Psyllid ID: psy4578

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860
Protein Sequence
MGDKDAGSWDKESRVMFTPDFLIVGTVHSDGKVDESKISEIASKVCESTFPSEALSQGAVACIKNAVNDLASNIANVAQNIQDIDPPLLAKPEEPKVKRERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKDFYIAPENSKVHTDCLTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNATLINIVFALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEFSLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAPVSPPADQKPKFKSLPDESDADSPPLNFQVPPVYIEGERNMWNKLLSLAANDKIESDILALESELLPVFRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPFKK
Secondary Structure (PSIPRED)
ccccccccccccccEEEcccEEEEEEEEcccccccccHHHHccccccccccccccccccHHEEccHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEccHHHHccccHHHcccHHHHHHcccccHHHHHHccccccccccccccccccccccHHHHHHHccccHHHcccccEEEEEcEEEEEccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcHHHHHHHHHHHHHHcccEEEEEEcccEEEEEEccccccccccccccccHHHHHHHHHcccccEEEEcccccHHHHccccccccHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHcccEEEcccccccEEEEcccccccccHHHHHHHHHHccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccEEEEEEcccEEEEEcccccEEEEEccccccEEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEccccccccccEEEEcccccEEEEEEccccccEEEEEEcccccccHHHHHHccccccEEEEEcccccccccEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEccccccccEEcccccccEEEEEEccccccEEEEEEccccEEEEEccccccccccccccccccccEEEccccccccEEEEEccccccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEccccccEEEccEEEEccccEEEEccccccHHEEcccccccEEEEEcccccEEEEEEEccccHHHHcccccccccEEEEccccccEEEEccccccEEEEcccccccccEEccccccccEEEEEccccccccccccccHccccccccccccccccHHHHHHHHHHcHHHHccccEEEEEcccEEEccccEEEcccccccccccHEHEHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccEEEEEEcccHHHHHHHcccccccHHHHHHHHHHccccHHHHHcccHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHEEEccccccccEEEccccccccccHHHHHHHHHcccccHHHHHHcccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEcccccccccccccccccccccccccccccccEEEccccccccccccEEEcccccccEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEEccccccccccEEEccccccEEEEEEcccccEEEEEcccccEEEEEEEccccccccEEEEEEccccccEEEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEcccccccccEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEEcc
Coil and Loop (DISEMBL)
mgdkdagswdkesrvmftpdflivgtvhsdgkvdeSKISEIASKVcestfpsealsQGAVACIKNAVNDLASNIANVAQniqdidppllakpeepkvkrerDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKdfyiapenskvhtdcltslsDEALSTLFAVKADLVDQKFELKINevrfvghptlvqsdikdkdsnaTLINIVFALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSleegdrmsaSGYELIIKQSDIAQNIKKVYDELVTSGLVYIKINknhqlsfclpqkVHKLYCKGIMMEPELIDKCMKnlkpyhgllllteptrlldslypdsstplIKLIKMysplksiqtlsadtslplVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMqafpghsllheisefslpislkhrisplsypheqREISQMIVWMLQHRLLMQLHTYmflapvsppadqkpkfkslpdesdadspplnfqvppvyieGERNMWNKLLSLAANDKIESDILALESELLpvfrklpstvTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESlfgsvaddqklmiwdtrshnvskpshtvdahtaevnclsfnpysEYILAtgsadktqfeveEEEEENYDQKLMIwdtrshnvskpshtvdahtaevnclsfnpysEYILATGSADKTVALWDLRNLKlklhsfeshkdeifqvqwsphnetilassgtdrrlhvwdlskigeeqstedaedgppellfihgghtakisdfswnpnepwvicsvsednimqkpfkk
Flexible Loop (DISEMBL)
mgdkdagswdkesrvmftPDFLIVGTVHSDGKVDESKISEIASKVCESTFPSEALSQGAVACIKNAVNDLASNIANVAQniqdidppllakpeepkvkrerdikdlkillrskqeeigeisvrkdlaesklanairdkdyqeQKLKDFYIAPENSKVHTDCLTSLSDEALSTLFAVKADLVDQKFELKinevrfvghptlvqsdikdkdsNATLINIVFAlhavarpsIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIKINKnhqlsfclpQKVHKLYCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEFSLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAPVSPPADQKPKFKSLPdesdadspplNFQVPPVYIEGERNMWNKLLSLAANDKIESDILALESELLPVFRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIlassgtdrrlHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSvsednimqkpfkk
Low Complexity Region (SEG)
MGDKDAGSWDKESRVMFTPDFLIVGTVHSDGKVDESKISEIASKVCESTFPSEALSQGAVACIKNAVNDLASNIANVAQNIQDIDPPLLAKPEEPKVKRERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKDFYIAPENSKVHTDCLTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNATLINIVFALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELIDKCMKNLKPYHGllllteptrlldslYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEFSLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAPVSPPADQKPKFKSLPDESDADSPPLNFQVPPVYIEGERNMWNKLLSLAANDKIESDILALESELLPVFRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFeveeeeeeNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPFKK
Disordered region (IsUnstruct)
**************VMFTPDFLIVGTVHSDGKV******EIASKVCESTFPSEALSQGAVACIKNAVNDLASNIANVAQNIQDI***********************IL******************************Y*EQKLKDFYIAPENSKVHTDCLTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNATLINIVFALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEFSLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAP**************************FQVPPVYIEGERNMWNKLLSLAANDKIESDILALESELLPVFRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV****HTVDAHTAEVNCLSFNPYSEYILATG*******************KLMIWDT**********TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS*****************LLFIHGGHTAKISDFSWNPNEPWVICSVS***********
Disordered Region (DISOPRED)
**********KESRVMFTPDFLIVGTVHSDGKVDESKISEIASKVC*****************KNAVNDLASNIANVAQNIQDIDPPLL***************DLKILLRSKQE***********************************************TSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHP***************LINIVFALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDI*****************LIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEF*****************EQREISQMIVWMLQHRLLMQLHTYMFLAPVSPPADQKPKFKSLPDESDADSPPLNFQVPPVYIEGERNMWNKLLSLAANDKIESDILALESELLPVFRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE********DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPF**
Disordered Region (DISEMBL)
*********DKESRVMFTPDFLIVGTVHSDGKVDESKISEIASKVCESTFPSEALSQGAVACIKNAVNDLASNIANVAQNIQDIDPPLLAKPEEPKVKRERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKDFYIAPENSKVHTDCLTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNATLINIVFALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEFSLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAPVSPP******************PPLNFQVPPVYIEGERNMWNKLLSLAANDKIESDILALESELLPVFRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH*********DAHTAEVNCLSFNPYSEYILATGSA***************DQKLMIWDTRSH*********DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE*********GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPFKK
Disordered Region (DISPRO)
*****AGSWDKESRVMFTPDFLIVGTVHSDGKVDESKISEIASKVCESTFPSEALSQGAVACIKNAVNDLASNIANVAQNIQDIDPPLLAKPEEPKVKRERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDK******LKDFYIAPENSKVHTDCLTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNATLINIVFALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEFSLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAPVSPPA************SDADSPPLNFQVPPVYIEGERNMWNKLLSLAANDKIESDILALESELLPVFRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPFKK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDKDAGSWDKESRVMFTPDFLIVGTVHSDGKVDESKISEIASKVCESTFPSEALSQGAVACIKNAVNDLASNIANVAQNIQDIDPPLLAKPEEPKVKRERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKDFYIAPENSKVHTDCLTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNATLINIVFALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEFSLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAPVSPPADQKPKFKSLPDESDADSPPLNFQVPPVYIEGERNMWNKLLSLAANDKIESDILALESELLPVFRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPFKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	860	2.2.26 [Sep-21-2011]
Q9VUB4	610	Nitrogen permease regulat	yes	N/A	0.533	0.752	0.416	9e-99
Q24572	430	Probable histone-binding	no	N/A	0.234	0.469	0.728	4e-87
Q8VIJ8	569	Nitrogen permease regulat	yes	N/A	0.520	0.787	0.363	6e-86
Q6P3H7	424	Histone-binding protein R	yes	N/A	0.246	0.5	0.706	8e-86
O93377	425	Histone-binding protein R	N/A	N/A	0.232	0.470	0.735	1e-85
Q6INH0	425	Histone-binding protein R	N/A	N/A	0.232	0.470	0.735	1e-85
Q5M7K4	425	Histone-binding protein R	yes	N/A	0.232	0.470	0.735	1e-85
Q60972	425	Histone-binding protein R	no	N/A	0.232	0.470	0.735	1e-85
Q09028	425	Histone-binding protein R	yes	N/A	0.232	0.470	0.735	1e-85
Q3MHL3	425	Histone-binding protein R	yes	N/A	0.232	0.470	0.735	1e-85

>sp|Q9VUB4|NPRL3_DROME Nitrogen permease regulator 3-like protein OS=Drosophila melanogaster GN=CG8783 PE=1 SV=1

 Score =  362 bits (928), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 216/519 (41%), Positives = 297/519 (57%), Gaps = 60/519 (11%)

Query: 162 LTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNA---TLINIV 218
           L   +DE LS LFAVK  L +QKFELK+N+VRFV HPTL+    +     A    LINIV
Sbjct: 74  LQGFADEVLSALFAVKPQLCNQKFELKLNDVRFVSHPTLIPQKEQRSGPMAKQQMLINIV 133

Query: 219 FALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYE 278
           FALHA A  SIVKCY++LSKRLG ALK+EE+R  Y  +    +  +  E+  +      E
Sbjct: 134 FALHAQASYSIVKCYHELSKRLGLALKFEEQRSGYLTEQTAQMARTHDEQQQQPLERTLE 193

Query: 279 LIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELIDK 338
           LI ++  +AQ ++ ++ +L T+GL+   +N N  L FCLP K H+L+ KG M++PE ID+
Sbjct: 194 LIAERCSLAQALRSIFHDLCTTGLLSTSLNHNLTLCFCLPAKAHQLHKKGSMVDPETIDR 253

Query: 339 CMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVEIS 398
           C++ LKPYHG+LLL +   LLD + P  +  L +L+ +Y PL S+Q++S++  L +  + 
Sbjct: 254 CLRALKPYHGMLLLVDFAELLDCVPPTGARMLWQLVDVYDPLISLQSMSSNADLSIEHVY 313

Query: 399 SLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEFSL 458
            L+  LVYW KA++I+PLC +NVYV+A DA  HT S LVEKF   F G SL   IS+FSL
Sbjct: 314 KLVSHLVYWAKATIIYPLCETNVYVIAPDAPLHTKSHLVEKFSARFAGMSLFEVISDFSL 373

Query: 459 PISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYM-FLAPVSPPADQKPKFKSLP 517
           P S+ H  +PL  P  Q  ++QM++WMLQH LLMQLHTY+ F+       D       L 
Sbjct: 374 PTSIGHLTTPLQQPARQGILAQMVIWMLQHHLLMQLHTYVQFMPSEDEFGDSASCSNHLR 433

Query: 518 D---------ESDAD----------SPPLNFQVPPVYIEGERNMWNKLLSLAANDKIE-- 556
           D         E DAD          S PL   VP V + G R   ++  S  A+D I   
Sbjct: 434 DAISDEEGDQEPDADELHGSMLSMSSHPL--PVPAVLVGGHRREASEDHSSLASDNIAVQ 491

Query: 557 -----------------SDILALES--------ELLPVF--------RKLPSTVTQEDLK 583
                             +  +L+S        ELL VF        R++P++   +DL 
Sbjct: 492 PSSSHKSNFSITASMSTDNCDSLDSMEDEQKLKELLQVFSDADRAAIRRIPASANVDDLS 551

Query: 584 LFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLR 622
           L +  ++ GYFK  HH+EE+MY EN  R+Q+ QLLDK R
Sbjct: 552 LLVKLYQMGYFKSEHHLEEIMYFENLRRSQLLQLLDKFR 590

Drosophila melanogaster (taxid: 7227)

>sp|Q24572|CAF1_DROME Probable histone-binding protein Caf1 OS=Drosophila melanogaster GN=Caf1 PE=1 SV=1

 Score =  323 bits (828), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 161/221 (72%), Positives = 176/221 (79%), Gaps = 19/221 (8%)

Query: 639 SVADDQKLMIWDT----RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE 694
           S +DD  + +WD     + H V    +    HTA V  ++++   E +  +  AD     
Sbjct: 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS-VAD----- 252

Query: 695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
                    DQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILATGSADKTVA
Sbjct: 253 ---------DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303

Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
           LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363

Query: 815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           EDGPPELLFIHGGHTAKISDFSWNPNEPW+ICSVSEDNIMQ
Sbjct: 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the nucleosome remodeling and deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; the nucleosome remodeling factor (NURF) complex, which catalyzes ATP-dependent nucleosome sliding and facilitates transcription of chromatin; and the polycomb group (PcG) repressor complex ESC-E(Z), which promotes repression of homeotic genes during development. Also required for transcriptional repression of E2F target genes by E2f2 and Rbf or Rbf2.

Drosophila melanogaster (taxid: 7227)

>sp|Q8VIJ8|NPRL3_MOUSE Nitrogen permease regulator 3-like protein OS=Mus musculus GN=Nprl3 PE=2 SV=1

 Score =  319 bits (817), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 187/515 (36%), Positives = 291/515 (56%), Gaps = 67/515 (13%)

Query: 163 TSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQ--------SDIKDKDSNATL 214
           +  SD  L+T+ A K+++  QKFELKI+ VRFVGHPTL+Q        +D   K    T+
Sbjct: 62  SRFSDVILATILATKSEMCGQKFELKIDNVRFVGHPTLLQHALGQVSKTDPSPKREAPTM 121

Query: 215 I--NIVFALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIV-----LSSLE 267
           I  N+VFAL A A PS++ C ++LS+R+   L++EE R  Y  + A  I+     +S++ 
Sbjct: 122 ILFNVVFALRANADPSVINCLHNLSRRIATVLQHEERRCQYLTREAKLILALQDEVSAMA 181

Query: 268 EGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCK 327
           + +    S ++ I+ +  +A+++K+ YD L TSG+V + IN   ++SFCLP K+H  Y  
Sbjct: 182 DANEGPQSPFQHILPKCKLARDLKEAYDSLCTSGVVRLHINSWLEVSFCLPHKIH--YAA 239

Query: 328 GIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLS 387
             ++ PE I++ +K ++PYH LLLL++   LL  L  D S  L+++IK  S +K++Q L+
Sbjct: 240 SSLIPPEAIERSLKAIRPYHALLLLSDEKSLLSELPIDCSPALVRVIKTTSAVKNLQQLA 299

Query: 388 ADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGH 447
            D  L L+++  L   LVYWGKA +I+PLC +NVYV++ +AS    S L E+F + FP H
Sbjct: 300 QDADLALLQVFQLAAHLVYWGKAVIIYPLCENNVYVMSPNASVCLYSPLAEQFSRQFPSH 359

Query: 448 SLLHEISEFSLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAPVSPPA 507
            L   +++FSLP+SL    SPL+ P ++ ++ QM+VWMLQ RLL+QLHTY+ L  ++ P+
Sbjct: 360 DLPSVLAKFSLPVSLSEFRSPLAPPAQETQLIQMVVWMLQRRLLIQLHTYVCL--MASPS 417

Query: 508 DQKPKFKSLPDESDADSPPLNFQVPPVYIEGERNMWNKLLSLAANDKIESDILALES--- 564
           +++P+ +        D  P   +V      G R++     +L+      SD + L S   
Sbjct: 418 EEEPRLRE-------DDVPFTARV------GGRSLSTP-NALSFGSPTSSDDMTLTSPSM 463

Query: 565 -----ELLP------------------------VFRKLPSTVTQEDLKLFLNFFKQGYFK 595
                ELLP                            +P+    EDL++F       YF+
Sbjct: 464 DNSSAELLPSGDSPLNKRMTENLLASLSEHERAAILNVPAAQNPEDLRMFARLLH--YFR 521

Query: 596 GTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWH 630
           G HH+EE+MY EN  R+Q+  L DK R ++ V  H
Sbjct: 522 GRHHLEEIMYNENTRRSQLLMLFDKFRSVLVVTTH 556

Mus musculus (taxid: 10090)

>sp|Q6P3H7|RBBP4_DANRE Histone-binding protein RBBP4 OS=Danio rerio GN=rbbp4 PE=2 SV=3

 Score =  318 bits (816), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 166/235 (70%), Positives = 181/235 (77%), Gaps = 23/235 (9%)

Query: 627 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSE 680
           ++W+    S   S +DD  + +WD  +  V K    VDA      HTA V  +S++   E
Sbjct: 183 LSWNPNLRSCLLSASDDHTICLWDIST--VPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE 240

Query: 681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS 740
            +  +  AD              DQKLMIWDTRS+N SKPSH VDAHTAEVNCLSFNPYS
Sbjct: 241 SLFGS-VAD--------------DQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYS 285

Query: 741 EYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 800
           E+ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VW
Sbjct: 286 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345

Query: 801 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           DLSKIGEEQS EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct: 346 DLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Danio rerio (taxid: 7955)

>sp|O93377|RBP4A_XENLA Histone-binding protein RBBP4-A OS=Xenopus laevis GN=rbbp4-a PE=1 SV=3

 Score =  318 bits (816), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/223 (73%), Positives = 177/223 (79%), Gaps = 23/223 (10%)

Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
           S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct: 195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248

Query: 693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                      DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct: 249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297

Query: 753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
           VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357

Query: 813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct: 358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus laevis (taxid: 8355)

>sp|Q6INH0|RBP4B_XENLA Histone-binding protein RBBP4-B OS=Xenopus laevis GN=rbbp4-b PE=1 SV=3

 Score =  318 bits (815), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/223 (73%), Positives = 177/223 (79%), Gaps = 23/223 (10%)

Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
           S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct: 195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248

Query: 693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                      DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct: 249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297

Query: 753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
           VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357

Query: 813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct: 358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus laevis (taxid: 8355)

>sp|Q5M7K4|RBBP4_XENTR Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3

 Score =  318 bits (815), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/223 (73%), Positives = 177/223 (79%), Gaps = 23/223 (10%)

Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
           S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct: 195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248

Query: 693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                      DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct: 249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297

Query: 753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
           VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357

Query: 813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct: 358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus tropicalis (taxid: 8364)

>sp|Q60972|RBBP4_MOUSE Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=5

 Score =  318 bits (815), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/223 (73%), Positives = 177/223 (79%), Gaps = 23/223 (10%)

Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
           S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct: 195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248

Query: 693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                      DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct: 249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297

Query: 753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
           VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357

Query: 813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct: 358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Mus musculus (taxid: 10090)

>sp|Q09028|RBBP4_HUMAN Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3

 Score =  318 bits (815), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/223 (73%), Positives = 177/223 (79%), Gaps = 23/223 (10%)

Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
           S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct: 195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248

Query: 693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                      DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct: 249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297

Query: 753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
           VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357

Query: 813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct: 358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Homo sapiens (taxid: 9606)

>sp|Q3MHL3|RBBP4_BOVIN Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3

 Score =  318 bits (815), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/223 (73%), Positives = 177/223 (79%), Gaps = 23/223 (10%)

Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
           S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct: 195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248

Query: 693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                      DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct: 249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297

Query: 753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
           VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357

Query: 813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct: 358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	860
242012898	566	conserved hypothetical protein [Pediculu	0.530	0.805	0.453	1e-109
345498203	550	PREDICTED: nitrogen permease regulator 3	0.513	0.803	0.449	1e-101
345498205	531	PREDICTED: nitrogen permease regulator 3	0.505	0.819	0.460	1e-101
194870668	610	GG13742 [Drosophila erecta] gi|190654479	0.531	0.749	0.418	2e-97
24664016	610	CG8783, isoform A [Drosophila melanogast	0.533	0.752	0.416	6e-97
91090272	578	PREDICTED: similar to UPF0171 protein CG	0.577	0.859	0.419	7e-97
195327480	610	GM24565 [Drosophila sechellia] gi|195590	0.533	0.752	0.416	9e-97
157114810	619	hypothetical protein AaeL_AAEL001124 [Ae	0.406	0.565	0.490	2e-96
16769370	610	LD28428p [Drosophila melanogaster]	0.532	0.750	0.415	3e-96
195494235	610	GE20037 [Drosophila yakuba] gi|194180851	0.533	0.752	0.414	5e-96

>gi|242012898|ref|XP_002427162.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511445|gb|EEB14424.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/496 (45%), Positives = 313/496 (63%), Gaps = 40/496 (8%)

Query: 155 SKVHTDCLTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSN--- 211
           S V    LT L+DE LS LFAVK +L ++KFELKIN+VRFVGHPTL  S +   D +   
Sbjct: 61  SNVVKGNLTGLTDELLSKLFAVKPELYERKFELKINDVRFVGHPTLFHSGLDRNDRSIGN 120

Query: 212 -----------ATLINIVFALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYA------ 254
                      A LIN VFALH+ A  SIVKCYYDLSKR+G ALK+EE+R  Y       
Sbjct: 121 IQSVNHSDIPSAILINTVFALHSYASHSIVKCYYDLSKRIGTALKHEEKRCCYVTNQTKV 180

Query: 255 LQAAHDIVLSSLEEG-DRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQL 313
           + AAHD +   + +  D    S +ELI+ +S +A+++KKVYD L+++GLV+I+INK  ++
Sbjct: 181 MIAAHDEIAQRIADTTDGNCESPFELILCRSSLAKDLKKVYDNLISTGLVHIRINKWIEV 240

Query: 314 SFCLPQKVHKL--YCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLI 371
           SFCLPQKVH++    +G ++EP +IDKC+++++PYHGLLLL +P  L +S  PDSS  L+
Sbjct: 241 SFCLPQKVHQISPVKRGFLVEPNVIDKCLESIRPYHGLLLLVDPIELFESSPPDSSPALL 300

Query: 372 KLIKMYSPLKSIQTLSADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTH 431
           +LI+ YSPLKS+Q L+AD  + L+ +  L G +VYW +A VI+P+C +N+YVVA +A TH
Sbjct: 301 RLIQFYSPLKSLQALAADADITLMHVFQLTGHMVYWAQAMVIYPICENNIYVVAPEAPTH 360

Query: 432 TNSSLVEKFMQAFPGHSLLHEISEFSLPISLKHRISPLSYPHEQREISQMIVWMLQHRLL 491
            +SSLVE+F + FPG +LL  +SEFSLP SL  +++PL    +QR++ QMI WMLQHRLL
Sbjct: 361 ASSSLVERFNEKFPGENLLQLMSEFSLPTSLSQKLTPLVPQLQQRQLIQMIAWMLQHRLL 420

Query: 492 MQLHTYMFLAPVSPPADQKPKFKS---LPDESDADSPPLNFQVPPVYI--EGERNMWNKL 546
            QLHTY+   P S    Q  KF +   L  ES      LN       +  E E++   K 
Sbjct: 421 FQLHTYIHFMPGS--NGQPTKFNTKGNLELESKNQKSKLNTSYNNFSLNHEEEKSSIVKK 478

Query: 547 LSLAANDKIESDILALESELLPVFRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYL 606
           L +   ++ E D +            +P++   +DL L ++ F +GY  G HHIEE+MY 
Sbjct: 479 LLIEYFNQEERDAIC----------SVPASSNSDDLYLLISMFAKGYLSGKHHIEEIMYS 528

Query: 607 ENKTRAQICQLLDKLR 622
            N  R  + Q+ DK +
Sbjct: 529 MNIKRCHLLQIFDKFK 544

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345498203|ref|XP_003428178.1| PREDICTED: nitrogen permease regulator 3-like protein-like isoform 2 [Nasonia vitripennis]

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/481 (44%), Positives = 308/481 (64%), Gaps = 39/481 (8%)

Query: 162 LTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNATLINIVFAL 221
           LT LSDE LSTLFAVK +L + KFELK+N+VRFVGHPTL+ S    + +++ L N+VFAL
Sbjct: 66  LTGLSDEVLSTLFAVKPELCECKFELKLNDVRFVGHPTLLPSRGPKEVNSSMLFNVVFAL 125

Query: 222 HAVARPSIVKCYYDLSKRLGKALKYEEERYNY------ALQAAHDIVLSSLEEGDRMSAS 275
            A A  S+VKCYYDLS+RLG AL++EE R  +       + + HD V +  EE      S
Sbjct: 126 QAQASHSVVKCYYDLSRRLGIALRHEERRCGFLTEEIKIMVSTHDEVAARSEEESDSDES 185

Query: 276 GYELIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPEL 335
            YE I+++S +A+++K +++ L TSG++ I I+K  Q+SFCLPQKVH+ + KG +++PE+
Sbjct: 186 PYETILQKSSLARDLKSIFNSLSTSGIINIMIDKWIQVSFCLPQKVHQTHKKGFVVDPEI 245

Query: 336 IDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLV 395
           ID+C+ +L+PYHGLLLLTEPT L DSL  D S  L +LI+MY+PLKS+QTL+AD+ L L 
Sbjct: 246 IDRCLNSLRPYHGLLLLTEPTDLRDSLPTDHSPALCRLIQMYNPLKSLQTLAADSDLTLA 305

Query: 396 EISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISE 455
           ++  L G LVYW KA++I+PLC SNVYVV+ DA     + ++E F + FPG  LL  ISE
Sbjct: 306 QVFQLTGHLVYWAKATIIYPLCESNVYVVSPDAV--LTNRMLEAFSEQFPGMCLLQVISE 363

Query: 456 FSLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAPV-----------S 504
           FSLP S+  +++PLS P +Q ++ ++I+W+L++ LL+QLHTY+   P            +
Sbjct: 364 FSLPTSISQKLNPLSQPQQQTQLVKIIIWLLKNHLLLQLHTYVQYMPTVHGRSSVNIADA 423

Query: 505 PPADQKPKFKSLPDESDA---DSPPLNFQVPPVYIEGERNMWNKLLSLAANDKIESDILA 561
           P         +LP++  A   D    +  V P   +G  N     +SL   D    D+ +
Sbjct: 424 PNGLSSSPPDTLPEDESAVALDDGSWSLSVTP---KGTPNDSKADISLDKTD----DLYS 476

Query: 562 LESELLPVFRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKL 621
            +S+  P           +D+ L     + GYFKG HH+EE+MYLEN  R+Q+ Q+LDK 
Sbjct: 477 YQSDGYP----------SDDIILLERLCRMGYFKGGHHLEEIMYLENIRRSQLLQILDKF 526

Query: 622 R 622
           R
Sbjct: 527 R 527

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345498205|ref|XP_001606162.2| PREDICTED: nitrogen permease regulator 3-like protein-like isoform 1 [Nasonia vitripennis]

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/469 (46%), Positives = 305/469 (65%), Gaps = 34/469 (7%)

Query: 162 LTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNATLINIVFAL 221
           LT LSDE LSTLFAVK +L + KFELK+N+VRFVGHPTL+ S    + +++ L N+VFAL
Sbjct: 66  LTGLSDEVLSTLFAVKPELCECKFELKLNDVRFVGHPTLLPSRGPKEVNSSMLFNVVFAL 125

Query: 222 HAVARPSIVKCYYDLSKRLGKALKYEEERYNY------ALQAAHDIVLSSLEEGDRMSAS 275
            A A  S+VKCYYDLS+RLG AL++EE R  +       + + HD V +  EE      S
Sbjct: 126 QAQASHSVVKCYYDLSRRLGIALRHEERRCGFLTEEIKIMVSTHDEVAARSEEESDSDES 185

Query: 276 GYELIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPEL 335
            YE I+++S +A+++K +++ L TSG++ I I+K  Q+SFCLPQKVH+ + KG +++PE+
Sbjct: 186 PYETILQKSSLARDLKSIFNSLSTSGIINIMIDKWIQVSFCLPQKVHQTHKKGFVVDPEI 245

Query: 336 IDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLV 395
           ID+C+ +L+PYHGLLLLTEPT L DSL  D S  L +LI+MY+PLKS+QTL+AD+ L L 
Sbjct: 246 IDRCLNSLRPYHGLLLLTEPTDLRDSLPTDHSPALCRLIQMYNPLKSLQTLAADSDLTLA 305

Query: 396 EISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISE 455
           ++  L G LVYW KA++I+PLC SNVYVV+ DA     + ++E F + FPG  LL  ISE
Sbjct: 306 QVFQLTGHLVYWAKATIIYPLCESNVYVVSPDAV--LTNRMLEAFSEQFPGMCLLQVISE 363

Query: 456 FSLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAPVSPPADQKPKFKS 515
           FSLP S+  +++PLS P +Q ++ ++I+W+L++ LL+QLHTY+   P           +S
Sbjct: 364 FSLPTSISQKLNPLSQPQQQTQLVKIIIWLLKNHLLLQLHTYVQYMPTV-------HGRS 416

Query: 516 LPDESDA--DSPPLNFQVPPVYIEGERNMWNKLLSLAANDKIESDILALESELLPVFRKL 573
             DES    D    +  V P   +G  N     +SL   D    D+ + +S+  P     
Sbjct: 417 SVDESAVALDDGSWSLSVTP---KGTPNDSKADISLDKTD----DLYSYQSDGYP----- 464

Query: 574 PSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLR 622
                 +D+ L     + GYFKG HH+EE+MYLEN  R+Q+ Q+LDK R
Sbjct: 465 -----SDDIILLERLCRMGYFKGGHHLEEIMYLENIRRSQLLQILDKFR 508

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194870668|ref|XP_001972696.1| GG13742 [Drosophila erecta] gi|190654479|gb|EDV51722.1| GG13742 [Drosophila erecta]

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 218/521 (41%), Positives = 300/521 (57%), Gaps = 64/521 (12%)

Query: 162 LTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNAT-----LIN 216
           L   +DE LS LFAVK  L +QKFELK+N+VRFV HPTL+    K++ S A      LIN
Sbjct: 74  LQGFADEVLSALFAVKPQLCNQKFELKLNDVRFVSHPTLIPH--KEQRSGAMAKQQMLIN 131

Query: 217 IVFALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASG 276
           IVFALHA A  SIVKCY++LSKRLG ALK+EE+R  Y  +    +  +  E+  +     
Sbjct: 132 IVFALHAQASYSIVKCYHELSKRLGLALKFEEQRSGYLTEQTAQMARTHDEQQQQPLERT 191

Query: 277 YELIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELI 336
            ELI ++  +AQ ++ ++ +L T+GL+   +N N  L FCLP K H+L+ KG M++PE I
Sbjct: 192 LELIAERCSLAQALRSIFHDLCTTGLLSTSLNHNLTLCFCLPAKAHQLHKKGSMVDPETI 251

Query: 337 DKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVE 396
           D+C++ LKPYHG+LLL +   LLD + P  +  L +L+  Y+PL S+Q++S++  L +  
Sbjct: 252 DRCLRALKPYHGMLLLVDFAELLDCVPPTGARMLWQLVDAYNPLISLQSMSSNADLSIEH 311

Query: 397 ISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEF 456
           +  L+  LVYW KA++I+PLC +NVYV+A DA  HT S LVEKF   F G SL   IS+F
Sbjct: 312 VYKLVSHLVYWAKATIIYPLCETNVYVIAPDAPLHTKSHLVEKFSARFAGMSLFEVISDF 371

Query: 457 SLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYM-FLAPVSPPADQKPKFKS 515
           SLP S+ H  +PL  P  Q  ++QM++WMLQH LLMQLHTY+ F+       D       
Sbjct: 372 SLPTSIGHLTTPLQQPARQGILAQMVIWMLQHHLLMQLHTYVQFMPSEDEFGDSASCSNH 431

Query: 516 LPD---------ESDAD----------SPPLNFQVPPVYIEGERNMWNKLLSLAANDKIE 556
           L D         E DAD          S PL   VP V + G R   ++  S  A+D I 
Sbjct: 432 LRDAISDEEGEQEQDADELHGSMLSMSSHPL--PVPAVLVGGHRRDVSEDHSSLASDNIA 489

Query: 557 -------------------SDILALES--------ELLPVF--------RKLPSTVTQED 581
                               +  +L+S        ELL VF        R++P++   +D
Sbjct: 490 VQPSSSHKSNFSITASMSTDNCDSLDSMEDEQKLKELLQVFSDADRAAIRRIPASANVDD 549

Query: 582 LKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLR 622
           L L +  ++ GYFK  HH+EE+MY EN  R+Q+ QLLDK R
Sbjct: 550 LSLLVKLYQMGYFKSEHHLEEIMYFENLRRSQLLQLLDKFR 590

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24664016|ref|NP_648680.2| CG8783, isoform A [Drosophila melanogaster] gi|24664020|ref|NP_729945.1| CG8783, isoform B [Drosophila melanogaster] gi|442632218|ref|NP_001261818.1| CG8783, isoform C [Drosophila melanogaster] gi|18203553|sp|Q9VUB4.1|NPRL3_DROME RecName: Full=Nitrogen permease regulator 3-like protein gi|7294429|gb|AAF49774.1| CG8783, isoform A [Drosophila melanogaster] gi|23093515|gb|AAN11821.1| CG8783, isoform B [Drosophila melanogaster] gi|212287974|gb|ACJ23462.1| FI07656p [Drosophila melanogaster] gi|440215757|gb|AGB94511.1| CG8783, isoform C [Drosophila melanogaster]

 Score =  362 bits (928), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 216/519 (41%), Positives = 297/519 (57%), Gaps = 60/519 (11%)

Query: 162 LTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNA---TLINIV 218
           L   +DE LS LFAVK  L +QKFELK+N+VRFV HPTL+    +     A    LINIV
Sbjct: 74  LQGFADEVLSALFAVKPQLCNQKFELKLNDVRFVSHPTLIPQKEQRSGPMAKQQMLINIV 133

Query: 219 FALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYE 278
           FALHA A  SIVKCY++LSKRLG ALK+EE+R  Y  +    +  +  E+  +      E
Sbjct: 134 FALHAQASYSIVKCYHELSKRLGLALKFEEQRSGYLTEQTAQMARTHDEQQQQPLERTLE 193

Query: 279 LIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELIDK 338
           LI ++  +AQ ++ ++ +L T+GL+   +N N  L FCLP K H+L+ KG M++PE ID+
Sbjct: 194 LIAERCSLAQALRSIFHDLCTTGLLSTSLNHNLTLCFCLPAKAHQLHKKGSMVDPETIDR 253

Query: 339 CMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVEIS 398
           C++ LKPYHG+LLL +   LLD + P  +  L +L+ +Y PL S+Q++S++  L +  + 
Sbjct: 254 CLRALKPYHGMLLLVDFAELLDCVPPTGARMLWQLVDVYDPLISLQSMSSNADLSIEHVY 313

Query: 399 SLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEFSL 458
            L+  LVYW KA++I+PLC +NVYV+A DA  HT S LVEKF   F G SL   IS+FSL
Sbjct: 314 KLVSHLVYWAKATIIYPLCETNVYVIAPDAPLHTKSHLVEKFSARFAGMSLFEVISDFSL 373

Query: 459 PISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYM-FLAPVSPPADQKPKFKSLP 517
           P S+ H  +PL  P  Q  ++QM++WMLQH LLMQLHTY+ F+       D       L 
Sbjct: 374 PTSIGHLTTPLQQPARQGILAQMVIWMLQHHLLMQLHTYVQFMPSEDEFGDSASCSNHLR 433

Query: 518 D---------ESDAD----------SPPLNFQVPPVYIEGERNMWNKLLSLAANDKIE-- 556
           D         E DAD          S PL   VP V + G R   ++  S  A+D I   
Sbjct: 434 DAISDEEGDQEPDADELHGSMLSMSSHPL--PVPAVLVGGHRREASEDHSSLASDNIAVQ 491

Query: 557 -----------------SDILALES--------ELLPVF--------RKLPSTVTQEDLK 583
                             +  +L+S        ELL VF        R++P++   +DL 
Sbjct: 492 PSSSHKSNFSITASMSTDNCDSLDSMEDEQKLKELLQVFSDADRAAIRRIPASANVDDLS 551

Query: 584 LFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLR 622
           L +  ++ GYFK  HH+EE+MY EN  R+Q+ QLLDK R
Sbjct: 552 LLVKLYQMGYFKSEHHLEEIMYFENLRRSQLLQLLDKFR 590

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090272|ref|XP_970617.1| PREDICTED: similar to UPF0171 protein CG8783 [Tribolium castaneum] gi|270013442|gb|EFA09890.1| hypothetical protein TcasGA2_TC012039 [Tribolium castaneum]

 Score =  362 bits (928), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 223/531 (41%), Positives = 323/531 (60%), Gaps = 34/531 (6%)

Query: 126 LAESKLANAIRDKDYQEQKLKDFYIAPE--NSKVHTDCLTSLSDEALSTLFAVKADLVDQ 183
           L +++ AN  R   Y    L+D   +P    S ++   LT  +DE LS+LFAVK++L + 
Sbjct: 29  LEKNEPANTKRRNPYTLPNLEDLLQSPTQPTSNINKGHLTGFTDEVLSSLFAVKSELCNN 88

Query: 184 KFELKINEVRFVGHPTLVQSDIKDKD-SNATLINIVFALHAVARPSIVKCYYDLSKRLGK 242
           KFELK+N+VRFVGHPTL+Q   K +D S   LIN+VFAL A+A  S+V CY+DLSKR+G 
Sbjct: 89  KFELKVNDVRFVGHPTLLQLRNKQQDASGLMLINVVFALQALASHSVVTCYHDLSKRVGI 148

Query: 243 ALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGL 302
           AL+YEE+R  Y  +    +  +  +     S S +E I+ +  +A+NIKK+Y++L ++GL
Sbjct: 149 ALRYEEKRCGYVSEQTQTMTTAHDDGYTGNSESAFETILTKCTLAKNIKKLYEDLCSTGL 208

Query: 303 VYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSL 362
           V I+INK   LSFCLPQKVH+ + +G  +EP+ ID+C+K L+PYH LLLL    ++ D  
Sbjct: 209 VNIQINKWITLSFCLPQKVHQWHLRGKFVEPKDIDRCLKALRPYHSLLLLHPIQQMADFT 268

Query: 363 YPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVY 422
             D S  L +++K YSP+K++QTL+AD  L L  +  L   LVYW KA+VIFP+C +N Y
Sbjct: 269 GLDGSPSLERMLKQYSPIKNLQTLAADADLTLHHVFELTAHLVYWAKATVIFPICLTNKY 328

Query: 423 VVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEFSLPISLKHRISPLSYPHEQREISQMI 482
           V+A DA  H NS L++KF +AFP  +L+  IS+F+LP SL  + +PL +P +Q  + Q I
Sbjct: 329 VIAPDAPIHLNSPLIDKFSEAFPTANLIRVISDFALPTSLGQKCNPLCHPAQQSHLVQTI 388

Query: 483 VWMLQHRLLMQLHTYMFLAP----VSPPADQKPKFKS----------------LPDESDA 522
           +WMLQH LL+QLHTY+   P    ++ P ++  +  S                  + S A
Sbjct: 389 IWMLQHHLLLQLHTYVQYMPTDHGLAVPREKDERLVSQRNIGNVLSSSSYHPSTSEHSRA 448

Query: 523 DSPPLNFQVPPV-YIEGERNMWNKLLSL--AANDKIESDILALESELLPVFR-------- 571
           +S      V     +  E ++ N+ ++L   +   +E +    + ELL  F         
Sbjct: 449 ESESGTSTVSETPELRSESDLINRSINLENVSFTSVEDEKQDYQEELLLDFPDEERGNIF 508

Query: 572 KLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLR 622
           K+P+T   EDL+LF    ++GYF G HHIEE+MYLEN  R+Q+ QLLDK R
Sbjct: 509 KIPATNNPEDLRLFARLCRKGYFHGNHHIEEIMYLENLRRSQLLQLLDKFR 559

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195327480|ref|XP_002030446.1| GM24565 [Drosophila sechellia] gi|195590162|ref|XP_002084815.1| GD12638 [Drosophila simulans] gi|194119389|gb|EDW41432.1| GM24565 [Drosophila sechellia] gi|194196824|gb|EDX10400.1| GD12638 [Drosophila simulans]

 Score =  361 bits (927), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 216/519 (41%), Positives = 297/519 (57%), Gaps = 60/519 (11%)

Query: 162 LTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNA---TLINIV 218
           L   +DE LS LFAVK  L +QKFELK+N+VRFV HPTL+    +     A    LINIV
Sbjct: 74  LQGFADEVLSALFAVKPQLCNQKFELKLNDVRFVSHPTLIPHKEQRSGPMAKQQMLINIV 133

Query: 219 FALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYE 278
           FALHA A  SIVKCY++LSKRLG ALK+EE+R  Y  +    +  +  E+  +      E
Sbjct: 134 FALHAQASYSIVKCYHELSKRLGLALKFEEQRSGYLTEQTAQMARTHDEQQQQPLERTLE 193

Query: 279 LIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELIDK 338
           LI ++  +AQ ++ ++ +L T+GL+   +N N  L FCLP K H+L+ KG M++PE ID+
Sbjct: 194 LIAERCSLAQALRSIFHDLCTTGLLSTSLNHNLTLCFCLPAKAHQLHKKGSMVDPETIDR 253

Query: 339 CMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVEIS 398
           C++ LKPYHG+LLL +   LLD + P  +  L +L+ +Y PL S+Q++S++  L +  + 
Sbjct: 254 CLRALKPYHGMLLLVDFAELLDCVPPTGARMLWQLVDVYDPLISLQSMSSNADLSIEHVY 313

Query: 399 SLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEFSL 458
            L+  LVYW KA++I+PLC +NVYV+A DA  HT S LVEKF   F G SL   IS+FSL
Sbjct: 314 KLVSHLVYWAKATIIYPLCETNVYVIAPDAPLHTKSHLVEKFSARFAGMSLFEVISDFSL 373

Query: 459 PISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYM-FLAPVSPPADQKPKFKSLP 517
           P S+ H  +PL  P  Q  ++QM++WMLQH LLMQLHTY+ F+       D       L 
Sbjct: 374 PTSIGHLTTPLQQPARQGILAQMVIWMLQHHLLMQLHTYVQFMPSEDEFGDSASCSNHLR 433

Query: 518 D---------ESDAD----------SPPLNFQVPPVYIEGERNMWNKLLSLAANDKIE-- 556
           D         E DAD          S PL   VP V + G R   ++  S  A+D I   
Sbjct: 434 DAISDEEGDQEPDADELHGSMLSMSSHPL--PVPAVLVGGHRREVSEDHSSLASDNIAVQ 491

Query: 557 -----------------SDILALES--------ELLPVF--------RKLPSTVTQEDLK 583
                             +  +L+S        ELL VF        R++P++   +DL 
Sbjct: 492 PSSSHKSNFSITASMSTDNCDSLDSMEDEQKLKELLQVFSDADRAAIRRIPASANVDDLS 551

Query: 584 LFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLR 622
           L +  ++ GYFK  HH+EE+MY EN  R+Q+ QLLDK R
Sbjct: 552 LLVKLYQMGYFKSEHHLEEIMYFENLRRSQLLQLLDKFR 590

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157114810|ref|XP_001652433.1| hypothetical protein AaeL_AAEL001124 [Aedes aegypti] gi|108883586|gb|EAT47811.1| AAEL001124-PA [Aedes aegypti]

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 178/363 (49%), Positives = 255/363 (70%), Gaps = 13/363 (3%)

Query: 152 PENSKVHTDCLTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSN 211
           P  S +  D L  +SDE L+TLFAVK++L +QKFELK+N+VRFV HPTLV+ D  D+ S+
Sbjct: 59  PTVSNICFDQLYGISDEVLATLFAVKSELCNQKFELKVNDVRFVSHPTLVKLDGDDQKSS 118

Query: 212 ATL-INIVFALHAVARPSIVKCYYDLSKRLGKALKYEEERYNY------ALQAAHDIVLS 264
           +   IN+VFALHA A  S+VKCYY+LSKR+G AL YEE+R  Y       + +  D V +
Sbjct: 119 SYFRINVVFALHAQASYSVVKCYYELSKRIGVALLYEEKRAGYLSNEMKMMVSCMDEVAA 178

Query: 265 SLEEGDRMSASG-----YELIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQ 319
           + +E D  + SG     ++ I++   +AQ IK +Y +L T+GL+ + +N++  LSFCLPQ
Sbjct: 179 AAQEHDHGTTSGPCGNVFDTILRDCTLAQFIKTIYQDLSTTGLLNVTLNQSVTLSFCLPQ 238

Query: 320 KVHKLYCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSP 379
           K H+ + KG+++EPE ID+C+  LKPYHG+LLL +P+ LLD + P  +  L++LI+ Y+P
Sbjct: 239 KAHQFHKKGVVIEPETIDRCLHALKPYHGMLLLVDPSELLDCVPPSGARMLLQLIEAYNP 298

Query: 380 LKSIQTLSADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEK 439
           LKS+Q +++D  L +  +  L+G LVYW KA++I+PLC +NVYV+A DA  + +S+L EK
Sbjct: 299 LKSLQNMASDADLMIDHVYQLVGHLVYWAKATIIYPLCETNVYVIAPDAQLNIHSNLSEK 358

Query: 440 FMQAFPGHSLLHEISEFSLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYM- 498
           F   FPG SL   IS+FSLP S+ H  +PL +P  Q  ++QM++WMLQH LLMQLHTY+ 
Sbjct: 359 FSTKFPGMSLFEVISDFSLPTSIGHLTTPLQHPARQGRLAQMVLWMLQHHLLMQLHTYVQ 418

