256 LYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRK-------LIKAANL-DHTYYCVAFDKKGDKLYLG  312 (349)
T ss_dssp             CEEEEEECSSCT-TEEEEE--ESEEEEEETTTTE-------EEEEEEC-SSCCCEEEECSSSSCEEEE
T ss_pred             cceeeEecCCCC-CEEEEE--cCeEEEEECccCe-------EEEEEcC-CCCccceEECCCCCEEEEe
Confidence            466788999 98 688877  8899999999886       6666653 3457899999999876654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.46  E-value=1.8e-12  Score=121.50  Aligned_cols=105  Identities=11%  Similarity=0.051  Sum_probs=67.5

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCC--------CcEEEEecCCCCCCCCCCCCc-cceeeecCCCCceEEEEeCCCCCCeEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPS--------SDVLVFDYTKHPSKPDPNGEC-HPDLRLRGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~s~~~~~~l~  314 (384)
                      ...+..++|+|+|+ .|+.++.+        ..|++||+..       ++.. .......+|...+..++|+||| ++++
T Consensus       187 ~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~-------~g~~~~~~~l~~~~~~~~~~~~~spdg-~l~~  257 (662)
T 3azo_A          187 HRFVTGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTE-------DGRFADTRTLLGGPEEAIAQAEWAPDG-SLIV  257 (662)
T ss_dssp             SSEECCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECT-------TSCEEEEEEEEEETTBCEEEEEECTTS-CEEE
T ss_pred             CCcccCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECC-------CCcccccEEeCCCCCceEcceEECCCC-eEEE
Confidence            44577889999996 66665544        3799999841       1211 2222334567789999999999 5888


Q ss_pred             EeeCCC--cEEEEecCCCCCCCccccceeeeeccCCc--------EeEEEEecCCCcccc
Q psy4577         315 SASDDH--TICLWDINATPKENRVIDAKTIFTGHTAV--------VELELIERLTKKADP  364 (384)
Q Consensus       315 s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~h~~~--------v~~~~~sp~~~~~~~  364 (384)
                      +++.|+  .|++||+.+++       ......++...        +..++|+|++..+.+
T Consensus       258 ~~~~~~~~~l~~~~~~~~~-------~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~  310 (662)
T 3azo_A          258 ATDRTGWWNLHRVDPATGA-------ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV  310 (662)
T ss_dssp             EECTTSSCEEEEECTTTCC-------EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred             EECCCCCeEEEEEECCCCc-------eeecccccccccCccccccCceEeEeCCCEEEEE
Confidence            888888  55666655554       33333333222        556788888775443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.45  E-value=4.5e-11  Score=99.65  Aligned_cols=188  Identities=7%  Similarity=0.062  Sum_probs=117.7

Q ss_pred             CCCCCceEEEeeC-CCeEEEeecCCcCcccccCCCCCCCCeeEEEec-ccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           4 SPHNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         4 sp~~~~~lat~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .+++. ++++... ++.|++||...               +.+..+. ++...+.+++++|+|. ++++...++.|.+||
T Consensus        86 ~~~g~-l~v~~~~~~~~i~~~d~~g---------------~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~  148 (286)
T 1q7f_A           86 RNSGD-IIVTERSPTHQIQIYNQYG---------------QFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFD  148 (286)
T ss_dssp             TTTTE-EEEEECGGGCEEEEECTTS---------------CEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred             cCCCe-EEEEcCCCCCEEEEECCCC---------------cEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEc
Confidence            34554 5666543 88999999542               3333332 3445789999999998 777777889999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~  157 (384)
                      ....              .+..+.....           ...+.+++++|+|+.++    ++.|++|+.....+      
T Consensus       149 ~~g~--------------~~~~~~~~~~-----------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~------  197 (286)
T 1q7f_A          149 QNGN--------------VLHKFGCSKH-----------LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL------  197 (286)
T ss_dssp             TTSC--------------EEEEEECTTT-----------CSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE------
T ss_pred             CCCC--------------EEEEeCCCCc-----------cCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE------
Confidence            6542              1111111000           12456899999887554    34555554321100      


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI  237 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  237 (384)
                                                                  ..+.                                
T Consensus       198 --------------------------------------------~~~~--------------------------------  201 (286)
T 1q7f_A          198 --------------------------------------------RQIG--------------------------------  201 (286)
T ss_dssp             --------------------------------------------EEES--------------------------------
T ss_pred             --------------------------------------------EEEc--------------------------------
Confidence                                                        0000                                


Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCC-cEEEEecCCCCCCCCCCCCccceeeecCC--CCceEEEEeCCCCCCeEE
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSS-DVLVFDYTKHPSKPDPNGECHPDLRLRGH--QKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~s~~~~~~l~  314 (384)
                        ..++...+.+++++|+|. ++++...++ .|++||.         .+..  +..+..+  ...+.+++++|+| ++++
T Consensus       202 --~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~---------~g~~--~~~~~~~~~~~~~~~i~~~~~g-~l~v  266 (286)
T 1q7f_A          202 --GEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ---------DGQL--ISALESKVKHAQCFDVALMDDG-SVVL  266 (286)
T ss_dssp             --CTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECT---------TSCE--EEEEEESSCCSCEEEEEEETTT-EEEE
T ss_pred             --cCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECC---------CCCE--EEEEcccCCCCcceeEEECCCC-cEEE
Confidence              001123567899999994 888877775 9999996         3332  2233333  2347899999998 6777


Q ss_pred             EeeCCCcEEEEecCCCC
Q psy4577         315 SASDDHTICLWDINATP  331 (384)
Q Consensus       315 s~s~Dg~i~iwd~~~~~  331 (384)
                      + +.|++|++|++....
T Consensus       267 s-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          267 A-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             E-ETTTEEEEEECSCCC
T ss_pred             E-CCCCeEEEEEccccc
Confidence            7 579999999987654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.44  E-value=1.5e-10  Score=96.99  Aligned_cols=108  Identities=10%  Similarity=0.047  Sum_probs=80.9

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc---cceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC---HPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      ...+.++|+|+++.++++.+.++.|.+|++...      .+..   ..+..+..+......++++++| ++.++...++.
T Consensus       149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~------~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~  221 (297)
T 3g4e_A          149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQ------TGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGR  221 (297)
T ss_dssp             SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTT------TCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTE
T ss_pred             ccccceEEcCCCCEEEEecCCCCcEEEEeccCC------CCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCE
Confidence            446889999999766777777899999997411      2322   1222333444567899999999 78888888889


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCcEeEEEEe-cCCCcccccc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIE-RLTKKADPVC  366 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~~c  366 (384)
                      |..||..+++       .+..+..+...+++++|. |++..+....
T Consensus       222 v~~~d~~tG~-------~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          222 VIRLDPVTGK-------RLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEEECTTTCC-------EEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             EEEEcCCCce-------EEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            9999999887       888887777789999999 8887655443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.40  E-value=1.2e-11  Score=116.43  Aligned_cols=102  Identities=9%  Similarity=-0.122  Sum_probs=65.9

Q ss_pred             cCCceEEEEEcCCCCcEEEEEe---CCCcEEEEecCCCCCCCCCCCCccceeeecCC--CCceEEEEeCCCCCCeEEEee
Q psy4577         243 HEGEVNRARYMPQNPCVIATKT---PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH--QKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      +...+....+ +++. +++...   .++.|.+||+.        .+.......+..|  ...+..++|+ ++ .++++..
T Consensus       270 ~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~--------~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~  337 (695)
T 2bkl_A          270 GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPA--------KPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYL  337 (695)
T ss_dssp             CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTT--------BCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEE
T ss_pred             CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCC--------CCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEE
Confidence            3444455555 6675 666554   35889999985        2221112233333  4467888998 55 6999999


Q ss_pred             CCCcEEEEecC-CCCCCCccccceeeeecc-CCcEeEEEEecCCCccc
Q psy4577         318 DDHTICLWDIN-ATPKENRVIDAKTIFTGH-TAVVELELIERLTKKAD  363 (384)
Q Consensus       318 ~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~  363 (384)
                      .|+..+||.+. .++       ....+..+ .+.|..+.++|+++.+.
T Consensus       338 ~dg~~~l~~~~~~g~-------~~~~l~~~~~~~v~~~~~s~d~~~l~  378 (695)
T 2bkl_A          338 KDATSEVRVATLKGK-------PVRTVQLPGVGAASNLMGLEDLDDAY  378 (695)
T ss_dssp             ETTEEEEEEEETTCC-------EEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred             ECCEEEEEEEeCCCC-------eeEEecCCCCeEEEEeecCCCCCEEE
Confidence            99999998776 333       44555544 66788888999887655

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.38  E-value=6.7e-11  Score=103.17  Aligned_cols=68  Identities=15%  Similarity=0.109  Sum_probs=43.8

Q ss_pred             EEEcCCCCcEEEEE--------eCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC-----------ceEEEEeCCCCC
Q psy4577         250 ARYMPQNPCVIATK--------TPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK-----------EGYGLSWNPSLN  310 (384)
Q Consensus       250 v~~~p~~~~~l~s~--------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~-----------~i~~~~~s~~~~  310 (384)
                      ++|+|+|+.++++.        ..+..|++||+.        .+..   ..+..|..           .+.+++|+||| 
T Consensus       295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~--------~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~spDg-  362 (388)
T 3pe7_A          295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK--------NGTQ---HRVARHDTSWKVFEGDRQVTHPHPSFTPDD-  362 (388)
T ss_dssp             SEEEEEECCC------------CCCCEEEEEETT--------TTEE---EEEEECCCCCCCBTTBSSTTCCCCEECTTS-
T ss_pred             CeEccCCCcceeEeeeccccccCCCCEEEEEecc--------CCce---EEeccccCcccccccccccCCCCccCCCCC-
Confidence            37899997444332        456789999985        3322   34444544           57889999999 


Q ss_pred             CeEEEe-eCCCcEEEEecCC
Q psy4577         311 GYLLSA-SDDHTICLWDINA  329 (384)
Q Consensus       311 ~~l~s~-s~Dg~i~iwd~~~  329 (384)
                      +.|+.. ..+|...||.+.-
T Consensus       363 ~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          363 KQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             SEEEEEECTTSSCEEEEEEC
T ss_pred             CEEEEEecCCCceeEEEEEC
Confidence            565554 4678888886654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.38  E-value=1.2e-10  Score=96.16  Aligned_cols=100  Identities=6%  Similarity=-0.016  Sum_probs=70.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      .+.+++++|++. ++++...++.|++||..         +.... .....+...+.+++++++| .++++...++.|.+|
T Consensus       151 ~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~---------~~~~~-~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~  218 (270)
T 1rwi_B          151 DPDGVAVDNSGN-VYVTDTDNNRVVKLEAE---------SNNQV-VLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKL  218 (270)
T ss_dssp             SCCCEEECTTCC-EEEEEGGGTEEEEECTT---------TCCEE-ECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEE
T ss_pred             CceeEEEeCCCC-EEEEECCCCEEEEEecC---------CCceE-eecccCCCCceEEEECCCC-CEEEEECCCCcEEEE
Confidence            467789999995 88887778899999974         21111 1112233568899999998 788888888999999


Q ss_pred             ecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccc
Q psy4577         326 DINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADP  364 (384)
Q Consensus       326 d~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  364 (384)
                      |.....       .......+...+.++++.|+|....+
T Consensus       219 ~~~~~~-------~~~~~~~~~~~p~~i~~~~~g~l~v~  250 (270)
T 1rwi_B          219 LAGSTT-------STVLPFTGLNTPLAVAVDSDRTVYVA  250 (270)
T ss_dssp             CTTCSC-------CEECCCCSCSCEEEEEECTTCCEEEE
T ss_pred             cCCCCc-------ceeeccCCCCCceeEEECCCCCEEEE
Confidence            987654       22222233456899999999974433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.36  E-value=1.1e-11  Score=106.18  Aligned_cols=82  Identities=9%  Similarity=-0.043  Sum_probs=62.8

Q ss_pred             EEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccc
Q psy4577         260 IATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDA  339 (384)
Q Consensus       260 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  339 (384)
                      +|+++.||.|.+||+.        .+....      +...|++++|||+|   ++.|..||++++|+.....       .
T Consensus       139 ~av~~~dG~L~v~dl~--------~~~~~~------~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~-------~  194 (388)
T 1xip_A          139 LVILNSVNDLSALDLR--------TKSTKQ------LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGE-------M  194 (388)
T ss_dssp             EEEEETTSEEEEEETT--------TCCEEE------EEESEEEEEECSSE---EEEEETTSCEEEEEEETTE-------E
T ss_pred             EEEEECCCCEEEEEcc--------CCcccc------ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCcc-------c
Confidence            7778999999999996        333221      44579999999997   6779999999999887764       2


Q ss_pred             --eeee------e---ccCCcEeEEEEecCCCccccc
Q psy4577         340 --KTIF------T---GHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       340 --~~~~------~---~h~~~v~~~~~sp~~~~~~~~  365 (384)
                        ..++      .   +|...|.+|.|.+++..+.+.
T Consensus       195 ~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          195 EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence              3333      2   477889999999988766543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.36  E-value=6.6e-11  Score=100.75  Aligned_cols=203  Identities=11%  Similarity=0.093  Sum_probs=123.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEe---------cccccceEEEEEcc-CCCcEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH---------GGHTAKISDFSWNP-NEPWVICS   70 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---------~gh~~~V~~l~~~~-~~~~~l~s   70 (384)
                      |+|+|+|. ++++...+++|++||.....             ..+..+         .++-....+|+|+| ++. ++++
T Consensus        96 ia~d~~g~-l~v~d~~~~~v~~~~~~g~~-------------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~  160 (329)
T 3fvz_A           96 LSIDTDGN-YWVTDVALHQVFKLDPHSKE-------------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVS  160 (329)
T ss_dssp             EEECTTSC-EEEEETTTTEEEEECTTCSS-------------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEE
T ss_pred             EEECCCCC-EEEEECCCCEEEEEeCCCCe-------------EEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEE
Confidence            46889997 88888889999999986411             122222         34555789999999 666 7777


Q ss_pred             Ee-cCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecC-ceeee----cceeeee
Q psy4577          71 VS-EDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD-VTRVI----NEEYKIW  144 (384)
Q Consensus        71 ~s-~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~----d~~v~~w  144 (384)
                      .+ .++.|++|+....              .+..+....... ....+  .-.....++++|+ +..++    ++.|++|
T Consensus       161 d~~~~~~I~~~~~~g~--------------~~~~~~~~g~~~-~~~~~--~~~~p~gia~d~~~g~l~v~d~~~~~I~~~  223 (329)
T 3fvz_A          161 DGYCNSRIVQFSPSGK--------------FVTQWGEESSGS-SPRPG--QFSVPHSLALVPHLDQLCVADRENGRIQCF  223 (329)
T ss_dssp             ECSSCCEEEEECTTSC--------------EEEEECEECCSS-SCCTT--EESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eCCCCCeEEEEcCCCC--------------EEEEeccCCCCC-CCCCc--ccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence            76 6899999995431              111111100000 00000  0123568999998 55444    5667776


Q ss_pred             ccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCC
Q psy4577         145 KKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGD  224 (384)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~  224 (384)
                      +..+......+                                                 .                   
T Consensus       224 ~~~~G~~~~~~-------------------------------------------------~-------------------  235 (329)
T 3fvz_A          224 KTDTKEFVREI-------------------------------------------------K-------------------  235 (329)
T ss_dssp             ETTTCCEEEEE-------------------------------------------------C-------------------
T ss_pred             ECCCCcEEEEE-------------------------------------------------e-------------------
Confidence            65422221100                                                 0                   


Q ss_pred             CCCccCCCCceeEEEEeecCCceEEEEEcC------CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee---cC
Q psy4577         225 FGGFGSVSGKIEIEIKINHEGEVNRARYMP------QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL---RG  295 (384)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~  295 (384)
                                     ...+...+..++|+|      ++. ++++...+..|++||+.        ++..  +..+   .+
T Consensus       236 ---------------~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~--------~g~~--~~~~~~~~~  289 (329)
T 3fvz_A          236 ---------------HASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFS--------SGEI--IDVFKPVRK  289 (329)
T ss_dssp             ---------------CTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETT--------TCCE--EEEECCSSS
T ss_pred             ---------------ccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcC--------CCeE--EEEEcCCCC
Confidence                           001223455666666      332 33334455689999975        4432  3333   35


Q ss_pred             CCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCC
Q psy4577         296 HQKEGYGLSWNPSLNGYLLSASDDHTICLWDINAT  330 (384)
Q Consensus       296 h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~  330 (384)
                      +.....+|+++|+| .++++...+++|++|++...
T Consensus       290 ~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          290 HFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             CCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred             ccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCcc
Confidence            66778999999999 79999999999999998754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.35  E-value=1.7e-10  Score=99.00  Aligned_cols=86  Identities=7%  Similarity=-0.064  Sum_probs=57.7

Q ss_pred             CceEEEEEcCCCCcEEEEEeCC--------CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEE-EEeCCCCCCeEEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPS--------SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG-LSWNPSLNGYLLS  315 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~s~~~~~~l~s  315 (384)
                      ..+..+  +|+|+ .|+.++.+        ..|.+|| .         +.  ......+|...+.. +.|+ ++  ++++
T Consensus       217 ~~~~~~--spdg~-~l~~~~~~~~~~~~~~~~l~~~d-~---------~~--~~~l~~~~~~~~~~~~~~s-dg--~~~~  278 (347)
T 2gop_A          217 VSFYAV--DSDGE-RILLYGKPEKKYMSEHNKLYIYD-G---------KE--VMGILDEVDRGVGQAKIKD-GK--VYFT  278 (347)
T ss_dssp             ESEEEE--EECSS-CEEEEECCSSSCCCSSCEEEEEC-S---------SC--EEESSTTCCSEEEEEEEET-TE--EEEE
T ss_pred             cceeeE--CCCCC-EEEEEEccccCCccccceEEEEC-C---------Cc--eEeccccCCcccCCccEEc-Cc--EEEE
Confidence            334444  89996 55555533        3577776 2         11  12234456677886 9999 75  8899


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEec
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIER  357 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp  357 (384)
                      ++.|+.++|| +.+++       . ..+..+...|.+++|+|
T Consensus       279 ~~~~~~~~l~-~~~g~-------~-~~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          279 LFEEGSVNLY-IWDGE-------I-KPIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             EEETTEEEEE-EESSS-------E-EEEECSSSEEEEEEESS
T ss_pred             EecCCcEEEE-EcCCc-------e-EEEecCCCeEEeeeeeC
Confidence            9999999999 88443       3 33444577899999999

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.35  E-value=4.4e-10  Score=94.89  Aligned_cols=103  Identities=12%  Similarity=0.066  Sum_probs=75.4

Q ss_pred             CceEEEEEc----CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc---cceeeecCCC-CceEEEEeCCCCCCeEEEe
Q psy4577         245 GEVNRARYM----PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC---HPDLRLRGHQ-KEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       245 ~~v~~v~~~----p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~h~-~~i~~~~~s~~~~~~l~s~  316 (384)
                      .....++++    |+++.++++...++.|++||...       .+..   .....+.++. .....++++++| +++++.
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~-------~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~  243 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG-------PAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVAN  243 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE-------TTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEE
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC-------CCccccceEEEECCCCCCCCCCceEECCCC-CEEEEE
Confidence            446788999    99854566666789999999741       1211   1222344444 567899999998 788888


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      ..++.|.+||..+++       .+..+..+...+.+++|+|++..+
T Consensus       244 ~~~~~i~~~d~~~g~-------~~~~~~~~~~~~~~i~~~~dg~~l  282 (314)
T 1pjx_A          244 WGSSHIEVFGPDGGQ-------PKMRIRCPFEKPSNLHFKPQTKTI  282 (314)
T ss_dssp             ETTTEEEEECTTCBS-------CSEEEECSSSCEEEEEECTTSSEE
T ss_pred             cCCCEEEEEcCCCCc-------EeEEEeCCCCCceeEEECCCCCEE
Confidence            888999999998766       556666666789999999999844

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.33  E-value=1.6e-09  Score=98.32  Aligned_cols=271  Identities=10%  Similarity=0.098  Sum_probs=143.8

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcc--cCC
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVV--CVE   86 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~--~~~   86 (384)
                      .++++...+++|.++|..+              .+++..+... ..+..+.|+|+|+ ++++++.|+.|.+||+.  +.+
T Consensus       168 ~~~V~~~~~~~V~viD~~t--------------~~v~~~i~~g-~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~~  231 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGST--------------YEIKTVLDTG-YAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPT  231 (567)
T ss_dssp             EEEEEETTTTEEEEEETTT--------------CCEEEEEECS-SCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCC
T ss_pred             eEEEEeCCCCeEEEEECCC--------------CeEEEEEeCC-CCccceEECCCCC-EEEEEcCCCeEEEEECCCCCCc
Confidence            3667777899999999986              3555555432 3577999999999 55677899999999995  321


Q ss_pred             CccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEe----cCceeee-----cceeeeeccccccccceeec
Q psy4577          87 PFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWL----PDVTRVI-----NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~-----d~~v~~w~~~~~~~~~~~~~  157 (384)
                      ..             ..          +..    ......++|+    |+|+.++     ++++.++|..+......+..
T Consensus       232 ~v-------------~~----------i~~----G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~  284 (567)
T 1qks_A          232 TV-------------AE----------IKI----GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST  284 (567)
T ss_dssp             EE-------------EE----------EEC----CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             Ee-------------EE----------Eec----CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec
Confidence            10             00          000    1123478999    6998776     68888988766544333222


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI  237 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  237 (384)
                      .......  ..+.+..        .+..+.. ++    .+...+..+.   ..+.+....+...           ..+ .
T Consensus       285 ~~~~~~~--~~~~p~~--------rva~i~~-s~----~~~~~vv~~~---~~g~v~~vd~~~~-----------~~~-~  334 (567)
T 1qks_A          285 RGMTYDE--QEYHPEP--------RVAAILA-SH----YRPEFIVNVK---ETGKILLVDYTDL-----------NNL-K  334 (567)
T ss_dssp             CEECTTT--CCEESCC--------CEEEEEE-CS----SSSEEEEEET---TTTEEEEEETTCS-----------SEE-E
T ss_pred             ccccccc--ccccCCC--------ceEEEEE-cC----CCCEEEEEec---CCCeEEEEecCCC-----------ccc-e
Confidence            1100000  0000000        0000000 00    0111111111   1111111111100           011 1


Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee---cCCCCceEEEEeCCCCCCeEE
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL---RGHQKEGYGLSWNPSLNGYLL  314 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~h~~~i~~~~~s~~~~~~l~  314 (384)
                      ...+........+.|+|+++++++++..++.|.++|+.        ++........   ..|.+....+ ++|++..+++
T Consensus       335 v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~--------t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~  405 (567)
T 1qks_A          335 TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK--------EGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWA  405 (567)
T ss_dssp             EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT--------TTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEE
T ss_pred             eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECC--------CCcEEEEEeccCcCCCCccceee-ECCCCCcEEE
Confidence            22233445567889999998666777678999999986        3433222222   1243212122 5887424555


Q ss_pred             Eee-CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577         315 SAS-DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK  361 (384)
Q Consensus       315 s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  361 (384)
                      ++. .+++|.++|..+.+.....+..++++......-..+..||+++.
T Consensus       406 t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~  453 (567)
T 1qks_A          406 TSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY  453 (567)
T ss_dssp             EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSE
T ss_pred             eCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCe
Confidence            554 56899999998743222223366666644333234667888763

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.33  E-value=4.6e-10  Score=92.71  Aligned_cols=215  Identities=9%  Similarity=0.056  Sum_probs=136.1

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccc-cceEEEEEccCCCcEEEEEecCCeEEEEEcccCCC
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEP   87 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~-~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~   87 (384)
                      .+|++++.|+.|.+||.++              .+.+..+..+. ..+.++++.|+|+ +++  +.++.|..||. +++ 
T Consensus         6 ~~lv~~~~~~~v~~~d~~t--------------G~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~-   66 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDT--------------KEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGR-   66 (276)
T ss_dssp             EEEEECTTCSEEEEEETTT--------------TEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSC-
T ss_pred             cEEEeeCCCCEEEEEECCC--------------CeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCC-
Confidence            4899999999999999866              36777777665 4789999999999 766  45788999998 431 


Q ss_pred             ccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeecc---eeeeeccccccccceeecccccccc
Q psy4577          88 FDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINE---EYKIWKKNTPFLYDLVMTHALEWPS  164 (384)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~---~v~~w~~~~~~~~~~~~~~~~~~~~  164 (384)
                                    .+|+...+.          ...+.++.+.|+|+.++..   .-+++.                   
T Consensus        67 --------------~~W~~~~~~----------~~~~~~~~~~~dG~~lv~~~~~~~~v~~-------------------  103 (276)
T 3no2_A           67 --------------ELWNIAAPA----------GCEMQTARILPDGNALVAWCGHPSTILE-------------------  103 (276)
T ss_dssp             --------------EEEEEECCT----------TCEEEEEEECTTSCEEEEEESTTEEEEE-------------------
T ss_pred             --------------EEEEEcCCC----------CccccccEECCCCCEEEEecCCCCEEEE-------------------
Confidence                          334332210          1235678888888776511   111110                   


Q ss_pred             eeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecC
Q psy4577         165 LTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHE  244 (384)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  244 (384)
                          +.+++.                         .+..+.+.            ...                  ..+.
T Consensus       104 ----vd~~Gk-------------------------~l~~~~~~------------~~~------------------~~~~  124 (276)
T 3no2_A          104 ----VNMKGE-------------------------VLSKTEFE------------TGI------------------ERPH  124 (276)
T ss_dssp             ----ECTTSC-------------------------EEEEEEEC------------CSC------------------SSGG
T ss_pred             ----EeCCCC-------------------------EEEEEecc------------CCC------------------Cccc
Confidence                000000                         01111100            000                  0011


Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      .....+++.++|. ++++...++.|..||.         .+.  .+.++..+ ....++...++| +++++++.+++|..
T Consensus       125 ~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~---------~G~--~~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~  190 (276)
T 3no2_A          125 AQFRQINKNKKGN-YLVPLFATSEVREIAP---------NGQ--LLNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQ  190 (276)
T ss_dssp             GSCSCCEECTTSC-EEEEETTTTEEEEECT---------TSC--EEEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEE
T ss_pred             ccccCceECCCCC-EEEEecCCCEEEEECC---------CCC--EEEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEE
Confidence            1234456788885 8899999999999997         333  34455443 346678888998 79999998899999


Q ss_pred             EecCCCCCCCccccceeeeeccC------CcEeEEEEecCCCccccc
Q psy4577         325 WDINATPKENRVIDAKTIFTGHT------AVVELELIERLTKKADPV  365 (384)
Q Consensus       325 wd~~~~~~~~~~~~~~~~~~~h~------~~v~~~~~sp~~~~~~~~  365 (384)
                      +|..+++       .+.++..+.      ..+..++.-++|....+.
T Consensus       191 ~d~~tG~-------~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          191 LNLESNR-------IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             ECTTTCC-------EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             EeCcCCc-------EEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            9999887       666665321      226777777777654443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.31  E-value=3.4e-09  Score=89.98  Aligned_cols=105  Identities=7%  Similarity=-0.056  Sum_probs=73.6

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCC-Cc---cceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNG-EC---HPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~---~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      ..+.++|+|+++.++++.+.++.|.+|++...      .+ ..   ..+..+.........++++++| .+.++...++.
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~------~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~  252 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR------TGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGA  252 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTT------TCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTE
T ss_pred             ccCCeEEcCCCCEEEEEECCCCEEEEEEcccc------cCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCE
Confidence            46789999999756666667889999997410      12 11   1122333344567889999998 67777767789


Q ss_pred             EEEEecCCCCCCCccccceeeeeccCCcEeEEEEe-cCCCccccc
Q psy4577         322 ICLWDINATPKENRVIDAKTIFTGHTAVVELELIE-RLTKKADPV  365 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~~  365 (384)
                      |.+||. .++       .+..+..+...+++++|+ |++..+...
T Consensus       253 v~~~d~-~g~-------~~~~i~~~~~~~~~~af~g~d~~~L~vt  289 (326)
T 2ghs_A          253 VDRYDT-DGN-------HIARYEVPGKQTTCPAFIGPDASRLLVT  289 (326)
T ss_dssp             EEEECT-TCC-------EEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             EEEECC-CCC-------EEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence            999998 454       666666666679999998 887765433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.28  E-value=9.4e-09  Score=85.94  Aligned_cols=256  Identities=7%  Similarity=-0.050  Sum_probs=142.5

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      +++|+|. ++++...++.|.+||... .             ........+...+.++++.+++. ++++...++.|..|+
T Consensus        21 ~~d~~g~-l~v~~~~~~~v~~~d~~~-~-------------~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~   84 (299)
T 2z2n_A           21 TVSDKGK-VWITQHKANMISCINLDG-K-------------ITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKIGRIT   84 (299)
T ss_dssp             EECTTSC-EEEEETTTTEEEEECTTC-C-------------EEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred             EECCCCC-EEEEecCCCcEEEEcCCC-C-------------eEEecCCcccCceeeEEECCCCC-EEEeCCCCCeEEEEC
Confidence            4678886 666665678999999762 1             22222233456799999999998 766766688899998


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~  157 (384)
                      ....               +..+....           ....+.++++.+++...+    ++.+..|+. ..........
T Consensus        85 ~~g~---------------~~~~~~~~-----------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~  137 (299)
T 2z2n_A           85 KKGI---------------IKEYTLPN-----------PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP  137 (299)
T ss_dssp             TTSC---------------EEEEECSS-----------TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred             CCCc---------------EEEEeCCC-----------cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC
Confidence            7521               11111110           023466888999887655    456777665 2221111000


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI  237 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  237 (384)
                      .... ....+.+.+                        ...+.+....    ...  +..+|.           .+.+..
T Consensus       138 ~~~~-~~~~i~~~~------------------------~g~l~v~~~~----~~~--i~~~~~-----------~g~~~~  175 (299)
T 2z2n_A          138 NKGS-YPSFITLGS------------------------DNALWFTENQ----NNA--IGRITE-----------SGDITE  175 (299)
T ss_dssp             STTC-CEEEEEECT------------------------TSCEEEEETT----TTE--EEEECT-----------TCCEEE
T ss_pred             CCCC-CCceEEEcC------------------------CCCEEEEeCC----CCE--EEEEcC-----------CCcEEE
Confidence            0000 000111110                        1111111100    000  011111           112211


Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      .........+.++++++++. ++++...++.|.+||..         +.... ..+..+...+.+++++++| +++++..
T Consensus       176 ~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~---------g~~~~-~~~~~~~~~~~~i~~~~~g-~l~v~~~  243 (299)
T 2z2n_A          176 FKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITTS---------GEITE-FKIPTPNARPHAITAGAGI-DLWFTEW  243 (299)
T ss_dssp             EECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTT---------CCEEE-EECSSTTCCEEEEEECSTT-CEEEEET
T ss_pred             eeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECCC---------CcEEE-EECCCCCCCceeEEECCCC-CEEEecc
Confidence            11122345678999999985 77776678899999972         22221 2234455678999999998 6777776


Q ss_pred             CCCcEEEEecCCCCCCCccccceee--eeccCCcEeEEEEecCCCcccc
Q psy4577         318 DDHTICLWDINATPKENRVIDAKTI--FTGHTAVVELELIERLTKKADP  364 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~sp~~~~~~~  364 (384)
                      .++.|..||.. ++        +..  +..+...+.++++ +++....+
T Consensus       244 ~~~~i~~~d~~-g~--------~~~~~~~~~~~~~~~i~~-~~g~l~v~  282 (299)
T 2z2n_A          244 GANKIGRLTSN-NI--------IEEYPIQIKSAEPHGICF-DGETIWFA  282 (299)
T ss_dssp             TTTEEEEEETT-TE--------EEEEECSSSSCCEEEEEE-CSSCEEEE
T ss_pred             CCceEEEECCC-Cc--------eEEEeCCCCCCccceEEe-cCCCEEEE
Confidence            78999999983 32        222  2344567899999 88775444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.27  E-value=1.3e-10  Score=101.52  Aligned_cols=25  Identities=16%  Similarity=0.045  Sum_probs=21.7

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCC
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSK   27 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~   27 (384)
                      .|+|+|+ .||.++.++.|++||+.+
T Consensus        87 ~~spdg~-~l~~~~~~~~l~~~d~~~  111 (396)
T 3c5m_A           87 FISTDER-AFFYVKNELNLMKVDLET  111 (396)
T ss_dssp             EECTTSS-EEEEEETTTEEEEEETTT
T ss_pred             eECCCCC-EEEEEEcCCcEEEEECCC
Confidence            5899997 688888888999999875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.25  E-value=7.3e-09  Score=88.23  Aligned_cols=69  Identities=6%  Similarity=-0.007  Sum_probs=51.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecC----Ce
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED----NI   76 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D----~~   76 (384)
                      ++|+|++. +++++..++.|.+||..+.              +.......+...+.+++|+|++. ++++...+    +.
T Consensus        50 ~~~~~~g~-l~~~~~~~~~i~~~d~~~~--------------~~~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~  113 (333)
T 2dg1_A           50 LNFDRQGQ-LFLLDVFEGNIFKINPETK--------------EIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGG  113 (333)
T ss_dssp             EEECTTSC-EEEEETTTCEEEEECTTTC--------------CEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCE
T ss_pred             cEECCCCC-EEEEECCCCEEEEEeCCCC--------------cEEEEeeCCCCCcceEEECCCCc-EEEEeCCCCCCCce
Confidence            36889986 7888888999999998751              22222234567899999999998 77666666    68


Q ss_pred             EEEEEcccC
Q psy4577          77 MQILSVVCV   85 (384)
Q Consensus        77 i~vwd~~~~   85 (384)
                      |.+||..++
T Consensus       114 i~~~d~~~~  122 (333)
T 2dg1_A          114 IFAATENGD  122 (333)
T ss_dssp             EEEECTTSC
T ss_pred             EEEEeCCCC
Confidence            999998764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.22  E-value=1.3e-08  Score=92.52  Aligned_cols=290  Identities=14%  Similarity=0.027  Sum_probs=146.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEc----cCCCcEEEEEecCCe
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN----PNEPWVICSVSEDNI   76 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~----~~~~~~l~s~s~D~~   76 (384)
                      +.||||++ +|++++.|+.|.+||+....            .+.+..+.... ....++|+    |+|++++++.-.+++
T Consensus       202 v~~SpDGr-~lyv~~~dg~V~viD~~~~t------------~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~  267 (567)
T 1qks_A          202 SRLSASGR-YLFVIGRDGKVNMIDLWMKE------------PTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQ  267 (567)
T ss_dssp             EEECTTSC-EEEEEETTSEEEEEETTSSS------------CCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred             eEECCCCC-EEEEEcCCCeEEEEECCCCC------------CcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCe
Confidence            46899998 67778899999999995100            24444444323 46799999    699966666667799


Q ss_pred             EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccc
Q psy4577          77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFL  151 (384)
Q Consensus        77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~  151 (384)
                      |.++|..+.+.+             +......... .....| .+..+.++..++++..++     .+++.++|......
T Consensus       268 v~ViD~~t~~~~-------------~~i~~~~~~~-~~~~~~-p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~  332 (567)
T 1qks_A          268 YVIMDGETLEPK-------------KIQSTRGMTY-DEQEYH-PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN  332 (567)
T ss_dssp             EEEEETTTCCEE-------------EEEECCEECT-TTCCEE-SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred             EEEEECCCCcEE-------------EEEecccccc-cccccc-CCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence            999998775322             1111100000 000011 022456777777765443     57777776644321


Q ss_pred             cceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCC
Q psy4577         152 YDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSV  231 (384)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  231 (384)
                      ... ...........+.|.+++.          .+......   .+.+.+                +|..          
T Consensus       333 ~~v-~~i~~~~~~~d~~~~pdgr----------~~~va~~~---sn~V~V----------------iD~~----------  372 (567)
T 1qks_A          333 LKT-TEISAERFLHDGGLDGSHR----------YFITAANA---RNKLVV----------------IDTK----------  372 (567)
T ss_dssp             EEE-EEEECCSSEEEEEECTTSC----------EEEEEEGG---GTEEEE----------------EETT----------
T ss_pred             cee-eeeeccccccCceECCCCC----------EEEEEeCC---CCeEEE----------------EECC----------
Confidence            110 0000000001122222211          11111100   111111                1111          


Q ss_pred             CCceeEEEE----eecCCceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeC
Q psy4577         232 SGKIEIEIK----INHEGEVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWN  306 (384)
Q Consensus       232 ~~~~~~~~~----~~~~~~v~~v~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s  306 (384)
                      .+++.....    ..|.+.-..+ ++|++..+++++. .++.|.++|.......   ....+.+..+......-..++.+
T Consensus       373 t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~---~~~~kvv~~i~~~g~g~~~i~~~  448 (567)
T 1qks_A          373 EGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP---DNAWKILDSFPALGGGSLFIKTH  448 (567)
T ss_dssp             TTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT---TTBTSEEEEEECSCSCCCCEECC
T ss_pred             CCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc---cccCEEEEEEecCCCCCEEEEeC
Confidence            111111111    1344322222 5787544666654 4689999998631100   11234455665543444568899


Q ss_pred             CCCCCeEEEeeC-------CCcEEEEecCCCCCCCccccceeee--------eccCCcEeEEEEecCCCccccc
Q psy4577         307 PSLNGYLLSASD-------DHTICLWDINATPKENRVIDAKTIF--------TGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       307 ~~~~~~l~s~s~-------Dg~i~iwd~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      |++ ++|.....       .++|.++|+.+.+..+... .+..+        ..-...+..+.|+|+|+.+-..
T Consensus       449 p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s  520 (567)
T 1qks_A          449 PNS-QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP-EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS  520 (567)
T ss_dssp             TTC-SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC-CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred             CCC-CeEEEecCCCCCcccCceEEEEECCcccccccCC-CcEEeccccccccCCCCcceEeeeECCCCCEEEEE
Confidence            998 56555442       3699999998771100000 11222        1123568899999999976543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.21  E-value=9.5e-09  Score=89.92  Aligned_cols=95  Identities=11%  Similarity=-0.018  Sum_probs=67.8

Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC---------------CceEEEEeCCCCCCeE
Q psy4577         249 RARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ---------------KEGYGLSWNPSLNGYL  313 (384)
Q Consensus       249 ~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---------------~~i~~~~~s~~~~~~l  313 (384)
                      .++|+|++.+++++-..++.|+.|+..         +.   ...+.++.               .....++++|+| +++
T Consensus       271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~---------g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~ly  337 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQNLSSVYKITPD---------GE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFY  337 (409)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTT---------CC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEE
T ss_pred             cEEEeCCCCEEEEEeCCCCEEEEEecC---------CC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEE
Confidence            899999654688888888999999874         32   12222221               347899999999 688


Q ss_pred             EEee-CCCcEEEEecCCCCCCCccccceeeeecc---------------CCcEeEEEEecCCCcccc
Q psy4577         314 LSAS-DDHTICLWDINATPKENRVIDAKTIFTGH---------------TAVVELELIERLTKKADP  364 (384)
Q Consensus       314 ~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h---------------~~~v~~~~~sp~~~~~~~  364 (384)
                      ++-+ .+++|+.|++.++        .+.++.++               -.....+++.|++....+
T Consensus       338 vad~~~~~~I~~~~~~~G--------~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa  396 (409)
T 3hrp_A          338 IVDGFKGYCLRKLDILDG--------YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA  396 (409)
T ss_dssp             EEETTTTCEEEEEETTTT--------EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE
T ss_pred             EEeCCCCCEEEEEECCCC--------EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE
Confidence            8888 8999999998766        34444444               235788999998765443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.20  E-value=2.7e-09  Score=100.63  Aligned_cols=109  Identities=8%  Similarity=-0.006  Sum_probs=64.7

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeC-----CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTP-----SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      |...+..+.|+|+|+ +|+.++.     +..|++||+.......  .+. .....+..+...+.. .|+|+| ..|+..+
T Consensus       231 ~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~--~~~-~~~~~l~~~~~~~~~-~~s~dg-~~l~~~s  304 (710)
T 2xdw_A          231 EPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGI--TGI-LKWVKLIDNFEGEYD-YVTNEG-TVFTFKT  304 (710)
T ss_dssp             CTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSS--CSS-CCCEEEECSSSSCEE-EEEEET-TEEEEEE
T ss_pred             CCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECccccccc--CCc-cceEEeeCCCCcEEE-EEeccC-CEEEEEE
Confidence            345577899999997 5554443     5689999985200000  021 123455666665655 488998 4555444


Q ss_pred             CC----CcEEEEecCCCCCCCccccceeeeeccCC--cEeEEEEecCCCcc
Q psy4577         318 DD----HTICLWDINATPKENRVIDAKTIFTGHTA--VVELELIERLTKKA  362 (384)
Q Consensus       318 ~D----g~i~iwd~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~  362 (384)
                      .+    +.|.+||+.++...     ....+..|..  .+.+++|++++..+
T Consensus       305 ~~~~~~~~l~~~d~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~lv  350 (710)
T 2xdw_A          305 NRHSPNYRLINIDFTDPEES-----KWKVLVPEHEKDVLEWVACVRSNFLV  350 (710)
T ss_dssp             CTTCTTCEEEEEETTSCCGG-----GCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred             CCCCCCCEEEEEeCCCCCcc-----cceeccCCCCCCeEEEEEEEcCCEEE
Confidence            42    36999999876410     1244444543  68889998665543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.19  E-value=1.9e-09  Score=102.19  Aligned_cols=93  Identities=5%  Similarity=-0.134  Sum_probs=59.7

Q ss_pred             cCCCCcEEEEEeC----CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecC
Q psy4577         253 MPQNPCVIATKTP----SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN  328 (384)
Q Consensus       253 ~p~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~  328 (384)
                      +|+++ .|+..+.    ++.|.+||+.        .+.......+..+...+..++|+ ++ .++++...|+..+||.+.
T Consensus       324 ~~dg~-~l~~~s~~~~~~~~l~~~d~~--------~~~~~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          324 DGVGD-QLWFVSGDGAPLKKIVRVDLS--------GSTPRFDTVVPESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EEETT-EEEEEECTTCTTCEEEEEECS--------SSSCEEEEEECCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEE
T ss_pred             eccCC-EEEEEECCCCCCCEEEEEeCC--------CCccccEEEecCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEe
Confidence            47786 4444444    3459999975        21111122334455567778887 44 688999999988888765


Q ss_pred             -CCCCCCccccceeeeec-cCCcEeEEEEecCCCccc
Q psy4577         329 -ATPKENRVIDAKTIFTG-HTAVVELELIERLTKKAD  363 (384)
Q Consensus       329 -~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~  363 (384)
                       .++       ....+.. +.+.|..+.|+|+++.+.
T Consensus       393 ~~g~-------~~~~l~~~~~~~v~~~~~s~d~~~l~  422 (741)
T 1yr2_A          393 LDGK-------PAGAVSLPGIGSASGLSGRPGDRHAY  422 (741)
T ss_dssp             TTSC-------EEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred             CCCC-------ceeeccCCCCeEEEEeecCCCCCEEE
Confidence             333       4455543 356789999999987655

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.18  E-value=4.2e-09  Score=86.75  Aligned_cols=75  Identities=4%  Similarity=-0.085  Sum_probs=56.8

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      ..+.+++++++| +++++...++.|++|+..         +.... .....+...+.+++++|+| +++++...+++|++
T Consensus       192 ~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~---------~~~~~-~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~  259 (270)
T 1rwi_B          192 TAPWGIAVDEAG-TVYVTEHNTNQVVKLLAG---------STTST-VLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVK  259 (270)
T ss_dssp             CSEEEEEECTTC-CEEEEETTTSCEEEECTT---------CSCCE-ECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEE
T ss_pred             CCceEEEECCCC-CEEEEECCCCcEEEEcCC---------CCcce-eeccCCCCCceeEEECCCC-CEEEEECCCCEEEE
Confidence            456789999999 588887788999999974         22111 1122233568999999999 79999999999999


Q ss_pred             EecCCCC
Q psy4577         325 WDINATP  331 (384)
Q Consensus       325 wd~~~~~  331 (384)
                      ++....+
T Consensus       260 ~~~~~~~  266 (270)
T 1rwi_B          260 LTSLEHH  266 (270)
T ss_dssp             ECCCGGG
T ss_pred             EcCCCcc
Confidence            9998764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.18  E-value=1.3e-08  Score=86.53  Aligned_cols=63  Identities=8%  Similarity=-0.045  Sum_probs=47.3

Q ss_pred             CCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577           7 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV   85 (384)
Q Consensus         7 ~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~   85 (384)
                      +..++++...++.|.+||..+              .+.+..+.. ......+++++++. +.++...++.|.+||+.++
T Consensus        53 ~~~lyv~~~~~~~v~viD~~t--------------~~~~~~i~~-~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~  115 (328)
T 3dsm_A           53 DGIGWIVVNNSHVIFAIDINT--------------FKEVGRITG-FTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTY  115 (328)
T ss_dssp             TTEEEEEEGGGTEEEEEETTT--------------CCEEEEEEC-CSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTT
T ss_pred             CCEEEEEEcCCCEEEEEECcc--------------cEEEEEcCC-CCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCC
Confidence            344667777789999999986              345455543 35788999999985 7666658999999999875

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.15  E-value=2.8e-09  Score=100.28  Aligned_cols=95  Identities=7%  Similarity=-0.086  Sum_probs=56.3

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCC----cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee-
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSS----DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS-  317 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s-  317 (384)
                      |...+.++.|+|+|+ +|+.++.++    .|++|+..        .+.   ...+..+...+....| ++|. ++++.. 
T Consensus       225 ~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~--------~~~---~~~l~~~~~~~~~~~~-~~g~-l~~~s~~  290 (695)
T 2bkl_A          225 DPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPG--------EKD---FRLLVKGVGAKYEVHA-WKDR-FYVLTDE  290 (695)
T ss_dssp             CTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTT--------CSS---CEEEEECSSCCEEEEE-ETTE-EEEEECT
T ss_pred             CCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCC--------CCc---eEEeecCCCceEEEEe-cCCc-EEEEECC
Confidence            455788999999997 555445444    55555432        222   3345556556666667 6774 555554 


Q ss_pred             --CCCcEEEEecCCCCCCCccccceeeeecc--CCcEeEEEEe
Q psy4577         318 --DDHTICLWDINATPKENRVIDAKTIFTGH--TAVVELELIE  356 (384)
Q Consensus       318 --~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s  356 (384)
                        .++.|++||+.++...     ....+..|  ...|.+++|+
T Consensus       291 ~~~~~~l~~~d~~~~~~~-----~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          291 GAPRQRVFEVDPAKPARA-----SWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             TCTTCEEEEEBTTBCSGG-----GCEEEECCCSSCEEEEEEEE
T ss_pred             CCCCCEEEEEeCCCCCcc-----CCeEEecCCCCCeEEEEEEE
Confidence              3589999999876410     12333322  3456777776

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.13  E-value=7e-09  Score=88.83  Aligned_cols=87  Identities=7%  Similarity=0.103  Sum_probs=55.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCC-------cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC
Q psy4577         246 EVNRARYMPQNPCVIATKTPSS-------DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      .+..++|+|++  ++++++.++       ...||.+.        .+..   ..+..+ ..+..+  +|+| ++|+.++.
T Consensus       172 ~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--------~~~~---~~l~~~-~~~~~~--spdg-~~l~~~~~  234 (347)
T 2gop_A          172 RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--------DGKE---EKMFEK-VSFYAV--DSDG-ERILLYGK  234 (347)
T ss_dssp             TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--------TTEE---EEEEEE-ESEEEE--EECS-SCEEEEEC
T ss_pred             CcccccCCCCe--EEEEEecccccccccccccEEEeC--------CCce---EEeccC-cceeeE--CCCC-CEEEEEEc
Confidence            67899999998  666665542       45666653        1222   233334 445544  9999 67777765


Q ss_pred             C--------CcEEEEecCCCCCCCccccceeeeeccCCcEeE-EEEecCC
Q psy4577         319 D--------HTICLWDINATPKENRVIDAKTIFTGHTAVVEL-ELIERLT  359 (384)
Q Consensus       319 D--------g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~sp~~  359 (384)
                      +        ..|++||  +++       ......+|...+.. +.|+ ++
T Consensus       235 ~~~~~~~~~~~l~~~d--~~~-------~~~l~~~~~~~~~~~~~~s-dg  274 (347)
T 2gop_A          235 PEKKYMSEHNKLYIYD--GKE-------VMGILDEVDRGVGQAKIKD-GK  274 (347)
T ss_dssp             CSSSCCCSSCEEEEEC--SSC-------EEESSTTCCSEEEEEEEET-TE
T ss_pred             cccCCccccceEEEEC--CCc-------eEeccccCCcccCCccEEc-Cc
Confidence            4        3688888  443       44444566778886 8998 76

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.12  E-value=1.6e-08  Score=85.03  Aligned_cols=65  Identities=12%  Similarity=0.101  Sum_probs=48.7

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .|+|+++.+++++..++.|..|+...               . ...+..+...+.+++|+++|. ++++...++.|.+|+
T Consensus        51 ~~~~~g~~l~~~d~~~~~i~~~~~~g---------------~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           51 AWWEAQRTLVWSDLVGRRVLGWREDG---------------T-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSD  113 (305)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEETTS---------------C-EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred             eEeCCCCEEEEEECCCCEEEEEeCCC---------------C-EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEEC
Confidence            57888876788888899999998742               2 223334556799999999999 765555668899988


Q ss_pred             cc
Q psy4577          82 VV   83 (384)
Q Consensus        82 ~~   83 (384)
                      ..
T Consensus       114 ~~  115 (305)
T 3dr2_A          114 AD  115 (305)
T ss_dssp             TT
T ss_pred             CC
Confidence            75

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.10  E-value=1.5e-07  Score=78.52  Aligned_cols=256  Identities=9%  Similarity=-0.038  Sum_probs=139.5

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      .+++++. +.++...++.|.+||... .             .....+..+...+.++++.+++. +.++...++.|..+|
T Consensus        26 ~~d~~g~-l~v~~~~~~~v~~~~~~~-~-------------~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           26 TSSEDGK-VWFTQHKANKISSLDQSG-R-------------IKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKLS   89 (300)
T ss_dssp             EECTTSC-EEEEETTTTEEEEECTTS-C-------------EEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred             eECCCCC-EEEEcCCCCeEEEECCCC-c-------------eEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEEC
Confidence            4567776 667666788999999762 1             11122333446799999999998 766666678899988


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~  157 (384)
                      .. ++.              ..+.....           ...+.++++.+++...+    ++.+..++.. .........
T Consensus        90 ~~-g~~--------------~~~~~~~~-----------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~  142 (300)
T 2qc5_A           90 KK-GGF--------------TEYPLPQP-----------DSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP  142 (300)
T ss_dssp             TT-SCE--------------EEEECSST-----------TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS
T ss_pred             CC-CCe--------------EEecCCCC-----------CCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC
Confidence            76 311              11111100           23466888888887655    3456666554 221111000


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI  237 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  237 (384)
                      ..... ...+.+.+                        ...+.+....    ...  +..+|.           .+.+..
T Consensus       143 ~~~~~-~~~i~~d~------------------------~g~l~v~~~~----~~~--i~~~~~-----------~g~~~~  180 (300)
T 2qc5_A          143 NKGSY-PAFITLGS------------------------DNALWFTENQ----NNS--IGRITN-----------TGKLEE  180 (300)
T ss_dssp             STTCC-EEEEEECT------------------------TSSEEEEETT----TTE--EEEECT-----------TCCEEE
T ss_pred             CCCCC-ceeEEECC------------------------CCCEEEEecC----CCe--EEEECC-----------CCcEEE
Confidence            00000 00011100                        1111111100    000  001111           112211


Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      .....+...+.++++++++ +++++...++.|.+||..         +.... ..+..+...+.+++++++| +++++..
T Consensus       181 ~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~---------g~~~~-~~~~~~~~~~~~i~~d~~g-~l~v~~~  248 (300)
T 2qc5_A          181 YPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTT---------GEISE-YDIPTPNARPHAITAGKNS-EIWFTEW  248 (300)
T ss_dssp             EECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTT---------CCEEE-EECSSTTCCEEEEEECSTT-CEEEEET
T ss_pred             eeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCC---------CcEEE-EECCCCCCCceEEEECCCC-CEEEecc
Confidence            1111234568899999998 477776667789999872         32222 1233445678999999998 6777776