Query: 499 FLA 501
           F+A
Sbjct: 419 FIA 421

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16769370|gb|AAL28904.1| LD28428p [Drosophila melanogaster]

 Score =  359 bits (922), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 215/518 (41%), Positives = 296/518 (57%), Gaps = 60/518 (11%)

Query: 162 LTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNA---TLINIV 218
           L   +DE LS LFAVK  L +QKFELK+N+VRFV HPTL+    +     A    LINIV
Sbjct: 74  LQGFADEVLSALFAVKPQLCNQKFELKLNDVRFVSHPTLIPQKEQRSGPMAKQQMLINIV 133

Query: 219 FALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYE 278
           FALHA A  SIVKCY++LSKRLG ALK+EE+R  Y  +    +  +  E+  +      E
Sbjct: 134 FALHAQASYSIVKCYHELSKRLGLALKFEEQRSGYLTEQTAQMARTHDEQQQQPLERTLE 193

Query: 279 LIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELIDK 338
           LI ++  +AQ ++ ++ +L T+GL+   +N N  L FCLP K H+L+ KG M++PE ID+
Sbjct: 194 LIAERCSLAQALRSIFHDLCTTGLLSTSLNHNLTLCFCLPAKAHQLHKKGSMVDPETIDR 253

Query: 339 CMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVEIS 398
           C++ LKPYHG+LLL +   LLD + P  +  L +L+ +Y PL S+Q++S++  L +  + 
Sbjct: 254 CLRALKPYHGMLLLVDFAELLDCVPPTGARMLWQLVDVYDPLISLQSMSSNADLSIEHVY 313

Query: 399 SLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEFSL 458
            L+  LVYW KA++I+PLC +NVYV+A DA  HT S LVEKF   F G SL   IS+FSL
Sbjct: 314 KLVSHLVYWAKATIIYPLCETNVYVIAPDAPLHTKSHLVEKFSARFAGMSLFEVISDFSL 373

Query: 459 PISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYM-FLAPVSPPADQKPKFKSLP 517
           P S+ H  +PL  P  Q  ++QM++WMLQH LLMQLHTY+ F+       D       L 
Sbjct: 374 PTSIGHLTTPLQQPARQGILAQMVIWMLQHHLLMQLHTYVQFMPSEDEFGDSASCSNHLR 433

Query: 518 D---------ESDAD----------SPPLNFQVPPVYIEGERNMWNKLLSLAANDKIE-- 556
           D         E DAD          S PL   VP V + G R   ++  S  A+D I   
Sbjct: 434 DAISDEEGDQEPDADELHGSMLSMSSHPL--PVPAVLVGGHRREASEDHSSLASDNIAVQ 491

Query: 557 -----------------SDILALES--------ELLPVF--------RKLPSTVTQEDLK 583
                             +  +L+S        ELL VF        R++P++   +DL 
Sbjct: 492 PSSSHKSNFSITASMSTDNCDSLDSMEDEQKLKELLQVFSDADRAAIRRIPASANVDDLS 551

Query: 584 LFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKL 621
           L +  ++ GYFK  HH+EE+MY EN  R+Q+ QLLDK 
Sbjct: 552 LLVKLYQMGYFKSEHHLEEIMYFENLRRSQLLQLLDKF 589

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195494235|ref|XP_002094750.1| GE20037 [Drosophila yakuba] gi|194180851|gb|EDW94462.1| GE20037 [Drosophila yakuba]

 Score =  358 bits (920), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 215/519 (41%), Positives = 295/519 (56%), Gaps = 60/519 (11%)

Query: 162 LTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNA---TLINIV 218
           L   +DE LS LFAVK  L +QKFELK+N+VRFV HPTL+    +     A    LINIV
Sbjct: 74  LQGFADEVLSALFAVKPQLCNQKFELKLNDVRFVSHPTLIPHKEQRSGPMAKQQMLINIV 133

Query: 219 FALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYE 278
           FALHA A  SIVKCY++LSKRLG ALK+EE+R  Y  +    +  +  E+  +      E
Sbjct: 134 FALHAQASYSIVKCYHELSKRLGLALKFEEQRSGYLTEQTAQMARTHDEQQQQPLERTLE 193

Query: 279 LIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELIDK 338
           LI ++  +AQ ++ ++ +L T+GL+   +N N  L FCLP K H+L+ KG M++PE ID+
Sbjct: 194 LIAERCSLAQALRSIFHDLCTTGLLSTSLNHNLTLCFCLPAKAHQLHKKGSMVDPETIDR 253

Query: 339 CMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVEIS 398
           C++ LKPYHG+LLL +   LLD + P  +  L +L+  Y PL S+Q++S++  L +  + 
Sbjct: 254 CLRALKPYHGMLLLVDFAELLDCVPPTGARMLWQLVDAYDPLISLQSMSSNADLSIEHVY 313

Query: 399 SLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEFSL 458
            L+  LVYW KA++I+PLC +NVYV+A DA  HT S LVEKF   F G SL   IS+FSL
Sbjct: 314 KLVSHLVYWAKATIIYPLCETNVYVIAPDAPLHTKSHLVEKFSARFAGMSLFEVISDFSL 373

Query: 459 PISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYM-FLAPVSPPADQKPKFKSLP 517
           P S+ H  +PL  P  Q  ++QM++WMLQH LLMQLHTY+ F+       D       L 
Sbjct: 374 PTSIGHLTTPLQQPARQGILAQMVIWMLQHHLLMQLHTYVQFMPSEDEFGDSASCSNHLR 433

Query: 518 D---------ESDAD----------SPPLNFQVPPVYIEGERNMWNKLLSLAANDKIE-- 556
           D         E D D          S PL   VP V + G R   ++  S  A+D I   
Sbjct: 434 DAISDEEGEQEQDVDELHGSMLSMSSHPL--PVPAVLVGGHRRDVSEDHSSLASDNIAVQ 491

Query: 557 -----------------SDILALES--------ELLPVF--------RKLPSTVTQEDLK 583
                             +  +L+S        ELL VF        R++P++   +DL 
Sbjct: 492 PSSSHKSNFSITASMSTDNCDSLDSMEDEQKLKELLQVFSDADRAAIRRIPASANVDDLS 551

Query: 584 LFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLR 622
           L +  ++ GYFK  HH+EE+MY EN  R+Q+ QLLDK R
Sbjct: 552 LLVKLYQMGYFKSEHHLEEIMYFENLRRSQLLQLLDKFR 590

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	860
FB|FBgn0036397	610	CG8783 [Drosophila melanogaste	0.461	0.650	0.418	2.3e-93
FB|FBgn0263979	430	Caf1 "Chromatin assembly facto	0.234	0.469	0.728	1.2e-81
UNIPROTKB|Q6INH0	425	rbbp4-b "Histone-binding prote	0.232	0.470	0.735	2.9e-80
UNIPROTKB|O93377	425	rbbp4-a "Histone-binding prote	0.232	0.470	0.735	2.9e-80
UNIPROTKB|Q5M7K4	425	rbbp4 "Histone-binding protein	0.232	0.470	0.735	2.9e-80
UNIPROTKB|Q9W7I5	425	RBBP4 "Histone-binding protein	0.232	0.470	0.735	2.9e-80
UNIPROTKB|F2Z4M0	425	RBBP4 "Histone-binding protein	0.232	0.470	0.735	2.9e-80
UNIPROTKB|Q3MHL3	425	RBBP4 "Histone-binding protein	0.232	0.470	0.735	2.9e-80
UNIPROTKB|E2QXR8	425	RBBP4 "Uncharacterized protein	0.232	0.470	0.735	2.9e-80
UNIPROTKB|Q09028	425	RBBP4 "Histone-binding protein	0.232	0.470	0.735	2.9e-80

FB|FBgn0036397 CG8783 [Drosophila melanogaster (taxid:7227)]

 Score = 796 (285.3 bits), Expect = 2.3e-93, Sum P(2) = 2.3e-93
 Identities = 170/406 (41%), Positives = 239/406 (58%)

Query:   102 DIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKDFYIAPEN--SKVHT 159
             D K  ++L R   + +G+  V  D  E + +   +   Y      D    P +  +    
Sbjct:    16 DSKGDRLLYRYPYQTLGQTEVAND--EQRKSR--KRNPYAVANTDDLLQTPTHLGAAKSQ 71

Query:   160 DCLTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLV-QSDIKDKD--SNATLIN 216
               L   +DE LS LFAVK  L +QKFELK+N+VRFV HPTL+ Q + +         LIN
Sbjct:    72 GQLQGFADEVLSALFAVKPQLCNQKFELKLNDVRFVSHPTLIPQKEQRSGPMAKQQMLIN 131

Query:   217 IVFALHAVARPSIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASG 276
             IVFALHA A  SIVKCY++LSKRLG ALK+EE+R  Y  +    +  +  E+  +     
Sbjct:   132 IVFALHAQASYSIVKCYHELSKRLGLALKFEEQRSGYLTEQTAQMARTHDEQQQQPLERT 191

Query:   277 YELIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGIMMEPELI 336
              ELI ++  +AQ ++ ++ +L T+GL+   +N N  L FCLP K H+L+ KG M++PE I
Sbjct:   192 LELIAERCSLAQALRSIFHDLCTTGLLSTSLNHNLTLCFCLPAKAHQLHKKGSMVDPETI 251

Query:   337 DKCMKNLKPYHGXXXXXXXXXXXXXXYPDSSTPLIKLIKMYSPLKSIQTLSADTSLPLVE 396
             D+C++ LKPYHG               P  +  L +L+ +Y PL S+Q++S++  L +  
Sbjct:   252 DRCLRALKPYHGMLLLVDFAELLDCVPPTGARMLWQLVDVYDPLISLQSMSSNADLSIEH 311

Query:   397 ISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGHSLLHEISEF 456
             +  L+  LVYW KA++I+PLC +NVYV+A DA  HT S LVEKF   F G SL   IS+F
Sbjct:   312 VYKLVSHLVYWAKATIIYPLCETNVYVIAPDAPLHTKSHLVEKFSARFAGMSLFEVISDF 371

Query:   457 SLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAP 502
             SLP S+ H  +PL  P  Q  ++QM++WMLQH LLMQLHTY+   P
Sbjct:   372 SLPTSIGHLTTPLQQPARQGILAQMVIWMLQHHLLMQLHTYVQFMP 417

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0263979 Caf1 "Chromatin assembly factor 1 subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 161/221 (72%), Positives = 176/221 (79%)

Query:   639 SVADDQKLMIWDT----RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFX 694
             S +DD  + +WD     + H V    +    HTA V  ++++   E +  +  AD     
Sbjct:   199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS-VAD----- 252

Query:   695 XXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
                      DQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILATGSADKTVA
Sbjct:   253 ---------DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303

Query:   755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
             LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA
Sbjct:   304 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363

Query:   815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
             EDGPPELLFIHGGHTAKISDFSWNPNEPW+ICSVSEDNIMQ
Sbjct:   364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404

GO:0016584 "nucleosome positioning" evidence=IDA

GO:0042826 "histone deacetylase binding" evidence=ISS;IDA

GO:0031497 "chromatin assembly" evidence=ISS;IDA

GO:0033186 "CAF-1 complex" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0042393 "histone binding" evidence=IDA;NAS;TAS

GO:0016590 "ACF complex" evidence=IDA

GO:0006281 "DNA repair" evidence=TAS

GO:0006334 "nucleosome assembly" evidence=NAS;IDA

GO:0016573 "histone acetylation" evidence=ISS;IDA

GO:0016589 "NURF complex" evidence=NAS;TAS;IPI

GO:0035035 "histone acetyltransferase binding" evidence=ISS;IPI

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042766 "nucleosome mobilization" evidence=IDA

GO:0006335 "DNA replication-dependent nucleosome assembly" evidence=NAS

GO:0003682 "chromatin binding" evidence=NAS

GO:0006342 "chromatin silencing" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=IDA

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

GO:0046976 "histone methyltransferase activity (H3-K27 specific)" evidence=IC

GO:0046974 "histone methyltransferase activity (H3-K9 specific)" evidence=IC

GO:0016571 "histone methylation" evidence=IDA

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0007307 "eggshell chorion gene amplification" evidence=IC

GO:0031523 "Myb complex" evidence=IDA

GO:0005667 "transcription factor complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0016581 "NuRD complex" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0000910 "cytokinesis" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0031491 "nucleosome binding" evidence=IDA

GO:0042054 "histone methyltransferase activity" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0007517 "muscle organ development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0070822 "Sin3-type complex" evidence=IDA

GO:0007379 "segment specification" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0061085 "regulation of histone H3-K27 methylation" evidence=IMP

UNIPROTKB|Q6INH0 rbbp4-b "Histone-binding protein RBBP4-B" [Xenopus laevis (taxid:8355)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 164/223 (73%), Positives = 177/223 (79%)

Query:   639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
             S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct:   195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248

Query:   693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                        DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct:   249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297

Query:   753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
             VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct:   298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357

Query:   813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
             DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct:   358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

GO:0005634 "nucleus" evidence=ISS

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

UNIPROTKB|O93377 rbbp4-a "Histone-binding protein RBBP4-A" [Xenopus laevis (taxid:8355)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 164/223 (73%), Positives = 177/223 (79%)

Query:   639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
             S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct:   195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248

Query:   693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                        DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct:   249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297

Query:   753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
             VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct:   298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357

Query:   813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
             DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct:   358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|Q5M7K4 rbbp4 "Histone-binding protein RBBP4" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 164/223 (73%), Positives = 177/223 (79%)

Query:   639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
             S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct:   195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248

Query:   693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                        DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct:   249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297

Query:   753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
             VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct:   298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357

Query:   813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
             DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct:   358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|Q9W7I5 RBBP4 "Histone-binding protein RBBP4" [Gallus gallus (taxid:9031)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 164/223 (73%), Positives = 177/223 (79%)

Query:   639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
             S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct:   195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248

Query:   693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                        DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct:   249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297

Query:   753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
             VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct:   298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357

Query:   813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
             DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct:   358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0031497 "chromatin assembly" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

UNIPROTKB|F2Z4M0 RBBP4 "Histone-binding protein RBBP4" [Gallus gallus (taxid:9031)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 164/223 (73%), Positives = 177/223 (79%)

Query:   639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
             S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct:   195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248

Query:   693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                        DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct:   249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297

Query:   753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
             VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct:   298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357

Query:   813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
             DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct:   358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

UNIPROTKB|Q3MHL3 RBBP4 "Histone-binding protein RBBP4" [Bos taurus (taxid:9913)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 164/223 (73%), Positives = 177/223 (79%)

Query:   639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
             S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct:   195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248

Query:   693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                        DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct:   249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297

Query:   753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
             VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct:   298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357

Query:   813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
             DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct:   358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2QXR8 RBBP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 164/223 (73%), Positives = 177/223 (79%)

Query:   639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
             S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct:   195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248

Query:   693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                        DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct:   249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297

Query:   753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
             VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct:   298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357

Query:   813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
             DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct:   358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

UNIPROTKB|Q09028 RBBP4 "Histone-binding protein RBBP4" [Homo sapiens (taxid:9606)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 164/223 (73%), Positives = 177/223 (79%)

Query:   639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
             S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct:   195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248

Query:   693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                        DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct:   249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297

Query:   753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
             VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct:   298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357

Query:   813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
             DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct:   358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016581 "NuRD complex" evidence=NAS;IDA

GO:0016589 "NURF complex" evidence=IDA

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0033186 "CAF-1 complex" evidence=IDA

GO:0031497 "chromatin assembly" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0008094 "DNA-dependent ATPase activity" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006334 "nucleosome assembly" evidence=TAS

GO:0034080 "CENP-A containing nucleosome assembly at centromere" evidence=TAS

GO:0016580 "Sin3 complex" evidence=NAS

GO:0042393 "histone binding" evidence=NAS

GO:0042826 "histone deacetylase binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q09028	RBBP4_HUMAN	No assigned EC number	0.7354	0.2325	0.4705	yes	N/A
Q9W7I5	RBBP4_CHICK	No assigned EC number	0.7354	0.2325	0.4705	yes	N/A
O22467	MSI1_ARATH	No assigned EC number	0.5043	0.2488	0.5047	yes	N/A
Q5M7K4	RBBP4_XENTR	No assigned EC number	0.7354	0.2325	0.4705	yes	N/A
Q3MHL3	RBBP4_BOVIN	No assigned EC number	0.7354	0.2325	0.4705	yes	N/A
Q54SD4	RBBD_DICDI	No assigned EC number	0.5446	0.2441	0.4964	yes	N/A
Q5RF92	RBBP4_PONAB	No assigned EC number	0.7354	0.2325	0.4705	yes	N/A
Q6P3H7	RBBP4_DANRE	No assigned EC number	0.7063	0.2465	0.5	yes	N/A
P90916	LIN53_CAEEL	No assigned EC number	0.6223	0.2453	0.5059	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	860
pfam03666	424	pfam03666, NPR3, Nitrogen Permease regulator of am	2e-64
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-25
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-25
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-24
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-15
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-08
smart00320	40	smart00320, WD40, WD40 repeats	1e-07
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	5e-07
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	5e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	7e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-04

>gnl|CDD|217667 pfam03666, NPR3, Nitrogen Permease regulator of amino acid transport activity 3

 Score =  222 bits (567), Expect = 2e-64
 Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 37/333 (11%)

Query: 198 PTLVQSDIKDKDSNATLINIVFALH---AVARPSIVKCYYDLSKRLGKALKYEEERYNY- 253
                   +D  S+ T+ N+VF L+         + + Y+ + K+L  ALKYE+++ +Y 
Sbjct: 90  DPASDPSSEDSKSSMTMFNVVFILNPPLIEYNYRVDEMYHHVIKKLSLALKYEQQKSDYV 149

Query: 254 -----ALQAAHDIVLSSLEEGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIKIN 308
                 + A  + V    ++ + +    YE I+ +S +A+ +K  Y+ + TSG+  ++IN
Sbjct: 150 WKECKKILALKEKVREQSQKLESL----YEEILSKSSLARALKDCYESISTSGIANLEIN 205

Query: 309 KNHQLSFCLPQKVHKLYCKGIMMEPELIDKCMKN----------------LKPYHGLLLL 352
            +  +S  +P K        + ++P L    + +                LKPY  LLLL
Sbjct: 206 NDKTVSLQIPIKTEFHSLPQLTVDPVLPGSWLTSANSLSADENVRSDEDILKPYFALLLL 265

Query: 353 TEPTRLLDSLYPDSSTP---LIKLIKMYSPLKSIQTLSADTSLPLVEISSLIGSLVYWGK 409
            +  +++  L    S+P   L K I+   P KS+  L+  + LPL ++ SL   L+YW +
Sbjct: 266 DDEKKIIKDLPTADSSPALALAKFIRHIKPTKSLLQLAQSSGLPLSQVFSLALHLIYWRR 325

Query: 410 ASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGH-SLLHEISEFS-LPISLKHRIS 467
           A  I+PL + NVY+V+ +A      SL E F   FP   SL   ++  S  P      I 
Sbjct: 326 ARAIYPLSSRNVYIVSPNAPLSKLYSLAEAFKAQFPTLPSLPSFLALLSGKPRPFATFIP 385

Query: 468 PLSYPHEQREISQMIVWMLQHRLLMQLHTYMFL 500
                  +    +M+ W+L+H  + QLHT+++L
Sbjct: 386 S---KDHRPIYLEMLAWLLRHGYVTQLHTFVYL 415

This family, also known in yeasts as Rmd11, complexes with NPR2, pfam06218. This complex heterodimer is responsible for inactivating TORC1. an evolutionarily conserved protein complex that controls cell size via nutritional input signals, specifically, in response to amino acid starvation. Length = 424

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  119 bits (301), Expect = 8e-30
 Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 40/213 (18%)

Query: 642 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE 701
            D+ + +WD  +    K   T+  HT  VN ++F+P   ++ A+ S D T          
Sbjct: 113 RDKTIKVWDVET---GKCLTTLRGHTDWVNSVAFSPDGTFV-ASSSQDGT---------- 158

Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 761
                + +WD R+    K   T+  HT EVN ++F+P     L + S+D T+ LWDL   
Sbjct: 159 -----IKLWDLRT---GKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTG 209

Query: 762 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 821
           K  L +   H++ +  V +SP    +LAS   D  + VWDL                 E 
Sbjct: 210 KC-LGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRT--------------GEC 253

Query: 822 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
           +    GHT  ++  +W+P+   +  S S D  +
Sbjct: 254 VQTLSGHTNSVTSLAWSPDGKRL-ASGSADGTI 285

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  106 bits (266), Expect = 4e-25
 Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 40/228 (17%)

Query: 627 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 686
           VA+      L  + + D  + +WD  +    +   T+  HT  V  ++ +    Y LA+G
Sbjct: 15  VAFSP-DGKLLATGSGDGTIKVWDLET---GELLRTLKGHTGPVRDVAASADGTY-LASG 69

Query: 687 SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 746
           S+DKT               + +WD  +    +   T+  HT+ V+ ++F+P    IL++
Sbjct: 70  SSDKT---------------IRLWDLET---GECVRTLTGHTSYVSSVAFSP-DGRILSS 110

Query: 747 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 806
            S DKT+ +WD+   K    +   H D +  V +SP   T +ASS  D  + +WDL    
Sbjct: 111 SSRDKTIKVWDVETGKCL-TTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGK 168

Query: 807 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
              +                GHT +++  +++P+   ++ S S+  I 
Sbjct: 169 CVAT--------------LTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  105 bits (263), Expect = 7e-25
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 37/196 (18%)

Query: 659 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVS 718
              T+  HT  V C++F+P  +  LATGS D T               + +WD  +    
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKL-LATGSGDGT---------------IKVWDLET---G 41

Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 778
           +   T+  HT  V  ++ +    Y LA+GS+DKT+ LWDL   +  + +   H   +  V
Sbjct: 42  ELLRTLKGHTGPVRDVAASADGTY-LASGSSDKTIRLWDLETGEC-VRTLTGHTSYVSSV 99

Query: 779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 838
            +SP    IL+SS  D+ + VWD+       +                GHT  ++  +++
Sbjct: 100 AFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLR--------------GHTDWVNSVAFS 144

Query: 839 PNEPWVICSVSEDNIM 854
           P+    + S S+D  +
Sbjct: 145 PD-GTFVASSSQDGTI 159

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  102 bits (255), Expect = 9e-24
 Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 28/177 (15%)

Query: 626 DVAWHLLHESLFGSVA-DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 684
            VA+    +  F + +  D  + +WD R+    K   T+  HT EVN ++F+P     L 
Sbjct: 140 SVAFS--PDGTFVASSSQDGTIKLWDLRT---GKCVATLTGHTGEVNSVAFSP-DGEKLL 193

Query: 685 TGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL 744
           + S+D T               + +WD  +    K   T+  H   VN ++F+P   Y+L
Sbjct: 194 SSSSDGT---------------IKLWDLST---GKCLGTLRGHENGVNSVAFSP-DGYLL 234

Query: 745 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
           A+GS D T+ +WDLR  +  + +   H + +  + WSP +   LAS   D  + +WD
Sbjct: 235 ASGSEDGTIRVWDLRTGEC-VQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 99.4 bits (246), Expect = 8e-22
 Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 35/230 (15%)

Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
            +A+    + L    + D  + +WD R+    KP  T+  HT  V+ L+F+P    ++A+
Sbjct: 160 SLAFSPDGKLLASGSSLDGTIKLWDLRT---GKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216

Query: 686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
           GS+D T               + +WD  +  + +   T+  H+  V   SF+P     LA
Sbjct: 217 GSSDGT---------------IRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDGSL-LA 257

Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 805
           +GS+D T+ LWDLR+    L +   H   +  V +SP +  +LAS  +D  + +WDL   
Sbjct: 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLET- 315

Query: 806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
                      G         GH   +S  S++P+   ++   S+D  ++
Sbjct: 316 -----------GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 92.5 bits (228), Expect = 1e-19
 Identities = 70/336 (20%), Positives = 128/336 (38%), Gaps = 40/336 (11%)

Query: 517 PDESDADSPPLNFQVPPVYIEGERNMWNKLLSLAANDKIESDILALESELLPVFRKLPST 576
                     L   +  + +    +  + +L LA        +  L S LL       ++
Sbjct: 11  NKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITS 70

Query: 577 VTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESL 636
           +        L         GT  + ++   E   ++        +  L   +    +  L
Sbjct: 71  IAFSPDGELLLSGS---SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS-PDGNSIL 126

Query: 637 FGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE 696
             S + D  + +WD       K   T++ H+  V  L+F+P  + + +  S D T     
Sbjct: 127 LASSSLDGTVKLWDLS--TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT----- 179

Query: 697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW 756
                     + +WD R+    KP  T+  HT  V+ L+F+P    ++A+GS+D T+ LW
Sbjct: 180 ----------IKLWDLRT---GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226

Query: 757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 816
           DL   KL   +   H D +    +SP + ++LAS  +D  + +WDL              
Sbjct: 227 DLSTGKLLRSTLSGHSDSVVSS-FSP-DGSLLASGSSDGTIRLWDLRSSS---------- 274

Query: 817 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
               LL    GH++ +   +++P+   +  S S D 
Sbjct: 275 ---SLLRTLSGHSSSVLSVAFSPDGKLLA-SGSSDG 306

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 82.1 bits (201), Expect = 3e-16
 Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 33/208 (15%)

Query: 650 DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMI 709
           D+        S  +  H   +  ++F+P  E +L+  S                D  + +
Sbjct: 48  DSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSS----------------DGTIKL 91

Query: 710 WDTRSHNVSKPSHTVDAHTAEVNCLSFNP--YSEYILATGSADKTVALWDLRNLKLKLHS 767
           WD  +      S     H + V+ L+ +    +  +LA+ S D TV LWDL      + +
Sbjct: 92  WDLDNGEKLIKSLEGL-HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150

Query: 768 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 827
            E H + +  + +SP  + + + S  D  + +WDL                 + L    G
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--------------GKPLSTLAG 196

Query: 828 HTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           HT  +S  +++P+   +I S S D  ++
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIR 224

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 27/224 (12%)

Query: 635 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE 694
           SL  S + D  + +WD RS   S    T+  H++ V  ++F+P  +  LA+GS+D T   
Sbjct: 254 SLLASGSSDGTIRLWDLRSS--SSLLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGT--- 307

Query: 695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
                       + +WD  +  +   S T+  H   V+ LSF+P    +++ GS D T+ 
Sbjct: 308 ------------VRLWDLETGKLLS-SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354

Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
           LWDLR  K            +  V +SP +  +++S  TD  + +WDLS     ++ +  
Sbjct: 355 LWDLRTGKPLK--TLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411

Query: 815 EDGPPELLFIHGGH-----TAKISDFSWNPNEPWVICSVSEDNI 853
                 L F   G      ++  +   W+        S S D  
Sbjct: 412 TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGK 455

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 57.7 bits (139), Expect = 2e-08
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 9/91 (9%)

Query: 720 PSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTVALWDLRN-------LKLKLHSFESH 771
           P   +  HT+ +  L FNP +SE ILA+GS D T+ +W++ +       +K      + H
Sbjct: 66  PVIKLKGHTSSILDLQFNPCFSE-ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124

Query: 772 KDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
           K +I  + W+P N  I+ SSG D  +++WD+
Sbjct: 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 757
           K   T+  HT  V  ++F+P     LA+GS D TV +WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNL-LASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD 757
           +   T+  HT  V  ++F+P  +Y LA+GS D T+ LWD
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKY-LASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 53.0 bits (127), Expect = 5e-07
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 24/111 (21%)

Query: 659 PSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHN- 716
           P   +  HT+ +  L FNP +SE ILA+GS D T               + +W+   HN 
Sbjct: 66  PVIKLKGHTSSILDLQFNPCFSE-ILASGSEDLT---------------IRVWEIP-HND 108

Query: 717 -----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK 762
                +  P   +  H  +++ + +NP + YI+ +   D  V +WD+ N K
Sbjct: 109 ESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159

Length = 568

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 49.5 bits (118), Expect = 5e-06
 Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 28/198 (14%)

Query: 624 LIDVAWHLLHESLFGSVADDQKLMIWDTR----SHNVSKPSHTVDAHTAEVNCLSFNPYS 679
           +IDVA++        + ++D  +M W       + N+S P   +  HT +V  +SF+P +
Sbjct: 78  IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137

Query: 680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY 739
             +LA+  AD                 + +WD       K    +  H+ ++  L +N  
Sbjct: 138 MNVLASAGADMV---------------VNVWDV---ERGKAVEVIKCHSDQITSLEWN-L 178

Query: 740 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ-VQWSPHNETILA---SSGTDR 795
              +L T S DK + + D R+  + + S E+H     Q   W+   + I+    S    R
Sbjct: 179 DGSLLCTTSKDKKLNIIDPRDGTI-VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQR 237

Query: 796 RLHVWDLSKIGEEQSTED 813
           ++ +WD  K+    ST D
Sbjct: 238 QIMLWDTRKMASPYSTVD 255

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 764 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
            L + + H   +  V +SP +  +LAS   D  + VWD
Sbjct: 3   LLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 765 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
           L + + H   +  V +SP     LAS   D  + +WD
Sbjct: 5   LKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 48.2 bits (114), Expect = 2e-05
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 26/181 (14%)

Query: 624 LIDVAWHLLHESLFGSVADDQKLMIWD-TRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI 682
           L  + W+   +S   S   +  + +WD  RS  V++    +  H   V  + ++     +
Sbjct: 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE----MKEHEKRVWSIDYSSADPTL 590

Query: 683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY 742
           LA+GS D +       +  + +Q + I   ++              A + C+ F   S  
Sbjct: 591 LASGSDDGSV------KLWSINQGVSIGTIKT-------------KANICCVQFPSESGR 631

Query: 743 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
            LA GSAD  V  +DLRN KL L +   H   +  V++   + + L SS TD  L +WDL
Sbjct: 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDL 689

Query: 803 S 803
           S
Sbjct: 690 S 690

Length = 793

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 46.1 bits (109), Expect = 7e-05
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 761 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 820
           +KLK      H   I  +Q++P    ILAS   D  + VW++     ++S ++ +D    
Sbjct: 68  IKLK-----GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPH--NDESVKEIKDP--- 117

Query: 821 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
              I  GH  KIS   WNP   +++CS   D+
Sbjct: 118 -QCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.4 bits (95), Expect = 7e-05
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 658 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 691
           K   T+  HT  V  ++F+P     LA+GS D T
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNL-LASGSDDGT 34

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 24/141 (17%)

Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
            +++      L    +DD  + +WD R+    KP  T++ H+  V  +SF+P    ++++
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRT---GKPLKTLEGHS-NVLSVSFSP-DGRVVSS 387

Query: 686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
           GS D T               + +WD  +         +D HT+ V  L F+P  + + A
Sbjct: 388 GSTDGT---------------VRLWDLST---GSLLRNLDGHTSRVTSLDFSPDGKSL-A 428

Query: 746 TGSADKTVALWDLRNLKLKLH 766
           +GS+D T+ LWDL+     + 
Sbjct: 429 SGSSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 658 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 691
           +   T+  HT  V  ++F+P  +Y LA+GS D T
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKY-LASGSDDGT 35

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 44.6 bits (105), Expect = 2e-04
 Identities = 41/197 (20%), Positives = 86/197 (43%), Gaps = 41/197 (20%)

Query: 603 VMYLENKTR-AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN------ 655
            + LEN+ R   + +L      ++D+ ++     +  S ++D  + +W+   HN      
Sbjct: 55  AIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIP-HNDESVKE 113

Query: 656 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ--FEVEEEE---EENYDQKL--M 708
           +  P   +  H  +++ + +NP + YI+ +   D     +++E E+   + N  +KL  +
Sbjct: 114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSL 173

Query: 709 IWDTRSHNVS-----KPSHTVDAHTAEVNCLSFNPYS-----------------EYILAT 746
            W+ + + +S     K  H +D    E+   SF+ +                   YIL+T
Sbjct: 174 KWNIKGNLLSGTCVGKHMHIIDPRKQEI-ASSFHIHDGGKNTKNIWIDGLGGDDNYILST 232

Query: 747 GSAD---KTVALWDLRN 760
           G +    + + LWDL+N
Sbjct: 233 GFSKNNMREMKLWDLKN 249

Length = 568

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	860
KOG3830|consensus	542		100.0
PF03666	452	NPR3: Nitrogen Permease regulator of amino acid tr	100.0
PF06218	428	NPR2: Nitrogen permease regulator 2; InterPro: IPR	100.0
KOG3789|consensus	396		100.0
KOG0272|consensus	459		99.97
KOG0263|consensus	707		99.96
KOG0271|consensus	480		99.96
KOG0272|consensus	459		99.96
KOG0264|consensus	422		99.95
KOG0271|consensus	480		99.95
KOG0284|consensus	464		99.94
KOG0273|consensus	524		99.94
KOG0273|consensus	524		99.93
KOG0286|consensus	343		99.93
KOG0277|consensus	311		99.92
KOG0645|consensus	312		99.92
KOG0286|consensus	343		99.92
KOG0291|consensus	893		99.92
KOG0279|consensus	315		99.92
KOG0305|consensus	484		99.92
KOG0284|consensus	464		99.92
KOG0279|consensus	315		99.92
KOG0277|consensus	311		99.91
KOG0645|consensus	312		99.91
KOG0285|consensus	460		99.91
KOG0295|consensus	406		99.9
KOG0319|consensus	775		99.9
KOG0263|consensus	707		99.9
PTZ00421	493	coronin; Provisional	99.9
KOG0276|consensus	794		99.9
KOG0315|consensus	311		99.9
KOG0265|consensus	338		99.9
PTZ00420	568	coronin; Provisional	99.89
KOG0295|consensus	406		99.89
KOG0266|consensus	456		99.89
KOG0265|consensus	338		99.88
KOG0282|consensus	503		99.88
KOG0276|consensus	794		99.88
KOG0264|consensus	422		99.88
KOG0269|consensus	839		99.88
KOG0266|consensus	456		99.88
KOG0315|consensus	311		99.87
KOG0281|consensus	499		99.87
KOG0643|consensus	327		99.87
KOG0292|consensus	1202		99.87
KOG0310|consensus	487		99.87
KOG0313|consensus	423		99.87
KOG0293|consensus	519		99.87
KOG0318|consensus	603		99.87
KOG0292|consensus	1202		99.86
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
KOG0291|consensus	893		99.86
KOG0285|consensus	460		99.86
KOG0296|consensus	399		99.86
KOG0318|consensus	603		99.85
KOG0319|consensus	775		99.85
KOG0316|consensus	307		99.85
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.85
KOG0310|consensus	487		99.85
KOG0772|consensus	641		99.84
PLN00181	793	protein SPA1-RELATED; Provisional	99.84
KOG0640|consensus	430		99.84
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.84
KOG0281|consensus	499		99.84
KOG0268|consensus	433		99.84
KOG0302|consensus	440		99.84
KOG4283|consensus	397		99.83
KOG1407|consensus	313		99.83
KOG0302|consensus	440		99.83
KOG0306|consensus	888		99.83
KOG0973|consensus	942		99.82
KOG0275|consensus	508		99.82
KOG0313|consensus	423		99.82
KOG0316|consensus	307		99.82
KOG1407|consensus	313		99.82
KOG0269|consensus	839		99.82
KOG0971|consensus	1243		99.82
KOG1007|consensus	370		99.82
KOG1332|consensus	299		99.82
PTZ00421	493	coronin; Provisional	99.81
KOG0278|consensus	334		99.81
KOG0640|consensus	430		99.81
PTZ00420	568	coronin; Provisional	99.81
KOG0289|consensus	506		99.81
KOG0270|consensus	463		99.8
KOG0308|consensus	735		99.8
KOG0275|consensus	508		99.8
KOG0283|consensus	712		99.8
KOG0288|consensus	459		99.8
KOG0267|consensus	825		99.79
KOG0307|consensus	1049		99.79
KOG0973|consensus	942		99.78
KOG1332|consensus	299		99.78
KOG0274|consensus	537		99.78
KOG0772|consensus	641		99.78
KOG0641|consensus	350		99.77
KOG0647|consensus	347		99.77
KOG0282|consensus	503		99.77
KOG0294|consensus	362		99.76
KOG0268|consensus	433		99.76
KOG0301|consensus	745		99.76
KOG0300|consensus	481		99.76
KOG0270|consensus	463		99.76
KOG0646|consensus	476		99.75
KOG2096|consensus	420		99.75
KOG0639|consensus	705		99.74
KOG0647|consensus	347		99.73
KOG0267|consensus	825		99.73
KOG1036|consensus	323		99.73
KOG1446|consensus	311		99.72
KOG0300|consensus	481		99.72
KOG0308|consensus	735		99.72
KOG0299|consensus	479		99.72
KOG0289|consensus	506		99.72
KOG0641|consensus	350		99.72
KOG0296|consensus	399		99.72
KOG2445|consensus	361		99.72
KOG4283|consensus	397		99.72
KOG0283|consensus	712		99.71
KOG0321|consensus	720		99.71
KOG4328|consensus	498		99.71
KOG0299|consensus	479		99.7
KOG0646|consensus	476		99.7
KOG0301|consensus	745		99.7
KOG0307|consensus	1049		99.69
KOG0293|consensus	519		99.69
KOG0303|consensus	472		99.69
KOG0274|consensus	537		99.69
KOG1446|consensus	311		99.68
KOG0305|consensus	484		99.67
KOG0306|consensus	888		99.67
KOG0290|consensus	364		99.67
KOG1036|consensus	323		99.67
KOG0278|consensus	334		99.66
KOG0294|consensus	362		99.66
KOG1539|consensus	910		99.66
KOG0643|consensus	327		99.66
KOG0290|consensus	364		99.65
KOG4378|consensus	673		99.65
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.65
KOG0639|consensus	705		99.64
KOG1587|consensus	555		99.62
KOG4328|consensus	498		99.61
KOG0288|consensus	459		99.61
KOG0303|consensus	472		99.61
KOG1034|consensus	385		99.6
KOG0650|consensus	733		99.6
KOG1273|consensus	405		99.59
KOG1274|consensus	933		99.59
KOG4378|consensus	673		99.59
KOG1408|consensus	1080		99.58
KOG1188|consensus	376		99.58
KOG1009|consensus	434		99.57
KOG2048|consensus	691		99.57
KOG1408|consensus	1080		99.57
KOG0321|consensus	720		99.57
KOG1063|consensus	764		99.56
KOG1445|consensus	1012		99.55
KOG1539|consensus	910		99.54
KOG2919|consensus	406		99.54
KOG1274|consensus	933		99.54
KOG1310|consensus	758		99.53
KOG2055|consensus	514		99.53
KOG1273|consensus	405		99.53
KOG1445|consensus	1012		99.52
KOG0642|consensus	577		99.52
KOG2048|consensus	691		99.52
KOG2106|consensus	626		99.51
KOG2445|consensus	361		99.51
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.51
KOG1523|consensus	361		99.51
KOG1063|consensus	764		99.5
KOG2919|consensus	406		99.47
KOG1188|consensus	376		99.46
KOG2106|consensus	626		99.46
KOG2096|consensus	420		99.45
KOG0771|consensus	398		99.43
COG2319	466	FOG: WD40 repeat [General function prediction only	99.43
KOG2055|consensus	514		99.43
KOG1034|consensus	385		99.43
KOG1524|consensus	737		99.41
KOG1007|consensus	370		99.41
KOG2139|consensus	445		99.41
KOG1009|consensus	434		99.4
KOG2139|consensus	445		99.38
KOG1240|consensus	1431		99.37
KOG4227|consensus	609		99.37
KOG0322|consensus	323		99.37
KOG1524|consensus	737		99.37
COG2319	466	FOG: WD40 repeat [General function prediction only	99.36
PRK01742	429	tolB translocation protein TolB; Provisional	99.35
KOG1310|consensus	758		99.35
KOG0644|consensus	1113		99.34
KOG1517|consensus	1387		99.34
KOG0649|consensus	325		99.34
KOG2110|consensus	391		99.33
PRK02889	427	tolB translocation protein TolB; Provisional	99.32
PRK05137	435	tolB translocation protein TolB; Provisional	99.31
PRK11028	330	6-phosphogluconolactonase; Provisional	99.31
PRK11028	330	6-phosphogluconolactonase; Provisional	99.31
KOG1538|consensus	1081		99.3
PRK04922	433	tolB translocation protein TolB; Provisional	99.29
KOG2394|consensus	636		99.28
KOG1523|consensus	361		99.27
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.27
PRK03629	429	tolB translocation protein TolB; Provisional	99.27
KOG2111|consensus	346		99.27
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.27
KOG1517|consensus	1387		99.26
KOG0642|consensus	577		99.26
KOG0322|consensus	323		99.24
KOG4497|consensus	447		99.24
KOG1587|consensus	555		99.23
KOG1538|consensus	1081		99.21
KOG3881|consensus	412		99.21
KOG2110|consensus	391		99.2
KOG0649|consensus	325		99.2
KOG2394|consensus	636		99.2
PRK01029	428	tolB translocation protein TolB; Provisional	99.15
KOG0650|consensus	733		99.13
KOG0644|consensus	1113		99.12
PRK01742	429	tolB translocation protein TolB; Provisional	99.12
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.11
PRK05137	435	tolB translocation protein TolB; Provisional	99.1
KOG1963|consensus	792		99.1
KOG2111|consensus	346		99.09
KOG4547|consensus	541		99.09
KOG1272|consensus	545		99.08
KOG1963|consensus	792		99.08
PRK00178	430	tolB translocation protein TolB; Provisional	99.07
KOG0771|consensus	398		99.05
PRK04792	448	tolB translocation protein TolB; Provisional	99.03
KOG0280|consensus	339		99.03
KOG3881|consensus	412		99.02
PRK03629	429	tolB translocation protein TolB; Provisional	98.99
KOG1272|consensus	545		98.99
PRK02889	427	tolB translocation protein TolB; Provisional	98.98
KOG2321|consensus	703		98.97
KOG0280|consensus	339		98.97
KOG1334|consensus	559		98.96
KOG1334|consensus	559		98.94
KOG4497|consensus	447		98.94
PRK04922	433	tolB translocation protein TolB; Provisional	98.92
KOG1064|consensus	2439		98.91
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.91
PRK01029	428	tolB translocation protein TolB; Provisional	98.89
KOG4227|consensus	609		98.86
KOG0309|consensus	1081		98.84
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.84
KOG2321|consensus	703		98.81
KOG0974|consensus	967		98.8
KOG1409|consensus	404		98.78
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.78
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.77
PRK00178	430	tolB translocation protein TolB; Provisional	98.75
KOG0974|consensus	967		98.74
PRK04792	448	tolB translocation protein TolB; Provisional	98.72
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.7
PRK04043	419	tolB translocation protein TolB; Provisional	98.69
KOG4547|consensus	541		98.67
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.67
KOG1354|consensus	433		98.67
KOG2315|consensus	566		98.61
KOG4714|consensus	319		98.59
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.58
KOG0309|consensus	1081		98.57
KOG1240|consensus	1431		98.53
KOG3914|consensus	390		98.51
KOG1064|consensus	2439		98.46
KOG2315|consensus	566		98.46
KOG2041|consensus	1189		98.44
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.44
KOG1354|consensus	433		98.35
KOG4190|consensus	1034		98.32
KOG4532|consensus	344		98.32
KOG4532|consensus	344		98.23
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.2
COG4946	668	Uncharacterized protein related to the periplasmic	98.14
KOG1409|consensus	404		98.13
PRK04043	419	tolB translocation protein TolB; Provisional	98.12
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.11
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.05
KOG2695|consensus	425		98.02
KOG2314|consensus	698		97.98
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.97
KOG1275|consensus	1118		97.97
KOG4714|consensus	319		97.96
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.95
KOG1008|consensus	783		97.94
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.91
KOG1912|consensus	1062		97.88
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.88
KOG2041|consensus	1189		97.84
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.84
KOG0882|consensus	558		97.84
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.83
KOG1008|consensus	783		97.83
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.83
KOG4190|consensus	1034		97.82
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.81
KOG3914|consensus	390		97.81
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.79
KOG1645|consensus	463		97.78
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.77
KOG1912|consensus	1062		97.76
KOG1275|consensus	1118		97.76
KOG2695|consensus	425		97.75
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.73
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.69
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.67
KOG1645|consensus	463		97.65
COG4946	668	Uncharacterized protein related to the periplasmic	97.65
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.59
KOG2114|consensus	933		97.59
KOG2066|consensus	846		97.59
KOG3617|consensus	1416		97.54
KOG1832|consensus	1516		97.53
KOG1920|consensus	1265		97.48
KOG2066|consensus	846		97.44
KOG2314|consensus	698		97.39
KOG0882|consensus	558		97.33
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.33
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.27
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.21
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.14
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.12
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.08
KOG2114|consensus	933		96.95
KOG1832|consensus	1516		96.89
KOG1920|consensus	1265		96.74
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.71
PRK02888	635	nitrous-oxide reductase; Validated	96.67
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.63
KOG2395|consensus	644		96.54
KOG3617|consensus	1416		96.47
COG3391	381	Uncharacterized conserved protein [Function unknow	96.38
KOG3621|consensus	726		96.32
KOG4640|consensus	665		96.25
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.21
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.18
KOG3621|consensus	726		96.18
PRK02888	635	nitrous-oxide reductase; Validated	96.07
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.99
KOG4640|consensus	665		95.98
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.93
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.9
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.79
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.78
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.74
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.62
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	95.49
KOG4441|consensus	571		95.45
PRK13616	591	lipoprotein LpqB; Provisional	95.4
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.29
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	95.17
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.1
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	94.96
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.96
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.91
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.91
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.85
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.82
KOG2395|consensus	644		94.77
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	94.64
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.56
COG3391	381	Uncharacterized conserved protein [Function unknow	94.47
KOG2280|consensus	829		94.25
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.24
KOG4441|consensus	571		94.05
KOG2079|consensus	1206		93.93
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.88
KOG4649|consensus	354		93.66
KOG4649|consensus	354		93.3
PRK13616	591	lipoprotein LpqB; Provisional	93.3
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	93.28
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.23
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.2
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	93.02
PHA02713	557	hypothetical protein; Provisional	93.02
COG5276	370	Uncharacterized conserved protein [Function unknow	92.98
KOG3630|consensus	1405		92.95
KOG2079|consensus	1206		92.82
PHA02713	557	hypothetical protein; Provisional	92.3
KOG2444|consensus	238		92.22
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.16
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.13
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	91.91
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	91.89
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.45
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.26
PF14727	418	PHTB1_N: PTHB1 N-terminus	90.99
KOG1916|consensus	1283		90.82
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	90.72
PRK10115	686	protease 2; Provisional	90.47
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	90.46
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	90.16
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.15
KOG2444|consensus	238		90.02
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	89.51
KOG2377|consensus	657		89.38
KOG2247|consensus	615		88.84
PHA03098	534	kelch-like protein; Provisional	88.64
PRK10115	686	protease 2; Provisional	88.57
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	88.49
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	88.44
KOG4499|consensus	310		88.41
KOG1900|consensus	1311		88.31
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	88.18
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	88.11
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	87.63
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	87.55
KOG3630|consensus	1405		86.82
KOG2377|consensus	657		86.64
KOG2247|consensus	615		86.17
KOG1916|consensus	1283		86.17
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	85.33
PHA03098	534	kelch-like protein; Provisional	85.16
COG5167	776	VID27 Protein involved in vacuole import and degra	84.87
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.32
KOG4499|consensus	310		83.71
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	83.59
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	83.43
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	82.6
KOG1900|consensus	1311		82.38
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	80.06