Q ss_pred             CCCcEEEEecCCCCCCCccccce-eeeeccCCcEeEEEEecCCCcc
Q psy4577         318 DDHTICLWDINATPKENRVIDAK-TIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      .++.|..||.. ++       .. ..+......+.++++.++|...
T Consensus       249 ~~~~i~~~~~~-g~-------~~~~~~~~~~~~~~~i~~~~~g~l~  286 (300)
T 2qc5_A          249 GANQIGRITND-NT-------IQEYQLQTENAEPHGITFGKDGSVW  286 (300)
T ss_dssp             TTTEEEEECTT-SC-------EEEEECCSTTCCCCCEEECTTSCEE
T ss_pred             CCCeEEEECCC-Cc-------EEEEECCccCCccceeEeCCCCCEE
Confidence            78999999983 32       21 1122234567888998888743

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.09  E-value=3.9e-09  Score=99.12  Aligned_cols=101  Identities=9%  Similarity=-0.059  Sum_probs=59.1

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCC---CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC-
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPS---SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD-  318 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~-  318 (384)
                      +....... +++++..+++....+   +.|..+|+.        .+.......+..|...+.  .|++++ ..|+.... 
T Consensus       279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~--------~~~~~~~~~l~~~~~~~~--~~s~~g-~~lv~~~~~  346 (693)
T 3iuj_A          279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA--------NPGPAHWRDLIPERQQVL--TVHSGS-GYLFAEYMV  346 (693)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT--------SCCGGGCEEEECCCSSCE--EEEEET-TEEEEEEEE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC--------CCCccccEEEecCCCCEE--EEEEEC-CEEEEEEEE
Confidence            33334343 556665566665544   678888885        333222335566666565  899998 56655554 


Q ss_pred             CC--cEEEEecCCCCCCCccccceeeee-ccCCcEeEEEEecCCCccc
Q psy4577         319 DH--TICLWDINATPKENRVIDAKTIFT-GHTAVVELELIERLTKKAD  363 (384)
Q Consensus       319 Dg--~i~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~  363 (384)
                      |+  .|++||+.++.        ...+. ...+.+..+.++|+++.+.
T Consensus       347 ~g~~~l~~~d~~g~~--------~~~l~~p~~~~~~~~~~~~d~~~l~  386 (693)
T 3iuj_A          347 DATARVEQFDYEGKR--------VREVALPGLGSVSGFNGKHDDPALY  386 (693)
T ss_dssp             TTEEEEEEECTTSCE--------EEEECCSSSSEEEECCCCTTCSCEE
T ss_pred             CCeeEEEEEECCCCe--------eEEeecCCCceEEeeecCCCCCEEE
Confidence            54  68899987542        23332 2334566777777776544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.08  E-value=3.5e-08  Score=84.97  Aligned_cols=53  Identities=15%  Similarity=0.147  Sum_probs=42.1

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC
Q psy4577         247 VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL  309 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~  309 (384)
                      +.+++|+|+++ +|++++. +.|.+||..        ++..+.+..+..+......++++|+|
T Consensus       307 p~~ia~spdg~-~l~v~n~-~~v~v~D~~--------t~~l~~~~~i~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          307 ALSMTIDQQRN-LMLTLDG-GNVNVYDIS--------QPEPKLLRTIEGAAEASLQVQFHPVG  359 (361)
T ss_dssp             CCEEEEETTTT-EEEEECS-SCEEEEECS--------SSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred             eeEEEECCCCC-EEEEeCC-CeEEEEECC--------CCcceeeEEeccCCCCcEEEEecCCC
Confidence            99999999997 6777665 999999986        44334556666677778899999998

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.07  E-value=1.7e-08  Score=84.37  Aligned_cols=188  Identities=11%  Similarity=-0.046  Sum_probs=113.7

Q ss_pred             cccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEE
Q psy4577          49 GGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ  128 (384)
Q Consensus        49 ~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  128 (384)
                      ..+.....+++|+|++..+++++..++.|..|+..++               ...+...             ...+.+++
T Consensus        24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------------~~~~~~~-------------~~~~~~l~   75 (296)
T 3e5z_A           24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------------LSPEMHP-------------SHHQNGHC   75 (296)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---------------EEEEESS-------------CSSEEEEE
T ss_pred             ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---------------eEEEECC-------------CCCcceee
Confidence            3455678899999999867788888999999998763               1222111             23467899


Q ss_pred             EecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEe
Q psy4577         129 WLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASV  204 (384)
Q Consensus       129 ~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  204 (384)
                      ++|+|..++    ++.+.+|+..+.....+...                                               
T Consensus        76 ~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~-----------------------------------------------  108 (296)
T 3e5z_A           76 LNKQGHLIACSHGLRRLERQREPGGEWESIADS-----------------------------------------------  108 (296)
T ss_dssp             ECTTCCEEEEETTTTEEEEECSTTCCEEEEECE-----------------------------------------------
T ss_pred             ECCCCcEEEEecCCCeEEEEcCCCCcEEEEeec-----------------------------------------------
Confidence            999987665    24555555432221000000                                               


Q ss_pred             ecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEE----EeC-------------CC
Q psy4577         205 QLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIAT----KTP-------------SS  267 (384)
Q Consensus       205 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s----~s~-------------dg  267 (384)
                                                        ........++.++++|+|. ++++    |+.             .+
T Consensus       109 ----------------------------------~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~  153 (296)
T 3e5z_A          109 ----------------------------------FEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGR  153 (296)
T ss_dssp             ----------------------------------ETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred             ----------------------------------cCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCc
Confidence                                              0000123466789999995 7777    321             23


Q ss_pred             cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecC-CCCCCCccccceeeeecc
Q psy4577         268 DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN-ATPKENRVIDAKTIFTGH  346 (384)
Q Consensus       268 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~h  346 (384)
                      .|..++.         .+   .+..+..+......++|+|++ ++|++.+.++.|++||+. .++..    .....+..+
T Consensus       154 ~l~~~~~---------~g---~~~~~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~----~~~~~~~~~  216 (296)
T 3e5z_A          154 WVFRLAP---------DG---TLSAPIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETE----YQGVHFTVE  216 (296)
T ss_dssp             EEEEECT---------TS---CEEEEECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEE----EEEEEECCS
T ss_pred             EEEEECC---------CC---CEEEeecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCc----CCCeEeeCC
Confidence            4444443         22   223445566678899999998 677888889999999997 33300    012222234


Q ss_pred             CCcEeEEEEecCCCccc
Q psy4577         347 TAVVELELIERLTKKAD  363 (384)
Q Consensus       347 ~~~v~~~~~sp~~~~~~  363 (384)
                      ...+..+++.++|....
T Consensus       217 ~~~p~~i~~d~~G~l~v  233 (296)
T 3e5z_A          217 PGKTDGLRVDAGGLIWA  233 (296)
T ss_dssp             SSCCCSEEEBTTSCEEE
T ss_pred             CCCCCeEEECCCCCEEE
Confidence            45566788888876433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.01  E-value=3.6e-07  Score=76.23  Aligned_cols=231  Identities=7%  Similarity=-0.041  Sum_probs=123.1

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      +++|++. ++++...++.|..||...              ......+..+...+.++++.+++. ++++...++.|.+||
T Consensus        63 ~~~~~g~-l~v~~~~~~~i~~~~~~g--------------~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d  126 (299)
T 2z2n_A           63 TISSDGE-VWFTENAANKIGRITKKG--------------IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRIT  126 (299)
T ss_dssp             EECTTSC-EEEEETTTTEEEEECTTS--------------CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred             EECCCCC-EEEeCCCCCeEEEECCCC--------------cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEEC
Confidence            5678876 677766688899998752              111222223445789999999998 776766788999998


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeec
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~  157 (384)
                      . +++              +..+.....           ...+..+++.+++...+    ++.+..++. +.........
T Consensus       127 ~-~g~--------------~~~~~~~~~-----------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~  179 (299)
T 2z2n_A          127 D-DGK--------------IREYELPNK-----------GSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIP  179 (299)
T ss_dssp             T-TCC--------------EEEEECSST-----------TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS
T ss_pred             C-CCC--------------EEEecCCCC-----------CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCC
Confidence            7 321              111111100           23466888999887655    356666665 3222111000


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI  237 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  237 (384)
                      ..... ...+.+.+                        ...+.+....    ...  +..+|.           .+.+..
T Consensus       180 ~~~~~-~~~i~~~~------------------------~g~l~v~~~~----~~~--i~~~~~-----------~g~~~~  217 (299)
T 2z2n_A          180 TPASG-PVGITKGN------------------------DDALWFVEII----GNK--IGRITT-----------SGEITE  217 (299)
T ss_dssp             STTCC-EEEEEECT------------------------TSSEEEEETT----TTE--EEEECT-----------TCCEEE
T ss_pred             CCCCc-ceeEEECC------------------------CCCEEEEccC----Cce--EEEECC-----------CCcEEE
Confidence            00000 00111110                        0111111100    000  011111           112211


Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      .....+...+.+++++++|. ++++...++.|.+||..         +... ...+..+...+.++++ ++| .++++.+
T Consensus       218 ~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~---------g~~~-~~~~~~~~~~~~~i~~-~~g-~l~v~~~  284 (299)
T 2z2n_A          218 FKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSN---------NIIE-EYPIQIKSAEPHGICF-DGE-TIWFAME  284 (299)
T ss_dssp             EECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETT---------TEEE-EEECSSSSCCEEEEEE-CSS-CEEEEET
T ss_pred             EECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCC---------CceE-EEeCCCCCCccceEEe-cCC-CEEEEec
Confidence            11222446788999999985 77776678899999972         3221 2223445567899999 887 5666654


Q ss_pred             CCCcEEEEecCCCC
Q psy4577         318 DDHTICLWDINATP  331 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~  331 (384)
                       .+.|..++.++.+
T Consensus       285 -~~~l~~~~~~~~~  297 (299)
T 2z2n_A          285 -CDKIGKLTLIKDN  297 (299)
T ss_dssp             -TTEEEEEEEC---
T ss_pred             -CCcEEEEEcCccc
Confidence             5678888876653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.99  E-value=1.6e-07  Score=80.15  Aligned_cols=117  Identities=8%  Similarity=0.076  Sum_probs=73.3

Q ss_pred             CCCCCCceEEEeeC----CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEe------
Q psy4577           3 WSPHNETILASSGT----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS------   72 (384)
Q Consensus         3 fsp~~~~~lat~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s------   72 (384)
                      ..|++..++++-..    +++|.+.|..+              .+.+..+..-..+ . ++++|+|+.+.++..      
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t--------------~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~  103 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEA--------------GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIA  103 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTT--------------TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCC--------------CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccc
Confidence            46888765555443    68999999987              4566655543444 4 999999996655442      


Q ss_pred             ---cCCeEEEEEcccCCCccchhheeeeeeeEEEeccCC-cccccceeeeeeccCeeEEEEecCceeee------cceee
Q psy4577          73 ---EDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNT-PFLYDLVMTHALEWPSLTAQWLPDVTRVI------NEEYK  142 (384)
Q Consensus        73 ---~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------d~~v~  142 (384)
                         .+++|.+||..+.+..             ..+.... ...   .    .......+.|+|+|+.++      ++.|.
T Consensus       104 ~G~~~~~VsviD~~t~~v~-------------~~I~v~~g~r~---~----~g~~P~~~a~spDGk~lyVan~~~~~~Vs  163 (386)
T 3sjl_D          104 RGERTDYVEVFDPVTLLPT-------------ADIELPDAPRF---L----VGTYPWMTSLTPDGKTLLFYQFSPAPAVG  163 (386)
T ss_dssp             EEEEEEEEEEECTTTCCEE-------------EEEEETTCCCC---C----BSCCGGGEEECTTSSEEEEEECSSSCEEE
T ss_pred             cCCCCCEEEEEECCCCeEE-------------EEEECCCcccc---c----cCCCCceEEEcCCCCEEEEEEcCCCCeEE
Confidence               4688999999885321             1111100 000   0    011234689999998765      36788


Q ss_pred             eecccccccccee
Q psy4577         143 IWKKNTPFLYDLV  155 (384)
Q Consensus       143 ~w~~~~~~~~~~~  155 (384)
                      ++|..+.+....+
T Consensus       164 VID~~t~~vv~tI  176 (386)
T 3sjl_D          164 VVDLEGKAFKRML  176 (386)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEECCCCcEEEEE
Confidence            9998877665444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.97  E-value=3.7e-07  Score=78.71  Aligned_cols=73  Identities=12%  Similarity=0.147  Sum_probs=51.6

Q ss_pred             eEEEEEcCCCCcEEEEEe---------CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC-eEEEe
Q psy4577         247 VNRARYMPQNPCVIATKT---------PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG-YLLSA  316 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~-~l~s~  316 (384)
                      ...+.++|+++.++++..         .++.|.++|..        +.+  .+..+.. .....+++|+||| + +++++
T Consensus       269 ~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~--------t~~--vv~~i~~-g~~p~~i~~s~Dg-~~~l~v~  336 (373)
T 2mad_H          269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL--------VGQ--TSSQISL-GHDVDAISVAQDG-GPDLYAL  336 (373)
T ss_pred             eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECC--------CCE--EEEEEEC-CCCcCeEEECCCC-CeEEEEE
Confidence            445788999875565543         13579999985        232  3334432 2357899999999 6 67777


Q ss_pred             e-CCCcEEEEecCCCC
Q psy4577         317 S-DDHTICLWDINATP  331 (384)
Q Consensus       317 s-~Dg~i~iwd~~~~~  331 (384)
                      . .++.|.++|+.+++
T Consensus       337 ~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          337 SAGTEVLHIYDAGAGD  352 (373)
T ss_pred             cCCCCeEEEEECCCCC
Confidence            6 58999999999987

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.93  E-value=5.2e-07  Score=76.52  Aligned_cols=102  Identities=6%  Similarity=-0.097  Sum_probs=65.6

Q ss_pred             CceEEEEEcCCCCcEEEEEeCC----------CcEEEEecCCCCCCCCCCCCccceeeecCC-CCceEEEEeCCCCCCeE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPS----------SDVLVFDYTKHPSKPDPNGECHPDLRLRGH-QKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~s~~~~~~l  313 (384)
                      .....++++|+|+ +++++..+          +.|.++|..        ++...  ..+.-. ......++|+|++ +.|
T Consensus       172 ~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~--------t~~v~--~~~~~~~g~~p~~la~~~d~-~~l  239 (328)
T 3dsm_A          172 IQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAE--------TFTVE--KQFKFKLGDWPSEVQLNGTR-DTL  239 (328)
T ss_dssp             SCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETT--------TTEEE--EEEECCTTCCCEEEEECTTS-CEE
T ss_pred             CCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECC--------CCeEE--EEEecCCCCCceeEEEecCC-CEE
Confidence            3457889999995 77776654          789999975        33322  223211 2367899999998 566


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         314 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      ..+..  .|.+||..+++..     ....+..+......++++|++..+...
T Consensus       240 yv~~~--~v~~~d~~t~~~~-----~~~~~~~~~~~p~gi~vdp~~g~lyva  284 (328)
T 3dsm_A          240 YWINN--DIWRMPVEADRVP-----VRPFLEFRDTKYYGLTVNPNNGEVYVA  284 (328)
T ss_dssp             EEESS--SEEEEETTCSSCC-----SSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred             EEEcc--EEEEEECCCCcee-----eeeeecCCCCceEEEEEcCCCCeEEEE
Confidence            66544  8999999887621     001112124568889999966554433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.93  E-value=1.3e-07  Score=89.66  Aligned_cols=96  Identities=19%  Similarity=0.136  Sum_probs=57.0

Q ss_pred             CceEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         245 GEVNRARYMPQNPCVIATKTPS-----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      ..+.++.|+|+|+ +|+..+.+     ..|++||+.        .+.......+..+...+.... +|+| ..|+..+.+
T Consensus       268 ~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~--------~~~~~~~~~l~~~~~~~~~~~-~~dg-~~l~~~s~~  336 (741)
T 1yr2_A          268 KRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVT--------NGKIGPVTALIPDLKAQWDFV-DGVG-DQLWFVSGD  336 (741)
T ss_dssp             TCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEE--------TTEECCCEEEECSSSSCEEEE-EEET-TEEEEEECT
T ss_pred             eEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECC--------CCCCcccEEecCCCCceEEEE-eccC-CEEEEEECC
Confidence            3478899999997 55554533     379999985        221111334555555555554 4888 566666653


Q ss_pred             ----CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEe
Q psy4577         320 ----HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIE  356 (384)
Q Consensus       320 ----g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s  356 (384)
                          +.|.+||+.++.  ..   ....+..+...+.++.|.
T Consensus       337 ~~~~~~l~~~d~~~~~--~~---~~~l~~~~~~~l~~~~~~  372 (741)
T 1yr2_A          337 GAPLKKIVRVDLSGST--PR---FDTVVPESKDNLESVGIA  372 (741)
T ss_dssp             TCTTCEEEEEECSSSS--CE---EEEEECCCSSEEEEEEEE
T ss_pred             CCCCCEEEEEeCCCCc--cc---cEEEecCCCCeEEEEEEE
Confidence                459999987741  00   222333444556666666

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.91  E-value=1.4e-07  Score=80.60  Aligned_cols=110  Identities=8%  Similarity=-0.055  Sum_probs=65.8

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCC-cEEEEecCCCCCCCCCCCCcc--ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSS-DVLVFDYTKHPSKPDPNGECH--PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~--~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      .++.++|+|+++ .|..+..++ .|..++........  .....  ......++......++++++| +++++...++.|
T Consensus       196 ~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V  271 (343)
T 2qe8_A          196 GVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQ--LTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAI  271 (343)
T ss_dssp             CEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTT--CCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEE
T ss_pred             ccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCC--CChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeE
Confidence            468899999996 555555444 55555432100000  00000  001222444456789999998 799999999999


Q ss_pred             EEEecCCCCCCCccccceeeeec-cCCcEeEEEEecCCCcccccc
Q psy4577         323 CLWDINATPKENRVIDAKTIFTG-HTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      .+||..+++       ....... +....++++|.|++....+.+
T Consensus       272 ~~~d~~~G~-------~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          272 GVITSADRA-------YKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             EEEETTTTE-------EEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             EEEECCCCC-------EEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            999985443       2222221 245688999999887554444

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.86  E-value=4.9e-08  Score=83.68  Aligned_cols=61  Identities=11%  Similarity=0.147  Sum_probs=44.3

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee------c---CCCCceEEEEeCCCCCCeEEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL------R---GHQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~------~---~h~~~i~~~~~s~~~~~~l~s  315 (384)
                      ..|++++|+|+|   ++.|..||+|++|+..        ........++      .   +|...|.+|.|.+++ .+|++
T Consensus       163 ~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~--------~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~  230 (388)
T 1xip_A          163 QNVTSFDVTNSQ---LAVLLKDRSFQSFAWR--------NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV  230 (388)
T ss_dssp             ESEEEEEECSSE---EEEEETTSCEEEEEEE--------TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred             CCceEEEEcCCc---eEEEEcCCcEEEEcCC--------CccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence            368999999998   4668889999999875        2221112233      2   477899999999997 68877


Q ss_pred             ee
Q psy4577         316 AS  317 (384)
Q Consensus       316 ~s  317 (384)
                      -+
T Consensus       231 y~  232 (388)
T 1xip_A          231 FG  232 (388)
T ss_dssp             EE
T ss_pred             Ec
Confidence            43

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.82  E-value=1.6e-06  Score=74.74  Aligned_cols=68  Identities=10%  Similarity=0.189  Sum_probs=48.3

Q ss_pred             CCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec--------ccccceEEEEEccCCCcEEEEEecC--
Q psy4577           5 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG--------GHTAKISDFSWNPNEPWVICSVSED--   74 (384)
Q Consensus         5 p~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--------gh~~~V~~l~~~~~~~~~l~s~s~D--   74 (384)
                      ++++.+++++..+++|.|+|+.+.          +..+++..+..        | ...-..+...|+|  +++++..+  
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~----------p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pdG--i~Vs~~g~~~  159 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPN----------PREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPDA--IYISALGNEE  159 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSC----------TTSCEEEEEECHHHHHHHHC-EEEEEEEEECSSC--EEEEEEEETT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCC----------CCCceeeeeechhhcccccC-CCcccceeECCCe--EEEEcCCCcC
Confidence            788878888888999999999642          13356666663        1 1134456778998  55576666  


Q ss_pred             ----CeEEEEEcccC
Q psy4577          75 ----NIMQILSVVCV   85 (384)
Q Consensus        75 ----~~i~vwd~~~~   85 (384)
                          +.|.+.|..+.
T Consensus       160 g~~~g~v~vlD~~T~  174 (462)
T 2ece_A          160 GEGPGGILMLDHYSF  174 (462)
T ss_dssp             SCSCCEEEEECTTTC
T ss_pred             CCCCCeEEEEECCCC
Confidence                78999998875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.79  E-value=1.8e-07  Score=87.95  Aligned_cols=106  Identities=10%  Similarity=0.044  Sum_probs=65.9

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeC---CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTP---SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      |...+.++.|+|+|+.++++.+.   +..|+++|+.        .+. .....+..+....... |+++|..+++....|
T Consensus       232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~--------~~~-~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~  301 (693)
T 3iuj_A          232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLS--------QEN-APLLTVQGDLDADVSL-VDNKGSTLYLLTNRD  301 (693)
T ss_dssp             GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETT--------STT-CCCEEEECSSSSCEEE-EEEETTEEEEEECTT
T ss_pred             CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECC--------CCC-CceEEEeCCCCceEEE-EeccCCEEEEEECCC
Confidence            34446789999999855555543   3589999985        221 1233555566655555 666664555555544


Q ss_pred             ---CcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         320 ---HTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       320 ---g~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                         +.|..+|+.++...     ....+..|...+.  .|+|++..+...
T Consensus       302 ~~~~~l~~~d~~~~~~~-----~~~~l~~~~~~~~--~~s~~g~~lv~~  343 (693)
T 3iuj_A          302 APNRRLVTVDAANPGPA-----HWRDLIPERQQVL--TVHSGSGYLFAE  343 (693)
T ss_dssp             CTTCEEEEEETTSCCGG-----GCEEEECCCSSCE--EEEEETTEEEEE
T ss_pred             CCCCEEEEEeCCCCCcc-----ccEEEecCCCCEE--EEEEECCEEEEE
Confidence               68999999876511     1345555665554  888988765433

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.79  E-value=4.3e-07  Score=74.84  Aligned_cols=100  Identities=12%  Similarity=0.035  Sum_probs=67.2

Q ss_pred             ceEEEEEcCCCCcEEEEEeC-CCcEEEEecCCCCCCCCCCCCccceeeec----CCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         246 EVNRARYMPQNPCVIATKTP-SSDVLVFDYTKHPSKPDPNGECHPDLRLR----GHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      .+.++.+.|+|. ++++.+. ++.|..+|.         ++.......+.    ++......+++.++| .+|++...++
T Consensus        78 ~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~---------~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~  146 (276)
T 3no2_A           78 EMQTARILPDGN-ALVAWCGHPSTILEVNM---------KGEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATS  146 (276)
T ss_dssp             EEEEEEECTTSC-EEEEEESTTEEEEEECT---------TSCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTT
T ss_pred             cccccEECCCCC-EEEEecCCCCEEEEEeC---------CCCEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCC
Confidence            467788899995 7777666 666766664         33322111211    222345567889999 7999999999


Q ss_pred             cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccc
Q psy4577         321 TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      .|..||.+ ++       .+.++... ....++...+++..+.+.
T Consensus       147 ~v~~~d~~-G~-------~~w~~~~~-~~~~~~~~~~~g~~~v~~  182 (276)
T 3no2_A          147 EVREIAPN-GQ-------LLNSVKLS-GTPFSSAFLDNGDCLVAC  182 (276)
T ss_dssp             EEEEECTT-SC-------EEEEEECS-SCCCEEEECTTSCEEEEC
T ss_pred             EEEEECCC-CC-------EEEEEECC-CCccceeEcCCCCEEEEe
Confidence            99999998 77       77776643 345566777777765544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.77  E-value=2.9e-06  Score=73.81  Aligned_cols=76  Identities=16%  Similarity=0.140  Sum_probs=54.0

Q ss_pred             EEEEcCCCCcEEEEEeC---------CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC-eEEEee-
Q psy4577         249 RARYMPQNPCVIATKTP---------SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG-YLLSAS-  317 (384)
Q Consensus       249 ~v~~~p~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~-~l~s~s-  317 (384)
                      .++++|++++++++...         ++.|.++|..        +..  .+..+... ....+++|+||| + ++++.. 
T Consensus       323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~--------T~k--vv~~I~vg-~~P~gia~spDg-~~~lyv~n~  390 (426)
T 3c75_H          323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE--------TGE--RINKIELG-HEIDSINVSQDA-EPLLYALSA  390 (426)
T ss_dssp             CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT--------TCC--EEEEEEEE-EEECEEEECCSS-SCEEEEEET
T ss_pred             eeEEcCCCCEEEEEecccccccccCCCCEEEEEECC--------CCe--EEEEEECC-CCcCeEEEccCC-CEEEEEEcC
Confidence            36889998766665431         3579999986        332  23333321 247899999998 5 677766 


Q ss_pred             CCCcEEEEecCCCCCCCccccceeee
Q psy4577         318 DDHTICLWDINATPKENRVIDAKTIF  343 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~  343 (384)
                      .++.|.++|..+.+       .+.++
T Consensus       391 ~s~~VsVID~~t~k-------vv~tI  409 (426)
T 3c75_H          391 GTQTLHIYDAATGE-------ELRSV  409 (426)
T ss_dssp             TTTEEEEEETTTCC-------EEEEE
T ss_pred             CCCeEEEEECCCCC-------EEEEe
Confidence            59999999999998       77775

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.76  E-value=6.5e-06  Score=68.52  Aligned_cols=72  Identities=8%  Similarity=0.074  Sum_probs=49.4

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      +...+.++++++++. ++++...++.|..||..         +... ...+......+.+++++++| .++++.. . .|
T Consensus       228 ~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~---------g~~~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~-~-~i  293 (300)
T 2qc5_A          228 PNARPHAITAGKNSE-IWFTEWGANQIGRITND---------NTIQ-EYQLQTENAEPHGITFGKDG-SVWFALK-C-KI  293 (300)
T ss_dssp             TTCCEEEEEECSTTC-EEEEETTTTEEEEECTT---------SCEE-EEECCSTTCCCCCEEECTTS-CEEEECS-S-EE
T ss_pred             CCCCceEEEECCCCC-EEEeccCCCeEEEECCC---------CcEE-EEECCccCCccceeEeCCCC-CEEEEcc-C-ce
Confidence            345688999999985 77776667899999872         3222 12233344568899999998 5666655 4 77


Q ss_pred             EEEecC
Q psy4577         323 CLWDIN  328 (384)
Q Consensus       323 ~iwd~~  328 (384)
                      ..+|.+
T Consensus       294 ~~~~p~  299 (300)
T 2qc5_A          294 GKLNLN  299 (300)
T ss_dssp             EEEEEC
T ss_pred             EEeCCC
Confidence            777654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.76  E-value=3.4e-06  Score=70.84  Aligned_cols=74  Identities=15%  Similarity=0.315  Sum_probs=55.1

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC-eEEEeeCCCcEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG-YLLSASDDHTIC  323 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~-~l~s~s~Dg~i~  323 (384)
                      ..+..++++++|. ++++...++.|.+||..        ++..  +..+..+...+.+++|+|++ + ++++...++.|.
T Consensus       226 ~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~--------~g~~--~~~~~~~~~~~~~i~~~~dg-~~l~v~~~~~~~l~  293 (314)
T 1pjx_A          226 GGADGMDFDEDNN-LLVANWGSSHIEVFGPD--------GGQP--KMRIRCPFEKPSNLHFKPQT-KTIFVTEHENNAVW  293 (314)
T ss_dssp             CEEEEEEEBTTCC-EEEEEETTTEEEEECTT--------CBSC--SEEEECSSSCEEEEEECTTS-SEEEEEETTTTEEE
T ss_pred             CCCCceEECCCCC-EEEEEcCCCEEEEEcCC--------CCcE--eEEEeCCCCCceeEEECCCC-CEEEEEeCCCCeEE
Confidence            3467799999994 88877778899999974        2332  23445565789999999998 6 556666778999


Q ss_pred             EEecCCC
Q psy4577         324 LWDINAT  330 (384)
Q Consensus       324 iwd~~~~  330 (384)
                      .|++...
T Consensus       294 ~~~~~~~  300 (314)
T 1pjx_A          294 KFEWQRN  300 (314)
T ss_dssp             EEECSSC
T ss_pred             EEeCCCC
Confidence            9998753

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.72  E-value=1.7e-05  Score=68.39  Aligned_cols=101  Identities=8%  Similarity=-0.037  Sum_probs=59.9

Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC----------CCCceEEEEeCCCCCCeEEEee--
Q psy4577         250 ARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG----------HQKEGYGLSWNPSLNGYLLSAS--  317 (384)
Q Consensus       250 v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----------h~~~i~~~~~s~~~~~~l~s~s--  317 (384)
                      ..+.+++..+++. +..+.+.+.|+..        .....+..+.-          .......++++|++.+++++..  
T Consensus       218 ~~~~~~~~~~~~~-~~~~~v~vid~~~--------~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~  288 (373)
T 2mad_H          218 PAQANKSGRIVWP-VYSGKILQADISA--------AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ  288 (373)
T ss_pred             ceeEecCCEEEEE-cCCceEEEEeccC--------CcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC
Confidence            4556665444444 3678899999852        11111111110          1122445789999844444332  


Q ss_pred             -------CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         318 -------DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       318 -------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                             .++.|.+.|..+.+       .+.++.. ......++|+|||+...-++.
T Consensus       289 ~~~~~~~~~~~V~VID~~t~~-------vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          289 SAWKLHAAAKEVTSVTGLVGQ-------TSSQISL-GHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             CcccccCCCCeEEEEECCCCE-------EEEEEEC-CCCcCeEEECCCCCeEEEEEc
Confidence                   23589999999987       7777752 335889999999994333333

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.70  E-value=3.1e-08  Score=85.51  Aligned_cols=59  Identities=15%  Similarity=0.118  Sum_probs=37.7

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV   85 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~   85 (384)
                      +|++++.|+.|+.||..+              .+.+..+..  +.+.+..+..++. ++++++.|+.|+.||..++
T Consensus        11 ~v~~gs~dg~v~a~d~~t--------------G~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG   69 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKRT--------------GSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNN   69 (369)
T ss_dssp             EEEEEETTSEEEEEETTT--------------CCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----
T ss_pred             EEEEEcCCCEEEEEECCC--------------CCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCC
Confidence            689999999999999886              244444444  4566666667776 6667789999999999776

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.66  E-value=1.2e-05  Score=68.77  Aligned_cols=89  Identities=4%  Similarity=0.020  Sum_probs=59.7

Q ss_pred             EEEcCCCCcEEEEEe-C-------CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee-CCC
Q psy4577         250 ARYMPQNPCVIATKT-P-------SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS-DDH  320 (384)
Q Consensus       250 v~~~p~~~~~l~s~s-~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s-~Dg  320 (384)
                      ++++|++++++++.. .       ++.+.++|+.        +.+  .+..+.... ....++|+|||..++++.. .++
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~--------t~~--vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~  337 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS--------VGQ--TSGPISNGH-DSDAIIAAQDGASDNYANSAGTE  337 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS--------SCC--EEECCEEEE-EECEEEECCSSSCEEEEEETTTT
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECC--------CCe--EEEEEECCC-CcceEEECCCCCEEEEEccCCCC
Confidence            689999976666544 2       2356699986        332  233333222 5789999999844677777 699


Q ss_pred             cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEec
Q psy4577         321 TICLWDINATPKENRVIDAKTIFTGHTAVVELELIER  357 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp  357 (384)
                      +|.++|+.+.+       .+.++..... -..+++++
T Consensus       338 ~VsVID~~t~k-------vv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          338 VLDIYDAASDQ-------DQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             EEEEEESSSCE-------EEEECCCCSC-CCEEECCC
T ss_pred             eEEEEECCCCc-------EEEEEECCCC-CCEEEeec
Confidence            99999999998       7777764433 33455543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.63  E-value=1.7e-05  Score=69.38  Aligned_cols=69  Identities=12%  Similarity=0.144  Sum_probs=52.4

Q ss_pred             ceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCCCccceeeecCC---------------CCceEEEEeCCCC
Q psy4577         246 EVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH---------------QKEGYGLSWNPSL  309 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h---------------~~~i~~~~~s~~~  309 (384)
                      ....++++|+|. ++++-+ .++.|+.|++.        .+.   +..+.++               -.....++++++|
T Consensus       324 ~P~gia~d~dG~-lyvad~~~~~~I~~~~~~--------~G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g  391 (409)
T 3hrp_A          324 QPNGMTVDEDGN-FYIVDGFKGYCLRKLDIL--------DGY---VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG  391 (409)
T ss_dssp             SEEEEEECTTCC-EEEEETTTTCEEEEEETT--------TTE---EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred             CCeEEEEeCCCC-EEEEeCCCCCEEEEEECC--------CCE---EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC
Confidence            467899999995 888877 89999999964        332   2233333               2357899999998


Q ss_pred             CCeEEEeeCCCcEEEEec
Q psy4577         310 NGYLLSASDDHTICLWDI  327 (384)
Q Consensus       310 ~~~l~s~s~Dg~i~iwd~  327 (384)
                       .++++-..+++|+.+++
T Consensus       392 -~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          392 -GYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -EEEEEESTTCEEEEEEE
T ss_pred             -CEEEEECCCCeEEEEEe
Confidence             78888888899988765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.48  E-value=5.7e-05  Score=62.88  Aligned_cols=102  Identities=10%  Similarity=0.085  Sum_probs=57.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeC---------CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         246 EVNRARYMPQNPCVIATKTP---------SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      .++.++++|+|. ++++...         .....||.+..       .+..   ..+..+....+.++|+|++..++++.
T Consensus        99 ~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~-------~g~~---~~~~~~~~~pngi~~spdg~~lyv~~  167 (297)
T 3g4e_A           99 RFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFP-------DHHV---KKYFDQVDISNGLDWSLDHKIFYYID  167 (297)
T ss_dssp             EEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECT-------TSCE---EEEEEEESBEEEEEECTTSCEEEEEE
T ss_pred             CCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEEC-------CCCE---EEEeeccccccceEEcCCCCEEEEec
Confidence            367889999996 6665422         13345666531       2221   12223334568999999984355666


Q ss_pred             eCCCcEEEEecC--CCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577         317 SDDHTICLWDIN--ATPKENRVIDAKTIFTGHTAVVELELIERLTK  360 (384)
Q Consensus       317 s~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  360 (384)
                      +.++.|.+||+.  ++...  ....+..+..+......+++.++|.
T Consensus       168 ~~~~~i~~~~~d~~~G~~~--~~~~~~~~~~~~~~p~g~~~d~~G~  211 (297)
T 3g4e_A          168 SLSYSVDAFDYDLQTGQIS--NRRSVYKLEKEEQIPDGMCIDAEGK  211 (297)
T ss_dssp             GGGTEEEEEEECTTTCCEE--EEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred             CCCCcEEEEeccCCCCccc--CcEEEEECCCCCCCCCeeEECCCCC
Confidence            778999999984  33200  0012222333334566677777664

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.46  E-value=0.00015  Score=59.27  Aligned_cols=95  Identities=7%  Similarity=-0.011  Sum_probs=62.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      ..+.++++|++..++++-...+.|.++|..         +.. ....+.+. .....++.. .+ .++++....+.|..+
T Consensus       168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~---------g~~-~~~~~~~~-~~P~gi~~d-~~-~lyva~~~~~~v~~~  234 (267)
T 1npe_A          168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPA---------QPG-RRKVLEGL-QYPFAVTSY-GK-NLYYTDWKTNSVIAM  234 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETT---------EEE-EEEEEECC-CSEEEEEEE-TT-EEEEEETTTTEEEEE
T ss_pred             CCcEEEEcCCCCEEEEEECCCCEEEEEecC---------CCc-eEEEecCC-CCceEEEEe-CC-EEEEEECCCCeEEEE
Confidence            467899999876677887778899999984         221 11122222 233566654 33 466666667899999


Q ss_pred             ecCCCCCCCccccceeeeeccC-CcEeEEEEecCCC
Q psy4577         326 DINATPKENRVIDAKTIFTGHT-AVVELELIERLTK  360 (384)
Q Consensus       326 d~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~sp~~~  360 (384)
                      |..+++       .+.++.... .....+++.|++-
T Consensus       235 d~~~g~-------~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          235 DLAISK-------EMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             ETTTTE-------EEEEECCSSCCCCCCEEEECSCC
T ss_pred             eCCCCC-------ceEEEccccccccceeeecCccC
Confidence            999887       666664322 2367788888763

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.44  E-value=6.3e-06  Score=70.30  Aligned_cols=74  Identities=4%  Similarity=-0.069  Sum_probs=51.3

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      +.+....++++++| +++++...++.|.+||..        .+....+... .+-....+++|.+++ .++++.+..+.+
T Consensus       246 ~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~--------~G~~~~~~~~-~~~~~p~~va~~~~g-~l~v~~~~~~~~  314 (343)
T 2qe8_A          246 EKPICDGISIDKDH-NIYVGDLAHSAIGVITSA--------DRAYKLLVTD-EKLSWTDSFNFGSDG-YLYFDCNQLHHS  314 (343)
T ss_dssp             ECCSCSCEEECTTC-CEEEEEGGGTEEEEEETT--------TTEEEEEEEC-GGGSCEEEEEECTTS-CEEEEECCGGGS
T ss_pred             cCCCCceEEECCCC-CEEEEccCCCeEEEEECC--------CCCEEEEEEC-CceecCCeeEECCCC-cEEEEeCccccc
Confidence            34456789999998 588888889999999973        2332222111 124568999999998 688887766666


Q ss_pred             EEEec
Q psy4577         323 CLWDI  327 (384)
Q Consensus       323 ~iwd~  327 (384)
                      .+|+-
T Consensus       315 ~~f~~  319 (343)
T 2qe8_A          315 APLNA  319 (343)
T ss_dssp             GGGBT
T ss_pred             ccccc
Confidence            55543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.43  E-value=7.4e-05  Score=63.13  Aligned_cols=101  Identities=9%  Similarity=0.100  Sum_probs=55.3

Q ss_pred             ceEEEEEcCCCCcEEEEEeCC----CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         246 EVNRARYMPQNPCVIATKTPS----SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      .++.++++|+|. ++++...+    +...||.+.        .+..   ..+..+......++|+|++..++++.+.++.
T Consensus       135 ~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--------~g~~---~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          135 RSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--------KGKV---TKLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             EEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--------TTEE---EEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             CCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--------CCcE---EEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            477899999995 66554321    234455442        1211   1222233456799999998324455566789


Q ss_pred             EEEEecC--CC-CCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577         322 ICLWDIN--AT-PKENRVIDAKTIFTGHTAVVELELIERLTK  360 (384)
Q Consensus       322 i~iwd~~--~~-~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  360 (384)
                      |.+||+.  ++ +...  ...+..+.........+++.++|.
T Consensus       203 I~~~d~~~~~Gl~~~~--~~~~~~~~~~~~~p~gi~~d~~G~  242 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGK--AEVFIDSTGIKGGMDGSVCDAEGH  242 (326)
T ss_dssp             EEEEEBCTTTCCBSSC--CEEEEECTTSSSEEEEEEECTTSC
T ss_pred             EEEEEcccccCCcccC--ceEEEECCCCCCCCCeeEECCCCC
Confidence            9999986  44 2100  001222222334456677766665

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.37  E-value=1.6e-05  Score=71.19  Aligned_cols=124  Identities=13%  Similarity=0.074  Sum_probs=77.7

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC--CCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP--DPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      ....++.++|||+.+++++-.+.+|.++|+.......  ...........+. -...-..++|+|+| ...++.-.|++|
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV  354 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQV  354 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEE
T ss_pred             CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcE
Confidence            4567899999999888888889999999996210000  0000001111222 12357889999999 788888899999


Q ss_pred             EEEecCCCCC---CCccccceeeeeccCCc-----EeEEEEecCCCcccccccccc
Q psy4577         323 CLWDINATPK---ENRVIDAKTIFTGHTAV-----VELELIERLTKKADPVCTLEK  370 (384)
Q Consensus       323 ~iwd~~~~~~---~~~~~~~~~~~~~h~~~-----v~~~~~sp~~~~~~~~c~~~~  370 (384)
                      .+||+.....   ..+....+.++..|-.+     -..+..+|||+.+.+.|-..+
T Consensus       355 ~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk  410 (595)
T 1fwx_A          355 VKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK  410 (595)
T ss_dssp             EEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred             EEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence            9999987210   00011155566544332     123456899999888876553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.30  E-value=2.8e-05  Score=66.49  Aligned_cols=73  Identities=8%  Similarity=-0.114  Sum_probs=48.3

Q ss_pred             CCCCCCCCceEEEee---------CCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccc-------ccceEEEEEccCC
Q psy4577           1 VQWSPHNETILASSG---------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-------TAKISDFSWNPNE   64 (384)
Q Consensus         1 v~fsp~~~~~lat~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh-------~~~V~~l~~~~~~   64 (384)
                      +++|||++.++++..         .++.|.+||..+.              +.+..+.-.       ...-..++|+|||
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--------------~v~~~I~v~~g~r~~~g~~P~~~a~spDG  148 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--------------LPTADIELPDAPRFLVGTYPWMTSLTPDG  148 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--------------CEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--------------eEEEEEECCCccccccCCCCceEEEcCCC
Confidence            468999985444432         3678999999872              333333210       1134568999999


Q ss_pred             CcEEEEEe-cCCeEEEEEcccCCC
Q psy4577          65 PWVICSVS-EDNIMQILSVVCVEP   87 (384)
Q Consensus        65 ~~~l~s~s-~D~~i~vwd~~~~~~   87 (384)
                      ++++++.. .+++|.++|+.+.+.
T Consensus       149 k~lyVan~~~~~~VsVID~~t~~v  172 (386)
T 3sjl_D          149 KTLLFYQFSPAPAVGVVDLEGKAF  172 (386)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEE
T ss_pred             CEEEEEEcCCCCeEEEEECCCCcE
Confidence            96554443 378999999988743

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.13  E-value=0.00054  Score=55.34  Aligned_cols=74  Identities=11%  Similarity=0.099  Sum_probs=52.9

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC-----------CCceEEEEeCCCCCCeEEE
Q psy4577         247 VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH-----------QKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-----------~~~i~~~~~s~~~~~~l~s  315 (384)
                      .+.+.|. ++ .+++....++.|.+.|..        ++.......+.+-           ....+.|+|+|++.++++|
T Consensus       154 ~nele~~-dg-~lyvn~~~~~~V~vID~~--------tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT  223 (266)
T 2iwa_A          154 LNELEYI-NG-EVWANIWQTDCIARISAK--------DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT  223 (266)
T ss_dssp             EEEEEEE-TT-EEEEEETTSSEEEEEETT--------TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred             ceeEEEE-CC-EEEEecCCCCeEEEEECC--------CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence            5677777 56 477776678899999986        4544333333321           1245899999998678888


Q ss_pred             eeCCCcEEEEecCCC
Q psy4577         316 ASDDHTICLWDINAT  330 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~  330 (384)
                      +...+.+.+-++...
T Consensus       224 gk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          224 GKLWPKLFEIKLHLV  238 (266)
T ss_dssp             ETTCSEEEEEEEEEC
T ss_pred             CCCCCeEEEEEEecc
Confidence            888999999988764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.05  E-value=0.0027  Score=52.90  Aligned_cols=100  Identities=5%  Similarity=-0.149  Sum_probs=63.6

Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEec
Q psy4577         248 NRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI  327 (384)
Q Consensus       248 ~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~  327 (384)
                      +.+  +|+++.++++-+..+.|..|++...       +.......+.. ......++++++| +++++....+.|.++|.
T Consensus       172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~-------g~~~~~~~~~~-~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          172 NGL--KRFGNFLYVSNTEKMLLLRIPVDST-------DKPGEPEIFVE-QTNIDDFAFDVEG-NLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             EEE--EEETTEEEEEETTTTEEEEEEBCTT-------SCBCCCEEEEE-SCCCSSEEEBTTC-CEEEECBTTCCEEEECT
T ss_pred             CCc--CcCCCEEEEEeCCCCEEEEEEeCCC-------CCCCccEEEec-cCCCCCeEECCCC-CEEEEeCCCCeEEEECC
Confidence            445  7777667777778899999998521       11111111111 1245678999998 78888777899999997


Q ss_pred             CCCCCCCccccc--eeeeeccCCcEeEEEEe---cCCCcccccc
Q psy4577         328 NATPKENRVIDA--KTIFTGHTAVVELELIE---RLTKKADPVC  366 (384)
Q Consensus       328 ~~~~~~~~~~~~--~~~~~~h~~~v~~~~~s---p~~~~~~~~c  366 (384)
                      . ++       .  +..+.......++++|.   |++..+..+.
T Consensus       241 ~-G~-------~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          241 D-RS-------TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             T-CC-------EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             C-CC-------EEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence            5 43       3  22222223558899998   8877655443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.02  E-value=0.0003  Score=58.75  Aligned_cols=98  Identities=10%  Similarity=0.042  Sum_probs=62.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcccee-eecCC-CCceEEEEeCCCCCCeEEE----eeC-
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDL-RLRGH-QKEGYGLSWNPSLNGYLLS----ASD-  318 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~h-~~~i~~~~~s~~~~~~l~s----~s~-  318 (384)
                      .+.+++++++|. ++++...++.|.+|+.         .+....+. ...+. ...+..++++|+| ++++|    |.. 
T Consensus        87 ~~~gl~~d~dG~-l~v~~~~~~~v~~~~~---------~g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~  155 (305)
T 3dr2_A           87 FTNGNAVDAQQR-LVHCEHGRRAITRSDA---------DGQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRK  155 (305)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEECT---------TSCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSC
T ss_pred             ccceeeECCCCC-EEEEECCCCEEEEECC---------CCCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccc
Confidence            467888999995 7776666678999986         23222221 11111 1346789999999 68876    432 


Q ss_pred             ------------CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         319 ------------DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       319 ------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                                  .+.|+.+|..+++       .....  .....+.++|+|+++.+.
T Consensus       156 ~~~~~~~~~~~~~~~v~~~d~~~g~-------~~~~~--~~~~p~gl~~spdg~~ly  203 (305)
T 3dr2_A          156 PSQGCPADPELAHHSVYRLPPDGSP-------LQRMA--DLDHPNGLAFSPDEQTLY  203 (305)
T ss_dssp             GGGSCCCCCSSSCEEEEEECSSSCC-------CEEEE--EESSEEEEEECTTSSEEE
T ss_pred             cccccccccccCCCeEEEEcCCCCc-------EEEEe--cCCCCcceEEcCCCCEEE
Confidence                        2567778776664       32222  334578899999998554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.01  E-value=0.0017  Score=56.28  Aligned_cols=64  Identities=6%  Similarity=-0.103  Sum_probs=42.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC-----------C---CceEEEEeCCCCCC
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH-----------Q---KEGYGLSWNPSLNG  311 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h-----------~---~~i~~~~~s~~~~~  311 (384)
                      ....|.++|+++.++++.-..+.|.+||+..       .+..+.+..+.-.           .   +.-..++++||| +
T Consensus       322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d-------~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG-k  393 (462)
T 2ece_A          322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISN-------PFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG-R  393 (462)
T ss_dssp             CCCCEEECTTSCEEEEEETTTTEEEEEECSS-------TTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS-S
T ss_pred             ceeEEEECCCCCEEEEEeCCCCEEEEEEecC-------CCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC-C
Confidence            4678999999987777777789999999852       1222222222211           0   124789999999 6


Q ss_pred             eEEEee
Q psy4577         312 YLLSAS  317 (384)
Q Consensus       312 ~l~s~s  317 (384)
                      +|+.+.
T Consensus       394 ~LyVaN  399 (462)
T 2ece_A          394 RVYVTN  399 (462)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            666665

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.84  E-value=0.0096  Score=49.92  Aligned_cols=73  Identities=12%  Similarity=0.105  Sum_probs=46.7

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC-------
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD-------  318 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~-------  318 (384)
                      ..+.++++|++..++++-+.++.|++|++....     .+....+..+   .+ ...+++.++| ++.++...       
T Consensus       186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~-----~~~~~~~~~~---~g-P~gi~~d~~G-~l~va~~~~~~~~~~  255 (322)
T 2fp8_A          186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK-----KGTAEVLVKI---PN-PGNIKRNADG-HFWVSSSEELDGNMH  255 (322)
T ss_dssp             CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT-----TTCEEEEEEC---SS-EEEEEECTTS-CEEEEEEEETTSSTT
T ss_pred             cCcceEECCCCCEEEEEeCCCCeEEEEECCCCc-----CCccceEEeC---CC-CCCeEECCCC-CEEEEecCccccccc
Confidence            356799999986466665667899999985211     1111111122   22 6789999998 56666544       


Q ss_pred             ---CCcEEEEecC
Q psy4577         319 ---DHTICLWDIN  328 (384)
Q Consensus       319 ---Dg~i~iwd~~  328 (384)
                         .+.|..+|..
T Consensus       256 ~~~~~~v~~~d~~  268 (322)
T 2fp8_A          256 GRVDPKGIKFDEF  268 (322)
T ss_dssp             SCEEEEEEEECTT
T ss_pred             CCCccEEEEECCC
Confidence               4678888764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.80  E-value=0.0027  Score=51.24  Aligned_cols=97  Identities=6%  Similarity=-0.121  Sum_probs=63.1

Q ss_pred             EcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC---CceEEEEeCCCCCCeEEEeeCCCcEEEEecC
Q psy4577         252 YMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ---KEGYGLSWNPSLNGYLLSASDDHTICLWDIN  328 (384)
Q Consensus       252 ~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~  328 (384)
                      ++++++.++++- .++.|.++|..        +...........+.   ...+.+.|. +| .++++...++.|.+-|..
T Consensus       112 lt~Dg~~l~vs~-gs~~l~viD~~--------t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~  180 (266)
T 2iwa_A          112 LATDGKILYGSD-GTSILYEIDPH--------TFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAK  180 (266)
T ss_dssp             EEECSSSEEEEC-SSSEEEEECTT--------TCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETT
T ss_pred             EEECCCEEEEEC-CCCeEEEEECC--------CCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECC
Confidence            456776566654 68899999975        22222211222111   236788888 66 577777678999999999


Q ss_pred             CCCCCCccccceeeeecc-------------CCcEeEEEEecCCCcccccc
Q psy4577         329 ATPKENRVIDAKTIFTGH-------------TAVVELELIERLTKKADPVC  366 (384)
Q Consensus       329 ~~~~~~~~~~~~~~~~~h-------------~~~v~~~~~sp~~~~~~~~c  366 (384)
                      +++       .+..+.-.             ....+.++|+|+++.+...+
T Consensus       181 tg~-------V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          181 DGT-------LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             TCC-------EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             CCc-------EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            998       66666421             13568999999998655443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.80  E-value=0.0024  Score=51.02  Aligned_cols=67  Identities=6%  Similarity=-0.018  Sum_probs=41.2

Q ss_pred             CCCCCCCceEEEeeCCC--eEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           2 QWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      .|+ ++ .++.+.+.+|  +|+++|+.+.              +++....-. .........+++..+.+..-.++.+.+
T Consensus        49 ~~~-~~-~LyestG~~g~S~v~~vD~~Tg--------------kv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v  111 (262)
T 3nol_A           49 FYR-NG-YFYESTGLNGRSSIRKVDIESG--------------KTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFV  111 (262)
T ss_dssp             EEE-TT-EEEEEEEETTEEEEEEECTTTC--------------CEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEE-CC-EEEEECCCCCCceEEEEECCCC--------------cEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEE
Confidence            455 44 4777777766  8999999872              344433321 233333233345546555567899999


Q ss_pred             EEcccC
Q psy4577          80 LSVVCV   85 (384)
Q Consensus        80 wd~~~~   85 (384)
                      +|..+.
T Consensus       112 ~D~~t~  117 (262)
T 3nol_A          112 WNIRNL  117 (262)
T ss_dssp             EETTTC
T ss_pred             EECccC
Confidence            999875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.79  E-value=0.0026  Score=50.83  Aligned_cols=95  Identities=11%  Similarity=0.039  Sum_probs=59.6