>KOG3830|consensus

Probab=100.00  E-value=7.8e-90  Score=717.94  Aligned_cols=450  Identities=38%  Similarity=0.606  Sum_probs=392.3

Q ss_pred             ccccccCCCHHHHhcccCCChhhcCCcceEEEccEEEeecceeeecCC----------CCCCCCceEEEEEEEecCCCCc
Q psy4578         158 HTDCLTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDI----------KDKDSNATLINIVFALHAVARP  227 (860)
Q Consensus       158 ~~~~~~g~~~~~la~~l~p~~~lc~~~fel~vd~~~fvg~Pv~~~~~~----------~~~~~~~~~Fn~vfvl~~~~~~  227 (860)
                      +...+.||.+.+||++|+||.+||||+|||+|||+||||||++++..|          +.+.++|.+|||||||+++|++
T Consensus        69 ~dt~~~gfsdg~LA~~latk~elCnqkFElkidnvrFvg~Pt~i~~~g~~~~r~~p~~kqe~~~m~lfnvVFaL~a~a~p  148 (542)
T KOG3830|consen   69 DDTHVLGFSDGFLANMLATKIELCNQKFELKIDNVRFVGHPTLIGPNGEWAKRRKPRTKQESSSMSLFNVVFALNAPAAP  148 (542)
T ss_pred             ccchhhhhHHHHHHHHhhchHHHhCccceEEEcCeEEecCCceeccccccccccCCCcccccccceeEEEEEEecCCCch
Confidence            346689999999999999999999999999999999999999999887          2456789999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--ccCCCcchhHHHHHhhchhHHHHHHHHHHHhcCCeEEE
Q psy4578         228 SIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLE--EGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYI  305 (860)
Q Consensus       228 ~~~~~y~~v~~kl~~~l~~eq~~~~yv~~e~~~i~~~~~~--~~~~~~~~~~~~~l~~ssLa~~l~~~~~~l~~~~~~~l  305 (860)
                      +|..||+++++||+.+|+|||+|+|||++||+.|++...+  .+..+.+.++++|+.+|+||+.|+++||+|++.|.+++
T Consensus       149 sv~~~yh~Ls~klat~Lk~eq~r~gylerE~k~il~l~ee~~~qn~pp~~~le~ia~~s~Laq~Lae~ye~l~n~g~~~l  228 (542)
T KOG3830|consen  149 SVNTCYHHLSVKLATGLKYEQARRGYLERECKHILKLTEEYSSQNVPPDVYLEQIAHHSNLAQVLAETYEALCNMGTAYL  228 (542)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccCchhccCCCccchHHHhhhhhhHHHHHHHHHHHHHhcChhHH
Confidence            9999999999999999999999999999999988742222  12334456689999999999999999999999999999


Q ss_pred             EECCceeeeeecCcccccccccCCCCChhhhhhhccccccceeeccCCCchhhhhcCCCCCCHHHHHHHHHhCCCccHHH
Q psy4578         306 KINKNHQLSFCLPQKVHKLYCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQT  385 (860)
Q Consensus       306 ~in~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~lLll~d~~~i~~~~~~~~~~~l~~~i~~~~p~~s~~~  385 (860)
                      .||.|++++||+|.++|+.+..+++.+||++|++.+.++|||++|||.|.+.+++.+|.+++|.|.+||.+++|.+||++
T Consensus       229 ~in~~leLsfc~pakaht~la~~s~~~~E~idrilra~kPYhglLLL~D~~~ll~~vP~d~np~l~~li~~~sp~~slqd  308 (542)
T KOG3830|consen  229 EINQSLELSFCLPAKAHTILASQSIFSPEHIDRILRAVKPYHGLLLLKDTDTLLKRVPLDQNPLLSSLIAIVSPNLSLQD  308 (542)
T ss_pred             hhhhceeeeccchHHHHHHhhccccCChhhHHHHHhhhcccceeeeeechhhhhcCCCCccchHHHHHHHHhCccccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHhhhcccEEeeecCCCceEEeCCCCCCCCChHHHHHHHHhCCC-CCcHHHHhhccCcccccc
Q psy4578         386 LSADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPG-HSLLHEISEFSLPISLKH  464 (860)
Q Consensus       386 ia~~~~~~l~~v~~~a~HLvyw~~a~iI~~l~~~nvY~vsp~~~~~~~~~~~~~f~~~Fp~-~~l~~~l~~~s~~~~~~~  464 (860)
                      ||+.+|+++++||.+|+||||||||++|||||.+|||+.||+|+++.+++++++|+++||+ +.|..+|+.||.|+++.+
T Consensus       309 ma~~agisi~evf~La~HLv~W~KAiiIyPLcetNvYv~sp~a~l~~ls~laekFsaqFp~~~sL~~~LA~fslp~sl~~  388 (542)
T KOG3830|consen  309 MANRAGISISEVFILAKHLVYWRKAIIIYPLCETNVYVTSPTANLFNLSELAEKFSAQFPSLPSLSTVLAIFSLPPSLRP  388 (542)
T ss_pred             HhhhcCCCHHHHHHHHHHHHHHHhheeeccccccceeEecCCccccccHHHHHHHHhhcCCcccHHHHHHhcCCCCcchh
Confidence            9999999999999999999999999999999999999999999999999999999999995 679999999999999999


Q ss_pred             ccCCCCCchhhHHHHHHHHHHHhhhhHhhheeeEEEeeCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCccchhhhhhh
Q psy4578         465 RISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAPVSPPADQKPKFKSLPDESDADSPPLNFQVPPVYIEGERNMWN  544 (860)
Q Consensus       465 ~~~~~~~~~~~~~~~~~l~Wllr~~~v~qlht~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (860)
                      +.++++.++|+..+++||+|||||+||+|||||+|+++|+   +.+....++++.+.  +      +|..-..  ...++
T Consensus       389 f~~~l~p~~~egv~aqMvvwllrr~llmQlhtyvyil~pe---ei~~sa~~l~e~~e--s------~pn~l~~--~~~se  455 (542)
T KOG3830|consen  389 FASPLPPKDHEGVLAQMVVWLLRRNLLMQLHTYVYILVPE---EIKKSAIALIESDE--S------SPNDLQL--GKQSE  455 (542)
T ss_pred             hcCCCCChhhHhHHHHHHHHHHHHHHHHHHhheEEEecch---hccccceeccCCCC--C------ChhHhhc--ccccc
Confidence            9999998899999999999999999999999999999996   22223333333331  1      2322111  22334


Q ss_pred             hcccccccccccchhhhhhhhc-ccccccCCCCCcccccceeeeeeecceeecccceeEEEEeeccchhhhhhhhhcccc
Q psy4578         545 KLLSLAANDKIESDILALESEL-LPVFRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRL  623 (860)
Q Consensus       545 ~~~~l~ss~~~es~~~~~~k~l-L~~f~~l~a~~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~  623 (860)
                      +.++|+|.-    +.......+ -.+++.+++..+.+|..++.++.  .||+|.+++++++|-+|..+.++..++..+..
T Consensus       456 dd~~l~s~~----~l~~s~Sd~eraaI~~ipya~~pedlsLfvkl~--~yf~grhhLEeI~y~enl~Rsql~~lldkfrd  529 (542)
T KOG3830|consen  456 DDNGLESII----ILLHSASDLERAAIQIIPYARNPEDLSLFVKLV--KYFNGRHHLEEIMYAENLRRSQLLNLLDKFRD  529 (542)
T ss_pred             cccCcchHH----HHHHHHHHHHHHHHHhcchhcCchhHHHHHHHH--HHhcchhHHHHHHHhcCCCHHHHHHHHHHHhh
Confidence            444444310    011111111 13467899999999999999997  59999999999999999999999999998877


Q ss_pred             eee
Q psy4578         624 LID  626 (860)
Q Consensus       624 V~~  626 (860)
                      |.-
T Consensus       530 vi~  532 (542)
T KOG3830|consen  530 VIL  532 (542)
T ss_pred             eEE
Confidence            653

>PF03666 NPR3: Nitrogen Permease regulator of amino acid transport activity 3; InterPro: IPR005365 This protein, also known in yeasts as Rmd11, complexes with NPR2, PF06218 from PFAM

Probab=100.00  E-value=1.3e-86  Score=740.93  Aligned_cols=338  Identities=37%  Similarity=0.597  Sum_probs=305.6

Q ss_pred             CCCHHHHhcccCCChhhcCCcceEEEccEEEeecceeeecCCC-------------------------------------
Q psy4578         164 SLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIK-------------------------------------  206 (860)
Q Consensus       164 g~~~~~la~~l~p~~~lc~~~fel~vd~~~fvg~Pv~~~~~~~-------------------------------------  206 (860)
                      ||++++||++|+|+++||||||||+|||++||||||+++++|.                                     
T Consensus         1 g~~~~~l~~~l~p~~~~c~~~FEl~vd~~~fvg~Pv~~~~~g~w~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~   80 (452)
T PF03666_consen    1 GFPTEFLAELLSPKRELCNQRFELTVDDLRFVGHPVHVREDGTWRKKKKKKKKRSKRSKSSSSEGRKSDGSPDPNDDNSN   80 (452)
T ss_pred             CCChHHHHHhcCCCHHHhcCceEEEEcCeeEecCcccccccccccccccccccccccccccccccccccCCccccccccC
Confidence            8999999999999999999999999999999999999987651                                     


Q ss_pred             --------------------------------CCCCCceEEEEEEEecC---CCCchHHHHHHHHHHHHHHHHHHHHHhh
Q psy4578         207 --------------------------------DKDSNATLINIVFALHA---VARPSIVKCYYDLSKRLGKALKYEEERY  251 (860)
Q Consensus       207 --------------------------------~~~~~~~~Fn~vfvl~~---~~~~~~~~~y~~v~~kl~~~l~~eq~~~  251 (860)
                                                      +.+++|+||||||||+|   .+++++++||++|++||++||+|||.||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mtmFnvVFvL~P~~~e~~~~v~~~Y~~v~~kl~~aLk~EQ~r~  160 (452)
T PF03666_consen   81 SVDSEDDSSSSSDDESSPSNSDEDSKSDSSSEDDKSSMTMFNVVFVLNPPLAEYSQRVDEMYHNVSKKLAKALKYEQARC  160 (452)
T ss_pred             CCCCCCCCCCccccccccccccccccccCccccccCceeEEEEEEEeccchhhccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                                            24678999999999995   4789999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhh--hccCCCcchhHHHHHhhchhHHHHHHHHHHHhcCCeEEEEECCceeeeeecCcccccccccCC
Q psy4578         252 NYALQAAHDIVLSSL--EEGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIKINKNHQLSFCLPQKVHKLYCKGI  329 (860)
Q Consensus       252 ~yv~~e~~~i~~~~~--~~~~~~~~~~~~~~l~~ssLa~~l~~~~~~l~~~~~~~l~in~~~~~~~~lp~~~~~~~~~~~  329 (860)
                      +|||+|++.|+..+.  +++......+|++++.+|+||++|++||++|+++++|+|+||+|++++||||++++..++++.
T Consensus       161 ~YV~kE~~~Il~~kd~~~~~~~~~~~l~~~il~~SsLAr~L~~iy~~Is~s~iA~l~in~~~~~slqiP~~~~~~~lp~~  240 (452)
T PF03666_consen  161 GYVWKEAKLILKLKDKAREEGQSYESLYEEILKKSSLARALKDIYDAISTSGIAHLTINNWIEVSLQIPIKTEFSSLPGS  240 (452)
T ss_pred             cHHHHHHHHHHHHHHHhhhccCchhhHHHHHHHhCHHHHHHHHHHHHHhcCCeEEEEECCCcceeEecCcccchhhCCCc
Confidence            999999999985333  344456678999999999999999999999999999999999999999999999997655554


Q ss_pred             CCChhhh-----------------------hh----hccccccceeeccCCCchhhhhcCCC-CCCH---HHHHHHHHhC
Q psy4578         330 MMEPELI-----------------------DK----CMKNLKPYHGLLLLTEPTRLLDSLYP-DSST---PLIKLIKMYS  378 (860)
Q Consensus       330 ~~~~~~~-----------------------~~----~~~~l~p~~~lLll~d~~~i~~~~~~-~~~~---~l~~~i~~~~  378 (860)
                      ..+|...                       +.    ..+.|+||||||||+|+++|+++++. +.++   +|++||++++
T Consensus       241 ~~~p~~~~~~Lts~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~~aLLLL~d~~~ii~~l~~~~~s~~~~~L~~~i~~~~  320 (452)
T PF03666_consen  241 TIDPVLPGSWLTSILNDSEESRSWSNSQEFDERVRSDDDILRPYHALLLLDDPENIIKDLPASDSSPGAPALARFIRHAK  320 (452)
T ss_pred             ccCcccCccccccccccccccccccccccccccccccccccccceeeeecCCHHHHHhhCcccCCCchHHHHHHHHHhcC
Confidence            4322221                       11    13459999999999999999999998 5666   8999999999


Q ss_pred             CCccHHHHHh-cCCCCHHHHHHHHHHHhhhcccEEeeecCCCceEEeCCCCCCCCChHHHHHHHHhCCCC-CcHHHHhhc
Q psy4578         379 PLKSIQTLSA-DTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGH-SLLHEISEF  456 (860)
Q Consensus       379 p~~s~~~ia~-~~~~~l~~v~~~a~HLvyw~~a~iI~~l~~~nvY~vsp~~~~~~~~~~~~~f~~~Fp~~-~l~~~l~~~  456 (860)
                      |++||+++|. ++++++++|+++|+|||||||||||||+|.+|||||||++++..+++++++|+++||++ +|+.+|+.|
T Consensus       321 Pt~s~~~~a~~~~~l~l~~v~~la~HLVyWr~A~iI~pl~~~nvYivsP~a~~~~l~~l~~~F~~~FP~~P~L~~~Ls~~  400 (452)
T PF03666_consen  321 PTKSFQQLAQSDSDLPLSQVYSLARHLVYWRKARIIYPLSSRNVYIVSPNADLSKLSQLSEEFSKQFPTLPSLPKFLSLF  400 (452)
T ss_pred             CccCHHHHHhhhcCCCHHHHHHHHHHHHHhcCeeEEeccCCCCeEEECCCCCccccHHHHHHHHHHCcCCccHHHHHHHH
Confidence            9999999999 99999999999999999999999999999999999999999999999999999999997 599999999


Q ss_pred             c--CccccccccCCCCCchhhHHHHHHHHHHHhhhhHhhheeeEEEeeCC
Q psy4578         457 S--LPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAPVS  504 (860)
Q Consensus       457 s--~~~~~~~~~~~~~~~~~~~~~~~~l~Wllr~~~v~qlht~~~l~~~~  504 (860)
                      |  .|++++.++.   .++|+..|++||+||||||||||||||+|+++++
T Consensus       401 S~~~p~~~~~~ip---s~~~~~~y~~~l~WLlr~~~v~QL~tf~~l~v~~  447 (452)
T PF03666_consen  401 SSSKPRPFSSIIP---SKDHREIYLQMLAWLLRHGLVTQLHTFVYLRVPP  447 (452)
T ss_pred             hcCCCccHHHhCC---CHHHHHHHHHHHHHHHhCCchhhhheEEEEEeCH
Confidence            9  8888888763   4579999999999999999999999999999985

This complex heterodimer is responsible for inactivating TORC1. an evolutionarily conserved protein complex that controls cell size via nutritional input signals, specifically, in response to amino acid starvation [].

>PF06218 NPR2: Nitrogen permease regulator 2; InterPro: IPR009348 This family of regulators are involved in post-translational control of nitrogen permease

Probab=100.00  E-value=5.3e-45  Score=400.81  Aligned_cols=319  Identities=15%  Similarity=0.210  Sum_probs=272.1

Q ss_pred             ccCCCCCCcccccccCCCHHHHhcccCCChhhcCCcceEEEccEEEeecceeeecCCCCCCCCceEEEEEEEecCCCCch
Q psy4578         149 YIAPENSKVHTDCLTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNATLINIVFALHAVARPS  228 (860)
Q Consensus       149 ~~~~~~~~~~~~~~~g~~~~~la~~l~p~~~lc~~~fel~vd~~~fvg~Pv~~~~~~~~~~~~~~~Fn~vfvl~~~~~~~  228 (860)
                      |+.|+++.    .-..++|+.+++|++||++||||..+++.+++++|||||++++  .+|+||.++||+|||++..++  
T Consensus        23 ~Q~P~~~i----~~~~~~Fd~is~yIIPk~~lc~rlitv~~~~~kIlg~PV~I~~--~kY~RN~f~FN~cfV~~~~~~--   94 (428)
T PF06218_consen   23 HQVPEGSI----KPSLFNFDSISNYIIPKPELCNRLITVNAGGYKILGYPVCIED--PKYERNEFIFNFCFVFDYDSD--   94 (428)
T ss_pred             EECCcccc----cccccchhhcccEEecChHHhCceeEEeeCCeEEEEeeeEecC--CeeccceEEEEEEEEEcCCCC--
Confidence            55565554    2367889999999999999999999999999999999999954  459999999999999999988  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhccCCCcchhHHHHHhhchhHHHHHHHHHHHhcCCeEEEEEC
Q psy4578         229 IVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIKIN  308 (860)
Q Consensus       229 ~~~~y~~v~~kl~~~l~~eq~~~~yv~~e~~~i~~~~~~~~~~~~~~~~~~~l~~ssLa~~l~~~~~~l~~~~~~~l~in  308 (860)
                       ..+|+++|+|||++|+.+|.+++|||++.++......++...        -..+++|...|+++|++|+++++|.|+||
T Consensus        95 -~~~YepvV~KLa~~l~~LE~q~~fLS~~~~~~~~~~~~~~~~--------~~~~~~i~~Lle~i~~DLN~y~ec~Ipid  165 (428)
T PF06218_consen   95 -TSPYEPVVRKLARYLRELEEQSGFLSKEEKDPNFFKSKEIGS--------KISKSSIPSLLEQIFEDLNNYGECMIPID  165 (428)
T ss_pred             -ccchHHHHHHHHHHHHHHHHHhhhhcCccccccccccccccc--------cccHhHHHHHHHHHHHhhccccEEeeecC
Confidence             569999999999999999999999999876544322222211        12457899999999999999999999999


Q ss_pred             CceeeeeecCcccccccccCCCCChhhhhhhccccccceeeccCCCchhhhhcCCCCCCHHHHHHHHHhCCCccHHHHHh
Q psy4578         309 KNHQLSFCLPQKVHKLYCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLSA  388 (860)
Q Consensus       309 ~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~lLll~d~~~i~~~~~~~~~~~l~~~i~~~~p~~s~~~ia~  388 (860)
                      +.+++.++|.|....|                |.++.|++++++.+...+   .+.+||++|++++++|+|.+++++||.
T Consensus       166 ~~nti~lKlfp~~~~P----------------p~V~~~~VPv~~~~l~~~---~~~~wDlT~qkIlP~IdGvn~V~rIa~  226 (428)
T PF06218_consen  166 DANTINLKLFPLYPPP----------------PPVKDHDVPVFTVNLESL---VDENWDLTMQKILPYIDGVNHVRRIAQ  226 (428)
T ss_pred             CCcEEEEEecCCCCCC----------------CcCCccccceEEecHhhc---cCcccCHHHHHhhhhccCccHHHHHHH
Confidence            9999999997654332                568889999998887665   568999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHhhhcccEEeeecCCCceEEeCCCCCCCCChHHHHHHHHhCCC----------------------
Q psy4578         389 DTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPG----------------------  446 (860)
Q Consensus       389 ~~~~~l~~v~~~a~HLvyw~~a~iI~~l~~~nvY~vsp~~~~~~~~~~~~~f~~~Fp~----------------------  446 (860)
                      ++|+|+++|++|++||+||+++++||+|+++|+|+.+|........+..++-|+.|-.                      
T Consensus       227 ladvd~~Lv~~ci~hL~yYg~v~lidiFqfsNiY~~t~~i~~~~~d~~~~~eC~~YV~~~~~~~~~~~~~~~~~~~~s~~  306 (428)
T PF06218_consen  227 LADVDYELVKECIQHLLYYGCVILIDIFQFSNIYAPTPKIHDFLTDPDMQEECQAYVSKPGSSFSDADSVSTPSSSFSSL  306 (428)
T ss_pred             HHcCCHHHHHHHHHHHHhhCeeEEeeehhccceeecchhHHHHhcCHHHHHHHHHHhcCCCcccccccccccccccCCCc
Confidence            9999999999999999999999999999999999999998877777777888887711                      


Q ss_pred             -------------CC----cHHHHhhccCccccccccCCCCCchhhHHHHHHHHHHHhhhhHhhheeeEEEeeC
Q psy4578         447 -------------HS----LLHEISEFSLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAPV  503 (860)
Q Consensus       447 -------------~~----l~~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~Wllr~~~v~qlht~~~l~~~  503 (860)
                                   .|    |...+++|..+.++++|+.........-+.++++.+++.||+|.++|.|+.+...
T Consensus       307 ~~~~~~~~~~~~~~ps~~~l~~LY~sl~~G~tl~dw~~~~~~~~~~IDvRRfI~FGvikGfirRvh~YPv~~~~  380 (428)
T PF06218_consen  307 SSSHKSESSIESHLPSFSDLFRLYCSLQQGLTLKDWCERHSPRLNNIDVRRFIQFGVIKGFIRRVHKYPVLKKS  380 (428)
T ss_pred             cccccccccCccCCCCHHHHHHHHHhccCCCCHHHHHHHhhHhhcCCChHHhhHHHHHHHHHHHHhhcceeccc
Confidence                         12    5667788888999999986555445677788999999999999999999987654

>KOG3789|consensus

Probab=100.00  E-value=2.8e-43  Score=360.07  Aligned_cols=304  Identities=16%  Similarity=0.215  Sum_probs=267.5

Q ss_pred             cccCCCCCCcccccccCCCHHHHhcccCCChhhcCCcceEEEccEEEeecceeeecCCCCCCCCceEEEEEEEecCCCCc
Q psy4578         148 FYIAPENSKVHTDCLTSLSDEALSTLFAVKADLVDQKFELKINEVRFVGHPTLVQSDIKDKDSNATLINIVFALHAVARP  227 (860)
Q Consensus       148 ~~~~~~~~~~~~~~~~g~~~~~la~~l~p~~~lc~~~fel~vd~~~fvg~Pv~~~~~~~~~~~~~~~Fn~vfvl~~~~~~  227 (860)
                      +|++|++.+..     +.+|+++..|++||++|||+..+++..+++.|||||.+++.  .|++|.++||+|||++..+. 
T Consensus        37 ~~evP~~~i~n-----~~~F~tik~yIIPKp~L~~k~iTv~~~~~kvig~PV~I~~~--~Y~Rnaf~FNm~fV~d~~~~-  108 (396)
T KOG3789|consen   37 KCEVPKNNIKN-----EATFDTIKVYIIPKPELCRKLITVKAMRYKVIGYPVGIDHK--KYERNAFLFNMCFVFDMTAA-  108 (396)
T ss_pred             EEecCcccccc-----ccchhhhceeeccCHHHhceEEEEeeceeEEEeeceeeccc--hhhccceEEEEEEEeccccc-
Confidence            46666554422     88999999999999999999999999999999999999664  59999999999999999987 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhccCCCcchhHHHHHhhchhHHHHHHHHHHHhcCCeEEEEE
Q psy4578         228 SIVKCYYDLSKRLGKALKYEEERYNYALQAAHDIVLSSLEEGDRMSASGYELIIKQSDIAQNIKKVYDELVTSGLVYIKI  307 (860)
Q Consensus       228 ~~~~~y~~v~~kl~~~l~~eq~~~~yv~~e~~~i~~~~~~~~~~~~~~~~~~~l~~ssLa~~l~~~~~~l~~~~~~~l~i  307 (860)
                        ..||+++|+|||..|..+|.++.|||++..                       +-++...|.+++++|+++++|.++|
T Consensus       109 --s~~YePiVkkla~yl~~LE~e~~flS~~~~-----------------------k~~i~~vme~il~DLNn~~ec~i~v  163 (396)
T KOG3789|consen  109 --STMYEPIVKKLAEYLIVLEEESKFLSNEES-----------------------KDQIQDVMERILEDLNNKGECVIPV  163 (396)
T ss_pred             --cccchHHHHHHHHHHHHHHHHHHhhcChhh-----------------------hHHHHHHHHHHHHHhhhcccEEEEe
Confidence              569999999999999999999999998654                       3467788999999999999999999


Q ss_pred             CCceeeeeecCcccccccccCCCCChhhhhhhccccccceeeccCCCchhhhhcCCCCCCHHHHHHHHHhCCCccHHHHH
Q psy4578         308 NKNHQLSFCLPQKVHKLYCKGIMMEPELIDKCMKNLKPYHGLLLLTEPTRLLDSLYPDSSTPLIKLIKMYSPLKSIQTLS  387 (860)
Q Consensus       308 n~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~lLll~d~~~i~~~~~~~~~~~l~~~i~~~~p~~s~~~ia  387 (860)
                      ++.+++.++|-..-.         +       .|.++-|+++|++.+..++   +..+||+++++++++|++.+|+++||
T Consensus       164 d~~Nti~iKl~~~~p---------~-------pp~v~~~~VPl~t~~L~d~---~~~nwD~t~qkI~PyIdGiNsV~rIa  224 (396)
T KOG3789|consen  164 DEENTIIIKLFYRRP---------D-------PPEVKYHMVPLFTVNLTDH---LDENWDLTTQKILPYIDGINSVQRIA  224 (396)
T ss_pred             cCCCeEEEEEEEcCC---------C-------CCcccccccceeeeeHhhh---hhhccChhhhhhhhhccchhHHHHHH
Confidence            999999999942111         1       1445668999999777766   56699999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHhhhcccEEeeecCCCceEEeCCCCCCCCChHHHHHHHHhCCCC-----------CcHHHHhhc
Q psy4578         388 ADTSLPLVEISSLIGSLVYWGKASVIFPLCASNVYVVAQDASTHTNSSLVEKFMQAFPGH-----------SLLHEISEF  456 (860)
Q Consensus       388 ~~~~~~l~~v~~~a~HLvyw~~a~iI~~l~~~nvY~vsp~~~~~~~~~~~~~f~~~Fp~~-----------~l~~~l~~~  456 (860)
                      .+++++++.|.+|++||+||++..++|+|+++|||+.+++++....++..+.-|.+|-+.           .+..++.++
T Consensus       225 ~lanvd~~lv~~Ci~nl~YYgcVtL~~IfqysNiY~~T~~v~~ll~d~~~~~~C~~YVt~~~~~~~~pt~s~vF~LY~Sl  304 (396)
T KOG3789|consen  225 ALANVDPSLVARCIRNLLYYGCVTLVDIFQYSNIYAPTENVHNLLQDPSLQNDCLSYVTIQTEKGADPTFSDVFQLYCSL  304 (396)
T ss_pred             HHhcCCHHHHHHHHHhhHhhhhhhhhhHHhhhhhcccccchhhhhcCHHHHHHHHhheecCcccCCCccHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999988899999999999321           267788999


Q ss_pred             cCccccccccCCCCCchhhHHHHHHHHHHHhhhhHhhheeeEEEeeC
Q psy4578         457 SLPISLKHRISPLSYPHEQREISQMIVWMLQHRLLMQLHTYMFLAPV  503 (860)
Q Consensus       457 s~~~~~~~~~~~~~~~~~~~~~~~~l~Wllr~~~v~qlht~~~l~~~  503 (860)
                      +.+.++++|+.-.....+..+-.+++.++|.|+++.++|.|++.+.-
T Consensus       305 s~G~tlk~w~~~~~~~~~~iDeRRlI~FGl~k~~Irr~~KYPv~v~~  351 (396)
T KOG3789|consen  305 SQGNTLKDWADREKPQSMGIDERRLIQFGLHKRFIRRLHKYPVCVTN  351 (396)
T ss_pred             cCCccHHHHHHhcchhhcCccHHHHhhhhhHHHHHHHHhhCcEEecC
Confidence            99999999997666557788889999999999999999999987643

>KOG0272|consensus

Probab=99.97  E-value=5.7e-30  Score=268.57  Aligned_cols=250  Identities=22%  Similarity=0.351  Sum_probs=214.9

Q ss_pred             CcccccceeeeeeecceeecccceeEEEEeeccch-hhhhhhhhcccceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCC
Q psy4578         577 VTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTR-AQICQLLDKLRLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSH  654 (860)
Q Consensus       577 ~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~-~~l~~l~~~~~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~  654 (860)
                      ...+.+..+...++.|.+.|...      +|+... ..+..+.+|.+.|.++.|+|. ++..+|||+.||++++|++++ 
T Consensus       178 is~~~fS~ds~~laT~swsG~~k------vW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-  250 (459)
T KOG0272|consen  178 ISGCSFSRDSKHLATGSWSGLVK------VWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-  250 (459)
T ss_pred             ceeeEeecCCCeEEEeecCCcee------EeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-
Confidence            34456667777788888887643      444433 445556788899999999997 467899999999999999987 


Q ss_pred             CcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc---------------------------ccCCCcE
Q psy4578         655 NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE---------------------------ENYDQKL  707 (860)
Q Consensus       655 ~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~---------------------------~~~dg~I  707 (860)
                        ..++..+.+|...|..++|+|+|++ |+|++.|.+=++|+..+.                           ++-|..-
T Consensus       251 --e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~  327 (459)
T KOG0272|consen  251 --ETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG  327 (459)
T ss_pred             --CcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchh
Confidence              4678899999999999999999996 999999999888887754                           2345567


Q ss_pred             EEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCE
Q psy4578         708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI  787 (860)
Q Consensus       708 ~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~l  787 (860)
                      +|||++++   ..+-.+.+|..+|.+++|+|+|.. +||||.|++++|||++.... +..+.+|.+-|+.++|+|.+.++
T Consensus       328 RvWDlRtg---r~im~L~gH~k~I~~V~fsPNGy~-lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~f  402 (459)
T KOG0272|consen  328 RVWDLRTG---RCIMFLAGHIKEILSVAFSPNGYH-LATGSSDNTCKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYF  402 (459)
T ss_pred             heeecccC---cEEEEecccccceeeEeECCCceE-EeecCCCCcEEEeeeccccc-ceecccccchhhheEecccCCeE
Confidence            89999998   778889999999999999999985 99999999999999999887 89999999999999999966667


Q ss_pred             EEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         788 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       788 L~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |+||+.|+++++|...+              ..++.++.||.+.|.+++.++|+.+ +++++.|.++++
T Consensus       403 L~TasyD~t~kiWs~~~--------------~~~~ksLaGHe~kV~s~Dis~d~~~-i~t~s~DRT~KL  456 (459)
T KOG0272|consen  403 LVTASYDNTVKIWSTRT--------------WSPLKSLAGHEGKVISLDISPDSQA-IATSSFDRTIKL  456 (459)
T ss_pred             EEEcccCcceeeecCCC--------------cccchhhcCCccceEEEEeccCCce-EEEeccCceeee
Confidence            99999999999999888              4556677799999999999999995 789999999986

>KOG0263|consensus

Probab=99.96  E-value=5.8e-29  Score=279.51  Aligned_cols=247  Identities=26%  Similarity=0.420  Sum_probs=209.2

Q ss_pred             ccCCCCCcccccceeeeeeecceeecccceeEEEE--------------------------eeccchhhhhhhhhcccce
Q psy4578         571 RKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMY--------------------------LENKTRAQICQLLDKLRLL  624 (860)
Q Consensus       571 ~~l~a~~~~~D~~l~~~ll~~G~~~Gs~~l~~il~--------------------------l~n~~~~~l~~l~~~~~~V  624 (860)
                      .......++.++.-...++++|+.+.....+...-                          .+.........+.+|.++|
T Consensus       375 ~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV  454 (707)
T KOG0263|consen  375 HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV  454 (707)
T ss_pred             EEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence            33334456667777777888887766655544431                          1111222334477899999


Q ss_pred             eeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCC
Q psy4578         625 IDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYD  704 (860)
Q Consensus       625 ~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~d  704 (860)
                      ..++|+| +.++|++||.|+++|+|.+.+   ...+..+.+|..+|+++.|+|.|-| ||||+.|++             
T Consensus       455 yg~sFsP-d~rfLlScSED~svRLWsl~t---~s~~V~y~GH~~PVwdV~F~P~GyY-Fatas~D~t-------------  516 (707)
T KOG0263|consen  455 YGCSFSP-DRRFLLSCSEDSSVRLWSLDT---WSCLVIYKGHLAPVWDVQFAPRGYY-FATASHDQT-------------  516 (707)
T ss_pred             eeeeecc-cccceeeccCCcceeeeeccc---ceeEEEecCCCcceeeEEecCCceE-EEecCCCce-------------
Confidence            9999999 899999999999999999998   4667788899999999999999986 999999999             


Q ss_pred             CcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCC
Q psy4578         705 QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN  784 (860)
Q Consensus       705 g~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g  784 (860)
                        .++|.....   .+.+.+.+|-+.|.|+.|||++.| ++|||.|.+|++||+.++.. ++.|.||.++|.+++|+|+|
T Consensus       517 --ArLWs~d~~---~PlRifaghlsDV~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~G  589 (707)
T KOG0263|consen  517 --ARLWSTDHN---KPLRIFAGHLSDVDCVSFHPNSNY-VATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCG  589 (707)
T ss_pred             --eeeeecccC---CchhhhcccccccceEEECCcccc-cccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCC
Confidence              999998875   788899999999999999999997 99999999999999999998 99999999999999999999


Q ss_pred             CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee-cc
Q psy4578         785 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK-PF  858 (860)
Q Consensus       785 ~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI-~f  858 (860)
                      ++ |++|+.||.|.+||+.++              .++..+.+|++.|.++.|+.+|. ++|+||.|+.|++ ++
T Consensus       590 r~-LaSg~ed~~I~iWDl~~~--------------~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  590 RY-LASGDEDGLIKIWDLANG--------------SLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDL  648 (707)
T ss_pred             ce-EeecccCCcEEEEEcCCC--------------cchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEc
Confidence            97 999999999999999984              34556678999999999999999 7889999999986 44

>KOG0271|consensus

Probab=99.96  E-value=4e-28  Score=251.33  Aligned_cols=255  Identities=27%  Similarity=0.450  Sum_probs=214.5

Q ss_pred             CcccccceeeeeeecceeecccceeEEEEeeccchhh--hhhhhhcccceeeeEeecc----CCcEEEEEeCCCcEEEEE
Q psy4578         577 VTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQ--ICQLLDKLRLLIDVAWHLL----HESLFGSVADDQKLMIWD  650 (860)
Q Consensus       577 ~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~--l~~l~~~~~~V~~v~~sp~----~~~~lasgs~DG~I~IWd  650 (860)
                      ..+..+.+++.....|....++.....+.+|+...++  ...+.+|...|++++|.|-    ..++||+++.||.|+|||
T Consensus       154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd  233 (480)
T KOG0271|consen  154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD  233 (480)
T ss_pred             cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence            4556677777766667666666666667777755443  3446678889999999873    456899999999999999


Q ss_pred             cCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc------------------------------
Q psy4578         651 TRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE------------------------------  700 (860)
Q Consensus       651 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~------------------------------  700 (860)
                      +..   ..++..+.+|..+|+|+.|--+  .++++|+.|++|.+|+...+                              
T Consensus       234 ~~~---~~~~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~  308 (480)
T KOG0271|consen  234 TKL---GTCVRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFD  308 (480)
T ss_pred             ccC---ceEEEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccc
Confidence            987   4668889999999999999744  46999999999999987653                              


Q ss_pred             ---------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEe
Q psy4578         701 ---------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG  747 (860)
Q Consensus       701 ---------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasg  747 (860)
                                                       +..|..+.+|+....  .+++..+.+|..-|+.+.|+||+.+ +|++
T Consensus       309 ~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~--kkpi~rmtgHq~lVn~V~fSPd~r~-IASa  385 (480)
T KOG0271|consen  309 HTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS--KKPITRMTGHQALVNHVSFSPDGRY-IASA  385 (480)
T ss_pred             cccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc--ccchhhhhchhhheeeEEECCCccE-EEEe
Confidence                                             134667889987654  2577788999999999999999996 9999


Q ss_pred             eCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecC
Q psy4578         748 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG  827 (860)
Q Consensus       748 s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~  827 (860)
                      |.|.+|++||.++++. +.++.+|-+.|+.++|+.|.+ +|++|+.|.++++||+++              ..+...+.|
T Consensus       386 SFDkSVkLW~g~tGk~-lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~t--------------kKl~~DLpG  449 (480)
T KOG0271|consen  386 SFDKSVKLWDGRTGKF-LASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRT--------------KKLKQDLPG  449 (480)
T ss_pred             ecccceeeeeCCCcch-hhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeee--------------eeecccCCC
Confidence            9999999999999998 899999999999999999998 699999999999999998              345666779


Q ss_pred             ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         828 HTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       828 h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |...|.++.|+|||. .+++|+.|..+++
T Consensus       450 h~DEVf~vDwspDG~-rV~sggkdkv~~l  477 (480)
T KOG0271|consen  450 HADEVFAVDWSPDGQ-RVASGGKDKVLRL  477 (480)
T ss_pred             CCceEEEEEecCCCc-eeecCCCceEEEe
Confidence            999999999999999 5889999999986

>KOG0272|consensus

Probab=99.96  E-value=4.1e-28  Score=254.65  Aligned_cols=218  Identities=25%  Similarity=0.419  Sum_probs=194.4

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC-CCeEEEEEeCCCcee
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY-SEYILATGSADKTQF  693 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-g~~llasgs~Dg~i~  693 (860)
                      ...++...+|..+.|+. ++..++||+.+|.++||+..+.   ..++++.+|...|.++.|+|. ...-+++|+.||++.
T Consensus       169 ~SQ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk  244 (459)
T KOG0272|consen  169 CSQVGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK  244 (459)
T ss_pred             hhhccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCcee
Confidence            33456667899999997 8999999999999999999884   668899999999999999998 354599999999999


Q ss_pred             eeccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEE
Q psy4578         694 EVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT  746 (860)
Q Consensus       694 ~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llas  746 (860)
                      +|..+++                           +.+|..-++||++++   ..+....||...|.+++|+|+|. +++|
T Consensus       245 lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk---~ElL~QEGHs~~v~~iaf~~DGS-L~~t  320 (459)
T KOG0272|consen  245 LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK---SELLLQEGHSKGVFSIAFQPDGS-LAAT  320 (459)
T ss_pred             eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc---hhhHhhcccccccceeEecCCCc-eeec
Confidence            9998874                           246777899999997   55666789999999999999999 7999


Q ss_pred             eeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec
Q psy4578         747 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG  826 (860)
Q Consensus       747 gs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~  826 (860)
                      |+.|..-+|||+|++.+ +..+.+|..+|.+++|+|+|. .++|||.|++++|||++.              ...++...
T Consensus       321 GGlD~~~RvWDlRtgr~-im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~--------------r~~ly~ip  384 (459)
T KOG0272|consen  321 GGLDSLGRVWDLRTGRC-IMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRM--------------RSELYTIP  384 (459)
T ss_pred             cCccchhheeecccCcE-EEEecccccceeeEeECCCce-EEeecCCCCcEEEeeecc--------------cccceecc
Confidence            99999999999999998 888999999999999999996 599999999999999998              34467778


Q ss_pred             CccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         827 GHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       827 ~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|.+-|+.++|+|.+.++++|+|.|++++|
T Consensus       385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~ki  414 (459)
T KOG0272|consen  385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKI  414 (459)
T ss_pred             cccchhhheEecccCCeEEEEcccCcceee
Confidence            999999999999977778999999999987

>KOG0264|consensus

Probab=99.95  E-value=1.1e-27  Score=254.68  Aligned_cols=225  Identities=60%  Similarity=1.025  Sum_probs=206.8

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc----ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV----SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~----~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      .+.+|.+.-.+++|+++....+++|+.|++|++||+.....    ..+...+.+|...|..++|++....+|++++.|+.
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~  251 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK  251 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence            56677766888999998888999999999999999986433    34567788999999999999999889999999998


Q ss_pred             eeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccC
Q psy4578         692 QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH  771 (860)
Q Consensus       692 i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h  771 (860)
                                     +.|||+++. ..+......+|++.|.|++|+|-+.++|||||.|++|.+||+|+...+++.+.+|
T Consensus       252 ---------------L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H  315 (422)
T KOG0264|consen  252 ---------------LMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH  315 (422)
T ss_pred             ---------------EEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC
Confidence                           999999974 4477778899999999999999999999999999999999999999889999999


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D  851 (860)
                      ...|.++.|+|....+|+++|.|+++.+||+..-...+.......+++.+++.+.||.+.|.++.|+|+.++++++.++|
T Consensus       316 ~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD  395 (422)
T KOG0264|consen  316 EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED  395 (422)
T ss_pred             CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC
Confidence            99999999999999999999999999999999988887777888899999999999999999999999999999999999


Q ss_pred             CeEee
Q psy4578         852 NIMQK  856 (860)
Q Consensus       852 g~IrI  856 (860)
                      ++++|
T Consensus       396 N~LqI  400 (422)
T KOG0264|consen  396 NILQI  400 (422)
T ss_pred             ceEEE
Confidence            99987

>KOG0271|consensus

Probab=99.95  E-value=1.7e-27  Score=246.65  Aligned_cols=256  Identities=20%  Similarity=0.317  Sum_probs=214.8

Q ss_pred             cccccceeeeeeecceeecccceeEEEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc
Q psy4578         578 TQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV  656 (860)
Q Consensus       578 ~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~  656 (860)
                      .+..-.++.++...|....++.....+.+|+..... +....+|..-|.|++|+| ++..+|+|+.||+|++||..+++ 
T Consensus       113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpktg~-  190 (480)
T KOG0271|consen  113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQ-  190 (480)
T ss_pred             CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECC-CcchhhccccCCeEEEecCCCCC-
Confidence            445566777777766665555666666677765554 555567778899999999 89999999999999999999874 


Q ss_pred             ccCeeeccCCCCCeeEEEEcc-----CCCeEEEEEeCCCceeeeccccc--------------------------ccCCC
Q psy4578         657 SKPSHTVDAHTAEVNCLSFNP-----YSEYILATGSADKTQFEVEEEEE--------------------------ENYDQ  705 (860)
Q Consensus       657 ~~~~~~~~~h~~~V~~l~~sp-----~g~~llasgs~Dg~i~~~~~~~~--------------------------~~~dg  705 (860)
                       .....+.+|...|++++|.|     ..+ .+++++.||++++|+....                          ++.|+
T Consensus       191 -~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~Dr  268 (480)
T KOG0271|consen  191 -QIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDR  268 (480)
T ss_pred             -cccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCc
Confidence             44577889999999999976     455 5999999999999987763                          35688


Q ss_pred             cEEEEeCCCCCCCCCeeeecCCCCCeEEEEEc-----------CCCCc------------------------EEEEeeCC
Q psy4578         706 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN-----------PYSEY------------------------ILATGSAD  750 (860)
Q Consensus       706 ~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~s-----------p~g~~------------------------llasgs~D  750 (860)
                      .|++|+...+   .....+++|...|+.++.+           |.+.+                        .+++|+.|
T Consensus       269 tIkvw~a~dG---~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd  345 (480)
T KOG0271|consen  269 TIKVWRALDG---KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD  345 (480)
T ss_pred             eEEEEEccch---hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence            9999999887   6778899999999999887           22322                        48999999


Q ss_pred             CcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccC
Q psy4578         751 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA  830 (860)
Q Consensus       751 g~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~  830 (860)
                      +++.+|+......++..+.+|...|+.+.|+||+++ +++++.|..|++||.+++              +.+.++.||-+
T Consensus       346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~-IASaSFDkSVkLW~g~tG--------------k~lasfRGHv~  410 (480)
T KOG0271|consen  346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY-IASASFDKSVKLWDGRTG--------------KFLASFRGHVA  410 (480)
T ss_pred             ceEEEecccccccchhhhhchhhheeeEEECCCccE-EEEeecccceeeeeCCCc--------------chhhhhhhccc
Confidence            999999998877778899999999999999999996 999999999999999984              45667779999


Q ss_pred             ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         831 KISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       831 ~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .|+.++|+.|.+ |+++||.|.++++
T Consensus       411 ~VYqvawsaDsR-LlVS~SkDsTLKv  435 (480)
T KOG0271|consen  411 AVYQVAWSADSR-LLVSGSKDSTLKV  435 (480)
T ss_pred             eeEEEEeccCcc-EEEEcCCCceEEE
Confidence            999999999999 8999999999986

>KOG0284|consensus

Probab=99.94  E-value=3.3e-26  Score=239.30  Aligned_cols=239  Identities=23%  Similarity=0.417  Sum_probs=205.6

Q ss_pred             ccccceeeeeeecceeecccceeEEEEeeccchhhhhhhhhcc-cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc
Q psy4578         579 QEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKL-RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS  657 (860)
Q Consensus       579 ~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~-~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~  657 (860)
                      +++....+.....|.+.-+++...++.+|......+.....|+ ..|.+++|+| ++..|++|+.||+|+|||....   
T Consensus       137 HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~---  212 (464)
T KOG0284|consen  137 HDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMP---  212 (464)
T ss_pred             hcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCC---
Confidence            3444555555556777666677777888888888888888887 8899999999 7888999999999999999874   


Q ss_pred             cCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEc
Q psy4578         658 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN  737 (860)
Q Consensus       658 ~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~s  737 (860)
                      +....+.+|.-.|.|+.|+|... ++++||.|..               |++||.+++   ..+.++.+|...|..+.|+
T Consensus       213 kee~vL~GHgwdVksvdWHP~kg-LiasgskDnl---------------VKlWDprSg---~cl~tlh~HKntVl~~~f~  273 (464)
T KOG0284|consen  213 KEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNL---------------VKLWDPRSG---SCLATLHGHKNTVLAVKFN  273 (464)
T ss_pred             chhheeccCCCCcceeccCCccc-eeEEccCCce---------------eEeecCCCc---chhhhhhhccceEEEEEEc
Confidence            44456689999999999999877 7999999998               999999998   7788899999999999999


Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCC
Q psy4578         738 PYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG  817 (860)
Q Consensus       738 p~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~  817 (860)
                      |++++ |+|+|.|..++++|+++.+. +..+.+|...|+++.|+|-...+|.+||.||.|..|.+......         
T Consensus       274 ~n~N~-Llt~skD~~~kv~DiR~mkE-l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~---------  342 (464)
T KOG0284|consen  274 PNGNW-LLTGSKDQSCKVFDIRTMKE-LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL---------  342 (464)
T ss_pred             CCCCe-eEEccCCceEEEEehhHhHH-HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc---------
Confidence            99975 99999999999999997776 88899999999999999998889999999999999999843222         


Q ss_pred             CCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         818 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       818 ~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                          .....+|...|++++|+|-|. ++++|+.|.++++
T Consensus       343 ----~~i~~AHd~~iwsl~~hPlGh-il~tgsnd~t~rf  376 (464)
T KOG0284|consen  343 ----GEIPPAHDGEIWSLAYHPLGH-ILATGSNDRTVRF  376 (464)
T ss_pred             ----cCCCcccccceeeeeccccce-eEeecCCCcceee
Confidence                222347999999999999998 8999999999986

>KOG0273|consensus

Probab=99.94  E-value=4.5e-25  Score=234.53  Aligned_cols=209  Identities=23%  Similarity=0.462  Sum_probs=187.0

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc-
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE-  700 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~-  700 (860)
                      ..|++++|+. ++.+||+|+.||.+++|+...    ..+.++..|.++|.++.|+..|.| +++++.|+++.+|+.... 
T Consensus       236 kdVT~L~Wn~-~G~~LatG~~~G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g~  309 (524)
T KOG0273|consen  236 KDVTSLDWNN-DGTLLATGSEDGEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTGT  309 (524)
T ss_pred             CCcceEEecC-CCCeEEEeecCcEEEEEecCc----hhhhhhhccCCceEEEEEcCCCCE-EEeccCCccEEEEeccCce
Confidence            5799999996 899999999999999999874    557788899999999999999998 889999999999987433 


Q ss_pred             -------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEE
Q psy4578         701 -------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL  755 (860)
Q Consensus       701 -------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~I  755 (860)
                                               ...||.|+++.+...   .++.++.+|.+.|.++.|+|.|. +|+++|.|++++|
T Consensus       310 ~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~---~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~Tlki  385 (524)
T KOG0273|consen  310 VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED---RPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKI  385 (524)
T ss_pred             EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC---CcceeeecccCceEEEEECCCCc-eEEEecCCCeeEe
Confidence                                     245788999988765   78889999999999999999999 7999999999999


Q ss_pred             EeCCCCceeeEEeccCCCceEEEEEcCCCC--------CEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecC
Q psy4578         756 WDLRNLKLKLHSFESHKDEIFQVQWSPHNE--------TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG  827 (860)
Q Consensus       756 WDl~~~~~~~~~~~~h~~~V~~l~fsp~g~--------~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~  827 (860)
                      |....... ...+.+|...|..+.|+|.|+        ..+++++.|++|++||+..              +.+++.+..
T Consensus       386 Ws~~~~~~-~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~--------------gv~i~~f~k  450 (524)
T KOG0273|consen  386 WSMGQSNS-VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES--------------GVPIHTLMK  450 (524)
T ss_pred             eecCCCcc-hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC--------------CceeEeecc
Confidence            99887776 888999999999999999753        3689999999999999998              566788889


Q ss_pred             ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         828 HTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       828 h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |..+|.+++|+|+|+| +|+|+.||.|+|
T Consensus       451 H~~pVysvafS~~g~y-lAsGs~dg~V~i  478 (524)
T KOG0273|consen  451 HQEPVYSVAFSPNGRY-LASGSLDGCVHI  478 (524)
T ss_pred             CCCceEEEEecCCCcE-EEecCCCCeeEe
Confidence            9999999999999996 789999999987

>KOG0273|consensus

Probab=99.93  E-value=1.2e-24  Score=231.30  Aligned_cols=237  Identities=26%  Similarity=0.434  Sum_probs=196.5

Q ss_pred             ccceeeeeeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc----
Q psy4578         581 DLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV----  656 (860)
Q Consensus       581 D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~----  656 (860)
                      ++.-.+.+++.|.++|.      ..+|+.....+..+-.|.++|.++.|+. .++++++++.||++.+||..++..    
T Consensus       242 ~Wn~~G~~LatG~~~G~------~riw~~~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f  314 (524)
T KOG0273|consen  242 DWNNDGTLLATGSEDGE------ARIWNKDGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQF  314 (524)
T ss_pred             EecCCCCeEEEeecCcE------EEEEecCchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEee
Confidence            45555667777777764      6678888888888889999999999997 899999999999999999854321    


Q ss_pred             ----------------------------------ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578         657 ----------------------------------SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN  702 (860)
Q Consensus       657 ----------------------------------~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~  702 (860)
                                                        ..++.++.+|.+.|.++.|+|.|. +|++++.|++           
T Consensus       315 ~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~T-----------  382 (524)
T KOG0273|consen  315 EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGT-----------  382 (524)
T ss_pred             eeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCe-----------
Confidence                                              135667789999999999999998 7999999999           


Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCC--------cEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE--------YILATGSADKTVALWDLRNLKLKLHSFESHKDE  774 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~--------~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~  774 (860)
                          ++||+....   .....+.+|...|..+.|+|.|.        ..+++++.|++|++||+..+.+ ++.+..|..+
T Consensus       383 ----lkiWs~~~~---~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~-i~~f~kH~~p  454 (524)
T KOG0273|consen  383 ----LKIWSMGQS---NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP-IHTLMKHQEP  454 (524)
T ss_pred             ----eEeeecCCC---cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce-eEeeccCCCc
Confidence                999998776   56677889999999999999652        3689999999999999999987 8999999999


Q ss_pred             eEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         775 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      |++++|+|+|++ +++|+.||.|++|+++++..              .....+ .+.|..++|+.+|.++.++.++....
T Consensus       455 VysvafS~~g~y-lAsGs~dg~V~iws~~~~~l--------------~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vc  518 (524)
T KOG0273|consen  455 VYSVAFSPNGRY-LASGSLDGCVHIWSTKTGKL--------------VKSYQG-TGGIFELCWNAAGDKLGACASDGSVC  518 (524)
T ss_pred             eEEEEecCCCcE-EEecCCCCeeEeccccchhe--------------eEeecC-CCeEEEEEEcCCCCEEEEEecCCCce
Confidence            999999999997 99999999999999998443              333333 56699999999999755555554444


Q ss_pred             eeccCC
Q psy4578         855 QKPFKK  860 (860)
Q Consensus       855 rI~f~k  860 (860)
                      -++|+|
T Consensus       519 vldlr~  524 (524)
T KOG0273|consen  519 VLDLRK  524 (524)
T ss_pred             EEEecC
Confidence            457765

>KOG0286|consensus

Probab=99.93  E-value=7.9e-25  Score=220.50  Aligned_cols=237  Identities=23%  Similarity=0.322  Sum_probs=193.1

Q ss_pred             cccccceeeeeeecceeecccceeEEEEeeccch-hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc
Q psy4578         578 TQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTR-AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV  656 (860)
Q Consensus       578 ~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~-~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~  656 (860)
                      -.+.|..+.+++++|.++..-.+..+-..++... .....+.+|.+.+.|+.|-.  +..++|++.|.++.+||++++  
T Consensus       101 MtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g--  176 (343)
T KOG0286|consen  101 MTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETG--  176 (343)
T ss_pred             EEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccc--
Confidence            3456777777777775543322222211111111 22344667888999999984  677899999999999999995  


Q ss_pred             ccCeeeccCCCCCeeEEEEcc-CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEE
Q psy4578         657 SKPSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS  735 (860)
Q Consensus       657 ~~~~~~~~~h~~~V~~l~~sp-~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~  735 (860)
                       +....+.+|.+.|.++.++| +++ .|++|+-|+.               .++||++.+   ..+.+|.+|...|++++
T Consensus       177 -~~~~~f~GH~gDV~slsl~p~~~n-tFvSg~cD~~---------------aklWD~R~~---~c~qtF~ghesDINsv~  236 (343)
T KOG0286|consen  177 -QQTQVFHGHTGDVMSLSLSPSDGN-TFVSGGCDKS---------------AKLWDVRSG---QCVQTFEGHESDINSVR  236 (343)
T ss_pred             -eEEEEecCCcccEEEEecCCCCCC-eEEecccccc---------------eeeeeccCc---ceeEeecccccccceEE
Confidence             66788999999999999999 555 6999999998               999999998   77889999999999999


Q ss_pred             EcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec--cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccc
Q psy4578         736 FNPYSEYILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED  813 (860)
Q Consensus       736 ~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~--~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~  813 (860)
                      |.|+|.- ++||+.|+++++||+|..+. +..+.  .-..+|++++|+..|+ +|++|..|.++.+||.-.         
T Consensus       237 ffP~G~a-fatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk---------  304 (343)
T KOG0286|consen  237 FFPSGDA-FATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLK---------  304 (343)
T ss_pred             EccCCCe-eeecCCCceeEEEeecCCcE-EeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccc---------
Confidence            9999995 99999999999999999876 55555  2346899999999998 588889999999999877         


Q ss_pred             ccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         814 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       814 ~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                           ...+..+.||.+.|+++..+|||. .+++||.|..+||
T Consensus       305 -----~e~vg~L~GHeNRvScl~~s~DG~-av~TgSWDs~lri  341 (343)
T KOG0286|consen  305 -----GERVGVLAGHENRVSCLGVSPDGM-AVATGSWDSTLRI  341 (343)
T ss_pred             -----cceEEEeeccCCeeEEEEECCCCc-EEEecchhHheee
Confidence                 345677789999999999999999 6999999999987

>KOG0277|consensus

Probab=99.92  E-value=1.6e-24  Score=214.43  Aligned_cols=215  Identities=29%  Similarity=0.475  Sum_probs=191.5

Q ss_pred             chhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCC
Q psy4578         610 TRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD  689 (860)
Q Consensus       610 ~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~D  689 (860)
                      .+-...+.+.-.+.+.+++|++...+.+++++.||++++||...  ...++..++.|...|.++.|++..++.+++++.|
T Consensus        49 ~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD  126 (311)
T KOG0277|consen   49 KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD  126 (311)
T ss_pred             CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccceeEEeeccC
Confidence            33445555666788999999998899999999999999999543  3578899999999999999999888889999999


Q ss_pred             CceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec
Q psy4578         690 KTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE  769 (860)
Q Consensus       690 g~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~  769 (860)
                      |+               |++|+...+   ..+.++.+|...|....|+|....+++++|.||.+++||++.... ...+.
T Consensus       127 ~T---------------iKLW~~~r~---~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-~~~i~  187 (311)
T KOG0277|consen  127 GT---------------IKLWDPNRP---NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-FMSIE  187 (311)
T ss_pred             Cc---------------eEeecCCCC---cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-eeEEE
Confidence            99               999998876   678899999999999999998888999999999999999998765 44588


Q ss_pred             cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       770 ~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      .|...+.++.|+.-.+++++||+.|+.|+.||+++.+             .++..+.+|.-.|..++|||...-++++++
T Consensus       188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSas  254 (311)
T KOG0277|consen  188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-------------TPLFELNGHGLAVRKVKFSPHHASLLASAS  254 (311)
T ss_pred             eccceeEeecccccCCcEEEecCCCceEEEEehhhcc-------------ccceeecCCceEEEEEecCcchhhHhhhcc
Confidence            9999999999999999999999999999999999844             357788999999999999999988999999


Q ss_pred             CCCeEee-cc
Q psy4578         850 EDNIMQK-PF  858 (860)
Q Consensus       850 ~Dg~IrI-~f  858 (860)
                      .|-++|| +|
T Consensus       255 YDmT~riw~~  264 (311)
T KOG0277|consen  255 YDMTVRIWDP  264 (311)
T ss_pred             ccceEEeccc
Confidence            9999997 44

>KOG0645|consensus

Probab=99.92  E-value=8.1e-24  Score=211.34  Aligned_cols=211  Identities=25%  Similarity=0.446  Sum_probs=179.3

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec-cCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~-~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      ..+.+|.+.+..++|+|-.+.+||+|+.|..|++|+...+....+...+ .+|...|.+++|+|.|++ |++|+.|++  
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~-La~aSFD~t--   84 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRY-LASASFDAT--   84 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcE-EEEeeccce--
Confidence            3455677889999999943789999999999999999854333333333 468999999999999995 999999999  


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc--eeeEEeccC
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK--LKLHSFESH  771 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~--~~~~~~~~h  771 (860)
                                   +.||.-..++ .+.+.++.||...|.|++|+++|.+ ||||++|.+|.||.+....  .....++.|
T Consensus        85 -------------~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~~-LATCSRDKSVWiWe~deddEfec~aVL~~H  149 (312)
T KOG0645|consen   85 -------------VVIWKKEDGE-FECVATLEGHENEVKCVAWSASGNY-LATCSRDKSVWIWEIDEDDEFECIAVLQEH  149 (312)
T ss_pred             -------------EEEeecCCCc-eeEEeeeeccccceeEEEEcCCCCE-EEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence                         8999776554 3778899999999999999999995 9999999999999998443  236778999


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D  851 (860)
                      ...|..+.|+|... +|++++.|++|++|.-..           +....++..+.+|.+.|.+++|++.|.. ++++++|
T Consensus       150 tqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~-----------dddW~c~~tl~g~~~TVW~~~F~~~G~r-l~s~sdD  216 (312)
T KOG0645|consen  150 TQDVKHVIWHPTED-LLFSCSYDNTIKVYRDED-----------DDDWECVQTLDGHENTVWSLAFDNIGSR-LVSCSDD  216 (312)
T ss_pred             cccccEEEEcCCcc-eeEEeccCCeEEEEeecC-----------CCCeeEEEEecCccceEEEEEecCCCce-EEEecCC
Confidence            99999999999887 699999999999998653           2236788999999999999999999985 7799999


Q ss_pred             CeEee
Q psy4578         852 NIMQK  856 (860)
Q Consensus       852 g~IrI  856 (860)
                      ++++|
T Consensus       217 ~tv~I  221 (312)
T KOG0645|consen  217 GTVSI  221 (312)
T ss_pred             cceEe
Confidence            99997

>KOG0286|consensus

Probab=99.92  E-value=8.6e-24  Score=213.06  Aligned_cols=218  Identities=21%  Similarity=0.396  Sum_probs=183.6

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      ..+.+|.++|.++.|++ +.+.+++++.||.+.|||.-+.   .....+.-....|..++|+|.|++ +|+|+-|+.+-+
T Consensus        49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~Tt---nK~haipl~s~WVMtCA~sPSg~~-VAcGGLdN~Csi  123 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTT---NKVHAIPLPSSWVMTCAYSPSGNF-VACGGLDNKCSI  123 (343)
T ss_pred             EEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccc---cceeEEecCceeEEEEEECCCCCe-EEecCcCceeEE
Confidence            45678889999999998 8999999999999999999874   334455556789999999999995 999999998877


Q ss_pred             eccccc--------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC-CCC
Q psy4578         695 VEEEEE--------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP-YSE  741 (860)
Q Consensus       695 ~~~~~~--------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp-~g~  741 (860)
                      +++...                                ++.|..+.+||++++   +.+..+.+|.+.|.+++++| +++
T Consensus       124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g---~~~~~f~GH~gDV~slsl~p~~~n  200 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG---QQTQVFHGHTGDVMSLSLSPSDGN  200 (343)
T ss_pred             EecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc---eEEEEecCCcccEEEEecCCCCCC
Confidence            776532                                246778999999998   78889999999999999999 666


Q ss_pred             cEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCcc
Q psy4578         742 YILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL  821 (860)
Q Consensus       742 ~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~  821 (860)
                       .+++|+.|+..++||+|.+.. ++.|.+|.+.|++++|.|+|.- ++||++|+++++||++......            
T Consensus       201 -tFvSg~cD~~aklWD~R~~~c-~qtF~ghesDINsv~ffP~G~a-fatGSDD~tcRlyDlRaD~~~a------------  265 (343)
T KOG0286|consen  201 -TFVSGGCDKSAKLWDVRSGQC-VQTFEGHESDINSVRFFPSGDA-FATGSDDATCRLYDLRADQELA------------  265 (343)
T ss_pred             -eEEecccccceeeeeccCcce-eEeecccccccceEEEccCCCe-eeecCCCceeEEEeecCCcEEe------------
Confidence             699999999999999999987 9999999999999999999986 8999999999999999854432            


Q ss_pred             EEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         822 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       822 i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++....-..+|++++||..|+. +.+|..|..+.+
T Consensus       266 ~ys~~~~~~gitSv~FS~SGRl-Lfagy~d~~c~v  299 (343)
T KOG0286|consen  266 VYSHDSIICGITSVAFSKSGRL-LFAGYDDFTCNV  299 (343)
T ss_pred             eeccCcccCCceeEEEcccccE-EEeeecCCceeE
Confidence            3333444578999999999995 556666666554

>KOG0291|consensus

Probab=99.92  E-value=1.4e-23  Score=233.52  Aligned_cols=249  Identities=19%  Similarity=0.333  Sum_probs=197.7

Q ss_pred             cccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEE
Q psy4578         596 GTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  675 (860)
Q Consensus       596 Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~  675 (860)
                      |+..+...+.|+-....-+....+|...+++++++| ++.++|+|+.||+|+|||..++   -+..++..|...|+.+.|
T Consensus       325 g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~Sg---fC~vTFteHts~Vt~v~f  400 (893)
T KOG0291|consen  325 GCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSG---FCFVTFTEHTSGVTAVQF  400 (893)
T ss_pred             cCCccceEEEEEeeccceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCc---eEEEEeccCCCceEEEEE
Confidence            444455565555555666777888999999999999 8999999999999999999984   678899999999999999


Q ss_pred             ccCCCeEEEEEeCCCceeeecccccc-----------------------------cCCCcEEEEeCCCCCCCCCeeeecC
Q psy4578         676 NPYSEYILATGSADKTQFEVEEEEEE-----------------------------NYDQKLMIWDTRSHNVSKPSHTVDA  726 (860)
Q Consensus       676 sp~g~~llasgs~Dg~i~~~~~~~~~-----------------------------~~dg~I~iwDl~~~~~~~~~~~~~~  726 (860)
                      +..|+ .+++.+-||+|+.|++....                             ...-.|.+|++.++   +.+-.+.|
T Consensus       401 ~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsG  476 (893)
T KOG0291|consen  401 TARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSG  476 (893)
T ss_pred             EecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcC
Confidence            99998 58999999999999876541                             11225899999998   77778899


Q ss_pred             CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         727 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       727 h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      |.++|.+++|+|.|. +|++||.|.+|++||+-.....+..+. +...+..++|+|+|+. ++.++.||.|.+||.....
T Consensus       477 HEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~e-laVaTldgqItf~d~~~~~  553 (893)
T KOG0291|consen  477 HEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKE-LAVATLDGQITFFDIKEAV  553 (893)
T ss_pred             CCCcceeeEEccccC-eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCe-EEEEEecceEEEEEhhhce
Confidence            999999999999999 699999999999999977644344444 6778999999999997 8999999999999999877


Q ss_pred             cccccccccCC------CCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         807 EEQSTEDAEDG------PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       807 ~~~~~~~~~~~------~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +...++...+-      ...............+.+++++||.+++ +||..+.|.+
T Consensus       554 q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~Il-AgG~sn~iCi  608 (893)
T KOG0291|consen  554 QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCIL-AGGESNSICI  608 (893)
T ss_pred             eeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEE-ecCCcccEEE
Confidence            76555443221      1112222233456799999999999766 5555555443

>KOG0279|consensus

Probab=99.92  E-value=2.8e-23  Score=208.33  Aligned_cols=244  Identities=21%  Similarity=0.339  Sum_probs=187.0

Q ss_pred             ccccceeeeeeecceeecccceeEEEEeeccchh-hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc
Q psy4578         579 QEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRA-QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS  657 (860)
Q Consensus       579 ~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~-~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~  657 (860)
                      ++.+.........|.|.-+......+.+|+...+ ...++.+|...|.+++|++ ++..+++|+.|.+|++||+...   
T Consensus        62 HsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~---  137 (315)
T KOG0279|consen   62 HSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV---  137 (315)
T ss_pred             cceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc---
Confidence            3444444445556666555566667777887774 4566678889999999998 7888999999999999999763   


Q ss_pred             cCeeeccC--CCCCeeEEEEccCC-CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEE
Q psy4578         658 KPSHTVDA--HTAEVNCLSFNPYS-EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCL  734 (860)
Q Consensus       658 ~~~~~~~~--h~~~V~~l~~sp~g-~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl  734 (860)
                       +..+...  +.+.|+|+.|+|.. +-++++++.|++               |++||+++.   +....+.+|++.++.+
T Consensus       138 -ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt---------------vKvWnl~~~---~l~~~~~gh~~~v~t~  198 (315)
T KOG0279|consen  138 -CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT---------------VKVWNLRNC---QLRTTFIGHSGYVNTV  198 (315)
T ss_pred             -EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce---------------EEEEccCCc---chhhccccccccEEEE
Confidence             2223322  37899999999984 446999999999               999999986   6667888999999999


Q ss_pred             EEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc
Q psy4578         735 SFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA  814 (860)
Q Consensus       735 ~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~  814 (860)
                      ++||||. +.++|+.||.+.+||++.++. +..+. |...|.+++|+|+... | ++..+..|+|||+.+..........
T Consensus       199 ~vSpDGs-lcasGgkdg~~~LwdL~~~k~-lysl~-a~~~v~sl~fspnryw-L-~~at~~sIkIwdl~~~~~v~~l~~d  273 (315)
T KOG0279|consen  199 TVSPDGS-LCASGGKDGEAMLWDLNEGKN-LYSLE-AFDIVNSLCFSPNRYW-L-CAATATSIKIWDLESKAVVEELKLD  273 (315)
T ss_pred             EECCCCC-EEecCCCCceEEEEEccCCce-eEecc-CCCeEeeEEecCCcee-E-eeccCCceEEEeccchhhhhhcccc
Confidence            9999999 699999999999999999987 66554 8899999999998854 4 4555667999999987665444322


Q ss_pred             cCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       815 ~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ..++     ..........+++|++||..|+ +|-.|+.|++
T Consensus       274 ~~g~-----s~~~~~~~clslaws~dG~tLf-~g~td~~irv  309 (315)
T KOG0279|consen  274 GIGP-----SSKAGDPICLSLAWSADGQTLF-AGYTDNVIRV  309 (315)
T ss_pred             cccc-----ccccCCcEEEEEEEcCCCcEEE-eeecCCcEEE
Confidence            2222     1222234467899999999755 7888888875

>KOG0305|consensus

Probab=99.92  E-value=7.7e-24  Score=235.27  Aligned_cols=259  Identities=23%  Similarity=0.399  Sum_probs=216.6

Q ss_pred             cccCCCCCcccccceeeeeeecceeecccceeEEEEeeccchhhhhhhhhc-ccceeeeEeeccCCcEEEEEeCCCcEEE
Q psy4578         570 FRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDK-LRLLIDVAWHLLHESLFGSVADDQKLMI  648 (860)
Q Consensus       570 f~~l~a~~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~-~~~V~~v~~sp~~~~~lasgs~DG~I~I  648 (860)
                      ++.+++|...+||++++--+....... ..+...+|+|+...+.+..+... ...|+++.|++ ++.+|++|..+|.|.|
T Consensus       166 ~rvLDaP~l~dDfY~nlldWss~n~la-Valg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~i  243 (484)
T KOG0305|consen  166 YRVLDAPGLQDDFYLNLLDWSSANVLA-VALGQSVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQI  243 (484)
T ss_pred             hhhccCCcccccHhhhHhhcccCCeEE-EEecceEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEE
Confidence            788999999999999887776554432 35667899999999887777765 68899999998 8999999999999999


Q ss_pred             EEcCCCCcccCeeeccC-CCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCC
Q psy4578         649 WDTRSHNVSKPSHTVDA-HTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAH  727 (860)
Q Consensus       649 Wd~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h  727 (860)
                      ||....   +.+..+.+ |...|.+++|+.   .++.+|+.||.               |..+|++..+.  ....+.+|
T Consensus       244 wD~~~~---k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~---------------I~~~dvR~~~~--~~~~~~~H  300 (484)
T KOG0305|consen  244 WDVKEQ---KKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGK---------------ILNHDVRISQH--VVSTLQGH  300 (484)
T ss_pred             Eehhhc---cccccccCCcCceeEEEeccC---ceEEEecCCCc---------------EEEEEEecchh--hhhhhhcc
Confidence            999873   45666777 999999999983   46999999998               99999998743  22248899


Q ss_pred             CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE--CCCcEEEEECCCC
Q psy4578         728 TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKI  805 (860)
Q Consensus       728 ~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs--~Dg~I~iWdl~~~  805 (860)
                      ...|+.+.|++++.+ +|+|+.|+.+.|||...... ...+..|.++|.+++|+|....+||+||  .|++|++||..++
T Consensus       301 ~qeVCgLkws~d~~~-lASGgnDN~~~Iwd~~~~~p-~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g  378 (484)
T KOG0305|consen  301 RQEVCGLKWSPDGNQ-LASGGNDNVVFIWDGLSPEP-KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG  378 (484)
T ss_pred             cceeeeeEECCCCCe-eccCCCccceEeccCCCccc-cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence            999999999999996 99999999999999977665 7888899999999999999888999987  7999999999987


Q ss_pred             CcccccccccC-----------------------------CCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         806 GEEQSTEDAED-----------------------------GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       806 ~~~~~~~~~~~-----------------------------~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .....+.....                             .....+..+.+|...|..++++|||.+ +++|+.|.++++
T Consensus       379 ~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~-i~t~a~DETlrf  457 (484)
T KOG0305|consen  379 ARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGET-IVTGAADETLRF  457 (484)
T ss_pred             cEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCE-EEEecccCcEEe
Confidence            77665443210                             122355566799999999999999996 779999999986

>KOG0284|consensus

Probab=99.92  E-value=1.2e-24  Score=227.53  Aligned_cols=228  Identities=23%  Similarity=0.403  Sum_probs=188.0

Q ss_pred             cceeeeeeecceeecccceeEEEEeeccchhhhhhhh-hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe
Q psy4578         582 LKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLL-DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS  660 (860)
Q Consensus       582 ~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~-~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~  660 (860)
                      +...++.+..|...|.      +-+|+........+. .|.+.|.++.|++ ++..+++|+.+|.|++|+..-.    .+
T Consensus       104 WtPeGRRLltgs~SGE------FtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmn----nV  172 (464)
T KOG0284|consen  104 WTPEGRRLLTGSQSGE------FTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMN----NV  172 (464)
T ss_pred             EcCCCceeEeeccccc------EEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchh----hh
Confidence            3344445555555544      445666555544444 4667899999998 8999999999999999998752    23


Q ss_pred             eeccCC-CCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC
Q psy4578         661 HTVDAH-TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  739 (860)
Q Consensus       661 ~~~~~h-~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~  739 (860)
                      ..+..| ...|++++|+|.+. .|+++++||+               |+|||....   +.-..+.+|.-.|.|++|||.
T Consensus       173 k~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~---------------ikiWdf~~~---kee~vL~GHgwdVksvdWHP~  233 (464)
T KOG0284|consen  173 KIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGT---------------IKIWDFRMP---KEERVLRGHGWDVKSVDWHPT  233 (464)
T ss_pred             HHhhHhhhhhhheeccCCCCc-eeEEecCCCe---------------EEEEeccCC---chhheeccCCCCcceeccCCc
Confidence            444444 48999999999776 5999999999               999999876   444566899999999999998


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCC
Q psy4578         740 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP  819 (860)
Q Consensus       740 g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~  819 (860)
                      .. ++|+||.|+.|++||.+++.+ +.++.+|+..|..+.|+|++++ |+|+|.|..++++|+++.+.            
T Consensus       234 kg-LiasgskDnlVKlWDprSg~c-l~tlh~HKntVl~~~f~~n~N~-Llt~skD~~~kv~DiR~mkE------------  298 (464)
T KOG0284|consen  234 KG-LIASGSKDNLVKLWDPRSGSC-LATLHGHKNTVLAVKFNPNGNW-LLTGSKDQSCKVFDIRTMKE------------  298 (464)
T ss_pred             cc-eeEEccCCceeEeecCCCcch-hhhhhhccceEEEEEEcCCCCe-eEEccCCceEEEEehhHhHH------------
Confidence            87 699999999999999999998 8889999999999999999975 89999999999999997443            


Q ss_pred             ccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         820 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       820 ~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                        ++.+.+|...|+++.|+|-..-|+++|+.||.|..
T Consensus       299 --l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh  333 (464)
T KOG0284|consen  299 --LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH  333 (464)
T ss_pred             --HHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence              45667899999999999988889999999998764

>KOG0279|consensus

Probab=99.92  E-value=1.8e-23  Score=209.67  Aligned_cols=205  Identities=21%  Similarity=0.390  Sum_probs=177.8

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCC--CcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH--NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~--~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      .+.+|.+.|+.++..+.+...+++++.|.++.+|++...  +.+.+++.+.||...|..+..+++|++ +++++.|++  
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~-alS~swD~~--   86 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNF-ALSASWDGT--   86 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCce-EEeccccce--
Confidence            345778899999999988899999999999999999753  345678889999999999999999996 899999999  


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec-cCC
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE-SHK  772 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~-~h~  772 (860)
                                   +++||+.++   +....+.+|+..|.+++|+|+++. +++|+.|.+|++|++-+... ..... .+.
T Consensus        87 -------------lrlWDl~~g---~~t~~f~GH~~dVlsva~s~dn~q-ivSGSrDkTiklwnt~g~ck-~t~~~~~~~  148 (315)
T KOG0279|consen   87 -------------LRLWDLATG---ESTRRFVGHTKDVLSVAFSTDNRQ-IVSGSRDKTIKLWNTLGVCK-YTIHEDSHR  148 (315)
T ss_pred             -------------EEEEEecCC---cEEEEEEecCCceEEEEecCCCce-eecCCCcceeeeeeecccEE-EEEecCCCc
Confidence                         999999997   777889999999999999999995 99999999999999987664 22222 338


Q ss_pred             CceEEEEEcCCC-CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578         773 DEIFQVQWSPHN-ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       773 ~~V~~l~fsp~g-~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D  851 (860)
                      +.|+|++|+|+. ..+++++|.|+++++||+++.              ++...+.||.+.++.+++||||. +.++|+.|
T Consensus       149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~--------------~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkd  213 (315)
T KOG0279|consen  149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC--------------QLRTTFIGHSGYVNTVTVSPDGS-LCASGGKD  213 (315)
T ss_pred             CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc--------------chhhccccccccEEEEEECCCCC-EEecCCCC
Confidence            899999999984 446999999999999999983              44556678999999999999999 79999999


Q ss_pred             CeEee
Q psy4578         852 NIMQK  856 (860)
Q Consensus       852 g~IrI  856 (860)
                      |.+-+
T Consensus       214 g~~~L  218 (315)
T KOG0279|consen  214 GEAML  218 (315)
T ss_pred             ceEEE
Confidence            98753

>KOG0277|consensus

Probab=99.91  E-value=5.2e-24  Score=210.73  Aligned_cols=214  Identities=26%  Similarity=0.507  Sum_probs=189.5

Q ss_pred             cchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeC
Q psy4578         609 KTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA  688 (860)
Q Consensus       609 ~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~  688 (860)
                      .....+..+..|...|.++.|++..+..++++|.||+|++|+...   ...++++.+|...|....|+|....++++++.
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r---~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg  168 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR---PNSVQTFNGHNSCIYQAAFSPHIPNLFASASG  168 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC---CcceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence            344556667788899999999998889999999999999999976   46688999999999999999999899999999


Q ss_pred             CCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe
Q psy4578         689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF  768 (860)
Q Consensus       689 Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~  768 (860)
                      ||+               +++||++...  +. ..+..|...|.|+.|+.-..++++||+.|+.|++||++..+.++..+
T Consensus       169 d~~---------------l~lwdvr~~g--k~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL  230 (311)
T KOG0277|consen  169 DGT---------------LRLWDVRSPG--KF-MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL  230 (311)
T ss_pred             Cce---------------EEEEEecCCC--ce-eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee
Confidence            999               9999999862  33 34888999999999999988999999999999999999999999999


Q ss_pred             ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578         769 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       769 ~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                      .+|.-+|+.+.|||....+|++|+.|-+++|||......             .+.....|+.-|.++.||+-....+|++
T Consensus       231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-------------~~e~~~~HtEFv~g~Dws~~~~~~vAs~  297 (311)
T KOG0277|consen  231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-------------AIETVDHHTEFVCGLDWSLFDPGQVAST  297 (311)
T ss_pred             cCCceEEEEEecCcchhhHhhhccccceEEecccccchh-------------hhhhhhccceEEeccccccccCceeeec
Confidence            999999999999999988999999999999999886432             3334456899999999999776689999


Q ss_pred             eCCCeEee
Q psy4578         849 SEDNIMQK  856 (860)
Q Consensus       849 s~Dg~IrI  856 (860)
                      +.|+.+.|
T Consensus       298 gWDe~l~V  305 (311)
T KOG0277|consen  298 GWDELLYV  305 (311)
T ss_pred             ccccceee
Confidence            99999876

>KOG0645|consensus

Probab=99.91  E-value=1.7e-22  Score=201.90  Aligned_cols=217  Identities=22%  Similarity=0.422  Sum_probs=175.4

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      +|...|.+++|+| .+++|++||.|+++.||.-..++ .+++.++.||...|.|++|+++|++ ||+++.|.+       
T Consensus        59 ~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~~-LATCSRDKS-------  128 (312)
T KOG0645|consen   59 GHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGNY-LATCSRDKS-------  128 (312)
T ss_pred             cchheeeeeeecC-CCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCCE-EEEeeCCCe-------
Confidence            5678899999999 78899999999999999987655 4678899999999999999999996 999999999       


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC-C--CceeeEEeccCCCce
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-N--LKLKLHSFESHKDEI  775 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~-~--~~~~~~~~~~h~~~V  775 (860)
                              |-||.+..+........+++|+..|..+.|||... +|+++|.|++|++|+-. .  ..+ +.++.+|.+.|
T Consensus       129 --------VWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c-~~tl~g~~~TV  198 (312)
T KOG0645|consen  129 --------VWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWEC-VQTLDGHENTV  198 (312)
T ss_pred             --------EEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeE-EEEecCccceE
Confidence                    88888876666677788899999999999999887 79999999999999876 2  233 78899999999


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEECCCCCc------cc--ccc----ccc------------C----CCCccE-EEec
Q psy4578         776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGE------EQ--STE----DAE------------D----GPPELL-FIHG  826 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~------~~--~~~----~~~------------~----~~~~~i-~~~~  826 (860)
                      ++++|++.|.. |++|+.|++++||-..+.-.      ..  .+.    ...            .    +...++ ....
T Consensus       199 W~~~F~~~G~r-l~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~  277 (312)
T KOG0645|consen  199 WSLAFDNIGSR-LVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEG  277 (312)
T ss_pred             EEEEecCCCce-EEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhc
Confidence            99999999976 89999999999998443110      00  000    000            0    000111 1224


Q ss_pred             CccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         827 GHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       827 ~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .|...|++++|+|.+..++++|++||++++
T Consensus       278 aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~  307 (312)
T KOG0645|consen  278 AHEVDVNSVQWNPKVSNRLASGGDDGIVNF  307 (312)
T ss_pred             ccccccceEEEcCCCCCceeecCCCceEEE
Confidence            688899999999976667999999999996

>KOG0285|consensus

Probab=99.91  E-value=3e-23  Score=213.60  Aligned_cols=202  Identities=24%  Similarity=0.433  Sum_probs=179.6

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      -+.+|.+-|.|+++.| ++.+|++|+.|++|+|||+.++   +...++.+|-..|..+++++-..| +.+++.|+.    
T Consensus       146 Vi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpY-lFs~gedk~----  216 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPY-LFSAGEDKQ----  216 (460)
T ss_pred             hhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCce-EEEecCCCe----
Confidence            3456778899999999 7999999999999999999995   557788999999999999999998 778888988    


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCce
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEI  775 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V  775 (860)
                                 |+.||+...   +.+..+.||-..|.|++.+|.-. +++||+.|.++++||+|+... +..+.+|.++|
T Consensus       217 -----------VKCwDLe~n---kvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V  280 (460)
T KOG0285|consen  217 -----------VKCWDLEYN---KVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPV  280 (460)
T ss_pred             -----------eEEEechhh---hhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccce-EEEecCCCCcc
Confidence                       999999987   67788899999999999999888 699999999999999999887 99999999999


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      .++.+.|..+. ++||+.|++|++||++.++              ....+..|...|.+++.+|... ++|+++.|.+-+
T Consensus       281 ~~V~~~~~dpq-vit~S~D~tvrlWDl~agk--------------t~~tlt~hkksvral~lhP~e~-~fASas~dnik~  344 (460)
T KOG0285|consen  281 ASVMCQPTDPQ-VITGSHDSTVRLWDLRAGK--------------TMITLTHHKKSVRALCLHPKEN-LFASASPDNIKQ  344 (460)
T ss_pred             eeEEeecCCCc-eEEecCCceEEEeeeccCc--------------eeEeeecccceeeEEecCCchh-hhhccCCcccee
Confidence            99999998886 8899999999999999843              4556667889999999999877 688999988766


Q ss_pred             ecc
Q psy4578         856 KPF  858 (860)
Q Consensus       856 I~f  858 (860)
                      +.+
T Consensus       345 w~~  347 (460)
T KOG0285|consen  345 WKL  347 (460)
T ss_pred             ccC
Confidence            543

>KOG0295|consensus

Probab=99.90  E-value=1.7e-22  Score=209.00  Aligned_cols=236  Identities=21%  Similarity=0.343  Sum_probs=196.2

Q ss_pred             ccceeeeeeecceeecccceeEEEEeeccch--hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCccc
Q psy4578         581 DLKLFLNFFKQGYFKGTHHIEEVMYLENKTR--AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSK  658 (860)
Q Consensus       581 D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~--~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~  658 (860)
                      +-...+.+-+.|-+..+....-...+|+...  .++....+|...|.+++|-| .++++++++.|.+|+.|++.++   .
T Consensus       151 ~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg---~  226 (406)
T KOG0295|consen  151 DSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTG---Y  226 (406)
T ss_pred             cceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccc---e
Confidence            3345555555555543333332255565544  45666778888999999999 5799999999999999999994   6


Q ss_pred             CeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC
Q psy4578         659 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  738 (860)
Q Consensus       659 ~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp  738 (860)
                      ++.++.+|...|..+..+.||. ++++|+.|.+               +++|-+.++   .....+..|.-.|-|++|.|
T Consensus       227 cv~t~~~h~ewvr~v~v~~DGt-i~As~s~dqt---------------l~vW~~~t~---~~k~~lR~hEh~vEci~wap  287 (406)
T KOG0295|consen  227 CVKTFPGHSEWVRMVRVNQDGT-IIASCSNDQT---------------LRVWVVATK---QCKAELREHEHPVECIAWAP  287 (406)
T ss_pred             eEEeccCchHhEEEEEecCCee-EEEecCCCce---------------EEEEEeccc---hhhhhhhccccceEEEEecc
Confidence            6889999999999999999998 7999999998               999999887   44556778999999999977


Q ss_pred             C--------------CCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         739 Y--------------SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       739 ~--------------g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      .              +..++.+|+.|++|++||+.++.+ +.++.+|.++|..++|+|.|++ |+++.+|+++++||+++
T Consensus       288 ~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c-L~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  288 ESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC-LFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKN  365 (406)
T ss_pred             cccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE-EEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEecc
Confidence            3              224699999999999999999998 8999999999999999999997 88999999999999999


Q ss_pred             CCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         805 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       805 ~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ..              +......|..-|++++|+.+..+ ++||+-|..+++
T Consensus       366 ~~--------------cmk~~~ah~hfvt~lDfh~~~p~-VvTGsVdqt~Kv  402 (406)
T KOG0295|consen  366 LQ--------------CMKTLEAHEHFVTSLDFHKTAPY-VVTGSVDQTVKV  402 (406)
T ss_pred             ce--------------eeeccCCCcceeEEEecCCCCce-EEeccccceeee
Confidence            44              45556679999999999999995 779999999887

>KOG0319|consensus

Probab=99.90  E-value=1.2e-22  Score=226.40  Aligned_cols=242  Identities=25%  Similarity=0.403  Sum_probs=199.3

Q ss_pred             cccccceeeeeeecceeecccceeEEEEeecc----ch-hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcC
Q psy4578         578 TQEDLKLFLNFFKQGYFKGTHHIEEVMYLENK----TR-AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTR  652 (860)
Q Consensus       578 ~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~----~~-~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~  652 (860)
                      .+++..+++.-...|.+..+..-...+.+|..    .. ..+.+..+|...|.+++++..+..+|+++|.|+++++|++.
T Consensus       363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~  442 (775)
T KOG0319|consen  363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP  442 (775)
T ss_pred             CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence            56667777776667755555444445555522    22 22445567889999999998788899999999999999997


Q ss_pred             CCCccc--Ce----eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC
Q psy4578         653 SHNVSK--PS----HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA  726 (860)
Q Consensus       653 ~~~~~~--~~----~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~  726 (860)
                      ..+...  ..    .+...|...|+|++.+|+.. +++|||.|.+               .++|++...   ....++.|
T Consensus       443 ~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDkt---------------aKiW~le~~---~l~~vLsG  503 (775)
T KOG0319|consen  443 KSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKT---------------AKIWDLEQL---RLLGVLSG  503 (775)
T ss_pred             CcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccc---------------eeeecccCc---eEEEEeeC
Confidence            521111  11    23457999999999999877 8999999999               999999955   77889999