Q ss_pred             CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC---CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCC
Q psy4577         254 PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ---KEGYGLSWNPSLNGYLLSASDDHTICLWDINAT  330 (384)
Q Consensus       254 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~  330 (384)
                      ++++.++++ ..++.|.++|..        +.............   ..++.+.|. +| .+++..-.+..|.+-|.+++
T Consensus       134 ~dg~~L~~S-dGs~~i~~iDp~--------T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG  202 (262)
T 3nol_A          134 HNDQYLIMS-DGTPVLRFLDPE--------SLTPVRTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETG  202 (262)
T ss_dssp             ECSSCEEEC-CSSSEEEEECTT--------TCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTC
T ss_pred             cCCCEEEEE-CCCCeEEEEcCC--------CCeEEEEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCC
Confidence            566545555 446789999975        33222222222122   234567776 66 56666667889999999999


Q ss_pred             CCCCccccceeeeecc------------CCcEeEEEEecCCCcccccc
Q psy4577         331 PKENRVIDAKTIFTGH------------TAVVELELIERLTKKADPVC  366 (384)
Q Consensus       331 ~~~~~~~~~~~~~~~h------------~~~v~~~~~sp~~~~~~~~c  366 (384)
                      +       .+..+.-.            ....+.++|+|+++.+...|
T Consensus       203 ~-------V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          203 K-------VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             B-------EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             c-------EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            7       55554321            13568999999988766554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.76  E-value=0.0051  Score=49.23  Aligned_cols=61  Identities=11%  Similarity=0.104  Sum_probs=39.3

Q ss_pred             CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEE-ecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577           8 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV   85 (384)
Q Consensus         8 ~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~   85 (384)
                      ..++++.+.+|.|+++|+.+.              +.+.. +..   .....-..+++..+.+..-.++.+.++|..+.
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tg--------------kv~~~~l~~---~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl  126 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESA--------------QPVWMERLG---NIFAEGLASDGERLYQLTWTEGLLFTWSGMPP  126 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCS--------------SCSEEEECT---TCCEEEEEECSSCEEEEESSSCEEEEEETTTT
T ss_pred             CEEEEEcCCCCEEEEEECCCC--------------cEEeEECCC---CcceeEEEEeCCEEEEEEccCCEEEEEECCcC
Confidence            457888888999999999873              22222 222   23332223344446666667899999999875

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.60  E-value=0.011  Score=55.99  Aligned_cols=75  Identities=8%  Similarity=0.132  Sum_probs=41.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeC--CCcEEEEecCCCCCCCCCCCCccc--eeeecCCCCceEEEEeCCCCCCeEEEeeCC--
Q psy4577         246 EVNRARYMPQNPCVIATKTP--SSDVLVFDYTKHPSKPDPNGECHP--DLRLRGHQKEGYGLSWNPSLNGYLLSASDD--  319 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D--  319 (384)
                      ....+.|+|+|+.++++...  ...|+++|+.        .+....  .....+......++.|+..+ .+++....+  
T Consensus       272 ~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~--------~~~~~~~~~~l~~~~~~~~~s~~~~~g~-~l~~~t~~~~a  342 (751)
T 2xe4_A          272 FSAFMYKAADTNTLCIGSQSPETAEVHLLDLR--------KGNAHNTLEIVRPREKGVRYDVQMHGTS-HLVILTNEGGA  342 (751)
T ss_dssp             CEEEEEECTTSSEEEEEEECSSCEEEEEEESS--------SCTTCCCEEESSCCCTTCCEEEEEETTT-EEEEEECTTTC
T ss_pred             eEEEEEECCCCCEEEEEecCCCCceEEEEECC--------CCCCCceeEEeecCCCCceEEEeeeeCC-EEEEEeCCCCC
Confidence            34678999999755554433  3457777875        221112  22223344566677766554 455555444  


Q ss_pred             --CcEEEEecCC
Q psy4577         320 --HTICLWDINA  329 (384)
Q Consensus       320 --g~i~iwd~~~  329 (384)
                        ..|..+|+.+
T Consensus       343 ~~~~L~~~d~~~  354 (751)
T 2xe4_A          343 VNHKLLIAPRGQ  354 (751)
T ss_dssp             TTCEEEEEETTS
T ss_pred             CCcEEEEEcCCC
Confidence              3666667654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.59  E-value=0.03  Score=48.32  Aligned_cols=75  Identities=4%  Similarity=-0.152  Sum_probs=50.9

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      ...+.|+++|++.+++++-+..+.|..+|+.         +.... ..+.........|++. .+ .++.+-...+.|..
T Consensus       246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d---------G~~~~-~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~  313 (386)
T 3v65_B          246 FWPNGLTIDYAGRRMYWVDAKHHVIERANLD---------GSHRK-AVISQGLPHPFAITVF-ED-SLYWTDWHTKSINS  313 (386)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTTTEEEEECTT---------SCSCE-EEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEE
T ss_pred             CCeeeEEEeCCCCEEEEEECCCCEEEEEeCC---------CCeeE-EEEECCCCCceEEEEE-CC-EEEEeeCCCCeEEE
Confidence            3468999998776677777778889999974         32221 1222233456778883 33 57777777889999


Q ss_pred             EecCCCC
Q psy4577         325 WDINATP  331 (384)
Q Consensus       325 wd~~~~~  331 (384)
                      +|..+++
T Consensus       314 ~~~~~G~  320 (386)
T 3v65_B          314 ANKFTGK  320 (386)
T ss_dssp             EETTTCC
T ss_pred             EECCCCc
Confidence            9976665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.57  E-value=0.012  Score=47.16  Aligned_cols=71  Identities=15%  Similarity=0.224  Sum_probs=49.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC-CC------CceEEEEeCCCCCCeEEEeeC
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQ------KEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~------~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      .+.+++++|...++++.......+.++|.         .+.......+.. ..      ..--.|+|.++| +++++ ++
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~---------~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~lyIv-sE  242 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRALQEVTL---------VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-NIYIV-SE  242 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEECT---------TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-CEEEE-ET
T ss_pred             CceeEEEcCCCCeEEEEECCCCeEEEEcC---------CCCEEEEEEcCCccCCcccccCCCCeeEECCCC-CEEEE-cC
Confidence            46889999977678888888888999997         455444445542 11      256789999998 55555 66


Q ss_pred             CCcEEEEec
Q psy4577         319 DHTICLWDI  327 (384)
Q Consensus       319 Dg~i~iwd~  327 (384)
                      -+.++.+.-
T Consensus       243 ~n~~y~f~~  251 (255)
T 3qqz_A          243 PNRFYRFTP  251 (255)
T ss_dssp             TTEEEEEEC
T ss_pred             CceEEEEEe
Confidence            666666643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.55  E-value=0.031  Score=47.47  Aligned_cols=74  Identities=4%  Similarity=-0.131  Sum_probs=49.7

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      ..+.|+++|++..++.+-+..+.|..+|+.         +.... ..+...-.....|++. .+ .++.+-...+.|...
T Consensus       204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~d---------G~~~~-~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~  271 (349)
T 3v64_C          204 WPNGLTIDYAGRRMYWVDAKHHVIERANLD---------GSHRK-AVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSA  271 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSCE-EEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEE
T ss_pred             CcceEEEeCCCCEEEEEECCCCEEEEEeCC---------CCceE-EEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEE
Confidence            357899998776677777778889999984         32211 1222233456778873 44 566776678899999


Q ss_pred             ecCCCC
Q psy4577         326 DINATP  331 (384)
Q Consensus       326 d~~~~~  331 (384)
                      |..+++
T Consensus       272 ~~~~G~  277 (349)
T 3v64_C          272 NKFTGK  277 (349)
T ss_dssp             ETTTCC
T ss_pred             EccCCC
Confidence            866665

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.48  E-value=0.0084  Score=55.97  Aligned_cols=80  Identities=9%  Similarity=0.018  Sum_probs=52.7

Q ss_pred             CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec-
Q psy4577         267 SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG-  345 (384)
Q Consensus       267 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-  345 (384)
                      |.|..||+.        +++.  +-.+. +..++.+..+...+ .+++.++.||.+++||.++++       .+..+.- 
T Consensus       457 g~l~A~D~~--------tG~~--~W~~~-~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~-------~lw~~~~~  517 (677)
T 1kb0_A          457 GRLLAWDPV--------AQKA--AWSVE-HVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGE-------KLWEAPTG  517 (677)
T ss_dssp             EEEEEEETT--------TTEE--EEEEE-ESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCC-------EEEEEECS
T ss_pred             cEEEEEeCC--------CCcE--EeecC-CCCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCc-------eeeeeeCC
Confidence            678888875        3432  22222 22344445556666 588889999999999999998       8777763 


Q ss_pred             cCCcEeEEEEecCCCccccc
Q psy4577         346 HTAVVELELIERLTKKADPV  365 (384)
Q Consensus       346 h~~~v~~~~~sp~~~~~~~~  365 (384)
                      +.....-+.|.++|+....+
T Consensus       518 ~~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          518 TGVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             SCCCSCCEEEEETTEEEEEE
T ss_pred             CCcccCCEEEEeCCEEEEEE
Confidence            32233446677888765554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.47  E-value=0.029  Score=45.42  Aligned_cols=75  Identities=8%  Similarity=-0.039  Sum_probs=49.0

Q ss_pred             ceEEEEEcCCCCcEEEEEeC--CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         246 EVNRARYMPQNPCVIATKTP--SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ....++++|++.+++++...  .+.|..+++.         +..... .....-.....++++|++..++++-...+.|.
T Consensus       123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d---------g~~~~~-~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~  192 (267)
T 1npe_A          123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD---------GTNRRI-LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (267)
T ss_dssp             SEEEEEEETTTTEEEEEECCSSSCEEEEEETT---------SCCCEE-EECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CccEEEEeeCCCEEEEEECCCCCcEEEEEecC---------CCCcEE-EEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence            45789999965556666543  4688888873         322111 11122245789999998634556666778999


Q ss_pred             EEecCCC
Q psy4577         324 LWDINAT  330 (384)
Q Consensus       324 iwd~~~~  330 (384)
                      ++|....
T Consensus       193 ~~~~~g~  199 (267)
T 1npe_A          193 CLNPAQP  199 (267)
T ss_dssp             EEETTEE
T ss_pred             EEecCCC
Confidence            9999764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.45  E-value=0.021  Score=49.72  Aligned_cols=65  Identities=15%  Similarity=0.108  Sum_probs=41.9

Q ss_pred             CCCCCCCCceEEEee-C-CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSG-T-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~-~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~   78 (384)
                      +.|+|||+. |.++. . +++|.+.|+.+              .+++..+.--  .  +....|++...+++.+.||++.
T Consensus       182 ~~~spDGk~-lyV~n~~~~~~VsVID~~t--------------~kvv~~I~v~--g--~~~~~p~g~~~~v~~~~dG~~~  242 (426)
T 3c75_H          182 NALTPDNKN-LLFYQFSPAPAVGVVDLEG--------------KTFDRMLDVP--D--CYHIFPASPTVFYMNCRDGSLA  242 (426)
T ss_dssp             SEECTTSSE-EEEEECSSSCEEEEEETTT--------------TEEEEEEECC--S--EEEEEEEETTEEEEEETTSSEE
T ss_pred             EEEcCCCCE-EEEEecCCCCeEEEEECCC--------------CeEEEEEEcC--C--ceeeccCCCcEEEEEcCCCCEE
Confidence            468999985 55544 3 68899999987              3555444321  1  1344566554666777888888


Q ss_pred             EEEccc
Q psy4577          79 ILSVVC   84 (384)
Q Consensus        79 vwd~~~   84 (384)
                      +.+...
T Consensus       243 ~V~~~~  248 (426)
T 3c75_H          243 RVDFAD  248 (426)
T ss_dssp             EEECCT
T ss_pred             EEECCC
Confidence            777744

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.44  E-value=0.0033  Score=56.51  Aligned_cols=85  Identities=13%  Similarity=0.081  Sum_probs=51.9

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCce-----EEEEeCCCCCCeEEEeeC-
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEG-----YGLSWNPSLNGYLLSASD-  318 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i-----~~~~~s~~~~~~l~s~s~-  318 (384)
                      .....++|+|+| +.+++.-.|+.|.+||+........-......+..+.-|-.+-     .++..+||| ++|++... 
T Consensus       331 ~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG-k~l~~~Nk~  408 (595)
T 1fwx_A          331 LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN-DWLVCLSKF  408 (595)
T ss_dssp             SCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS-SEEEEEESC
T ss_pred             CCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC-CEEEEcCCC
Confidence            346789999999 7888889999999999862000000000122344554444322     234668999 78877653 


Q ss_pred             C-CcE-----------EEEecCCCC
Q psy4577         319 D-HTI-----------CLWDINATP  331 (384)
Q Consensus       319 D-g~i-----------~iwd~~~~~  331 (384)
                      . .++           .++|+..++
T Consensus       409 skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          409 SKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             CccccccCCCCCCCcceEEEcCCCc
Confidence            2 344           889996543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.44  E-value=0.026  Score=52.83  Aligned_cols=82  Identities=7%  Similarity=-0.024  Sum_probs=54.0

Q ss_pred             CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec
Q psy4577         266 SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG  345 (384)
Q Consensus       266 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  345 (384)
                      +|.|+.||+.        +++.  +-.+..+. ++..-.+...+ .+++.|+.||.|+.||.++++       .+..++.
T Consensus       454 ~g~l~A~D~~--------tG~~--~W~~~~~~-~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~-------~lw~~~~  514 (689)
T 1yiq_A          454 SGKLIAWDPV--------KQQA--AWEVPYVT-IFNGGTLSTAG-NLVFEGSADGRVIAYAADTGE-------KLWEQPA  514 (689)
T ss_dssp             EEEEEEEETT--------TTEE--EEEEEESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCC-------EEEEEEC
T ss_pred             ceeEEEEECC--------CCCe--EeEccCCC-CccCccceECC-CEEEEECCCCcEEEEECCCCc-------cceeeeC
Confidence            4778888886        4432  22333232 23333455566 689999999999999999998       8877764


Q ss_pred             cCCc-EeEEEEecCCCcccccc
Q psy4577         346 HTAV-VELELIERLTKKADPVC  366 (384)
Q Consensus       346 h~~~-v~~~~~sp~~~~~~~~c  366 (384)
                      ..+. ..-+.|..+|++..++.
T Consensus       515 ~~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          515 ASGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             SSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCcccCceEEEECCEEEEEEE
Confidence            3322 24567788888665553

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.29  E-value=0.02  Score=47.84  Aligned_cols=95  Identities=9%  Similarity=0.051  Sum_probs=55.6

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ...+.++...+++. +.+ ++.++.|..+|.         .+..  +..+......+..+...+++  .|..++.+|.|.
T Consensus       214 ~~~~~~~~~~~~g~-l~v-~t~~~gl~~~~~---------~g~~--~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~  278 (330)
T 3hxj_A          214 YWTVTRPAISEDGT-IYV-TSLDGHLYAINP---------DGTE--KWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLY  278 (330)
T ss_dssp             SCCCSCCEECTTSC-EEE-EETTTEEEEECT---------TSCE--EEEEECSSCCCSCCEECTTS--CEEEECTTCEEE
T ss_pred             CcceeceEECCCCe-EEE-EcCCCeEEEECC---------CCCE--eEEeeCCCCccccceEcCCC--eEEEecCCCCEE
Confidence            35577788888873 444 566778888874         2322  22333333334455666665  566777888999


Q ss_pred             EEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577         324 LWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK  361 (384)
Q Consensus       324 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  361 (384)
                      .+|. +++       .+..+......+.++...+++..
T Consensus       279 ~~d~-~g~-------~~~~~~~~~~~~~~~~~d~~g~l  308 (330)
T 3hxj_A          279 AINP-DGT-------EKWNFETGSWIIATPVIDENGTI  308 (330)
T ss_dssp             EECT-TSC-------EEEEEECSSCCCSCCEECTTCCE
T ss_pred             EECC-CCc-------EEEEEEcCCccccceEEcCCCEE
Confidence            9996 454       44444433444555555555553

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.27  E-value=0.079  Score=45.89  Aligned_cols=76  Identities=8%  Similarity=-0.079  Sum_probs=50.7

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccc-eeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHP-DLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ...+.|+++|++.+++.+-+..+.|..+|+.         +.... +....+.-....+|+...+  .++.+-...+.|.
T Consensus       246 ~~P~glavd~~~~~lY~aD~~~~~I~~~d~d---------G~~~~~~~~~~~~l~~P~gl~v~~~--~lywtd~~~~~V~  314 (400)
T 3p5b_L          246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIF  314 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCCCEEEEECSSTTSSEEEEEEETT--EEEEEESSSCSEE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEeCC---------CCccEEEEeCCCCCCCCEEEEEeCC--EEEEecCCCCeEE
Confidence            4578999998876677776777889999984         32222 2121122234567777333  5777777788999


Q ss_pred             EEecCCCC
Q psy4577         324 LWDINATP  331 (384)
Q Consensus       324 iwd~~~~~  331 (384)
                      .+|..+++
T Consensus       315 ~~~~~~G~  322 (400)
T 3p5b_L          315 SANRLTGS  322 (400)
T ss_dssp             EEESSSCC
T ss_pred             EEEcCCCC
Confidence            99977776

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.26  E-value=0.047  Score=43.19  Aligned_cols=67  Identities=9%  Similarity=-0.012  Sum_probs=39.5

Q ss_pred             CCCCCCCceEEEeeCCC--eEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           2 QWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      .|++ + .++.+.+.+|  +|+++|+.+              .+++....-. .........+.+..+....-.++.+.+
T Consensus        27 ~~~~-~-~LyestG~~g~S~v~~vD~~t--------------gkv~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           27 FYLR-G-HLYESTGETGRSSVRKVDLET--------------GRILQRAEVP-PPYFGAGIVAWRDRLIQLTWRNHEGFV   89 (243)
T ss_dssp             EEET-T-EEEEEECCTTSCEEEEEETTT--------------CCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEEC-C-EEEEECCCCCCceEEEEECCC--------------CCEEEEEeCC-CCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence            3554 3 4667766654  899999987              2444333221 122222223334546656667899999


Q ss_pred             EEcccC
Q psy4577          80 LSVVCV   85 (384)
Q Consensus        80 wd~~~~   85 (384)
                      +|..+.
T Consensus        90 ~D~~tl   95 (243)
T 3mbr_X           90 YDLATL   95 (243)
T ss_dssp             EETTTT
T ss_pred             EECCcC
Confidence            999775

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.24  E-value=0.032  Score=44.68  Aligned_cols=93  Identities=6%  Similarity=-0.107  Sum_probs=59.0

Q ss_pred             CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC---ceEEEEeCCCCCCeEEEeeCCCcEEEEecCCC
Q psy4577         254 PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK---EGYGLSWNPSLNGYLLSASDDHTICLWDINAT  330 (384)
Q Consensus       254 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~  330 (384)
                      ++++.++++ ..++.|.++|..        +...........+..   .++.+.|. +| .+++..-.+..|.+-|.+++
T Consensus       143 ~Dg~~L~vS-dGs~~l~~iDp~--------T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG  211 (268)
T 3nok_A          143 YWNGKLVRS-DGGTMLTFHEPD--------GFALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSDVLEIDPATG  211 (268)
T ss_dssp             EETTEEEEE-CSSSEEEEECTT--------TCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTC
T ss_pred             cCCCEEEEE-CCCCEEEEEcCC--------CCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCeEEEEeCCCC
Confidence            456545555 458899999975        332222222222222   45667776 66 56666667889999999999


Q ss_pred             CCCCccccceeeeec-------------cCCcEeEEEEecCCCcccc
Q psy4577         331 PKENRVIDAKTIFTG-------------HTAVVELELIERLTKKADP  364 (384)
Q Consensus       331 ~~~~~~~~~~~~~~~-------------h~~~v~~~~~sp~~~~~~~  364 (384)
                      +       .+..+.-             -....+.++|.|++..+..
T Consensus       212 ~-------V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfV  251 (268)
T 3nok_A          212 T-------VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFM  251 (268)
T ss_dssp             B-------EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEE
T ss_pred             c-------EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEE
Confidence            7       5555432             1135789999998875443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.23  E-value=0.075  Score=44.93  Aligned_cols=122  Identities=14%  Similarity=0.115  Sum_probs=72.5

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC-CCCCeEEEeeCC-CcE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP-SLNGYLLSASDD-HTI  322 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~~l~s~s~D-g~i  322 (384)
                      ..-+.++|+|+++.++++-+..+.|+.|++..       .+.......+ ...+..-.+++.+ +| ++.+++..+ +.|
T Consensus       221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~-------~g~l~~~~~~-~~~g~PDGi~vD~e~G-~lwva~~~~g~~v  291 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLAHKIHVYEKHA-------NWTLTPLRVL-SFDTLVDNISVDPVTG-DLWVGCHPNGMRI  291 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECT-------TSCEEEEEEE-ECSSEEEEEEECTTTC-CEEEEEESCHHHH
T ss_pred             cccCcceECCCCCEEEEEeCCCCeEEEEEECC-------CCcEecCEEE-eCCCCCceEEEeCCCC-cEEEEecCCceEE
Confidence            34689999999987777777889999999853       2222222233 2235567899999 58 677766644 455


Q ss_pred             EEEecCCCCCCCccccceeeee---ccCCcEeEEEEecCCCcccccccccccceeeEEEEEee
Q psy4577         323 CLWDINATPKENRVIDAKTIFT---GHTAVVELELIERLTKKADPVCTLEKAKKKKEVVVTMF  382 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~~~~~~~~~  382 (384)
                      ..|+.....  +.   .+..++   +-...|+.+ |..+|+.+.++..... .+++-.+-++|
T Consensus       292 ~~~~P~~~~--~s---~v~rI~~~~~~~~~v~~v-~~ddG~~l~~~T~a~~-~~g~L~iGsv~  347 (355)
T 3sre_A          292 FFYDAENPP--GS---EVLRIQDILSEEPKVTVV-YAENGTVLQGSTVAAV-YKGKLLIGTVF  347 (355)
T ss_dssp             HSCCTTSCC--CE---EEEEEECTTSSSCEEEEE-EEECSSSCCSEEEEEE-ETTEEEEEESS
T ss_pred             EEECCCCCC--CC---EEEEEEccCCCCcEEEEE-EEcCCCEEEeeEEEEE-ECCEEEEEEcC
Confidence            555554211  11   222222   123445555 7779998776655543 34444444544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.19  E-value=0.0041  Score=58.22  Aligned_cols=75  Identities=8%  Similarity=-0.072  Sum_probs=48.3

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcc-ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECH-PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      ..+.|+++|++.+++++-+..+.|.++++.         +... .+....+.-.....|++..+  +++++....++|..
T Consensus       541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~d---------G~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~  609 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFS  609 (699)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEECSS---------SSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEE
T ss_pred             CccEEEEeccCCEEEEEecCCCeEEEEccC---------CCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEE
Confidence            457899999876688887778899999984         2211 11111111123345566544  46777777889999


Q ss_pred             EecCCCC
Q psy4577         325 WDINATP  331 (384)
Q Consensus       325 wd~~~~~  331 (384)
                      +|..+++
T Consensus       610 ~d~~~G~  616 (699)
T 1n7d_A          610 ANRLTGS  616 (699)
T ss_dssp             EETTTEE
T ss_pred             EEccCCC
Confidence            9987665

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.05  E-value=0.0088  Score=50.13  Aligned_cols=100  Identities=9%  Similarity=-0.047  Sum_probs=55.6

Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ..........+.++...+++  .+..++  +.|..+| .        ++..  +.........+.++...++|  .|..+
T Consensus       169 ~~~~~~~~~~~~~~~~d~~g--~l~v~t--~~l~~~d-~--------~g~~--~~~~~~~~~~~~~~~~~~~g--~l~v~  231 (330)
T 3hxj_A          169 KWRFKTNDAITSAASIGKDG--TIYFGS--DKVYAIN-P--------DGTE--KWNFYAGYWTVTRPAISEDG--TIYVT  231 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTC--CEEEES--SSEEEEC-T--------TSCE--EEEECCSSCCCSCCEECTTS--CEEEE
T ss_pred             eEEEecCCCceeeeEEcCCC--EEEEEe--CEEEEEC-C--------CCcE--EEEEccCCcceeceEECCCC--eEEEE
Confidence            33343344455555555543  777776  6677777 3        3432  33444444567777777775  34556


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK  361 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  361 (384)
                      +.++.|..+| .+++       .+..+......+..+...+++..
T Consensus       232 t~~~gl~~~~-~~g~-------~~~~~~~~~~~~~~~~~~~~g~l  268 (330)
T 3hxj_A          232 SLDGHLYAIN-PDGT-------EKWRFKTGKRIESSPVIGNTDTI  268 (330)
T ss_dssp             ETTTEEEEEC-TTSC-------EEEEEECSSCCCSCCEECTTSCE
T ss_pred             cCCCeEEEEC-CCCC-------EeEEeeCCCCccccceEcCCCeE
Confidence            6678888774 5454       66555544444555555444443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.98  E-value=0.26  Score=46.70  Aligned_cols=75  Identities=8%  Similarity=-0.052  Sum_probs=48.8

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC--CCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG--HQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      ...++|++++.+.+++++-...+.|..+++.         +..... .+..  .-....+|++..+  +++++-...++|
T Consensus       558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d---------G~~~~~-v~~~~~~l~~P~glav~~~--~lYwtD~~~~~I  625 (791)
T 3m0c_C          558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNRKT-ILEDEKRLAHPFSLAVFED--KVFWTDIINEAI  625 (791)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSCEE-EEECTTTTSSEEEEEEETT--EEEEEETTTTEE
T ss_pred             CCceEEEEecCCCeEEEEeCCCCcEEEEecC---------CCceEE-EecCCCccCCCCEEEEeCC--EEEEEECCCCEE
Confidence            4678999998776677776677889999984         332222 2222  2224457776433  466666677889


Q ss_pred             EEEecCCCC
Q psy4577         323 CLWDINATP  331 (384)
Q Consensus       323 ~iwd~~~~~  331 (384)
                      ...|..+++
T Consensus       626 ~~~dk~tG~  634 (791)
T 3m0c_C          626 FSANRLTGS  634 (791)
T ss_dssp             EEEETTTCC
T ss_pred             EEEeCCCCc
Confidence            888887775

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.96  E-value=0.11  Score=48.42  Aligned_cols=69  Identities=13%  Similarity=0.077  Sum_probs=41.6

Q ss_pred             CCC-CCCceEEEeeCCC-----------eEEEeecCCcCcccccCCCCCCCCeeEEEe-cccccceEEEEEccCCCcEEE
Q psy4577           3 WSP-HNETILASSGTDR-----------RLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWVIC   69 (384)
Q Consensus         3 fsp-~~~~~lat~~~d~-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~l~~~~~~~~~l~   69 (384)
                      +.| ++. +++.|+.+.           .+.+||..+..            ...+..+ ..+.....++++.+++. +++
T Consensus       193 v~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~------------w~~~~~~~~~~~~~~~~~~~~~~g~-lyv  258 (656)
T 1k3i_A          193 IEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGI------------VSDRTVTVTKHDMFCPGISMDGNGQ-IVV  258 (656)
T ss_dssp             EETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCC------------BCCCEEEECSCCCSSCEEEECTTSC-EEE
T ss_pred             EEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCc------------EEeCcccCCCCCCccccccCCCCCC-EEE
Confidence            345 454 777776543           57788887622            1122222 22333344577888888 777


Q ss_pred             EEec-CCeEEEEEcccC
Q psy4577          70 SVSE-DNIMQILSVVCV   85 (384)
Q Consensus        70 s~s~-D~~i~vwd~~~~   85 (384)
                      .|+. +..+.+||+.+.
T Consensus       259 ~GG~~~~~v~~yd~~t~  275 (656)
T 1k3i_A          259 TGGNDAKKTSLYDSSSD  275 (656)
T ss_dssp             ECSSSTTCEEEEEGGGT
T ss_pred             eCCCCCCceEEecCcCC
Confidence            7774 468999998763

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.88  E-value=0.15  Score=42.44  Aligned_cols=76  Identities=8%  Similarity=-0.095  Sum_probs=51.3

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcc-ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECH-PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ...+.++++|++..++.+-+..+.|..+|+.         +... .+......-.....+++.. + .++++-...++|.
T Consensus       164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d---------g~~~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~  232 (316)
T 1ijq_A          164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNRKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIF  232 (316)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSCEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEE
T ss_pred             CCceEEEEeccCCEEEEEECCCCeEEEEecC---------CCceEEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEE
Confidence            4578999999876677777778899999984         3221 1212111223456777753 4 5777777788999


Q ss_pred             EEecCCCC
Q psy4577         324 LWDINATP  331 (384)
Q Consensus       324 iwd~~~~~  331 (384)
                      .+|..+++
T Consensus       233 ~~~~~~g~  240 (316)
T 1ijq_A          233 SANRLTGS  240 (316)
T ss_dssp             EEETTTCC
T ss_pred             EEeCCCCc
Confidence            99987775

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.81  E-value=0.13  Score=40.65  Aligned_cols=92  Identities=8%  Similarity=-0.010  Sum_probs=56.9

Q ss_pred             CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC---CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCC
Q psy4577         254 PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ---KEGYGLSWNPSLNGYLLSASDDHTICLWDINAT  330 (384)
Q Consensus       254 p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~  330 (384)
                      ++++.+++| ..++.|.++|..        +...........+.   ..++.+.|. +| .+++..-.+..|.+-|.+++
T Consensus       112 ~dg~~L~vS-dgs~~l~~iDp~--------t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG  180 (243)
T 3mbr_X          112 SDDSHLYMS-DGTAVIRKLDPD--------TLQQVGSIKVTAGGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASG  180 (243)
T ss_dssp             ECSSCEEEE-CSSSEEEEECTT--------TCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTC
T ss_pred             eCCCEEEEE-CCCCeEEEEeCC--------CCeEEEEEEEccCCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCC
Confidence            456556666 457889999975        22222222222222   245566665 55 56666656789999999999


Q ss_pred             CCCCccccceeeeec-------------cCCcEeEEEEecCCCccc
Q psy4577         331 PKENRVIDAKTIFTG-------------HTAVVELELIERLTKKAD  363 (384)
Q Consensus       331 ~~~~~~~~~~~~~~~-------------h~~~v~~~~~sp~~~~~~  363 (384)
                      +       .+..+.-             -....+.++|+|++..+.
T Consensus       181 ~-------V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf  219 (243)
T 3mbr_X          181 K-------VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF  219 (243)
T ss_dssp             B-------EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred             C-------EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence            7       5554431             113568999999887544

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.76  E-value=0.052  Score=47.56  Aligned_cols=72  Identities=18%  Similarity=0.259  Sum_probs=48.5

Q ss_pred             eEEEEEcC-CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC-eEEEeeCCCcEEE
Q psy4577         247 VNRARYMP-QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG-YLLSASDDHTICL  324 (384)
Q Consensus       247 v~~v~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~-~l~s~s~Dg~i~i  324 (384)
                      ...++++| ++ +++++-..++.|+.++..        .+....+.... ....-..++|+|+| + ++++-...+.|..
T Consensus       228 p~giavdp~~g-~lyv~d~~~~~V~~~~~~--------~~~~~~~~~~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          228 CNGAETHPING-ELYFNSWNAGQVFRYDFT--------TQETTPLFTIQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILR  296 (430)
T ss_dssp             CCCEEECTTTC-CEEEEETTTTEEEEEETT--------TTEEEEEEECS-SSSCCEEEEECTTS-SEEEEEETTTTEEEE
T ss_pred             ceEEEEeCCCC-EEEEEECCCCEEEEEECC--------CCcEEEEEEcC-CCCcceeEEEcCCC-CEEEEEECCCCEEEE
Confidence            45678899 55 577777778889999974        22211222222 22356789999998 6 5666667889999


Q ss_pred             EecCC
Q psy4577         325 WDINA  329 (384)
Q Consensus       325 wd~~~  329 (384)
                      ++...
T Consensus       297 ~~~d~  301 (430)
T 3tc9_A          297 SDYDW  301 (430)
T ss_dssp             EEEET
T ss_pred             EeCCc
Confidence            88764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.75  E-value=0.25  Score=43.19  Aligned_cols=73  Identities=11%  Similarity=0.132  Sum_probs=45.8

Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCC---------------CCceEEEEe-------
Q psy4577         248 NRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH---------------QKEGYGLSW-------  305 (384)
Q Consensus       248 ~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h---------------~~~i~~~~~-------  305 (384)
                      ..++|+|++..++++-...+.|+.+++....      +.......+.+.               -..-..+++       
T Consensus       276 ~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~------~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~  349 (433)
T 4hw6_A          276 FHIVWHPTGDWAYIIYNGKHCIYRVDYNRET------GKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA  349 (433)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEBCTTT------CCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEEeCCCCC------cccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence            3699999996577776778899998874211      111101111111               123567898       


Q ss_pred             --CCCCCCeEEEeeCCCcEEEEec
Q psy4577         306 --NPSLNGYLLSASDDHTICLWDI  327 (384)
Q Consensus       306 --s~~~~~~l~s~s~Dg~i~iwd~  327 (384)
                        .++| .++++-...++|+.++.
T Consensus       350 ~dd~~g-~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          350 GEEDEY-DFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             TSSCCE-EEEEEETTTTEEEEECT
T ss_pred             ccCCCC-cEEEEECCCCEEEEECC
Confidence              7777 57777777789999885

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.74  E-value=0.2  Score=41.76  Aligned_cols=70  Identities=4%  Similarity=-0.104  Sum_probs=39.6

Q ss_pred             eEEEEEcCCCCcEEEEEeC----------CCcEEEEecCCCCCCCCCCCCccceeeecCC----CCceEEEEeCCCCCCe
Q psy4577         247 VNRARYMPQNPCVIATKTP----------SSDVLVFDYTKHPSKPDPNGECHPDLRLRGH----QKEGYGLSWNPSLNGY  312 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h----~~~i~~~~~s~~~~~~  312 (384)
                      ...+++.++|. ++++...          .+.|..+|.         .+..  +..+...    -..++++++ .++ .+
T Consensus       231 P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~---------~G~~--~~~~~~~~g~~~~~~~~~~~-~~g-~L  296 (322)
T 2fp8_A          231 PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDE---------FGNI--LEVIPLPPPFAGEHFEQIQE-HDG-LL  296 (322)
T ss_dssp             EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECT---------TSCE--EEEEECCTTTTTSCCCEEEE-ETT-EE
T ss_pred             CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECC---------CCCE--EEEEECCCCCccccceEEEE-eCC-EE
Confidence            56678888884 5555433          345666664         2322  2222221    234666666 355 57


Q ss_pred             EEEeeCCCcEEEEecCCC
Q psy4577         313 LLSASDDHTICLWDINAT  330 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~~  330 (384)
                      +++....+.|..+++...
T Consensus       297 ~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          297 YIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEECSSCSEEEEEEC---
T ss_pred             EEeecCCCceEEEecccc
Confidence            777777889999988643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.63  E-value=0.24  Score=41.30  Aligned_cols=74  Identities=8%  Similarity=-0.011  Sum_probs=50.8

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      ..+.|+++|++..++.+=+..+.|..+|+.         +..... .+.+.......+++..+  .++.+-...+.|..+
T Consensus       167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~d---------G~~~~~-~~~~~~~~P~glav~~~--~lywtd~~~~~V~~~  234 (318)
T 3sov_A          167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLD---------GTNRQA-VVKGSLPHPFALTLFED--ILYWTDWSTHSILAC  234 (318)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSCEE-EECSCCSCEEEEEEETT--EEEEEETTTTEEEEE
T ss_pred             CccEEEEeccCCEEEEEECCCCEEEEEcCC---------CCceEE-EecCCCCCceEEEEeCC--EEEEEecCCCeEEEE
Confidence            357899999776677777778899999984         322211 22223345667777543  467776677899999


Q ss_pred             ecCCCC
Q psy4577         326 DINATP  331 (384)
Q Consensus       326 d~~~~~  331 (384)
                      |..+++
T Consensus       235 ~~~~G~  240 (318)
T 3sov_A          235 NKYTGE  240 (318)
T ss_dssp             ETTTCC
T ss_pred             ECCCCC
Confidence            997776

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.53  E-value=0.35  Score=42.85  Aligned_cols=30  Identities=10%  Similarity=-0.059  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYT  275 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~  275 (384)
                      ....|+|+|++..++++-+....|+.++..
T Consensus       311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          311 WEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            346899999996456666777889987764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.50  E-value=0.014  Score=55.34  Aligned_cols=103  Identities=11%  Similarity=0.113  Sum_probs=62.6

Q ss_pred             ceEEEEEc-CCCCcEEEEEeCCC----cEEEEecCCCCCCCCCCC-CccceeeecCCCCceEEEEeCCCCCCeEEEeeCC
Q psy4577         246 EVNRARYM-PQNPCVIATKTPSS----DVLVFDYTKHPSKPDPNG-ECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD  319 (384)
Q Consensus       246 ~v~~v~~~-p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D  319 (384)
                      .+...+|| |+|+.+..+.+.+|    .|+++|+.        .+ ...+ ..+..   ....++|+||| +.|+-...|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~--------~g~~~l~-~~~~~---~~~~~~WspDg-~~l~y~~~d  241 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRIS--------DPSQTIA-DKVSG---TNGEIVWGPDH-TSLFYVTKD  241 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETT--------CTTCCCC-CCEEE---ECSCCEECSST-TEEEEEEEC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECC--------CCCEeCC-ccccC---ceeeEEEecCC-CEEEEEEEC
Confidence            57789999 99974444444333    49999986        33 2111 01111   13478999998 566666655


Q ss_pred             -----CcEEEEecCCCCCCCccccceeeee-ccCCcEeEEEEecCCCcccccc
Q psy4577         320 -----HTICLWDINATPKENRVIDAKTIFT-GHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       320 -----g~i~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                           ..|+++++.+++..     ....+. .+......+.|||||+.++-..
T Consensus       242 ~~~~~~~v~~~~lgt~~~~-----~~lv~~~~~~~~~~~~~~SpDg~~l~~~~  289 (751)
T 2xe4_A          242 ETLRENKVWRHVMGKLQSE-----DVCLYEEHNPLFSAFMYKAADTNTLCIGS  289 (751)
T ss_dssp             TTCCEEEEEEEETTSCGGG-----CEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred             CCCCCCEEEEEECCCCchh-----cEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence                 36888888775410     122222 2334567889999999766544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.35  E-value=0.099  Score=41.84  Aligned_cols=114  Identities=10%  Similarity=0.088  Sum_probs=74.0

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      +-...+..++|+|++..++++...++.|...|.         ++.......+.+. ...-.|++.+++ .++++.-.++.
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~---------~g~v~~~i~l~g~-~D~EGIa~~~~g-~~~vs~E~~~~   92 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTT---------NGDLIRTIPLDFV-KDLETIEYIGDN-QFVISDERDYA   92 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEET---------TCCEEEEEECSSC-SSEEEEEECSTT-EEEEEETTTTE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeC---------CCCEEEEEecCCC-CChHHeEEeCCC-EEEEEECCCCc
Confidence            444679999999987667777888888888887         3333232233433 457789999987 67677667789


Q ss_pred             EEEEecCCCCCCCcccccee-ee--eccCCcEeEEEEecCCCccccccc
Q psy4577         322 ICLWDINATPKENRVIDAKT-IF--TGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       322 i~iwd~~~~~~~~~~~~~~~-~~--~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      +.++++...... ....... .+  ...+.....++|.|.+..+..++.
T Consensus        93 l~~~~v~~~~~i-~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E  140 (255)
T 3qqz_A           93 IYVISLTPNSEV-KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE  140 (255)
T ss_dssp             EEEEEECTTCCE-EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE
T ss_pred             EEEEEcCCCCee-eeeeeeccccccccccCCcceEEEeCCCCEEEEEEC
Confidence            999998765410 0000110 01  113445789999999876655543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.25  E-value=0.0081  Score=51.26  Aligned_cols=69  Identities=6%  Similarity=-0.116  Sum_probs=50.0

Q ss_pred             CCCCCCCceEEEee---C-----CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEe-
Q psy4577           2 QWSPHNETILASSG---T-----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS-   72 (384)
Q Consensus         2 ~fsp~~~~~lat~~---~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s-   72 (384)
                      +|+|++..++++..   .     ++.+.++|+.+              .+.+..+.... ...+|+|+|+|+.++++.. 
T Consensus       270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t--------------~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~  334 (368)
T 1mda_H          270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV--------------GQTSGPISNGH-DSDAIIAAQDGASDNYANSA  334 (368)
T ss_dssp             EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS--------------CCEEECCEEEE-EECEEEECCSSSCEEEEEET
T ss_pred             EEcCCCCEEEEEeccccCcccccCCCEEEEECCC--------------CeEEEEEECCC-CcceEEECCCCCEEEEEccC
Confidence            47889886555433   2     23466999987              34455444332 5889999999987777887 


Q ss_pred             cCCeEEEEEcccC
Q psy4577          73 EDNIMQILSVVCV   85 (384)
Q Consensus        73 ~D~~i~vwd~~~~   85 (384)
                      .+++|.++|+.+.
T Consensus       335 ~~~~VsVID~~t~  347 (368)
T 1mda_H          335 GTEVLDIYDAASD  347 (368)
T ss_dssp             TTTEEEEEESSSC
T ss_pred             CCCeEEEEECCCC
Confidence            6999999999886

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.17  E-value=0.08  Score=45.42  Aligned_cols=106  Identities=8%  Similarity=0.094  Sum_probs=66.6

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCC--CccceeeecC------CCCceEEEEeCCCCC--CeEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNG--ECHPDLRLRG------HQKEGYGLSWNPSLN--GYLLS  315 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~------h~~~i~~~~~s~~~~--~~l~s  315 (384)
                      .|..+..+|+|. +||..+ +..|.|-.+..........+  .......+.-      ...+|..+.|||-+.  ..|++
T Consensus        67 ~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            577899999995 888765 66899998873222211101  0001112211      246899999999542  38999


Q ss_pred             eeCCCcEEEEecCCCCCCCccccceeeee---------ccCCcEeEEEEecCC
Q psy4577         316 ASDDHTICLWDINATPKENRVIDAKTIFT---------GHTAVVELELIERLT  359 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~---------~h~~~v~~~~~sp~~  359 (384)
                      -..|++|++||+......     |. .+.         .+-..|.+++|.+++
T Consensus       145 LtsD~~Ir~yDl~~s~~~-----P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~  191 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEK-----PI-VLNKPNNSFGLDARVNDITDLEFSKDG  191 (452)
T ss_dssp             EETTSCEEEEETTCTTSC-----CE-EESCCCSEEESCSSCCCEEEEEECTTS
T ss_pred             EecCCEEEEEEcccCCCC-----Cc-chhccccccCCCcccceEEEEEEcCCC
Confidence            999999999999974321     22 221         122567888888843

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.76  E-value=1  Score=41.90  Aligned_cols=85  Identities=9%  Similarity=0.077  Sum_probs=52.2

Q ss_pred             CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee
Q psy4577         265 PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT  344 (384)
Q Consensus       265 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  344 (384)
                      .+|.|+-||+.        ++..  +-....+ .+.....+...+ .+++.++.||.++.||.++++       .+..+.
T Consensus       436 ~~g~l~A~D~~--------tG~~--~W~~~~~-~~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~-------~l~~~~  496 (668)
T 1kv9_A          436 VSGALLAWDPV--------KQKA--AWKVPYP-THWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGE-------ALWQFE  496 (668)
T ss_dssp             CEEEEEEEETT--------TTEE--EEEEEES-SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCC-------EEEEEE
T ss_pred             ccceEEEEeCC--------CCcE--EEEccCC-CCCcCceeEeCC-CEEEEECCcccchhhhhhcCh-------hheEec
Confidence            45789999986        4432  2222211 222223333455 588889999999999999998       776665


Q ss_pred             ccCCcE-eEEEEecCCCcccccccc
Q psy4577         345 GHTAVV-ELELIERLTKKADPVCTL  368 (384)
Q Consensus       345 ~h~~~v-~~~~~sp~~~~~~~~c~~  368 (384)
                      -..... .-+.+..+|+...++|..
T Consensus       497 ~~~~~~~~p~~~~~~G~~yva~~~G  521 (668)
T 1kv9_A          497 AQSGIVAAPMTFELAGRQYVAIMAG  521 (668)
T ss_dssp             CSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CCCCcccCceEEEECCEEEEEEEec
Confidence            432211 234556777776666664

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.72  E-value=0.79  Score=38.69  Aligned_cols=75  Identities=11%  Similarity=0.014  Sum_probs=49.6

Q ss_pred             ceEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPS-SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      ..+.++++|.+..++.+-..+ +.|..+++.         +..... .+...-...+.|+++|++.+++++-+..+.|..
T Consensus       160 ~P~~iavdp~~g~ly~td~~~~~~I~r~~~d---------G~~~~~-~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~  229 (349)
T 3v64_C          160 KPRAIALHPMEGTIYWTDWGNTPRIEASSMD---------GSGRRI-IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER  229 (349)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCSCEE-SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CcceEEEecCcCeEEEeccCCCCEEEEEeCC---------CCCcEE-EEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence            457899999665677776655 788888873         322111 112223357899999876355566566789999


Q ss_pred             EecCCC
Q psy4577         325 WDINAT  330 (384)
Q Consensus       325 wd~~~~  330 (384)
                      +|+...
T Consensus       230 ~~~dG~  235 (349)
T 3v64_C          230 ANLDGS  235 (349)
T ss_dssp             EETTSC
T ss_pred             EeCCCC
Confidence            998764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.68  E-value=0.65  Score=38.80  Aligned_cols=69  Identities=10%  Similarity=0.081  Sum_probs=39.8

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCC-ccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGE-CHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      .+..+.+.+++. +++++. +|.|. +...        .+. ...+.........+.++.|.+++  .++.++.+|.|.-
T Consensus       251 ~~~~v~~~~~~~-~~~~g~-~g~i~-~S~D--------gG~tW~~~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~  317 (327)
T 2xbg_A          251 GFLDLAYRTPNE-VWLAGG-AGALL-CSQD--------GGQTWQQDVDVKKVPSNFYKILFFSPD--QGFILGQKGILLR  317 (327)
T ss_dssp             CEEEEEESSSSC-EEEEES-TTCEE-EESS--------TTSSCEECGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEE
T ss_pred             ceEEEEecCCCE-EEEEeC-CCeEE-EeCC--------CCcccEEcCccCCCCCCeEEEEEECCC--ceEEEcCCceEEE
Confidence            467888888774 666654 67663 3322        121 11111111233467888887554  5667778898877


Q ss_pred             Eec
Q psy4577         325 WDI  327 (384)
Q Consensus       325 wd~  327 (384)
                      ++-
T Consensus       318 ~~~  320 (327)
T 2xbg_A          318 YVT  320 (327)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.46  E-value=0.92  Score=37.66  Aligned_cols=72  Identities=10%  Similarity=0.184  Sum_probs=44.8

Q ss_pred             eEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCCCCccceeee----cCCCCceEEEEeCCCCCCeEEEeeCCCc
Q psy4577         247 VNRARYMPQNPCVIATKTPS-SDVLVFDYTKHPSKPDPNGECHPDLRL----RGHQKEGYGLSWNPSLNGYLLSASDDHT  321 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~----~~h~~~i~~~~~s~~~~~~l~s~s~Dg~  321 (384)
                      .+.++..++| +..++++.. +.|...+.         .+......-+    .......+.|+++|+| ++|+....+|.
T Consensus       139 ~nDvavD~~G-naYVt~s~~~~~I~rV~p---------dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~  207 (334)
T 2p9w_A          139 VVQSAQDRDG-NSYVAFALGMPAIARVSA---------DGKTVSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRA  207 (334)
T ss_dssp             EEEEEECTTS-CEEEEEEESSCEEEEECT---------TSCCEEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSS
T ss_pred             CceeEECCCC-CEEEeCCCCCCeEEEEeC---------CCCEEeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCe
Confidence            5677777777 477777666 66655554         2221110001    1112246799999999 56666655999


Q ss_pred             EEEEecCC
Q psy4577         322 ICLWDINA  329 (384)
Q Consensus       322 i~iwd~~~  329 (384)
                      +.-+|++.
T Consensus       208 L~~fD~~~  215 (334)
T 2p9w_A          208 LTAFDVSK  215 (334)
T ss_dssp             EEEEECSS
T ss_pred             EEEEcCCC
Confidence            99999884

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.13  E-value=0.025  Score=48.45  Aligned_cols=60  Identities=8%  Similarity=0.080  Sum_probs=37.4

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577         259 VIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       259 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                      .+++++.||.|+.||..        ++..  +..+..  +.+.+..+.+++ .++++++.||.|+.||.++++
T Consensus        11 ~v~~gs~dg~v~a~d~~--------tG~~--~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~   70 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKR--------TGSI--KWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNE   70 (369)
T ss_dssp             EEEEEETTSEEEEEETT--------TCCE--EEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----C
T ss_pred             EEEEEcCCCEEEEEECC--------CCCE--EEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCc
Confidence            78888999999999986        4543  334443  445555556676 688888999999999998876

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.90  E-value=2.3  Score=39.13  Aligned_cols=74  Identities=8%  Similarity=-0.011  Sum_probs=46.7

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      ..++|++++++++++.+-...+.|..+|+.         +..... ...+.-....+|++..+  .++.|-...+.|...
T Consensus       172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~d---------G~~~~~-~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~  239 (619)
T 3s94_A          172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLD---------GTNRQA-VVKGSLPHPFALTLFED--ILYWTDWSTHSILAC  239 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTCCEEEESSS---------CCEEC----------CCCEEESSS--EEEEECTTTCSEEEE
T ss_pred             CCcEEEEEccCCEEEEEeCCCCeEEEecCC---------CCccEE-EEeCCCCCceEEEEeCC--EEEEecCCCCEEEEE
Confidence            467899999776677777777889998884         322211 11111222356777655  466676677899999


Q ss_pred             ecCCCC
Q psy4577         326 DINATP  331 (384)
Q Consensus       326 d~~~~~  331 (384)
                      |..+++
T Consensus       240 d~~tg~  245 (619)
T 3s94_A          240 NKYTGE  245 (619)
T ss_dssp             ESSSCC
T ss_pred             ECCCCc
Confidence            987775

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=94.79  E-value=2.9  Score=39.80  Aligned_cols=93  Identities=6%  Similarity=-0.102  Sum_probs=54.5

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee----cCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL----RGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      ..|.++...+++. +.+. +.+ -+.+||..        .+........    .-....|.++...++| .+.+.. . +
T Consensus       452 ~~v~~i~~d~~g~-lwig-t~~-Gl~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigt-~-~  517 (795)
T 4a2l_A          452 ENVYAILPDGEGN-LWLG-TLS-ALVRFNPE--------QRSFTTIEKEKDGTPVVSKQITTLFRDSHK-RLWIGG-E-E  517 (795)
T ss_dssp             SCEEEEEECSSSC-EEEE-ESS-CEEEEETT--------TTEEEECCBCTTCCBCCCCCEEEEEECTTC-CEEEEE-S-S
T ss_pred             CeeEEEEECCCCC-EEEE-ecC-ceeEEeCC--------CCeEEEccccccccccCCceEEEEEECCCC-CEEEEe-C-C
Confidence            4578888888884 5444 344 48888864        2222221111    1123578999999998 444433 3 5


Q ss_pred             cEEEEecCCCCCCCccccceeeee-------ccCCcEeEEEEecCCC
Q psy4577         321 TICLWDINATPKENRVIDAKTIFT-------GHTAVVELELIERLTK  360 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~sp~~~  360 (384)
                      .|..||..+.+       .  .+.       .....|.++...++|.
T Consensus       518 Gl~~~~~~~~~-------~--~~~~~~~~~~l~~~~i~~i~~d~~g~  555 (795)
T 4a2l_A          518 GLSVFKQEGLD-------I--QKASILPVSNVTKLFTNCIYEASNGI  555 (795)
T ss_dssp             CEEEEEEETTE-------E--EECCCSCSCGGGGSCEEEEEECTTSC
T ss_pred             ceEEEeCCCCe-------E--EEecCCCCCCCCCCeeEEEEECCCCC
Confidence            68889887653       2  111       1334577777777666

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=94.53  E-value=1.7  Score=35.80  Aligned_cols=62  Identities=2%  Similarity=-0.018  Sum_probs=39.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeC---CCCCCeEEEee
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWN---PSLNGYLLSAS  317 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s---~~~~~~l~s~s  317 (384)
                      ....++++++| +++++....+.|.++|.         .+....+..+...-...++++|.   |++..++++.+
T Consensus       213 ~P~gi~vd~dG-~l~va~~~~~~V~~~~~---------~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          213 NIDDFAFDVEG-NLYGATHIYNSVVRIAP---------DRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             CCSSEEEBTTC-CEEEECBTTCCEEEECT---------TCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCCCeEECCCC-CEEEEeCCCCeEEEECC---------CCCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            35678899999 47777777889999986         33322222233233468899998   88633444433