Q ss_pred             CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         727 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       727 h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      |+..|.|+.|+|... +++|+|.|++|+||.+.+..+ +.++.||...|..+.|-.+|.+ |++|+.||-|++|+++++.
T Consensus       504 H~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~fSC-lkT~eGH~~aVlra~F~~~~~q-liS~~adGliKlWnikt~e  580 (775)
T KOG0319|consen  504 HTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTFSC-LKTFEGHTSAVLRASFIRNGKQ-LISAGADGLIKLWNIKTNE  580 (775)
T ss_pred             CccceEEEEeccccc-eeEeccCCceEEEEEecccee-eeeecCccceeEeeeeeeCCcE-EEeccCCCcEEEEeccchh
Confidence            999999999999888 699999999999999999998 9999999999999999999986 8899999999999999955


Q ss_pred             cccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         807 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       807 ~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +              ..++.+|...|++++-++.+. +++||+.||.|.+
T Consensus       581 C--------------~~tlD~H~DrvWaL~~~~~~~-~~~tgg~Dg~i~~  615 (775)
T KOG0319|consen  581 C--------------EMTLDAHNDRVWALSVSPLLD-MFVTGGGDGRIIF  615 (775)
T ss_pred             h--------------hhhhhhccceeEEEeecCccc-eeEecCCCeEEEE
Confidence            5              455668999999999999999 6889999988764

>KOG0263|consensus

Probab=99.90  E-value=6.5e-23  Score=231.05  Aligned_cols=219  Identities=26%  Similarity=0.502  Sum_probs=182.6

Q ss_pred             EEeeccc-hhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         604 MYLENKT-RAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       604 l~l~n~~-~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      +.+|... ...+....+|..+|+++.|+| .|.+||||+.|++.++|....   ..+.+.+.+|-+.|.|+.|+|+..| 
T Consensus       475 vRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~---~~PlRifaghlsDV~cv~FHPNs~Y-  549 (707)
T KOG0263|consen  475 VRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDH---NKPLRIFAGHLSDVDCVSFHPNSNY-  549 (707)
T ss_pred             eeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeeccc---CCchhhhcccccccceEEECCcccc-
Confidence            3344443 344444557889999999998 799999999999999999987   5778889999999999999999997 


Q ss_pred             EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc
Q psy4578         683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK  762 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~  762 (860)
                      +++||.|.+               |++||+.++   ..++.|.||.++|.+++|+|+|.+ |++|+.||.|.+||+.++.
T Consensus       550 ~aTGSsD~t---------------VRlWDv~~G---~~VRiF~GH~~~V~al~~Sp~Gr~-LaSg~ed~~I~iWDl~~~~  610 (707)
T KOG0263|consen  550 VATGSSDRT---------------VRLWDVSTG---NSVRIFTGHKGPVTALAFSPCGRY-LASGDEDGLIKIWDLANGS  610 (707)
T ss_pred             cccCCCCce---------------EEEEEcCCC---cEEEEecCCCCceEEEEEcCCCce-EeecccCCcEEEEEcCCCc
Confidence            999999999               999999998   678889999999999999999997 9999999999999999998


Q ss_pred             eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc----------cccccCCCCccEEEecCccCce
Q psy4578         763 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS----------TEDAEDGPPELLFIHGGHTAKI  832 (860)
Q Consensus       763 ~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~----------~~~~~~~~~~~i~~~~~h~~~I  832 (860)
                      . +..+.+|.+.|.++.|+.+|. +|++||.|++|++||+........          .....+....++..+.....+|
T Consensus       611 ~-v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv  688 (707)
T KOG0263|consen  611 L-VKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPV  688 (707)
T ss_pred             c-hhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceE
Confidence            7 888999999999999999998 699999999999999876443310          0011123345667777777899


Q ss_pred             EEEEEccCCCeEEEEEe
Q psy4578         833 SDFSWNPNEPWVICSVS  849 (860)
Q Consensus       833 ~~i~~spdg~~Llasgs  849 (860)
                      .++.|....- +++.|.
T Consensus       689 ~~l~FtrrNl-~L~~g~  704 (707)
T KOG0263|consen  689 VGLHFTRRNL-LLAVGP  704 (707)
T ss_pred             EEEEEeccce-eEEecc
Confidence            9999988763 565553

>PTZ00421 coronin; Provisional

Probab=99.90  E-value=1.3e-21  Score=224.93  Aligned_cols=207  Identities=21%  Similarity=0.387  Sum_probs=165.6

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc----ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV----SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ  692 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~----~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i  692 (860)
                      +.+|.+.|.+++|+|.++.+|++|+.||+|++||+.++..    ..++..+.+|...|.+++|+|++..++++|+.|++ 
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt-  149 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV-  149 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE-
Confidence            5678899999999997788999999999999999976421    23566788999999999999987667999999999 


Q ss_pred             eeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC
Q psy4578         693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK  772 (860)
Q Consensus       693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~  772 (860)
                                    |++||+.++   ..+..+.+|...|.+++|+|+|. +|++|+.||.|++||++++.. +..+.+|.
T Consensus       150 --------------VrIWDl~tg---~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~-v~tl~~H~  210 (493)
T PTZ00421        150 --------------VNVWDVERG---KAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTI-VSSVEAHA  210 (493)
T ss_pred             --------------EEEEECCCC---eEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcE-EEEEecCC
Confidence                          999999986   56677888999999999999998 599999999999999999886 77788887


Q ss_pred             Cc-eEEEEEcCCCCCEEEEE---ECCCcEEEEECCCCCcccccccccCCCCccEEEec-CccCceEEEEEccCCCeEEEE
Q psy4578         773 DE-IFQVQWSPHNETILASS---GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWVICS  847 (860)
Q Consensus       773 ~~-V~~l~fsp~g~~lL~tg---s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~-~h~~~I~~i~~spdg~~Llas  847 (860)
                      +. +..+.|.+++..++.+|   +.|+.|++||+++....             ..... .+...+....|++++..++++
T Consensus       211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p-------------~~~~~~d~~~~~~~~~~d~d~~~L~lg  277 (493)
T PTZ00421        211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP-------------YSTVDLDQSSALFIPFFDEDTNLLYIG  277 (493)
T ss_pred             CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc-------------eeEeccCCCCceEEEEEcCCCCEEEEE
Confidence            64 45678999887644333   24799999999874321             11111 223456667899999976655


Q ss_pred             EeCCCeEee
Q psy4578         848 VSEDNIMQK  856 (860)
Q Consensus       848 gs~Dg~IrI  856 (860)
                      |..|+.|++
T Consensus       278 gkgDg~Iri  286 (493)
T PTZ00421        278 SKGEGNIRC  286 (493)
T ss_pred             EeCCCeEEE
Confidence            557998875

>KOG0276|consensus

Probab=99.90  E-value=8.6e-23  Score=222.99  Aligned_cols=221  Identities=22%  Similarity=0.362  Sum_probs=192.6

Q ss_pred             cceeecccceeEEEEeeccchhhhhhhhh-cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCC
Q psy4578         591 QGYFKGTHHIEEVMYLENKTRAQICQLLD-KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAE  669 (860)
Q Consensus       591 ~G~~~Gs~~l~~il~l~n~~~~~l~~l~~-~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~  669 (860)
                      .+.++|.      +.+||-.+....+.+. ..-+|.++.|-. ..+.+++|+.|+.|+||+.++   ...+..+..|..-
T Consensus        30 a~LynG~------V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt---~ekV~~FeAH~Dy   99 (794)
T KOG0276|consen   30 AALYNGD------VQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNT---GEKVKTFEAHSDY   99 (794)
T ss_pred             EeeecCe------eEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEeccc---ceeeEEeeccccc
Confidence            4555665      4456665655555444 456899999997 788999999999999999999   4668899999999


Q ss_pred             eeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC
Q psy4578         670 VNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA  749 (860)
Q Consensus       670 V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~  749 (860)
                      |.|++.+|..++ ++++++|-+               |++||-+..  +....++.||+..|.+++|+|.....+|+|+-
T Consensus       100 IR~iavHPt~P~-vLtsSDDm~---------------iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen  100 IRSIAVHPTLPY-VLTSSDDMT---------------IKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             eeeeeecCCCCe-EEecCCccE---------------EEEeeccCc--eeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence            999999999997 889999998               999999875  46778999999999999999988878999999


Q ss_pred             CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCC--CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecC
Q psy4578         750 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG  827 (860)
Q Consensus       750 Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g--~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~  827 (860)
                      |++|++|.+.+... ..++.+|...|+|+.+-+-|  ++ |+||++|.+|+|||.++              ..++.++.|
T Consensus       162 DrTVKVWslgs~~~-nfTl~gHekGVN~Vdyy~~gdkpy-lIsgaDD~tiKvWDyQt--------------k~CV~TLeG  225 (794)
T KOG0276|consen  162 DRTVKVWSLGSPHP-NFTLEGHEKGVNCVDYYTGGDKPY-LISGADDLTIKVWDYQT--------------KSCVQTLEG  225 (794)
T ss_pred             cccEEEEEcCCCCC-ceeeeccccCcceEEeccCCCcce-EEecCCCceEEEeecch--------------HHHHHHhhc
Confidence            99999999998876 88899999999999998755  55 88999999999999998              455677789


Q ss_pred             ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         828 HTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       828 h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |...|..++|+|.-+ ++++||+||++||
T Consensus       226 Ht~Nvs~v~fhp~lp-iiisgsEDGTvri  253 (794)
T KOG0276|consen  226 HTNNVSFVFFHPELP-IIISGSEDGTVRI  253 (794)
T ss_pred             ccccceEEEecCCCc-EEEEecCCccEEE
Confidence            999999999999999 7889999999997

>KOG0315|consensus

Probab=99.90  E-value=3.8e-22  Score=196.98  Aligned_cols=232  Identities=17%  Similarity=0.330  Sum_probs=191.4

Q ss_pred             EEEeeccchhhhhhhhhcc-cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQICQLLDKL-RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~-~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .+.+|....+....+++|. +.|+.++..| ++..||+++. ..||+||++++.. .++.++.+|...|+++.|..+|+.
T Consensus        21 TIRfWqa~tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np-~Pv~t~e~h~kNVtaVgF~~dgrW   97 (311)
T KOG0315|consen   21 TIRFWQALTGICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNP-NPVATFEGHTKNVTAVGFQCDGRW   97 (311)
T ss_pred             eeeeeehhcCeEEEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCC-CceeEEeccCCceEEEEEeecCeE
Confidence            4556677777777777776 5699999998 6777777765 6899999998754 588999999999999999999996


Q ss_pred             EEEEEeCCCceeeeccccc--------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEE
Q psy4578         682 ILATGSADKTQFEVEEEEE--------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS  735 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~--------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~  735 (860)
                       +++|+.||++.+|+++..                          +..+|.|++||+........+  +......|.++.
T Consensus        98 -MyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l--iPe~~~~i~sl~  174 (311)
T KOG0315|consen   98 -MYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL--IPEDDTSIQSLT  174 (311)
T ss_pred             -EEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc--CCCCCcceeeEE
Confidence             999999999999988753                          356889999999876332222  223446799999


Q ss_pred             EcCCCCcEEEEeeCCCcEEEEeCCCCc-----eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc
Q psy4578         736 FNPYSEYILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  810 (860)
Q Consensus       736 ~sp~g~~llasgs~Dg~I~IWDl~~~~-----~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~  810 (860)
                      ..|+|.. ++.+...|.+++|++-+..     .++..++.|.+.+..+.+||++++ |++||.|.+++||+....     
T Consensus       175 v~~dgsm-l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~-----  247 (311)
T KOG0315|consen  175 VMPDGSM-LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY-LATCSSDKTVKIWNTDDF-----  247 (311)
T ss_pred             EcCCCcE-EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE-EEeecCCceEEEEecCCc-----
Confidence            9999995 8888899999999987543     257778999999999999999996 999999999999999874     


Q ss_pred             cccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         811 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       811 ~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                              ...-..+.+|...+++.+||.||.| +++++.|+.+|+
T Consensus       248 --------~kle~~l~gh~rWvWdc~FS~dg~Y-lvTassd~~~rl  284 (311)
T KOG0315|consen  248 --------FKLELVLTGHQRWVWDCAFSADGEY-LVTASSDHTARL  284 (311)
T ss_pred             --------eeeEEEeecCCceEEeeeeccCccE-EEecCCCCceee
Confidence                    1234556789999999999999997 669999999885

>KOG0265|consensus

Probab=99.90  E-value=5.8e-22  Score=200.73  Aligned_cols=249  Identities=23%  Similarity=0.402  Sum_probs=204.3

Q ss_pred             eeeeeeecceeecccceeEEEEeecc--chhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCee
Q psy4578         584 LFLNFFKQGYFKGTHHIEEVMYLENK--TRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSH  661 (860)
Q Consensus       584 l~~~ll~~G~~~Gs~~l~~il~l~n~--~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~  661 (860)
                      ....+...|.+..+++....+++|+.  .......+.+|.+.|..+.|.+ +++.+++++.|.+++.||++++   +...
T Consensus        51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~tG---~~~r  126 (338)
T KOG0265|consen   51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAETG---KRIR  126 (338)
T ss_pred             EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEecccc---eeee
Confidence            33444445555555555556666763  3334455668999999999998 8999999999999999999995   5677


Q ss_pred             eccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc--------------------------ccCCCcEEEEeCCCC
Q psy4578         662 TVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE--------------------------ENYDQKLMIWDTRSH  715 (860)
Q Consensus       662 ~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~--------------------------~~~dg~I~iwDl~~~  715 (860)
                      ..++|...|+++.-+.-|..++.+|+.||++.+|+.+..                          +.-|+.|++||++..
T Consensus       127 k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~  206 (338)
T KOG0265|consen  127 KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN  206 (338)
T ss_pred             hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccC
Confidence            888999999999977778899999999999999998832                          345889999999987


Q ss_pred             CCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc---eeeEEeccCCC----ceEEEEEcCCCCCEE
Q psy4578         716 NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK---LKLHSFESHKD----EIFQVQWSPHNETIL  788 (860)
Q Consensus       716 ~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~---~~~~~~~~h~~----~V~~l~fsp~g~~lL  788 (860)
                         ....++.||...|+.+..+|+|.+ +.+-+.|.++++||++...   ..+..+.+|..    ....++|+|+++. +
T Consensus       207 ---d~~~~lsGh~DtIt~lsls~~gs~-llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~-i  281 (338)
T KOG0265|consen  207 ---DGLYTLSGHADTITGLSLSRYGSF-LLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK-I  281 (338)
T ss_pred             ---cceEEeecccCceeeEEeccCCCc-cccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc-c
Confidence               677889999999999999999997 7799999999999998543   23566666543    3456899999986 7


Q ss_pred             EEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         789 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       789 ~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .+|+.|..+++||...              ..+++.+.||.+.|.+++|+|..+ ++.+++.|.+|.+
T Consensus       282 ~ags~dr~vyvwd~~~--------------r~~lyklpGh~gsvn~~~Fhp~e~-iils~~sdk~i~l  334 (338)
T KOG0265|consen  282 TAGSADRFVYVWDTTS--------------RRILYKLPGHYGSVNEVDFHPTEP-IILSCSSDKTIYL  334 (338)
T ss_pred             ccccccceEEEeeccc--------------ccEEEEcCCcceeEEEeeecCCCc-EEEEeccCceeEe
Confidence            8889999999999887              567889999999999999999999 5779999988754

>PTZ00420 coronin; Provisional

Probab=99.89  E-value=2.8e-21  Score=223.24  Aligned_cols=236  Identities=16%  Similarity=0.299  Sum_probs=169.4

Q ss_pred             eeeecceeecccceeEEEEeeccchh-hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-----ccCe
Q psy4578         587 NFFKQGYFKGTHHIEEVMYLENKTRA-QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-----SKPS  660 (860)
Q Consensus       587 ~ll~~G~~~Gs~~l~~il~l~n~~~~-~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-----~~~~  660 (860)
                      .+++.....++++...++.+|+..+. .+..+.+|.+.|.+++|+|.++.+|++|+.||+|+|||+.++..     ..++
T Consensus        39 ~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~  118 (568)
T PTZ00420         39 GFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQ  118 (568)
T ss_pred             CeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccce
Confidence            34443333223334445556654333 34445677889999999996688999999999999999976421     1234


Q ss_pred             eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCC
Q psy4578         661 HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS  740 (860)
Q Consensus       661 ~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g  740 (860)
                      ..+.+|...|.+++|+|++.+++++|+.|++               |++||++++   .....+. |...|.+++|+|+|
T Consensus       119 ~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt---------------IrIWDl~tg---~~~~~i~-~~~~V~SlswspdG  179 (568)
T PTZ00420        119 CILKGHKKKISIIDWNPMNYYIMCSSGFDSF---------------VNIWDIENE---KRAFQIN-MPKKLSSLKWNIKG  179 (568)
T ss_pred             EEeecCCCcEEEEEECCCCCeEEEEEeCCCe---------------EEEEECCCC---cEEEEEe-cCCcEEEEEECCCC
Confidence            5678899999999999999888899999999               999999987   3344444 56789999999999


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEE-----EEEcCCCCCEEEEEECC----CcEEEEECCCCCccccc
Q psy4578         741 EYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ-----VQWSPHNETILASSGTD----RRLHVWDLSKIGEEQST  811 (860)
Q Consensus       741 ~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~-----l~fsp~g~~lL~tgs~D----g~I~iWdl~~~~~~~~~  811 (860)
                      . +|++++.|+.|+|||++++.. +..+.+|.+.+.+     ..|++++.+ ++++|.|    +.|++||++.....   
T Consensus       180 ~-lLat~s~D~~IrIwD~Rsg~~-i~tl~gH~g~~~s~~v~~~~fs~d~~~-IlTtG~d~~~~R~VkLWDlr~~~~p---  253 (568)
T PTZ00420        180 N-LLSGTCVGKHMHIIDPRKQEI-ASSFHIHDGGKNTKNIWIDGLGGDDNY-ILSTGFSKNNMREMKLWDLKNTTSA---  253 (568)
T ss_pred             C-EEEEEecCCEEEEEECCCCcE-EEEEecccCCceeEEEEeeeEcCCCCE-EEEEEcCCCCccEEEEEECCCCCCc---
Confidence            9 588999999999999999886 7788899876543     334578876 6676655    37999999963321   


Q ss_pred             ccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         812 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       812 ~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                              .....+..+.+.+......++|. ++++|+.|+.|++
T Consensus       254 --------l~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~  289 (568)
T PTZ00420        254 --------LVTMSIDNASAPLIPHYDESTGL-IYLIGKGDGNCRY  289 (568)
T ss_pred             --------eEEEEecCCccceEEeeeCCCCC-EEEEEECCCeEEE
Confidence                    11122333334333333344455 6889999999986

>KOG0295|consensus

Probab=99.89  E-value=6.5e-22  Score=204.82  Aligned_cols=224  Identities=22%  Similarity=0.379  Sum_probs=196.8

Q ss_pred             chhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCC
Q psy4578         610 TRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD  689 (860)
Q Consensus       610 ~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~D  689 (860)
                      .......+.++..+|+.+-|+| +..++++++.|++|++||..+++   ....+++|...+.+|+|+..|.+ +++++.|
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~---~e~~LrGHt~sv~di~~~a~Gk~-l~tcSsD  171 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGE---LERSLRGHTDSVFDISFDASGKY-LATCSSD  171 (406)
T ss_pred             CCCchhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchh---hhhhhhccccceeEEEEecCccE-EEecCCc
Confidence            3344556677889999999999 78889999999999999999964   47888999999999999999985 9999999


Q ss_pred             Cceeeeccccc----------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCC
Q psy4578         690 KTQFEVEEEEE----------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  741 (860)
Q Consensus       690 g~i~~~~~~~~----------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~  741 (860)
                      -.+..|+.+..                            .+.|..|+.|++.++   ..+.++.+|...|..++.+.||.
T Consensus       172 l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg---~cv~t~~~h~ewvr~v~v~~DGt  248 (406)
T KOG0295|consen  172 LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG---YCVKTFPGHSEWVRMVRVNQDGT  248 (406)
T ss_pred             cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc---eeEEeccCchHhEEEEEecCCee
Confidence            98888887652                            356889999999998   77889999999999999999999


Q ss_pred             cEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCC--------------CCCEEEEEECCCcEEEEECCCCCc
Q psy4578         742 YILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH--------------NETILASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       742 ~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~--------------g~~lL~tgs~Dg~I~iWdl~~~~~  807 (860)
                       ++|+|+.|.++++|-+.+..+ ...+..|..+|.+++|.|.              +..++.+++.|++|++||+.+   
T Consensus       249 -i~As~s~dqtl~vW~~~t~~~-k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t---  323 (406)
T KOG0295|consen  249 -IIASCSNDQTLRVWVVATKQC-KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST---  323 (406)
T ss_pred             -EEEecCCCceEEEEEeccchh-hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC---
Confidence             799999999999999999876 6678899999999999874              224699999999999999998   


Q ss_pred             ccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee-cc
Q psy4578         808 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK-PF  858 (860)
Q Consensus       808 ~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI-~f  858 (860)
                                 +.++.++.+|...|.+++|+|.|+| ++++.+|++++| +|
T Consensus       324 -----------g~cL~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl  363 (406)
T KOG0295|consen  324 -----------GMCLFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDL  363 (406)
T ss_pred             -----------CeEEEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEe
Confidence                       5678899999999999999999997 669999999997 44

>KOG0266|consensus

Probab=99.89  E-value=1.7e-21  Score=224.25  Aligned_cols=229  Identities=26%  Similarity=0.397  Sum_probs=181.9

Q ss_pred             eecceeecccceeEEEEeeccchhh---hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC
Q psy4578         589 FKQGYFKGTHHIEEVMYLENKTRAQ---ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA  665 (860)
Q Consensus       589 l~~G~~~Gs~~l~~il~l~n~~~~~---l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~  665 (860)
                      ...|.+.........+..|+.....   ...+.+|...|.+++|+| ++.++++|+.|++|+|||+...  ...+.++.+
T Consensus       168 s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~--~~~~~~l~g  244 (456)
T KOG0266|consen  168 SPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDD--GRNLKTLKG  244 (456)
T ss_pred             cCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCC--CeEEEEecC
Confidence            3334443333333444445443333   444467888999999999 7889999999999999999442  466788999


Q ss_pred             CCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEE
Q psy4578         666 HTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA  745 (860)
Q Consensus       666 h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~lla  745 (860)
                      |...|++++|+|+|+ ++++|+.|++               |++||++++   .....+.+|...|++++|++++.. ++
T Consensus       245 H~~~v~~~~f~p~g~-~i~Sgs~D~t---------------vriWd~~~~---~~~~~l~~hs~~is~~~f~~d~~~-l~  304 (456)
T KOG0266|consen  245 HSTYVTSVAFSPDGN-LLVSGSDDGT---------------VRIWDVRTG---ECVRKLKGHSDGISGLAFSPDGNL-LV  304 (456)
T ss_pred             CCCceEEEEecCCCC-EEEEecCCCc---------------EEEEeccCC---eEEEeeeccCCceEEEEECCCCCE-EE
Confidence            999999999999994 7999999999               999999996   778899999999999999999995 88


Q ss_pred             EeeCCCcEEEEeCCCCcee-eEEeccCCCc--eEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccE
Q psy4578         746 TGSADKTVALWDLRNLKLK-LHSFESHKDE--IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL  822 (860)
Q Consensus       746 sgs~Dg~I~IWDl~~~~~~-~~~~~~h~~~--V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i  822 (860)
                      +++.||.|++||+.++... ...+.++...  +++++|+|++.+ +++++.|+.+++||+......              
T Consensus       305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~~d~~~~~w~l~~~~~~--------------  369 (456)
T KOG0266|consen  305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-LLSASLDRTLKLWDLRSGKSV--------------  369 (456)
T ss_pred             EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-EEEecCCCeEEEEEccCCcce--------------
Confidence            9999999999999998831 4556666555  999999999997 789999999999999985543              


Q ss_pred             EEecCccC---ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         823 FIHGGHTA---KISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       823 ~~~~~h~~---~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ....+|..   .+.+...++.|. .+++|+.|+.|.+
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~  405 (456)
T KOG0266|consen  370 GTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYV  405 (456)
T ss_pred             eeecccCCcceeEecccccCCCC-eEEEEeCCceEEE
Confidence            33334544   344555678888 4779999999886

>KOG0265|consensus

Probab=99.88  E-value=7.7e-22  Score=199.84  Aligned_cols=205  Identities=25%  Similarity=0.404  Sum_probs=179.6

Q ss_pred             hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         612 AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       612 ~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      ..+..+.+|.+.|+.+.|+| ++.+||+|+.|..|.+|++...  .+....+++|.+.|..+.|.++++. +++++.|.+
T Consensus        38 ap~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~-i~S~gtDk~  113 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSH-ILSCGTDKT  113 (338)
T ss_pred             chhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCCE-EEEecCCce
Confidence            34566778899999999999 8999999999999999997643  2345667899999999999999995 888889998


Q ss_pred             eeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccC
Q psy4578         692 QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH  771 (860)
Q Consensus       692 i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h  771 (860)
                                     ++.||.+++   +....+++|+.-|+++.-+.-|..++.+|+.||++++||+|.... ++.+. .
T Consensus       114 ---------------v~~wD~~tG---~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~-~  173 (338)
T KOG0265|consen  114 ---------------VRGWDAETG---KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFE-N  173 (338)
T ss_pred             ---------------EEEEecccc---eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccc-c
Confidence                           999999998   777888999999999997777888899999999999999998776 55554 4


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D  851 (860)
                      ..+++++.|...+.. +.+|+-|+.|++||++.+              ...+.+.||..+|+++..+++|.+ +.+-+.|
T Consensus       174 kyqltAv~f~d~s~q-v~sggIdn~ikvWd~r~~--------------d~~~~lsGh~DtIt~lsls~~gs~-llsnsMd  237 (338)
T KOG0265|consen  174 KYQLTAVGFKDTSDQ-VISGGIDNDIKVWDLRKN--------------DGLYTLSGHADTITGLSLSRYGSF-LLSNSMD  237 (338)
T ss_pred             ceeEEEEEecccccc-eeeccccCceeeeccccC--------------cceEEeecccCceeeEEeccCCCc-ccccccc
Confidence            678999999999987 789999999999999883              457888899999999999999997 5599999


Q ss_pred             CeEee
Q psy4578         852 NIMQK  856 (860)
Q Consensus       852 g~IrI  856 (860)
                      .++++
T Consensus       238 ~tvrv  242 (338)
T KOG0265|consen  238 NTVRV  242 (338)
T ss_pred             ceEEE
Confidence            99986

>KOG0282|consensus

Probab=99.88  E-value=9.6e-23  Score=217.82  Aligned_cols=224  Identities=23%  Similarity=0.338  Sum_probs=192.3

Q ss_pred             hhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578         611 RAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK  690 (860)
Q Consensus       611 ~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg  690 (860)
                      ...+....+|...|+++.|.|..+.+|++|+.|+.|+||++...  ..+++++.+|..+|.+++|+++|.. |++++.|+
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~--~~~lrtf~gH~k~Vrd~~~s~~g~~-fLS~sfD~  280 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD--RRCLRTFKGHRKPVRDASFNNCGTS-FLSASFDR  280 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC--cceehhhhcchhhhhhhhccccCCe-eeeeecce
Confidence            45566677888999999999988999999999999999999873  5789999999999999999999996 89999999


Q ss_pred             ceeeeccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcE
Q psy4578         691 TQFEVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  743 (860)
Q Consensus       691 ~i~~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~l  743 (860)
                      .+.+|+.+++                           +..++.|+.||++++   +.+..+..|-+.|..+.|-++|.+ 
T Consensus       281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~---kvvqeYd~hLg~i~~i~F~~~g~r-  356 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG---KVVQEYDRHLGAILDITFVDEGRR-  356 (503)
T ss_pred             eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch---HHHHHHHhhhhheeeeEEccCCce-
Confidence            9999998875                           457899999999998   677788889999999999999997 


Q ss_pred             EEEeeCCCcEEEEeCCCCcee---------------------------------------------eEEeccCC--CceE
Q psy4578         744 LATGSADKTVALWDLRNLKLK---------------------------------------------LHSFESHK--DEIF  776 (860)
Q Consensus       744 lasgs~Dg~I~IWDl~~~~~~---------------------------------------------~~~~~~h~--~~V~  776 (860)
                      +++++.|++++||+.+.....                                             -..+.+|.  +.-.
T Consensus       357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~  436 (503)
T KOG0282|consen  357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC  436 (503)
T ss_pred             EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence            999999999999997654210                                             11233443  3456


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .+.|||||++ |++|+.||.+.+||.++.              .++..+..|.+++..+.|+|.....+|+|+.||.|++
T Consensus       437 ~v~fSpDG~~-l~SGdsdG~v~~wdwkt~--------------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Iki  501 (503)
T KOG0282|consen  437 QVDFSPDGRT-LCSGDSDGKVNFWDWKTT--------------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKI  501 (503)
T ss_pred             eEEEcCCCCe-EEeecCCccEEEeechhh--------------hhhhccccCCcceEEEEecCCCcceeEecccCceeEe
Confidence            6899999996 899999999999999983              4455667899999999999998888999999999986

>KOG0276|consensus

Probab=99.88  E-value=8.8e-22  Score=215.15  Aligned_cols=248  Identities=19%  Similarity=0.325  Sum_probs=199.8

Q ss_pred             cccccccCCCCCcccccceeeeeeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCc
Q psy4578         566 LLPVFRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQK  645 (860)
Q Consensus       566 lL~~f~~l~a~~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~  645 (860)
                      +...|.....|.....+.--.+.+.    .|+.+...-+|.. ....++..+..|.+-|.+++.+| ...+++|+|.|-+
T Consensus        47 mVksfeV~~~PvRa~kfiaRknWiv----~GsDD~~IrVfny-nt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~  120 (794)
T KOG0276|consen   47 MVKSFEVSEVPVRAAKFIARKNWIV----TGSDDMQIRVFNY-NTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMT  120 (794)
T ss_pred             eeeeeeecccchhhheeeeccceEE----EecCCceEEEEec-ccceeeEEeeccccceeeeeecC-CCCeEEecCCccE
Confidence            3445555555555554444333332    3444444434333 34566777778889999999999 6888999999999


Q ss_pred             EEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeec
Q psy4578         646 LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD  725 (860)
Q Consensus       646 I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~  725 (860)
                      |++||.+..  ..+.+++.+|..-|.+++|+|.+...+++++-|++               |++|.+.+.   .+..++.
T Consensus       121 iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT---------------VKVWslgs~---~~nfTl~  180 (794)
T KOG0276|consen  121 IKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT---------------VKVWSLGSP---HPNFTLE  180 (794)
T ss_pred             EEEeeccCc--eeeeeEEcCcceEEEEEEecCCCccceeeeecccc---------------EEEEEcCCC---CCceeee
Confidence            999999875  78889999999999999999998888999999999               999999886   7788999


Q ss_pred             CCCCCeEEEEEcCCC--CcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECC
Q psy4578         726 AHTAEVNCLSFNPYS--EYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  803 (860)
Q Consensus       726 ~h~~~I~sl~~sp~g--~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~  803 (860)
                      +|...|+|+++-+-|  ++ ++||+.|.+|+|||..+..+ +.++.+|...|..+.|+|.-+ +++||+.||+++||+-.
T Consensus       181 gHekGVN~Vdyy~~gdkpy-lIsgaDD~tiKvWDyQtk~C-V~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~  257 (794)
T KOG0276|consen  181 GHEKGVNCVDYYTGGDKPY-LISGADDLTIKVWDYQTKSC-VQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSK  257 (794)
T ss_pred             ccccCcceEEeccCCCcce-EEecCCCceEEEeecchHHH-HHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCc
Confidence            999999999998755  44 89999999999999999988 999999999999999999998 69999999999999988


Q ss_pred             CCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeec
Q psy4578         804 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKP  857 (860)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~  857 (860)
                      +.+...              .+.-..+.|++++-.+.++. ++.|.+.|.+.|.
T Consensus       258 Ty~lE~--------------tLn~gleRvW~I~~~k~~~~-i~vG~Deg~i~v~  296 (794)
T KOG0276|consen  258 TYKLEK--------------TLNYGLERVWCIAAHKGDGK-IAVGFDEGSVTVK  296 (794)
T ss_pred             ceehhh--------------hhhcCCceEEEEeecCCCCe-EEEeccCCcEEEE
Confidence            854432              22233567888888887774 7788888887663

>KOG0264|consensus

Probab=99.88  E-value=7.3e-22  Score=210.35  Aligned_cols=216  Identities=23%  Similarity=0.439  Sum_probs=186.9

Q ss_pred             hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc-------cCeeeccCCCCCeeEEEEccCCCeEEEE
Q psy4578         613 QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS-------KPSHTVDAHTAEVNCLSFNPYSEYILAT  685 (860)
Q Consensus       613 ~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~-------~~~~~~~~h~~~V~~l~~sp~g~~llas  685 (860)
                      ++.+.+.|.+.|+.+...|++..++|+++..|.|.|||.......       .+-..+.+|...-.+++|++.....+++
T Consensus       116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls  195 (422)
T KOG0264|consen  116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS  195 (422)
T ss_pred             EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence            445567788999999999999999999999999999999753221       2223678899888899999988878999


Q ss_pred             EeCCCceeeecccccccCCCcEEEEeCCCCCC----CCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCC
Q psy4578         686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNV----SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL  761 (860)
Q Consensus       686 gs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~----~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~  761 (860)
                      |+.|++               |.+||+.....    ..+...+.+|...|..++|+|....+|++++.|+.+.|||+|++
T Consensus       196 ~~~d~~---------------i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~  260 (422)
T KOG0264|consen  196 GSDDHT---------------ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN  260 (422)
T ss_pred             ccCCCc---------------EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC
Confidence            999999               99999976432    45677889999999999999998889999999999999999962


Q ss_pred             -ceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccC
Q psy4578         762 -KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN  840 (860)
Q Consensus       762 -~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd  840 (860)
                       ..+.....+|.+.|+|++|+|.+.++|||||.|++|.+||+++..             .++..+.+|...|..+.|+|.
T Consensus       261 ~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-------------~~lh~~e~H~dev~~V~WSPh  327 (422)
T KOG0264|consen  261 TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-------------KPLHTFEGHEDEVFQVEWSPH  327 (422)
T ss_pred             CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-------------cCceeccCCCcceEEEEeCCC
Confidence             223667788999999999999999999999999999999999854             357888899999999999999


Q ss_pred             CCeEEEEEeCCCeEee
Q psy4578         841 EPWVICSVSEDNIMQK  856 (860)
Q Consensus       841 g~~Llasgs~Dg~IrI  856 (860)
                      ...++|+++.|+.+.|
T Consensus       328 ~etvLASSg~D~rl~v  343 (422)
T KOG0264|consen  328 NETVLASSGTDRRLNV  343 (422)
T ss_pred             CCceeEecccCCcEEE
Confidence            9999999999999886

>KOG0269|consensus

Probab=99.88  E-value=5.4e-22  Score=222.00  Aligned_cols=223  Identities=23%  Similarity=0.422  Sum_probs=184.9

Q ss_pred             ceeEEEEeeccch---hhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEE
Q psy4578         599 HIEEVMYLENKTR---AQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS  674 (860)
Q Consensus       599 ~l~~il~l~n~~~---~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~  674 (860)
                      .-+.++..|+..+   .++ ..+..|...+++++|++...++|++|+.||.|++||++..   ....++.+....|.+|.
T Consensus       107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~---~S~~t~~~nSESiRDV~  183 (839)
T KOG0269|consen  107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK---KSKSTFRSNSESIRDVK  183 (839)
T ss_pred             cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc---cccccccccchhhhcee
Confidence            3344556666655   444 3455677899999999999999999999999999999974   44567777889999999


Q ss_pred             EccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEE
Q psy4578         675 FNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA  754 (860)
Q Consensus       675 ~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~  754 (860)
                      |+|...+.|+++.+.|.               +.+||++...  +....+.+|.+.|.|+.|||++.+ |||||+|+.|+
T Consensus       184 fsp~~~~~F~s~~dsG~---------------lqlWDlRqp~--r~~~k~~AH~GpV~c~nwhPnr~~-lATGGRDK~vk  245 (839)
T KOG0269|consen  184 FSPGYGNKFASIHDSGY---------------LQLWDLRQPD--RCEKKLTAHNGPVLCLNWHPNREW-LATGGRDKMVK  245 (839)
T ss_pred             eccCCCceEEEecCCce---------------EEEeeccCch--hHHHHhhcccCceEEEeecCCCce-eeecCCCccEE
Confidence            99988888999999998               9999999764  566778899999999999998885 99999999999


Q ss_pred             EEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE--CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCce
Q psy4578         755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI  832 (860)
Q Consensus       755 IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs--~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I  832 (860)
                      |||..+........-....+|.++.|-|..++.|++|+  .|-.|+|||++.             +..+..++..|...+
T Consensus       246 iWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR-------------PYIP~~t~~eH~~~v  312 (839)
T KOG0269|consen  246 IWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR-------------PYIPYATFLEHTDSV  312 (839)
T ss_pred             EEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecc-------------ccccceeeeccCccc
Confidence            99998765422222234678999999999999899987  688999999997             345667788999999


Q ss_pred             EEEEEccCCCeEEEEEeCCCeEe
Q psy4578         833 SDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       833 ~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      +.++|......++.+++.||+|-
T Consensus       313 t~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  313 TGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             cceeccCCCceeeEeecCccHHH
Confidence            99999886677899999999874

>KOG0266|consensus

Probab=99.88  E-value=3.5e-21  Score=221.67  Aligned_cols=200  Identities=27%  Similarity=0.482  Sum_probs=170.2

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      ...|.++.|++ ++..+++++.|+.+++|+...... .....+.+|...|.+++|+|++.+ +++|+.|++         
T Consensus       159 ~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~-l~s~s~D~t---------  226 (456)
T KOG0266|consen  159 CPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSY-LLSGSDDKT---------  226 (456)
T ss_pred             cCceEEEEEcC-CCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcE-EEEecCCce---------
Confidence            46799999998 777799999999999999966431 245566889999999999999995 999999999         


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEE
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW  780 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~f  780 (860)
                            +++||+...  ...+.++.+|...|++++|+|+|+ ++++|+.|++|+|||++++.+ ...+.+|...|++++|
T Consensus       227 ------iriwd~~~~--~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~-~~~l~~hs~~is~~~f  296 (456)
T KOG0266|consen  227 ------LRIWDLKDD--GRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGEC-VRKLKGHSDGISGLAF  296 (456)
T ss_pred             ------EEEeeccCC--CeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeE-EEeeeccCCceEEEEE
Confidence                  999999433  267788999999999999999995 799999999999999999887 8999999999999999


Q ss_pred             cCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccC--ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         781 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA--KISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       781 sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~--~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +++|.. |++++.||.|++||+.++...            +.....++..  +++.++|+|++.+ +++++.|+.+++
T Consensus       297 ~~d~~~-l~s~s~d~~i~vwd~~~~~~~------------~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~~d~~~~~  360 (456)
T KOG0266|consen  297 SPDGNL-LVSASYDGTIRVWDLETGSKL------------CLKLLSGAENSAPVTSVQFSPNGKY-LLSASLDRTLKL  360 (456)
T ss_pred             CCCCCE-EEEcCCCccEEEEECCCCcee------------eeecccCCCCCCceeEEEECCCCcE-EEEecCCCeEEE
Confidence            999985 888899999999999985521            2223334443  5999999999997 568889988876

>KOG0315|consensus

Probab=99.87  E-value=4.8e-21  Score=189.27  Aligned_cols=215  Identities=22%  Similarity=0.331  Sum_probs=172.7

Q ss_pred             EEEEeeccchh-hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         602 EVMYLENKTRA-QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       602 ~il~l~n~~~~-~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      .-+|.-+.... .+..+-+|...|+++.|.. +++.+++|+.||+++|||++...   . .....|..+|+++..+|+..
T Consensus        63 vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~---~-qR~~~~~spVn~vvlhpnQt  137 (311)
T KOG0315|consen   63 VRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLS---C-QRNYQHNSPVNTVVLHPNQT  137 (311)
T ss_pred             eEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcc---c-chhccCCCCcceEEecCCcc
Confidence            33444444444 3444556668999999996 89999999999999999999732   2 23345779999999999877


Q ss_pred             eEEEEEeCCCceeeeccccc----------------------------ccCCCcEEEEeCCCCC---CCCCeeeecCCCC
Q psy4578         681 YILATGSADKTQFEVEEEEE----------------------------ENYDQKLMIWDTRSHN---VSKPSHTVDAHTA  729 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~----------------------------~~~dg~I~iwDl~~~~---~~~~~~~~~~h~~  729 (860)
                      . |++|..+|.|++|++...                            ....|.+.+|++-...   ...++..++.|.+
T Consensus       138 e-Lis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~  216 (311)
T KOG0315|consen  138 E-LISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG  216 (311)
T ss_pred             e-EEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence            5 899999999999998764                            1346889999987643   2356777899999


Q ss_pred             CeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578         730 EVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  809 (860)
Q Consensus       730 ~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~  809 (860)
                      .+..+.+||++++ ||++|.|.+++||+.++.-.....+.+|...++.++||.+|++ |+||+.|+.+++||+..++.  
T Consensus       217 ~il~C~lSPd~k~-lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Y-lvTassd~~~rlW~~~~~k~--  292 (311)
T KOG0315|consen  217 HILRCLLSPDVKY-LATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEY-LVTASSDHTARLWDLSAGKE--  292 (311)
T ss_pred             eEEEEEECCCCcE-EEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccE-EEecCCCCceeecccccCce--
Confidence            9999999999996 9999999999999999883335678899999999999999997 89999999999999998554  


Q ss_pred             ccccccCCCCccEEEecCccCceEEEEEc
Q psy4578         810 STEDAEDGPPELLFIHGGHTAKISDFSWN  838 (860)
Q Consensus       810 ~~~~~~~~~~~~i~~~~~h~~~I~~i~~s  838 (860)
                                  +....+|.....+++.+
T Consensus       293 ------------v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  293 ------------VRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ------------eeecCCcccccEEEEee
Confidence                        44555777666666543

>KOG0281|consensus

Probab=99.87  E-value=1.1e-21  Score=201.05  Aligned_cols=252  Identities=19%  Similarity=0.341  Sum_probs=195.0

Q ss_pred             ccceeeeeeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe
Q psy4578         581 DLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS  660 (860)
Q Consensus       581 D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~  660 (860)
                      +-..+++.-.....+|. ..+.+-.|+......+..+.+|.++|.|+.|+   ..++++|+.|.+|+|||++++   .++
T Consensus       198 kgVYClQYDD~kiVSGl-rDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tg---e~l  270 (499)
T KOG0281|consen  198 KGVYCLQYDDEKIVSGL-RDNTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTG---EPL  270 (499)
T ss_pred             CceEEEEecchhhhccc-ccCceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCC---chh
Confidence            33344444333333333 33444444445556677788999999999997   469999999999999999995   667


Q ss_pred             eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc----------------------------ccCCCcEEEEeC
Q psy4578         661 HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE----------------------------ENYDQKLMIWDT  712 (860)
Q Consensus       661 ~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~----------------------------~~~dg~I~iwDl  712 (860)
                      .++.+|...|..+.|+.  . .+++++.|.++.+|++...                            +++|..|++|++
T Consensus       271 ~tlihHceaVLhlrf~n--g-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~  347 (499)
T KOG0281|consen  271 NTLIHHCEAVLHLRFSN--G-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST  347 (499)
T ss_pred             hHHhhhcceeEEEEEeC--C-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEec
Confidence            88889999999999984  3 4899999999999987653                            357889999999


Q ss_pred             CCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE
Q psy4578         713 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG  792 (860)
Q Consensus       713 ~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs  792 (860)
                      .+.   ..+.++.+|...|-|+.+.  |+ ++++||.|.+|++||+..+.+ +..++||..-|.++.|+.  +. +++|+
T Consensus       348 st~---efvRtl~gHkRGIAClQYr--~r-lvVSGSSDntIRlwdi~~G~c-LRvLeGHEeLvRciRFd~--kr-IVSGa  417 (499)
T KOG0281|consen  348 STC---EFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRFDN--KR-IVSGA  417 (499)
T ss_pred             cce---eeehhhhcccccceehhcc--Ce-EEEecCCCceEEEEeccccHH-HHHHhchHHhhhheeecC--ce-eeecc
Confidence            998   6778899999999999885  66 699999999999999999998 889999999999999974  33 78999


Q ss_pred             CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeeccC
Q psy4578         793 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPFK  859 (860)
Q Consensus       793 ~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~f~  859 (860)
                      .||+|++||+.........     ...-++.....|.+.|..+.|..  ..++++.-+|.++.++|.
T Consensus       418 YDGkikvWdl~aaldpra~-----~~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  418 YDGKIKVWDLQAALDPRAP-----ASTLCLRTLVEHSGRVFRLQFDE--FQIISSSHDDTILIWDFL  477 (499)
T ss_pred             ccceEEEEecccccCCccc-----ccchHHHhhhhccceeEEEeecc--eEEEeccCCCeEEEEEcC
Confidence            9999999999985543221     12345666778999999999965  334544444444455764

>KOG0643|consensus

Probab=99.87  E-value=3e-21  Score=192.49  Aligned_cols=235  Identities=22%  Similarity=0.294  Sum_probs=194.7

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      ..+.+|..+++.+.++. ++.+|++|+.|.++.||-..+|   ..+.++.+|.+.|+|+..+.+..+ +++|+.|.++.+
T Consensus         4 i~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nG---erlGty~GHtGavW~~Did~~s~~-liTGSAD~t~kL   78 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNG---ERLGTYDGHTGAVWCCDIDWDSKH-LITGSADQTAKL   78 (327)
T ss_pred             cccccCccccceEEecC-CCcEEEEecCCCCceEEEecCC---ceeeeecCCCceEEEEEecCCcce-eeeccccceeEE
Confidence            34567889999999997 8999999999999999988774   558899999999999999998885 999999999999


Q ss_pred             ecccccc-------------------------------cCCCcEEEEeCCCCC----CCCCeeeecCCCCCeEEEEEcCC
Q psy4578         695 VEEEEEE-------------------------------NYDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLSFNPY  739 (860)
Q Consensus       695 ~~~~~~~-------------------------------~~dg~I~iwDl~~~~----~~~~~~~~~~h~~~I~sl~~sp~  739 (860)
                      |+...+.                               +..+.|.++|++...    ...++..+..+...++.+-|.|-
T Consensus        79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence            9887651                               234568888887432    22456777788899999999999


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC---
Q psy4578         740 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED---  816 (860)
Q Consensus       740 g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~---  816 (860)
                      +.+ +++|..||.|.+||.+++...+..-..|...|+.+++++++.+ ++|++.|.+-++||+.+............   
T Consensus       159 ~~~-ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~  236 (327)
T KOG0643|consen  159 GET-IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRTLEVLKTYTTERPVNT  236 (327)
T ss_pred             CCE-EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce-EEecccCccceeeeccceeeEEEeeecccccc
Confidence            996 8899999999999999987767788889999999999999986 89999999999999998766544322110   


Q ss_pred             --------------C------------------------CCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeec
Q psy4578         817 --------------G------------------------PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKP  857 (860)
Q Consensus       817 --------------~------------------------~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~  857 (860)
                                    +                        ...-+....+|-++|++++|+|+|+ ..++|++||.||+.
T Consensus       237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-sYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-SYSSGGEDGYVRLH  314 (327)
T ss_pred             eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-ccccCCCCceEEEE
Confidence                          0                        0012334468999999999999999 69999999999984

>KOG0292|consensus

Probab=99.87  E-value=2.1e-21  Score=218.97  Aligned_cols=211  Identities=18%  Similarity=0.394  Sum_probs=183.6

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      .....|.+++|+| ...+++++-..|.|++||.+.+   ..+..+..|.++|..+.|+|+++ +|++|++|-.       
T Consensus         7 skSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~---tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDyk-------   74 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYK-------   74 (1202)
T ss_pred             cccccccceecCC-CCCEEEEeecCceeeeehhhhh---hHHhhhhccCCccceeeecCCCC-eEEecCCccE-------
Confidence            4456799999999 7888999999999999999874   56788999999999999999999 6999999998       


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEE
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV  778 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l  778 (860)
                              |++|+..+.   +.+.++.||-..|+.+.||+.-.+ ++++|.|.+|+||+..+..+ +..+.||...|.|.
T Consensus        75 --------IkVWnYk~r---rclftL~GHlDYVRt~~FHheyPW-IlSASDDQTIrIWNwqsr~~-iavltGHnHYVMcA  141 (1202)
T KOG0292|consen   75 --------IKVWNYKTR---RCLFTLLGHLDYVRTVFFHHEYPW-ILSASDDQTIRIWNWQSRKC-IAVLTGHNHYVMCA  141 (1202)
T ss_pred             --------EEEEecccc---eehhhhccccceeEEeeccCCCce-EEEccCCCeEEEEeccCCce-EEEEecCceEEEee
Confidence                    999999987   788899999999999999999997 88999999999999999988 99999999999999


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc---------------cCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578         779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA---------------EDGPPELLFIHGGHTAKISDFSWNPNEPW  843 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~---------------~~~~~~~i~~~~~h~~~I~~i~~spdg~~  843 (860)
                      .|+|... +++++|-|.+|++||+............               ........+.+.||...|.-++|+|.-+ 
T Consensus       142 qFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-  219 (1202)
T KOG0292|consen  142 QFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-  219 (1202)
T ss_pred             ccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-
Confidence            9999887 5899999999999999865443322210               0012234567789999999999999999 


Q ss_pred             EEEEEeCCCeEee
Q psy4578         844 VICSVSEDNIMQK  856 (860)
Q Consensus       844 Llasgs~Dg~IrI  856 (860)
                      ++++|++|..|++
T Consensus       220 liVSG~DDRqVKl  232 (1202)
T KOG0292|consen  220 LIVSGADDRQVKL  232 (1202)
T ss_pred             eEEecCCcceeeE
Confidence            7999999999985

>KOG0310|consensus

Probab=99.87  E-value=6.2e-21  Score=204.47  Aligned_cols=212  Identities=24%  Similarity=0.379  Sum_probs=177.3

Q ss_pred             eeccchhhhhh-hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEE
Q psy4578         606 LENKTRAQICQ-LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA  684 (860)
Q Consensus       606 l~n~~~~~l~~-l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~lla  684 (860)
                      +.+........ +..-...|++++|.. +|.++|+|+..|.|+|||..+   ...+..+.+|+.+|..+.|+|++..+++
T Consensus        52 ly~~~~~~~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~---r~iLR~~~ah~apv~~~~f~~~d~t~l~  127 (487)
T KOG0310|consen   52 LYSSVTRSVRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKS---RVILRQLYAHQAPVHVTKFSPQDNTMLV  127 (487)
T ss_pred             EEecchhhhhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEecccc---HHHHHHHhhccCceeEEEecccCCeEEE
Confidence            33444444444 444557799999996 899999999999999999655   3456788999999999999999999999


Q ss_pred             EEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee
Q psy4578         685 TGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK  764 (860)
Q Consensus       685 sgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~  764 (860)
                      +|++|+.               +++||+.+..   ....+.+|+..|.|.+|+|...++++|||.||.|++||++....+
T Consensus       128 s~sDd~v---------------~k~~d~s~a~---v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~  189 (487)
T KOG0310|consen  128 SGSDDKV---------------VKYWDLSTAY---VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR  189 (487)
T ss_pred             ecCCCce---------------EEEEEcCCcE---EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce
Confidence            9999998               9999999873   355789999999999999999999999999999999999988654


Q ss_pred             eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeE
Q psy4578         765 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWV  844 (860)
Q Consensus       765 ~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~L  844 (860)
                      +..+. |..+|..+.+-|.|. ++++|| ...+++||+.++..             .+.....|...|+|+++..++.. 
T Consensus       190 v~eln-hg~pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~~G~q-------------ll~~~~~H~KtVTcL~l~s~~~r-  252 (487)
T KOG0310|consen  190 VVELN-HGCPVESVLALPSGS-LIASAG-GNSVKVWDLTTGGQ-------------LLTSMFNHNKTVTCLRLASDSTR-  252 (487)
T ss_pred             eEEec-CCCceeeEEEcCCCC-EEEEcC-CCeEEEEEecCCce-------------ehhhhhcccceEEEEEeecCCce-
Confidence            66665 899999999999987 477776 56899999997543             33444459999999999999986 


Q ss_pred             EEEEeCCCeEee
Q psy4578         845 ICSVSEDNIMQK  856 (860)
Q Consensus       845 lasgs~Dg~IrI  856 (860)
                      |.++|-|+.|+|
T Consensus       253 LlS~sLD~~VKV  264 (487)
T KOG0310|consen  253 LLSGSLDRHVKV  264 (487)
T ss_pred             EeecccccceEE
Confidence            559999999987

>KOG0313|consensus

Probab=99.87  E-value=4.8e-21  Score=199.36  Aligned_cols=256  Identities=25%  Similarity=0.400  Sum_probs=202.1

Q ss_pred             cccccceeeeeeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCC--cEEEEEeCCCcEEEEEcCCCC
Q psy4578         578 TQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHE--SLFGSVADDQKLMIWDTRSHN  655 (860)
Q Consensus       578 ~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~--~~lasgs~DG~I~IWd~~~~~  655 (860)
                      .++|+...++.-  +.+.-++....+..+|+.......+..+|.++|.+++|...+.  ..|++++.|.++++|..+.++
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence            445665555443  1111122223346678888888899999999999999975332  359999999999999998754


Q ss_pred             c-ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc----------------------------------
Q psy4578         656 V-SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE----------------------------------  700 (860)
Q Consensus       656 ~-~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~----------------------------------  700 (860)
                      . ........||...|-++...++|.. +++|+.|..+-+|.....                                  
T Consensus       181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  181 NKVKALKVCRGHKRSVDSVSVDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             hhhhHHhHhcccccceeEEEecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence            3 2233344599999999999999985 999999999999982111                                  


Q ss_pred             -----------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce
Q psy4578         701 -----------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL  763 (860)
Q Consensus       701 -----------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~  763 (860)
                                       .++|..|+.||+.++.   ...++.+ ...+.|+.++|... ++++|+.|..+++||.|++..
T Consensus       260 t~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~---~~~~~~~-~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  260 TEPVSSVVWSDATVIYSVSWDHTIKVWDLETGG---LKSTLTT-NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             ccceeeEEEcCCCceEeecccceEEEEEeeccc---ceeeeec-CcceeEeecccccc-eeeecCCCCceeecCCCCCCC
Confidence                             2468899999999983   3334432 46789999999777 799999999999999997643


Q ss_pred             --eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCC
Q psy4578         764 --KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE  841 (860)
Q Consensus       764 --~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg  841 (860)
                        ...++.+|.+.|.++.|+|...++|++|+.||++++||+++.             ..+++.+.+|...|.++.|+..+
T Consensus       335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~-------------k~plydI~~h~DKvl~vdW~~~~  401 (423)
T KOG0313|consen  335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST-------------KAPLYDIAGHNDKVLSVDWNEGG  401 (423)
T ss_pred             ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC-------------CCcceeeccCCceEEEEeccCCc
Confidence              467788999999999999999999999999999999999983             24688889999999999998765


Q ss_pred             CeEEEEEeCCCeEee
Q psy4578         842 PWVICSVSEDNIMQK  856 (860)
Q Consensus       842 ~~Llasgs~Dg~IrI  856 (860)
                        ++++||.|+.++|
T Consensus       402 --~IvSGGaD~~l~i  414 (423)
T KOG0313|consen  402 --LIVSGGADNKLRI  414 (423)
T ss_pred             --eEEeccCcceEEE
Confidence              4889999999998

>KOG0293|consensus

Probab=99.87  E-value=2.8e-21  Score=202.39  Aligned_cols=255  Identities=19%  Similarity=0.351  Sum_probs=190.1

Q ss_pred             cccccceeeeeeecceeecccceeEEEEeeccc---hhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC
Q psy4578         578 TQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKT---RAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS  653 (860)
Q Consensus       578 ~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~---~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~  653 (860)
                      .+.|-..+..+.-.|.+..+........+|...   ..+ ..++.+|..+|.-+.|+| +.+++++|+.|..+.+||+.+
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~t  300 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDT  300 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCc
Confidence            345667777777777776554443333333221   222 445668889999999999 778888888888999999999


Q ss_pred             CCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc--ccC-------------------------CCc
Q psy4578         654 HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE--ENY-------------------------DQK  706 (860)
Q Consensus       654 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~--~~~-------------------------dg~  706 (860)
                      +......  -.++...+.+++|+|||.. +++|+.|+++..|+.++.  +.+                         |..
T Consensus       301 gd~~~~y--~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~  377 (519)
T KOG0293|consen  301 GDLRHLY--PSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKK  377 (519)
T ss_pred             chhhhhc--ccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccc
Confidence            7543222  1345788999999999996 999999999999988876  222                         333


Q ss_pred             EEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc--eEEEEEcCCC
Q psy4578         707 LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE--IFQVQWSPHN  784 (860)
Q Consensus       707 I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~--V~~l~fsp~g  784 (860)
                      |++++..+...   . .+.....+|++++.|.+|.+ +.+.-.+..+++||+..... +..+.||...  +-.-+|--..
T Consensus       378 i~l~~~e~~~d---r-~lise~~~its~~iS~d~k~-~LvnL~~qei~LWDl~e~~l-v~kY~Ghkq~~fiIrSCFgg~~  451 (519)
T KOG0293|consen  378 IRLYNREARVD---R-GLISEEQPITSFSISKDGKL-ALVNLQDQEIHLWDLEENKL-VRKYFGHKQGHFIIRSCFGGGN  451 (519)
T ss_pred             eeeechhhhhh---h-ccccccCceeEEEEcCCCcE-EEEEcccCeeEEeecchhhH-HHHhhcccccceEEEeccCCCC
Confidence            44444433211   1 12223568999999999996 66777889999999997776 7788888754  3334565444


Q ss_pred             CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         785 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       785 ~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ..++++|+.|+.|+||+..+              ..++..+.||...|.+++|+|..++++|++|+||+|||
T Consensus       452 ~~fiaSGSED~kvyIWhr~s--------------gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI  509 (519)
T KOG0293|consen  452 DKFIASGSEDSKVYIWHRIS--------------GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI  509 (519)
T ss_pred             cceEEecCCCceEEEEEccC--------------CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence            45699999999999999887              56788899999999999999999999999999999998

>KOG0318|consensus

Probab=99.87  E-value=2.5e-20  Score=200.82  Aligned_cols=262  Identities=18%  Similarity=0.365  Sum_probs=206.4

Q ss_pred             CCCcccccceeeeeeecceeecccceeEEEEeeccchhhhhhhh----hcccceeeeEeeccCCcEEEEEeCCCcEEEEE
Q psy4578         575 STVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLL----DKLRLLIDVAWHLLHESLFGSVADDQKLMIWD  650 (860)
Q Consensus       575 a~~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~----~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd  650 (860)
                      .-..+..|.-++++...|.+..+......+++.+...++....+    .|.+.|.+++|+| ++..++|++.|.+++|||
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWD  263 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEE
Confidence            33455667888888888888766666666666666655544333    5789999999999 788999999999999999


Q ss_pred             cCCCCcc----------------------------------------cCeeeccCCCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578         651 TRSHNVS----------------------------------------KPSHTVDAHTAEVNCLSFNPYSEYILATGSADK  690 (860)
Q Consensus       651 ~~~~~~~----------------------------------------~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg  690 (860)
                      +.+....                                        .+...+.+|...|++++.++++.+ +.+|+.||
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~-i~SgsyDG  342 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT-IYSGSYDG  342 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE-EEeeccCc
Confidence            8754211                                        123456789999999999999986 89999999


Q ss_pred             ceeeeccccc----------------------------------------------------------------------
Q psy4578         691 TQFEVEEEEE----------------------------------------------------------------------  700 (860)
Q Consensus       691 ~i~~~~~~~~----------------------------------------------------------------------  700 (860)
                      .|.-|+....                                                                      
T Consensus       343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv  422 (603)
T KOG0318|consen  343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV  422 (603)
T ss_pred             eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence            9888865432                                                                      


Q ss_pred             --------------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCc
Q psy4578         701 --------------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  742 (860)
Q Consensus       701 --------------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~  742 (860)
                                                            ++.||++++|.+..... ........|.++|++++|+|++.+
T Consensus       423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~y  501 (603)
T KOG0318|consen  423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAY  501 (603)
T ss_pred             EecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcE
Confidence                                                  13466778887776543 233345579999999999999996


Q ss_pred             EEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccE
Q psy4578         743 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL  822 (860)
Q Consensus       743 llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i  822 (860)
                       ||+|...+.+.+||+.+.......+.-|...|.+++|+|+.. +++||+-|.+|.||++....             ..+
T Consensus       502 -la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~-------------~~i  566 (603)
T KOG0318|consen  502 -LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPA-------------KHI  566 (603)
T ss_pred             -EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChh-------------hhe
Confidence             999999999999999998875666777999999999999998 59999999999999998732             335


Q ss_pred             EEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         823 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       823 ~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ...+.|...|+.+.|-.+..  +++.+.|..|++
T Consensus       567 ~iknAH~~gVn~v~wlde~t--vvSsG~Da~iK~  598 (603)
T KOG0318|consen  567 IIKNAHLGGVNSVAWLDEST--VVSSGQDANIKV  598 (603)
T ss_pred             EeccccccCceeEEEecCce--EEeccCcceeEE
Confidence            66678998899999988766  668888887774

>KOG0292|consensus

Probab=99.86  E-value=6e-21  Score=215.32  Aligned_cols=216  Identities=24%  Similarity=0.412  Sum_probs=185.4

Q ss_pred             EEEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      ++.+|+-.-..+ .++-.|.++|.+++|+| .+.+|++|+.|-+|+||+..+   .+++.++.+|-..|..+.|++.-++
T Consensus        32 ~IQlWDYRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~---rrclftL~GHlDYVRt~~FHheyPW  107 (1202)
T KOG0292|consen   32 VIQLWDYRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKT---RRCLFTLLGHLDYVRTVFFHHEYPW  107 (1202)
T ss_pred             eeeeehhhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEeccc---ceehhhhccccceeEEeeccCCCce
Confidence            456666655554 44556789999999998 799999999999999999988   5778899999999999999999996


Q ss_pred             EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCC
Q psy4578         682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL  761 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~  761 (860)
                       ++++|+|-+               |+||+..+.   ..+..+.||.-.|.|..|+|... +++++|-|.+|++||+...
T Consensus       108 -IlSASDDQT---------------IrIWNwqsr---~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGL  167 (1202)
T KOG0292|consen  108 -ILSASDDQT---------------IRIWNWQSR---KCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGL  167 (1202)
T ss_pred             -EEEccCCCe---------------EEEEeccCC---ceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecch
Confidence             899999998               999999987   77889999999999999999888 6999999999999998643


Q ss_pred             ce----------------------------eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccc
Q psy4578         762 KL----------------------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED  813 (860)
Q Consensus       762 ~~----------------------------~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~  813 (860)
                      +.                            .-+.+.||...|+-++|+|.-+ ++++|++|..|++|.+...+.      
T Consensus       168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKa------  240 (1202)
T KOG0292|consen  168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA------  240 (1202)
T ss_pred             hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccc------
Confidence            21                            1245678999999999999998 699999999999999886332      


Q ss_pred             ccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         814 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       814 ~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                            --+-+..||.+.|+++-|+|... ++.+.|+|++|||
T Consensus       241 ------WEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirV  276 (1202)
T KOG0292|consen  241 ------WEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRV  276 (1202)
T ss_pred             ------eeehhhhcccCCcceEEecCccc-eeEecCCCccEEE
Confidence                  12345679999999999999888 6889999999997

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=5.6e-20  Score=226.67  Aligned_cols=204  Identities=26%  Similarity=0.362  Sum_probs=167.9

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      .+...|.+++|++..+.++++|+.||+|++||+.++   ..+..+.+|.+.|++++|+|.+..+|++|+.||+       
T Consensus       530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~---~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~-------  599 (793)
T PLN00181        530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS---QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS-------  599 (793)
T ss_pred             cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC---eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE-------
Confidence            345679999999877889999999999999999874   4567788999999999999744346999999999       


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC-CCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEE
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ  777 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp-~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~  777 (860)
                              |++||++++   ..+..+..+ ..|.++.|++ +|. .+++|+.||.|++||+++...+...+.+|...|.+
T Consensus       600 --------v~iWd~~~~---~~~~~~~~~-~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~  666 (793)
T PLN00181        600 --------VKLWSINQG---VSIGTIKTK-ANICCVQFPSESGR-SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSY  666 (793)
T ss_pred             --------EEEEECCCC---cEEEEEecC-CCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEE
Confidence                    999999876   445555544 6799999965 455 69999999999999999876546778899999999


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         778 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       778 l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +.|. ++.. +++++.|++|++||++.....        ....++..+.+|...+..++|++++. ++++|+.|+.|++
T Consensus       667 v~f~-~~~~-lvs~s~D~~ikiWd~~~~~~~--------~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~i  734 (793)
T PLN00181        667 VRFV-DSST-LVSSSTDNTLKLWDLSMSISG--------INETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFV  734 (793)
T ss_pred             EEEe-CCCE-EEEEECCCEEEEEeCCCCccc--------cCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEE
Confidence            9997 5554 889999999999999753210        11245677889999999999999998 5889999999886

>KOG0291|consensus

Probab=99.86  E-value=2e-20  Score=208.70  Aligned_cols=235  Identities=23%  Similarity=0.398  Sum_probs=192.4

Q ss_pred             CCCcccccceeeeeeecceeecccceeEEEEeeccchhhhhhhhh-cccceeeeEeeccCCcEEEEEeC-CCcEEEEEcC
Q psy4578         575 STVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLD-KLRLLIDVAWHLLHESLFGSVAD-DQKLMIWDTR  652 (860)
Q Consensus       575 a~~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~-~~~~V~~v~~sp~~~~~lasgs~-DG~I~IWd~~  652 (860)
                      +......++.-.+++++|+-+|...+.      ......+.+... ...+|..++|+. .|+.+|.|+. -|.+-||+.+
T Consensus       266 ~kvtaa~fH~~t~~lvvgFssG~f~Ly------elP~f~lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWq  338 (893)
T KOG0291|consen  266 SKVTAAAFHKGTNLLVVGFSSGEFGLY------ELPDFNLIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQ  338 (893)
T ss_pred             cceeeeeccCCceEEEEEecCCeeEEE------ecCCceEEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEee
Confidence            445667888888999999877764433      233333333333 346899999997 6777777664 5899999999


Q ss_pred             CCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeE
Q psy4578         653 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVN  732 (860)
Q Consensus       653 ~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~  732 (860)
                      +.   .-+...++|...++|++++|||+ ++++|+.||.               |+|||..++   .++.++..|++.|+
T Consensus       339 sE---sYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgK---------------VKvWn~~Sg---fC~vTFteHts~Vt  396 (893)
T KOG0291|consen  339 SE---SYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGK---------------VKVWNTQSG---FCFVTFTEHTSGVT  396 (893)
T ss_pred             cc---ceeeeccccccceeeEEECCCCc-EEEeccCCCc---------------EEEEeccCc---eEEEEeccCCCceE
Confidence            84   34666789999999999999999 5999999998               999999987   78899999999999


Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc-CCCceEEEEEcCCCCCEEEEEECCC-cEEEEECCCCCcccc
Q psy4578         733 CLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGTDR-RLHVWDLSKIGEEQS  810 (860)
Q Consensus       733 sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~-h~~~V~~l~fsp~g~~lL~tgs~Dg-~I~iWdl~~~~~~~~  810 (860)
                      .+.|+..|+ .++++|-||+|+.||+...+. .+++.. ...+..|++..|.|. +++.|+.|. .|.+|++++      
T Consensus       397 ~v~f~~~g~-~llssSLDGtVRAwDlkRYrN-fRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qT------  467 (893)
T KOG0291|consen  397 AVQFTARGN-VLLSSSLDGTVRAWDLKRYRN-FRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQT------  467 (893)
T ss_pred             EEEEEecCC-EEEEeecCCeEEeeeecccce-eeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeec------
Confidence            999999998 588999999999999998887 566654 345678899999998 466666664 699999999      


Q ss_pred             cccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         811 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       811 ~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                              ++++-.+.||.++|.+++|+|+|. +++++|.|.+||+
T Consensus       468 --------GqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRi  504 (893)
T KOG0291|consen  468 --------GQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRI  504 (893)
T ss_pred             --------CeeeehhcCCCCcceeeEEccccC-eEEeccccceEEE
Confidence                    456677889999999999999999 7999999999996

>KOG0285|consensus

Probab=99.86  E-value=8.7e-21  Score=195.59  Aligned_cols=233  Identities=24%  Similarity=0.379  Sum_probs=195.2

Q ss_pred             ccceeeeeeecceeecccceeEEEEeeccchhhhhhhh-hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccC
Q psy4578         581 DLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLL-DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKP  659 (860)
Q Consensus       581 D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~-~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~  659 (860)
                      .+..++..-....+..++.....+-+|+...+++...+ +|...|..+++++ --.++++++.|+.|+.||++.   .+.
T Consensus       152 gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~---nkv  227 (460)
T KOG0285|consen  152 GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEY---NKV  227 (460)
T ss_pred             ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechh---hhh
Confidence            33333333333444455566667788888888876655 5788999999997 677899999999999999998   466


Q ss_pred             eeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC
Q psy4578         660 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  739 (860)
Q Consensus       660 ~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~  739 (860)
                      ++.+.+|-..|.|++.+|.-+ ++++|+.|.+               +++||+++.   ..+..+.||+..|.++.+.|.
T Consensus       228 IR~YhGHlS~V~~L~lhPTld-vl~t~grDst---------------~RvWDiRtr---~~V~~l~GH~~~V~~V~~~~~  288 (460)
T KOG0285|consen  228 IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDST---------------IRVWDIRTR---ASVHVLSGHTNPVASVMCQPT  288 (460)
T ss_pred             HHHhccccceeEEEeccccce-eEEecCCcce---------------EEEeeeccc---ceEEEecCCCCcceeEEeecC
Confidence            888999999999999999888 6999999999               999999997   788899999999999999998


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCC
Q psy4578         740 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP  819 (860)
Q Consensus       740 g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~  819 (860)
                      ... ++|||.|++|++||++.++. ...+..|...|.+++.+|... ++++++.| .|+-|++..+.             
T Consensus       289 dpq-vit~S~D~tvrlWDl~agkt-~~tlt~hkksvral~lhP~e~-~fASas~d-nik~w~~p~g~-------------  351 (460)
T KOG0285|consen  289 DPQ-VITGSHDSTVRLWDLRAGKT-MITLTHHKKSVRALCLHPKEN-LFASASPD-NIKQWKLPEGE-------------  351 (460)
T ss_pred             CCc-eEEecCCceEEEeeeccCce-eEeeecccceeeEEecCCchh-hhhccCCc-cceeccCCccc-------------
Confidence            885 88999999999999999998 778888999999999999885 47788766 79999998743             


Q ss_pred             ccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         820 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       820 ~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                       .+..+.+|.+-|.+++.+.||-  +++|+++|++.+
T Consensus       352 -f~~nlsgh~~iintl~~nsD~v--~~~G~dng~~~f  385 (460)
T KOG0285|consen  352 -FLQNLSGHNAIINTLSVNSDGV--LVSGGDNGSIMF  385 (460)
T ss_pred             -hhhccccccceeeeeeeccCce--EEEcCCceEEEE
Confidence             4455678999999999999985  668888888764

>KOG0296|consensus

Probab=99.86  E-value=3.9e-20  Score=191.90  Aligned_cols=218  Identities=21%  Similarity=0.423  Sum_probs=175.8

Q ss_pred             hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         612 AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       612 ~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      ..+..+..|.++|.+++.+| +.++++||+.|..-.+|++.++.   ....+.+|...|+++.|+.+|. ++|||+.+|.
T Consensus        55 dS~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge---~~~eltgHKDSVt~~~Fshdgt-lLATGdmsG~  129 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGT-LLATGDMSGK  129 (399)
T ss_pred             cceeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCce-EEEecCCCcc
Confidence            34566778899999999999 89999999999999999999964   5677889999999999999998 4999999999


Q ss_pred             eeeeccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEE
Q psy4578         692 QFEVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  744 (860)
Q Consensus       692 i~~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~ll  744 (860)
                      +++|.....                           +..||.+.+|.+.++   .....+.+|..++++-.|.|+|+. +
T Consensus       130 v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~---~~~kv~~Gh~~~ct~G~f~pdGKr-~  205 (399)
T KOG0296|consen  130 VLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ---ALCKVMSGHNSPCTCGEFIPDGKR-I  205 (399)
T ss_pred             EEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc---ceeeEecCCCCCcccccccCCCce-E
Confidence            999876654                           467999999999886   567788999999999999999996 8


Q ss_pred             EEeeCCCcEEEEeCCCCceeeEEec-------------------------------------------------------
Q psy4578         745 ATGSADKTVALWDLRNLKLKLHSFE-------------------------------------------------------  769 (860)
Q Consensus       745 asgs~Dg~I~IWDl~~~~~~~~~~~-------------------------------------------------------  769 (860)
                      ++|..||+|++||..++... ....                                                       
T Consensus       206 ~tgy~dgti~~Wn~ktg~p~-~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~  284 (399)
T KOG0296|consen  206 LTGYDDGTIIVWNPKTGQPL-HKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEE  284 (399)
T ss_pred             EEEecCceEEEEecCCCcee-EEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchh
Confidence            89999999999998876431 1111                                                       


Q ss_pred             ----------------------------------------cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578         770 ----------------------------------------SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  809 (860)
Q Consensus       770 ----------------------------------------~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~  809 (860)
                                                              .|...|..+.|-+ ..+ |++++.||.|+.||.++     
T Consensus       285 ~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~-l~t~c~~g~v~~wDaRt-----  357 (399)
T KOG0296|consen  285 LDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDY-LLTACANGKVRQWDART-----  357 (399)
T ss_pred             hhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cch-heeeccCceEEeeeccc-----
Confidence                                                    1334444455544 222 44555555555555554     


Q ss_pred             ccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         810 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       810 ~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                               +++++.+.||...|.+++.+|+++ +++|+|+|++.+|
T Consensus       358 ---------G~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~V  394 (399)
T KOG0296|consen  358 ---------GQLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALV  394 (399)
T ss_pred             ---------cceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEE
Confidence                     567888999999999999999999 6889999999876

>KOG0318|consensus

Probab=99.85  E-value=7.4e-20  Score=197.19  Aligned_cols=242  Identities=19%  Similarity=0.325  Sum_probs=182.0

Q ss_pred             Eeeccchhhhhhhh-hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEE
Q psy4578         605 YLENKTRAQICQLL-DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  683 (860)
Q Consensus       605 ~l~n~~~~~l~~l~-~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ll  683 (860)
                      +..+.........+ .|...++-..++| .+.++|+|...|+|||||....+. -....++...++|.+++|+.+++.++
T Consensus        42 ~ir~i~~~~~~~iYtEH~~~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~h-iLKnef~v~aG~I~Di~Wd~ds~RI~  119 (603)
T KOG0318|consen   42 IIRNIDNPASVDIYTEHAHQVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEH-ILKNEFQVLAGPIKDISWDFDSKRIA  119 (603)
T ss_pred             EEEECCCccceeeeccccceeEEEEeCC-CceEEeecCCcCcEEEEeccCcce-eeeeeeeecccccccceeCCCCcEEE
Confidence            33444444444444 4556678888999 688999999999999999875321 22334556678999999999999988


Q ss_pred             EEEeCCC---ceeeeccccc--------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEE
Q psy4578         684 ATGSADK---TQFEVEEEEE--------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCL  734 (860)
Q Consensus       684 asgs~Dg---~i~~~~~~~~--------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl  734 (860)
                      ++|-..+   .++.|+...+                          ++.|+.|.+|+-..-   +-..++..|..-|.|+
T Consensus       120 avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF---KFk~s~r~HskFV~~V  196 (603)
T KOG0318|consen  120 AVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF---KFKSSFREHSKFVNCV  196 (603)
T ss_pred             EEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe---eeeecccccccceeeE
Confidence            8774332   3455554433                          234555666543321   3344667799999999


Q ss_pred             EEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec---cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578         735 SFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE---SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       735 ~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~---~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                      .|+|||.. +||++.||.|.+||-.+++. +..+.   +|.+.|.+++|+||+.. ++|++.|.+++|||+.+.+..+.+
T Consensus       197 RysPDG~~-Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~  273 (603)
T KOG0318|consen  197 RYSPDGSR-FATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTW  273 (603)
T ss_pred             EECCCCCe-EEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEe
Confidence            99999995 99999999999999999987 77777   89999999999999997 889999999999999987765544


Q ss_pred             cccc-----------------------------CCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         812 EDAE-----------------------------DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       812 ~~~~-----------------------------~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      ....                             .....+.....||...|+++..++++.+ +.+|+.||.|.
T Consensus       274 ~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~-i~SgsyDG~I~  345 (603)
T KOG0318|consen  274 PMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT-IYSGSYDGHIN  345 (603)
T ss_pred             ecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE-EEeeccCceEE
Confidence            3211                             1233356667799999999999999986 66999999874

>KOG0319|consensus

Probab=99.85  E-value=2.6e-20  Score=207.84  Aligned_cols=214  Identities=23%  Similarity=0.435  Sum_probs=178.5

Q ss_pred             ccchhhhhhhhhcccceeeeE-eeccCCcEEEEEeCCCcEEEEEcCCC-CcccCeeeccCCCCCeeEEEEccCCCeEEEE
Q psy4578         608 NKTRAQICQLLDKLRLLIDVA-WHLLHESLFGSVADDQKLMIWDTRSH-NVSKPSHTVDAHTAEVNCLSFNPYSEYILAT  685 (860)
Q Consensus       608 n~~~~~l~~l~~~~~~V~~v~-~sp~~~~~lasgs~DG~I~IWd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~g~~llas  685 (860)
                      +..+....-+.+|...|.++. |+  .+.+|+||+.|.++++|.++++ ....++....+|.+.|.+++++..+..+|++
T Consensus       352 ~~~~~~c~ii~GH~e~vlSL~~~~--~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvs  429 (775)
T KOG0319|consen  352 TLPTSYCQIIPGHTEAVLSLDVWS--SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVS  429 (775)
T ss_pred             ecCCCceEEEeCchhheeeeeecc--cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEE
Confidence            333333334567788899999 54  4689999999999999988432 2234566778999999999999988889999


Q ss_pred             EeCCCceeeecccccccCCCcEEEEeCCCCCC--CCCe----eeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578         686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNV--SKPS----HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR  759 (860)
Q Consensus       686 gs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~--~~~~----~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~  759 (860)
                      +|.|++               +++|++...+.  ....    .+...|...|+|++.+|+.. ++||||.|.+.+||++.
T Consensus       430 vS~D~t---------------lK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le  493 (775)
T KOG0319|consen  430 VSQDCT---------------LKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLE  493 (775)
T ss_pred             ecCCce---------------EEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeeccc
Confidence            999999               99999876221  1112    24467999999999999998 79999999999999999


Q ss_pred             CCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc
Q psy4578         760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP  839 (860)
Q Consensus       760 ~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp  839 (860)
                      .... ...+.+|...|+++.|+|... +++||+.|++|+||.+.+.              .++.++.||...|..+.|-.
T Consensus       494 ~~~l-~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~f--------------SClkT~eGH~~aVlra~F~~  557 (775)
T KOG0319|consen  494 QLRL-LGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTF--------------SCLKTFEGHTSAVLRASFIR  557 (775)
T ss_pred             CceE-EEEeeCCccceEEEEeccccc-eeEeccCCceEEEEEeccc--------------eeeeeecCccceeEeeeeee
Confidence            7776 889999999999999999887 6999999999999999984              45677789999999999999


Q ss_pred             CCCeEEEEEeCCCeEee
Q psy4578         840 NEPWVICSVSEDNIMQK  856 (860)
Q Consensus       840 dg~~Llasgs~Dg~IrI  856 (860)
                      +|.. +++++.||.+++
T Consensus       558 ~~~q-liS~~adGliKl  573 (775)
T KOG0319|consen  558 NGKQ-LISAGADGLIKL  573 (775)
T ss_pred             CCcE-EEeccCCCcEEE
Confidence            9996 669999999986

>KOG0316|consensus

Probab=99.85  E-value=2.6e-20  Score=182.65  Aligned_cols=200  Identities=20%  Similarity=0.317  Sum_probs=171.2

Q ss_pred             hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578         613 QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ  692 (860)
Q Consensus       613 ~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i  692 (860)
                      ++..+-.+.+.|..+.|+- ++++.++|+.|.+|++|+...   ...+.++.+|...|..++.+.|+.. |++|+.|.. 
T Consensus         9 r~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~r---g~liktYsghG~EVlD~~~s~Dnsk-f~s~GgDk~-   82 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLR---GALIKTYSGHGHEVLDAALSSDNSK-FASCGGDKA-   82 (307)
T ss_pred             hceeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccc---cceeeeecCCCceeeeccccccccc-cccCCCCce-
Confidence            3344456678999999997 899999999999999999987   4678999999999999999998886 899999988 


Q ss_pred             eeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-eeEEeccC
Q psy4578         693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-KLHSFESH  771 (860)
Q Consensus       693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~h  771 (860)
                                    +.+||+.++   +....+.+|.+.|+.+.|+.+.. ++++|+.|.++++||.++... +++.+...
T Consensus        83 --------------v~vwDV~TG---kv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea  144 (307)
T KOG0316|consen   83 --------------VQVWDVNTG---KVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEA  144 (307)
T ss_pred             --------------EEEEEcccC---eeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhh
Confidence                          999999998   77888999999999999999888 799999999999999997653 57777778


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D  851 (860)
                      ...|.++..+.   +.+++|+.||+++.||++.+....                .....+|++++|+++|+..+ .++-|
T Consensus       145 ~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~s----------------Dy~g~pit~vs~s~d~nc~L-a~~l~  204 (307)
T KOG0316|consen  145 KDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSS----------------DYFGHPITSVSFSKDGNCSL-ASSLD  204 (307)
T ss_pred             cCceeEEEecc---cEEEeeccCCcEEEEEeecceeeh----------------hhcCCcceeEEecCCCCEEE-Eeecc
Confidence            88999998864   348899999999999999854321                12356899999999999755 78889


Q ss_pred             CeEee
Q psy4578         852 NIMQK  856 (860)
Q Consensus       852 g~IrI  856 (860)
                      +++|+
T Consensus       205 stlrL  209 (307)
T KOG0316|consen  205 STLRL  209 (307)
T ss_pred             ceeee
Confidence            99886

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.85  E-value=2.1e-19  Score=190.22  Aligned_cols=214  Identities=30%  Similarity=0.507  Sum_probs=172.4

Q ss_pred             EEEEeeccchh-hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         602 EVMYLENKTRA-QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       602 ~il~l~n~~~~-~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      ..+.+|+.... .......+...+.++.|++ ++.++++++.||.|.+||+.++   +....+..|...+.++.|+|++.
T Consensus        73 ~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~  148 (289)
T cd00200          73 KTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETG---KCLTTLRGHTDWVNSVAFSPDGT  148 (289)
T ss_pred             CeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCc---EEEEEeccCCCcEEEEEEcCcCC
Confidence            34555665553 3344445666899999998 5778888888999999999863   44566668889999999999977


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN  760 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~  760 (860)
                       ++++++.+|.               +++||++++   .....+..|...+.+++|+|++.. +++++.||.|++||++.
T Consensus       149 -~l~~~~~~~~---------------i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         149 -FVASSSQDGT---------------IKLWDLRTG---KCVATLTGHTGEVNSVAFSPDGEK-LLSSSSDGTIKLWDLST  208 (289)
T ss_pred             -EEEEEcCCCc---------------EEEEEcccc---ccceeEecCccccceEEECCCcCE-EEEecCCCcEEEEECCC
Confidence             4777777888               999999876   455667788889999999999985 77777899999999998


Q ss_pred             CceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccC
Q psy4578         761 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN  840 (860)
Q Consensus       761 ~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd  840 (860)
                      +.. ...+..|...+.+++|+|++. ++++++.||.|++||+.+.              .....+.+|...|.+++|+++
T Consensus       209 ~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~--------------~~~~~~~~~~~~i~~~~~~~~  272 (289)
T cd00200         209 GKC-LGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTG--------------ECVQTLSGHTNSVTSLAWSPD  272 (289)
T ss_pred             Cce-ecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCc--------------eeEEEccccCCcEEEEEECCC
Confidence            775 677778889999999999965 5777777999999999863              234445578889999999999


Q ss_pred             CCeEEEEEeCCCeEee
Q psy4578         841 EPWVICSVSEDNIMQK  856 (860)
Q Consensus       841 g~~Llasgs~Dg~IrI  856 (860)
                      +. .+++++.|+.+++
T Consensus       273 ~~-~l~~~~~d~~i~i  287 (289)
T cd00200         273 GK-RLASGSADGTIRI  287 (289)
T ss_pred             CC-EEEEecCCCeEEe
Confidence            88 4778999998876

>KOG0310|consensus

Probab=99.85  E-value=1e-19  Score=195.17  Aligned_cols=231  Identities=19%  Similarity=0.299  Sum_probs=184.2

Q ss_pred             ccceeeeeeecceeecccceeEEEEeecc-chhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccC
Q psy4578         581 DLKLFLNFFKQGYFKGTHHIEEVMYLENK-TRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKP  659 (860)
Q Consensus       581 D~~l~~~ll~~G~~~Gs~~l~~il~l~n~-~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~  659 (860)
                      ++...+.++++|...|.      +.+.+. .+.-+..+..|..+|..+.|+|+++..|++|+.|+.+++||+.+..   .
T Consensus        75 ~fR~DG~LlaaGD~sG~------V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v  145 (487)
T KOG0310|consen   75 DFRSDGRLLAAGDESGH------VKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---V  145 (487)
T ss_pred             EeecCCeEEEccCCcCc------EEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---E
Confidence            44444556666654443      333333 3445666777889999999999999999999999999999999853   3


Q ss_pred             eeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC
Q psy4578         660 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  739 (860)
Q Consensus       660 ~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~  739 (860)
                      ...+.+|+..|.|.+|+|..+++++|||.||.               |++||++...  ..+..+ .|..+|.++.+-|.
T Consensus       146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~---------------vrl~DtR~~~--~~v~el-nhg~pVe~vl~lps  207 (487)
T KOG0310|consen  146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGK---------------VRLWDTRSLT--SRVVEL-NHGCPVESVLALPS  207 (487)
T ss_pred             EEEecCCcceeEeeccccCCCeEEEecCCCce---------------EEEEEeccCC--ceeEEe-cCCCceeeEEEcCC
Confidence            55788999999999999999999999999999               9999999863  334444 48999999999999


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCC
Q psy4578         740 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP  819 (860)
Q Consensus       740 g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~  819 (860)
                      |. ++|+++. +.|++||+.++...+..+..|...|+|+++..++.. |++||-||.+++||+.+.+             
T Consensus       208 gs-~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~r-LlS~sLD~~VKVfd~t~~K-------------  271 (487)
T KOG0310|consen  208 GS-LIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTR-LLSGSLDRHVKVFDTTNYK-------------  271 (487)
T ss_pred             CC-EEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCce-EeecccccceEEEEccceE-------------
Confidence            88 5777764 689999999776656666679999999999999976 8899999999999977733             


Q ss_pred             ccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeec
Q psy4578         820 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKP  857 (860)
Q Consensus       820 ~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~  857 (860)
                       .++.. ...++|.+++.+|+++. ++.|..||.+-+.
T Consensus       272 -vv~s~-~~~~pvLsiavs~dd~t-~viGmsnGlv~~r  306 (487)
T KOG0310|consen  272 -VVHSW-KYPGPVLSIAVSPDDQT-VVIGMSNGLVSIR  306 (487)
T ss_pred             -EEEee-ecccceeeEEecCCCce-EEEecccceeeee
Confidence             23333 35789999999999985 6677788877654

>KOG0772|consensus

Probab=99.84  E-value=5.4e-20  Score=197.51  Aligned_cols=213  Identities=22%  Similarity=0.343  Sum_probs=166.9

Q ss_pred             hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc-cCeee--ccCCCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578         614 ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS-KPSHT--VDAHTAEVNCLSFNPYSEYILATGSADK  690 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~-~~~~~--~~~h~~~V~~l~~sp~g~~llasgs~Dg  690 (860)
                      +..+.+|...++|.+|+|.+...|+|++.||++|+||+...... +.+.+  ..+..-++++++|+++|.. +|+|+.||
T Consensus       261 m~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DG  339 (641)
T KOG0772|consen  261 MYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDG  339 (641)
T ss_pred             hhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCC
Confidence            45567888899999999999999999999999999999864321 11111  1234457899999999995 99999999


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCC--CeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA--EVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF  768 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~--~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~  768 (860)
                      +               |.+|+..+.........-.+|..  .|+|+.||++|++ |++-+.|+++++||++..+.++...
T Consensus       340 S---------------IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~kkpL~~~  403 (641)
T KOG0772|consen  340 S---------------IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFKKPLNVR  403 (641)
T ss_pred             c---------------eeeeecCCcccccceEeeeccCCCCceeEEEeccccch-hhhccCCCceeeeeccccccchhhh
Confidence            9               99999866544334445567877  8999999999996 8899999999999999988777766


Q ss_pred             ccCC--CceEEEEEcCCCCCEEEEEE------CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccC
Q psy4578         769 ESHK--DEIFQVQWSPHNETILASSG------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN  840 (860)
Q Consensus       769 ~~h~--~~V~~l~fsp~g~~lL~tgs------~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd  840 (860)
                      .+-.  -+-+.++|||+.+ +++||+      ..|.+.+||..+....              +.+.-....|..+.|+|.
T Consensus       404 tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v--------------~ki~i~~aSvv~~~Whpk  468 (641)
T KOG0772|consen  404 TGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTV--------------YKIDISTASVVRCLWHPK  468 (641)
T ss_pred             cCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeE--------------EEecCCCceEEEEeecch
Confidence            6533  3567899999998 577886      3478999998885443              333344678999999998