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=94.44  E-value=0.17  Score=47.29  Aligned_cols=53  Identities=13%  Similarity=0.063  Sum_probs=37.5

Q ss_pred             CCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577          17 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV   85 (384)
Q Consensus        17 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~   85 (384)
                      +|.|+.||+.+              .+++..+..+. ++..-.+...+. +++.++.|+.++.||..++
T Consensus       454 ~g~l~A~D~~t--------------G~~~W~~~~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG  506 (689)
T 1yiq_A          454 SGKLIAWDPVK--------------QQAAWEVPYVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADTG  506 (689)
T ss_dssp             EEEEEEEETTT--------------TEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTC
T ss_pred             ceeEEEEECCC--------------CCeEeEccCCC-CccCccceECCC-EEEEECCCCcEEEEECCCC
Confidence            36788888876              35555444433 344446666777 7889999999999999987

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.11  E-value=0.39  Score=41.27  Aligned_cols=81  Identities=12%  Similarity=0.188  Sum_probs=49.6

Q ss_pred             CCceEEEEEcCCCCc--EEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEE--eeCC
Q psy4577         244 EGEVNRARYMPQNPC--VIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLS--ASDD  319 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s--~s~D  319 (384)
                      ..+|..+.|+|-+.+  .|++-..|+.||+||+......+..-........+......|.+++|..++ -.|..  .+..
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~-lTLYvl~~t~~  202 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDG-LTLYCLNTTEG  202 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTS-SCEEEEECTTS
T ss_pred             CCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCC-cEEEEEecCCC
Confidence            577999999996532  677778999999999974221110000000011222233578899999976 55555  4477


Q ss_pred             CcEEEE
Q psy4577         320 HTICLW  325 (384)
Q Consensus       320 g~i~iw  325 (384)
                      |.|+-.
T Consensus       203 GDIYAl  208 (452)
T 3pbp_A          203 GDIFAF  208 (452)
T ss_dssp             CEEEEE
T ss_pred             CCEEEE
Confidence            777643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=93.87  E-value=1  Score=39.35  Aligned_cols=101  Identities=9%  Similarity=0.078  Sum_probs=59.7

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCC----cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC-CCCCeEEEee
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSS----DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP-SLNGYLLSAS  317 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~-~~~~~l~s~s  317 (384)
                      .......|+|++++..++++...++    .+.+++.         .+.......+.. ......++++| +| .++++-.
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~---------~g~~~~~~~l~~-~~~p~giavdp~~g-~lyv~d~  245 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR---------ESGFKVITELTK-GQNCNGAETHPING-ELYFNSW  245 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG---------GGTSCSEEEEEE-CSSCCCEEECTTTC-CEEEEET
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC---------CCceeeeeeecc-CCCceEEEEeCCCC-EEEEEEC
Confidence            3456789999999964666554333    2334443         222221122221 23456889999 66 6777766


Q ss_pred             CCCcEEEEecCCCCCCCccccceeeee-ccCCcEeEEEEecCCCc
Q psy4577         318 DDHTICLWDINATPKENRVIDAKTIFT-GHTAVVELELIERLTKK  361 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~  361 (384)
                      .++.|+.++..+..       ...... +....-+.++|+|+++.
T Consensus       246 ~~~~V~~~~~~~~~-------~~~~~~~~~~~~P~gia~~pdG~~  283 (430)
T 3tc9_A          246 NAGQVFRYDFTTQE-------TTPLFTIQDSGWEFHIQFHPSGNY  283 (430)
T ss_dssp             TTTEEEEEETTTTE-------EEEEEECSSSSCCEEEEECTTSSE
T ss_pred             CCCEEEEEECCCCc-------EEEEEEcCCCCcceeEEEcCCCCE
Confidence            78899999998653       211111 11234568999999983

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=93.60  E-value=0.31  Score=45.47  Aligned_cols=52  Identities=13%  Similarity=0.144  Sum_probs=37.2

Q ss_pred             CeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccC
Q psy4577          18 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCV   85 (384)
Q Consensus        18 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~   85 (384)
                      +.|..||+.+              .+.+.... +..++.+..+...+. +++.++.|+.+++||..++
T Consensus       457 g~l~A~D~~t--------------G~~~W~~~-~~~~~~~g~~~~~g~-~v~~g~~dg~l~a~D~~tG  508 (677)
T 1kb0_A          457 GRLLAWDPVA--------------QKAAWSVE-HVSPWNGGTLTTAGN-VVFQGTADGRLVAYHAATG  508 (677)
T ss_dssp             EEEEEEETTT--------------TEEEEEEE-ESSSCCCCEEEETTT-EEEEECTTSEEEEEETTTC
T ss_pred             cEEEEEeCCC--------------CcEEeecC-CCCCCcCcceEeCCC-EEEEECCCCcEEEEECCCC
Confidence            6788888876              24444433 233455666777777 7778899999999999987

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.43  E-value=0.42  Score=37.03  Aligned_cols=99  Identities=8%  Similarity=-0.038  Sum_probs=55.5

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCc--------eEEEEeCCCCCCeEEEee
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE--------GYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~--------i~~~~~s~~~~~~l~s~s  317 (384)
                      .+..++|+|++. +.+.  .+|.++-.+..        +....   .+.+-...        -.++.|.|+| .+.++  
T Consensus        42 ~~~~laf~P~G~-LYaV--~~G~Ly~~~~~--------t~~~~---~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav--  104 (236)
T 1tl2_A           42 NFKFLFLSPGGE-LYGV--LNDKIYKGTPP--------THDND---NWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV--  104 (236)
T ss_dssp             TCSEEEECTTSC-EEEE--ETTEEEEESCC--------CSTTC---CHHHHCEEEECSCGGGCSEEEECTTS-CEEEE--
T ss_pred             cceeEEECCCcc-EEEE--eCCeEEEECCC--------CCCcc---cccccccEecccccccceEEEECCCC-CEEEe--
Confidence            577999999885 7776  56765554432        11100   11111112        3789999998 56666  


Q ss_pred             CCCcEEEEecCCCCCCCccccceeee-eccCCcEeEEEEecCCCcc
Q psy4577         318 DDHTICLWDINATPKENRVIDAKTIF-TGHTAVVELELIERLTKKA  362 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~  362 (384)
                      .||.|+-++-.+... ..++..-.++ .+-=..+..|.|.|+|..-
T Consensus       105 ~dG~iyr~~pP~~~~-~~Wl~~a~~vg~~gw~~~~~lff~p~G~Ly  149 (236)
T 1tl2_A          105 SKDKLYKASPPQSDT-DNWIARATEVGSGGWSGFKFLFFHPNGYLY  149 (236)
T ss_dssp             ETTEEEEESCCCSTT-CCHHHHSEEEECSSGGGEEEEEECTTSCEE
T ss_pred             CCCEEEEeCCCcCCC-CceeccccEeccCCCCceEEEEECCCceEE
Confidence            679998887654321 1222111111 1111357888888888753

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=93.33  E-value=4.9  Score=37.04  Aligned_cols=75  Identities=9%  Similarity=-0.041  Sum_probs=51.7

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      -...++|++++++.+++.+-...+.|..+|+.         +....  .+...-....+|++.. + .++.|-...+.|.
T Consensus       165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d---------G~~~~--v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~  231 (628)
T 4a0p_A          165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNML---------GLNRE--VIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIE  231 (628)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSCE--EEEECCSCEEEEEEET-T-EEEEEETTTTEEE
T ss_pred             CCCcceEEEccccCEEEEEECCCCEEEEEcCC---------CCceE--EeeccCCCceEEEEEC-C-EEEEecCCCCEEE
Confidence            35678999999876677777778899999984         32221  2222333456788765 3 5666766789999


Q ss_pred             EEecCCCC
Q psy4577         324 LWDINATP  331 (384)
Q Consensus       324 iwd~~~~~  331 (384)
                      ..|..+++
T Consensus       232 ~~dk~tg~  239 (628)
T 4a0p_A          232 RANKTSGQ  239 (628)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCC
Confidence            99987775

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=93.31  E-value=2.2  Score=35.28  Aligned_cols=105  Identities=10%  Similarity=-0.009  Sum_probs=62.3

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      .....+++|++.+..++.+-..++.|+.+++....     .+.. ....+...-.....+++.+.+.+++++-...+.|.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~-----~~~~-~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~  102 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH-----GVSS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS  102 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCC-----CCcc-cEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEE
Confidence            44578999998765688887778999999985200     0011 11122222234578888875425666667788999


Q ss_pred             EEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577         324 LWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK  361 (384)
Q Consensus       324 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  361 (384)
                      +.+.....       ....+........+++..|.+..
T Consensus       103 ~~~~~g~~-------~~~~~~~~~~~P~~iavdp~~g~  133 (316)
T 1ijq_A          103 VADTKGVK-------RKTLFRENGSKPRAIVVDPVHGF  133 (316)
T ss_dssp             EEETTSSS-------EEEEEECTTCCEEEEEEETTTTE
T ss_pred             EEeCCCCc-------eEEEEECCCCCcceEEeCCCCCE
Confidence            99987543       22222222234567777776553

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=93.13  E-value=6.1  Score=37.58  Aligned_cols=97  Identities=6%  Similarity=-0.080  Sum_probs=59.6

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec------CCCCceEEEEeCCCCCCeEEEeeC
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR------GHQKEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      ..|.++...++|. +. .|+.++-|..|+..        .+.......-.      -....|.++...++| .+|-.|+.
T Consensus       357 ~~V~~i~~d~~g~-lW-iGt~~~Gl~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~  425 (795)
T 4a2l_A          357 NVVSCIVEDKDKN-LW-IGTNDGGLNLYNPI--------TQRFTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYIGTH  425 (795)
T ss_dssp             SSEEEEEECTTSC-EE-EEESSSCEEEECTT--------TCCEEEECCC------CCSCSCEEEEEEETTT-TEEEEEET
T ss_pred             CeeEEEEECCCCC-EE-EEECCCCeEEEcCC--------CCcEEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEEEeC
Confidence            4588898888884 44 46777778999875        22222111000      123578999998887 53566777


Q ss_pred             CCcEEEEecCCCCCCCccccceeeee-----ccCCcEeEEEEecCCC
Q psy4577         319 DHTICLWDINATPKENRVIDAKTIFT-----GHTAVVELELIERLTK  360 (384)
Q Consensus       319 Dg~i~iwd~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~sp~~~  360 (384)
                      ++-|..||.++++       . ..+.     .+...|.++...+++.
T Consensus       426 ~~Gl~~~d~~~~~-------~-~~~~~~~~~l~~~~v~~i~~d~~g~  464 (795)
T 4a2l_A          426 AGGLSILHRNSGQ-------V-ENFNQRNSQLVNENVYAILPDGEGN  464 (795)
T ss_dssp             TTEEEEEETTTCC-------E-EEECTTTSCCSCSCEEEEEECSSSC
T ss_pred             cCceeEEeCCCCc-------E-EEeecCCCCcCCCeeEEEEECCCCC
Confidence            7789999988764       1 1111     1234577777666555

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=93.10  E-value=3.8  Score=35.08  Aligned_cols=77  Identities=10%  Similarity=0.005  Sum_probs=50.9

Q ss_pred             CceEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPS-SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      .....++++|.+..++.+-..+ +.|..+++.         +..... .....-...+.|+|+|++.+++++-+..+.|.
T Consensus       202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~d---------G~~~~~-~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~  271 (386)
T 3v65_B          202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD---------GSGRRI-IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  271 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCSCEE-EECSSCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC---------CCCcEE-EEECCCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence            4568999999776677765555 778888873         332221 22222345789999987635556666678899


Q ss_pred             EEecCCCC
Q psy4577         324 LWDINATP  331 (384)
Q Consensus       324 iwd~~~~~  331 (384)
                      .+|+....
T Consensus       272 ~~d~dG~~  279 (386)
T 3v65_B          272 RANLDGSH  279 (386)
T ss_dssp             EECTTSCS
T ss_pred             EEeCCCCe
Confidence            99987543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=92.50  E-value=3.8  Score=35.29  Aligned_cols=105  Identities=10%  Similarity=0.028  Sum_probs=63.0

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      ....+..++|++.+..++.+-..++.|+.+++....      ........+...-.....+++.+.+.+++++-...+.|
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~------~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I  183 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH------GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV  183 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCC------CCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeE
Confidence            445678999998765677776778889999874210      00111222222334577899987442566676678899


Q ss_pred             EEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577         323 CLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK  360 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  360 (384)
                      .+.++....       ....+.........++..|.+.
T Consensus       184 ~~~~~~g~~-------~~~l~~~~~~~P~~iavdp~~g  214 (400)
T 3p5b_L          184 SVADTKGVK-------RKTLFRENGSKPRAIVVDPVHG  214 (400)
T ss_dssp             EEECTTTCS-------EEEEEECSSCCEEEEEEETTTT
T ss_pred             EEEeCCCCc-------eEEEEeCCCCCcceEEEecccC
Confidence            999987654       2222222223356677766544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=92.49  E-value=4  Score=33.82  Aligned_cols=75  Identities=9%  Similarity=-0.018  Sum_probs=47.2

Q ss_pred             ceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         246 EVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      ....+++.|.+..++.+-. ..+.|...++.         +..... .+...-..-+.|+++|++.+++.+=+..+.|..
T Consensus       123 ~P~giavdp~~g~ly~td~~~~~~I~r~~~d---------G~~~~~-~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~  192 (318)
T 3sov_A          123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMD---------GSSRFI-IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK  192 (318)
T ss_dssp             SEEEEEEEGGGTEEEEEECSSSCEEEEEETT---------SCSCEE-EECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CccEEEEeCCCCEEEEEecCCCCEEEEEEcC---------CCCeEE-EEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence            4578889986545666542 35778888773         332221 122222356899999976345555556789999


Q ss_pred             EecCCC
Q psy4577         325 WDINAT  330 (384)
Q Consensus       325 wd~~~~  330 (384)
                      +|+...
T Consensus       193 ~d~dG~  198 (318)
T 3sov_A          193 SNLDGT  198 (318)
T ss_dssp             EETTSC
T ss_pred             EcCCCC
Confidence            998754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=92.03  E-value=8.4  Score=36.53  Aligned_cols=75  Identities=4%  Similarity=-0.084  Sum_probs=46.2

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ...|.++...+++. +.+ |+.++-|..+|..        .+..............|.++...++| .+.+ |.. +-|.
T Consensus       406 ~~~v~~i~~d~~g~-lWi-gt~~~Gl~~~~~~--------~~~~~~~~~~~~~~~~v~~i~~d~~g-~lwi-gt~-~Gl~  472 (781)
T 3v9f_A          406 SNSVLCSLKDSEGN-LWF-GTYLGNISYYNTR--------LKKFQIIELEKNELLDVRVFYEDKNK-KIWI-GTH-AGVF  472 (781)
T ss_dssp             CSBEEEEEECTTSC-EEE-EETTEEEEEECSS--------SCEEEECCSTTTCCCCEEEEEECTTS-EEEE-EET-TEEE
T ss_pred             CcceEEEEECCCCC-EEE-EeccCCEEEEcCC--------CCcEEEeccCCCCCCeEEEEEECCCC-CEEE-EEC-CceE
Confidence            35688888888774 444 5666678888864        23222111001134579999999887 4443 334 5688


Q ss_pred             EEecCCCC
Q psy4577         324 LWDINATP  331 (384)
Q Consensus       324 iwd~~~~~  331 (384)
                      .+|..+++
T Consensus       473 ~~~~~~~~  480 (781)
T 3v9f_A          473 VIDLASKK  480 (781)
T ss_dssp             EEESSSSS
T ss_pred             EEeCCCCe
Confidence            99987754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=91.95  E-value=5.9  Score=34.53  Aligned_cols=75  Identities=13%  Similarity=0.246  Sum_probs=48.1

Q ss_pred             CceEEEEEcC-CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc-cceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         245 GEVNRARYMP-QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC-HPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       245 ~~v~~v~~~p-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      .....++++| ++ +++++-..++.|+.+|..        .+.. ..+... +....-..++|+|++..++++-...++|
T Consensus       228 ~~P~giavd~~~G-~lyv~d~~~~~V~~~d~~--------~g~~~~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          228 RGAKTCAVHPQNG-KIYYTRYHHAMISSYDPA--------TGTLTEEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             SSBCCCEECTTTC-CEEECBTTCSEEEEECTT--------TCCEEEEEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCCCEEEEeCCCC-eEEEEECCCCEEEEEECC--------CCeEEEEEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            3456788899 56 577776677889988874        2332 111111 1222345799999983256666677899


Q ss_pred             EEEecCC
Q psy4577         323 CLWDINA  329 (384)
Q Consensus       323 ~iwd~~~  329 (384)
                      +.++...
T Consensus       298 ~~~~~d~  304 (433)
T 4hw6_A          298 YRVDYNR  304 (433)
T ss_dssp             EEEEBCT
T ss_pred             EEEeCCC
Confidence            9988763

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.56  E-value=4.7  Score=33.87  Aligned_cols=112  Identities=7%  Similarity=-0.085  Sum_probs=63.3

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee----cCCCCceEEEEeCCC----CCCeEEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL----RGHQKEGYGLSWNPS----LNGYLLS  315 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~h~~~i~~~~~s~~----~~~~l~s  315 (384)
                      -.....++|.|+|. ++++--..|.|++++..        .+...++..+    .........|+++|+    + .+.++
T Consensus        31 L~~P~~ia~~pdG~-llVter~~G~I~~v~~~--------~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g-~lYv~  100 (347)
T 3das_A           31 LNSPWGLAPLPGGD-LLVSSRDEATITRVDAK--------TGRKTELGEVPGVSPSGEGGLLGIALSPDYASDH-MVYAY  100 (347)
T ss_dssp             CSSEEEEEECTTSC-EEEEETTTCEEEEECTT--------TCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHC-EEEEE
T ss_pred             CCCceEEEEcCCCc-EEEEEecCCEEEEEECC--------CCcEeeecccCceeecCCCCceeeEeccccccCC-EEEEE
Confidence            45678999999995 88775558999988753        2332222222    223456899999995    4 34443


Q ss_pred             e--eCCCcEEEEecCCCCC----CCccccceeeee-ccCCcEeEEEEecCCCccccc
Q psy4577         316 A--SDDHTICLWDINATPK----ENRVIDAKTIFT-GHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       316 ~--s~Dg~i~iwd~~~~~~----~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      -  ..++.|.-|.......    .......+..+. +....-..|+|.|||....++
T Consensus       101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~  157 (347)
T 3das_A          101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT  157 (347)
T ss_dssp             EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC
T ss_pred             EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE
Confidence            2  3456677776665210    001001111222 112234679999999754443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=91.54  E-value=3.4  Score=39.25  Aligned_cols=105  Identities=10%  Similarity=0.008  Sum_probs=63.4

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      ....+.+|+|++....++.+-...+.|+.+++.....      .......+...-.....|++.+.+.+++++-...++|
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~------~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I  495 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV  495 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCC------CcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeE
Confidence            3456778999986656777777788899988842100      0111222332334567888887763566676778999


Q ss_pred             EEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577         323 CLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK  360 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  360 (384)
                      .+.++....       ....+.........|++.|.+.
T Consensus       496 ~v~~ldG~~-------~~~l~~~~l~~P~gIaVDp~~g  526 (791)
T 3m0c_C          496 SVADTKGVK-------RKTLFRENGSKPRAIVVDPVHG  526 (791)
T ss_dssp             EEEETTSSS-------EEEEEECTTCCEEEEEEETTTT
T ss_pred             EEEeCCCCe-------EEEEEeCCCCCcceEEEecCCC
Confidence            999998653       2222222333466777777644

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.51  E-value=3.3  Score=36.37  Aligned_cols=113  Identities=12%  Similarity=0.132  Sum_probs=61.6

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC------CCCceEEEEeCCC---CCCeEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG------HQKEGYGLSWNPS---LNGYLL  314 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------h~~~i~~~~~s~~---~~~~l~  314 (384)
                      -....+++|.|+|. ++++-...+.|++++..        .+....+..+..      .......|+|+|+   +..+.+
T Consensus        26 l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~--------~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           26 LNKPHALLWGPDNQ-IWLTERATGKILRVNPE--------SGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             CSSEEEEEECTTSC-EEEEETTTCEEEEECTT--------TCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             CCCceEEEEcCCCc-EEEEEcCCCEEEEEECC--------CCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence            34567999999995 77775444568887653        233333333321      2456789999994   324555


Q ss_pred             EeeC------------CCcEEEEecCCCCCC-Cccccceeeee-ccCCcEeEEEEecCCCccccc
Q psy4577         315 SASD------------DHTICLWDINATPKE-NRVIDAKTIFT-GHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       315 s~s~------------Dg~i~iwd~~~~~~~-~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      +-+.            ...|.-++....... ......+..+. +....-..++|.|||....+.
T Consensus        97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~  161 (454)
T 1cru_A           97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI  161 (454)
T ss_dssp             EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred             EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence            5443            235666665432100 00000111122 112347889999999755544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=91.36  E-value=5.9  Score=33.36  Aligned_cols=71  Identities=4%  Similarity=-0.174  Sum_probs=40.2

Q ss_pred             ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccc
Q psy4577         289 PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKAD  363 (384)
Q Consensus       289 ~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~  363 (384)
                      |...+..| .....++| .+| .++++.-..+.|...++.......+ ......+..-...+.++++.|||....
T Consensus       260 p~~~~~~~-~ap~G~~~-~~G-~l~v~~~~~~~v~~v~~~~~~~~~~-~~~~~~~~~~~~rp~~v~~~pdG~lyv  330 (352)
T 2ism_A          260 PLYFWPQG-FPPGNLAF-FRG-DLYVAGLRGQALLRLVLEGERGRWR-VLRVETALSGFGRLREVQVGPDGALYV  330 (352)
T ss_dssp             CSEECTTC-CCEEEEEE-ETT-EEEEEETTTTEEEEEEEEEETTEEE-EEEEEEEEESSCCEEEEEECTTSCEEE
T ss_pred             CeEecCCC-CCCcceEE-ECC-EEEEEECCCCEEEEEEECCCCccee-ecchheecccCCCeeEEEECCCCcEEE
Confidence            44455333 34567888 466 5777666677888888765431000 000112212235789999999996443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.29  E-value=2.7  Score=35.52  Aligned_cols=110  Identities=8%  Similarity=-0.065  Sum_probs=62.0

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec---CCCCceEEEEeCCC---CCCeEEEee
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR---GHQKEGYGLSWNPS---LNGYLLSAS  317 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~s~~---~~~~l~s~s  317 (384)
                      -.....++|.|++. ++++ ..+|.|++++.         .+. ..+..+.   ........|+++|+   +..++++-+
T Consensus        28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d~---------~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLISP---------SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEE-ETTTEEEEECS---------SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCCCeEEEEcCCCe-EEEE-eCCCEEEEEeC---------CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence            34568999999994 6666 55699998873         343 3332221   22346889999997   324555544


Q ss_pred             C---C----CcEEEEecCCCCCCCccccce-eeeec-cCCcEeEEEEecCCCccccc
Q psy4577         318 D---D----HTICLWDINATPKENRVIDAK-TIFTG-HTAVVELELIERLTKKADPV  365 (384)
Q Consensus       318 ~---D----g~i~iwd~~~~~~~~~~~~~~-~~~~~-h~~~v~~~~~sp~~~~~~~~  365 (384)
                      .   +    ..|..|+.......-.....+ ..+.. ....-..++|.|||....+.
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            2   3    578888876541000000011 11221 11234679999999755443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=90.91  E-value=6.6  Score=33.15  Aligned_cols=60  Identities=8%  Similarity=-0.080  Sum_probs=35.5

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEeccc---------ccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH---------TAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh---------~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      .|.+++.++.|..+|..+.              +.+......         ...+.+.-.. ++. .++.++.|+.|..+
T Consensus        55 ~v~~~~~~g~v~a~d~~tG--------------~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~v~~~~g~l~a~  118 (376)
T 3q7m_A           55 VVYAADRAGLVKALNADDG--------------KEIWSVSLAEKDGWFSKEPALLSGGVTV-SGG-HVYIGSEKAQVYAL  118 (376)
T ss_dssp             EEEEECTTSEEEEEETTTC--------------CEEEEEECCC---CCSCCCCCEEEEEEE-ETT-EEEEEETTSEEEEE
T ss_pred             EEEEEcCCCeEEEEEccCC--------------ceeeeecCccccccccccCcccccCceE-eCC-EEEEEcCCCEEEEE
Confidence            4677777889999998752              222221111         1123222212 233 45678889999999


Q ss_pred             EcccC
Q psy4577          81 SVVCV   85 (384)
Q Consensus        81 d~~~~   85 (384)
                      |..++
T Consensus       119 d~~tG  123 (376)
T 3q7m_A          119 NTSDG  123 (376)
T ss_dssp             ETTTC
T ss_pred             ECCCC
Confidence            99876

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=90.30  E-value=3.7  Score=34.60  Aligned_cols=107  Identities=7%  Similarity=-0.091  Sum_probs=60.6

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee---cCCCCceEEEEeCCC---CCCeEEEeeC
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL---RGHQKEGYGLSWNPS---LNGYLLSASD  318 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~h~~~i~~~~~s~~---~~~~l~s~s~  318 (384)
                      .....++|.|+|. ++++ ..+|.|++++ .         +....+..+   .........|+|+|+   +..++++-..
T Consensus        31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~-~---------g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~   98 (352)
T 2ism_A           31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR-E---------GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTV   98 (352)
T ss_dssp             SCEEEEEECTTSC-EEEE-ETTTEEEEEE-T---------TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CCceEEEEcCCCe-EEEE-eCCCeEEEEE-C---------CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence            4567999999995 6666 5569999987 2         222222222   122346789999998   4245555443


Q ss_pred             C-----CcEEEEecCCCCCCCccccceeeee---ccCCcEeEEEEecCCCcccc
Q psy4577         319 D-----HTICLWDINATPKENRVIDAKTIFT---GHTAVVELELIERLTKKADP  364 (384)
Q Consensus       319 D-----g~i~iwd~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~sp~~~~~~~  364 (384)
                      +     +.|..++....... ..-..+..+.   +....-..++|.|+|....+
T Consensus        99 ~~~~~~~~v~r~~~~~~~~~-~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~  151 (352)
T 2ism_A           99 AEGGLRNQVVRLRHLGERGV-LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT  151 (352)
T ss_dssp             CTTSSEEEEEEEEECSSCEE-EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred             CCCCCccEEEEEEeCCCCcC-ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence            3     67888887743200 0000111122   11122368999999964444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=88.49  E-value=10  Score=31.82  Aligned_cols=82  Identities=12%  Similarity=0.155  Sum_probs=46.7

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec-CC-CCceEEEEe--CCCCCCeEEEee-C
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR-GH-QKEGYGLSW--NPSLNGYLLSAS-D  318 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~h-~~~i~~~~~--s~~~~~~l~s~s-~  318 (384)
                      ...+..+...+... .|..+-++.-|..++.....     ......+..+. ++ ...+..|+.  .+++..+|+.++ .
T Consensus       179 gsq~EgcvvDd~~g-~Lyv~eEd~GIw~~da~p~~-----~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG  252 (355)
T 3amr_A          179 NSQTEGMAADDEYG-RLYIAEEDEAIWKFSAEPDG-----GSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG  252 (355)
T ss_dssp             SSCEEEEEEETTTT-EEEEEETTTEEEEEECSTTS-----CSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             CCCcceEEEcCCCC-eEEEecccceEEEEeCCcCC-----CCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence            44677888888775 66677777555445543210     11112222221 22 236777777  566532555544 6


Q ss_pred             CCcEEEEecC-CCC
Q psy4577         319 DHTICLWDIN-ATP  331 (384)
Q Consensus       319 Dg~i~iwd~~-~~~  331 (384)
                      +.+..+||.+ +.+
T Consensus       253 ~~s~~Vydr~~~~~  266 (355)
T 3amr_A          253 NSSYAIYDRQGKNK  266 (355)
T ss_dssp             GTEEEEEESSTTCC
T ss_pred             CCEEEEEECCCCCc
Confidence            7899999997 444

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=88.10  E-value=4.6  Score=33.51  Aligned_cols=104  Identities=8%  Similarity=-0.030  Sum_probs=61.3

Q ss_pred             eEEEEE---cCCCCcEEEEEe-------------CCCcEEEEecCCCCCCCCCCCCccceeeecCC----------C-Cc
Q psy4577         247 VNRARY---MPQNPCVIATKT-------------PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGH----------Q-KE  299 (384)
Q Consensus       247 v~~v~~---~p~~~~~l~s~s-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h----------~-~~  299 (384)
                      +.+|.+   .|++ .++++..             .+..+..||+....     ++.......+...          . ..
T Consensus        65 ~sGl~~~~~D~~g-rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~-----tg~~~~~~dL~~~~~~~~~~~g~~~~~  138 (334)
T 2p9w_A           65 MSGLSLLTHDNSK-RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSE-----NSKPVWSVNFEKVQDEFEKKAGKRPFG  138 (334)
T ss_dssp             EEEEEESSSSSCC-EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCT-----TCCCSEEEESHHHHHHHHHHHSSCCEE
T ss_pred             eeEEEEeccCCCC-cEEEEEcccccccccccccCCCCEEEEEcCCcCC-----CCCEEEEecCccccccccccccccccC
Confidence            368888   6876 4766533             25778899985100     1222222222211          1 24


Q ss_pred             eEEEEeCCCCCCeEEEeeCC-CcEEEEecCCCCCCCccccceeeee------ccCCcEeEEEEecCCCccccc
Q psy4577         300 GYGLSWNPSLNGYLLSASDD-HTICLWDINATPKENRVIDAKTIFT------GHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       300 i~~~~~s~~~~~~l~s~s~D-g~i~iwd~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      ...++..++| +..++++.- +.|...+.....        +..+.      ......+.++++|++..+...
T Consensus       139 ~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~~--------~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~  202 (334)
T 2p9w_A          139 VVQSAQDRDG-NSYVAFALGMPAIARVSADGKT--------VSTFAWESGNGGQRPGYSGITFDPHSNKLIAF  202 (334)
T ss_dssp             EEEEEECTTS-CEEEEEEESSCEEEEECTTSCC--------EEEEEECCCCSSSCCSCSEEEEETTTTEEEEE
T ss_pred             CceeEECCCC-CEEEeCCCCCCeEEEEeCCCCE--------EeeeeecCCCcccccCcceEEEeCCCCEEEEE
Confidence            7899999999 788888887 777666665432        11111      112236788999999755544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=87.12  E-value=21  Score=33.86  Aligned_cols=75  Identities=8%  Similarity=-0.033  Sum_probs=44.3

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ..|.++...++|. +.+ |+.++-+..||..        .+.........+ ....|.++...++| .+.++. .+|-|.
T Consensus       495 ~~i~~i~~d~~g~-lWi-gt~~~Gl~~~~~~--------~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWi~T-~~Glv~  562 (781)
T 3v9f_A          495 NFVRSIAQDSEGR-FWI-GTFGGGVGIYTPD--------MQLVRKFNQYEGFCSNTINQIYRSSKG-QMWLAT-GEGLVC  562 (781)
T ss_dssp             SCEEEEEECTTCC-EEE-EESSSCEEEECTT--------CCEEEEECTTTTCSCSCEEEEEECTTS-CEEEEE-TTEEEE
T ss_pred             ceeEEEEEcCCCC-EEE-EEcCCCEEEEeCC--------CCeEEEccCCCCCCCCeeEEEEECCCC-CEEEEE-CCCceE
Confidence            5688999999885 544 3443447778764        222111111011 23478999999988 444443 366558


Q ss_pred             EEecCCCC
Q psy4577         324 LWDINATP  331 (384)
Q Consensus       324 iwd~~~~~  331 (384)
                      .||..+.+
T Consensus       563 ~~d~~~~~  570 (781)
T 3v9f_A          563 FPSARNFD  570 (781)
T ss_dssp             ESCTTTCC
T ss_pred             EECCCCCc
Confidence            88887653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=86.97  E-value=2.4  Score=39.33  Aligned_cols=72  Identities=14%  Similarity=0.115  Sum_probs=48.5

Q ss_pred             EEEEcC-CCCcEEEEEeCCC-----------cEEEEecCCCCCCCCCCCCccceeeecC-CCCceEEEEeCCCCCCeEEE
Q psy4577         249 RARYMP-QNPCVIATKTPSS-----------DVLVFDYTKHPSKPDPNGECHPDLRLRG-HQKEGYGLSWNPSLNGYLLS  315 (384)
Q Consensus       249 ~v~~~p-~~~~~l~s~s~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~s~~~~~~l~s  315 (384)
                      .+++.| ++ .+++.|+.+.           .+.+||..        ++....+..+.. +.....++++.+++ .+++.
T Consensus       190 ~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~--------t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~  259 (656)
T 1k3i_A          190 AAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPS--------TGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVT  259 (656)
T ss_dssp             EEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTT--------TCCBCCCEEEECSCCCSSCEEEECTTS-CEEEE
T ss_pred             eEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCC--------CCcEEeCcccCCCCCCccccccCCCCC-CEEEe
Confidence            566677 67 4888877543           57889886        444444433322 33345567888888 78888


Q ss_pred             eeC-CCcEEEEecCCC
Q psy4577         316 ASD-DHTICLWDINAT  330 (384)
Q Consensus       316 ~s~-Dg~i~iwd~~~~  330 (384)
                      |+. +..+.+||..+.
T Consensus       260 GG~~~~~v~~yd~~t~  275 (656)
T 1k3i_A          260 GGNDAKKTSLYDSSSD  275 (656)
T ss_dssp             CSSSTTCEEEEEGGGT
T ss_pred             CCCCCCceEEecCcCC
Confidence            884 568999998765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=86.83  E-value=7.1  Score=34.60  Aligned_cols=107  Identities=8%  Similarity=0.056  Sum_probs=59.2

Q ss_pred             ceEEEEE-------cCCCCcEEEEEeCCCc------EEEEecCCCCCCCCCCCCccc---eeeecCCCCceEEEEeCCCC
Q psy4577         246 EVNRARY-------MPQNPCVIATKTPSSD------VLVFDYTKHPSKPDPNGECHP---DLRLRGHQKEGYGLSWNPSL  309 (384)
Q Consensus       246 ~v~~v~~-------~p~~~~~l~s~s~dg~------i~iwd~~~~~~~~~~~~~~~~---~~~~~~h~~~i~~~~~s~~~  309 (384)
                      ....|+|       ++++..++++-..++.      |.+++...       .+....   ...+... .....++.+|++
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~-------~G~~~~~~~~~~v~~~-~~p~giavdp~~  258 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNA-------DGTFDDRSDIQLIAAY-KQCNGATIHPIN  258 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCT-------TSCCSTTSCEEEEEEE-SCCCCEEECTTT
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCC-------CCceeecccceeeccC-CCceEEEEcCCC
Confidence            5789999       9999645555444322      66666321       112210   0112111 234578899954


Q ss_pred             CCeEEEeeCCCcEEEEecC-------CCCCCCc---c----ccceeeeeccCCcEeEEEEecCCCc
Q psy4577         310 NGYLLSASDDHTICLWDIN-------ATPKENR---V----IDAKTIFTGHTAVVELELIERLTKK  361 (384)
Q Consensus       310 ~~~l~s~s~Dg~i~iwd~~-------~~~~~~~---~----~~~~~~~~~h~~~v~~~~~sp~~~~  361 (384)
                      ..++++-..++.|+.+|+.       ++....+   .    ...+... +....-+.++|+|+++.
T Consensus       259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~  323 (496)
T 3kya_A          259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKY  323 (496)
T ss_dssp             CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSE
T ss_pred             CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCE
Confidence            3567777788899999997       4431000   0    0011111 12344578999999983

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=85.77  E-value=1.4  Score=41.27  Aligned_cols=81  Identities=9%  Similarity=-0.050  Sum_probs=48.3

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      ..+.+|+|++.+..++++-...+.|+.+++.....     +.. ....+...-.....|++.+.+.+++++-...+.|.+
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~-----~~~-~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v  479 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----VSS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  479 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC------CC-CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEE
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCC-----Ccc-eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEE
Confidence            45678899987655666666678999998852100     011 111111111234578888654356666667789999


Q ss_pred             EecCCCC
Q psy4577         325 WDINATP  331 (384)
Q Consensus       325 wd~~~~~  331 (384)
                      .++....
T Consensus       480 ~d~dg~~  486 (699)
T 1n7d_A          480 ADTKGVK  486 (699)
T ss_dssp             EBSSSCC
T ss_pred             EecCCCc
Confidence            9987653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=84.21  E-value=26  Score=32.47  Aligned_cols=75  Identities=12%  Similarity=0.092  Sum_probs=44.9

Q ss_pred             EEEEEcCCCCcEEEEEeCCC-------------------cEEEEecCCCCCCCCCCCCccceeeecCCC-------CceE
Q psy4577         248 NRARYMPQNPCVIATKTPSS-------------------DVLVFDYTKHPSKPDPNGECHPDLRLRGHQ-------KEGY  301 (384)
Q Consensus       248 ~~v~~~p~~~~~l~s~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~-------~~i~  301 (384)
                      ..++++|... ++..++.++                   .|.-+|.+        ++...-......|.       .+..
T Consensus       233 ~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~--------tG~~~W~~~~~~~~~wd~~~~~~~~  303 (668)
T 1kv9_A          233 DSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD--------TGKLAWHYQVTPGDSWDFTATQQIT  303 (668)
T ss_dssp             SCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT--------TCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             cceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC--------CCceeeEeecCCCccccccCCCCcE
Confidence            3567777664 666666555                   37777775        45433222222232       2222


Q ss_pred             EEEeCCCCC--CeEEEeeCCCcEEEEecCCCC
Q psy4577         302 GLSWNPSLN--GYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       302 ~~~~s~~~~--~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                      ......+|.  .+|+.++.+|.++++|..+++
T Consensus       304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             EEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence            222233541  268999999999999999987

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=81.96  E-value=11  Score=31.73  Aligned_cols=111  Identities=8%  Similarity=-0.026  Sum_probs=57.7

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc-cceee----ecCCCCceEEEEeCCC---CCCeEEEe
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC-HPDLR----LRGHQKEGYGLSWNPS---LNGYLLSA  316 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~----~~~h~~~i~~~~~s~~---~~~~l~s~  316 (384)
                      .....++|.|+|..++++ ...|.|++++..         +.. .++..    ..........|+++|+   +..++++-
T Consensus        18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~---------g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAG---------KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             SSEEEEEECSTTCCEEEE-ETTTEEEEEETT---------TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEE-eCCceEEEEeCC---------CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence            456899999999425554 567999998842         211 11111    1122345789999995   32455554


Q ss_pred             eC-------CCcEEEEecCCCCCCCccccc-eeeee---ccCCcEeEEEEecCCCccccc
Q psy4577         317 SD-------DHTICLWDINATPKENRVIDA-KTIFT---GHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       317 s~-------Dg~i~iwd~~~~~~~~~~~~~-~~~~~---~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      +.       ...|..|++......-..... +..+.   .....-..++|.|||....+.
T Consensus        88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred             eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence            33       235666776543110000001 11111   111123568999998644443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=80.95  E-value=28  Score=30.47  Aligned_cols=37  Identities=16%  Similarity=0.100  Sum_probs=22.8

Q ss_pred             cCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577         294 RGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       294 ~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                      .||. ....++|+|+|..+++--+.|+.-.|.-+..+.
T Consensus       225 ~G~R-Np~gla~dp~G~L~~~d~g~~~~dein~i~~G~  261 (454)
T 1cru_A          225 LGHR-NPQGLAFTPNGKLLQSEQGPNSDDEINLIVKGG  261 (454)
T ss_dssp             BCCS-EEEEEEECTTSCEEEEEECSSSCEEEEECCTTC
T ss_pred             ECCC-CcceEEECCCCCEEEEecCCCCCeEEEEecCCC
Confidence            3554 467999999874333444456666666665543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=80.34  E-value=3.5  Score=37.51  Aligned_cols=46  Identities=13%  Similarity=-0.129  Sum_probs=29.6

Q ss_pred             CeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCc-EeEEEEecCCCccc
Q psy4577         311 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAV-VELELIERLTKKAD  363 (384)
Q Consensus       311 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~sp~~~~~~  363 (384)
                      .+++.++.||.|+.||.++++       .+..+.-.... -.-+.+.++|....
T Consensus       476 g~v~~g~~dg~l~a~D~~tG~-------~lw~~~~~~~~~~~p~~~~~~G~~yv  522 (571)
T 2ad6_A          476 GLVWYATLDGYLKALDNKDGK-------ELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCC-------EEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCC-------EEEEEeCCCCcEeeeEEEEECCEEEE
Confidence            467778999999999999998       66666532111 12233556665433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (123), Expect = 4e-08
 Identities = 34/328 (10%), Positives = 87/328 (26%), Gaps = 35/328 (10%)

Query: 1   VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
           V + P   +++ S+  D  + VWD                  +      GHT  + D S+
Sbjct: 23  VIFHP-VFSVMVSASEDATIKVWDYET--------------GDFERTLKGHTDSVQDISF 67

Query: 61  NPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHAL 120
           + +   +    ++  I                 +  ++    +   +         T  +
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 121 EWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 180
                                    ++   +        +    +  +      R     
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187

Query: 181 YSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK 240
                    +  S         + +         + + D        +   +G   + + 
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD---KTIKMWDVSTGMCLMTLV 244

Query: 241 INHEGEVNRARYMPQNPCVIATKTPSSD--VLVFDYTKHPSKPDPNGECHPDLRLRGHQK 298
             H+  V    +      +++    + D  + V+DY         N  C     L  H+ 
Sbjct: 245 -GHDNWVRGVLFHSGGKFILSC---ADDKTLRVWDY--------KNKRCM--KTLNAHEH 290

Query: 299 EGYGLSWNPSLNGYLLSASDDHTICLWD 326
               L ++ +   Y+++ S D T+ +W+
Sbjct: 291 FVTSLDFHKT-APYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 46/316 (14%), Positives = 91/316 (28%), Gaps = 53/316 (16%)

Query: 50  GHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTP 109
           GH + ++   ++P    ++ S SED  +                        K+W   T 
Sbjct: 15  GHRSPVTRVIFHPVFSVMV-SASEDATI------------------------KVWDYETG 49

Query: 110 FLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQW 169
                +  H      ++      +    + +  I   +      +   H  +    +   
Sbjct: 50  DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI 109

Query: 170 LPD----VTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDF 225
           +P+    V+    K   +  +  G        H     +  PN+D    AS  +      
Sbjct: 110 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169

Query: 226 GGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK----- 280
               +   K E+     H   V    + P++     ++   S+                 
Sbjct: 170 WVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226

Query: 281 ------PDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKEN 334
                     G C   + L GH     G+ ++     ++LS +DD T+ +WD     K  
Sbjct: 227 KTIKMWDVSTGMCL--MTLVGHDNWVRGVLFHSG-GKFILSCADDKTLRVWDY----KNK 279

Query: 335 RVIDAKTIFTGHTAVV 350
           R +        H   V
Sbjct: 280 RCMK---TLNAHEHFV 292

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 350
           L GH+     + ++P     ++SAS+D TI +WD           D +    GHT  V
Sbjct: 13  LSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETG-------DFERTLKGHTDSV 62

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 5e-08
 Identities = 36/328 (10%), Positives = 79/328 (24%), Gaps = 26/328 (7%)

Query: 1   VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
           + + P    I    G    +   D           D +   P ++   G  ++ ++   +
Sbjct: 23  LSYDPTTNAIAYPCGKSAFVRCLD-----------DGDSKVPPVVQFTGHGSSVVTTVKF 71

Query: 61  NPNEPW-VICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHA 119
           +P +    +CS  E        V+      D     V       ++     + D+     
Sbjct: 72  SPIKGSQYLCSGDESG-----KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW-DF 125

Query: 120 LEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGK 179
                       D   V               +   +       S   + +         
Sbjct: 126 EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 185

Query: 180 DYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI 239
            Y                          + D+        +D+      G     ++   
Sbjct: 186 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE 245

Query: 240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE 299
                 +         +    AT    + + V+D T          +C     L   Q  
Sbjct: 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT--------TSKCVQKWTLDKQQLG 297

Query: 300 GYGLSWNPSLNGYLLSASDDHTICLWDI 327
              +    + NG ++S S D T+  +++
Sbjct: 298 NQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 41/339 (12%), Positives = 90/339 (26%), Gaps = 33/339 (9%)

Query: 1   VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED----AEDGPPELLFIHGGHTAKIS 56
           V++S   E +  ++G ++   V+ +S         D     +D               I 
Sbjct: 68  VKFSNDGEYL--ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR 125

Query: 57  DFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVM 116
              ++P+  ++     +  I                 E+ I         +         
Sbjct: 126 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 185

Query: 117 THALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRP 176
           T  +         L            +   +  ++    +  A+        +L +    
Sbjct: 186 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 245

Query: 177 EGKDYSIHRL-ILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI 235
           E +  + H+  +     + +   ++  S      D      N              SG  
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGS-----LDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 236 EIEIKINHEGEVNRARYMPQNPCVIATKTPSSD--VLVFDYTKHPSKPDPNGECHPDLRL 293
           E+   I H+  V        +  ++   + S D  VL +D          +G     L L
Sbjct: 301 EV-TYIGHKDFVLSVATTQNDEYIL---SGSKDRGVLFWDK--------KSGNPL--LML 346

Query: 294 RGHQKEGYGLSWNPSL-----NGYLLSASDDHTICLWDI 327
           +GH+     ++               + S D    +W  
Sbjct: 347 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 26/363 (7%), Positives = 79/363 (21%), Gaps = 49/363 (13%)

Query: 1   VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
             W+  + T +A    +  +H+++                    +     H  +++   W
Sbjct: 13  HAWNK-DRTQIAICPNNHEVHIYEK------------SGNKWVQVHELKEHNGQVTGVDW 59

Query: 61  NPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHAL 120
            P+    I +   D    + ++         V  R+      +        + +     +
Sbjct: 60  APDSNR-IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 118

Query: 121 EWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 180
                  Q          ++       +   +   +  A          +      E ++
Sbjct: 119 ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA-AGSCDFKCRIFSAYIKEVEE 177

Query: 181 YSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFG--GFGSVSGKIEIE 238
                         E      +S    +        +                  K+ + 
Sbjct: 178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 237

Query: 239 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFD-------YTKHPSKPDPNGEC---- 287
              +    +    ++ ++  V A       +  +D       +      P  + +     
Sbjct: 238 TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297

Query: 288 ------------------HPDLRLRGHQKEGYGLSWNPSLNG---YLLSASDDHTICLWD 326
                                     H+     +S             +   D  + +WD
Sbjct: 298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357

Query: 327 INA 329
           + +
Sbjct: 358 VRS 360

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 1e-05
 Identities = 41/329 (12%), Positives = 81/329 (24%), Gaps = 51/329 (15%)

Query: 1   VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
           +  S  +   L S+  +  ++ WD+S  G                     H   I+    
Sbjct: 18  LSSSA-DGKTLFSADAEGHINSWDIST-GISNRV------------FPDVHATMITGIKT 63

Query: 61  NPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHAL 120
                    S  +   +                           K     L    +  A+
Sbjct: 64  TSKGDLFTVSWDDHLKVV----------------PAGGSGVDSSKAVANKLSSQPLGLAV 107

Query: 121 EWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 180
                 A         I    K+ +    +    V     +           V   +   
Sbjct: 108 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 167

Query: 181 YSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK 240
            S+  +    H ++  +             +   A    TD+       SV+   E+   
Sbjct: 168 ASVSEVKTIVHPAEITSV----------AFSNNGAFLVATDQSRKVIPYSVANNFELAHT 217

Query: 241 INHEGEVNRARYMPQNPCVIATKTPSSD--VLVFDYTKHPSKPDPNGECHPDLRLRGHQK 298
            +      +   +  +P  +   T S D  V+V++  K           HP +    H  
Sbjct: 218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK--------PSDHPIIIKGAHAM 269

Query: 299 EGYGLSWNPSLNGYLLSASDDHTICLWDI 327
                    +    ++SA  D  I  W++
Sbjct: 270 SSVNSVIWLN-ETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 350
             GH K    LS +      L SA  +  I  WDI+ T   NR          H  ++
Sbjct: 8   RYGHNKAITALSSSAD-GKTLFSADAEGHINSWDIS-TGISNR-----VFPDVHATMI 58

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 37/321 (11%), Positives = 71/321 (22%), Gaps = 50/321 (15%)

Query: 6   HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 65
           +++  + S   D  + +WD +                E   I  GHT  +    ++    
Sbjct: 23  YDDQKIVSGLRDNTIKIWDKNT--------------LECKRILTGHTGSVLCLQYDERVI 68

Query: 66  WVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSL 125
               S S   +  +                                 + V+        +
Sbjct: 69  ITGSSDSTVRVWDV--------------------NTGEMLNTLIHHCEAVLHLRFNNGMM 108

Query: 126 TAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHR 185
                     V +            L        +                   D +I  
Sbjct: 109 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSA------SGDRTIKV 162

Query: 186 LILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEG 245
               T       +     +       +   S      G       +            EG
Sbjct: 163 WNTSTCEFVRTLNGHKRGIACLQYRDRLVVS------GSSDNTIRLWDIECGACLRVLEG 216

Query: 246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSW 305
                R +  +   I +      + V+D         P G       L  H    + L +
Sbjct: 217 HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT-LCLRTLVEHSGRVFRLQF 275

Query: 306 NPSLNGYLLSASDDHTICLWD 326
           +      ++S+S D TI +WD
Sbjct: 276 DEF---QIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 10/56 (17%)

Query: 295 GHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 350
              K  Y L ++      ++S   D+TI +WD N         + K I TGHT  V
Sbjct: 13  ETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTL-------ECKRILTGHTGSV 58

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 32/329 (9%), Positives = 69/329 (20%), Gaps = 52/329 (15%)

Query: 1   VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
           V  S     +   +G    + VWD+S  G +          P            I     
Sbjct: 57  VTISNPTRHVY--TGGKGCVKVWDISHPGNKS---------PVSQLDCLNRDNYIRSCKL 105

Query: 61  NPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHAL 120
            P+   +I       +                                          A 
Sbjct: 106 LPDGCTLIVGGEASTLSIW---------------------DLAAPTPRIKAELTSSAPAC 144

Query: 121 EWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 180
              +++       +   +    +W  +   L      H      +            G D
Sbjct: 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204

Query: 181 YSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK 240
            ++    L      +Q+        L                           K +    
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSL---GYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261

Query: 241 INHEGEVNRARYMPQNPCVIATKTPSSD--VLVFDYTKHPSKPDPNGECHPDLRLRGHQK 298
             HE  V   ++       ++T     D  +  +          P G     +       
Sbjct: 262 HLHESCVLSLKFAYCGKWFVST---GKDNLLNAWRT--------PYGAS---IFQSKESS 307

Query: 299 EGYGLSWNPSLNGYLLSASDDHTICLWDI 327
                  +   + Y+++ S D    ++++
Sbjct: 308 SVLSCDISVD-DKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 17/83 (20%)

Query: 1   VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
           ++++        S+G D  L+ W                            ++ +     
Sbjct: 271 LKFAY-CGKWFVSTGKDNLLNAWRTPY---------------GASIFQSKESSSVLSCDI 314

Query: 61  NPNEPWVICSVSEDNIMQILSVV 83
           + ++ + I + S D    +  V+
Sbjct: 315 SVDDKY-IVTGSGDKKATVYEVI 336

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 30/343 (8%), Positives = 80/343 (23%), Gaps = 42/343 (12%)

Query: 1   VQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 59
           V+     +        +   L ++D      E+                  +   +    
Sbjct: 48  VRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE---------------ENLGNVFAMG 92

Query: 60  WNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHA 119
            + N  + + +     IM +          +   E +I +               +    
Sbjct: 93  VDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 152

Query: 120 LEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSL-TAQWLPDVTRPEG 178
            +   + A  + D+             +         +  L + S  +    PD      
Sbjct: 153 TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF 212

Query: 179 KDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE 238
               + +  +        N       +L       +A  YD +              +  
Sbjct: 213 SFEVVSKPFVIPLIPGSPN-----PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR 267

Query: 239 IKINHEGEVNRARYMPQNPCVIATKTPSSD--VLVFDYTKHPSKPDPNGECHPDLRLRGH 296
           + I  E  +               +       +L +D                  ++   
Sbjct: 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR--------------KVTEV 313

Query: 297 QKEGYGLSWNPSLNG-YLLSASDDHTICLWDINATPKENRVID 338
           +     L  +   +   ++   DD  I  + +   P++ R ++
Sbjct: 314 KNNLTDLRLSA--DRKTVMVRKDDGKIYTFPLE-KPEDERTVE 353

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 4e-05
 Identities = 34/299 (11%), Positives = 71/299 (23%), Gaps = 24/299 (8%)

Query: 40  GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQI-----------LSVVCVEPF 88
           G  E+L    GH   I+  + NP     + S S D  +               +V ++  
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS 55

Query: 89  DDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNT 148
                  +  ++       T   +      A          L +   ++  +        
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115

Query: 149 PFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPN 208
               +   +      +  A  L +    +    S   +             L A     +
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK------TPLRAKPSYIS 169

Query: 209 EDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSD 268
                         G    +   S +++         ++N   + P        +     
Sbjct: 170 ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL 229

Query: 269 VLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDI 327
           V       +               L  H+     L W       L+S+  D  I  W++
Sbjct: 230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 17/66 (25%)

Query: 285 GECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT 344
           G       + GH K    L+ NP     L+S S D  I  W  +            ++  
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSS------------SMHQ 43

Query: 345 GHTAVV 350
            H+ ++
Sbjct: 44  DHSNLI 49

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 6e-05
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 16/79 (20%)

Query: 1   VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
           V +S  +  +L +   D   +VWD  K               +   +  GH  ++S    
Sbjct: 276 VSFSK-SGRLLLAGYDDFNCNVWDALK--------------ADRAGVLAGHDNRVSCLGV 320

Query: 61  NPNEPWVICSVSEDNIMQI 79
             +   V  + S D+ ++I
Sbjct: 321 TDDGMAVA-TGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 34/290 (11%), Positives = 61/290 (21%), Gaps = 15/290 (5%)

Query: 50  GHTAKISDFSWNPNEPWVICSVSEDNIMQILS------VVCVEPFDDAVEERVINEEYKI 103
           GH AKI    W  +    + S S+D  + I        V  +      V           
Sbjct: 53  GHLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111

Query: 104 WKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWP 163
                      +        ++                +    N         T AL   
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171

Query: 164 SLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLL-IASVQLPNEDAQFDASNYD--- 219
               Q                        S   +    +  V+       F     D   
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231

Query: 220 ---TDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTK 276
                 G+    GS      +      +  +  +           + + S  +L+  Y  
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291

Query: 277 HPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWD 326
                    +      L GH      L         + + S D  + +W+
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGSWDSFLKIWN 340

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 32/357 (8%), Positives = 81/357 (22%), Gaps = 55/357 (15%)

Query: 1   VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
              +P N T    +     ++  DL           +           G     +  F+ 
Sbjct: 45  AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV--------PGEVGRSMYSFAI 96

Query: 61  NPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHAL 120
           +P+   V  +V+    +    VV                       +      +      
Sbjct: 97  SPDGKEVYATVNPTQRLNDHYVVK------------PPRLEVFSTADGLEAKPVRTFPMP 144

Query: 121 EWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD 180
               L          V   +       T      +                         
Sbjct: 145 RQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLR---------------NWNRKGY 189

Query: 181 YSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIK 240
            +   L    H S      ++ ++    +D Q  A+        +      +GK   +  
Sbjct: 190 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA--DLLYGYLSVDLKTGKTHTQEF 247

Query: 241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEG 300
            +           P++P  I      + +  +D            +    ++        
Sbjct: 248 ADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLK--------QRKL---IKAANLDHTY 294

Query: 301 YGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIER 357
           Y ++++      L      + + +++    P     +    +  G  +    ++  R
Sbjct: 295 YCVAFDKK-GDKLYLGGTFNDLAVFN----PDTLEKVKNIKLPGGDMSTTTPQVFIR 346

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEL 352
            + H  + + +S   S   + +S S D  + +WD      EN    + + F   + +  +
Sbjct: 10  GKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 353 ELIERLTKKADPVCTL 368
           ++++ + + A  +C +
Sbjct: 67  DVLQAIERDAFELCLV 82

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 6e-04
 Identities = 8/79 (10%), Positives = 23/79 (29%), Gaps = 12/79 (15%)

Query: 1  VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 60
          ++  P ++++L  +  D  L V+      +              L     +   +   ++
Sbjct: 17 IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVD-----------LLQSLRYKHPLLCCNF 64

Query: 61 NPNEPWVICSVSEDNIMQI 79
            N    I   +    +  
Sbjct: 65 IDNTDLQIYVGTVQGEILK 83

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 7/58 (12%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV 350
            +  +     +   PS    LL  S D ++ ++  +   K   ++        +   +
Sbjct: 7   EQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLL----QSLRYKHPL 59

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (89), Expect = 6e-04
 Identities = 21/325 (6%), Positives = 68/325 (20%), Gaps = 39/325 (12%)

Query: 3   WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 62
            +P  + I         ++   +                     I+  H+ + +    +P
Sbjct: 25  NTPAGDKIQ--YCNGTSVYTVPVGS--------------LTDTEIYTEHSHQTTVAKTSP 68

Query: 63  NEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEW 122
           +  +   S      ++I                       I   +       V      +
Sbjct: 69  SGYY-CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127

Query: 123 PSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYS 182
             +           +  + +                +    +  A +     + +     
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187

Query: 183 IHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKIN 242
             + +     + + +                          D              +  +
Sbjct: 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247

Query: 243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG 302
            +G              IA+ +    + +++            +    + + G + E   
Sbjct: 248 PDGTK------------IASASADKTIKIWNVA--------TLKVEKTIPV-GTRIEDQQ 286

Query: 303 LSWNPSLNGYLLSASDDHTICLWDI 327
           L    +    L+S S +  I   + 
Sbjct: 287 LGIIWT-KQALVSISANGFINFVNP 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 27/358 (7%), Positives = 82/358 (22%), Gaps = 37/358 (10%)

Query: 11  LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS 70
           + +     +L V D  K                                  P       +
Sbjct: 4   ILAPARPDKLVVIDTEK-MAVDKV-----------ITIADAGPTPMVPMVAPGGRIAYAT 51

Query: 71  VSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWL 130
           V++           +   D    E +   +    ++    L+   ++   +  ++    +
Sbjct: 52  VNKSE--------SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPV 103

Query: 131 PDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR-----------PEGK 179
                    +                            W  D ++               
Sbjct: 104 RLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEA 163

Query: 180 DYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEI 239
              +    + +  ++      + +V   +E +   A+ + T + D       + +  +  
Sbjct: 164 GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT 223

Query: 240 KINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKE 299
                GE+        +    +T    +    F         D   E +  ++       
Sbjct: 224 MDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDL--EKNASIKRVPLPHS 281

Query: 300 GYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIER 357
            Y ++ +      +        +  +D   T ++   +          ++  + L  R
Sbjct: 282 YYSVNVSTD-GSTVWLGGALGDLAAYDA-ETLEKKGQV--DLPGNASMSLASVRLFTR 335

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 33/336 (9%), Positives = 77/336 (22%), Gaps = 16/336 (4%)

Query: 6   HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 65
             +  + +   D+ + V+D             + G   L + HGG     S         
Sbjct: 21  FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD 80

Query: 66  WVICSVSEDNIMQILSVVCVEPF-------------DDAVEERVINEEYKIWKKNTPFLY 112
                 +        +V C++               D+ +    + +E  +        Y
Sbjct: 81  IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 140

Query: 113 DLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPD 172
            LV     E P         +  V           +    + ++   +            
Sbjct: 141 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 200

Query: 173 VTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS 232
             R     Y   R    + + D    +                +           F   +
Sbjct: 201 TDRIYSTIYDHERKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLSDKFLVSA 259

Query: 233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLR 292
                    +      +  Y   N   I T   S ++LV       +  +          
Sbjct: 260 AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHAN 319

Query: 293 LRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDIN 328
           +     + + +++       + +   D    L  ++
Sbjct: 320 ILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEILD 353

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.88
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.84
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.83
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.8
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.56
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.53
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.37
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.35
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.33
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.31
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.29
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.25
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.11
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.07
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.03
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.78
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.72
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.72
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.69
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.64
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.51
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.43
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.42
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.34
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.28
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.26
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.21
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.14
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.13
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.97
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.65
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.26
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.44
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.86
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.15
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	93.95
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.06
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	88.16
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	86.77
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	85.35
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	84.64
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	83.5

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-35  Score=248.60  Aligned_cols=275  Identities=15%  Similarity=0.146  Sum_probs=193.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|+++ +||||+ ||.|+|||+.....         ..........+|.+.|.+++|+|+++ +|++|+.|++|++|
T Consensus        57 v~fs~~g~-~latg~-dg~V~iWd~~~~~~---------~~~~~~~~~~~h~~~I~~v~~s~dg~-~l~s~~~dg~i~iw  124 (337)
T d1gxra_          57 VTISNPTR-HVYTGG-KGCVKVWDISHPGN---------KSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIW  124 (337)
T ss_dssp             EEECSSSS-EEEEEC-BSEEEEEETTSTTC---------CSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEE
T ss_pred             EEECCCCC-EEEEEE-CCEEEEEEccCCcc---------cceeEEeeecCCCCcEEEEEEcCCCC-EEEEeecccccccc
Confidence            57999997 799987 89999999976321         11223445568999999999999999 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.....                      .+...+.+|  ...+..++|+|++..++    ++.+++|+..+........
T Consensus       125 d~~~~~~----------------------~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~  180 (337)
T d1gxra_         125 DLAAPTP----------------------RIKAELTSS--APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ  180 (337)
T ss_dssp             ECCCC------------------------EEEEEEECS--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ccccccc----------------------ccccccccc--cccccccccccccccccccccccccccccccccccccccc
Confidence            9865310                      011122233  55688999999998877    7899999987765543333


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+...  ..++.+                                     ++++..+.....|.....|..   ..++  
T Consensus       181 ~~~~~--v~~l~~-------------------------------------s~~~~~~~~~~~d~~v~i~d~---~~~~--  216 (337)
T d1gxra_         181 GHTDG--ASCIDI-------------------------------------SNDGTKLWTGGLDNTVRSWDL---REGR--  216 (337)
T ss_dssp             CCSSC--EEEEEE-------------------------------------CTTSSEEEEEETTSEEEEEET---TTTE--
T ss_pred             ccccc--cccccc-------------------------------------ccccccccccccccccccccc---ccce--
Confidence            22211  222333                                     222222222223322222211   0111  


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ......|...|.+++|+|++. +|++|+.|+.|++||++        ...   ......|...|++++|+|++ .+|++|
T Consensus       217 ~~~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~i~d~~--------~~~---~~~~~~~~~~i~~v~~s~~g-~~l~s~  283 (337)
T d1gxra_         217 QLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVN--------KPD---KYQLHLHESCVLSLKFAYCG-KWFVST  283 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------SSC---EEEECCCSSCEEEEEECTTS-SEEEEE
T ss_pred             eecccccccceEEEEEccccc-ccceecccccccccccc--------ccc---cccccccccccceEEECCCC-CEEEEE
Confidence            233456899999999999995 89999999999999986        222   33567899999999999998 799999


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccceeeEE
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKKKEV  377 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~~~~  377 (384)
                      +.||.|++||+.+++       .+..+. |...|++++|+|+++.+++.+ .++..+-+++
T Consensus       284 s~Dg~i~iwd~~~~~-------~~~~~~-~~~~v~~~~~s~d~~~l~t~s-~D~~I~vWdl  335 (337)
T d1gxra_         284 GKDNLLNAWRTPYGA-------SIFQSK-ESSSVLSCDISVDDKYIVTGS-GDKKATVYEV  335 (337)
T ss_dssp             ETTSEEEEEETTTCC-------EEEEEE-CSSCEEEEEECTTSCEEEEEE-TTSCEEEEEE
T ss_pred             eCCCeEEEEECCCCC-------EEEEcc-CCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEE
Confidence            999999999999987       776654 788999999999999876644 3443444443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.3e-35  Score=251.41  Aligned_cols=236  Identities=12%  Similarity=0.123  Sum_probs=182.6

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|||++. +||+|+.|+.|+|||+....            ......+.+|.++|++|+|+|+++ +|++|+.|++|++|
T Consensus        13 ~~~s~dg~-~la~~~~~~~i~iw~~~~~~------------~~~~~~l~gH~~~V~~l~fsp~~~-~l~s~s~D~~i~vW   78 (371)
T d1k8kc_          13 HAWNKDRT-QIAICPNNHEVHIYEKSGNK------------WVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNAYVW   78 (371)
T ss_dssp             EEECTTSS-EEEEECSSSEEEEEEEETTE------------EEEEEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEE
T ss_pred             EEECCCCC-EEEEEeCCCEEEEEECCCCC------------EEEEEEecCCCCCEEEEEECCCCC-EEEEEECCCeEEEE
Confidence            47999997 89999999999999997521            356778899999999999999999 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+..+..             ....         .+.+|  ...+.+++|+|+++.++    ++++++|+........   
T Consensus        79 d~~~~~~-------------~~~~---------~~~~~--~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~---  131 (371)
T d1k8kc_          79 TLKGRTW-------------KPTL---------VILRI--NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW---  131 (371)
T ss_dssp             EEETTEE-------------EEEE---------ECCCC--SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE---
T ss_pred             eeccccc-------------cccc---------ccccc--cccccccccccccccceeecccCcceeeeeecccccc---
Confidence            9976410             0000         11222  56789999999998877    7778887653221100   


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                                                                                    ..
T Consensus       132 ------------------------------------------------------------------------------~~  133 (371)
T d1k8kc_         132 ------------------------------------------------------------------------------VC  133 (371)
T ss_dssp             ------------------------------------------------------------------------------EE
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          00


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCC--------CCCccceeeecCCCCceEEEEeCCC
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDP--------NGECHPDLRLRGHQKEGYGLSWNPS  308 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------~~~~~~~~~~~~h~~~i~~~~~s~~  308 (384)
                      ......|...|.+++|+|++. +|++|+.|+.|++|+..........        ......+....+|...|.+++|+|+
T Consensus       134 ~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  212 (371)
T d1k8kc_         134 KHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN  212 (371)
T ss_dssp             EEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred             ccccccccccccccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecc
Confidence            112235778899999999995 8999999999999998643322100        0112234566789999999999999


Q ss_pred             CCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccc
Q psy4577         309 LNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADP  364 (384)
Q Consensus       309 ~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  364 (384)
                      + .+|++++.|++|++||+.+++       .+..+..|..+|++++|+|+++.+++
T Consensus       213 g-~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~~v~s~~fs~d~~~la~  260 (371)
T d1k8kc_         213 G-SRVAWVSHDSTVCLADADKKM-------AVATLASETLPLLAVTFITESSLVAA  260 (371)
T ss_dssp             S-SEEEEEETTTEEEEEEGGGTT-------EEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred             c-ccccccccCCcceEEeeeccc-------ceeeeecccccceeeeecCCCCEEEE
Confidence            8 799999999999999999988       89999999999999999999987654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.6e-34  Score=239.17  Aligned_cols=267  Identities=13%  Similarity=0.105  Sum_probs=182.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++++|+|+ .||.++ ++.|.+||+.+              ......+.+|.+.|++++|+|+|+ +||+|+.||+|++|
T Consensus        23 ~a~~~~g~-~l~~~~-~~~v~i~~~~~--------------~~~~~~~~~H~~~v~~~~~sp~g~-~latg~~dg~i~iw   85 (311)
T d1nr0a1          23 LGNTPAGD-KIQYCN-GTSVYTVPVGS--------------LTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIW   85 (311)
T ss_dssp             CEECTTSS-EEEEEE-TTEEEEEETTC--------------SSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred             EEEcCCCC-EEEEEe-CCEEEEEECCC--------------CceeEEEcCCCCCEEEEEEeCCCC-eEeccccCceEeee
Confidence            47899998 577774 67899999986              355566789999999999999999 78999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee------cceeeeeccccccccce
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI------NEEYKIWKKNTPFLYDL  154 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------d~~v~~w~~~~~~~~~~  154 (384)
                      |+...+..                      ....+.+|  ..+|.+++|+|+++.++      +..+++|+.........
T Consensus        86 d~~~~~~~----------------------~~~~~~~~--~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~  141 (311)
T d1nr0a1          86 DTTQTTHI----------------------LKTTIPVF--SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN  141 (311)
T ss_dssp             ESSSTTCC----------------------EEEEEECS--SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBC
T ss_pred             eeeccccc----------------------cccccccc--cCcccccccccccccccccccccccccccccccccccccc
Confidence            99774211                      11123334  56799999999999877      34478888776554433


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccc-cccccCcCCCCCCccCCCC
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFD-ASNYDTDKGDFGGFGSVSG  233 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~  233 (384)
                      +..+..  ++.++.|.|                                     ++...+ ....|.....|.    ...
T Consensus       142 l~~h~~--~v~~v~~~~-------------------------------------~~~~~l~sgs~d~~i~i~d----~~~  178 (311)
T d1nr0a1         142 LTGQAR--AMNSVDFKP-------------------------------------SRPFRIISGSDDNTVAIFE----GPP  178 (311)
T ss_dssp             CCCCSS--CEEEEEECS-------------------------------------SSSCEEEEEETTSCEEEEE----TTT
T ss_pred             cccccc--ccccccccc-------------------------------------cceeeeccccccccccccc----ccc
Confidence            333321  122333333                                     222211 122233222221    112


Q ss_pred             ceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577         234 KIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       234 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l  313 (384)
                      .........|...|++++|+|++. ++++++.|+.|++||++......  . .........+|.+.|++++|+|++ .+|
T Consensus       179 ~~~~~~~~~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~--~-~~~~~~~~~~h~~~V~~~~~s~~~-~~l  253 (311)
T d1nr0a1         179 FKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTG--V-FEDDSLKNVAHSGSVFGLTWSPDG-TKI  253 (311)
T ss_dssp             BEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE--E-CBCTTSSSCSSSSCEEEEEECTTS-SEE
T ss_pred             cccccccccccccccccccCcccc-ccccccccccccccccccccccc--c-ccccccccccccccccccccCCCC-CEE
Confidence            233555668999999999999995 99999999999999986311000  0 000112345799999999999998 799


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccccceeeeeccCC---cEeEEEEecCCCccccc
Q psy4577         314 LSASDDHTICLWDINATPKENRVIDAKTIFTGHTA---VVELELIERLTKKADPV  365 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~sp~~~~~~~~  365 (384)
                      +||+.||+|+|||+++++       ++.++..|..   .+.++.|+  +..+.+.
T Consensus       254 ~tgs~Dg~v~iwd~~t~~-------~~~~l~~~~~~~~~~~~~~~~--~~~l~s~  299 (311)
T d1nr0a1         254 ASASADKTIKIWNVATLK-------VEKTIPVGTRIEDQQLGIIWT--KQALVSI  299 (311)
T ss_dssp             EEEETTSEEEEEETTTTE-------EEEEEECCSSGGGCEEEEEEC--SSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCc-------EEEEEECCCCccceEEEEEec--CCEEEEE
Confidence            999999999999999988       8888876653   34445554  4444433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4e-33  Score=237.72  Aligned_cols=269  Identities=16%  Similarity=0.197  Sum_probs=179.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|+++ +||||+.||+|+|||+.+              .+.+..+.+|...|++++|+|++. ++++|+.|+.+++|
T Consensus        61 l~~s~~~~-~l~sgs~Dg~v~iWd~~~--------------~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~d~~i~~~  124 (340)
T d1tbga_          61 MHWGTDSR-LLVSASQDGKLIIWDSYT--------------TNKVHAIPLRSSWVMTCAYAPSGN-YVACGGLDNICSIY  124 (340)
T ss_dssp             EEECTTSS-EEEEEETTTEEEEEETTT--------------TEEEEEEECSCSCEEEEEECTTSS-EEEEEETTCCEEEE
T ss_pred             EEECCCCC-EEEEEECCCceeeeeccc--------------ceeEEEEecccccEEeeEeeccce-eeeeecccceeecc
Confidence            57999997 899999999999999986              477888899999999999999999 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceeec
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMT  157 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~  157 (384)
                      +........                    .....+.+|  ...........+.....   +.....+.............
T Consensus       125 ~~~~~~~~~--------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (340)
T d1tbga_         125 NLKTREGNV--------------------RVSRELAGH--TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG  182 (340)
T ss_dssp             ESSSSCSCC--------------------CEEEEECCC--SSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred             ccccccccc--------------------ccceecccc--cccccccccccccccccccccccccccccccccccccccc
Confidence            986641110                    000111122  11222222333322222   44444443332221111111


Q ss_pred             ccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeE
Q psy4577         158 HALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEI  237 (384)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  237 (384)
                      ....                                       +......+....+.....|.....|    +.......
T Consensus       183 ~~~~---------------------------------------~~~~~~~~~~~~~~~~~~d~~v~i~----d~~~~~~~  219 (340)
T d1tbga_         183 HTGD---------------------------------------VMSLSLAPDTRLFVSGACDASAKLW----DVREGMCR  219 (340)
T ss_dssp             CSSC---------------------------------------EEEEEECTTSSEEEEEETTTEEEEE----ETTTTEEE
T ss_pred             ccee---------------------------------------EeeeccccccceeEEeecCceEEEE----ECCCCcEE
Confidence            1000                                       1111111111111122222222221    11122335


Q ss_pred             EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577         238 EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       238 ~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      ..+.+|...|++++|+|++. +|++|+.||.|++||++        ............|...|.+++|+|++ .+|++|+
T Consensus       220 ~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~  289 (340)
T d1tbga_         220 QTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLR--------ADQELMTYSHDNIICGITSVSFSKSG-RLLLAGY  289 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT--------TTEEEEEECCTTCCSCEEEEEECSSS-CEEEEEE
T ss_pred             EEEeCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeec--------ccccccccccccccCceEEEEECCCC-CEEEEEE
Confidence            56678999999999999995 99999999999999986        33332333445677789999999998 7999999


Q ss_pred             CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         318 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      .||.|++||+.+++       ++.++.+|.++|++++|+|+++.+++.+.
T Consensus       290 ~dg~i~iwd~~~~~-------~~~~~~~H~~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         290 DDFNCNVWDALKAD-------RAGVLAGHDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             TTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             CCCEEEEEECCCCc-------EEEEEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence            99999999999998       99999999999999999999998876543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.5e-33  Score=234.60  Aligned_cols=264  Identities=17%  Similarity=0.255  Sum_probs=196.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|+++ +||||+.||+|+|||+.+              .+++.++.+|.+.|.+++|+|++. ++++++.++++.+|
T Consensus        23 l~~sp~~~-~l~s~s~Dg~i~iWd~~~--------------~~~~~~~~~h~~~V~~~~~~~~~~-~~~~~~~~~~~~~~   86 (317)
T d1vyhc1          23 VIFHPVFS-VMVSASEDATIKVWDYET--------------GDFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLW   86 (317)
T ss_dssp             EEECSSSS-EEEEEESSSCEEEEETTT--------------CCCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCCCEE
T ss_pred             EEEcCCCC-EEEEEeCCCeEEEEECCC--------------CCEEEEEeCCCCcEEEEeeecccc-cccccccccccccc
Confidence            57999997 899999999999999986              366778899999999999999999 88899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      +....+.             .           ..+.+|  ...+.++.|+|++..++    |+.+++|+.........+.
T Consensus        87 ~~~~~~~-------------~-----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  140 (317)
T d1vyhc1          87 DFQGFEC-------------I-----------RTMHGH--DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT  140 (317)
T ss_dssp             ETTSSCE-------------E-----------ECCCCC--SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccc-------------c-----------cccccc--cccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc
Confidence            8866411             0           011122  45677899999998877    8999999997765544433


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+...  ...+.+.++                                     +..+.....|.....+.    ......
T Consensus       141 ~~~~~--~~~~~~~~~-------------------------------------~~~l~~~~~d~~v~~~~----~~~~~~  177 (317)
T d1vyhc1         141 GHREW--VRMVRPNQD-------------------------------------GTLIASCSNDQTVRVWV----VATKEC  177 (317)
T ss_dssp             CCSSC--EEEEEECTT-------------------------------------SSEEEEEETTSCEEEEE----TTTCCE
T ss_pred             cCCCc--ceeeecccC-------------------------------------CCEEEEEeCCCeEEEEe----ecccee
Confidence            33221  222333322                                     22222222222222111    111122


Q ss_pred             EEEEeecCCceEEEEEcCCCC-------------------cEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC
Q psy4577         237 IEIKINHEGEVNRARYMPQNP-------------------CVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ  297 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~-------------------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~  297 (384)
                      ...+..|...+.+++|+|++.                   .++++++.|+.|++||++        .+  .++..+.+|.
T Consensus       178 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~--------~~--~~~~~~~~~~  247 (317)
T d1vyhc1         178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS--------TG--MCLMTLVGHD  247 (317)
T ss_dssp             EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT--------TT--EEEEEEECCS
T ss_pred             eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC--------CC--cEEEEEeCCC
Confidence            445557788888888877541                   278999999999999986        33  3567889999


Q ss_pred             CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       298 ~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      ..|.+++|+|++ .+|++|+.||.|++||+++++       ++.++.+|.+.|++++|+|+++.+++.+.
T Consensus       248 ~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~h~~~V~~~~~s~~~~~l~s~s~  309 (317)
T d1vyhc1         248 NWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKR-------CMKTLNAHEHFVTSLDFHKTAPYVVTGSV  309 (317)
T ss_dssp             SCEEEEEECSSS-SCEEEEETTTEEEEECCTTSC-------CCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             CCEEEEEECCCC-CEEEEEECCCeEEEEECCCCc-------EEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            999999999998 799999999999999999988       99999999999999999999998876544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-33  Score=240.68  Aligned_cols=292  Identities=15%  Similarity=0.181  Sum_probs=181.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCC----CCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCe
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED----AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI   76 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~   76 (384)
                      |+|||+|+ +||+|+ |++|+|||+.+.........    .............+|...|++++|+|+++ +|++|+.||+
T Consensus        68 l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-~l~s~~~dg~  144 (388)
T d1erja_          68 VKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRL  144 (388)
T ss_dssp             EEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS-EEEEEETTSC
T ss_pred             EEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC-cceecccccc
Confidence            57999997 899986 89999999976321110000    00001111223356888999999999999 8889999999


Q ss_pred             EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeecccccccc
Q psy4577          77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~  152 (384)
                      |++||...++.             +.           ...+|  ...|.+++|++++..++    ++.+++|+.......
T Consensus       145 v~i~~~~~~~~-------------~~-----------~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  198 (388)
T d1erja_         145 IRIWDIENRKI-------------VM-----------ILQGH--EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS  198 (388)
T ss_dssp             EEEEETTTTEE-------------EE-----------EECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ccccccccccc-------------cc-----------ccccc--cccccccccccccccccccccceeeeeeeccccccc
Confidence            99999877411             11           12233  56788999999988776    889999998765443


Q ss_pred             ceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         153 DLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                      ........   ...+.+.+...         ..+..+..    .+.+.+..+.                .....    ..
T Consensus       199 ~~~~~~~~---~~~~~~~~~~~---------~~l~~~~~----d~~i~i~~~~----------------~~~~~----~~  242 (388)
T d1erja_         199 LTLSIEDG---VTTVAVSPGDG---------KYIAAGSL----DRAVRVWDSE----------------TGFLV----ER  242 (388)
T ss_dssp             EEEECSSC---EEEEEECSTTC---------CEEEEEET----TSCEEEEETT----------------TCCEE----EE
T ss_pred             cccccccc---cccccccCCCC---------CeEEEEcC----CCeEEEeecc----------------cCccc----ee
Confidence            32222111   11122211100         01111110    1112221111                00000    00


Q ss_pred             CceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCC--CCCccceeeecCCCCceEEEEeCCCCC
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDP--NGECHPDLRLRGHQKEGYGLSWNPSLN  310 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~h~~~i~~~~~s~~~~  310 (384)
                      -........+|.+.|.+++|+|++. +|++|+.||.|++||++........  ............|...|++++|+|++ 
T Consensus       243 ~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-  320 (388)
T d1erja_         243 LDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-  320 (388)
T ss_dssp             EC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-
T ss_pred             eccccccccCCCCCEEEEEECCCCC-EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC-
Confidence            0001122346889999999999995 9999999999999998743221100  01122344667799999999999998 


Q ss_pred             CeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEE------ecCCCcccccc
Q psy4577         311 GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELI------ERLTKKADPVC  366 (384)
Q Consensus       311 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~------sp~~~~~~~~c  366 (384)
                      .+|++|+.||+|++||+++++       ++.++.+|.+.|++++|      +|+++.+++.+
T Consensus       321 ~~l~sg~~dg~i~vwd~~~~~-------~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s  375 (388)
T d1erja_         321 EYILSGSKDRGVLFWDKKSGN-------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS  375 (388)
T ss_dssp             CEEEEEETTSEEEEEETTTCC-------EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCc-------EEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence            799999999999999999998       99999999999999985      56777666544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-31  Score=224.53  Aligned_cols=265  Identities=13%  Similarity=0.156  Sum_probs=176.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEe-cccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      |+|+|+++ +||||+.||+|+|||+++              .+....+ .+|...|++++|+|++. + ++++.|+.+++
T Consensus        18 l~~s~dg~-~l~s~s~Dg~v~vWd~~~--------------~~~~~~~~~~h~~~v~~v~~~~~g~-~-~~~~~d~~v~~   80 (299)
T d1nr0a2          18 LSSSADGK-TLFSADAEGHINSWDIST--------------GISNRVFPDVHATMITGIKTTSKGD-L-FTVSWDDHLKV   80 (299)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTT--------------CCEEECSSCSCSSCEEEEEECTTSC-E-EEEETTTEEEE
T ss_pred             EEECCCCC-EEEEEcCCCeEEEEECCC--------------CcEEEEEcCCCCCcEEEEEeeccce-e-ecccceeeEEE
Confidence            57999997 899999999999999986              2444444 47999999999999998 5 47889999999


Q ss_pred             EEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceee
Q psy4577          80 LSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~  156 (384)
                      |+.......                   ..    ....+.....+.+++|+|++..++   ++.+++|+......  .. 
T Consensus        81 ~~~~~~~~~-------------------~~----~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~--~~-  134 (299)
T d1nr0a2          81 VPAGGSGVD-------------------SS----KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE--VP-  134 (299)
T ss_dssp             ECSSSSSSC-------------------TT----SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE--EE-
T ss_pred             eccCCcccc-------------------cc----ccccccccccccccccccccccccccccccccccccccccc--cc-
Confidence            998653110                   00    011122245677899999998776   77888887533211  11 


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                         .......+.+.|+..          .+..+..    ...+.+..+.                          .+...
T Consensus       135 ---~~~~~~~~~~s~~~~----------~l~~g~~----dg~i~~~d~~--------------------------~~~~~  171 (299)
T d1nr0a2         135 ---ISYNSSCVALSNDKQ----------FVAVGGQ----DSKVHVYKLS--------------------------GASVS  171 (299)
T ss_dssp             ---CSSCEEEEEECTTSC----------EEEEEET----TSEEEEEEEE--------------------------TTEEE
T ss_pred             ---ccccccccccccccc----------ccccccc----cccccccccc--------------------------ccccc
Confidence               111122233333221          1111111    1222222222                          12223


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ......|...|++++|+|++. +|++++.|+.|++||+...       ........+.+|..+|++++|+|++ .+|++|
T Consensus       172 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~-------~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~sg  242 (299)
T d1nr0a2         172 EVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANN-------FELAHTNSWTFHTAKVACVSWSPDN-VRLATG  242 (299)
T ss_dssp             EEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGT-------TEESCCCCCCCCSSCEEEEEECTTS-SEEEEE
T ss_pred             ccccccccccccccccccccc-ccccccccccccccccccc-------ccccccccccccccccccccccccc-cceEEE
Confidence            344567999999999999995 8999999999999998631       1222344677899999999999998 799999


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeec-cCCcEeEEEEecCCCcccccc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTG-HTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      +.||.|++||+++....     .+..... +...|+++.|. +++.+++.+
T Consensus       243 s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~v~~~~~~-~~~~l~s~s  287 (299)
T d1nr0a2         243 SLDNSVIVWNMNKPSDH-----PIIIKGAHAMSSVNSVIWL-NETTIVSAG  287 (299)
T ss_dssp             ETTSCEEEEETTCTTSC-----CEEETTSSTTSCEEEEEEE-ETTEEEEEE
T ss_pred             cCCCEEEEEECCCCCcc-----eEEEecCCCCCcEEEEEEC-CCCEEEEEe
Confidence            99999999999986521     2233333 45667777665 455655543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-29  Score=215.29  Aligned_cols=229  Identities=11%  Similarity=0.125  Sum_probs=165.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|+++ +||+|+.|++|++||+....            +.....+.+|...|.+++|+|++. ++++++.|+.|++|
T Consensus       103 v~~s~dg~-~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~  168 (337)
T d1gxra_         103 CKLLPDGC-TLIVGGEASTLSIWDLAAPT------------PRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVW  168 (337)
T ss_dssp             EEECTTSS-EEEEEESSSEEEEEECCCC--------------EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred             EEEcCCCC-EEEEeecccccccccccccc------------cccccccccccccccccccccccc-cccccccccccccc
Confidence            47999997 79999999999999987522            466777889999999999999999 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      ++.+++.             ..           ...+|  ...+.+++|++++..++    ++.+++||+++......  
T Consensus       169 ~~~~~~~-------------~~-----------~~~~~--~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~--  220 (337)
T d1gxra_         169 DLHNQTL-------------VR-----------QFQGH--TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--  220 (337)
T ss_dssp             ETTTTEE-------------EE-----------EECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--
T ss_pred             ccccccc-------------cc-----------ccccc--ccccccccccccccccccccccccccccccccceeecc--
Confidence            9977411             11           11223  56788999999998877    89999999876544222  


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                       .....++.++.+.|+                                     +..+.+...|.....|..    . ...
T Consensus       221 -~~~~~~i~~l~~~~~-------------------------------------~~~l~~~~~d~~i~i~d~----~-~~~  257 (337)
T d1gxra_         221 -HDFTSQIFSLGYCPT-------------------------------------GEWLAVGMESSNVEVLHV----N-KPD  257 (337)
T ss_dssp             -EECSSCEEEEEECTT-------------------------------------SSEEEEEETTSCEEEEET----T-SSC
T ss_pred             -cccccceEEEEEccc-------------------------------------ccccceeccccccccccc----c-ccc
Confidence             222222333434332                                     222222222222222211    0 111


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ......|...|++++|+|+++ +|++|+.||.|++||+.        .+.  .+.. .+|...|++++|+|++ ++|+||
T Consensus       258 ~~~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~--------~~~--~~~~-~~~~~~v~~~~~s~d~-~~l~t~  324 (337)
T d1gxra_         258 KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTP--------YGA--SIFQ-SKESSSVLSCDISVDD-KYIVTG  324 (337)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT--------TCC--EEEE-EECSSCEEEEEECTTS-CEEEEE
T ss_pred             cccccccccccceEEECCCCC-EEEEEeCCCeEEEEECC--------CCC--EEEE-ccCCCCEEEEEEeCCC-CEEEEE
Confidence            334567999999999999995 99999999999999986        332  3333 4588899999999998 799999


Q ss_pred             eCCCcEEEEec
Q psy4577         317 SDDHTICLWDI  327 (384)
Q Consensus       317 s~Dg~i~iwd~  327 (384)
                      +.||+|+|||+
T Consensus       325 s~D~~I~vWdl  335 (337)
T d1gxra_         325 SGDKKATVYEV  335 (337)
T ss_dssp             ETTSCEEEEEE
T ss_pred             eCCCeEEEEEE
Confidence            99999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=9.8e-30  Score=213.85  Aligned_cols=235  Identities=15%  Similarity=0.215  Sum_probs=157.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEec--CCeEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE--DNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~--D~~i~   78 (384)
                      ++|+|+|+ +||+|+.||+|+|||+....            ......+.+|.+.|.+++|+|+++ +|++++.  ++.++
T Consensus        64 ~~~sp~g~-~latg~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~  129 (311)
T d1nr0a1          64 AKTSPSGY-YCASGDVHGNVRIWDTTQTT------------HILKTTIPVFSGPVKDISWDSESK-RIAAVGEGRERFGH  129 (311)
T ss_dssp             EEECTTSS-EEEEEETTSEEEEEESSSTT------------CCEEEEEECSSSCEEEEEECTTSC-EEEEEECCSSCSEE
T ss_pred             EEEeCCCC-eEeccccCceEeeeeeeccc------------cccccccccccCcccccccccccc-cccccccccccccc
Confidence            47999997 89999999999999998632            234456789999999999999999 6667765  46799


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCcee-ee----cceeeeeccccccccc
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR-VI----NEEYKIWKKNTPFLYD  153 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~----d~~v~~w~~~~~~~~~  153 (384)
                      +|+++.++..                        ..+.+|  ...|.+++|+|++.. ++    |+.+++||.++.....
T Consensus       130 v~~~~~~~~~------------------------~~l~~h--~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~  183 (311)
T d1nr0a1         130 VFLFDTGTSN------------------------GNLTGQ--ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS  183 (311)
T ss_dssp             EEETTTCCBC------------------------BCCCCC--SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE
T ss_pred             cccccccccc------------------------cccccc--ccccccccccccceeeeccccccccccccccccccccc
Confidence            9998764211                        123344  567899999999986 33    8999999998765544


Q ss_pred             eeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC-
Q psy4577         154 LVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS-  232 (384)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-  232 (384)
                      ....+..  ++.++.+.|+.                                     ..+.....|.....|....... 
T Consensus       184 ~~~~~~~--~i~~v~~~p~~-------------------------------------~~l~~~~~d~~v~~~d~~~~~~~  224 (311)
T d1nr0a1         184 TFGEHTK--FVHSVRYNPDG-------------------------------------SLFASTGGDGTIVLYNGVDGTKT  224 (311)
T ss_dssp             EECCCSS--CEEEEEECTTS-------------------------------------SEEEEEETTSCEEEEETTTCCEE
T ss_pred             ccccccc--cccccccCccc-------------------------------------ccccccccccccccccccccccc
Confidence            4333322  23444454433                                     2222222222222111100000 


Q ss_pred             C--ceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCC---ceEEEEeCC
Q psy4577         233 G--KIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQK---EGYGLSWNP  307 (384)
Q Consensus       233 ~--~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~---~i~~~~~s~  307 (384)
                      .  ........+|.+.|++++|+|+++ +|++|+.||.|+|||++        ++.  .+.++..|..   .+.++.|+ 
T Consensus       225 ~~~~~~~~~~~~h~~~V~~~~~s~~~~-~l~tgs~Dg~v~iwd~~--------t~~--~~~~l~~~~~~~~~~~~~~~~-  292 (311)
T d1nr0a1         225 GVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVA--------TLK--VEKTIPVGTRIEDQQLGIIWT-  292 (311)
T ss_dssp             EECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETT--------TTE--EEEEEECCSSGGGCEEEEEEC-
T ss_pred             ccccccccccccccccccccccCCCCC-EEEEEeCCCeEEEEECC--------CCc--EEEEEECCCCccceEEEEEec-
Confidence            0  000011236889999999999995 99999999999999986        343  4456665543   44555554 


Q ss_pred             CCCCeEEEeeCCCcEEEEecC
Q psy4577         308 SLNGYLLSASDDHTICLWDIN  328 (384)
Q Consensus       308 ~~~~~l~s~s~Dg~i~iwd~~  328 (384)
                       + .+|++++.||.|++||.+
T Consensus       293 -~-~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         293 -K-QALVSISANGFINFVNPE  311 (311)
T ss_dssp             -S-SCEEEEETTCCEEEEETT
T ss_pred             -C-CEEEEEECCCEEEEEeCC
Confidence             4 479999999999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-29  Score=217.22  Aligned_cols=287  Identities=10%  Similarity=0.079  Sum_probs=173.1

Q ss_pred             CCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEc
Q psy4577           3 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSV   82 (384)
Q Consensus         3 fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~   82 (384)
                      ++++++ +||||+.||+|+|||+.+              .+++.++.+|.+.|++|+|+|++  +|++|+.|++|++|++
T Consensus        19 ~~~~~~-~l~tgs~Dg~i~vWd~~~--------------~~~~~~l~~H~~~V~~l~~s~~~--~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2          19 LQFEDN-YVITGADDKMIRVYDSIN--------------KKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEETT-EEEEEETTTEEEEEETTT--------------TEEEEEEECCSSCEEEEEEETTT--EEEEEETTCCEEEEET
T ss_pred             EEECCC-EEEEEeCCCeEEEEECCC--------------CcEEEEEECCCCCEEEEEEcCCC--EEEEEecccccccccc
Confidence            556775 899999999999999986              47888999999999999999864  5789999999999999


Q ss_pred             ccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceeecc
Q psy4577          83 VCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTH  158 (384)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~  158 (384)
                      ...+.             .........           ........+.+++..++    |+.+++|++............
T Consensus        82 ~~~~~-------------~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~  137 (355)
T d1nexb2          82 KKGCC-------------THVFEGHNS-----------TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE  137 (355)
T ss_dssp             TTTEE-------------EEEECCCSS-----------CEEEEEEEEETTEEEEEEEETTSEEEEEECCC----------
T ss_pred             ccccc-------------ccccccccc-----------cccccccccccccceeeeecCCCcEEEEEccCCceecccccc
Confidence            77411             111111100           12234567788887776    899999998654332111100


Q ss_pred             cc---------cccceeee----------eccCCC--CCCCCccceeEEEEeeecc---CCCCeEEEEEeecCCCCcccc
Q psy4577         159 AL---------EWPSLTAQ----------WLPDVT--RPEGKDYSIHRLILGTHTS---DEQNHLLIASVQLPNEDAQFD  214 (384)
Q Consensus       159 ~~---------~~~~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~  214 (384)
                      ..         ........          ..++..  .....+..+....+.+...   .......+..+.+++.+..+.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (355)
T d1nexb2         138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI  217 (355)
T ss_dssp             -CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred             ceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeee
Confidence            00         00000000          000000  0000000000000000000   001111223344445555555


Q ss_pred             cccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec
Q psy4577         215 ASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR  294 (384)
Q Consensus       215 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  294 (384)
                      ....|.....+.    ...........+|...|.++++++   ++|++|+.||.|++||++        ..    ...+.
T Consensus       218 ~~~~d~~i~i~d----~~~~~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~--------~~----~~~~~  278 (355)
T d1nexb2         218 SASMDTTIRIWD----LENGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDAN--------DY----SRKFS  278 (355)
T ss_dssp             EEETTSCEEEEE----TTTCCEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETT--------TC----CEEEE
T ss_pred             cccccceEEeee----cccccccccccccccccccccccc---ceeeeeeccccccccccc--------cc----ceecc
Confidence            555555444332    222334566778999999999975   489999999999999986        22    23456


Q ss_pred             CCCCceEEEE-eCCCCCCeEEEeeCCCcEEEEecCCCCCCCcccccee-eeeccCCcEeEEEEecC
Q psy4577         295 GHQKEGYGLS-WNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKT-IFTGHTAVVELELIERL  358 (384)
Q Consensus       295 ~h~~~i~~~~-~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~sp~  358 (384)
                      .|...+.++. +++++ .+|++| .||+|+|||+++++       ++. .+.+|..+|++++|+|+
T Consensus       279 ~~~~~~~~~~~~~~~~-~~l~~g-~d~~i~vwd~~tg~-------~~~~~~~~~~~~V~~v~~~~~  335 (355)
T d1nexb2         279 YHHTNLSAITTFYVSD-NILVSG-SENQFNIYNLRSGK-------LVHANILKDADQIWSVNFKGK  335 (355)
T ss_dssp             EECTTCCCCCEEEECS-SEEEEE-ETTEEEEEETTTCC-------BCCSCTTTTCSEEEEEEEETT
T ss_pred             cccCCceEEEEEcCCC-CEEEEE-eCCEEEEEECCCCC-------EEEEEecCCCCCEEEEEEcCC
Confidence            6777777664 45665 565555 58999999999987       664 56789999999999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.1e-29  Score=213.37  Aligned_cols=267  Identities=13%  Similarity=0.103  Sum_probs=166.6

Q ss_pred             CCCCCCCCceEEEeeCCC-eEEEeecCCcCcccccCCCCCCCCeeEEEeccc-ccceEEEEEccC--CCcEEEEEecCCe
Q psy4577           1 VQWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPN--EPWVICSVSEDNI   76 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh-~~~V~~l~~~~~--~~~~l~s~s~D~~   76 (384)
                      ++|+|++. .||.++.+. .|+.|+.....            ......+.+| ...|++++|+|+  +. +||||+.||+
T Consensus        23 l~~~~~~~-~la~~~~~~~~i~~~~~~~~~------------~~~~~~~~gh~~~~v~~v~fsP~~~g~-~lasgs~Dg~   88 (325)
T d1pgua1          23 LSYDPTTN-AIAYPCGKSAFVRCLDDGDSK------------VPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGK   88 (325)
T ss_dssp             CEEETTTT-EEEEEETTEEEEEECCSSCCS------------SCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSE
T ss_pred             EEECCCCC-EEEEEeCCCEEEEEEeCCCCC------------ccceEEEeCCCCCCEEEEEEeeCCCCC-EEEEEeCCCC
Confidence            57999997 577765443 35667654311            2345556777 467999999984  45 8899999999


Q ss_pred             EEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee------cceeeeecccccc
Q psy4577          77 MQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI------NEEYKIWKKNTPF  150 (384)
Q Consensus        77 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------d~~v~~w~~~~~~  150 (384)
                      |++||+..++.....             +..   .......  ...+|.+++|+++++.++      ++.+++|+.....
T Consensus        89 i~iWd~~~~~~~~~~-------------~~~---~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~  150 (325)
T d1pgua1          89 VIVWGWTFDKESNSV-------------EVN---VKSEFQV--LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN  150 (325)
T ss_dssp             EEEEEEEEEGGGTEE-------------EEE---EEEEEEC--CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC
T ss_pred             EEEeeecCCcceeee-------------ecc---ccccccc--ccCcEEEEEECCCCCccceeeccccceEEEEeecccc
Confidence            999999764221100             000   0001112  256799999999998876      4567777766554


Q ss_pred             ccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccc-cccccCcCCCCCCcc
Q psy4577         151 LYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFD-ASNYDTDKGDFGGFG  229 (384)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~d~~~~~~~~~~  229 (384)
                      ....+..+..  ++.++.|.++.                                     ...+ ....|.....|..  
T Consensus       151 ~~~~~~~h~~--~v~~~~~~~~~-------------------------------------~~~~~~~~~d~~v~~~d~--  189 (325)
T d1pgua1         151 SLGEVSGHSQ--RINACHLKQSR-------------------------------------PMRSMTVGDDGSVVFYQG--  189 (325)
T ss_dssp             EEEECCSCSS--CEEEEEECSSS-------------------------------------SCEEEEEETTTEEEEEET--
T ss_pred             cceeeeeccc--ccccccccccc-------------------------------------cceEEEeecccccccccc--
Confidence            4333332221  12334443332                                     1111 1111222211110  


Q ss_pred             CCCCceeE--EEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeC-
Q psy4577         230 SVSGKIEI--EIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWN-  306 (384)
Q Consensus       230 ~~~~~~~~--~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s-  306 (384)
                       ...+...  .....|...|.+++|+|++..+|++++.|+.|++||++        ++.  .+..+.+|..++.++.|+ 
T Consensus       190 -~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~--------~~~--~~~~l~~~~~~v~~~~~s~  258 (325)
T d1pgua1         190 -PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK--------SGE--FLKYIEDDQEPVQGGIFAL  258 (325)
T ss_dssp             -TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT--------TCC--EEEECCBTTBCCCSCEEEE
T ss_pred             -cccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec--------ccc--ccccccccccccccceeee
Confidence             0011111  11235778899999999865699999999999999986        333  456788888877666555 


Q ss_pred             --CCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCc--EeEEEEecCC
Q psy4577         307 --PSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAV--VELELIERLT  359 (384)
Q Consensus       307 --~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~sp~~  359 (384)
                        |++ .+|++++.|++|+|||+++++       ++..+..|...  +..+++.+.+
T Consensus       259 ~~~dg-~~l~s~s~D~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  307 (325)
T d1pgua1         259 SWLDS-QKFATVGADATIRVWDVTTSK-------CVQKWTLDKQQLGNQQVGVVATG  307 (325)
T ss_dssp             EESSS-SEEEEEETTSEEEEEETTTTE-------EEEEEECCTTCGGGCEEEEEEEE
T ss_pred             eccCC-CEEEEEeCCCeEEEEECCCCC-------EEEEEEecCCcccCeEEEEEECC
Confidence              677 799999999999999999988       88887765543  3444444433

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.7e-28  Score=211.83  Aligned_cols=213  Identities=14%  Similarity=0.147  Sum_probs=154.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|++. +||+|+.|++|+|||+....            ......+.+|...|++++|+|+++ .|++++.|+++++|
T Consensus        57 l~fsp~~~-~l~s~s~D~~i~vWd~~~~~------------~~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~  122 (371)
T d1k8kc_          57 VDWAPDSN-RIVTCGTDRNAYVWTLKGRT------------WKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISIC  122 (371)
T ss_dssp             EEEETTTT-EEEEEETTSCEEEEEEETTE------------EEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEE
T ss_pred             EEECCCCC-EEEEEECCCeEEEEeecccc------------cccccccccccccccccccccccc-cceeecccCcceee
Confidence            47999997 89999999999999997521            244556678999999999999999 78899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      ++......                    .........|  ...|.+++|+|+++.++    |+++++|+...........
T Consensus       123 ~~~~~~~~--------------------~~~~~~~~~~--~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~  180 (371)
T d1k8kc_         123 YFEQENDW--------------------WVCKHIKKPI--RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA  180 (371)
T ss_dssp             EEETTTTE--------------------EEEEEECTTC--CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred             eeeccccc--------------------cccccccccc--ccccccccccccccceeccccCcEEEEEeeccCccccccc
Confidence            98764110                    0000111122  56788999999999887    8999999875433211100


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      ..                                                          .++...         .....
T Consensus       181 ~~----------------------------------------------------------~~~~~~---------~~~~~  193 (371)
T d1k8kc_         181 PT----------------------------------------------------------PWGSKM---------PFGEL  193 (371)
T ss_dssp             CB----------------------------------------------------------TTBSCC---------CTTCE
T ss_pred             cc----------------------------------------------------------cccccc---------cceee
Confidence            00                                                          000000         00111


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                      ......|.+.|.+++|+|+++ +|++++.|+.|++||+.        .+  ..+..+.+|..+|.+++|+|++ .+|++|
T Consensus       194 ~~~~~~~~~~v~~~~~s~~g~-~l~s~~~d~~i~iwd~~--------~~--~~~~~~~~~~~~v~s~~fs~d~-~~la~g  261 (371)
T d1k8kc_         194 MFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADAD--------KK--MAVATLASETLPLLAVTFITES-SLVAAG  261 (371)
T ss_dssp             EEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGG--------GT--TEEEEEECSSCCEEEEEEEETT-EEEEEE
T ss_pred             eeeccCccCcEEEEEeecccc-cccccccCCcceEEeee--------cc--cceeeeecccccceeeeecCCC-CEEEEE
Confidence            334457889999999999995 89999999999999986        22  3566888999999999999998 576654


Q ss_pred             eCCCcEEEEecCC
Q psy4577         317 SDDHTICLWDINA  329 (384)
Q Consensus       317 s~Dg~i~iwd~~~  329 (384)
                       .|+.+++|....
T Consensus       262 -~d~~~~~~~~~~  273 (371)
T d1k8kc_         262 -HDCFPVLFTYDS  273 (371)
T ss_dssp             -TTSSCEEEEEET
T ss_pred             -cCCceEEEEeeC
Confidence             578888876544

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.4e-28  Score=208.94  Aligned_cols=287  Identities=9%  Similarity=0.038  Sum_probs=172.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|+++ +||+|+.||+|+|||+....           ....+....+|.++|++++|+|++..+|++|+.|++|++|
T Consensus        17 l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~-----------~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_          17 IKIIPSKS-LLLITSWDGSLTVYKFDIQA-----------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             EEEEGGGT-EEEEEETTSEEEEEEEETTT-----------TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             EEEeCCCC-EEEEEECCCeEEEEEccCCC-----------cceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence            58999997 89999999999999997522           1123344457999999999999877689999999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      ++......             .....           + .........+.++...++    ++++++||.+.........
T Consensus        85 ~~~~~~~~-------------~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~  139 (342)
T d1yfqa_          85 DLIGSPSF-------------QALTN-----------N-EANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             CSSSSSSE-------------EECBS-----------C-CCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             eccccccc-------------ccccc-----------c-ccccccccccccccccccccccccccceeeccccccceeee
Confidence            99764211             00000           0 011223344455554444    8999999986543322211