Q ss_pred             CCeEEEEEeCCCeEeeccC
Q psy4578         841 EPWVICSVSEDNIMQKPFK  859 (860)
Q Consensus       841 g~~Llasgs~Dg~IrI~f~  859 (860)
                      -+.++ .|+.||.++|-|.
T Consensus       469 LNQi~-~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  469 LNQIF-AGSGDGTAHVYYD  486 (641)
T ss_pred             hhhee-eecCCCceEEEEC
Confidence            88645 6777799999885

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.84  E-value=2.8e-19  Score=220.48  Aligned_cols=230  Identities=22%  Similarity=0.289  Sum_probs=172.8

Q ss_pred             eEEEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578         601 EEVMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       601 ~~il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  679 (860)
                      ...+.+|+....+ +..+.+|.+.|++++|+|.++.+|++|+.||+|++||+.++   ..+..+..+ ..+.++.|++.+
T Consensus       554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~---~~~~~~~~~-~~v~~v~~~~~~  629 (793)
T PLN00181        554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG---VSIGTIKTK-ANICCVQFPSES  629 (793)
T ss_pred             CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC---cEEEEEecC-CCeEEEEEeCCC
Confidence            3345666655444 44455677889999999877899999999999999999874   334555443 679999996543


Q ss_pred             CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578         680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR  759 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~  759 (860)
                      ...+++|+.||.               |++||+++..  ..+..+.+|...|+++.|. ++. .+++|+.|++|++||++
T Consensus       630 g~~latgs~dg~---------------I~iwD~~~~~--~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        630 GRSLAFGSADHK---------------VYYYDLRNPK--LPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             CCEEEEEeCCCe---------------EEEEECCCCC--ccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCC
Confidence            346999999998               9999998752  2456778999999999997 566 48899999999999997


Q ss_pred             CCc-----eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578         760 NLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  834 (860)
Q Consensus       760 ~~~-----~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~  834 (860)
                      ...     ..+..+.+|...+.+++|+|++.+ |++|+.||.|++|+................ ...-.....|...|.+
T Consensus       691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~-lasgs~D~~v~iw~~~~~~~~~s~~~~~~~-~~~~~~~~~~~~~V~~  768 (793)
T PLN00181        691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGY-IATGSETNEVFVYHKAFPMPVLSYKFKTID-PVSGLEVDDASQFISS  768 (793)
T ss_pred             CCccccCCcceEEEcCCCCCeeEEEEcCCCCE-EEEEeCCCEEEEEECCCCCceEEEecccCC-cccccccCCCCcEEEE
Confidence            531     236788999999999999999984 999999999999997754322111100000 0000112356678999


Q ss_pred             EEEccCCCeEEEEEeCCCeEee
Q psy4578         835 FSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       835 i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++|+|++.. +++|+.||.|+|
T Consensus       769 v~ws~~~~~-lva~~~dG~I~i  789 (793)
T PLN00181        769 VCWRGQSST-LVAANSTGNIKI  789 (793)
T ss_pred             EEEcCCCCe-EEEecCCCcEEE
Confidence            999999995 778888999886

>KOG0640|consensus

Probab=99.84  E-value=1.8e-20  Score=189.93  Aligned_cols=261  Identities=18%  Similarity=0.315  Sum_probs=193.2

Q ss_pred             cccccceeeeeeecceeecccceeEEEEee----------c---cchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCC
Q psy4578         578 TQEDLKLFLNFFKQGYFKGTHHIEEVMYLE----------N---KTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQ  644 (860)
Q Consensus       578 ~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~----------n---~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG  644 (860)
                      ....++..+.+++.|..+.+..+-++-..-          +   .....+..+++|-+.|+++.|+| ...+|++|+.|+
T Consensus       116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~ILiS~srD~  194 (430)
T KOG0640|consen  116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETILISGSRDN  194 (430)
T ss_pred             eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhheEEeccCCC
Confidence            344566666677777655554432221000          0   01133566788999999999999 789999999999


Q ss_pred             cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee
Q psy4578         645 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV  724 (860)
Q Consensus       645 ~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~  724 (860)
                      +|++||+......+-...+ ....+|.++.|+|.|.+ +++|....+               +++||+.+-++......-
T Consensus       195 tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGef-llvgTdHp~---------------~rlYdv~T~QcfvsanPd  257 (430)
T KOG0640|consen  195 TVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEF-LLVGTDHPT---------------LRLYDVNTYQCFVSANPD  257 (430)
T ss_pred             eEEEEecccHHHHHHHHHh-hccceeeeEeecCCCce-EEEecCCCc---------------eeEEeccceeEeeecCcc
Confidence            9999999864433323333 34678999999999996 788888777               999999987554444455


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe-ccCC-CceEEEEEcCCCCCEEEEEECCCcEEEEEC
Q psy4578         725 DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF-ESHK-DEIFQVQWSPHNETILASSGTDRRLHVWDL  802 (860)
Q Consensus       725 ~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~-~~h~-~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl  802 (860)
                      ..|++.|+++.+++.|+ +.+||+.||.|++||--+.++ +.++ .+|. ..|.+..|..+|++ +++.|.|..+++|.+
T Consensus       258 ~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rC-v~t~~~AH~gsevcSa~Ftkn~ky-iLsSG~DS~vkLWEi  334 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRC-VRTIGNAHGGSEVCSAVFTKNGKY-ILSSGKDSTVKLWEI  334 (430)
T ss_pred             cccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHH-HHHHHhhcCCceeeeEEEccCCeE-EeecCCcceeeeeee
Confidence            67999999999999999 699999999999999988887 5444 3565 47899999999997 679999999999999


Q ss_pred             CCCCcccccccccC------------------------CC-----------CccEEEecCccCceEEEEEccCCCeEEEE
Q psy4578         803 SKIGEEQSTEDAED------------------------GP-----------PELLFIHGGHTAKISDFSWNPNEPWVICS  847 (860)
Q Consensus       803 ~~~~~~~~~~~~~~------------------------~~-----------~~~i~~~~~h~~~I~~i~~spdg~~Llas  847 (860)
                      .++...........                        ..           .+...-..||.+.+..+.-||.++ .+.+
T Consensus       335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p-~FmT  413 (430)
T KOG0640|consen  335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP-AFMT  413 (430)
T ss_pred             cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-ceee
Confidence            98776654322210                        00           001111238999999999999999 5779


Q ss_pred             EeCCCeEeeccCC
Q psy4578         848 VSEDNIMQKPFKK  860 (860)
Q Consensus       848 gs~Dg~IrI~f~k  860 (860)
                      ||+|...|+=|++
T Consensus       414 csdD~raRFWyrr  426 (430)
T KOG0640|consen  414 CSDDFRARFWYRR  426 (430)
T ss_pred             ecccceeeeeeec
Confidence            9999998886653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.84  E-value=6.5e-19  Score=186.43  Aligned_cols=213  Identities=29%  Similarity=0.471  Sum_probs=170.4

Q ss_pred             EEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .+.+|+..... ......+...+.++.|+| +++.+++++.||.|++|++.++   .....+..|...+.++.|++++. 
T Consensus        32 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-  106 (289)
T cd00200          32 TIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETG---ECVRTLTGHTSYVSSVAFSPDGR-  106 (289)
T ss_pred             EEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcc---cceEEEeccCCcEEEEEEcCCCC-
Confidence            34455554443 333445667788999998 5688999999999999999874   44566678888999999999876 


Q ss_pred             EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCC
Q psy4578         682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL  761 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~  761 (860)
                      ++++++.+|.               +.+||+.+.   .....+..|...+.+++|+|++. ++++++.||.|++||+++.
T Consensus       107 ~~~~~~~~~~---------------i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~  167 (289)
T cd00200         107 ILSSSSRDKT---------------IKVWDVETG---KCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTG  167 (289)
T ss_pred             EEEEecCCCe---------------EEEEECCCc---EEEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEcccc
Confidence            5777777887               999999865   55666778999999999999977 4778878999999999987


Q ss_pred             ceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCC
Q psy4578         762 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE  841 (860)
Q Consensus       762 ~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg  841 (860)
                      .. ...+..|...+.+++|+|+++. +++++.||.|++||++...              .+.....|...|.+++|++++
T Consensus       168 ~~-~~~~~~~~~~i~~~~~~~~~~~-l~~~~~~~~i~i~d~~~~~--------------~~~~~~~~~~~i~~~~~~~~~  231 (289)
T cd00200         168 KC-VATLTGHTGEVNSVAFSPDGEK-LLSSSSDGTIKLWDLSTGK--------------CLGTLRGHENGVNSVAFSPDG  231 (289)
T ss_pred             cc-ceeEecCccccceEEECCCcCE-EEEecCCCcEEEEECCCCc--------------eecchhhcCCceEEEEEcCCC
Confidence            76 6777788889999999999975 7788889999999998733              233344677899999999996


Q ss_pred             CeEEEEEeCCCeEee
Q psy4578         842 PWVICSVSEDNIMQK  856 (860)
Q Consensus       842 ~~Llasgs~Dg~IrI  856 (860)
                      . ++++++.|+.+++
T Consensus       232 ~-~~~~~~~~~~i~i  245 (289)
T cd00200         232 Y-LLASGSEDGTIRV  245 (289)
T ss_pred             c-EEEEEcCCCcEEE
Confidence            6 6778877887775

>KOG0281|consensus

Probab=99.84  E-value=4.4e-21  Score=196.72  Aligned_cols=204  Identities=21%  Similarity=0.387  Sum_probs=174.8

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      ....|.|+.+.   +..+++|..|.+|+|||..+   ..+...+.||.+.|.|+.|+.   .++++|+.|.+|.+|+..+
T Consensus       196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~n~---~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDKNS---LECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT  266 (499)
T ss_pred             cCCceEEEEec---chhhhcccccCceEEecccc---HHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC
Confidence            44679999885   56789999999999999988   566788899999999999964   3899999999999999877


Q ss_pred             c-------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEE
Q psy4578         700 E-------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA  754 (860)
Q Consensus       700 ~-------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~  754 (860)
                      .                         .+.|..+.+||+...........+.||.+.|+.+.|+.  + +++++|.|.+|+
T Consensus       267 ge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k-yIVsASgDRTik  343 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K-YIVSASGDRTIK  343 (499)
T ss_pred             CchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c-eEEEecCCceEE
Confidence            5                         24688899999988754455567789999999999974  4 499999999999


Q ss_pred             EEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578         755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  834 (860)
Q Consensus       755 IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~  834 (860)
                      +|++.+... +..+.+|...|-|+.+.  |+ ++++|+.|.+|++||+..+              .++..+.||+.-|.+
T Consensus       344 vW~~st~ef-vRtl~gHkRGIAClQYr--~r-lvVSGSSDntIRlwdi~~G--------------~cLRvLeGHEeLvRc  405 (499)
T KOG0281|consen  344 VWSTSTCEF-VRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECG--------------ACLRVLEGHEELVRC  405 (499)
T ss_pred             EEeccceee-ehhhhcccccceehhcc--Ce-EEEecCCCceEEEEecccc--------------HHHHHHhchHHhhhh
Confidence            999999997 89999999999888875  55 6999999999999999984              456667799999999


Q ss_pred             EEEccCCCeEEEEEeCCCeEee
Q psy4578         835 FSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       835 i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +.|+..   -+++|+.||.|+|
T Consensus       406 iRFd~k---rIVSGaYDGkikv  424 (499)
T KOG0281|consen  406 IRFDNK---RIVSGAYDGKIKV  424 (499)
T ss_pred             eeecCc---eeeeccccceEEE
Confidence            999753   2779999999997

>KOG0268|consensus

Probab=99.84  E-value=1.3e-20  Score=195.01  Aligned_cols=217  Identities=21%  Similarity=0.308  Sum_probs=182.1

Q ss_pred             hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         614 ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      +.++.+|.+.|.|++=+|..-..+++|+.||.|++||+.+   ..+..++..|.+.|..|++.. +  -++++++|.++.
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq---R~~~~~f~AH~G~V~Gi~v~~-~--~~~tvgdDKtvK  132 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ---RECIRTFKAHEGLVRGICVTQ-T--SFFTVGDDKTVK  132 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhh---hhhhheeecccCceeeEEecc-c--ceEEecCCccee
Confidence            4456678889999999995557899999999999999987   466788999999999999987 3  378888999999


Q ss_pred             eeccccc-----------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC
Q psy4578         694 EVEEEEE-----------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD  750 (860)
Q Consensus       694 ~~~~~~~-----------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D  750 (860)
                      .|..+..                       ...+..|.|||....   .++..+......|.++.|+|....+|++|+.|
T Consensus       133 ~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~---~Pv~smswG~Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  133 QWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRD---NPVSSMSWGADSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             eeeccCCcceeeeccccccccccccccccccccCceeeecccccC---CccceeecCCCceeEEecCCCcchheeeeccC
Confidence            9985432                       234557999999765   67777877888999999999999999999999


Q ss_pred             CcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccC
Q psy4578         751 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA  830 (860)
Q Consensus       751 g~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~  830 (860)
                      ++|.+||++.... ++... -...-+.++|+|.+ +.+++|+.|..++.+|++...             .++..+.+|.+
T Consensus       210 rsIvLyD~R~~~P-l~KVi-~~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~-------------~p~~v~~dhvs  273 (433)
T KOG0268|consen  210 RSIVLYDLRQASP-LKKVI-LTMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLS-------------RPLNVHKDHVS  273 (433)
T ss_pred             CceEEEecccCCc-cceee-eeccccceecCccc-cceeeccccccceehhhhhhc-------------ccchhhcccce
Confidence            9999999999886 44433 23456789999966 468999999999999999854             45677889999


Q ss_pred             ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         831 KISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       831 ~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .|.+++|||.|+- +++||.|.+|||
T Consensus       274 AV~dVdfsptG~E-fvsgsyDksIRI  298 (433)
T KOG0268|consen  274 AVMDVDFSPTGQE-FVSGSYDKSIRI  298 (433)
T ss_pred             eEEEeccCCCcch-hccccccceEEE
Confidence            9999999999995 889999999998

>KOG0302|consensus

Probab=99.84  E-value=5.1e-20  Score=191.47  Aligned_cols=227  Identities=27%  Similarity=0.535  Sum_probs=182.6

Q ss_pred             hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         612 AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       612 ~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      ..+...-+|.+.=++++|+|.....+++|.--+.|++|...++.-.--...+.+|...|-.++|||....+|++|+.||+
T Consensus       202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs  281 (440)
T KOG0302|consen  202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS  281 (440)
T ss_pred             CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce
Confidence            34455556777789999999767778999888999999998864333345567899999999999999999999999999


Q ss_pred             eeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc--eeeEEec
Q psy4578         692 QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK--LKLHSFE  769 (860)
Q Consensus       692 i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~--~~~~~~~  769 (860)
                                     |+|||++.+.....+ ..+.|.+.|+.+.|+..-. +||+|+.||+++|||+|..+  .++..++
T Consensus       282 ---------------IrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk  344 (440)
T KOG0302|consen  282 ---------------IRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFK  344 (440)
T ss_pred             ---------------EEEEEecCCCcccee-EeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEE
Confidence                           999999997543333 4489999999999999888 79999999999999999654  3588999


Q ss_pred             cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc-----cccccCCCCccEEEecCccCceEEEEEccCCCeE
Q psy4578         770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS-----TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWV  844 (860)
Q Consensus       770 ~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~-----~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~L  844 (860)
                      -|..+|+++.|+|.....++++|.|.+|.+||+..-.....     ......-++++++.+.| ...|..+.|++.-+-+
T Consensus       345 ~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiPG~  423 (440)
T KOG0302|consen  345 YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIPGL  423 (440)
T ss_pred             eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHhhhheeccCCCCe
Confidence            99999999999998888899999999999999976333111     11122346677777765 4568999999988878


Q ss_pred             EEEEeCCCeEee
Q psy4578         845 ICSVSEDNIMQK  856 (860)
Q Consensus       845 lasgs~Dg~IrI  856 (860)
                      +++.+-||.-.+
T Consensus       424 lvsTa~dGfnVf  435 (440)
T KOG0302|consen  424 LVSTAIDGFNVF  435 (440)
T ss_pred             EEEecccceeEE
Confidence            889998886543

>KOG4283|consensus

Probab=99.83  E-value=6.8e-20  Score=184.76  Aligned_cols=217  Identities=20%  Similarity=0.404  Sum_probs=174.4

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc-------cC-----eeeccCCCCCeeEEEEccCCCeEEEEE
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS-------KP-----SHTVDAHTAEVNCLSFNPYSEYILATG  686 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~-------~~-----~~~~~~h~~~V~~l~~sp~g~~llasg  686 (860)
                      .|.+.|+++...+..+.++++|+.||.|.+||++.....       +.     ...-.+|...|.++.|-|.+.-+|.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            455899999999999999999999999999999753211       00     112356788999999999887789999


Q ss_pred             eCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCC--CcEEEEeeCCCcEEEEeCCCCcee
Q psy4578         687 SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS--EYILATGSADKTVALWDLRNLKLK  764 (860)
Q Consensus       687 s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g--~~llasgs~Dg~I~IWDl~~~~~~  764 (860)
                      +.|.+               +++||.++.   +....+. -.+.|++-+|+|-.  ..++|+|..|-.|++.|+.++.. 
T Consensus       121 SFDht---------------lKVWDtnTl---Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-  180 (397)
T KOG4283|consen  121 SFDHT---------------LKVWDTNTL---QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-  180 (397)
T ss_pred             cccce---------------EEEeecccc---eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-
Confidence            99999               999999986   3333443 46788999999853  35788999999999999999997 


Q ss_pred             eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC-CcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578         765 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI-GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW  843 (860)
Q Consensus       765 ~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~-~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~  843 (860)
                      .+.+.+|...|.++.|+|...++|+||+.||.|++||++.. .+....+.....-++.+..-..|.+.|.+++|+.+|.+
T Consensus       181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~  260 (397)
T KOG4283|consen  181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY  260 (397)
T ss_pred             eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh
Confidence            89999999999999999999999999999999999999986 44444443333333444456789999999999999997


Q ss_pred             EEEEEeCCCeEee
Q psy4578         844 VICSVSEDNIMQK  856 (860)
Q Consensus       844 Llasgs~Dg~IrI  856 (860)
                       +++++.|..+++
T Consensus       261 -l~~~gtd~r~r~  272 (397)
T KOG4283|consen  261 -LASCGTDDRIRV  272 (397)
T ss_pred             -hhhccCccceEE
Confidence             557777766664

>KOG1407|consensus

Probab=99.83  E-value=1.9e-19  Score=179.25  Aligned_cols=237  Identities=22%  Similarity=0.343  Sum_probs=179.7

Q ss_pred             ccceeeeeeecceeecccceeEEEEeeccchh---hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc
Q psy4578         581 DLKLFLNFFKQGYFKGTHHIEEVMYLENKTRA---QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS  657 (860)
Q Consensus       581 D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~---~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~  657 (860)
                      .+...+..++.|.+++..      .+|+..+.   .-....+|.+.|-.++|+|...+.|++++.|.+|++||.+++   
T Consensus        27 ~wn~~g~~lasgs~dktv------~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~---   97 (313)
T KOG1407|consen   27 AWNCDGTKLASGSFDKTV------SVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG---   97 (313)
T ss_pred             EEcccCceeeecccCCce------EEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC---
Confidence            455555566666555543      33443333   333445777899999999999999999999999999999985   


Q ss_pred             cCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc--------------------------ccCCCcEEEEe
Q psy4578         658 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE--------------------------ENYDQKLMIWD  711 (860)
Q Consensus       658 ~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~--------------------------~~~dg~I~iwD  711 (860)
                      ++........ .-.-+.|+|+|.+ +++|+.|..+-..+....                          ..+.|.|.|..
T Consensus        98 k~~~~i~~~~-eni~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILs  175 (313)
T KOG1407|consen   98 KCTARIETKG-ENINITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILS  175 (313)
T ss_pred             cEEEEeeccC-cceEEEEcCCCCE-EEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEe
Confidence            4444443333 3345889999998 677777776555443332                          12335555555


Q ss_pred             CCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEE
Q psy4578         712 TRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS  791 (860)
Q Consensus       712 l~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tg  791 (860)
                      ...   .+++.++++|.....|+.|+|+|++ ||+|+.|-.+-+||+...-+ .+.+..+.-+|+.+.|+.+|++ |++|
T Consensus       176 yps---Lkpv~si~AH~snCicI~f~p~Gry-fA~GsADAlvSLWD~~ELiC-~R~isRldwpVRTlSFS~dg~~-lASa  249 (313)
T KOG1407|consen  176 YPS---LKPVQSIKAHPSNCICIEFDPDGRY-FATGSADALVSLWDVDELIC-ERCISRLDWPVRTLSFSHDGRM-LASA  249 (313)
T ss_pred             ccc---cccccccccCCcceEEEEECCCCce-EeeccccceeeccChhHhhh-heeeccccCceEEEEeccCcce-eecc
Confidence            443   3788899999999999999999997 99999999999999999887 8888889999999999999985 9999


Q ss_pred             ECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         792 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       792 s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      +.|..|-|=++.++.....+               .+.++-..++|+|....|..+|+
T Consensus       250 SEDh~IDIA~vetGd~~~eI---------------~~~~~t~tVAWHPk~~LLAyA~d  292 (313)
T KOG1407|consen  250 SEDHFIDIAEVETGDRVWEI---------------PCEGPTFTVAWHPKRPLLAYACD  292 (313)
T ss_pred             CccceEEeEecccCCeEEEe---------------eccCCceeEEecCCCceeeEEec
Confidence            99999999999997765443               36788899999999885444443

>KOG0302|consensus

Probab=99.83  E-value=1.1e-19  Score=188.99  Aligned_cols=215  Identities=24%  Similarity=0.440  Sum_probs=171.9

Q ss_pred             hhhhhcccceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCC-------------CcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         615 CQLLDKLRLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSH-------------NVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~-------------~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      .....|.+.++.+.-.+. +..+.++=+..|.|.||++...             ...+++.++.+|.+.-..+.|||-..
T Consensus       145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~  224 (440)
T KOG0302|consen  145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT  224 (440)
T ss_pred             ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence            445677788888888775 3456677788999999998521             22467788899999999999999433


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN  760 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~  760 (860)
                      -.+++|..-+.               |++|...++....--..+.+|+..|-.++|||....+|++||.||+|+|||+|.
T Consensus       225 g~LlsGDc~~~---------------I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs  289 (440)
T KOG0302|consen  225 GRLLSGDCVKG---------------IHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS  289 (440)
T ss_pred             cccccCccccc---------------eEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence            33667655555               999988886543444567789999999999999988999999999999999998


Q ss_pred             Cce-eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc
Q psy4578         761 LKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP  839 (860)
Q Consensus       761 ~~~-~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp  839 (860)
                      +.. .....+.|.+.|+.+.|+..-. +|++|++||+++|||++..+.           ..++..+.-|..+|+++.|+|
T Consensus       290 ~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~-----------~~pVA~fk~Hk~pItsieW~p  357 (440)
T KOG0302|consen  290 GPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKS-----------GQPVATFKYHKAPITSIEWHP  357 (440)
T ss_pred             CCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccC-----------CCcceeEEeccCCeeEEEecc
Confidence            832 2344588999999999999887 799999999999999998443           367888899999999999999


Q ss_pred             CCCeEEEEEeCCCeEee
Q psy4578         840 NEPWVICSVSEDNIMQK  856 (860)
Q Consensus       840 dg~~Llasgs~Dg~IrI  856 (860)
                      .....++++|.|..|.|
T Consensus       358 ~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  358 HEDSVIAASGEDNQITI  374 (440)
T ss_pred             ccCceEEeccCCCcEEE
Confidence            77667777777777654

>KOG0306|consensus

Probab=99.83  E-value=2.8e-19  Score=199.52  Aligned_cols=241  Identities=22%  Similarity=0.297  Sum_probs=198.7

Q ss_pred             eeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC
Q psy4578         588 FFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT  667 (860)
Q Consensus       588 ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~  667 (860)
                      +.......++... +.+.+|+....+..+++... .+.+.+|.| +++++++|...|.+.+||+.+.   ..+.+...|.
T Consensus       381 vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~---~l~Eti~AHd  454 (888)
T KOG0306|consen  381 VSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG-YILASKFVP-GDRYIVLGTKNGELQVFDLASA---SLVETIRAHD  454 (888)
T ss_pred             eecCceeeeecCC-CcEEEEEccCcceeEEeccc-cEEEEEecC-CCceEEEeccCCceEEEEeehh---hhhhhhhccc
Confidence            3333333343333 34566777666655555554 889999998 8999999999999999999984   4566777999


Q ss_pred             CCeeEEEEccCCCeEEEEEeCCCceeeeccccc---------------------------------------ccCCCcEE
Q psy4578         668 AEVNCLSFNPYSEYILATGSADKTQFEVEEEEE---------------------------------------ENYDQKLM  708 (860)
Q Consensus       668 ~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~---------------------------------------~~~dg~I~  708 (860)
                      +.+++++.+||+.. +++||.|.+|.+|+....                                       +--|+.|+
T Consensus       455 gaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVk  533 (888)
T KOG0306|consen  455 GAIWSISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVK  533 (888)
T ss_pred             cceeeeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEE
Confidence            99999999999997 999999999999975432                                       01256677


Q ss_pred             EEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEE
Q psy4578         709 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL  788 (860)
Q Consensus       709 iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL  788 (860)
                      ||-+.+-   +...++.||.-+|.|+..+|++. +++|||.|.+|+||-++-+.+ ..++-+|...|.++.|.|... ++
T Consensus       534 VyflDtl---KFflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGDC-HKS~fAHdDSvm~V~F~P~~~-~F  607 (888)
T KOG0306|consen  534 VYFLDTL---KFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDC-HKSFFAHDDSVMSVQFLPKTH-LF  607 (888)
T ss_pred             EEEecce---eeeeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccchh-hhhhhcccCceeEEEEcccce-eE
Confidence            7777765   56677889999999999999999 699999999999999999987 788889999999999999765 68


Q ss_pred             EEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         789 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       789 ~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .|||.||.|+-||-...              ..+..+.+|...|++++.+|+|.+ ++++|.|..||+
T Consensus       608 Ft~gKD~kvKqWDg~kF--------------e~iq~L~~H~~ev~cLav~~~G~~-vvs~shD~sIRl  660 (888)
T KOG0306|consen  608 FTCGKDGKVKQWDGEKF--------------EEIQKLDGHHSEVWCLAVSPNGSF-VVSSSHDKSIRL  660 (888)
T ss_pred             EEecCcceEEeechhhh--------------hhheeeccchheeeeeEEcCCCCe-EEeccCCceeEe
Confidence            99999999999998874              446677799999999999999995 779999999986

>KOG0973|consensus

Probab=99.82  E-value=3.5e-19  Score=207.32  Aligned_cols=214  Identities=23%  Similarity=0.441  Sum_probs=173.2

Q ss_pred             hhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC----C-----------CcccCeeeccCCCCCeeEEEE
Q psy4578         611 RAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS----H-----------NVSKPSHTVDAHTAEVNCLSF  675 (860)
Q Consensus       611 ~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~----~-----------~~~~~~~~~~~h~~~V~~l~~  675 (860)
                      ...+.+...|.+.|+|+.|+| ++.+||+|+.|+.|.||....    .           +.++.+..+.+|.+.|.+++|
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W  137 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW  137 (942)
T ss_pred             chhheeeccccCceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc
Confidence            344566778889999999998 899999999999999999872    0           123467788899999999999


Q ss_pred             ccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEE
Q psy4578         676 NPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL  755 (860)
Q Consensus       676 sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~I  755 (860)
                      +|++. ++++++.|++               |.+||.++.   ..+..+.+|.+.|..+.|.|-|+| ||+-+.|++|++
T Consensus       138 sp~~~-~lvS~s~Dns---------------Viiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gky-~ASqsdDrtikv  197 (942)
T KOG0973|consen  138 SPDDS-LLVSVSLDNS---------------VIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGKY-FASQSDDRTLKV  197 (942)
T ss_pred             CCCcc-EEEEecccce---------------EEEEccccc---eeeeeeecccccccceEECCccCe-eeeecCCceEEE
Confidence            99988 5999999999               999999987   778889999999999999999997 999999999999


Q ss_pred             EeCCCCcee---------------------------------------------------eEEeccCCCceEEEEEcCC-
Q psy4578         756 WDLRNLKLK---------------------------------------------------LHSFESHKDEIFQVQWSPH-  783 (860)
Q Consensus       756 WDl~~~~~~---------------------------------------------------~~~~~~h~~~V~~l~fsp~-  783 (860)
                      |++.+....                                                   -..+.||..++.+++|+|. 
T Consensus       198 wrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~l  277 (942)
T KOG0973|consen  198 WRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKL  277 (942)
T ss_pred             EEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHH
Confidence            996542210                                                   2345679999999999982 


Q ss_pred             -------CC--------CEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578         784 -------NE--------TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       784 -------g~--------~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                             |.        .++++|+.|++|-||.....+.             +...+.-....|.+++|+|||.. |.+|
T Consensus       278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP-------------l~vi~~lf~~SI~DmsWspdG~~-Lfac  343 (942)
T KOG0973|consen  278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP-------------LFVIHNLFNKSIVDMSWSPDGFS-LFAC  343 (942)
T ss_pred             hccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc-------------hhhhhhhhcCceeeeeEcCCCCe-EEEE
Confidence                   11        1789999999999999866322             22223334678999999999995 5688


Q ss_pred             eCCCeEee-ccC
Q psy4578         849 SEDNIMQK-PFK  859 (860)
Q Consensus       849 s~Dg~IrI-~f~  859 (860)
                      |.||+|.+ .|.
T Consensus       344 S~DGtV~~i~Fe  355 (942)
T KOG0973|consen  344 SLDGTVALIHFE  355 (942)
T ss_pred             ecCCeEEEEEcc
Confidence            89988874 553

>KOG0275|consensus

Probab=99.82  E-value=4e-20  Score=188.00  Aligned_cols=203  Identities=21%  Similarity=0.320  Sum_probs=165.1

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe-----eeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS-----HTVDAHTAEVNCLSFNPYSEYILATGSADKTQ  692 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~-----~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i  692 (860)
                      ++..+.+-|..|+| ++.++++|+.||-|-+||..+|+..+-+     ..+--+..+|.|+.|+.|.. .+++|+.||. 
T Consensus       210 Fg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGk-  286 (508)
T KOG0275|consen  210 FGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGK-  286 (508)
T ss_pred             cccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCc-
Confidence            45556788999999 8999999999999999999887543322     22334678999999999988 5999999998 


Q ss_pred             eeecccccccCCCcEEEEeCCCCCCCCCeeeec-CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccC
Q psy4578         693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH  771 (860)
Q Consensus       693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h  771 (860)
                                    |++|.++++   ..+..+. +|+..|+|+.|+.++.. +.+++.|.++++.-+.++++ +..+.+|
T Consensus       287 --------------IKvWri~tG---~ClRrFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKSGK~-LKEfrGH  347 (508)
T KOG0275|consen  287 --------------IKVWRIETG---QCLRRFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKSGKC-LKEFRGH  347 (508)
T ss_pred             --------------EEEEEEecc---hHHHHhhhhhccCeeEEEEccCcch-hhcccccceEEEeccccchh-HHHhcCc
Confidence                          999999998   5555665 89999999999999997 78999999999999999998 8999999


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D  851 (860)
                      .+.|+...|.++|.+ +++++.||+|++|+..+.++...+...            +..-+|.++..-|..+--++.|...
T Consensus       348 sSyvn~a~ft~dG~~-iisaSsDgtvkvW~~KtteC~~Tfk~~------------~~d~~vnsv~~~PKnpeh~iVCNrs  414 (508)
T KOG0275|consen  348 SSYVNEATFTDDGHH-IISASSDGTVKVWHGKTTECLSTFKPL------------GTDYPVNSVILLPKNPEHFIVCNRS  414 (508)
T ss_pred             cccccceEEcCCCCe-EEEecCCccEEEecCcchhhhhhccCC------------CCcccceeEEEcCCCCceEEEEcCC
Confidence            999999999999987 789999999999999998887665422            2334556666555444444455555


Q ss_pred             CeEe
Q psy4578         852 NIMQ  855 (860)
Q Consensus       852 g~Ir  855 (860)
                      +++.
T Consensus       415 ntv~  418 (508)
T KOG0275|consen  415 NTVY  418 (508)
T ss_pred             CeEE
Confidence            5544

>KOG0313|consensus

Probab=99.82  E-value=5.5e-19  Score=184.10  Aligned_cols=236  Identities=22%  Similarity=0.337  Sum_probs=195.4

Q ss_pred             cceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578         598 HHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  677 (860)
Q Consensus       598 ~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp  677 (860)
                      ...-++-|+......+..+.+.|.+-|.++.-.   +..+++|++||.+++||...    +...++.+|.+++.+++|.-
T Consensus        82 E~~leIEYv~~~~aP~pl~~~~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~  154 (423)
T KOG0313|consen   82 EEILEIEYVEAITAPKPLQCFLHDDWVSSVKGA---SKWILTGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVI  154 (423)
T ss_pred             hheeEEEEEEecCCCCccccccchhhhhhhccc---CceEEEeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEe
Confidence            345567788888888888899999999998886   57899999999999999874    66788899999999999964


Q ss_pred             CC--CeEEEEEeCCCceeeeccccc-------------------------------ccCCCcEEEEeCCCC---------
Q psy4578         678 YS--EYILATGSADKTQFEVEEEEE-------------------------------ENYDQKLMIWDTRSH---------  715 (860)
Q Consensus       678 ~g--~~llasgs~Dg~i~~~~~~~~-------------------------------~~~dg~I~iwDl~~~---------  715 (860)
                      .+  ...|++++.|.+++.|..+..                               +++|..+.+|+..+.         
T Consensus       155 ~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s  234 (423)
T KOG0313|consen  155 KNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSS  234 (423)
T ss_pred             cCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccc
Confidence            32  236999999999999876643                               357889999993221         


Q ss_pred             -------------CCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC
Q psy4578         716 -------------NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  782 (860)
Q Consensus       716 -------------~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp  782 (860)
                                   ....++.++.||+.+|.++.|++.+  .+.+++.|.+|+.||+.++.. ...+. .....+++..+|
T Consensus       235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~-~~~~~-~~ksl~~i~~~~  310 (423)
T KOG0313|consen  235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGL-KSTLT-TNKSLNCISYSP  310 (423)
T ss_pred             hhhhhhhhhhhcccccCceEEecccccceeeEEEcCCC--ceEeecccceEEEEEeecccc-eeeee-cCcceeEeeccc
Confidence                         1224677889999999999999944  488999999999999999987 44444 356789999999


Q ss_pred             CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         783 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       783 ~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ... +|++|+.|..|++||.+++.-           ......+.+|.+.|.++.|+|...+++++|+.|+++++
T Consensus       311 ~~~-Ll~~gssdr~irl~DPR~~~g-----------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl  372 (423)
T KOG0313|consen  311 LSK-LLASGSSDRHIRLWDPRTGDG-----------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL  372 (423)
T ss_pred             ccc-eeeecCCCCceeecCCCCCCC-----------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE
Confidence            887 699999999999999998532           34567888999999999999999999999999999985

>KOG0316|consensus

Probab=99.82  E-value=3.1e-19  Score=175.12  Aligned_cols=240  Identities=21%  Similarity=0.273  Sum_probs=193.5

Q ss_pred             cceeeeeeecceeecccceeEEEEeeccchhhhhhhhhc-ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe
Q psy4578         582 LKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDK-LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS  660 (860)
Q Consensus       582 ~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~-~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~  660 (860)
                      -....++...|.+.-+.+....+.+||..++.+...+.. ...|.+++.+. ++..|++|+.|..|.+||++++   +..
T Consensus        19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TG---kv~   94 (307)
T KOG0316|consen   19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNTG---KVD   94 (307)
T ss_pred             ceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEcccC---eee
Confidence            456677888888877777788899999988888877754 56799999986 7888999999999999999995   667


Q ss_pred             eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc---------------------------ccCCCcEEEEeCC
Q psy4578         661 HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE---------------------------ENYDQKLMIWDTR  713 (860)
Q Consensus       661 ~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~---------------------------~~~dg~I~iwDl~  713 (860)
                      +.+.+|.+.|+.+.|+.+.. ++++|+.|.+++.|+.+..                           ++.||.++.||++
T Consensus        95 Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR  173 (307)
T KOG0316|consen   95 RRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIR  173 (307)
T ss_pred             eecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEee
Confidence            88999999999999998776 7999999999999987654                           4679999999999


Q ss_pred             CCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceE--EEEEcCCCCCEEEEE
Q psy4578         714 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIF--QVQWSPHNETILASS  791 (860)
Q Consensus       714 ~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~--~l~fsp~g~~lL~tg  791 (860)
                      .+.   .....  ...+|+|++|+++++. ...++.|+++++.|-.+++. +..+.+|.+.-.  .++++.... .+++|
T Consensus       174 ~G~---l~sDy--~g~pit~vs~s~d~nc-~La~~l~stlrLlDk~tGkl-L~sYkGhkn~eykldc~l~qsdt-hV~sg  245 (307)
T KOG0316|consen  174 KGT---LSSDY--FGHPITSVSFSKDGNC-SLASSLDSTLRLLDKETGKL-LKSYKGHKNMEYKLDCCLNQSDT-HVFSG  245 (307)
T ss_pred             cce---eehhh--cCCcceeEEecCCCCE-EEEeeccceeeecccchhHH-HHHhcccccceeeeeeeecccce-eEEec
Confidence            873   22222  3467999999999996 66889999999999999998 888999987543  345665555 48999


Q ss_pred             ECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCc-eEEEEEccCCCeEEEEE
Q psy4578         792 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK-ISDFSWNPNEPWVICSV  848 (860)
Q Consensus       792 s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~-I~~i~~spdg~~Llasg  848 (860)
                      +.||.+++||+-....              +..+..+... |.+++++|.-..+++++
T Consensus       246 SEDG~Vy~wdLvd~~~--------------~sk~~~~~~v~v~dl~~hp~~~~f~~A~  289 (307)
T KOG0316|consen  246 SEDGKVYFWDLVDETQ--------------ISKLSVVSTVIVTDLSCHPTMDDFITAT  289 (307)
T ss_pred             cCCceEEEEEecccee--------------eeeeccCCceeEEeeecccCccceeEec
Confidence            9999999999987433              3333344555 78999999877655443

>KOG1407|consensus

Probab=99.82  E-value=3.5e-19  Score=177.37  Aligned_cols=206  Identities=22%  Similarity=0.417  Sum_probs=169.2

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      ..+.+|.+.|.+++|+. ++..+++|+.|+++.+|++..... ..-....+|.+.|-.++|+|....++++++.|.+   
T Consensus        14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~-~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~---   88 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRF-RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT---   88 (313)
T ss_pred             HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhh-hhhhcccCCCcchhhheeCCCCCcceEEecCCce---
Confidence            45667778999999997 899999999999999999987532 2233457899999999999988889999999998   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-----------
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-----------  763 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-----------  763 (860)
                                  |++||++.+   ++...+....+ -.-+.|+|+|.+ ++.|+.|..|...|.++.+.           
T Consensus        89 ------------ir~wd~r~~---k~~~~i~~~~e-ni~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~~e~n  151 (313)
T KOG1407|consen   89 ------------IRIWDIRSG---KCTARIETKGE-NINITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFKFEVN  151 (313)
T ss_pred             ------------EEEEEeccC---cEEEEeeccCc-ceEEEEcCCCCE-EEEecCcccEEEEEecccceeehhcccceee
Confidence                        999999987   44444443333 345789999997 88888888888888765322           


Q ss_pred             -----------------------------eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc
Q psy4578         764 -----------------------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA  814 (860)
Q Consensus       764 -----------------------------~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~  814 (860)
                                                   ++..+++|.....|+.|+|+|++ +++|+.|-.+-+||+...         
T Consensus       152 e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gry-fA~GsADAlvSLWD~~EL---------  221 (313)
T KOG1407|consen  152 EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRY-FATGSADALVSLWDVDEL---------  221 (313)
T ss_pred             eeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCce-EeeccccceeeccChhHh---------
Confidence                                         15556779999999999999997 999999999999999873         


Q ss_pred             cCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeecc
Q psy4578         815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPF  858 (860)
Q Consensus       815 ~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~f  858 (860)
                           .+.+.+..+.=+|..+.||.||+ ++|++|+|..|-|-+
T Consensus       222 -----iC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~  259 (313)
T KOG1407|consen  222 -----ICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAE  259 (313)
T ss_pred             -----hhheeeccccCceEEEEeccCcc-eeeccCccceEEeEe
Confidence                 45566667888999999999999 588999999998865

>KOG0269|consensus

Probab=99.82  E-value=5.1e-20  Score=206.35  Aligned_cols=202  Identities=23%  Similarity=0.441  Sum_probs=172.0

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      -.+.+|.|+....+++||++..|.|.+||+......+.+..+..|...++++.|++...+++++|+.||+          
T Consensus        88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~----------  157 (839)
T KOG0269|consen   88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGT----------  157 (839)
T ss_pred             eehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCce----------
Confidence            4678899998789999999999999999998643345667888999999999999999999999999999          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEc
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS  781 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fs  781 (860)
                           |++||++..   ....++.+....|+.+.|+|...+.|+++...|.+.+||+|....+...+.+|.++|.|+.|+
T Consensus       158 -----vK~~DlR~~---~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwh  229 (839)
T KOG0269|consen  158 -----VKCWDLRSK---KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWH  229 (839)
T ss_pred             -----EEEEeeecc---cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeec
Confidence                 999999987   555667778889999999998777899999999999999999988889999999999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC--CCeEe
Q psy4578         782 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE--DNIMQ  855 (860)
Q Consensus       782 p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~--Dg~Ir  855 (860)
                      |++.+ |||||.|+.|+|||+......            ...+. ....+|..+.|-|..++.|++++.  |..|+
T Consensus       230 Pnr~~-lATGGRDK~vkiWd~t~~~~~------------~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~  291 (839)
T KOG0269|consen  230 PNREW-LATGGRDKMVKIWDMTDSRAK------------PKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVH  291 (839)
T ss_pred             CCCce-eeecCCCccEEEEeccCCCcc------------ceeEE-eecceeeeeeeccCccchhhhhhccccceEE
Confidence            98875 999999999999999863321            11111 124689999999999999998874  44444

>KOG0971|consensus

Probab=99.82  E-value=6.8e-21  Score=214.61  Aligned_cols=122  Identities=31%  Similarity=0.472  Sum_probs=112.1

Q ss_pred             cCCCCCHHHHHH---------HHHHHhhhhcCCcccCccHHHHHHHHHHHHHHHHHHHHHHhcc----------CCCccc
Q psy4578          29 SDGKVDESKISE---------IASKVCESTFPSEALSQGAVACIKNAVNDLASNIANVAQNIQD----------IDPPLL   89 (860)
Q Consensus        29 ~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~p~~   89 (860)
                      |++||.+.++++         ++.+++|.+|+.+  +.+|++|+|++|.++.++|+.++++|++          .+||++
T Consensus       860 sa~gi~s~~~~~~~~~~al~kl~t~~~eriye~d--~~~p~~~lr~sleq~nstl~ll~~~~~~~Ey~~~~~ps~~~pl~  937 (1243)
T KOG0971|consen  860 SAQGIASLAENEGLLVAALEKLATKASERIYETD--SSSPYECLRQSLEQLNSTLNLLATAMQEGEYDAERPPSKPPPLE  937 (1243)
T ss_pred             HhccchhhhcccccHHHHhhhhcccchhhhccCC--ccchHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCcHH
Confidence            467777766665         6778888899998  8899999999999999999999999999          268899


Q ss_pred             cCccchhhh-------------hhhhHHHHHHHHhhcccccccchhhhhhhHHHhhhhhhhhhHHHHHhhhcccCC
Q psy4578          90 AKPEEPKVK-------------RERDIKDLKILLRSKQEEIGEISVRKDLAESKLANAIRDKDYQEQKLKDFYIAP  152 (860)
Q Consensus        90 ~ra~~~~~~-------------~~~~i~~lk~~~k~k~~~~~~~~~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  152 (860)
                      .||+++|++             ||++||||||++|+|+||+|||+||++||||||+.+.|+.+.|+.+++.+|.-.
T Consensus       938 ~RA~~~K~~~edaegL~~tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~ 1013 (1243)
T KOG0971|consen  938 LRAAALKAEIEDAEGLGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEET 1013 (1243)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHH
Confidence            999999999             999999999999999999999999999999999999999999999999999543

>KOG1007|consensus

Probab=99.82  E-value=1.3e-18  Score=175.28  Aligned_cols=248  Identities=23%  Similarity=0.415  Sum_probs=189.3