Q ss_pred             ccccc----ccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCC
Q psy4577         157 THALE----WPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVS  232 (384)
Q Consensus       157 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  232 (384)
                      .....    .......+.+..          ..+..+.    ....+.++.+.                ..        .
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~----~d~~i~~~~~~----------------~~--------~  181 (342)
T d1yfqa_         140 KNLNSNNTKVKNKIFTMDTNS----------SRLIVGM----NNSQVQWFRLP----------------LC--------E  181 (342)
T ss_dssp             EESCSSSSSSCCCEEEEEECS----------SEEEEEE----STTEEEEEESS----------------CC--------T
T ss_pred             cccccccccceeeeeeeeccC----------Cceeeec----CCCcEEEEecc----------------cC--------c
Confidence            11000    000000000000          0011111    01112222211                00        0


Q ss_pred             CceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCC-----ccceeeecCCCCceEEEEeCC
Q psy4577         233 GKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGE-----CHPDLRLRGHQKEGYGLSWNP  307 (384)
Q Consensus       233 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~h~~~i~~~~~s~  307 (384)
                      ..........+...+.+..+.+.....+++++.||.+.+|+.............     ........+|...|++++|+|
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp  261 (342)
T d1yfqa_         182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP  261 (342)
T ss_dssp             TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT
T ss_pred             ccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC
Confidence            111122233455566777777765568999999999999998643322110000     001112345777899999999


Q ss_pred             CCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCccccccccccc
Q psy4577         308 SLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKA  371 (384)
Q Consensus       308 ~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~  371 (384)
                      ++ .+||||+.||+|++||+++.+       .+.++..+ ..+..++|+|+++.++..+..+..
T Consensus       262 ~~-~~lasg~~Dg~v~vWD~~~~~-------~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~  316 (342)
T d1yfqa_         262 RH-KFLYTAGSDGIISCWNLQTRK-------KIKNFAKF-NEDSVVKIACSDNILCLATSDDTF  316 (342)
T ss_dssp             TT-CCEEEEETTSCEEEEETTTTE-------EEEECCCC-SSSEEEEEEECSSEEEEEEECTHH
T ss_pred             Cc-cEEEEECCCCEEEEEECCCCc-------EEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcE
Confidence            98 799999999999999999987       77777543 345567889999988776655443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.1e-28  Score=205.68  Aligned_cols=276  Identities=18%  Similarity=0.217  Sum_probs=171.7

Q ss_pred             CCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEc
Q psy4577           3 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSV   82 (384)
Q Consensus         3 fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~   82 (384)
                      ++++|+ +||||+.||+|+|||+.+              .+++.++.+|.+.|.+++|+|+   +|++++.|+++++|+.
T Consensus        23 ~~~~g~-~l~sgs~Dg~i~vWd~~~--------------~~~~~~~~~h~~~V~~v~~~~~---~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2          23 LQFCGN-RIVSGSDDNTLKVWSAVT--------------GKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNA   84 (342)
T ss_dssp             EEEETT-EEEEEETTSCEEEEETTT--------------CCEEEECCCCSSCEEEEEEETT---EEEEEETTSCEEEEET
T ss_pred             EEECCC-EEEEEeCCCeEEEEECCC--------------CCEEEEEeCCCCCEEEEEeCCC---ccccceeccccccccc
Confidence            567786 899999999999999986              4678889999999999999875   7889999999999998


Q ss_pred             ccCCCccch----------------hheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceee
Q psy4577          83 VCVEPFDDA----------------VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYK  142 (384)
Q Consensus        83 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~  142 (384)
                      .........                ......+..+.+|+.........+..    .......+.+....++    ++.++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG----HVAAVRCVQYDGRRVVSGAYDFMVK  160 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEEC----CSSCEEEEEECSSCEEEEETTSCEE
T ss_pred             ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeec----ccccceeeccccceeeeecCCCeEE
Confidence            764211000                00011223444554433322111111    1111222333333332    77788


Q ss_pred             eeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcC
Q psy4577         143 IWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDK  222 (384)
Q Consensus       143 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~  222 (384)
                      +|+.........+..+...  .....+                                       ++..+.....|...
T Consensus       161 ~~d~~~~~~~~~~~~~~~~--~~~~~~---------------------------------------~~~~l~s~~~dg~i  199 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTNR--VYSLQF---------------------------------------DGIHVVSGSLDTSI  199 (342)
T ss_dssp             EEEGGGTEEEEEECCCSSC--EEEEEE---------------------------------------CSSEEEEEETTSCE
T ss_pred             EeecccceeeEEEcCcccc--cccccC---------------------------------------CCCEEEEEeCCCeE
Confidence            8877654443322222111  000000                                       11122222223322


Q ss_pred             CCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcc-ceeeecCCCCceE
Q psy4577         223 GDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECH-PDLRLRGHQKEGY  301 (384)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~h~~~i~  301 (384)
                      ..|.    ......+.....|...+.++++++   ++|++|+.||.|++||+..        .... .+.....|...+.
T Consensus       200 ~~~d----~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~--------~~~~~~~~~~~~~~~~~~  264 (342)
T d2ovrb2         200 RVWD----VETGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKT--------GQCLQTLQGPNKHQSAVT  264 (342)
T ss_dssp             EEEE----TTTCCEEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTT--------CCEEEEECSTTSCSSCEE
T ss_pred             EEee----cccceeeeEecccccceeEEecCC---CEEEEEcCCCEEEEEeccc--------ccccccccccceeeecee
Confidence            2221    112223556678899999888765   4899999999999999862        2211 1222334666778


Q ss_pred             EEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee-----ccCCcEeEEEEecCCCcccccc
Q psy4577         302 GLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT-----GHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       302 ~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      ++.+++   .++++|+.||+|++||+++++       .++++.     +|...|++++|+|++..+++..
T Consensus       265 ~~~~~~---~~~~s~s~Dg~i~iwd~~tg~-------~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~  324 (342)
T d2ovrb2         265 CLQFNK---NFVITSSDDGTVKLWDLKTGE-------FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS  324 (342)
T ss_dssp             EEEECS---SEEEEEETTSEEEEEETTTCC-------EEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred             ecccCC---CeeEEEcCCCEEEEEECCCCC-------EEEEEecccCCCCCCCEEEEEECCCCCEEEEEe
Confidence            887764   589999999999999999988       776663     5888999999999987665543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=3.1e-28  Score=203.75  Aligned_cols=237  Identities=9%  Similarity=0.064  Sum_probs=161.5

Q ss_pred             eeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeecc
Q psy4577          43 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEW  122 (384)
Q Consensus        43 ~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (384)
                      ++.+++.||.+.|++|+|+|+++ +|+||+.||+|++||+.+++.             .+.          ...+|  ..
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~-------------~~~----------~~~~h--~~   56 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGIS-------------NRV----------FPDVH--AT   56 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCE-------------EEC----------SSCSC--SS
T ss_pred             ccceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcE-------------EEE----------EcCCC--CC
Confidence            67788999999999999999999 788999999999999987521             111          11123  56


Q ss_pred             CeeEEEEecCceeee---cceeeeecccccccccee-ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577         123 PSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLV-MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH  198 (384)
Q Consensus       123 ~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (384)
                      .|.+++|+|++..++   |+.+++|+.......... ...........+.+                             
T Consensus        57 ~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  107 (299)
T d1nr0a2          57 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV-----------------------------  107 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE-----------------------------
T ss_pred             cEEEEEeeccceeecccceeeEEEeccCCcccccccccccccccccccccc-----------------------------
Confidence            789999999998765   899999987553321110 00000111112222                             


Q ss_pred             EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q psy4577         199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP  278 (384)
Q Consensus       199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~  278 (384)
                              ++++.. .+...+.....|..     .   ..........+.+++|+|++. +|++|+.||.|++||++   
T Consensus       108 --------s~~g~~-~~~~~~~~i~~~~~-----~---~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~~~d~~---  166 (299)
T d1nr0a2         108 --------SADGDI-AVAACYKHIAIYSH-----G---KLTEVPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLS---  166 (299)
T ss_dssp             --------CTTSSC-EEEEESSEEEEEET-----T---EEEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEEEE---
T ss_pred             --------cccccc-cccccccccccccc-----c---ccccccccccccccccccccc-ccccccccccccccccc---
Confidence                    222211 11111111111100     0   111223456688999999995 99999999999999996   


Q ss_pred             CCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecC
Q psy4577         279 SKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERL  358 (384)
Q Consensus       279 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  358 (384)
                           .+... ......|..+|++++|+|++ .+|++++.|+.|++||+.++.    .+.....+.+|...|++++|+|+
T Consensus       167 -----~~~~~-~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~----~~~~~~~~~~h~~~v~~l~~s~~  235 (299)
T d1nr0a2         167 -----GASVS-EVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNF----ELAHTNSWTFHTAKVACVSWSPD  235 (299)
T ss_dssp             -----TTEEE-EEEEEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTT----EESCCCCCCCCSSCEEEEEECTT
T ss_pred             -----ccccc-cccccccccccccccccccc-ccccccccccccccccccccc----ccccccccccccccccccccccc
Confidence                 33322 23455789999999999998 799999999999999998765    12234556789999999999999


Q ss_pred             CCcccccc
Q psy4577         359 TKKADPVC  366 (384)
Q Consensus       359 ~~~~~~~c  366 (384)
                      ++.+++.+
T Consensus       236 ~~~l~sgs  243 (299)
T d1nr0a2         236 NVRLATGS  243 (299)
T ss_dssp             SSEEEEEE
T ss_pred             ccceEEEc
Confidence            99877653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.6e-28  Score=204.36  Aligned_cols=251  Identities=17%  Similarity=0.208  Sum_probs=161.8

Q ss_pred             EEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccc
Q psy4577          11 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDD   90 (384)
Q Consensus        11 lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~   90 (384)
                      |+||+.||+|++||+.+                   ...+|...|.+++|++++.  +++++.|+++++|++...+    
T Consensus        24 l~sgs~Dg~v~~Wd~~~-------------------~~~~h~~~V~~~~~~~~~~--~~s~s~D~~v~~w~~~~~~----   78 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSS-------------------MHQDHSNLIVSLDNSKAQE--YSSISWDDTLKVNGITKHE----   78 (287)
T ss_dssp             TEEEETTSCEEETTTTE-------------------EECCCCSCEEEEECCSTTC--CEEEETTTEEEETTEEEEE----
T ss_pred             EEEEeCCCeEEEEECCC-------------------CCCCCCCCEEEEEecCCCe--EEEEeeccccccccccccc----
Confidence            88999999999999864                   1257888999999987655  5689999999999875420    


Q ss_pred             hhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeeccccccccceeecccccccceee
Q psy4577          91 AVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMTHALEWPSLTA  167 (384)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~  167 (384)
                                                   ....+..+++.+++..++   ++.+.+|+.........+..   ..++..+
T Consensus        79 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  126 (287)
T d1pgua2          79 -----------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL---NSPGSAV  126 (287)
T ss_dssp             -----------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEE
T ss_pred             -----------------------------cccceeeeeeccCCceEEEeecccceeeeccceeeeeeccc---cceeeee
Confidence                                         012244567777776665   66667776655443322211   1111111


Q ss_pred             eeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCce
Q psy4577         168 QWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEV  247 (384)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v  247 (384)
                      ..  ..          ..+.++...   .+.+.++.+.                          ...........|.+.+
T Consensus       127 ~~--~~----------~~~~v~~~~---~~~v~~~~~~--------------------------~~~~~~~~~~~~~~~v  165 (287)
T d1pgua2         127 SL--SQ----------NYVAVGLEE---GNTIQVFKLS--------------------------DLEVSFDLKTPLRAKP  165 (287)
T ss_dssp             EE--CS----------SEEEEEETT---TSCEEEEETT--------------------------EEEEEEECSSCCSSCE
T ss_pred             ec--cC----------cceeeeccc---cceeeeeecc--------------------------ccceeeeeeeccCCce
Confidence            11  00          011111110   1111111110                          0111122233577889


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCC---------CCeEEEeeC
Q psy4577         248 NRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSL---------NGYLLSASD  318 (384)
Q Consensus       248 ~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~---------~~~l~s~s~  318 (384)
                      ++++|+|++. +|++|+.||.|++||+.        .+. .....+.+|..+|.+++|+|.+         ..+|+||+.
T Consensus       166 ~~~~~s~~~~-~l~~g~~dg~i~i~d~~--------~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~  235 (287)
T d1pgua2         166 SYISISPSET-YIAAGDVMGKILLYDLQ--------SRE-VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL  235 (287)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEETT--------TTE-EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET
T ss_pred             eEEEeccCcc-ccccccccccccceeec--------ccc-cccccccccccccceeeecccccccccccCCCCeeEeecC
Confidence            9999999995 99999999999999985        222 2233567899999999999753         258999999


Q ss_pred             CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccccccccceeeEE
Q psy4577         319 DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVCTLEKAKKKKEV  377 (384)
Q Consensus       319 Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~~~~~~~  377 (384)
                      |++|+|||++...+      .+..+.+|...|++++|+|++. +.+ |..+...+-++|
T Consensus       236 D~~i~iw~~~~~~~------~~~~~~~h~~~V~~v~~~~~~~-l~s-~g~D~~v~iW~i  286 (287)
T d1pgua2         236 DTNIFIYSVKRPMK------IIKALNAHKDGVNNLLWETPST-LVS-SGADACIKRWNV  286 (287)
T ss_dssp             TSCEEEEESSCTTC------CEEETTSSTTCEEEEEEEETTE-EEE-EETTSCEEEEEE
T ss_pred             CCeEEEEECCCCCe------EEEEeCCCCCCeEEEEECCCCE-EEE-EECCCeEEEEEE
Confidence            99999999987442      7777889999999999999874 333 444444444443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.7e-27  Score=206.73  Aligned_cols=236  Identities=19%  Similarity=0.296  Sum_probs=162.1

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|+|++. +||+|+.||.|++||...              .+.+....+|...|.+++|++++. .+++++.++.+++|
T Consensus       127 l~~s~~~~-~l~s~~~dg~v~i~~~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~  190 (388)
T d1erja_         127 VCFSPDGK-FLATGAEDRLIRIWDIEN--------------RKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIW  190 (388)
T ss_dssp             EEECTTSS-EEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEE
T ss_pred             EEECCCCC-cceecccccccccccccc--------------cccccccccccccccccccccccc-cccccccceeeeee
Confidence            47999997 899999999999999986              467778899999999999999998 77899999999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEec-Cceeee----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP-DVTRVI----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~----d~~v~~w~~~~~~~~~~~  155 (384)
                      |......             .....              ......++.+.+ ++..++    |+.+++|+.........+
T Consensus       191 d~~~~~~-------------~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~  243 (388)
T d1erja_         191 DLRTGQC-------------SLTLS--------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL  243 (388)
T ss_dssp             ETTTTEE-------------EEEEE--------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ecccccc-------------ccccc--------------cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceee
Confidence            9976411             11000              122344555555 566665    899999998765543322


Q ss_pred             eccc-----ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCcc-
Q psy4577         156 MTHA-----LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFG-  229 (384)
Q Consensus       156 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~-  229 (384)
                      ....     ...++.++.|.+                                     ++..+.+...|.....|.... 
T Consensus       244 ~~~~~~~~~h~~~v~~l~~s~-------------------------------------~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         244 DSENESGTGHKDSVYSVVFTR-------------------------------------DGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             C------CCCSSCEEEEEECT-------------------------------------TSSEEEEEETTSEEEEEEC---
T ss_pred             ccccccccCCCCCEEEEEECC-------------------------------------CCCEEEEEECCCcEEEEeccCC
Confidence            1111     011122333333                                     322222222222222221100 


Q ss_pred             -------CCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEE
Q psy4577         230 -------SVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYG  302 (384)
Q Consensus       230 -------~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~  302 (384)
                             .............|...|.+++|+|+++ +|++|+.||.|++||++        ++  +++..+.+|.+.|++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~--------~~--~~~~~l~~H~~~V~~  355 (388)
T d1erja_         287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKK--------SG--NPLLMLQGHRNSVIS  355 (388)
T ss_dssp             ------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETT--------TC--CEEEEEECCSSCEEE
T ss_pred             ccccccccccccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEEEECC--------CC--cEEEEEeCCCCCEEE
Confidence                   0011122445567899999999999995 99999999999999986        33  356789999999999


Q ss_pred             EE------eCCCCCCeEEEeeCCCcEEEEecC
Q psy4577         303 LS------WNPSLNGYLLSASDDHTICLWDIN  328 (384)
Q Consensus       303 ~~------~s~~~~~~l~s~s~Dg~i~iwd~~  328 (384)
                      ++      |+|++ .+||||+.||+|+|||++
T Consensus       356 ~~~~~~~~~spd~-~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         356 VAVANGSSLGPEY-NVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEECSSCTTCTTC-EEEEEEETTSEEEEEEEE
T ss_pred             EEEecCcccCCCC-CEEEEEeCCCEEEEEeee
Confidence            87      46787 799999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.4e-27  Score=197.53  Aligned_cols=235  Identities=18%  Similarity=0.191  Sum_probs=170.1

Q ss_pred             EEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCe
Q psy4577          45 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPS  124 (384)
Q Consensus        45 ~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  124 (384)
                      ..++.||.++|++|+|+|+++ +|+||+.||+|+|||+.+++..                        ..+.+|  ...|
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~------------------------~~~~~h--~~~V   62 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFE------------------------RTLKGH--TDSV   62 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCC------------------------EEECCC--SSCE
T ss_pred             cEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEE------------------------EEEeCC--CCcE
Confidence            456789999999999999999 8899999999999999875221                        123344  5679


Q ss_pred             eEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEE
Q psy4577         125 LTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLL  200 (384)
Q Consensus       125 ~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (384)
                      .+++|+|++..++    ++.+..|+............+...                                       
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------  103 (317)
T d1vyhc1          63 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN---------------------------------------  103 (317)
T ss_dssp             EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC---------------------------------------
T ss_pred             EEEeeeccccccccccccccccccccccccccccccccccc---------------------------------------
Confidence            9999999998887    666677766544332222221111                                       


Q ss_pred             EEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC
Q psy4577         201 IASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK  280 (384)
Q Consensus       201 i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~  280 (384)
                      +..+.+.+++..+.....|.....|..    ........+..|...+.+++|+|++. +|++++.|+.|++|+++     
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~~~~~~-----  173 (317)
T d1vyhc1         104 VSSVSIMPNGDHIVSASRDKTIKMWEV----QTGYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVA-----  173 (317)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEET----TTCCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-----
T ss_pred             ceeeeccCCCceEEeeccCcceeEeec----ccceeeeEEccCCCcceeeecccCCC-EEEEEeCCCeEEEEeec-----
Confidence            112222222222222233332222211    11223555678999999999999995 99999999999999986     


Q ss_pred             CCCCCCccceeeecCCCCceEEEEeCCCCC-------------------CeEEEeeCCCcEEEEecCCCCCCCcccccee
Q psy4577         281 PDPNGECHPDLRLRGHQKEGYGLSWNPSLN-------------------GYLLSASDDHTICLWDINATPKENRVIDAKT  341 (384)
Q Consensus       281 ~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~-------------------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  341 (384)
                         .+  .....+.+|...+.+++|+|++.                   .++++++.|+.|++||+++++       ++.
T Consensus       174 ---~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-------~~~  241 (317)
T d1vyhc1         174 ---TK--ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-------CLM  241 (317)
T ss_dssp             ---TC--CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-------EEE
T ss_pred             ---cc--eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc-------EEE
Confidence               22  34567889999999999988642                   368999999999999999988       999


Q ss_pred             eeeccCCcEeEEEEecCCCccccccc
Q psy4577         342 IFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       342 ~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      ++.+|...|++++|+|+++.+++.+.
T Consensus       242 ~~~~~~~~v~~~~~~~~~~~l~s~~~  267 (317)
T d1vyhc1         242 TLVGHDNWVRGVLFHSGGKFILSCAD  267 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             EEeCCCCCEEEEEECCCCCEEEEEEC
Confidence            99999999999999999998776543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6e-28  Score=209.98  Aligned_cols=301  Identities=16%  Similarity=0.176  Sum_probs=171.4

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEE------EccCCCcEEEEEecCCeEEEEEcc
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS------WNPNEPWVICSVSEDNIMQILSVV   83 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~------~~~~~~~~l~s~s~D~~i~vwd~~   83 (384)
                      +|+|||.|++|+|||..+...        ..+.........|...+..+.      ++.....++++++.||+|++|++.
T Consensus        26 ~l~S~S~D~~iriWd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~   97 (393)
T d1sq9a_          26 FTVSCSGDGYLKVWDNKLLDN--------ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRIT   97 (393)
T ss_dssp             EEEEEETTSEEEEEESBCCTT--------CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEE
T ss_pred             EEEEEECCCeEEEEECCCCCC--------CcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEcc
Confidence            799999999999999865321        111222333334544433332      222223368899999999999987


Q ss_pred             cCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCc-----eeee----cceeeeeccccccccce
Q psy4577          84 CVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV-----TRVI----NEEYKIWKKNTPFLYDL  154 (384)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~----d~~v~~w~~~~~~~~~~  154 (384)
                      .........            .....    .+........+.+++|.++.     ..++    |+++++|++........
T Consensus        98 ~~~~~~~~~------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~  161 (393)
T d1sq9a_          98 REDETKKVI------------FEKLD----LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  161 (393)
T ss_dssp             ECTTTCCEE------------EEEEC----CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             CCCceeeee------------ccccc----eeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence            642211000            00000    01111123456677787764     3333    89999998753221100


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      ....... +.....                    +...........+.++.+++++ .+.....|...+.|+..   .++
T Consensus       162 ~~~~~~~-~~~~~~--------------------~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~---~~~  216 (393)
T d1sq9a_         162 SLTLNWS-PTLELQ--------------------GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS---TLR  216 (393)
T ss_dssp             HTTTCCC-CEEEEE--------------------EEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT---TTE
T ss_pred             eeeeeec-cceecc--------------------cceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeec---ccc
Confidence            0000000 000000                    0000001111123344444443 33344455555544321   111


Q ss_pred             ee-----EEEEeecCCceEEEEEcCCCCcEEEEEeCCCc---EEEEecCCCCCCC---CCCCCccceeeecCCCCceEEE
Q psy4577         235 IE-----IEIKINHEGEVNRARYMPQNPCVIATKTPSSD---VLVFDYTKHPSKP---DPNGECHPDLRLRGHQKEGYGL  303 (384)
Q Consensus       235 ~~-----~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~---i~iwd~~~~~~~~---~~~~~~~~~~~~~~h~~~i~~~  303 (384)
                      ..     ...+.+|...|++++|+|+++ +|++|+.|++   |++||+.......   ...........+.+|.+.|+++
T Consensus       217 ~~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l  295 (393)
T d1sq9a_         217 PLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL  295 (393)
T ss_dssp             EEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE
T ss_pred             cccccccccccccccceEEEcccccccc-eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeee
Confidence            11     123457999999999999995 9999998875   8999986211000   0001111223456899999999


Q ss_pred             EeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEe----EEEEecCCCcccccccc
Q psy4577         304 SWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVE----LELIERLTKKADPVCTL  368 (384)
Q Consensus       304 ~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~----~~~~sp~~~~~~~~c~~  368 (384)
                      +|+|++ ++|+|||.|++|+|||+++++       ++.++++|...|.    .++|+|++..+++...+
T Consensus       296 ~fspd~-~~l~S~s~D~~v~vWd~~~g~-------~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~  356 (393)
T d1sq9a_         296 SFNDSG-ETLCSAGWDGKLRFWDVKTKE-------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF  356 (393)
T ss_dssp             EECSSS-SEEEEEETTSEEEEEETTTTE-------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEE
T ss_pred             ccCCCC-CeeEEECCCCEEEEEECCCCC-------EEEEECCcCCcccCCccEEEECCCCCEEEEcccc
Confidence            999998 799999999999999999998       9999999998876    48899999887765433

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.8e-26  Score=187.11  Aligned_cols=260  Identities=14%  Similarity=0.186  Sum_probs=152.3

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      +++++++ +||||+.||+|+|||+.+              .+++.++.+|.+.|++|+|+  ++ +|+||+.|++|++|+
T Consensus        20 c~~~d~~-~l~sgs~Dg~i~vWd~~~--------------~~~~~~l~~H~~~V~~v~~~--~~-~l~s~s~D~~i~~~~   81 (293)
T d1p22a2          20 CLQYDDQ-KIVSGLRDNTIKIWDKNT--------------LECKRILTGHTGSVLCLQYD--ER-VIITGSSDSTVRVWD   81 (293)
T ss_dssp             EEECCSS-EEEEEESSSCEEEEESSS--------------CCEEEEECCCSSCEEEEECC--SS-EEEEEETTSCEEEEE
T ss_pred             EEEEcCC-EEEEEeCCCeEEEEECCC--------------CcEEEEEecCCCCEeeeecc--cc-eeecccccccccccc
Confidence            3677886 899999999999999986              47788899999999999884  55 789999999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeeecceeeeeccccc---cccceeecc
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVINEEYKIWKKNTP---FLYDLVMTH  158 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~v~~w~~~~~---~~~~~~~~~  158 (384)
                      +..+........             .....   . ....... ..+...      .++.+++|+....   ........+
T Consensus        82 ~~~~~~~~~~~~-------------~~~~~---~-~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  137 (293)
T d1p22a2          82 VNTGEMLNTLIH-------------HCEAV---L-HLRFNNG-MMVTCS------KDRSIAVWDMASPTDITLRRVLVGH  137 (293)
T ss_dssp             SSSCCEEEEECC-------------CCSCE---E-EEECCTT-EEEEEE------TTSCEEEEECSSSSCCEEEEEECCC
T ss_pred             cccccccccccc-------------ccccc---c-ccccccc-ceeecc------cccceeEeecccccccccccccccc
Confidence            987632111000             00000   0 0000000 011111      1234444544321   111111111


Q ss_pred             cccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEE
Q psy4577         159 ALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIE  238 (384)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  238 (384)
                      ..  .+....+.+..            +....    ....+.+                ||..           ......
T Consensus       138 ~~--~v~~~~~~~~~------------~~~~s----~d~~i~~----------------~d~~-----------~~~~~~  172 (293)
T d1p22a2         138 RA--AVNVVDFDDKY------------IVSAS----GDRTIKV----------------WNTS-----------TCEFVR  172 (293)
T ss_dssp             SS--CEEEEEEETTE------------EEEEE----TTSEEEE----------------EETT-----------TCCEEE
T ss_pred             cc--ccccceecccc------------ccccc----CCCceee----------------ecCC-----------CCcEEE
Confidence            11  01111111000            00000    0111111                1111           111244


Q ss_pred             EEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC
Q psy4577         239 IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD  318 (384)
Q Consensus       239 ~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~  318 (384)
                      ...++...+..+.+++   ..+++++.||.|++||++        ..  ..+..+.+|...+..+  ++++ .+|++|+.
T Consensus       173 ~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~--------~~--~~~~~~~~~~~~v~~~--~~~~-~~l~sg~~  236 (293)
T d1p22a2         173 TLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIE--------CG--ACLRVLEGHEELVRCI--RFDN-KRIVSGAY  236 (293)
T ss_dssp             EEECCSSCEEEEEEET---TEEEEEETTSCEEEEETT--------TC--CEEEEECCCSSCEEEE--ECCS-SEEEEEET
T ss_pred             EEcccccccccccCCC---CeEEEecCCCEEEEEecc--------cc--eeeeeecccceeeeec--cccc-eEEEEEcC
Confidence            4556777888887754   479999999999999986        22  3456778888888764  4565 69999999


Q ss_pred             CCcEEEEecCCCCCC--CccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         319 DHTICLWDINATPKE--NRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       319 Dg~i~iwd~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      ||.|++||+......  .....++.++.+|.+.|++++|+  +..+++.+
T Consensus       237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s  284 (293)
T d1p22a2         237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSS  284 (293)
T ss_dssp             TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECC
T ss_pred             CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEe
Confidence            999999998654321  11123678889999999999995  44555443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=4.1e-25  Score=187.60  Aligned_cols=239  Identities=16%  Similarity=0.132  Sum_probs=163.3

Q ss_pred             CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec
Q psy4577          42 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE  121 (384)
Q Consensus        42 ~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (384)
                      .+..+++.||.+.|++|+|+|+++ +||||+.||+|+|||+.+++             .+.           .+.+|  .
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~-------------~~~-----------~~~~~--~   97 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTN-------------KVH-----------AIPLR--S   97 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTE-------------EEE-----------EEECS--C
T ss_pred             eeeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccce-------------eEE-----------EEecc--c
Confidence            356788999999999999999999 88999999999999998751             111           22333  5


Q ss_pred             cCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCC
Q psy4577         122 WPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQN  197 (384)
Q Consensus       122 ~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (384)
                      .+|.+++|+|++..++    ++.+++|+............. ..          ..      ... ........    ..
T Consensus        98 ~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~-~~----------~~------~~~-~~~~~~~~----~~  155 (340)
T d1tbga_          98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE-LA----------GH------TGY-LSCCRFLD----DN  155 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEE-EC----------CC------SSC-EEEEEEEE----TT
T ss_pred             ccEEeeEeeccceeeeeecccceeeccccccccccccccee-cc----------cc------ccc-cccccccc----cc
Confidence            6799999999999887    888999887543321110000 00          00      000 00000000    00


Q ss_pred             eEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q psy4577         198 HLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKH  277 (384)
Q Consensus       198 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~  277 (384)
                                    .......+.....    ..............+...+....+.+.+. ++++|+.|+.|++||++  
T Consensus       156 --------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~--  214 (340)
T d1tbga_         156 --------------QIVTSSGDTTCAL----WDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVR--  214 (340)
T ss_dssp             --------------EEEEEETTTEEEE----EETTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTTEEEEEETT--
T ss_pred             --------------ccccccccccccc----cccccccccccccccceeEeeeccccccc-eeEEeecCceEEEEECC--
Confidence                          0000000100000    00011222444556778899999999885 99999999999999986  


Q ss_pred             CCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeee--eccCCcEeEEEE
Q psy4577         278 PSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIF--TGHTAVVELELI  355 (384)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~  355 (384)
                            .+  .++..+.+|...|++++|+|++ .+|++|+.||.|++||++...       .+..+  ..|...|++++|
T Consensus       215 ------~~--~~~~~~~~h~~~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~  278 (340)
T d1tbga_         215 ------EG--MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ-------ELMTYSHDNIICGITSVSF  278 (340)
T ss_dssp             ------TT--EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE-------EEEEECCTTCCSCEEEEEE
T ss_pred             ------CC--cEEEEEeCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeecccc-------cccccccccccCceEEEEE
Confidence                  33  3566889999999999999998 799999999999999999876       55554  357778999999


Q ss_pred             ecCCCcccccc
Q psy4577         356 ERLTKKADPVC  366 (384)
Q Consensus       356 sp~~~~~~~~c  366 (384)
                      +|+++.+++.+
T Consensus       279 s~~~~~l~~g~  289 (340)
T d1tbga_         279 SKSGRLLLAGY  289 (340)
T ss_dssp             CSSSCEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence            99999877654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.4e-26  Score=192.78  Aligned_cols=244  Identities=17%  Similarity=0.181  Sum_probs=148.9

Q ss_pred             CCCCCCC-CceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEe--cCCeE
Q psy4577           1 VQWSPHN-ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS--EDNIM   77 (384)
Q Consensus         1 v~fsp~~-~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s--~D~~i   77 (384)
                      ++|+|+. ..+||+|+.||+|+|||+........      ........+..|.++|.+++|+++++ .|++++  .|+.+
T Consensus        69 v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~~~~~~~  141 (325)
T d1pgua1          69 VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS------VEVNVKSEFQVLAGPISDISWDFEGR-RLCVVGEGRDNFG  141 (325)
T ss_dssp             EEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE------EEEEEEEEEECCSSCEEEEEECTTSS-EEEEEECCSSCSE
T ss_pred             EEEeeCCCCCEEEEEeCCCCEEEeeecCCcceee------eecccccccccccCcEEEEEECCCCC-ccceeeccccceE
Confidence            4789843 24899999999999999875321100      00112234567889999999999999 444554  46789


Q ss_pred             EEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccc
Q psy4577          78 QILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLY  152 (384)
Q Consensus        78 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~  152 (384)
                      ++|+.++++.             +           ..+.+|  ...+.+++|+|++..++     |+.+++|+.......
T Consensus       142 ~~~~~~~~~~-------------~-----------~~~~~h--~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~  195 (325)
T d1pgua1         142 VFISWDSGNS-------------L-----------GEVSGH--SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS  195 (325)
T ss_dssp             EEEETTTCCE-------------E-----------EECCSC--SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE
T ss_pred             EEEeeccccc-------------c-----------eeeeec--ccccccccccccccceEEEeecccccccccccccccc
Confidence            9999876411             1           122334  56789999999987543     899999998654443


Q ss_pred             ceeeccc-ccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcc-cccccccCcCCCCCCccC
Q psy4577         153 DLVMTHA-LEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQ-FDASNYDTDKGDFGGFGS  230 (384)
Q Consensus       153 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~  230 (384)
                      .....+. ...                                     .+.++.++++.+. +.....|.....|+.   
T Consensus       196 ~~~~~~~~~~~-------------------------------------~v~~v~~~pd~~~~l~s~~~d~~i~iwd~---  235 (325)
T d1pgua1         196 ASDRTHHKQGS-------------------------------------FVRDVEFSPDSGEFVITVGSDRKISCFDG---  235 (325)
T ss_dssp             EEECSSSCTTC-------------------------------------CEEEEEECSTTCCEEEEEETTCCEEEEET---
T ss_pred             eecccccCCCC-------------------------------------ccEEeeeccccceeccccccccceeeeee---
Confidence            3222211 111                                     2333334333222 222233443333321   


Q ss_pred             CCCceeEEEEeecCCceEEEEEc---CCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC
Q psy4577         231 VSGKIEIEIKINHEGEVNRARYM---PQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP  307 (384)
Q Consensus       231 ~~~~~~~~~~~~~~~~v~~v~~~---p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~  307 (384)
                       .....+..+.+|...+.++.|+   |+++ +|++++.|+.|+|||++        .+.........+|...+..+++.+
T Consensus       236 -~~~~~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~--------~~~~~~~~~~~~~~~~~~~~~~~~  305 (325)
T d1pgua1         236 -KSGEFLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVT--------TSKCVQKWTLDKQQLGNQQVGVVA  305 (325)
T ss_dssp             -TTCCEEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETT--------TTEEEEEEECCTTCGGGCEEEEEE
T ss_pred             -ccccccccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECC--------CCCEEEEEEecCCcccCeEEEEEE
Confidence             1112244455677766655555   6775 89999999999999986        444333223333443444555544


Q ss_pred             CCCCeEEEeeCCCcEEEEec
Q psy4577         308 SLNGYLLSASDDHTICLWDI  327 (384)
Q Consensus       308 ~~~~~l~s~s~Dg~i~iwd~  327 (384)
                      .+..+|+|||.||+|++||+
T Consensus       306 ~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         306 TGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EETTEEEEEETTSCEEEEET
T ss_pred             CCCCEEEEEECCCEEEEEEC
Confidence            33258999999999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=2.7e-24  Score=188.65  Aligned_cols=287  Identities=12%  Similarity=0.077  Sum_probs=172.1

Q ss_pred             CCCCCCce-EEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           3 WSPHNETI-LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         3 fsp~~~~~-lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      ++++...+ +++++.||+|+|||+.+              .+++.++..|. .+.+++|+|||+ +|++++.|++|++||
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t--------------~~~~~~l~~g~-~~~~vafSPDGk-~l~~~~~d~~v~vwd   89 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDS--------------KKIVKVIDTGY-AVHISRMSASGR-YLLVIGRDARIDMID   89 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTT--------------CSEEEEEECCS-SEEEEEECTTSC-EEEEEETTSEEEEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCC--------------CcEEEEEeCCC-CeeEEEECCCCC-EEEEEeCCCCEEEEE
Confidence            45554444 57788899999999987              47778888775 699999999999 778999999999999


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceee
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~  156 (384)
                      +.+++..             ...+        ...+......+.+++|+|||++++     ++.+++||...........
T Consensus        90 ~~t~~~~-------------~~~~--------i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~  148 (426)
T d1hzua2          90 LWAKEPT-------------KVAE--------IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS  148 (426)
T ss_dssp             TTSSSCE-------------EEEE--------EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE
T ss_pred             ccCCcee-------------EEEE--------EeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEee
Confidence            9875221             0000        111111244466788999999875     8899999988776655444


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      .+.....  ...+.++..         ........    .....+....   ....+....            .......
T Consensus       149 ~~~~~~~--~~~~~~~~~---------~~~i~~s~----d~~~~~~~~~---~~~~i~~~~------------~~~~~~~  198 (426)
T d1hzua2         149 TRGMTVD--TQTYHPEPR---------VAAIIASH----EHPEFIVNVK---ETGKVLLVN------------YKDIDNL  198 (426)
T ss_dssp             CCEECSS--SCCEESCCC---------EEEEEECS----SSSEEEEEET---TTTEEEEEE------------CSSSSSC
T ss_pred             ccCCCcc--ceeecCCCc---------eeEEEECC----CCCEEEEecC---CCCeEEEEE------------eccccce
Confidence            3322111  111111110         00000000    0001111110   000000000            0001111


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCC--------C---------------------------
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSK--------P---------------------------  281 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~--------~---------------------------  281 (384)
                      ......+...+..+.|+|+++.++++...+..+.+++.......        .                           
T Consensus       199 ~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  278 (426)
T d1hzua2         199 TVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI  278 (426)
T ss_dssp             EEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEE
T ss_pred             eeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceE
Confidence            33344667777888888888655555555556666665421100        0                           


Q ss_pred             ---------CCCCCccceeeecCCCCceEEEEeCCCCCCeEE-------EeeCCCcEEEEecCCCCCCCccccceeee--
Q psy4577         282 ---------DPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL-------SASDDHTICLWDINATPKENRVIDAKTIF--  343 (384)
Q Consensus       282 ---------~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~-------s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~--  343 (384)
                               ......+....+.+|...+..++|+|++ ++|+       +++.|++|+|||+++++       .+.++  
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg-~~l~v~~~~~~s~~~~~tv~vwd~~t~~-------~~~~~~~  350 (426)
T d1hzua2         279 SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLD-------AKYQVLP  350 (426)
T ss_dssp             EEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC-SEEEECCTTCSSHHHHTCEEEEETTCTT-------SCCEEEC
T ss_pred             EEeeccccccccccceEeEEEecCCCceeEEEcCCCC-ceEEEeecCCCCcccCCEEEEEECCCCC-------cCeEEec
Confidence                     0001113345678899999999999999 7888       56778999999999987       33332  


Q ss_pred             -------eccCCcEeEEEEecCCCcccc
Q psy4577         344 -------TGHTAVVELELIERLTKKADP  364 (384)
Q Consensus       344 -------~~h~~~v~~~~~sp~~~~~~~  364 (384)
                             ..|...|.+++|||||+.+..
T Consensus       351 ~~~~~~~~~~~~rv~~~~fSpDGk~i~v  378 (426)
T d1hzua2         351 IAEWADLGEGAKRVVQPEYNKRGDEVWF  378 (426)
T ss_dssp             HHHHHCCCSSCCCEEEEEECSSSSEEEE
T ss_pred             cchhcccCCCCccEEEEEECCCCCEEEE
Confidence                   346677999999999997643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=7.7e-24  Score=183.81  Aligned_cols=108  Identities=11%  Similarity=0.052  Sum_probs=86.7

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc----cceeeecCCCCceEEEEeCCCCCCeEEEee
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC----HPDLRLRGHQKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      .+...+++++|+|++  +||+|+.||+|+|||+.        ++..    .....+.+|..+|++++|+|+| ++|++|+
T Consensus       182 ~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~--------~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~l~sgs  250 (393)
T d1sq9a_         182 TPSQFATSVDISERG--LIATGFNNGTVQISELS--------TLRPLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAH  250 (393)
T ss_dssp             SSCCCCCEEEECTTS--EEEEECTTSEEEEEETT--------TTEEEEEEECCC---CCCCCEEEEEECSST-TEEEEEE
T ss_pred             CCCCcEEEEEECCCC--EEEEEeCCCcEEEEeec--------ccccccccccccccccccceEEEccccccc-ceeeeec
Confidence            345678999999987  78999999999999986        3322    1223567899999999999999 7999999


Q ss_pred             CCCc---EEEEecCCCCCCCccccceeee-------------eccCCcEeEEEEecCCCccccccc
Q psy4577         318 DDHT---ICLWDINATPKENRVIDAKTIF-------------TGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       318 ~Dg~---i~iwd~~~~~~~~~~~~~~~~~-------------~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      .|++   |++||+++++       .+.++             .+|...|++++|+|+++.+++.+.
T Consensus       251 ~D~t~~~i~lwd~~~g~-------~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~  309 (393)
T d1sq9a_         251 DSNSFGCITLYETEFGE-------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW  309 (393)
T ss_dssp             EETTEEEEEEEETTTCC-------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCCcceeeecccccce-------eeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECC
Confidence            9975   9999999886       44444             589999999999999998877643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.1e-22  Score=170.42  Aligned_cols=262  Identities=14%  Similarity=0.180  Sum_probs=151.9

Q ss_pred             EEEecccccce-EEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccC
Q psy4577          45 LFIHGGHTAKI-SDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWP  123 (384)
Q Consensus        45 ~~~~~gh~~~V-~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (384)
                      ..+++||.+.| +|++|  +++ +||||+.||+|+|||+.+++             .+           ..+.+|  ..+
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~-~l~tgs~Dg~i~vWd~~~~~-------------~~-----------~~l~~H--~~~   55 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKK-------------FL-----------LQLSGH--DGG   55 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETT-EEEEEETTTEEEEEETTTTE-------------EE-----------EEEECC--SSC
T ss_pred             cEEECCcCCCcEEEEEE--CCC-EEEEEeCCCeEEEEECCCCc-------------EE-----------EEEECC--CCC
Confidence            45688998886 56665  566 88999999999999997751             11           234455  678


Q ss_pred             eeEEEEecCceeee---cceeeeeccccccccceeecccccccceeeeeccCCC--CCCCCccceeEEEEeeecc-----
Q psy4577         124 SLTAQWLPDVTRVI---NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVT--RPEGKDYSIHRLILGTHTS-----  193 (384)
Q Consensus       124 v~~~~~~~~~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----  193 (384)
                      |.+++|+|++..+.   |+++++|+..................+....+.++..  .....+..+..+.+.....     
T Consensus        56 V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~  135 (355)
T d1nexb2          56 VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG  135 (355)
T ss_dssp             EEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC--------
T ss_pred             EEEEEEcCCCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecccc
Confidence            99999999764433   9999999987655433222221111111111111110  0000000000000000000     


Q ss_pred             -----------CCCCeEEEEEee--------cCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcC
Q psy4577         194 -----------DEQNHLLIASVQ--------LPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMP  254 (384)
Q Consensus       194 -----------~~~~~~~i~~~~--------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  254 (384)
                                 .......+....        ...++..+.....|.....|    +...........++...+.++.|+|
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~----d~~~~~~~~~~~~~~~~~~~~~~~~  211 (355)
T d1nexb2         136 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW----DVAQMKCLYILSGHTDRIYSTIYDH  211 (355)
T ss_dssp             ---CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEE----ETTTTEEEEEECCCSSCEEEEEEET
T ss_pred             ccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeee----ecccccceeeeeccccccccccccc
Confidence                       000000000000        00111222222223222222    1122223445557888899999999


Q ss_pred             CCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCC
Q psy4577         255 QNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKEN  334 (384)
Q Consensus       255 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~  334 (384)
                      ++. ++++++.|+.|++||++        .+  ..+..+.+|...|.+++|++   .+|++|+.||+|++||+++..   
T Consensus       212 ~~~-~~~~~~~d~~i~i~d~~--------~~--~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~---  274 (355)
T d1nexb2         212 ERK-RCISASMDTTIRIWDLE--------NG--ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYS---  274 (355)
T ss_dssp             TTT-EEEEEETTSCEEEEETT--------TC--CEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTCC---
T ss_pred             cce-eeecccccceEEeeecc--------cc--cccccccccccccccccccc---ceeeeeecccccccccccccc---
Confidence            995 89999999999999986        33  34668899999999999974   589999999999999998764   


Q ss_pred             ccccceeeeeccCCcEeEEEE-ecCCCcc
Q psy4577         335 RVIDAKTIFTGHTAVVELELI-ERLTKKA  362 (384)
Q Consensus       335 ~~~~~~~~~~~h~~~v~~~~~-sp~~~~~  362 (384)
                            ..+..|...+.++.+ +|++..+
T Consensus       275 ------~~~~~~~~~~~~~~~~~~~~~~l  297 (355)
T d1nexb2         275 ------RKFSYHHTNLSAITTFYVSDNIL  297 (355)
T ss_dssp             ------EEEEEECTTCCCCCEEEECSSEE
T ss_pred             ------eecccccCCceEEEEEcCCCCEE
Confidence                  334556666666654 5555443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=1.9e-22  Score=172.48  Aligned_cols=272  Identities=8%  Similarity=-0.011  Sum_probs=161.6

Q ss_pred             CCCCCCCCceEEEeeCCC--eEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEE
Q psy4577           1 VQWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ   78 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~   78 (384)
                      ++|+|||+ +|++++.+.  .|++||+.+               .....+.+|...|.+++|+|+++ .|++++.|+.++
T Consensus        48 ~~~spDg~-~l~~~~~~~g~~v~v~d~~~---------------~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~~~~~~  110 (360)
T d1k32a3          48 VRRGGDTK-VAFIHGTREGDFLGIYDYRT---------------GKAEKFEENLGNVFAMGVDRNGK-FAVVANDRFEIM  110 (360)
T ss_dssp             EEECSSSE-EEEEEEETTEEEEEEEETTT---------------CCEEECCCCCCSEEEEEECTTSS-EEEEEETTSEEE
T ss_pred             EEECCCCC-EEEEEEcCCCCEEEEEECCC---------------CcEEEeeCCCceEEeeeeccccc-ccceeccccccc
Confidence            47999998 566655443  799999986               33445678999999999999999 778999999999


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee--------------cceeeee
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI--------------NEEYKIW  144 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------------d~~v~~w  144 (384)
                      +|++.+++.             ..+           +..|  ...+.+++|+|+|+.++              ++.+++|
T Consensus       111 ~~~~~~~~~-------------~~~-----------~~~~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~  164 (360)
T d1k32a3         111 TVDLETGKP-------------TVI-----------ERSR--EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY  164 (360)
T ss_dssp             EEETTTCCE-------------EEE-----------EECS--SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             cccccccce-------------eee-----------eecc--cccccchhhccceeeeeeeccccccceeeccccceeee
Confidence            999987521             111           1111  34566899999998876              4567888


Q ss_pred             ccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeecc------------CCCCeEEEEEeecCCCCcc
Q psy4577         145 KKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTS------------DEQNHLLIASVQLPNEDAQ  212 (384)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~  212 (384)
                      +..+..........   .......|.|++..          +.......            .......+..+.+......
T Consensus       165 d~~~~~~~~~~~~~---~~~~~~~~spdg~~----------l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  231 (360)
T d1k32a3         165 DMEGRKIFAATTEN---SHDYAPAFDADSKN----------LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPN  231 (360)
T ss_dssp             ETTTTEEEECSCSS---SBEEEEEECTTSCE----------EEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCC
T ss_pred             ccccCceeeecccc---cccccccccCCCCE----------EEEEeCCCceEcccccccceeeccccceEEEecccCccc
Confidence            88765443322111   12234556665431          11111000            0001112222332222211


Q ss_pred             cccccccCcCC----------CCCCccCCCCceeEEEEeecCCceEEEEEcCCCC--cEEEEEeCCCcEEEEecCCCCCC
Q psy4577         213 FDASNYDTDKG----------DFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNP--CVIATKTPSSDVLVFDYTKHPSK  280 (384)
Q Consensus       213 ~~~~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~--~~l~s~s~dg~i~iwd~~~~~~~  280 (384)
                      ......+....          ...........-.......+.+.+..+.+.+.++  .++++++.++.|++||+.     
T Consensus       232 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-----  306 (360)
T d1k32a3         232 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-----  306 (360)
T ss_dssp             GGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETT-----
T ss_pred             cceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECC-----
Confidence            11111111100          0000000001111233345566666666666543  367888899999999985     


Q ss_pred             CCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcE
Q psy4577         281 PDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVV  350 (384)
Q Consensus       281 ~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v  350 (384)
                         .+.      +..|.+.|.+++||||| ++|++++.||.|++||++.+.       ...++.-+..++
T Consensus       307 ---~~~------~~~~~~~v~~~~~SpDG-~~l~~~~~Dg~i~v~d~~~~~-------~~~~~~~d~~~~  359 (360)
T d1k32a3         307 ---TRK------VTEVKNNLTDLRLSADR-KTVMVRKDDGKIYTFPLEKPE-------DERTVETDKRPL  359 (360)
T ss_dssp             ---TCC------EEEEEEEEEEEEECTTS-CEEEEEETTSCEEEEESSCTT-------SCEECCCCSSCE
T ss_pred             ---CCe------EEEecCCcCEEEECCCC-CEEEEEECCCeEEEEECCCCC-------cceEEEeccccc
Confidence               221      23355679999999999 799999999999999999987       556555454443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=4.9e-23  Score=176.24  Aligned_cols=273  Identities=10%  Similarity=-0.049  Sum_probs=166.3

Q ss_pred             CCCC-CCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecC--CeEE
Q psy4577           2 QWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED--NIMQ   78 (384)
Q Consensus         2 ~fsp-~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D--~~i~   78 (384)
                      .||| ||+ ++|+++ +|.|+|||+..              .....  .+|...|++++|+|||+ .|++++.|  ..|+
T Consensus         9 ~fSP~dG~-~~a~~~-~g~v~v~d~~~--------------~~~~~--~~~~~~v~~~~~spDg~-~l~~~~~~~g~~v~   69 (360)
T d1k32a3           9 DFSPLDGD-LIAFVS-RGQAFIQDVSG--------------TYVLK--VPEPLRIRYVRRGGDTK-VAFIHGTREGDFLG   69 (360)
T ss_dssp             EEEECGGG-CEEEEE-TTEEEEECTTS--------------SBEEE--CSCCSCEEEEEECSSSE-EEEEEEETTEEEEE
T ss_pred             cccCCCCC-EEEEEE-CCeEEEEECCC--------------CcEEE--ccCCCCEEEEEECCCCC-EEEEEEcCCCCEEE
Confidence            5899 786 788876 57999999975              23333  37899999999999999 55555544  3899


Q ss_pred             EEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccce
Q psy4577          79 ILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDL  154 (384)
Q Consensus        79 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~  154 (384)
                      +||+.+++.              +.           +..|  ...+.+++|+|+++.++    ++.+++|+..+......
T Consensus        70 v~d~~~~~~--------------~~-----------~~~~--~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~  122 (360)
T d1k32a3          70 IYDYRTGKA--------------EK-----------FEEN--LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI  122 (360)
T ss_dssp             EEETTTCCE--------------EE-----------CCCC--CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEECCCCcE--------------EE-----------eeCC--CceEEeeeecccccccceeccccccccccccccceeee
Confidence            999987511              11           1122  55688999999999888    88899999987766555


Q ss_pred             eecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCc
Q psy4577         155 VMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGK  234 (384)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  234 (384)
                      ...+...  ...+.|.|++.          .+.........          ............++..           ..
T Consensus       123 ~~~~~~~--~~~~~~spdg~----------~la~~~~~~~~----------~~~~~~~~~~~v~d~~-----------~~  169 (360)
T d1k32a3         123 ERSREAM--ITDFTISDNSR----------FIAYGFPLKHG----------ETDGYVMQAIHVYDME-----------GR  169 (360)
T ss_dssp             EECSSSC--CCCEEECTTSC----------EEEEEEEECSS----------TTCSCCEEEEEEEETT-----------TT
T ss_pred             eeccccc--ccchhhcccee----------eeeeecccccc----------ceeeccccceeeeccc-----------cC
Confidence            4433322  33455655542          11111110000          0000000000011111           11


Q ss_pred             eeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC---------------------CC----------
Q psy4577         235 IEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP---------------------DP----------  283 (384)
Q Consensus       235 ~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~---------------------~~----------  283 (384)
                       .......+...+..++|+|+|+ .|++++.++.+++|+........                     .+          
T Consensus       170 -~~~~~~~~~~~~~~~~~spdg~-~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  247 (360)
T d1k32a3         170 -KIFAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY  247 (360)
T ss_dssp             -EEEECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCC
T ss_pred             -ceeeecccccccccccccCCCC-EEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccce
Confidence             1233345677889999999996 88999999999999864321100                     00          


Q ss_pred             --CCCcc----------ceeeecCCCCceEEEEeCCCCC--CeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCc
Q psy4577         284 --NGECH----------PDLRLRGHQKEGYGLSWNPSLN--GYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAV  349 (384)
Q Consensus       284 --~~~~~----------~~~~~~~h~~~i~~~~~s~~~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~  349 (384)
                        .+...          ....+..+.+.+..+.+.+.++  .++++++.|+.|++||+.+++       . .   .|.+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-------~-~---~~~~~  316 (360)
T d1k32a3         248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-------V-T---EVKNN  316 (360)
T ss_dssp             CCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC-------E-E---EEEEE
T ss_pred             eecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe-------E-E---EecCC
Confidence              00000          0112222333444455544431  367888899999999998864       2 2   34556


Q ss_pred             EeEEEEecCCCcccccc
Q psy4577         350 VELELIERLTKKADPVC  366 (384)
Q Consensus       350 v~~~~~sp~~~~~~~~c  366 (384)
                      |.+++|||||+.++...
T Consensus       317 v~~~~~SpDG~~l~~~~  333 (360)
T d1k32a3         317 LTDLRLSADRKTVMVRK  333 (360)
T ss_dssp             EEEEEECTTSCEEEEEE
T ss_pred             cCEEEECCCCCEEEEEE
Confidence            99999999999887653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=2.4e-22  Score=176.15  Aligned_cols=298  Identities=13%  Similarity=0.049  Sum_probs=166.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCee---EEEecccccceEEEEEccCCCcEEEEEecCCeE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL---LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM   77 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i   77 (384)
                      |+|||||+ +|++++.|++|++||+.+..            ...   +....+|.+.+.+++|+|||+++++++..++++
T Consensus        67 vafSPDGk-~l~~~~~d~~v~vwd~~t~~------------~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v  133 (426)
T d1hzua2          67 SRMSASGR-YLLVIGRDARIDMIDLWAKE------------PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF  133 (426)
T ss_dssp             EEECTTSC-EEEEEETTSEEEEEETTSSS------------CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEE
T ss_pred             EEECCCCC-EEEEEeCCCCEEEEEccCCc------------eeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeE
Confidence            57999998 78999999999999998632            222   233347788889999999999777777899999


Q ss_pred             EEEEcccCCCccchh---------------h-ee---eeeee-----------EEEeccCCcccccceeeeeeccCeeEE
Q psy4577          78 QILSVVCVEPFDDAV---------------E-ER---VINEE-----------YKIWKKNTPFLYDLVMTHALEWPSLTA  127 (384)
Q Consensus        78 ~vwd~~~~~~~~~~~---------------~-~~---~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~  127 (384)
                      ++||...++......               . ..   ..+..           +..+........ ..........+..+
T Consensus       134 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~  212 (426)
T d1hzua2         134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL-TVTSIGAAPFLADG  212 (426)
T ss_dssp             EEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSC-EEEEEECCSSEEEE
T ss_pred             EEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccce-eeEEeccCCccEee
Confidence            999988763211000               0 00   00111           111111111000 01111224556789


Q ss_pred             EEecCceeee-----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEE
Q psy4577         128 QWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIA  202 (384)
Q Consensus       128 ~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  202 (384)
                      .|+|++++++     +..+.+++.................+.....+..                        .....+.
T Consensus       213 ~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~  268 (426)
T d1hzua2         213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH------------------------PKYGPVW  268 (426)
T ss_dssp             EECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEE------------------------TTTEEEE
T ss_pred             eECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeec------------------------CCCCceE
Confidence            9999998776     5566777766554433322211111111111100                        0111122


Q ss_pred             EeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEE-------EEeCCCcEEEEecC
Q psy4577         203 SVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIA-------TKTPSSDVLVFDYT  275 (384)
Q Consensus       203 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~-------s~s~dg~i~iwd~~  275 (384)
                      ......++..............+       .......+.+|...+..++|+|+++ +|+       +++.|++|+|||+.
T Consensus       269 ~~~~~~d~~v~~~~~~~~~~~~~-------~~~~~~~l~g~~~~v~~v~~sPdg~-~l~v~~~~~~s~~~~~tv~vwd~~  340 (426)
T d1hzua2         269 STSHLGDGSISLIGTDPKNHPQY-------AWKKVAELQGQGGGSLFIKTHPKSS-HLYVDTTFNPDARISQSVAVFDLK  340 (426)
T ss_dssp             EEECTTTCEEEEEECCTTTCTTT-------BTSEEEEEECSSSCCCCEECCTTCS-EEEECCTTCSSHHHHTCEEEEETT
T ss_pred             EeccCCCceEEEeeccccccccc-------cceEeEEEecCCCceeEEEcCCCCc-eEEEeecCCCCcccCCEEEEEECC
Confidence            22211111111111111111110       1112456678999999999999997 666       45568899999986


Q ss_pred             CCCCCCCCCCCccce---eeecCCCCceEEEEeCCCCCCeEEEe----eCCCcEEEEecCCCCCCCccccceeeeeccCC
Q psy4577         276 KHPSKPDPNGECHPD---LRLRGHQKEGYGLSWNPSLNGYLLSA----SDDHTICLWDINATPKENRVIDAKTIFTGHTA  348 (384)
Q Consensus       276 ~~~~~~~~~~~~~~~---~~~~~h~~~i~~~~~s~~~~~~l~s~----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~  348 (384)
                      ....    .....+.   ..+..|...|..++|||||.++++|+    +.||.|+|||.++.+       ....+.++. 
T Consensus       341 t~~~----~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k-------~~~~i~~~~-  408 (426)
T d1hzua2         341 NLDA----KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK-------LKAVVKDPR-  408 (426)
T ss_dssp             CTTS----CCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE-------EEEEECCTT-
T ss_pred             CCCc----CeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe-------EEEEECCCC-
Confidence            3211    0011111   12334667899999999994344553    468999999999997       777776654 


Q ss_pred             cEeEEEEecCCCc
Q psy4577         349 VVELELIERLTKK  361 (384)
Q Consensus       349 ~v~~~~~sp~~~~  361 (384)
                           .++|+|++
T Consensus       409 -----~~tp~Gk~  416 (426)
T d1hzua2         409 -----LITPTGKF  416 (426)
T ss_dssp             -----CCSEEEEE
T ss_pred             -----ccCCCceE
Confidence                 23466554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.6e-21  Score=164.88  Aligned_cols=254  Identities=10%  Similarity=0.016  Sum_probs=147.8

Q ss_pred             eeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeecc
Q psy4577          43 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEW  122 (384)
Q Consensus        43 ~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (384)
                      +++....+|++.|++|+|+|+++ +||+||.||+|+|||+.....                   ... + ....+|  ..
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~-------------------~~~-~-~~~~~h--~~   57 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAK-------------------NVD-L-LQSLRY--KH   57 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTT-------------------EEE-E-EEEEEC--SS
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCc-------------------ceE-E-EEecCC--CC
Confidence            45667789999999999999999 889999999999999976411                   000 0 111233  67


Q ss_pred             CeeEEEEecCce-eee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCC
Q psy4577         123 PSLTAQWLPDVT-RVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQN  197 (384)
Q Consensus       123 ~v~~~~~~~~~~-~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (384)
                      +|.+++|+|++. .++    |+.+++|+.................. ....+.+...          .+..+.    ...
T Consensus        58 ~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~----~~~  122 (342)
T d1yfqa_          58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLG-ICRICKYGDD----------KLIAAS----WDG  122 (342)
T ss_dssp             CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSC-EEEEEEETTT----------EEEEEE----TTS
T ss_pred             CEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccc-cccccccccc----------cccccc----ccc
Confidence            899999999764 444    89999999876544333222211100 0000000000          000000    011


Q ss_pred             eEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEee--cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q psy4577         198 HLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKIN--HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYT  275 (384)
Q Consensus       198 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~  275 (384)
                      .+.++.+.                .       .............  .......+.+.+.+. .+++++.|+.|++||++
T Consensus       123 ~~~~wd~~----------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~  178 (342)
T d1yfqa_         123 LIEVIDPR----------------N-------YGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-RLIVGMNNSQVQWFRLP  178 (342)
T ss_dssp             EEEEECHH----------------H-------HTTBCEEEEESCSSSSSSCCCEEEEEECSS-EEEEEESTTEEEEEESS
T ss_pred             ccceeecc----------------c-------cccceeeecccccccccceeeeeeeeccCC-ceeeecCCCcEEEEecc
Confidence            11111111                0       0000111111111  122344566677774 89999999999999997


Q ss_pred             CCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccc--------cceeeeeccC
Q psy4577         276 KHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVI--------DAKTIFTGHT  347 (384)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--------~~~~~~~~h~  347 (384)
                      ...       ..........+...+.+..+.+.....+++++.||.+.+|++..........        .......+|.
T Consensus       179 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
T d1yfqa_         179 LCE-------DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA  251 (342)
T ss_dssp             CCT-------TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC
T ss_pred             cCc-------ccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccc
Confidence            321       1112223344555666766666544799999999999999987654221110        0112224577


Q ss_pred             CcEeEEEEecCCCcccccc
Q psy4577         348 AVVELELIERLTKKADPVC  366 (384)
Q Consensus       348 ~~v~~~~~sp~~~~~~~~c  366 (384)
                      ..|++++|+|+++.+++.+
T Consensus       252 ~~v~~l~~sp~~~~lasg~  270 (342)
T d1yfqa_         252 YPVNSIEFSPRHKFLYTAG  270 (342)
T ss_dssp             CCEEEEEECTTTCCEEEEE
T ss_pred             ccceeEEecCCccEEEEEC
Confidence            7899999999999887653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.6e-21  Score=160.20  Aligned_cols=220  Identities=15%  Similarity=0.119  Sum_probs=140.0

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEE
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILS   81 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd   81 (384)
                      +|++++  .+++++.|++|++|++...                     .....+.++++++++. +++ .+.++.+.+|+
T Consensus        53 ~~~~~~--~~~s~s~D~~v~~w~~~~~---------------------~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~  107 (287)
T d1pgua2          53 DNSKAQ--EYSSISWDDTLKVNGITKH---------------------EFGSQPKVASANNDGF-TAV-LTNDDDLLILQ  107 (287)
T ss_dssp             ECCSTT--CCEEEETTTEEEETTEEEE---------------------ECSSCEEEEEECSSSE-EEE-EETTSEEEEEE
T ss_pred             EecCCC--eEEEEeecccccccccccc---------------------ccccceeeeeeccCCc-eEE-Eeecccceeee
Confidence            466554  4899999999999998641                     1233577889998887 554 45666788888


Q ss_pred             cccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceee
Q psy4577          82 VVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~  156 (384)
                      ...++.             ++..+.              .  ....++++++..++     ++.+++|+...........
T Consensus       108 ~~~~~~-------------~~~~~~--------------~--~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~  158 (287)
T d1pgua2         108 SFTGDI-------------IKSVRL--------------N--SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK  158 (287)
T ss_dssp             TTTCCE-------------EEEEEC--------------S--SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECS
T ss_pred             ccceee-------------eeeccc--------------c--ceeeeeeccCcceeeeccccceeeeeeccccceeeeee
Confidence            766421             111111              1  12355677776665     3568999875433211111


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                      . ....                                     .+..+.+++++..+.+...|.....|..   ..+...
T Consensus       159 ~-~~~~-------------------------------------~v~~~~~s~~~~~l~~g~~dg~i~i~d~---~~~~~~  197 (287)
T d1pgua2         159 T-PLRA-------------------------------------KPSYISISPSETYIAAGDVMGKILLYDL---QSREVK  197 (287)
T ss_dssp             S-CCSS-------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEET---TTTEEE
T ss_pred             e-ccCC-------------------------------------ceeEEEeccCccccccccccccccceee---cccccc
Confidence            0 0111                                     1333444444444444444444433321   112222


Q ss_pred             EEEEeecCCceEEEEEcCCC---------CcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCC
Q psy4577         237 IEIKINHEGEVNRARYMPQN---------PCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNP  307 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~---------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~  307 (384)
                      ......|...|.+++|+|.+         ..+|++|+.|++|+|||++.         ....+..+.+|...|++++|+|
T Consensus       198 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~---------~~~~~~~~~~h~~~V~~v~~~~  268 (287)
T d1pgua2         198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR---------PMKIIKALNAHKDGVNNLLWET  268 (287)
T ss_dssp             ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC---------TTCCEEETTSSTTCEEEEEEEE
T ss_pred             cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCC---------CCeEEEEeCCCCCCeEEEEECC
Confidence            23345789999999999854         24899999999999999852         2234567789999999999999


Q ss_pred             CCCCeEEEeeCCCcEEEEec
Q psy4577         308 SLNGYLLSASDDHTICLWDI  327 (384)
Q Consensus       308 ~~~~~l~s~s~Dg~i~iwd~  327 (384)
                      ++  .|+|+|.|++|++|++
T Consensus       269 ~~--~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         269 PS--TLVSSGADACIKRWNV  286 (287)
T ss_dssp             TT--EEEEEETTSCEEEEEE
T ss_pred             CC--EEEEEECCCeEEEEEE
Confidence            85  6899999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.3e-21  Score=160.29  Aligned_cols=252  Identities=16%  Similarity=0.206  Sum_probs=146.3

Q ss_pred             CeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeec
Q psy4577          42 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALE  121 (384)
Q Consensus        42 ~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (384)
                      .+...+++||.+.|.+ +++++|+ +|||||.||+|+|||+.+++.             +           ..+.+|  .
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~-------------~-----------~~~~~h--~   57 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKC-------------L-----------RTLVGH--T   57 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCE-------------E-----------EECCCC--S
T ss_pred             CCcCEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCE-------------E-----------EEEeCC--C
Confidence            3556778999999865 4666788 789999999999999987521             1           233455  5


Q ss_pred             cCeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCC
Q psy4577         122 WPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQN  197 (384)
Q Consensus       122 ~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (384)
                      ..|.+++|+|+  .++    |+.+++|+................  .......+........+..+..  .....   ..
T Consensus        58 ~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~--~~~~~---~~  128 (342)
T d2ovrb2          58 GGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTST--VRCMHLHEKRVVSGSRDATLRV--WDIET---GQ  128 (342)
T ss_dssp             SCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEETTEEEEEETTSEEEE--EESSS---CC
T ss_pred             CCEEEEEeCCC--ccccceecccccccccccccceeccccccee--EeeeecccccccccccceeEEE--eeccc---cc
Confidence            67999999986  444    999999998665443222211110  0111111000000000000000  00000   00


Q ss_pred             eEEEEEe------ecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEE
Q psy4577         198 HLLIASV------QLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLV  271 (384)
Q Consensus       198 ~~~i~~~------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~i  271 (384)
                      .......      ..............|.....+    ............+|...+..+.+  ++ .++++|+.||.|++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~----d~~~~~~~~~~~~~~~~~~~~~~--~~-~~l~s~~~dg~i~~  201 (342)
T d2ovrb2         129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW----DPETETCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRV  201 (342)
T ss_dssp             EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEE----EGGGTEEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEE
T ss_pred             ceeeeecccccceeeccccceeeeecCCCeEEEe----ecccceeeEEEcCcccccccccC--CC-CEEEEEeCCCeEEE
Confidence            0000000      000111122222233332222    11122234455567766665554  56 48999999999999


Q ss_pred             EecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeec---cCC
Q psy4577         272 FDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG---HTA  348 (384)
Q Consensus       272 wd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~---h~~  348 (384)
                      ||++        .+  .++..+.+|...+.++++++   .+|++|+.||.|++||+...+       ....+.+   |..
T Consensus       202 ~d~~--------~~--~~~~~~~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~-------~~~~~~~~~~~~~  261 (342)
T d2ovrb2         202 WDVE--------TG--NCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQ-------CLQTLQGPNKHQS  261 (342)
T ss_dssp             EETT--------TC--CEEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCC-------EEEEECSTTSCSS
T ss_pred             eecc--------cc--eeeeEecccccceeEEecCC---CEEEEEcCCCEEEEEeccccc-------ccccccccceeee
Confidence            9986        23  35668889999999888864   589999999999999999887       5555554   666


Q ss_pred             cEeEEEEec
Q psy4577         349 VVELELIER  357 (384)
Q Consensus       349 ~v~~~~~sp  357 (384)
                      .+.++.|++
T Consensus       262 ~~~~~~~~~  270 (342)
T d2ovrb2         262 AVTCLQFNK  270 (342)
T ss_dssp             CEEEEEECS
T ss_pred             ceeecccCC
Confidence            777777765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=2.7e-19  Score=151.74  Aligned_cols=290  Identities=8%  Similarity=-0.029  Sum_probs=167.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-ccccceEEEEEccCCCcEEEEEecCCeEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWVICSVSEDNIMQI   79 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~~l~s~s~D~~i~v   79 (384)
                      ++|+++++ +|++++.|++|.|||+.+              .+++.++. .|...+.+++|+|||++++++++.++.|.+
T Consensus         2 ~a~~~~~~-~l~~~~~~~~v~v~D~~t--------------~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~   66 (346)
T d1jmxb_           2 PALKAGHE-YMIVTNYPNNLHVVDVAS--------------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG   66 (346)
T ss_dssp             CCCCTTCE-EEEEEETTTEEEEEETTT--------------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccCCCCCc-EEEEEcCCCEEEEEECCC--------------CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEE
Confidence            57999997 899999999999999987              47777665 456678899999999977778889999999


Q ss_pred             EEcccCCCccchh----------------------hee--------------eeeeeEEEeccCCcccccceeeeeeccC
Q psy4577          80 LSVVCVEPFDDAV----------------------EER--------------VINEEYKIWKKNTPFLYDLVMTHALEWP  123 (384)
Q Consensus        80 wd~~~~~~~~~~~----------------------~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (384)
                      ||+.+++......                      ...              ..+..+.+|..........+..+.....
T Consensus        67 ~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  146 (346)
T d1jmxb_          67 IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQ  146 (346)
T ss_dssp             EETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSS
T ss_pred             EeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCc
Confidence            9998763211000                      000              0112234444333333233334444445


Q ss_pred             eeEEEEecCceeee-cceeeeeccccccccceeecccccccceeeeeccCCCCC---CCCccceeEEEEeeeccCCCCeE
Q psy4577         124 SLTAQWLPDVTRVI-NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRP---EGKDYSIHRLILGTHTSDEQNHL  199 (384)
Q Consensus       124 v~~~~~~~~~~~~~-d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  199 (384)
                      +..+.+++++..++ +..+.+|+..+......+......   ....+.++....   ..............         
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  214 (346)
T d1jmxb_         147 VYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWN---RKGYSAPDVLYFWPHQSPRHEFSMLYTIA---------  214 (346)
T ss_dssp             CCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCC---CTTBCCCBCCCCCCCCCTTCEEEEEEEEE---------
T ss_pred             eEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCc---cceEEeccccEEEEEecCCCceEeeeeee---------
Confidence            56677777776554 677788887665443332222111   112222222100   00000100000000         


Q ss_pred             EEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCC
Q psy4577         200 LIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPS  279 (384)
Q Consensus       200 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~  279 (384)
                           ........+.....+.....+   ....+.........|...+..+.+++++. +++.+. ++.|++||..    
T Consensus       215 -----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~v~v~d~~----  280 (346)
T d1jmxb_         215 -----RFKDDKQDPATADLLYGYLSV---DLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV-LNRLAKYDLK----  280 (346)
T ss_dssp             -----EC-------CCCEEEEEEEEE---ETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE-ESEEEEEETT----
T ss_pred             -----eeccCceeEeeccCCceEEEE---ECCCCceEEEEeecccceeEEEEEeCCCC-EEEEec-CCeEEEEECC----
Confidence                 000000000000000000000   01112333444557888899999999986 555554 4679999985    


Q ss_pred             CCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeecc
Q psy4577         280 KPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGH  346 (384)
Q Consensus       280 ~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h  346 (384)
                          ++.  .+..+. +...+.+++|+||| ++|++++.|+.|++||+++.+       .+.++.-+
T Consensus       281 ----~~~--~~~~~~-~~~~~~~va~s~DG-~~l~v~~~d~~v~v~D~~t~~-------~i~~i~~p  332 (346)
T d1jmxb_         281 ----QRK--LIKAAN-LDHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDTLE-------KVKNIKLP  332 (346)
T ss_dssp             ----TTE--EEEEEE-CSSCCCEEEECSSS-SCEEEESBSSEEEEEETTTTE-------EEEEEECS
T ss_pred             ----CCc--EEEEEc-CCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECccCC-------EEEEEECC
Confidence                332  233333 34568999999999 799999999999999999988       77777643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=3e-19  Score=155.97  Aligned_cols=289  Identities=9%  Similarity=-0.004  Sum_probs=161.8

Q ss_pred             Cce-EEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCC
Q psy4577           8 ETI-LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVE   86 (384)
Q Consensus         8 ~~~-lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~   86 (384)
                      .++ +++.+.||+|.|||..+              .+++..+..|. .+..++|+|||+ ++++++.|+++++||+.+++
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t--------------~~v~~~~~~g~-~~~~v~fSpDG~-~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGST--------------YEIKTVLDTGY-AVHISRLSASGR-YLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTT--------------CCEEEEEECSS-CEEEEEECTTSC-EEEEEETTSEEEEEETTSSS
T ss_pred             CcEEEEEEcCCCEEEEEECCC--------------CcEEEEEeCCC-CeeEEEECCCCC-EEEEEcCCCCEEEEEeeCCC
Confidence            344 58899999999999987              47777777774 699999999999 67899999999999997752


Q ss_pred             CccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeeccccc
Q psy4577          87 PFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALE  161 (384)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~  161 (384)
                      ...                     ...+..+......+.+..|+|||+.++     ++++++||..+......+..+...
T Consensus        95 ~~~---------------------~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~  153 (432)
T d1qksa2          95 PTT---------------------VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT  153 (432)
T ss_dssp             CCE---------------------EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC
T ss_pred             ceE---------------------EEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcc
Confidence            110                     000011111134455677889998864     899999999877665544333221


Q ss_pred             ccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCccccccccc-CcCCCCCCccCCCCceeEEEE
Q psy4577         162 WPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYD-TDKGDFGGFGSVSGKIEIEIK  240 (384)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~  240 (384)
                      ...  ..+.++.                          ....+.+++++..+.+...+ .....+.   ...........
T Consensus       154 ~~~--~~~~~~~--------------------------~~~~v~~s~dg~~~~vs~~~~~~i~~~d---~~~~~~~~~~~  202 (432)
T d1qksa2         154 YDE--QEYHPEP--------------------------RVAAILASHYRPEFIVNVKETGKILLVD---YTDLNNLKTTE  202 (432)
T ss_dssp             TTT--CCEESCC--------------------------CEEEEEECSSSSEEEEEETTTTEEEEEE---TTCSSEEEEEE
T ss_pred             ccc--eeccCCC--------------------------ceeEEEECCCCCEEEEEEccCCeEEEEE---ccCCCcceEEE
Confidence            111  1111111                          01111222222222221111 1111110   01112222333


Q ss_pred             eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCC---------CCCC-------------------Cc-cce-
Q psy4577         241 INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKP---------DPNG-------------------EC-HPD-  290 (384)
Q Consensus       241 ~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~---------~~~~-------------------~~-~~~-  290 (384)
                      ..+...+..++|+|+|+.+++++..++.|.++|........         ....                   .. ... 
T Consensus       203 i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~  282 (432)
T d1qksa2         203 ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALI  282 (432)
T ss_dssp             EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred             EcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEec
Confidence            45667789999999997556665666788888876321100         0000                   00 000 


Q ss_pred             ----eeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCcccc-----------------ce--------e
Q psy4577         291 ----LRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVID-----------------AK--------T  341 (384)
Q Consensus       291 ----~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-----------------~~--------~  341 (384)
                          .....|...+....++|++ ..+++++.|.+.++|+..+.........                 .+        .
T Consensus       283 ~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~  361 (432)
T d1qksa2         283 GTDPEGHPDNAWKILDSFPALGG-GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA  361 (432)
T ss_dssp             ECCTTTCTTTBTSEEEEEECSCS-CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred             ccccccccccccEEEEEEEcCCC-CeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEeccccccc
Confidence                0011233356677777776 5777777777777776554321110000                 00        1


Q ss_pred             eeeccCCcEeEEEEecCCCccccc
Q psy4577         342 IFTGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       342 ~~~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      .+..|...|.+++|||||+.+...
T Consensus       362 ~l~~~~~~v~~~~fS~DG~~v~~S  385 (432)
T d1qksa2         362 GITEGQPRVVQGEFNKDGTEVWFS  385 (432)
T ss_dssp             TCCSSCCEEEEEEECTTSSEEEEE
T ss_pred             ccCCCCCcEEEeEECCCCCEEEEE
Confidence            123466789999999999876433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=3.2e-18  Score=144.39  Aligned_cols=277  Identities=10%  Similarity=0.026  Sum_probs=158.8

Q ss_pred             ceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecc--cccceEEEEEccCCCcEEEEEecCCeEEEEEcccCC
Q psy4577           9 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVE   86 (384)
Q Consensus         9 ~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~g--h~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~   86 (384)
                      .+|++++.|++|.|||+++              .+++..+..  +...+.+++|+|||++++++++.|+.|.+||+.+++
T Consensus         2 ~~~vt~~~d~~v~v~D~~s--------------~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~   67 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK--------------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT--------------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC
T ss_pred             eEEEEEcCCCEEEEEECCC--------------CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc
Confidence            4799999999999999987              466666653  345688999999999666788899999999998875


Q ss_pred             Cccchhhe-------------------e--e--------------eeeeEEEeccCCcccccceeeeeeccCeeEEEEec
Q psy4577          87 PFDDAVEE-------------------R--V--------------INEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLP  131 (384)
Q Consensus        87 ~~~~~~~~-------------------~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  131 (384)
                      ........                   .  .              ....+.+|+.........+   .....+..++|+|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~s~  144 (337)
T d1pbyb_          68 TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF---EAPRQITMLAWAR  144 (337)
T ss_dssp             EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE---ECCSSCCCEEECT
T ss_pred             EEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEec---cccCCceEEEEcC
Confidence            32211000                   0  0              0112333333332221111   1234567899999


Q ss_pred             Cceeee--cceeeeeccccccccceeecccccccceeeeeccCCCCC-CCCccceeEEEEeeeccCCCCeEEEEEeecCC
Q psy4577         132 DVTRVI--NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRP-EGKDYSIHRLILGTHTSDEQNHLLIASVQLPN  208 (384)
Q Consensus       132 ~~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  208 (384)
                      +|+.++  ++...+||.........+.......   ...+.++.... .....              .............
T Consensus       145 dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~  207 (337)
T d1pbyb_         145 DGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEA---ETYAQPDVLAVWNQHES--------------SGVMATPFYTARK  207 (337)
T ss_dssp             TSSCEEEESSSEEEEETTTTEEEEEECSTTTTT---TTBCCCBCCCCCCCCTT--------------TTEEEEEEEEEBT
T ss_pred             CCCEEEEEcCCcceeeeecCcEEEEeecCCccc---cceecCCcceeeccccc--------------cceeeeeeeeeee
Confidence            998876  7777888876654433222221110   01111111100 00000              0000111111000


Q ss_pred             CCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcc
Q psy4577         209 EDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECH  288 (384)
Q Consensus       209 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  288 (384)
                      ..........+.....+   ....+.........+...+..+.++|++. +++.+  ++.|++||+.        ++.  
T Consensus       208 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i~v~d~~--------~~~--  271 (337)
T d1pbyb_         208 DIDPADPTAYRTGLLTM---DLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLE--------KNA--  271 (337)
T ss_dssp             TSCTTSGGGEEEEEEEE---ETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETT--------TTE--
T ss_pred             ccceeeecccCccEEEE---EcCCCcEEEEEecCCCcceEEEEecccce-EEEEc--cccEEEEECC--------CCc--
Confidence            11111111111110000   01122333444556778888999999985 66554  5889999986        333  


Q ss_pred             ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeee
Q psy4577         289 PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFT  344 (384)
Q Consensus       289 ~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  344 (384)
                      .+..+ .+...+.+++|+||| .+|++++.|++|++||.++.+       .+.++.
T Consensus       272 ~~~~~-~~~~~~~~~~~s~dG-~~l~v~~~~~~i~v~D~~t~~-------~v~~i~  318 (337)
T d1pbyb_         272 SIKRV-PLPHSYYSVNVSTDG-STVWLGGALGDLAAYDAETLE-------KKGQVD  318 (337)
T ss_dssp             EEEEE-ECSSCCCEEEECTTS-CEEEEESBSSEEEEEETTTCC-------EEEEEE
T ss_pred             EEEEE-cCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCc-------EEEEEE
Confidence            23233 355678999999999 799999999999999999988       776665

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.84  E-value=1.4e-18  Score=144.28  Aligned_cols=239  Identities=11%  Similarity=0.091  Sum_probs=151.8

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|||+.++++++.++.|++||+.+              .+.+..+..|. .+..++|++++..+++++..++.+.+|
T Consensus        37 va~spdG~~l~v~~~~~~~i~v~d~~t--------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (301)
T d1l0qa2          37 AVISPDGTKVYVANAHSNDVSIIDTAT--------------NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVI  101 (301)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETTT--------------TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEECCC--------------Cceeeeeeccc-cccccccccccccccccccccceeeec
Confidence            479999986567888899999999987              46677777765 578999999999777788888999999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccccccccee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLV  155 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~  155 (384)
                      +..+++.             .....              .......+.|+|++..++     +..+.+|+..+......+
T Consensus       102 ~~~~~~~-------------~~~~~--------------~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
T d1l0qa2         102 DTTSNTV-------------AGTVK--------------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (301)
T ss_dssp             ETTTTEE-------------EEEEE--------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccee-------------eeecc--------------ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeec
Confidence            9977411             11111              123456789999998775     677888887665543332


Q ss_pred             ecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCce
Q psy4577         156 MTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKI  235 (384)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  235 (384)
                      .....   ...+.+.++.                                     ..+.....+.....   ....... 
T Consensus       155 ~~~~~---~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~---~~~~~~~-  190 (301)
T d1l0qa2         155 SVGRS---PKGIAVTPDG-------------------------------------TKVYVANFDSMSIS---VIDTVTN-  190 (301)
T ss_dssp             ECCSS---EEEEEECTTS-------------------------------------SEEEEEETTTTEEE---EEETTTT-
T ss_pred             ccCCC---ceEEEeeccc-------------------------------------cceeeecccccccc---cccccce-
Confidence            22111   1112222221                                     11111111100000   0000011 


Q ss_pred             eEEEEeecCCceEEEEEcCCCCcEEEEEe--CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCe-
Q psy4577         236 EIEIKINHEGEVNRARYMPQNPCVIATKT--PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGY-  312 (384)
Q Consensus       236 ~~~~~~~~~~~v~~v~~~p~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~-  312 (384)
                      ...........+..+++++++..+++++.  .++.|++||+.        ++.  .+..+.. ...+.+++|+||| ++ 
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~--------t~~--~~~~~~~-~~~~~~va~spdg-~~l  258 (301)
T d1l0qa2         191 SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG--------TNK--ITARIPV-GPDPAGIAVTPDG-KKV  258 (301)
T ss_dssp             EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT--------TTE--EEEEEEC-CSSEEEEEECTTS-SEE
T ss_pred             eeeecccccCCcceeeccccccccccccccceeeeeeeeecC--------CCe--EEEEEcC-CCCEEEEEEeCCC-CEE
Confidence            12233345566788999999975444433  34689999985        332  3334443 3468999999999 55 


Q ss_pred             EEEeeCCCcEEEEecCCCCCCCccccceeeee
Q psy4577         313 LLSASDDHTICLWDINATPKENRVIDAKTIFT  344 (384)
Q Consensus       313 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  344 (384)
                      +++++.|++|++||+++++       .+.++.
T Consensus       259 ~va~~~~~~i~v~D~~t~~-------~~~~~~  283 (301)
T d1l0qa2         259 YVALSFCNTVSVIDTATNT-------ITATMA  283 (301)
T ss_dssp             EEEETTTTEEEEEETTTTE-------EEEEEE
T ss_pred             EEEECCCCeEEEEECCCCe-------EEEEEe
Confidence            4788899999999999987       666664

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=2.4e-20  Score=163.08  Aligned_cols=298  Identities=8%  Similarity=-0.068  Sum_probs=160.5

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCee---EEEecccccceEEEEEccCCCcEEEEEecCCeE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL---LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM   77 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i   77 (384)
                      ++|||||+ +|++++.|++|++||+.+.+            .+.   +....+|.+.+.+.+|+|||++++++++.+++|
T Consensus        67 v~fSpDG~-~l~~~s~dg~v~~~d~~t~~------------~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v  133 (432)
T d1qksa2          67 SRLSASGR-YLFVIGRDGKVNMIDLWMKE------------PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY  133 (432)
T ss_dssp             EEECTTSC-EEEEEETTSEEEEEETTSSS------------CCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEE
T ss_pred             EEECCCCC-EEEEEcCCCCEEEEEeeCCC------------ceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeE
Confidence            47999998 78999999999999997632            222   233456777888889999999777899999999


Q ss_pred             EEEEcccCCCccchhh----------------ee--------------eeeeeEEEeccCCcccccceeeeeeccCeeEE
Q psy4577          78 QILSVVCVEPFDDAVE----------------ER--------------VINEEYKIWKKNTPFLYDLVMTHALEWPSLTA  127 (384)
Q Consensus        78 ~vwd~~~~~~~~~~~~----------------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  127 (384)
                      ++||..+++.......                ..              .....+.+|+........+.. .........+
T Consensus       134 ~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~-i~~g~~~~~~  212 (432)
T d1qksa2         134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE-ISAERFLHDG  212 (432)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE-EECCSSEEEE
T ss_pred             EEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEE-EcccCccccc
Confidence            9999987642211000                00              001233444332221111111 1123456789


Q ss_pred             EEecCceeee-----cceeeeeccccccccceeecccccc-c--ceeeeeccCCCCC-CCCccceeEEEEeeecc-CCCC
Q psy4577         128 QWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEW-P--SLTAQWLPDVTRP-EGKDYSIHRLILGTHTS-DEQN  197 (384)
Q Consensus       128 ~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~  197 (384)
                      +|+|+|++++     +..+.+++.........+....... +  .....+....... ............+.... ....
T Consensus       213 ~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~  292 (432)
T d1qksa2         213 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN  292 (432)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred             eECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccccc
Confidence            9999999776     6677777776654433322211100 0  0000000000000 00000000011111111 0001


Q ss_pred             eEEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCC
Q psy4577         198 HLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKH  277 (384)
Q Consensus       198 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~  277 (384)
                      ...+......+++..+.....+.....|..          .....|.....++++ |+++ .|++++.|+.+++|++.  
T Consensus       293 ~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~----------~~~~~~~~~~~sv~v-pDg~-~la~~s~d~~~k~w~~~--  358 (432)
T d1qksa2         293 AWKILDSFPALGGGSLFIKTHPNSQYLYVD----------ATLNPEAEISGSVAV-FDIK-AMTGDGSDPEFKTLPIA--  358 (432)
T ss_dssp             BTSEEEEEECSCSCCCCEECCTTCSEEEEE----------CTTCSSHHHHTCEEE-EEGG-GCCCSSSCCCEEEECHH--
T ss_pred             ccEEEEEEEcCCCCeEEEEecCCccceeec----------ccCCCCCCeeeEEEE-Eech-hhcccccCCceEecccc--
Confidence            111222222333333333333332222200          001123333445555 8885 89999999999999974  


Q ss_pred             CCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee-----CCCcEEEEecCCCCCCCccccceeeeec
Q psy4577         278 PSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS-----DDHTICLWDINATPKENRVIDAKTIFTG  345 (384)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s-----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  345 (384)
                            +.     ..+..|...+.+++||||| ++++.+.     .||.|+|||.++.+       ....+++
T Consensus       359 ------~~-----~~l~~~~~~v~~~~fS~DG-~~v~~S~~~~~~~~g~i~i~D~~T~k-------~~~~i~~  412 (432)
T d1qksa2         359 ------EW-----AGITEGQPRVVQGEFNKDG-TEVWFSVWNGKDQESALVVVDDKTLE-------LKHVIKD  412 (432)
T ss_dssp             ------HH-----HTCCSSCCEEEEEEECTTS-SEEEEEEECCTTSCCEEEEEETTTTE-------EEEEECC
T ss_pred             ------cc-----cccCCCCCcEEEeEECCCC-CEEEEEEecCCCCCCcEEEEECCCce-------EEeEecC
Confidence                  11     1234677789999999999 5664432     46899999999997       6555554

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.8e-19  Score=144.85  Aligned_cols=226  Identities=17%  Similarity=0.248  Sum_probs=146.3

Q ss_pred             eeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeecc
Q psy4577          43 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEW  122 (384)
Q Consensus        43 ~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (384)
                      +.+..+.+|...|+|++|  +++ +||||+.||+|+|||+.+++.             +           ..+.+|  ..
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~-------------~-----------~~l~~H--~~   56 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLEC-------------K-----------RILTGH--TG   56 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCE-------------E-----------EEECCC--SS
T ss_pred             EEEeccCCCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcE-------------E-----------EEEecC--CC
Confidence            345556788999999775  677 889999999999999977511             1           234455  66


Q ss_pred             CeeEEEEecCceeee----cceeeeeccccccccceeecccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCe
Q psy4577         123 PSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNH  198 (384)
Q Consensus       123 ~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (384)
                      +|.+++|  +++.++    |+.+++|+................    ........          ..+..+.    ....
T Consensus        57 ~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------~~~~~~~----~~~~  116 (293)
T d1p22a2          57 SVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA----VLHLRFNN----------GMMVTCS----KDRS  116 (293)
T ss_dssp             CEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC----EEEEECCT----------TEEEEEE----TTSC
T ss_pred             CEeeeec--ccceeecccccccccccccccccccccccccccc----cccccccc----------cceeecc----cccc
Confidence            7888877  455665    899999998766543322211110    00000000          0000000    0111


Q ss_pred             EEEEEeecCCCCcccccccccCcCCCCCCccCCCCceeEEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCC
Q psy4577         199 LLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHP  278 (384)
Q Consensus       199 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~  278 (384)
                      ..+...                ..        ............|...+..+.+.+   ..+++++.|+.|++||.+   
T Consensus       117 ~~~~~~----------------~~--------~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~---  166 (293)
T d1p22a2         117 IAVWDM----------------AS--------PTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTS---  166 (293)
T ss_dssp             EEEEEC----------------SS--------SSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETT---
T ss_pred             eeEeec----------------cc--------cccccccccccccccccccceecc---cccccccCCCceeeecCC---
Confidence            111111                10        011223445567888888888765   367788999999999986   


Q ss_pred             CCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecC
Q psy4577         279 SKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERL  358 (384)
Q Consensus       279 ~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  358 (384)
                           .+  +.+..+.+|...+..+.+++   .+|++++.||+|++||+++.+       .+..+.+|...|..  ++++
T Consensus       167 -----~~--~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~--~~~~  227 (293)
T d1p22a2         167 -----TC--EFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGA-------CLRVLEGHEELVRC--IRFD  227 (293)
T ss_dssp             -----TC--CEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEE--EECC
T ss_pred             -----CC--cEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccce-------eeeeecccceeeee--cccc
Confidence                 23  34667888998998888863   589999999999999999988       88888889888875  4555


Q ss_pred             CCcccccc
Q psy4577         359 TKKADPVC  366 (384)
Q Consensus       359 ~~~~~~~c  366 (384)
                      +..+++.+
T Consensus       228 ~~~l~sg~  235 (293)
T d1p22a2         228 NKRIVSGA  235 (293)
T ss_dssp             SSEEEEEE
T ss_pred             ceEEEEEc
Confidence            66555443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.80  E-value=5.7e-17  Score=134.43  Aligned_cols=250  Identities=11%  Similarity=0.023  Sum_probs=154.8

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCcc
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFD   89 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~   89 (384)
                      ..++++.|++|.|||+++              .+++.++... ..+..++|+|+|++++++++.++.|++||+.+++.  
T Consensus         4 ~yV~~~~~~~v~v~D~~t--------------~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~--   66 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTS--------------NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--   66 (301)
T ss_dssp             EEEEETTTTEEEEEETTT--------------TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--
T ss_pred             EEEEECCCCEEEEEECCC--------------CeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce--
Confidence            456778899999999987              4666666543 46789999999996667888999999999987521  


Q ss_pred             chhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeecccccccc
Q psy4577          90 DAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWPS  164 (384)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~~  164 (384)
                                 +..+           ..   ...+..++|++++..++     +..+.+|+.........+.....   .
T Consensus        67 -----------~~~~-----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  118 (301)
T d1l0qa2          67 -----------IATV-----------PA---GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS---P  118 (301)
T ss_dssp             -----------EEEE-----------EC---SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS---E
T ss_pred             -----------eeee-----------ec---cccccccccccccccccccccccceeeecccccceeeeecccccc---c
Confidence                       1111           11   12356889999997665     67788888876554433322211   1


Q ss_pred             eeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccc-cCcCCCCCCccCCCCceeEEEEeec
Q psy4577         165 LTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNY-DTDKGDFGGFGSVSGKIEIEIKINH  243 (384)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~  243 (384)
                      ..+.+.++.                                     ..+..... +.....+    .. ..........+
T Consensus       119 ~~~~~~~dg-------------------------------------~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~  156 (301)
T d1l0qa2         119 LGLALSPDG-------------------------------------KKLYVTNNGDKTVSVI----NT-VTKAVINTVSV  156 (301)
T ss_dssp             EEEEECTTS-------------------------------------SEEEEEETTTTEEEEE----ET-TTTEEEEEEEC
T ss_pred             eEEEeecCC-------------------------------------Ceeeeeeccccceeee----ec-cccceeeeccc
Confidence            222333322                                     11111110 1000000    00 01112233345


Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee---CCC
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS---DDH  320 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s---~Dg  320 (384)
                      ...+..++++|++..++++...++.+.+|+..        ..  .....+. +...+..++|++++ ..++.++   .++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~~-~~~~~~~~~~~~~g-~~~~v~~~~~~~~  224 (301)
T d1l0qa2         157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTV--------TN--SVIDTVK-VEAAPSGIAVNPEG-TKAYVTNVDKYFN  224 (301)
T ss_dssp             CSSEEEEEECTTSSEEEEEETTTTEEEEEETT--------TT--EEEEEEE-CSSEEEEEEECTTS-SEEEEEEECSSCC
T ss_pred             CCCceEEEeeccccceeeeccccccccccccc--------ce--eeeeccc-ccCCcceeeccccc-cccccccccceee
Confidence            56788999999997555555555677777764        11  2222333 34557889999998 5555443   347


Q ss_pred             cEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         321 TICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      +|++||+.+++       .+..+..+ ..+++++|+|||+.+...+
T Consensus       225 ~v~v~D~~t~~-------~~~~~~~~-~~~~~va~spdg~~l~va~  262 (301)
T d1l0qa2         225 TVSMIDTGTNK-------ITARIPVG-PDPAGIAVTPDGKKVYVAL  262 (301)
T ss_dssp             EEEEEETTTTE-------EEEEEECC-SSEEEEEECTTSSEEEEEE
T ss_pred             eeeeeecCCCe-------EEEEEcCC-CCEEEEEEeCCCCEEEEEE
Confidence            89999999987       77776644 4589999999999765433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.9e-17  Score=139.48  Aligned_cols=276  Identities=13%  Similarity=0.113  Sum_probs=143.1

Q ss_pred             eEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEEEcccCCCcc
Q psy4577          10 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQILSVVCVEPFD   89 (384)
Q Consensus        10 ~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~   89 (384)
                      .+++++.|++|+||++...+           ..+++.. ..|.+.|.+|+|+|||+++++++..|+.|++|++...... 
T Consensus         6 v~v~~~~~~~I~v~~~~~~~-----------~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~-   72 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG-----------ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-   72 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS-----------CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-
T ss_pred             EEEECCCCCcEEEEEEcCCC-----------CeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc-
Confidence            56888899999999997532           1233333 3577899999999999966667777999999998763110 


Q ss_pred             chhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeeccccccccceeecccccccc
Q psy4577          90 DAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNTPFLYDLVMTHALEWPS  164 (384)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~~~~~~~~~~~~~~~~~  164 (384)
                                 ..           ..........+..++|+|+|+.++     ++.+.+|+...................
T Consensus        73 -----------~~-----------~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  130 (333)
T d1ri6a_          73 -----------LT-----------FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGC  130 (333)
T ss_dssp             -----------EE-----------EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTB
T ss_pred             -----------EE-----------EeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccc
Confidence                       00           001111133466899999999887     667888876554433222211111112


Q ss_pred             eeeeeccCCCCCCC---CccceeEEEEeeec---------cCCCCeEEEEEeecCCCCcccccccccCcC-CCCCCccCC
Q psy4577         165 LTAQWLPDVTRPEG---KDYSIHRLILGTHT---------SDEQNHLLIASVQLPNEDAQFDASNYDTDK-GDFGGFGSV  231 (384)
Q Consensus       165 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~  231 (384)
                      ..+.+.++......   ....+..+......         ...........+.+++++............ ..+. ....
T Consensus       131 ~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~-~~~~  209 (333)
T d1ri6a_         131 HSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE-LKDP  209 (333)
T ss_dssp             CCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE-SSCT
T ss_pred             eEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEe-eccc
Confidence            23334444321000   00001000000000         000000011222333333222211111100 0000 0000


Q ss_pred             CCceeEE-EE------eecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEE
Q psy4577         232 SGKIEIE-IK------INHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLS  304 (384)
Q Consensus       232 ~~~~~~~-~~------~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  304 (384)
                      ....... ..      .........++++++++.+++++..++.+.+|++..       .+..........+...+.+++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~p~~~a  282 (333)
T d1ri6a_         210 HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE-------DGSVLSKEGFQPTETQPRGFN  282 (333)
T ss_dssp             TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT-------TSCCEEEEEEEECSSSCCCEE
T ss_pred             ccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcC-------CCCEEEEEEEeCCCCCeeEEE
Confidence            0111111 10      112345677899999987778888889999999863       122222223333445678999


Q ss_pred             eCCCCCCeEEEe-eCCCcEEEEecCC
Q psy4577         305 WNPSLNGYLLSA-SDDHTICLWDINA  329 (384)
Q Consensus       305 ~s~~~~~~l~s~-s~Dg~i~iwd~~~  329 (384)
                      |+||| ++|+++ +.+++|++|++..
T Consensus       283 ~spDG-k~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         283 VDHSG-KYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             ECTTS-SEEEEECTTTCEEEEEEEET
T ss_pred             EeCCC-CEEEEEECCCCeEEEEEEEC
Confidence            99999 665554 5679999996643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.70  E-value=1.6e-14  Score=123.48  Aligned_cols=82  Identities=6%  Similarity=-0.009  Sum_probs=62.9

Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC-eEEEeeCCCcEEEEecCCCCCCCccc
Q psy4577         259 VIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG-YLLSASDDHTICLWDINATPKENRVI  337 (384)
Q Consensus       259 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~  337 (384)
                      .+++...++.|.+||..        ++.  .+..+ .+...+..++|+|||.. ++++++.|++|++||+.+++      
T Consensus       290 ~~~~~~~~~~v~~~d~~--------t~~--~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~------  352 (373)
T d2madh_         290 AWKLHAAAKEVTSVTGL--------VGQ--TSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD------  352 (373)
T ss_pred             eEEeecCCCeEEEEECC--------CCc--EEEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC------
Confidence            45666778899999985        332  23333 35567899999999832 45789999999999999998      


Q ss_pred             cceeeeeccCCcEeEEEEecC
Q psy4577         338 DAKTIFTGHTAVVELELIERL  358 (384)
Q Consensus       338 ~~~~~~~~h~~~v~~~~~sp~  358 (384)
                       .+.++.++...-+.++..++
T Consensus       353 -~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         353 -QDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             -EEEEECCCCCCCcEEEEecC
Confidence             99999888777777776654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=5.1e-15  Score=125.57  Aligned_cols=94  Identities=11%  Similarity=0.045  Sum_probs=64.6

Q ss_pred             eEEEEEcCCCCcEEEEEeCC---------CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC-eEEEe
Q psy4577         247 VNRARYMPQNPCVIATKTPS---------SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG-YLLSA  316 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~-~l~s~  316 (384)
                      ...+++++++..++++....         ..|.+||..        ++.  .+..+. +...+.+++|+|||.. +++++
T Consensus       251 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~--------t~~--~~~~~~-~~~~~~~~a~spDG~~~l~v~~  319 (355)
T d2bbkh_         251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK--------TGE--RLAKFE-MGHEIDSINVSQDEKPLLYALS  319 (355)
T ss_dssp             SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT--------TCC--EEEEEE-EEEEECEEEECCSSSCEEEEEE
T ss_pred             eEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCC--------CCc--EEEEec-CCCCEEEEEEcCCCCeEEEEEE
Confidence            34588899986444433221         369999986        333  233443 3345889999999833 46778


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecC
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERL  358 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  358 (384)
                      +.|++|++||+++++       .+.++.++...-..+.+.++
T Consensus       320 ~~d~~i~v~D~~tg~-------~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         320 TGDKTLYIHDAESGE-------ELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             TTTTEEEEEETTTCC-------EEEEECCCCSSCCEEECCCC
T ss_pred             CCCCEEEEEECCCCC-------EEEEEeCcCCCccEEEeCCC
Confidence            889999999999998       88888876555555555544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=4.9e-13  Score=111.93  Aligned_cols=113  Identities=9%  Similarity=0.064  Sum_probs=71.2

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      |+|||||+.|++++..|+.|++|++...+.           .........+...+..++|+|+|++++++...++++++|
T Consensus        42 la~spDG~~L~v~~~~d~~i~~~~i~~~~~-----------~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          42 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDG-----------ALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTC-----------CEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEEeCCCC-----------cEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence            479999986556677799999999875321           111222223445677899999999554443457899999


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceeeeecccc
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYKIWKKNT  148 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~~w~~~~  148 (384)
                      +......             ...           .........+.++.++|+++.++     +..+.+|+...
T Consensus       111 ~~~~~~~-------------~~~-----------~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_         111 RLEDGLP-------------VGV-----------VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             EEETTEE-------------EEE-----------EEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccccccc-------------eec-----------ccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence            8865311             000           00001133466788999998766     55677777644

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=2.7e-13  Score=113.59  Aligned_cols=61  Identities=7%  Similarity=-0.129  Sum_probs=47.8

Q ss_pred             CCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcccccc
Q psy4577         295 GHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       295 ~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      .+...+..++++|++ .+++.+  |+.|++||+.+++       .+..+. +...+.+++|+|||+.+...+
T Consensus       238 ~~~~~~~~~~~~~~~-~~~~~~--~~~i~v~d~~~~~-------~~~~~~-~~~~~~~~~~s~dG~~l~v~~  298 (337)
T d1pbyb_         238 IMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNA-------SIKRVP-LPHSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             ECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTE-------EEEEEE-CSSCCCEEEECTTSCEEEEES
T ss_pred             CCCcceEEEEecccc-eEEEEc--cccEEEEECCCCc-------EEEEEc-CCCCEEEEEECCCCCEEEEEe
Confidence            355567788899997 577655  5899999999987       777664 567789999999999876553

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.37  E-value=1.2e-12  Score=111.25  Aligned_cols=125  Identities=14%  Similarity=0.078  Sum_probs=81.9

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCC---CceEEEEeCCCCCCeEEEeeCCC
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQ---KEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      ......+.++|+|+++++++..+++|.|||+.......  .+...+...+.++.   -.....+|.++| +.+.|...|.
T Consensus       257 gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~--~~~~~~~~~~~~~~~~glgplh~~fd~~g-~~yts~~~ds  333 (441)
T d1qnia2         257 PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLF--EDKIELRDTIVAEPELGLGPLHTTFDGRG-NAYTTLFIDS  333 (441)
T ss_dssp             BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHT--TTSSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTT
T ss_pred             CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHh--hccCCcceEEEeecccccCcccceecCCc-eEEEcccccc
Confidence            34467899999998778889999999999986321100  00111111122221   134556899998 7899999999


Q ss_pred             cEEEEecCCC------CCCCcccc--ceeeeeccCCcEeEEEEecCCCccccccccccc
Q psy4577         321 TICLWDINAT------PKENRVID--AKTIFTGHTAVVELELIERLTKKADPVCTLEKA  371 (384)
Q Consensus       321 ~i~iwd~~~~------~~~~~~~~--~~~~~~~h~~~v~~~~~sp~~~~~~~~c~~~~~  371 (384)
                      +|..|++...      .+..+.++  .++...||...+.+..++|||+.+.+.|-+.+-
T Consensus       334 ~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~d  392 (441)
T d1qnia2         334 QVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKD  392 (441)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGG
T ss_pred             eEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccc
Confidence            9999998421      11011111  112225899999999999999999998766544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.35  E-value=4.7e-11  Score=100.01  Aligned_cols=89  Identities=10%  Similarity=-0.038  Sum_probs=63.2

Q ss_pred             EEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCCCCCccccc
Q psy4577         260 IATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINATPKENRVIDA  339 (384)
Q Consensus       260 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  339 (384)
                      ++++..+..+.+||+.        .+. .....+..|...+..+.+++++ .+++.++. +.|++||..+++       .
T Consensus       223 ~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~v~v~d~~~~~-------~  284 (346)
T d1jmxb_         223 PATADLLYGYLSVDLK--------TGK-THTQEFADLTELYFTGLRSPKD-PNQIYGVL-NRLAKYDLKQRK-------L  284 (346)
T ss_dssp             -CCCEEEEEEEEEETT--------TCC-EEEEEEEECSSCEEEEEECSSC-TTEEEEEE-SEEEEEETTTTE-------E
T ss_pred             EeeccCCceEEEEECC--------CCc-eEEEEeecccceeEEEEEeCCC-CEEEEecC-CeEEEEECCCCc-------E
Confidence            3444445567777764        222 2233556688889999999998 57776664 589999999987       6


Q ss_pred             eeeeeccCCcEeEEEEecCCCccccccc
Q psy4577         340 KTIFTGHTAVVELELIERLTKKADPVCT  367 (384)
Q Consensus       340 ~~~~~~h~~~v~~~~~sp~~~~~~~~c~  367 (384)
                      +..+. +...+.+++|||||+.+...+.
T Consensus       285 ~~~~~-~~~~~~~va~s~DG~~l~v~~~  311 (346)
T d1jmxb_         285 IKAAN-LDHTYYCVAFDKKGDKLYLGGT  311 (346)
T ss_dssp             EEEEE-CSSCCCEEEECSSSSCEEEESB
T ss_pred             EEEEc-CCCCEEEEEEcCCCCEEEEEeC
Confidence            66665 4557999999999998776543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.33  E-value=2.8e-10  Score=96.49  Aligned_cols=59  Identities=14%  Similarity=0.066  Sum_probs=44.5

Q ss_pred             EeecCCceEEEEEcCCCCc-EEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCC
Q psy4577         240 KINHEGEVNRARYMPQNPC-VIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPS  308 (384)
Q Consensus       240 ~~~~~~~v~~v~~~p~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~  308 (384)
                      ...+...+..++|+|+|+. ++++++.|++|++||+.        +++  .+..+.++....+.|++.++
T Consensus       313 ~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~--------tg~--~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         313 QISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG--------AGD--QDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECC--------CCC--EEEEECCCCCCCcEEEEecC
Confidence            3456778999999999964 45788999999999986        443  46678777766777766543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.31  E-value=1.1e-10  Score=102.41  Aligned_cols=67  Identities=13%  Similarity=0.163  Sum_probs=52.2

Q ss_pred             CCCCCCCceEEEee---------CCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEe
Q psy4577           2 QWSPHNETILASSG---------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS   72 (384)
Q Consensus         2 ~fsp~~~~~lat~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s   72 (384)
                      +||||++ .||.++         .++.+.|||+.+               ..+..+..|.+.+..+.|||||+ .||. .
T Consensus        68 ~~SpDg~-~i~~~~~~~~~~r~s~~~~~~l~d~~~---------------~~~~~l~~~~~~~~~~~~SPDG~-~ia~-~  129 (470)
T d2bgra1          68 SISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLNK---------------RQLITEERIPNNTQWVTWSPVGH-KLAY-V  129 (470)
T ss_dssp             EECTTSS-EEEEEEEEEECSSSCEEEEEEEEETTT---------------TEECCSSCCCTTEEEEEECSSTT-CEEE-E
T ss_pred             EECCCCC-EEEEEECCcceeeeccCceEEEEECCC---------------CcccccccCCccccccccccCcc-eeeE-e
Confidence            6899998 567664         356788999986               23445678888999999999999 5555 5


Q ss_pred             cCCeEEEEEcccCC
Q psy4577          73 EDNIMQILSVVCVE   86 (384)
Q Consensus        73 ~D~~i~vwd~~~~~   86 (384)
                      .|+.+.+|+..+++
T Consensus       130 ~~~~l~~~~~~~g~  143 (470)
T d2bgra1         130 WNNDIYVKIEPNLP  143 (470)
T ss_dssp             ETTEEEEESSTTSC
T ss_pred             ecccceEEECCCCc
Confidence            67899999988763

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.29  E-value=8.6e-11  Score=99.70  Aligned_cols=80  Identities=3%  Similarity=0.027  Sum_probs=55.3

Q ss_pred             EEEEEcCCCCcEEEEEeCC--------CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCC-eEEEeeC
Q psy4577         248 NRARYMPQNPCVIATKTPS--------SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNG-YLLSASD  318 (384)
Q Consensus       248 ~~v~~~p~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~-~l~s~s~  318 (384)
                      ..++++|++..+++....+        ..|.+||..        ++.  .+..+. +...+.+++|+|||.. ++++++.
T Consensus       267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~--------t~~--~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~  335 (368)
T d1mdah_         267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS--------VGQ--TSGPIS-NGHDSDAIIAAQDGASDNYANSAG  335 (368)
T ss_dssp             SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS--------SCC--EEECCE-EEEEECEEEECCSSSCEEEEEETT
T ss_pred             eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC--------CCc--EeEEec-CCCceeEEEECCCCCEEEEEEeCC
Confidence            4577888886444443322        358899986        333  333333 3456889999999843 4678888


Q ss_pred             CCcEEEEecCCCCCCCccccceeeeec
Q psy4577         319 DHTICLWDINATPKENRVIDAKTIFTG  345 (384)
Q Consensus       319 Dg~i~iwd~~~~~~~~~~~~~~~~~~~  345 (384)
                      |++|++||..+++       .+.++.-
T Consensus       336 ~~~v~v~D~~tgk-------~~~~i~~  355 (368)
T d1mdah_         336 TEVLDIYDAASDQ-------DQSSVEL  355 (368)
T ss_dssp             TTEEEEEESSSCE-------EEEECCC
T ss_pred             CCeEEEEECCCCC-------EEEEEEC
Confidence            9999999999998       7777763

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.25  E-value=1.2e-10  Score=98.02  Aligned_cols=56  Identities=11%  Similarity=0.033  Sum_probs=39.1

Q ss_pred             cCCceEEEEEcCCCCc-EEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCC
Q psy4577         243 HEGEVNRARYMPQNPC-VIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPS  308 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~  308 (384)
                      +...+.+++|+|+|+. ++++++.|+.|++||+.        +++  .+.++.++...-..+.+.++
T Consensus       298 ~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~--------tg~--~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE--------SGE--ELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EEEEECEEEECCSSSCEEEEEETTTTEEEEEETT--------TCC--EEEEECCCCSSCCEEECCCC
T ss_pred             CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC--------CCC--EEEEEeCcCCCccEEEeCCC
Confidence            4456889999999964 56778889999999986        443  45567666554455555443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.11  E-value=7e-09  Score=85.00  Aligned_cols=230  Identities=8%  Similarity=-0.052  Sum_probs=130.0

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++++|||. ++++...+++|..|+...               . ...+......+.+++|.++|. ++++...++.+..|
T Consensus        33 iAv~pdG~-l~vt~~~~~~I~~i~p~g---------------~-~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~   94 (302)
T d2p4oa1          33 LASAPDGT-IFVTNHEVGEIVSITPDG---------------N-QQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVV   94 (302)
T ss_dssp             EEECTTSC-EEEEETTTTEEEEECTTC---------------C-EEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEE
T ss_pred             EEECCCCC-EEEEeCCCCEEEEEeCCC---------------C-EEEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEE
Confidence            46799997 899999899998888653               1 122234456799999999999 77787788888888


Q ss_pred             EcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee----cceeeeeccccccccceee
Q psy4577          81 SVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI----NEEYKIWKKNTPFLYDLVM  156 (384)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----d~~v~~w~~~~~~~~~~~~  156 (384)
                      +.......            ..           .+...........+++.++++.++    .+.+..++......     
T Consensus        95 ~~~~~~~~------------~~-----------~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~-----  146 (302)
T d2p4oa1          95 SLVKSDGT------------VE-----------TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG-----  146 (302)
T ss_dssp             EEECTTSC------------EE-----------EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE-----
T ss_pred             Eecccccc------------ee-----------eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcc-----
Confidence            77543110            00           000111122355777888876654    22222222111100     


Q ss_pred             cccccccceeeeeccCCCCCCCCccceeEEEEeeeccCCCCeEEEEEeecCCCCcccccccccCcCCCCCCccCCCCcee
Q psy4577         157 THALEWPSLTAQWLPDVTRPEGKDYSIHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASNYDTDKGDFGGFGSVSGKIE  236 (384)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  236 (384)
                                                                 .+....              ......           
T Consensus       147 -------------------------------------------~~~~~~--------------~~~~~~-----------  158 (302)
T d2p4oa1         147 -------------------------------------------SIWLEH--------------PMLARS-----------  158 (302)
T ss_dssp             -------------------------------------------EEEEEC--------------GGGSCS-----------
T ss_pred             -------------------------------------------eeEecC--------------Ccccee-----------
Confidence                                                       000000              000000           


Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEe
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSA  316 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~  316 (384)
                        .........+.+.++.  ..++++.+.++.|+.+++....       .......+ .+......+++.++| +++++.
T Consensus       159 --~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~-------~~~~~~~~-~~~~~pdgia~d~dG-~l~va~  225 (302)
T d2p4oa1         159 --NSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTD-------KPGEPEIF-VEQTNIDDFAFDVEG-NLYGAT  225 (302)
T ss_dssp             --STTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTS-------CBCCCEEE-EESCCCSSEEEBTTC-CEEEEC
T ss_pred             --eccCcccccccccccC--CceeeecCCCCeEEeccccccc-------cccccccc-cCCCCCcceEECCCC-CEEEEE
Confidence              0001112345666654  3577888889999998885321       11111111 123345679999999 788888


Q ss_pred             eCCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEE---ecCCCccc
Q psy4577         317 SDDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELI---ERLTKKAD  363 (384)
Q Consensus       317 s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~---sp~~~~~~  363 (384)
                      ..+++|..++......      .+......-...++++|   +||++.+.
T Consensus       226 ~~~~~V~~i~p~G~~~------~~~~~~~~~~~pt~vafg~~~~D~~~Ly  269 (302)
T d2p4oa1         226 HIYNSVVRIAPDRSTT------IIAQAEQGVIGSTAVAFGQTEGDCTAIY  269 (302)
T ss_dssp             BTTCCEEEECTTCCEE------EEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             cCCCcEEEECCCCCEE------EEEecCCCCCCceEEEEcCCCCCCCEEE
Confidence            8899999998765320      22333333455889999   66776554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.07  E-value=1.4e-09  Score=92.04  Aligned_cols=116  Identities=4%  Similarity=-0.232  Sum_probs=69.8

Q ss_pred             CCCCCCCceE--EEeeCCCe--EEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEE------
Q psy4577           2 QWSPHNETIL--ASSGTDRR--LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV------   71 (384)
Q Consensus         2 ~fsp~~~~~l--at~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~------   71 (384)
                      +..++++...  +++..++.  |.+||..+              .+++.+..++...  .++|+|||+.+ +.+      
T Consensus        26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~--------------~~~~~~~~~~~~~--~~a~spDg~~i-~~~~~~~~~   88 (368)
T d1mdah_          26 GPGAISRRSHITLPAYFAGTTENWVSCAGC--------------GVTLGHSLGAFLS--LAVAGHSGSDF-ALASTSFAR   88 (368)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTT--------------TEEEEEEEECTTC--EEEECTTSSCE-EEEEEEETT
T ss_pred             ccCCCCcceeEEeeccCCCcceEEEEeCCC--------------CcEEEEEeCCCCC--cceECCCCCEE-EEEcccCcc
Confidence            4566766422  33444554  55668765              4666666666544  58999999944 443      


Q ss_pred             ----ecCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee-----cceee
Q psy4577          72 ----SEDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI-----NEEYK  142 (384)
Q Consensus        72 ----s~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----d~~v~  142 (384)
                          +.|++|++||..+++...             .........  ...    ......++|+|||+.++     ++.+.
T Consensus        89 ~~~g~~d~~v~v~D~~t~~~~~-------------~i~~p~~~~--~~~----g~~p~~~a~SpDGk~l~va~~~~~~v~  149 (368)
T d1mdah_          89 SAKGKRTDYVEVFDPVTFLPIA-------------DIELPDAPR--FSV----GPRVHIIGNCASSACLLFFLFGSSAAA  149 (368)
T ss_dssp             TTSSSEEEEEEEECTTTCCEEE-------------EEEETTSCS--CCB----SCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred             ccccccCCeEEEEECCCCcEee-------------eecCCccce--ecc----cCCccceEECCCCCEEEEEeCCCCeEE
Confidence                357889999998753211             111000000  000    11234689999999886     68899


Q ss_pred             eeccccccccc
Q psy4577         143 IWKKNTPFLYD  153 (384)
Q Consensus       143 ~w~~~~~~~~~  153 (384)
                      +||..+.....
T Consensus       150 ~~d~~~~~~~~  160 (368)
T d1mdah_         150 GLSVPGASDDQ  160 (368)
T ss_dssp             EEEETTTEEEE
T ss_pred             EEECCCCcEeE
Confidence            99987765543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=4.3e-07  Score=72.61  Aligned_cols=98  Identities=8%  Similarity=0.017  Sum_probs=65.1

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeC---
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASD---  318 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~---  318 (384)
                      .+........|+|+++.++.....++...+|.....      .+   .. .+..+........||||| ++|+-.+.   
T Consensus       168 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~------~~---~~-~~~~~~~~~~~p~~SPDG-~~i~f~s~~~~  236 (269)
T d2hqsa1         168 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA------TG---GV-QVLSSTFLDETPSLAPNG-TMVIYSSSQGM  236 (269)
T ss_dssp             CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT------TC---CE-EECCCSSSCEEEEECTTS-SEEEEEEEETT
T ss_pred             cccccccccccccccceeEEEeecCCceeeeEeecc------cc---cc-eEeecCccccceEECCCC-CEEEEEEcCCC
Confidence            345566778899999866666666667777665421      11   11 233345566788999999 66664443   


Q ss_pred             CCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecC
Q psy4577         319 DHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERL  358 (384)
Q Consensus       319 Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  358 (384)
                      ...|+++++..+.        ...+....+.+...+|||-
T Consensus       237 ~~~l~~~~~dg~~--------~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         237 GSVLNLVSTDGRF--------KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEEEETTSCC--------EEECCCSSSEEEEEEECCC
T ss_pred             CcEEEEEECCCCC--------EEEEeCCCCcEEeEEeCCC
Confidence            3578899998764        3445556778889999994

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.94  E-value=3.3e-09  Score=92.84  Aligned_cols=103  Identities=10%  Similarity=-0.008  Sum_probs=75.6

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeC---------CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeE
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTP---------SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYL  313 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l  313 (384)
                      |...|.++.||||++ .|+.++.         ++.+.|||+.        .+.   +..+..|...+..+.||||| .+|
T Consensus        60 ~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~s~~~~~~l~d~~--------~~~---~~~l~~~~~~~~~~~~SPDG-~~i  126 (470)
T d2bgra1          60 FGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYDIYDLN--------KRQ---LITEERIPNNTQWVTWSPVG-HKL  126 (470)
T ss_dssp             SSSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEEEEETT--------TTE---ECCSSCCCTTEEEEEECSST-TCE
T ss_pred             ccCccceeEECCCCC-EEEEEECCcceeeeccCceEEEEECC--------CCc---ccccccCCccccccccccCc-cee
Confidence            456788999999996 6666643         5678999986        332   33567788899999999999 688


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccccceeeeec------------------cCCcEeEEEEecCCCcccccc
Q psy4577         314 LSASDDHTICLWDINATPKENRVIDAKTIFTG------------------HTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       314 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~------------------h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      |.. .|+.+++|+..+++       ..+....                  ..+....+.|||||+.++...
T Consensus       127 a~~-~~~~l~~~~~~~g~-------~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         127 AYV-WNNDIYVKIEPNLP-------SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             EEE-ETTEEEEESSTTSC-------CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             eEe-ecccceEEECCCCc-------eeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence            885 57799999999886       3332211                  223456688999999877654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.78  E-value=4.2e-06  Score=68.48  Aligned_cols=102  Identities=8%  Similarity=-0.031  Sum_probs=69.4

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcc-ce----eeecCCCCceEEEEeCCCCCCeEEEeeCCC
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECH-PD----LRLRGHQKEGYGLSWNPSLNGYLLSASDDH  320 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~----~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg  320 (384)
                      ..+.++|+|+++.++++-+..+.|+.|++...       +... +.    ..........-.+++.++| ++.++....+
T Consensus       178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~-------g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g  249 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETTANRLHRIALEDD-------GVTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQG  249 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-------SSSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTT
T ss_pred             eeeeeeeccccceEEEecccCCceEEEEEcCC-------CceeccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCC
Confidence            45789999999767777788899999998532       1111 11    0111112235689999999 7888888899


Q ss_pred             cEEEEecCCCCCCCccccceeeee------ccCCcEeEEEEecCCCccc
Q psy4577         321 TICLWDINATPKENRVIDAKTIFT------GHTAVVELELIERLTKKAD  363 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~sp~~~~~~  363 (384)
                      .|.++|. .++       .+..+.      ++...+++++|.|....+.
T Consensus       250 ~V~~~~p-~G~-------~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~  290 (319)
T d2dg1a1         250 RVLVFNK-RGY-------PIGQILIPGRDEGHMLRSTHPQFIPGTNQLI  290 (319)
T ss_dssp             EEEEECT-TSC-------EEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred             EEEEECC-CCc-------EEEEEeCCCcCCCcCceeeeEEEeCCCCEEE
Confidence            9999996 455       555443      3445688999988776543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.72  E-value=1.3e-05  Score=65.24  Aligned_cols=102  Identities=13%  Similarity=0.088  Sum_probs=71.3

Q ss_pred             ceEEEEEcCCCC----cEEEEEeCCCcEEEEecCCCCCCCCCCCCcc---ceeeecCC-CCceEEEEeCCCCCCeEEEee
Q psy4577         246 EVNRARYMPQNP----CVIATKTPSSDVLVFDYTKHPSKPDPNGECH---PDLRLRGH-QKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       246 ~v~~v~~~p~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~h-~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      .-+.++|+|++.    .++++-+..+.|+.||+..       .+...   ....+.+. ....-.+++..+| +++++..
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~-------~g~~~~~~~~~~~~~~~~~~pdGiavD~~G-nlyVa~~  244 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG-------PAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANW  244 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE-------TTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccC-------ccccceeeEEEEccccccccceeeEEecCC-cEEEEEc
Confidence            357899988763    3667777888999998752       12111   11122222 2235689999999 6888877


Q ss_pred             CCCcEEEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         318 DDHTICLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       318 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      ..+.|.+||.+.+.       .+..+.......++++|.|+++.+
T Consensus       245 ~~g~I~~~dp~~g~-------~~~~i~~p~~~~t~~afg~d~~~l  282 (314)
T d1pjxa_         245 GSSHIEVFGPDGGQ-------PKMRIRCPFEKPSNLHFKPQTKTI  282 (314)
T ss_dssp             TTTEEEEECTTCBS-------CSEEEECSSSCEEEEEECTTSSEE
T ss_pred             CCCEEEEEeCCCCE-------EEEEEECCCCCEEEEEEeCCCCEE
Confidence            88999999998876       666666556778999999988754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.72  E-value=4.3e-07  Score=76.75  Aligned_cols=68  Identities=12%  Similarity=0.024  Sum_probs=44.8

Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEecCC
Q psy4577         250 ARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWDINA  329 (384)
Q Consensus       250 v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~  329 (384)
                      +.+.|+|+ ++.. +.++.+.|++...          ...+..+..+.. ...++++|||..+++++..|++|.|||+..
T Consensus       223 ~~~~~dGk-~~~v-~~~~v~vvd~~~~----------~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         223 AAAVKAGN-FKTI-GDSKVPVVDGRGE----------SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             HHHHHTTC-CBCC-TTCCCCEEECSSS----------CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             EEEecCCC-EEEe-CCCCcEEEEcccC----------CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            44567785 4444 4467777776531          123334444443 568999999944567788999999999875


Q ss_pred             C
Q psy4577         330 T  330 (384)
Q Consensus       330 ~  330 (384)
                      .
T Consensus       290 ~  290 (441)
T d1qnia2         290 L  290 (441)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.69  E-value=5.7e-06  Score=69.11  Aligned_cols=113  Identities=9%  Similarity=0.050  Sum_probs=70.0

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee--cCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL--RGHQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      ..+.++.|+|+|+.++++......|++|+...       .+........  .........++|+|++..+.++.-.+++|
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~-------~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V  217 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLA-------SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI  217 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECT-------TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccC-------CCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEE
Confidence            34789999999975555555566888888642       2222222222  22345678999999995444666678999


Q ss_pred             EEEecCCCCCCCccccceeee--------------eccCCcEeEEEEecCCCcccccc
Q psy4577         323 CLWDINATPKENRVIDAKTIF--------------TGHTAVVELELIERLTKKADPVC  366 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~--------------~~h~~~v~~~~~sp~~~~~~~~c  366 (384)
                      .+|++...+..  .......+              ..+......+.++|+|+.+....
T Consensus       218 ~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         218 CEYVIDPATHM--PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             EEEEECTTTCC--EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             EEEEecCCCce--EEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            99999876421  00011111              01223456789999999876553

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.64  E-value=4.2e-06  Score=69.93  Aligned_cols=77  Identities=8%  Similarity=0.091  Sum_probs=45.9

Q ss_pred             ceEEEEEcCCCCcEEEEEeCC-----CcEEEEecCCCCCCCCCCCCccce---eeecCCCCceEEEEeCC-CCCCeE-EE
Q psy4577         246 EVNRARYMPQNPCVIATKTPS-----SDVLVFDYTKHPSKPDPNGECHPD---LRLRGHQKEGYGLSWNP-SLNGYL-LS  315 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~---~~~~~h~~~i~~~~~s~-~~~~~l-~s  315 (384)
                      ....+.++|+|+.++++...+     +.|..|++..       .+.....   ............++++| +| ++| ++
T Consensus       256 ~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~-------~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G-~~l~va  327 (365)
T d1jofa_         256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-------CGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMAIT  327 (365)
T ss_dssp             EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-------TSCEEEEEEEEECSSCCTTCCCEEECTTCT-TEEEEE
T ss_pred             CccceEECCCCCEEEEEcccCCCccceEEEEEEecC-------CCceeeEeEeeEEEcCCCCccEEEecCCCC-CEEEEE
Confidence            356788999997444543322     2377777642       1211111   11122334567899998 77 555 55


Q ss_pred             eeCCCcEEEEecCCC
Q psy4577         316 ASDDHTICLWDINAT  330 (384)
Q Consensus       316 ~s~Dg~i~iwd~~~~  330 (384)
                      ...++.|.+|+++..
T Consensus       328 ~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         328 DDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSSCEEEEEEEETT
T ss_pred             eCCCCeEEEEEEeCC
Confidence            567899999998654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.51  E-value=1.4e-05  Score=63.20  Aligned_cols=97  Identities=6%  Similarity=-0.033  Sum_probs=65.4

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEEe
Q psy4577         247 VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLWD  326 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd  326 (384)
                      ..+++++|++. ++++...++.|..++..         +..... .....-.....|++.++| .++++....+.|..++
T Consensus       142 p~~i~~~~~g~-~~v~~~~~~~i~~~d~~---------~~~~~~-~~~~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         142 PDGVAVDNSGN-VYVTDTDNNRVVKLEAE---------SNNQVV-LPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             CCEEEECTTCC-EEEEEGGGTEEEEECTT---------TCCEEE-CCCSSCCSEEEEEECTTC-CEEEEETTTTEEEEEC
T ss_pred             cceeeecCCCC-Eeeeccccccccccccc---------cceeee-eeccccCCCccceeeeee-eeeeeecCCCEEEEEe
Confidence            46789999985 88887888889999874         222111 112333456899999998 7888888889999888


Q ss_pred             cCCCCCCCccccceeeeeccCCcEeEEEEecCCCcc
Q psy4577         327 INATPKENRVIDAKTIFTGHTAVVELELIERLTKKA  362 (384)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  362 (384)
                      .....       ........-....+|++.++|...
T Consensus       210 ~~~~~-------~~~~~~~~~~~P~~i~~d~~g~l~  238 (260)
T d1rwia_         210 AGSTT-------STVLPFTGLNTPLAVAVDSDRTVY  238 (260)
T ss_dssp             TTCSC-------CEECCCCSCCCEEEEEECTTCCEE
T ss_pred             CCCCe-------EEEEccCCCCCeEEEEEeCCCCEE
Confidence            76543       111111222456789999988643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.43  E-value=0.00022  Score=57.18  Aligned_cols=107  Identities=7%  Similarity=-0.015  Sum_probs=72.9

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      .-+.++|++++..++++-+..+.|..|++.......  .+.......+.+-.+....+++..+| ++.++.-..+.|..|
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~--~~~~~~~~~~~~~~g~pdG~~vD~~G-nlWva~~~~g~V~~~  225 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP--TGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRY  225 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB--SSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEE
T ss_pred             CcceeeecCCCceEEEeecccceeeEeeeccccccc--ccceEEEeccCcccccccceEEcCCC-CEEeeeeCCCceEEe
Confidence            457899999998778888888999999885321110  11111222334445567899999998 677766667899999


Q ss_pred             ecCCCCCCCccccceeeeeccCCcEeEEEEe-cCCCccc
Q psy4577         326 DINATPKENRVIDAKTIFTGHTAVVELELIE-RLTKKAD  363 (384)
Q Consensus       326 d~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~  363 (384)
                      |.. ++       .+..+.--...+++++|- |+.+.+.
T Consensus       226 dp~-G~-------~~~~i~lP~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         226 DTD-GN-------HIARYEVPGKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             CTT-CC-------EEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred             cCC-Cc-------EeeEecCCCCceEEEEEeCCCCCEEE
Confidence            964 55       666665445568999996 5655544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.42  E-value=0.0001  Score=58.69  Aligned_cols=76  Identities=9%  Similarity=0.142  Sum_probs=51.9

Q ss_pred             CCceEEEEEcCCCCcEEEEEe-CCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         244 EGEVNRARYMPQNPCVIATKT-PSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      .....+|++.++|. ++++-. .++.|.+|+.         ++.................|++.|+| .+++ ++.+++|
T Consensus       199 ~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~---------~G~~~~~~~~~~~~~~p~~vav~~dG-~l~V-~~~n~~v  266 (279)
T d1q7fa_         199 TNYPIGVGINSNGE-ILIADNHNNFNLTIFTQ---------DGQLISALESKVKHAQCFDVALMDDG-SVVL-ASKDYRL  266 (279)
T ss_dssp             SCSEEEEEECTTCC-EEEEECSSSCEEEEECT---------TSCEEEEEEESSCCSCEEEEEEETTT-EEEE-EETTTEE
T ss_pred             ccCCcccccccCCe-EEEEECCCCcEEEEECC---------CCCEEEEEeCCCCCCCEeEEEEeCCC-cEEE-EeCCCeE
Confidence            34567899999995 776644 3557999985         45432222222233457899999998 5555 5678999


Q ss_pred             EEEecCCCC
Q psy4577         323 CLWDINATP  331 (384)
Q Consensus       323 ~iwd~~~~~  331 (384)
                      ++|......
T Consensus       267 ~~fr~~~~~  275 (279)
T d1q7fa_         267 YIYRYVQLA  275 (279)
T ss_dssp             EEEECSCCC
T ss_pred             EEEEeeeec
Confidence            999988764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=5.1e-05  Score=60.03  Aligned_cols=56  Identities=16%  Similarity=0.173  Sum_probs=36.9

Q ss_pred             ecCCceEEEEEcCCCCcEEEEEeC--CCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCC
Q psy4577         242 NHEGEVNRARYMPQNPCVIATKTP--SSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPS  308 (384)
Q Consensus       242 ~~~~~v~~v~~~p~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~  308 (384)
                      .+........|+|+|+.++.+...  ...|+++++.         +..  ...+....+.+...+|||-
T Consensus       211 ~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d---------g~~--~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         211 SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD---------GRF--KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT---------SCC--EEECCCSSSEEEEEEECCC
T ss_pred             ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC---------CCC--EEEEeCCCCcEEeEEeCCC
Confidence            345566788999999855555433  3457788874         332  2345556677888999983

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=7.5e-06  Score=70.66  Aligned_cols=107  Identities=11%  Similarity=0.231  Sum_probs=61.5

Q ss_pred             CCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEec-ccccceEEEEEccCCCcEEEEE--------e
Q psy4577           2 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWVICSV--------S   72 (384)
Q Consensus         2 ~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-gh~~~V~~l~~~~~~~~~l~s~--------s   72 (384)
                      .|.+++. ++. -..||.|.+||+.+..            .+.+.... -..-.+....||||++++|+..        +
T Consensus        23 ~W~~~~~-~~~-~~~~g~i~~~~~~~~~------------~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s   88 (465)
T d1xfda1          23 KWISDTE-FIY-REQKGTVRLWNVETNT------------STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS   88 (465)
T ss_dssp             CBSSSSC-BCC-CCSSSCEEEBCGGGCC------------CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred             EEeCCCc-EEE-EeCCCcEEEEECCCCC------------EEEEEcCccccccccceeEECCCCCeEEEEEcccceeEee
Confidence            5777775 443 3457889999998632            22222111 1223567788999999665543        3


Q ss_pred             cCCeEEEEEcccCCCccchhheeeeeeeEEEeccCCcccccceeeeeeccCeeEEEEecCceeee---cceeeeecc
Q psy4577          73 EDNIMQILSVVCVEPFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVI---NEEYKIWKK  146 (384)
Q Consensus        73 ~D~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---d~~v~~w~~  146 (384)
                      ..+.+.++|+.++...             .+ ..          .......+....|+|+|+.++   ++.+.+.+.
T Consensus        89 ~~~~~~i~d~~~~~~~-------------~l-~~----------~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~  141 (465)
T d1xfda1          89 YTGYYVLSKIPHGDPQ-------------SL-DP----------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAH  141 (465)
T ss_dssp             CCSEEEEEESSSCCCE-------------EC-CC----------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred             ccccEEEEEccCCcee-------------ec-cC----------ccCCccccceeeeccCCceEEEEecceEEEEec
Confidence            3467777787764210             00 00          000122344578999998876   666555444

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.26  E-value=0.00012  Score=59.11  Aligned_cols=71  Identities=14%  Similarity=0.171  Sum_probs=48.9

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      ++|+|+|. ++++...++.+.+|+.....          .....+.. .......+.+++.+++. ++++-+.++.+..+
T Consensus        73 la~~~dG~-l~v~~~~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~  139 (302)
T d2p4oa1          73 LAFTSNGD-LVATGWNADSIPVVSLVKSD----------GTVETLLT-LPDAIFLNGITPLSDTQ-YLTADSYRGAIWLI  139 (302)
T ss_dssp             EEECTTSC-EEEEEECTTSCEEEEEECTT----------SCEEEEEE-CTTCSCEEEEEESSSSE-EEEEETTTTEEEEE
T ss_pred             EEEcCCCC-eEEEecCCceEEEEEecccc----------cceeeccc-cCCccccceeEEccCCC-EEeeccccccceee
Confidence            46899997 78888788888888875421          11122222 22345689999999998 77777778888777


Q ss_pred             Eccc
Q psy4577          81 SVVC   84 (384)
Q Consensus        81 d~~~   84 (384)
                      +...
T Consensus       140 ~~~~  143 (302)
T d2p4oa1         140 DVVQ  143 (302)
T ss_dssp             ETTT
T ss_pred             eccC
Confidence            7765

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.21  E-value=0.00031  Score=56.84  Aligned_cols=73  Identities=15%  Similarity=0.335  Sum_probs=54.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEEE
Q psy4577         246 EVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICLW  325 (384)
Q Consensus       246 ~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~iw  325 (384)
                      ....+++.++| +++++....+.|++||..        .+.  .+..+.......++++|.|++..+++|.+.+|+|...
T Consensus       227 ~pdGiavD~~G-nlyVa~~~~g~I~~~dp~--------~g~--~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         227 GADGMDFDEDN-NLLVANWGSSHIEVFGPD--------GGQ--PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             EEEEEEEBTTC-CEEEEEETTTEEEEECTT--------CBS--CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cceeeEEecCC-cEEEEEcCCCEEEEEeCC--------CCE--EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            35678999999 487777778899999863        222  2334444556789999999984477888888998888


Q ss_pred             ecCC
Q psy4577         326 DINA  329 (384)
Q Consensus       326 d~~~  329 (384)
                      ++..
T Consensus       296 ~~~~  299 (314)
T d1pjxa_         296 EWQR  299 (314)
T ss_dssp             ECSS
T ss_pred             ECCC
Confidence            8754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.14  E-value=0.00029  Score=55.28  Aligned_cols=72  Identities=4%  Similarity=-0.104  Sum_probs=48.3

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTICL  324 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~i  324 (384)
                      .....|++.++| +++++...++.|..++..         +..... .....-.....|+++++| .++++-..+++|+.
T Consensus       182 ~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~~---------~~~~~~-~~~~~~~~P~~i~~d~~g-~l~vad~~~~rI~~  249 (260)
T d1rwia_         182 TAPWGIAVDEAG-TVYVTEHNTNQVVKLLAG---------STTSTV-LPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVK  249 (260)
T ss_dssp             CSEEEEEECTTC-CEEEEETTTTEEEEECTT---------CSCCEE-CCCCSCCCEEEEEECTTC-CEEEEEGGGTEEEE
T ss_pred             CCCccceeeeee-eeeeeecCCCEEEEEeCC---------CCeEEE-EccCCCCCeEEEEEeCCC-CEEEEECCCCEEEE
Confidence            345789999998 488888888888888763         221111 111222356799999998 68888777777765


Q ss_pred             EecC
Q psy4577         325 WDIN  328 (384)
Q Consensus       325 wd~~  328 (384)
                      .+..
T Consensus       250 i~~~  253 (260)
T d1rwia_         250 LTSL  253 (260)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            5544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.13  E-value=0.00055  Score=54.03  Aligned_cols=55  Identities=15%  Similarity=0.101  Sum_probs=35.7

Q ss_pred             CCCC--CCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecC
Q psy4577           3 WSPH--NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED   74 (384)
Q Consensus         3 fsp~--~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D   74 (384)
                      .||+  |+.++.++  ++.|.+.|+...              + ...+..+.+.+...+|||||+.+.++...+
T Consensus         6 ~sPdi~G~~v~f~~--~~dl~~~d~~~g--------------~-~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~   62 (281)
T d1k32a2           6 LNPDIHGDRIIFVC--CDDLWEHDLKSG--------------S-TRKIVSNLGVINNARFFPDGRKIAIRVMRG   62 (281)
T ss_dssp             EEEEEETTEEEEEE--TTEEEEEETTTC--------------C-EEEEECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred             cCCCCCCCEEEEEe--CCcEEEEECCCC--------------C-EEEEecCCCcccCEEECCCCCEEEEEEeeC
Confidence            4899  98544443  456888888752              1 223345566789999999999665554433

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.97  E-value=0.0023  Score=50.54  Aligned_cols=99  Identities=12%  Similarity=0.116  Sum_probs=69.9

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeee--cCCCCceEEEEeCCCCCCeEEEeeC-C
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRL--RGHQKEGYGLSWNPSLNGYLLSASD-D  319 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~~~~s~~~~~~l~s~s~-D  319 (384)
                      +......+++.+++ +++++....+.|++||.         .+..  +.++  .+.......|++.++| +++++-.. +
T Consensus       155 ~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~---------~G~~--~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~  221 (279)
T d1q7fa_         155 HLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNY---------EGQY--LRQIGGEGITNYPIGVGINSNG-EILIADNHNN  221 (279)
T ss_dssp             TCSSEEEEEECSSS-EEEEEEGGGTEEEEEET---------TCCE--EEEESCTTTSCSEEEEEECTTC-CEEEEECSSS
T ss_pred             cccccceeeeccce-eEEeeeccccceeeeec---------CCce--eeeecccccccCCcccccccCC-eEEEEECCCC
Confidence            45567889999998 58888888999999997         3432  2233  3344567899999999 67776544 5


Q ss_pred             CcEEEEecCCCCCCCccccceeeeec--cCCcEeEEEEecCCCcc
Q psy4577         320 HTICLWDINATPKENRVIDAKTIFTG--HTAVVELELIERLTKKA  362 (384)
Q Consensus       320 g~i~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~  362 (384)
                      +.|.+++.. ++       .+.++..  .......|+..|+|...
T Consensus       222 ~~v~~f~~~-G~-------~~~~~~~~~~~~~p~~vav~~dG~l~  258 (279)
T d1q7fa_         222 FNLTIFTQD-GQ-------LISALESKVKHAQCFDVALMDDGSVV  258 (279)
T ss_dssp             CEEEEECTT-SC-------EEEEEEESSCCSCEEEEEEETTTEEE
T ss_pred             cEEEEECCC-CC-------EEEEEeCCCCCCCEeEEEEeCCCcEE
Confidence            579999854 44       5655543  22357889999998643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.013  Score=49.76  Aligned_cols=85  Identities=8%  Similarity=-0.003  Sum_probs=46.0

Q ss_pred             eEEE-EEcCCCCcEEEEEeCCC--cEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEE-EeeC--CC
Q psy4577         247 VNRA-RYMPQNPCVIATKTPSS--DVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLL-SASD--DH  320 (384)
Q Consensus       247 v~~v-~~~p~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~-s~s~--Dg  320 (384)
                      |..+ .|++.+..++.++..++  .-.+|.++...     ......+...........++.|||++ .+++ +++.  --
T Consensus       361 V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g-----~~~~~~lt~~~~~~~~~~~~~~S~~~-~y~v~~~s~~~~P  434 (465)
T d1xfda1         361 VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG-----NFNRQCLSCDLVENCTYFSASFSHSM-DFFLLKCEGPGVP  434 (465)
T ss_dssp             EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST-----TCCCBCSSTTSSSSCCCCEEEECTTS-SEEEEECCSSSSC
T ss_pred             EEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCC-----CCcceeeccccCCCCCEEEEEECCCC-CEEEEEeecCCCC
Confidence            4443 57787766666666443  33455554211     11111111111233456799999999 5655 3332  35


Q ss_pred             cEEEEecCCCCCCCccccceeeee
Q psy4577         321 TICLWDINATPKENRVIDAKTIFT  344 (384)
Q Consensus       321 ~i~iwd~~~~~~~~~~~~~~~~~~  344 (384)
                      .+.+++..+++       .+..|.
T Consensus       435 ~~~~~~~~~~~-------~~~~Le  451 (465)
T d1xfda1         435 MVTVHNTTDKK-------KMFDLE  451 (465)
T ss_dssp             CEEEEETTTCC-------EEEEEE
T ss_pred             eEEEEECCCCC-------EEEEEc
Confidence            67888887776       666664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.26  E-value=0.031  Score=44.77  Aligned_cols=60  Identities=18%  Similarity=0.193  Sum_probs=41.6

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec----CCCCceEEEEeCCCCCCeEEEee
Q psy4577         247 VNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR----GHQKEGYGLSWNPSLNGYLLSAS  317 (384)
Q Consensus       247 v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~h~~~i~~~~~s~~~~~~l~s~s  317 (384)
                      ...+++.++| ++.++...++.|.+||-         .+.......+.    ++...+++++|.|++. .|+...
T Consensus       230 PdGl~vD~~G-~l~Va~~~~g~V~~~~p---------~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~-~~~~t~  293 (319)
T d2dg1a1         230 PDSCCIDSDD-NLYVAMYGQGRVLVFNK---------RGYPIGQILIPGRDEGHMLRSTHPQFIPGTN-QLIICS  293 (319)
T ss_dssp             EEEEEEBTTC-CEEEEEETTTEEEEECT---------TSCEEEEEECTTGGGTCSCBCCEEEECTTSC-EEEEEE
T ss_pred             eeeeeEcCCC-CEEEEEcCCCEEEEECC---------CCcEEEEEeCCCcCCCcCceeeeEEEeCCCC-EEEEEc
Confidence            4678999999 58888888999999995         45433323333    3455688999999874 444443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.44  E-value=0.006  Score=47.72  Aligned_cols=96  Identities=10%  Similarity=0.086  Sum_probs=58.0

Q ss_pred             EEcCC--CCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEee-CCC-----cE
Q psy4577         251 RYMPQ--NPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSAS-DDH-----TI  322 (384)
Q Consensus       251 ~~~p~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s-~Dg-----~i  322 (384)
                      ..+|+  |+.++.+ + +|.|.+.|+.        .+..   ..+..+.+.+...+||||| +.||-.+ .++     .|
T Consensus         5 ~~sPdi~G~~v~f~-~-~~dl~~~d~~--------~g~~---~~Lt~~~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~i   70 (281)
T d1k32a2           5 LLNPDIHGDRIIFV-C-CDDLWEHDLK--------SGST---RKIVSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADL   70 (281)
T ss_dssp             CEEEEEETTEEEEE-E-TTEEEEEETT--------TCCE---EEEECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEE
T ss_pred             ccCCCCCCCEEEEE-e-CCcEEEEECC--------CCCE---EEEecCCCcccCEEECCCC-CEEEEEEeeCCCCCceEE
Confidence            35688  8644444 3 4568888885        3332   3456667778999999999 6776443 222     47


Q ss_pred             EEEecCCCCCCCccccceeee----eccCCcEeEEEEecCCCccccc
Q psy4577         323 CLWDINATPKENRVIDAKTIF----TGHTAVVELELIERLTKKADPV  365 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~sp~~~~~~~~  365 (384)
                      .+.+..+++..     .+...    ...........|+|+++.++..
T Consensus        71 ~~~~~~~g~~~-----~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          71 YFYNGENGEIK-----RITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEEETTTTEEE-----ECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EEEEecCCceE-----EeeecCCCccCccccccccccCCCCCEEEEE
Confidence            77777766410     11111    1122345678999999876543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.26  Score=37.88  Aligned_cols=76  Identities=8%  Similarity=-0.076  Sum_probs=50.8

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCc-cceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGEC-HPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ...+++++.+.+..++.+-...+.|...++.         +.. ..+...........+|++..+  .++.+-..++.|+
T Consensus       164 ~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d---------G~~~~~~~~~~~~~~~p~~lav~~~--~ly~td~~~~~I~  232 (266)
T d1ijqa1         164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIF  232 (266)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSCEEEEECTTTTSSEEEEEEETT--EEEEEETTTTEEE
T ss_pred             ceeeEEEeeccccEEEEecCCcCEEEEEECC---------CCCEEEEEeCCCcccccEEEEEECC--EEEEEECCCCeEE
Confidence            4568899998776677776778899988884         332 222222222234567887743  4666666788998


Q ss_pred             EEecCCCC
Q psy4577         324 LWDINATP  331 (384)
Q Consensus       324 iwd~~~~~  331 (384)
                      ..+..+++
T Consensus       233 ~~~~~~g~  240 (266)
T d1ijqa1         233 SANRLTGS  240 (266)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCc
Confidence            88888776

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.15  E-value=0.065  Score=43.91  Aligned_cols=85  Identities=13%  Similarity=0.090  Sum_probs=53.9

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCcc-ceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECH-PDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      ......+.++|+|+++++++..+.++-|+|+++............ .+..-......-...+|...| ....|---|.+|
T Consensus       274 pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v  352 (459)
T d1fwxa2         274 ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQV  352 (459)
T ss_dssp             ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEE
T ss_pred             CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCc-eEEEEeeccceE
Confidence            344668899999998888888999999999963111000000000 010111122244567898887 677777789999


Q ss_pred             EEEecCC
Q psy4577         323 CLWDINA  329 (384)
Q Consensus       323 ~iwd~~~  329 (384)
                      .-|++..
T Consensus       353 ~kw~~~~  359 (459)
T d1fwxa2         353 VKWNIED  359 (459)
T ss_dssp             EEEEHHH
T ss_pred             EEEecch
Confidence            9999853

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.95  E-value=0.68  Score=36.01  Aligned_cols=77  Identities=12%  Similarity=0.049  Sum_probs=50.7

Q ss_pred             CCCCCCCCceEEEeeCCCeEEEeecCCcCcccccCCCCCCCCeeEEEecccccceEEEEEccCCCcEEEEEecCCeEEEE
Q psy4577           1 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIL   80 (384)
Q Consensus         1 v~fsp~~~~~lat~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~l~~~~~~~~~l~s~s~D~~i~vw   80 (384)
                      +.|+|++..++++-+..+.|..+++......      ............+-.+....+++..+|. +.++.-..+.|..+
T Consensus       153 ~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~------~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~  225 (295)
T d2ghsa1         153 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGL------PTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRY  225 (295)
T ss_dssp             EEECTTSCEEEEEETTTCEEEEEEBCTTTCC------BSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEE
T ss_pred             eeecCCCceEEEeecccceeeEeeecccccc------cccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEe
Confidence            3688999877777788889999887532110      0011233333444455678899999998 66555566789898


Q ss_pred             Eccc
Q psy4577          81 SVVC   84 (384)
Q Consensus        81 d~~~   84 (384)
                      |...
T Consensus       226 dp~G  229 (295)
T d2ghsa1         226 DTDG  229 (295)
T ss_dssp             CTTC
T ss_pred             cCCC
Confidence            8754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.06  E-value=1.6  Score=34.58  Aligned_cols=31  Identities=13%  Similarity=0.172  Sum_probs=26.9

Q ss_pred             CceEEEEEcCCCCcEEEEEeCCCcEEEEecC
Q psy4577         245 GEVNRARYMPQNPCVIATKTPSSDVLVFDYT  275 (384)
Q Consensus       245 ~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~  275 (384)
                      ...+.|+++|+++.++++-+..+.|++|++.
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence            4578999999998788888889999999985

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.16  E-value=4.1  Score=30.70  Aligned_cols=101  Identities=9%  Similarity=0.013  Sum_probs=63.8

Q ss_pred             CCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcEE
Q psy4577         244 EGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTIC  323 (384)
Q Consensus       244 ~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i~  323 (384)
                      ...+.+++|.+..+.++.+-..++.|+..++.         +.... ..+...-..+.++++..-+..+..+-...+.|.
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~---------g~~~~-~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~  104 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLH---------GGEPT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIE  104 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESS---------SCCCE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcc---------cCCcE-EEEEeccccccEEEEeccCCeEEEeccCCCEEE
Confidence            34578899998876677776777889888874         22222 122222345788888765524555666678999


Q ss_pred             EEecCCCCCCCccccceeeeeccCCcEeEEEEecCCCc
Q psy4577         324 LWDINATPKENRVIDAKTIFTGHTAVVELELIERLTKK  361 (384)
Q Consensus       324 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  361 (384)
                      +.++....       ....+.........++..|....
T Consensus       105 ~~~~dg~~-------~~~l~~~~l~~p~~l~vdp~~g~  135 (263)
T d1npea_         105 VAKMDGTQ-------RRVLFDTGLVNPRGIVTDPVRGN  135 (263)
T ss_dssp             EEETTSCS-------CEEEECSSCSSEEEEEEETTTTE
T ss_pred             EEecCCce-------EEEEecccccCCcEEEEecccCc
Confidence            99998654       32222223345677777776653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.77  E-value=6  Score=31.12  Aligned_cols=34  Identities=15%  Similarity=0.163  Sum_probs=27.4

Q ss_pred             CceEEEEeCCCCCCeEEEeeCCCcEEEEecCCCC
Q psy4577         298 KEGYGLSWNPSLNGYLLSASDDHTICLWDINATP  331 (384)
Q Consensus       298 ~~i~~~~~s~~~~~~l~s~s~Dg~i~iwd~~~~~  331 (384)
                      ...+.|+++||+..++++-...++|++|++....
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            4578999999985566777788999999998654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.35  E-value=6  Score=29.77  Aligned_cols=105  Identities=10%  Similarity=0.028  Sum_probs=60.4

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCCCcE
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDDHTI  322 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~Dg~i  322 (384)
                      ....+.+++|++..+.++.+-..++.|+-.++....      ........+...-..+.++++.+.+.++..+-...++|
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~------~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I  101 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH------GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV  101 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCC------CCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEE
Confidence            445677899998776666665567777776664210      11111112222234566788876553566666677899


Q ss_pred             EEEecCCCCCCCccccceeeeeccCCcEeEEEEecCCC
Q psy4577         323 CLWDINATPKENRVIDAKTIFTGHTAVVELELIERLTK  360 (384)
Q Consensus       323 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  360 (384)
                      .+.++....       ....+.........++..|...
T Consensus       102 ~v~~~~g~~-------~~~~~~~~~~~P~~l~vd~~~g  132 (266)
T d1ijqa1         102 SVADTKGVK-------RKTLFRENGSKPRAIVVDPVHG  132 (266)
T ss_dssp             EEEETTSSS-------EEEEEECTTCCEEEEEEETTTT
T ss_pred             EeEecCCce-------EEEEEcCCCCCcceEEEEcccC
Confidence            999998765       3333333344456666666443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=84.64  E-value=2.9  Score=33.35  Aligned_cols=77  Identities=5%  Similarity=-0.035  Sum_probs=49.1

Q ss_pred             cCCceEEEEEcCCCCcEEEEEeCC-CcEEEEecCCCCCCCCCCCCccceeeecCCCCceEEEEeCCCCCCeEEEeeCC--
Q psy4577         243 HEGEVNRARYMPQNPCVIATKTPS-SDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGYGLSWNPSLNGYLLSASDD--  319 (384)
Q Consensus       243 ~~~~v~~v~~~p~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s~~~~~~l~s~s~D--  319 (384)
                      +.......++.+++. +++.|+.+ ..+.+||..        .........+.... .-..++..+|| ++++.|+.+  
T Consensus        74 ~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~--------~~~w~~~~~~~~~r-~~~~~~~~~dG-~v~v~GG~~~~  142 (387)
T d1k3ia3          74 HDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSS--------SDSWIPGPDMQVAR-GYQSSATMSDG-RVFTIGGSWSG  142 (387)
T ss_dssp             CCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGG--------GTEEEECCCCSSCC-SSCEEEECTTS-CEEEECCCCCS
T ss_pred             cccceeEEEEecCCc-EEEeecCCCcceeEecCc--------cCcccccccccccc-cccceeeecCC-ceeeecccccc
Confidence            333345667889995 88887655 689999986        33333322222221 22356677888 688888754  


Q ss_pred             ----CcEEEEecCCC
Q psy4577         320 ----HTICLWDINAT  330 (384)
Q Consensus       320 ----g~i~iwd~~~~  330 (384)
                          ..+.+||..+.
T Consensus       143 ~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         143 GVFEKNGEVYSPSSK  157 (387)
T ss_dssp             SSCCCCEEEEETTTT
T ss_pred             ccccceeeeecCCCC
Confidence                46899998875

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.50  E-value=8.8  Score=31.53  Aligned_cols=63  Identities=13%  Similarity=0.276  Sum_probs=40.6

Q ss_pred             EEEEeecCCceEEEEEcCCCCcEEEEEeCCCcEEEEecCCCCCCCCCCCCccceeeec------CCCCceEEEEeCCC
Q psy4577         237 IEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLR------GHQKEGYGLSWNPS  308 (384)
Q Consensus       237 ~~~~~~~~~~v~~v~~~p~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------~h~~~i~~~~~s~~  308 (384)
                      +......-..-++|+|.|++. +|++--..|.|++++..        .+....+..+.      .-+.....|+++|+
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~-llVter~~G~i~~v~~~--------~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPE--------SGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTT--------TCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             EEEEECCCCCceEEEEeCCCe-EEEEEecCCEEEEEECC--------CCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            333333345678999999995 88875457999998864        33333333221      12346789999995