Q ss_pred             eeccchhhhhhhh-hcccceeeeEeeccCCcEEEEEeCC-------CcEEEEEcCCCCc------ccCeeecc-CCCCCe
Q psy4578         606 LENKTRAQICQLL-DKLRLLIDVAWHLLHESLFGSVADD-------QKLMIWDTRSHNV------SKPSHTVD-AHTAEV  670 (860)
Q Consensus       606 l~n~~~~~l~~l~-~~~~~V~~v~~sp~~~~~lasgs~D-------G~I~IWd~~~~~~------~~~~~~~~-~h~~~V  670 (860)
                      +......-....+ .+.+.|..++-+|.+..+|+++..+       ..+.||.+.....      ...+..+. .+-+.|
T Consensus        47 ~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i  126 (370)
T KOG1007|consen   47 LDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKI  126 (370)
T ss_pred             ecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCce
Confidence            3333333344444 4458899999999999999998763       2478999864321      12222332 345689


Q ss_pred             eEEEEccCCCeEEEEEeCCCceeeeccccc----------------------------------ccCCCcEEEEeCCCCC
Q psy4578         671 NCLSFNPYSEYILATGSADKTQFEVEEEEE----------------------------------ENYDQKLMIWDTRSHN  716 (860)
Q Consensus       671 ~~l~~sp~g~~llasgs~Dg~i~~~~~~~~----------------------------------~~~dg~I~iwDl~~~~  716 (860)
                      .|+.|.|++.. +++-. |..|.+|.+..+                                  ...++.+..||+++..
T Consensus       127 ~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~  204 (370)
T KOG1007|consen  127 NCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMK  204 (370)
T ss_pred             eeEEEcCCCCe-eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchh
Confidence            99999999886 44443 667888877654                                  1246789999999863


Q ss_pred             CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCc
Q psy4578         717 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR  796 (860)
Q Consensus       717 ~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~  796 (860)
                        +....-.+|...|..+.|+|+..++|+||+.||.|+|||.|..+.++..+.+|..+|+++.|+|....++++||.|..
T Consensus       205 --~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~  282 (370)
T KOG1007|consen  205 --KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA  282 (370)
T ss_pred             --hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence              233344678889999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             EEEEECCCCCcccccccccC---------------CCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeec
Q psy4578         797 LHVWDLSKIGEEQSTEDAED---------------GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKP  857 (860)
Q Consensus       797 I~iWdl~~~~~~~~~~~~~~---------------~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~  857 (860)
                      |.+|....-...+.+....+               -....+.++..|...|++++||.-.++++|+-|.||.+.|.
T Consensus       283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs  358 (370)
T KOG1007|consen  283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIIS  358 (370)
T ss_pred             eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEee
Confidence            99998876553333321110               12234567789999999999999999999999999999873

>KOG1332|consensus

Probab=99.82  E-value=5.6e-19  Score=174.38  Aligned_cols=241  Identities=23%  Similarity=0.346  Sum_probs=176.7

Q ss_pred             eeeeeeecceeecccceeEEEEeeccch-hhhhhhhhcccceeeeEe-eccCCcEEEEEeCCCcEEEEEcCCCCcccCee
Q psy4578         584 LFLNFFKQGYFKGTHHIEEVMYLENKTR-AQICQLLDKLRLLIDVAW-HLLHESLFGSVADDQKLMIWDTRSHNVSKPSH  661 (860)
Q Consensus       584 l~~~ll~~G~~~Gs~~l~~il~l~n~~~-~~l~~l~~~~~~V~~v~~-sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~  661 (860)
                      .++..++...-++...   +.-..+... ..+..+.+|.++|..++| +|..+.+||+++.||+|.||.-.++ ......
T Consensus        21 yygkrlATcsSD~tVk---If~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-~w~k~~   96 (299)
T KOG1332|consen   21 YYGKRLATCSSDGTVK---IFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-RWTKAY   96 (299)
T ss_pred             hhcceeeeecCCccEE---EEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-chhhhh
Confidence            3344444443333322   233333333 456677889999999999 5678999999999999999999886 345556


Q ss_pred             eccCCCCCeeEEEEccCC-CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC-
Q psy4578         662 TVDAHTAEVNCLSFNPYS-EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY-  739 (860)
Q Consensus       662 ~~~~h~~~V~~l~~sp~g-~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~-  739 (860)
                      ....|...|++++|.|.+ ..+|++++.||.               |.|.+.+.............|.-.|++++|.|. 
T Consensus        97 e~~~h~~SVNsV~wapheygl~LacasSDG~---------------vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~  161 (299)
T KOG1332|consen   97 EHAAHSASVNSVAWAPHEYGLLLACASSDGK---------------VSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS  161 (299)
T ss_pred             hhhhhcccceeecccccccceEEEEeeCCCc---------------EEEEEEcCCCCccchhhhhccccccceeeecCcC
Confidence            667899999999999864 346899999998               888887765333444566789999999999996 


Q ss_pred             --C----------CcEEEEeeCCCcEEEEeCCCCceee-EEeccCCCceEEEEEcCCC---CCEEEEEECCCcEEEEECC
Q psy4578         740 --S----------EYILATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWSPHN---ETILASSGTDRRLHVWDLS  803 (860)
Q Consensus       740 --g----------~~llasgs~Dg~I~IWDl~~~~~~~-~~~~~h~~~V~~l~fsp~g---~~lL~tgs~Dg~I~iWdl~  803 (860)
                        |          .+-|++|+.|+.|+||+..+....+ ..+.+|...|+.++|.|.-   +..+++|+.||++.||..+
T Consensus       162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence              3          1238999999999999998865433 3488999999999999963   4459999999999999877


Q ss_pred             CCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         804 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      ......+           ...+......+..+.||..|+. |+.++.|+.+.
T Consensus       242 ~e~e~wk-----------~tll~~f~~~~w~vSWS~sGn~-LaVs~GdNkvt  281 (299)
T KOG1332|consen  242 EEYEPWK-----------KTLLEEFPDVVWRVSWSLSGNI-LAVSGGDNKVT  281 (299)
T ss_pred             CccCccc-----------ccccccCCcceEEEEEeccccE-EEEecCCcEEE
Confidence            4211111           1122235678999999999995 55555555554

>PTZ00421 coronin; Provisional

Probab=99.81  E-value=1.8e-18  Score=199.08  Aligned_cols=201  Identities=20%  Similarity=0.324  Sum_probs=149.8

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCC----------CCcccCeeeccCCCCCeeEEEEcc-CCCeEEEEEeCCCc
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRS----------HNVSKPSHTVDAHTAEVNCLSFNP-YSEYILATGSADKT  691 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~----------~~~~~~~~~~~~h~~~V~~l~~sp-~g~~llasgs~Dg~  691 (860)
                      .|.....++ ++..+++++.+.....|+...          +........+.+|.+.|++++|+| ++. ++++|+.||+
T Consensus        22 ~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~-~LaSgS~Dgt   99 (493)
T PTZ00421         22 NVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ-KLFTASEDGT   99 (493)
T ss_pred             ccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC-EEEEEeCCCE
Confidence            343333333 333345555555555555432          221122234678999999999999 555 6999999999


Q ss_pred             eeeecccccccCCCcEEEEeCCCCCC----CCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE
Q psy4578         692 QFEVEEEEEENYDQKLMIWDTRSHNV----SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS  767 (860)
Q Consensus       692 i~~~~~~~~~~~dg~I~iwDl~~~~~----~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~  767 (860)
                                     |++||+.++..    ...+..+.+|...|.+++|+|++..+|++|+.|++|+|||++++.. ...
T Consensus       100 ---------------IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~~  163 (493)
T PTZ00421        100 ---------------IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-VEV  163 (493)
T ss_pred             ---------------EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EEE
Confidence                           99999976421    2356778999999999999998766799999999999999998876 778


Q ss_pred             eccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCc-eEEEEEccCCCeEEE
Q psy4578         768 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK-ISDFSWNPNEPWVIC  846 (860)
Q Consensus       768 ~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~-I~~i~~spdg~~Lla  846 (860)
                      +.+|...|.+++|+|+|. +|++|+.||.|++||++++.              .+....+|.+. +..+.|++++..+++
T Consensus       164 l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~--------------~v~tl~~H~~~~~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        164 IKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGT--------------IVSSVEAHASAKSQRCLWAKRKDLIIT  228 (493)
T ss_pred             EcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCc--------------EEEEEecCCCCcceEEEEcCCCCeEEE
Confidence            889999999999999998 58999999999999998733              34455567654 456789999886665


Q ss_pred             EE---eCCCeEee
Q psy4578         847 SV---SEDNIMQK  856 (860)
Q Consensus       847 sg---s~Dg~IrI  856 (860)
                      +|   +.|+.|++
T Consensus       229 ~G~s~s~Dr~Vkl  241 (493)
T PTZ00421        229 LGCSKSQQRQIML  241 (493)
T ss_pred             EecCCCCCCeEEE
Confidence            55   34677775

>KOG0278|consensus

Probab=99.81  E-value=2.8e-19  Score=176.75  Aligned_cols=211  Identities=17%  Similarity=0.320  Sum_probs=177.1

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEE
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  683 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ll  683 (860)
                      -.+|+.-.+..+..+.|..-|.+++|+. +.+.|++|+.+..+||||++..  ..+...+.+|.+.|..+.|+...+. +
T Consensus        83 akvw~a~tgdelhsf~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p--~App~E~~ghtg~Ir~v~wc~eD~~-i  158 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFEHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRP--KAPPKEISGHTGGIRTVLWCHEDKC-I  158 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhheeeeEEecc-cchhhhccchHHHhhhhhccCC--CCCchhhcCCCCcceeEEEeccCce-E
Confidence            3457777888888999999999999996 8889999999999999999875  4566778899999999999988776 5


Q ss_pred             EEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce
Q psy4578         684 ATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL  763 (860)
Q Consensus       684 asgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~  763 (860)
                      ++.+.|++               |++||.+++   ..+.++. ....|+++..+++|.  ++|-...++|..||..+...
T Consensus       159 LSSadd~t---------------VRLWD~rTg---t~v~sL~-~~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~~  217 (334)
T KOG0278|consen  159 LSSADDKT---------------VRLWDHRTG---TEVQSLE-FNSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFGL  217 (334)
T ss_pred             EeeccCCc---------------eEEEEeccC---cEEEEEe-cCCCCcceeeccCCC--EEEEecCceeEEeccccccc
Confidence            66688998               999999998   4445544 457899999999998  45666778999999999876


Q ss_pred             eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578         764 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW  843 (860)
Q Consensus       764 ~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~  843 (860)
                       +..+. -...|.+...+|+.. ++++|+.|+.++.||..++.....             ...+|.++|.++.|+|+|. 
T Consensus       218 -lKs~k-~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~TgeEi~~-------------~nkgh~gpVhcVrFSPdGE-  280 (334)
T KOG0278|consen  218 -LKSYK-MPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGEEIGS-------------YNKGHFGPVHCVRFSPDGE-  280 (334)
T ss_pred             -eeecc-CccccccccccCCCc-eEEecCcceEEEEEeccCCceeee-------------cccCCCCceEEEEECCCCc-
Confidence             55555 456789999999986 589999999999999999654321             1378999999999999999 


Q ss_pred             EEEEEeCCCeEee
Q psy4578         844 VICSVSEDNIMQK  856 (860)
Q Consensus       844 Llasgs~Dg~IrI  856 (860)
                      +.++||.||+||+
T Consensus       281 ~yAsGSEDGTirl  293 (334)
T KOG0278|consen  281 LYASGSEDGTIRL  293 (334)
T ss_pred             eeeccCCCceEEE
Confidence            7999999999996

>KOG0640|consensus

Probab=99.81  E-value=2.4e-19  Score=181.89  Aligned_cols=208  Identities=22%  Similarity=0.347  Sum_probs=168.4

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC------------C---CcccCeeeccCCCCCeeEEEEccCC
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS------------H---NVSKPSHTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~------------~---~~~~~~~~~~~h~~~V~~l~~sp~g  679 (860)
                      ..+..|.+++.+-+|+| +|.++++|+.|..|+|+|++.            +   ..-..++++..|...|+++.|+|..
T Consensus       106 ~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             EEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            34567888999999998 899999999999999999861            1   1113567888899999999999987


Q ss_pred             CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578         680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR  759 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~  759 (860)
                      . +|++|+.|++               |++||+......+....++ ...+|.++.|+|.|.+ ++.|....++++||++
T Consensus       185 ~-ILiS~srD~t---------------vKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~  246 (430)
T KOG0640|consen  185 T-ILISGSRDNT---------------VKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVN  246 (430)
T ss_pred             h-eEEeccCCCe---------------EEEEecccHHHHHHHHHhh-ccceeeeEeecCCCce-EEEecCCCceeEEecc
Confidence            7 7999999999               9999998654323333333 4678999999999996 7889999999999999


Q ss_pred             CCceeeEE--eccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCcc-CceEEEE
Q psy4578         760 NLKLKLHS--FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFS  836 (860)
Q Consensus       760 ~~~~~~~~--~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~-~~I~~i~  836 (860)
                      +.++.+..  -..|.+.|+++.+++.|+ +.+||+.||.|++||--++++...+..             .|. ..|.+..
T Consensus       247 T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~-------------AH~gsevcSa~  312 (430)
T KOG0640|consen  247 TYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGN-------------AHGGSEVCSAV  312 (430)
T ss_pred             ceeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHh-------------hcCCceeeeEE
Confidence            98873322  235899999999999998 689999999999999888776655443             343 4689999


Q ss_pred             EccCCCeEEEEEeCCCeEee
Q psy4578         837 WNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       837 ~spdg~~Llasgs~Dg~IrI  856 (860)
                      |..+|+|++ +.|.|.++++
T Consensus       313 Ftkn~kyiL-sSG~DS~vkL  331 (430)
T KOG0640|consen  313 FTKNGKYIL-SSGKDSTVKL  331 (430)
T ss_pred             EccCCeEEe-ecCCcceeee
Confidence            999999855 7788888764

>PTZ00420 coronin; Provisional

Probab=99.81  E-value=2.5e-18  Score=198.91  Aligned_cols=182  Identities=19%  Similarity=0.352  Sum_probs=142.9

Q ss_pred             EeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCC--
Q psy4578         640 VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV--  717 (860)
Q Consensus       640 gs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~--  717 (860)
                      |+.+|.|++|+...   ...+..+.+|.+.|.+++|+|+...++++|+.||+               |++||+.++..  
T Consensus        50 GG~~gvI~L~~~~r---~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dgt---------------IrIWDi~t~~~~~  111 (568)
T PTZ00420         50 GGLIGAIRLENQMR---KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLT---------------IRVWEIPHNDESV  111 (568)
T ss_pred             CCceeEEEeeecCC---CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCe---------------EEEEECCCCCccc
Confidence            66788999999865   34577888999999999999985457999999999               99999976421  


Q ss_pred             ---CCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC
Q psy4578         718 ---SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD  794 (860)
Q Consensus       718 ---~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D  794 (860)
                         ...+..+.+|...|.+++|+|++.+++++|+.||+|+|||++++.. ...+. |...|.+++|+|+|. +|++++.|
T Consensus       112 ~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D  188 (568)
T PTZ00420        112 KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVG  188 (568)
T ss_pred             cccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecC
Confidence               1234567899999999999999988788999999999999998875 45554 567899999999998 48889999


Q ss_pred             CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE-----EEEccCCCeEEEEEeCC---CeEee
Q psy4578         795 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD-----FSWNPNEPWVICSVSED---NIMQK  856 (860)
Q Consensus       795 g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~-----i~~spdg~~Llasgs~D---g~IrI  856 (860)
                      +.|++||++++.              .+..+.+|.+.+..     ..|++++.+++++|.++   +.|+|
T Consensus       189 ~~IrIwD~Rsg~--------------~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL  244 (568)
T PTZ00420        189 KHMHIIDPRKQE--------------IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKL  244 (568)
T ss_pred             CEEEEEECCCCc--------------EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence            999999999843              34556677765543     33568888766555444   24554

>KOG0289|consensus

Probab=99.81  E-value=1.9e-18  Score=182.54  Aligned_cols=223  Identities=22%  Similarity=0.334  Sum_probs=172.0

Q ss_pred             eccchhhhhh-hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEE
Q psy4578         607 ENKTRAQICQ-LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT  685 (860)
Q Consensus       607 ~n~~~~~l~~-l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llas  685 (860)
                      .+....+++. +.+|...|+++.++| +...+++++.|-.|+||.....   ........|..+|+.+..+|.|.| |++
T Consensus       246 ~d~~s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~---s~~~~~~~h~~~V~~ls~h~tgeY-lls  320 (506)
T KOG0289|consen  246 FDKPSNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLS---SEPTSSRPHEEPVTGLSLHPTGEY-LLS  320 (506)
T ss_pred             EecchhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccc---cCccccccccccceeeeeccCCcE-EEE
Confidence            3444555554 456678899999998 7888999999999999998764   344556789999999999999998 788


Q ss_pred             EeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC--CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce
Q psy4578         686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA--HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL  763 (860)
Q Consensus       686 gs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~--h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~  763 (860)
                      ++.||+               ..+.|++++   ..+.....  ..-.+++.+|||||. +|.+|..||.++|||+.+...
T Consensus       321 As~d~~---------------w~Fsd~~~g---~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~  381 (506)
T KOG0289|consen  321 ASNDGT---------------WAFSDISSG---SQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTN  381 (506)
T ss_pred             ecCCce---------------EEEEEccCC---cEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCccc
Confidence            899998               888899887   33333322  234589999999998 799999999999999999886


Q ss_pred             eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC---------------------------
Q psy4578         764 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED---------------------------  816 (860)
Q Consensus       764 ~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~---------------------------  816 (860)
                       +..|.+|.++|..++|+.+|-+ |+++++|+.|++||++.......+...+.                           
T Consensus       382 -~a~Fpght~~vk~i~FsENGY~-Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~  459 (506)
T KOG0289|consen  382 -VAKFPGHTGPVKAISFSENGYW-LATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC  459 (506)
T ss_pred             -cccCCCCCCceeEEEeccCceE-EEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence             8899999999999999999965 99999999999999998765544332210                           


Q ss_pred             ----CCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         817 ----GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       817 ----~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                          ..+..+.....|.+..+++.|....+ +++++|.|.++++
T Consensus       460 ~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq-~l~s~smd~~l~~  502 (506)
T KOG0289|consen  460 KKKTKSWTEIKELADHSGLSTGVRFGEHAQ-YLASTSMDAILRL  502 (506)
T ss_pred             ecccccceeeehhhhcccccceeeecccce-EEeeccchhheEE
Confidence                01222233345666677777777777 4667777777665

>KOG0270|consensus

Probab=99.80  E-value=1.2e-18  Score=185.00  Aligned_cols=241  Identities=19%  Similarity=0.334  Sum_probs=189.1

Q ss_pred             ceeeeeeecceeecccceeEEEEeeccch--------hhhh--------hhhhcccceeeeEeeccCCcEEEEEeCCCcE
Q psy4578         583 KLFLNFFKQGYFKGTHHIEEVMYLENKTR--------AQIC--------QLLDKLRLLIDVAWHLLHESLFGSVADDQKL  646 (860)
Q Consensus       583 ~l~~~ll~~G~~~Gs~~l~~il~l~n~~~--------~~l~--------~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I  646 (860)
                      .-.++++|.|++.....++..-+.+....        .+..        ...+|.+.|.+++|+....++||+||.|.+|
T Consensus       189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV  268 (463)
T KOG0270|consen  189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV  268 (463)
T ss_pred             CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence            34567888888877655554433332210        0111        0124667789999999889999999999999


Q ss_pred             EEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC
Q psy4578         647 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA  726 (860)
Q Consensus       647 ~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~  726 (860)
                      ++||+.++   ++..++..|...|.++.|+|....++++|+.|++               |.+.|.+..........   
T Consensus       269 ~lWD~~~g---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~---------------V~l~D~R~~~~s~~~wk---  327 (463)
T KOG0270|consen  269 KLWDVDTG---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT---------------VALKDCRDPSNSGKEWK---  327 (463)
T ss_pred             EEEEcCCC---CcceehhhcCCceeEEEecCCCceEEEeccccce---------------EEeeeccCccccCceEE---
Confidence            99999995   5677778899999999999999889999999999               99999996432222223   


Q ss_pred             CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         727 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       727 h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      ..+.|-.++|+|...+.++++..||+++-+|+|....++.+..+|.+.|.++++++.-+.+++|++.|+.+++|++....
T Consensus       328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            35789999999999888999999999999999998777999999999999999999999999999999999999988633


Q ss_pred             cccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         807 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       807 ~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ..            .+....-.-+...++++.|+-.++++.|+..+.++|
T Consensus       408 ~~------------~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~v  445 (463)
T KOG0270|consen  408 PK------------SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRV  445 (463)
T ss_pred             Cc------------ccccccccccceeecccCCCcceEEEecCccceEEE
Confidence            21            111111122447788999999999999999987775

>KOG0308|consensus

Probab=99.80  E-value=6.9e-19  Score=193.91  Aligned_cols=207  Identities=19%  Similarity=0.361  Sum_probs=173.0

Q ss_pred             hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         614 ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      +..+..|.+-|+++..+. +++.|+++|.|.+|++|+...+. ..+..++..|...|.|+++-...+.++++||-|+.  
T Consensus        66 ~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~--  141 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRK--  141 (735)
T ss_pred             hhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCcc--
Confidence            444555667799999985 77789999999999999998754 35677888999999999994445558999999998  


Q ss_pred             eecccccccCCCcEEEEeCCCCCC-------CCCeeeec-CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceee
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNV-------SKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL  765 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~-------~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~  765 (860)
                                   |.+||++++..       ......+. |+...|++++.++.|. ++++|+..+.+++||.++... +
T Consensus       142 -------------IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~k-i  206 (735)
T KOG0308|consen  142 -------------IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCKK-I  206 (735)
T ss_pred             -------------EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcccceEEeccccccc-e
Confidence                         99999987621       11222333 8889999999999996 799999999999999999987 7


Q ss_pred             EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEE
Q psy4578         766 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI  845 (860)
Q Consensus       766 ~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Ll  845 (860)
                      ..+.+|...|.++..++||+. +++++.||+|++||+..              .+++.++..|...|+++.-+|+-.+ +
T Consensus       207 mkLrGHTdNVr~ll~~dDGt~-~ls~sSDgtIrlWdLgq--------------QrCl~T~~vH~e~VWaL~~~~sf~~-v  270 (735)
T KOG0308|consen  207 MKLRGHTDNVRVLLVNDDGTR-LLSASSDGTIRLWDLGQ--------------QRCLATYIVHKEGVWALQSSPSFTH-V  270 (735)
T ss_pred             eeeeccccceEEEEEcCCCCe-EeecCCCceEEeeeccc--------------cceeeeEEeccCceEEEeeCCCcce-E
Confidence            788899999999999999997 78999999999999987              4567777889999999999999886 5


Q ss_pred             EEEeCCCeEe
Q psy4578         846 CSVSEDNIMQ  855 (860)
Q Consensus       846 asgs~Dg~Ir  855 (860)
                      .+|+.||.|.
T Consensus       271 YsG~rd~~i~  280 (735)
T KOG0308|consen  271 YSGGRDGNIY  280 (735)
T ss_pred             EecCCCCcEE
Confidence            6777777664

>KOG0275|consensus

Probab=99.80  E-value=1.6e-19  Score=183.68  Aligned_cols=230  Identities=20%  Similarity=0.306  Sum_probs=176.5

Q ss_pred             eeeeecceeecccceeEEEEeeccchhhhhhh---------hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc
Q psy4578         586 LNFFKQGYFKGTHHIEEVMYLENKTRAQICQL---------LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV  656 (860)
Q Consensus       586 ~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l---------~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~  656 (860)
                      .++...|.|..++.....+.+||...+++..-         .-+.+.|.|++|+. +...+|+|+.||.|++|.+.+|  
T Consensus       219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG--  295 (508)
T KOG0275|consen  219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIETG--  295 (508)
T ss_pred             eeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEecc--
Confidence            33444444444445555677788777765442         23447899999997 8899999999999999999996  


Q ss_pred             ccCeeecc-CCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEE
Q psy4578         657 SKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS  735 (860)
Q Consensus       657 ~~~~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~  735 (860)
                       .++..+. .|...|+|+.|+.|+.. +.+++.|.+               +++..+.++   +.+..+.+|++.|+...
T Consensus       296 -~ClRrFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~t---------------vRiHGlKSG---K~LKEfrGHsSyvn~a~  355 (508)
T KOG0275|consen  296 -QCLRRFDRAHTKGVTCLSFSRDNSQ-ILSASFDQT---------------VRIHGLKSG---KCLKEFRGHSSYVNEAT  355 (508)
T ss_pred             -hHHHHhhhhhccCeeEEEEccCcch-hhcccccce---------------EEEeccccc---hhHHHhcCccccccceE
Confidence             4455554 89999999999999986 788889988               999999988   77888999999999999


Q ss_pred             EcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc---------------------------------------------
Q psy4578         736 FNPYSEYILATGSADKTVALWDLRNLKLKLHSFES---------------------------------------------  770 (860)
Q Consensus       736 ~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~---------------------------------------------  770 (860)
                      |.++|.+ +++++.||+|++|+..+..+ +.++..                                             
T Consensus       356 ft~dG~~-iisaSsDgtvkvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSG  433 (508)
T KOG0275|consen  356 FTDDGHH-IISASSDGTVKVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSG  433 (508)
T ss_pred             EcCCCCe-EEEecCCccEEEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccC
Confidence            9999997 88999999999999877654 221111                                             


Q ss_pred             --CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578         771 --HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       771 --h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                        ..+...+++.+|.|.+ +.+.+.|+.++.|.+.++.              +-..+.-|...|.+++-+|..+ ++++-
T Consensus       434 kREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~--------------LE~tl~VhEkdvIGl~HHPHqN-llAsY  497 (508)
T KOG0275|consen  434 KREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGK--------------LERTLPVHEKDVIGLTHHPHQN-LLASY  497 (508)
T ss_pred             CccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCc--------------eeeeeecccccccccccCcccc-hhhhh
Confidence              1233445566777775 5667777777777776633              3345556888899999999877 79999


Q ss_pred             eCCCeEee
Q psy4578         849 SEDNIMQK  856 (860)
Q Consensus       849 s~Dg~IrI  856 (860)
                      ++||.+++
T Consensus       498 sEDgllKL  505 (508)
T KOG0275|consen  498 SEDGLLKL  505 (508)
T ss_pred             cccchhhh
Confidence            99998874

>KOG0283|consensus

Probab=99.80  E-value=1.4e-18  Score=197.96  Aligned_cols=207  Identities=19%  Similarity=0.329  Sum_probs=161.8

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC--------------------------------CC-----------
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS--------------------------------HN-----------  655 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~--------------------------------~~-----------  655 (860)
                      .|.+.|+++.|++ +|++||+||.||.|+||.+..                                ..           
T Consensus       265 ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            6778999999998 899999999999999998754                                00           


Q ss_pred             --------------cccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCe
Q psy4578         656 --------------VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPS  721 (860)
Q Consensus       656 --------------~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~  721 (860)
                                    ..++++.+.||.+.|.++.|+.++  +|++++.|.+               |++|++...   ..+
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKT---------------VRLWh~~~~---~CL  403 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKT---------------VRLWHPGRK---ECL  403 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCC--eeEecccccc---------------EEeecCCCc---cee
Confidence                          013455678999999999999744  5899999999               999999876   555


Q ss_pred             eeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         722 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       722 ~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      ..|. |...|+|++|+|.....|++|+-||.|+||++...+.  ..+..-..-|++++|.|+|++ .+.|+.+|.+++|+
T Consensus       404 ~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V--v~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~  479 (712)
T KOG0283|consen  404 KVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV--VDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYD  479 (712)
T ss_pred             eEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCee--EeehhhhhhheeEEeccCCce-EEEEEeccEEEEEE
Confidence            5554 9999999999996665699999999999999988774  445555689999999999996 88999999999999


Q ss_pred             CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +...+......-......     -..|. .|+++.|.|...--+...+.|..|||
T Consensus       480 t~~lk~~~~~~I~~~~~K-----k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI  528 (712)
T KOG0283|consen  480 TEGLKLVSDFHIRLHNKK-----KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRI  528 (712)
T ss_pred             ccCCeEEEeeeEeeccCc-----cccCc-eeeeeEecCCCCCeEEEecCCCceEE
Confidence            987655433221100000     01233 89999999865543556778888887

>KOG0288|consensus

Probab=99.80  E-value=1.2e-18  Score=183.34  Aligned_cols=233  Identities=22%  Similarity=0.361  Sum_probs=181.1

Q ss_pred             ceeEEEEeeccchhh---hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEE
Q psy4578         599 HIEEVMYLENKTRAQ---ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  675 (860)
Q Consensus       599 ~l~~il~l~n~~~~~---l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~  675 (860)
                      +...++.+|+....+   +..+.+..++|+++.|.+ ++..+++++.|+.+++|++.+   .+...++.+|.+.|+++.|
T Consensus       194 g~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~---~r~~~TLsGHtdkVt~ak~  269 (459)
T KOG0288|consen  194 GSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDS---LRLRHTLSGHTDKVTAAKF  269 (459)
T ss_pred             chhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeeccc---hhhhhhhcccccceeeehh
Confidence            444555566654444   344556678899999998 677788889999999999988   4667889999999999999


Q ss_pred             ccCCCeEEEEEeCCCceeeeccccc------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCe
Q psy4578         676 NPYSEYILATGSADKTQFEVEEEEE------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEV  731 (860)
Q Consensus       676 sp~g~~llasgs~Dg~i~~~~~~~~------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I  731 (860)
                      ...... +++|+.|.++..|++...                        +..|++|++||+++.   ........+ +.|
T Consensus       270 ~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~---~~~~sv~~g-g~v  344 (459)
T KOG0288|consen  270 KLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSA---DKTRSVPLG-GRV  344 (459)
T ss_pred             hccccc-eeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCC---ceeeEeecC-cce
Confidence            876654 899999999999987643                        346889999999987   555566555 499


Q ss_pred             EEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc----CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578         732 NCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES----HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       732 ~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~----h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~  807 (860)
                      +++..+++|.. +.+++.|.++.+.|+++... ...+.+    .....+.+.|||++.| +++||.||.|+||++.+++.
T Consensus       345 tSl~ls~~g~~-lLsssRDdtl~viDlRt~eI-~~~~sA~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKl  421 (459)
T KOG0288|consen  345 TSLDLSMDGLE-LLSSSRDDTLKVIDLRTKEI-RQTFSAEGFKCASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKL  421 (459)
T ss_pred             eeEeeccCCeE-EeeecCCCceeeeecccccE-EEEeeccccccccccceeEECCCCce-eeeccCCCcEEEEEccCceE
Confidence            99999999997 66779999999999999876 444443    1234788999999997 89999999999999999665


Q ss_pred             ccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         808 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       808 ~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .....            ..+....|++++|+|.|.+++ +++.++.+.+
T Consensus       422 E~~l~------------~s~s~~aI~s~~W~~sG~~Ll-sadk~~~v~l  457 (459)
T KOG0288|consen  422 EKVLS------------LSTSNAAITSLSWNPSGSGLL-SADKQKAVTL  457 (459)
T ss_pred             EEEec------------cCCCCcceEEEEEcCCCchhh-cccCCcceEe
Confidence            43221            112223699999999999855 7777766653

>KOG0267|consensus

Probab=99.79  E-value=1.7e-19  Score=200.74  Aligned_cols=210  Identities=28%  Similarity=0.524  Sum_probs=177.4

Q ss_pred             eeEEEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578         600 IEEVMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  678 (860)
Q Consensus       600 l~~il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~  678 (860)
                      -....-+|...... +..+.+|..+|-++.|++ ...++++|+.+|+|++||++.   .+.+.++.+|...+.++.|+|.
T Consensus        48 ~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDlee---Ak~vrtLtgh~~~~~sv~f~P~  123 (825)
T KOG0267|consen   48 EDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEE---AKIVRTLTGHLLNITSVDFHPY  123 (825)
T ss_pred             CceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhh---hhhhhhhhccccCcceeeeccc
Confidence            33444455544333 344678889999999997 788999999999999999997   4667899999999999999999


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL  758 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl  758 (860)
                      +.+ +++|+.|+.               +++||++..   .+.+.+.+|...+.++.|+|+|.+ +++|+.|.+++|||.
T Consensus       124 ~~~-~a~gStdtd---------------~~iwD~Rk~---Gc~~~~~s~~~vv~~l~lsP~Gr~-v~~g~ed~tvki~d~  183 (825)
T KOG0267|consen  124 GEF-FASGSTDTD---------------LKIWDIRKK---GCSHTYKSHTRVVDVLRLSPDGRW-VASGGEDNTVKIWDL  183 (825)
T ss_pred             eEE-ecccccccc---------------ceehhhhcc---CceeeecCCcceeEEEeecCCCce-eeccCCcceeeeecc
Confidence            987 699999988               999999965   567788899999999999999996 999999999999999


Q ss_pred             CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc
Q psy4578         759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN  838 (860)
Q Consensus       759 ~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s  838 (860)
                      ..++. ...|..|.+.+.++.|+|.. +++++||.|+++++||+++.              ..+...+.....|.+.+|+
T Consensus       184 ~agk~-~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletf--------------e~I~s~~~~~~~v~~~~fn  247 (825)
T KOG0267|consen  184 TAGKL-SKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETF--------------EVISSGKPETDGVRSLAFN  247 (825)
T ss_pred             ccccc-ccccccccccccccccCchh-hhhccCCCCceeeeecccee--------------EEeeccCCccCCceeeeec
Confidence            99987 88899999999999999977 47999999999999999973              3344444557889999999


Q ss_pred             cCCCeEEEEEeC
Q psy4578         839 PNEPWVICSVSE  850 (860)
Q Consensus       839 pdg~~Llasgs~  850 (860)
                      |+|.. +.+|..
T Consensus       248 ~~~~~-~~~G~q  258 (825)
T KOG0267|consen  248 PDGKI-VLSGEQ  258 (825)
T ss_pred             CCcee-eecCch
Confidence            99994 445543

>KOG0307|consensus

Probab=99.79  E-value=5.4e-19  Score=206.50  Aligned_cols=214  Identities=26%  Similarity=0.450  Sum_probs=176.0

Q ss_pred             hhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578         611 RAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK  690 (860)
Q Consensus       611 ~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg  690 (860)
                      ...+.+...|.+.|.++.|++..++++|+|+.||.|.|||+...+...... -....+.|.+++|+..-.++|++|+.+|
T Consensus       106 ~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg  184 (1049)
T KOG0307|consen  106 EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSG  184 (1049)
T ss_pred             hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCC
Confidence            344666667889999999999888899999999999999998743211111 1224678999999999889999999998


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCC--CeEEEEEcCCCCcEEEEeeCC---CcEEEEeCCCCceee
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA--EVNCLSFNPYSEYILATGSAD---KTVALWDLRNLKLKL  765 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~--~I~sl~~sp~g~~llasgs~D---g~I~IWDl~~~~~~~  765 (860)
                      .               +.|||++..   +++..+..|.+  .+..++|||++...+++++.|   -.|.+||+|....++
T Consensus       185 ~---------------~~iWDlr~~---~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~  246 (1049)
T KOG0307|consen  185 R---------------AVIWDLRKK---KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL  246 (1049)
T ss_pred             C---------------ceeccccCC---CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence            8               999999986   45555554444  477899999987777777765   359999999988889


Q ss_pred             EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEE
Q psy4578         766 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI  845 (860)
Q Consensus       766 ~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Ll  845 (860)
                      +.+.+|...|.++.|++.+..++++++.|++|.+|+.++++.              +..+......+..+.|+|....++
T Consensus       247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv--------------l~~~p~~~nW~fdv~w~pr~P~~~  312 (1049)
T KOG0307|consen  247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV--------------LGELPAQGNWCFDVQWCPRNPSVM  312 (1049)
T ss_pred             hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE--------------eeecCCCCcceeeeeecCCCcchh
Confidence            999999999999999999977899999999999999998544              444445567899999999999899


Q ss_pred             EEEeCCCeEeec
Q psy4578         846 CSVSEDNIMQKP  857 (860)
Q Consensus       846 asgs~Dg~IrI~  857 (860)
                      +..+.||.|.|.
T Consensus       313 A~asfdgkI~I~  324 (1049)
T KOG0307|consen  313 AAASFDGKISIY  324 (1049)
T ss_pred             hhheeccceeee
Confidence            999999999873

>KOG0973|consensus

Probab=99.78  E-value=4.6e-18  Score=198.14  Aligned_cols=227  Identities=26%  Similarity=0.419  Sum_probs=173.6

Q ss_pred             cceeeeEeeccCCcEEEEEe--CCCcEEEEEcCC---------CCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578         622 RLLIDVAWHLLHESLFGSVA--DDQKLMIWDTRS---------HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK  690 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs--~DG~I~IWd~~~---------~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg  690 (860)
                      ..|.++..+| ++..++||+  .||.++||+...         ....+.+.+...|.+.|+|+.|+|||.+ ||+|++|+
T Consensus        14 ~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~-lAsGSDD~   91 (942)
T KOG0973|consen   14 KSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSY-LASGSDDR   91 (942)
T ss_pred             eeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCe-EeeccCcc
Confidence            4589999999 899999999  999999998752         1124566778889999999999999997 99999999


Q ss_pred             ceeeecccccccCCCcEEEEe---CCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE
Q psy4578         691 TQFEVEEEEEENYDQKLMIWD---TRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS  767 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwD---l~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~  767 (860)
                      .+.+|+....+ . + =..|+   ...-+.++.+..+.+|...|..++|+|++. ++++++.|++|.||+.++... +..
T Consensus        92 ~v~iW~~~~~~-~-~-~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~-~~v  166 (942)
T KOG0973|consen   92 LVMIWERAEIG-S-G-TVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFEL-LKV  166 (942)
T ss_pred             eEEEeeecccC-C-c-ccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEcccccee-eee
Confidence            96666655310 0 0 00111   001122356778899999999999999999 599999999999999999965 899


Q ss_pred             eccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccccc--------------------------------
Q psy4578         768 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE--------------------------------  815 (860)
Q Consensus       768 ~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~--------------------------------  815 (860)
                      +.+|.+.|..+.|.|-|++ |++-++|++|+||++........+...-                                
T Consensus       167 l~~H~s~VKGvs~DP~Gky-~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~  245 (942)
T KOG0973|consen  167 LRGHQSLVKGVSWDPIGKY-FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS  245 (942)
T ss_pred             eecccccccceEECCccCe-eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence            9999999999999999997 8999999999999976633322221100                                


Q ss_pred             ------CCCCccEEEecCccCceEEEEEcc--------CC-------Ce-EEEEEeCCCeEee
Q psy4578         816 ------DGPPELLFIHGGHTAKISDFSWNP--------NE-------PW-VICSVSEDNIMQK  856 (860)
Q Consensus       816 ------~~~~~~i~~~~~h~~~I~~i~~sp--------dg-------~~-Llasgs~Dg~IrI  856 (860)
                            -+....-..+-||.+++..++|+|        +|       .| ++|+||.|++|-|
T Consensus       246 ~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV  308 (942)
T KOG0973|consen  246 TIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV  308 (942)
T ss_pred             eeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence                  012223344568999999999998        11       12 8999999999875

>KOG1332|consensus

Probab=99.78  E-value=1.4e-18  Score=171.68  Aligned_cols=208  Identities=22%  Similarity=0.330  Sum_probs=166.8

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEc-cCCCeEEEEEeCCCceeeeccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN-PYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~s-p~g~~llasgs~Dg~i~~~~~~  698 (860)
                      |.+.|-++...- .+..||||+.|++|+|+.++.......+..+.+|.++|..++|. |.-..+|++++.||.       
T Consensus        10 H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk-------   81 (299)
T KOG1332|consen   10 HEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK-------   81 (299)
T ss_pred             hhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce-------
Confidence            445555555553 68899999999999999999876557888999999999999996 443348999999998       


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCC-cEEEEeeCCCcEEEEeCCCCc-e-eeEEeccCCCce
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE-YILATGSADKTVALWDLRNLK-L-KLHSFESHKDEI  775 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~-~llasgs~Dg~I~IWDl~~~~-~-~~~~~~~h~~~V  775 (860)
                              |.||.-.++ ..........|.+.|++++|.|.+. .+|++|+.||.|.|.+.++.. . ......+|.-.|
T Consensus        82 --------VIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv  152 (299)
T KOG1332|consen   82 --------VIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV  152 (299)
T ss_pred             --------EEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence                    999988877 3466777888999999999999643 468999999999999987652 1 133456899999


Q ss_pred             EEEEEcCC---C----------CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCC-
Q psy4578         776 FQVQWSPH---N----------ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE-  841 (860)
Q Consensus       776 ~~l~fsp~---g----------~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg-  841 (860)
                      ++++|.|-   |          .+-|++||.|+.|+||+..+..            ...-..+.+|.+.|++++|.|.- 
T Consensus       153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~------------w~~e~~l~~H~dwVRDVAwaP~~g  220 (299)
T KOG1332|consen  153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS------------WKLERTLEGHKDWVRDVAWAPSVG  220 (299)
T ss_pred             ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc------------hhhhhhhhhcchhhhhhhhccccC
Confidence            99999986   4          1238999999999999998742            22334477999999999999953 


Q ss_pred             --CeEEEEEeCCCeEee
Q psy4578         842 --PWVICSVSEDNIMQK  856 (860)
Q Consensus       842 --~~Llasgs~Dg~IrI  856 (860)
                        +.-+|+||.||.+.|
T Consensus       221 l~~s~iAS~SqDg~viI  237 (299)
T KOG1332|consen  221 LPKSTIASCSQDGTVII  237 (299)
T ss_pred             CCceeeEEecCCCcEEE
Confidence              446899999999876

>KOG0274|consensus

Probab=99.78  E-value=5.7e-18  Score=195.30  Aligned_cols=219  Identities=26%  Similarity=0.473  Sum_probs=179.2

Q ss_pred             cceeecccceeEEEEeeccchhhhhh-hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCC
Q psy4578         591 QGYFKGTHHIEEVMYLENKTRAQICQ-LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAE  669 (860)
Q Consensus       591 ~G~~~Gs~~l~~il~l~n~~~~~l~~-l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~  669 (860)
                      .|++........+..+.......+.. +.+|.+.|.++++.. .+.++++|+.|.++++||..++   .+...+.+|.+.
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg---~C~~~l~gh~st  293 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTG---ECTHSLQGHTSS  293 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCC---cEEEEecCCCce
Confidence            44443333333333444444555555 788999999999986 8999999999999999999884   678889999999


Q ss_pred             eeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC
Q psy4578         670 VNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA  749 (860)
Q Consensus       670 V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~  749 (860)
                      |.++...+   ..+++|+.|.+               |++|++.++   ..+..+.+|.+.|+++..+  +. ++++|+.
T Consensus       294 v~~~~~~~---~~~~sgs~D~t---------------VkVW~v~n~---~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~  349 (537)
T KOG0274|consen  294 VRCLTIDP---FLLVSGSRDNT---------------VKVWDVTNG---ACLNLLRGHTGPVNCVQLD--EP-LLVSGSY  349 (537)
T ss_pred             EEEEEccC---ceEeeccCCce---------------EEEEeccCc---ceEEEeccccccEEEEEec--CC-EEEEEec
Confidence            99998865   56788899998               999999987   7777888899999999998  55 5999999


Q ss_pred             CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCcc
Q psy4578         750 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT  829 (860)
Q Consensus       750 Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~  829 (860)
                      ||+|++||+.++++ ++.+.+|.+.|.++.+.+. . .+++|+.|++|++||+.+..             .++..+.+|.
T Consensus       350 d~~v~VW~~~~~~c-l~sl~gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~-------------~c~~tl~~h~  413 (537)
T KOG0274|consen  350 DGTVKVWDPRTGKC-LKSLSGHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKR-------------KCIHTLQGHT  413 (537)
T ss_pred             CceEEEEEhhhcee-eeeecCCcceEEEEEecCc-c-eEEeeeeccceEeecCCchh-------------hhhhhhcCCc
Confidence            99999999999887 9999999999999988765 3 48899999999999999841             4567777888


Q ss_pred             CceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         830 AKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       830 ~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +-+.++.+  .++ ++++++.|++|++
T Consensus       414 ~~v~~l~~--~~~-~Lvs~~aD~~Ik~  437 (537)
T KOG0274|consen  414 SLVSSLLL--RDN-FLVSSSADGTIKL  437 (537)
T ss_pred             cccccccc--ccc-eeEeccccccEEE
Confidence            88866554  445 5779999998886

>KOG0772|consensus

Probab=99.78  E-value=3e-18  Score=184.20  Aligned_cols=215  Identities=18%  Similarity=0.317  Sum_probs=158.8

Q ss_pred             hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-ccCeeec-cCCCCCeeEEEEccCCCeEEEEEeCC
Q psy4578         612 AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-SKPSHTV-DAHTAEVNCLSFNPYSEYILATGSAD  689 (860)
Q Consensus       612 ~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-~~~~~~~-~~h~~~V~~l~~sp~g~~llasgs~D  689 (860)
                      ..-.++..|...|+++++.| .|..|++|+.|-.|++||+..-.. .+....+ ......|.++.|++.|..+|++.+ .
T Consensus       158 shEi~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg-~  235 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG-S  235 (641)
T ss_pred             cceEeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec-C
Confidence            33445556667899999998 788999999999999999974211 1111111 223467999999999997555443 3


Q ss_pred             CceeeecccccccCCCcEEEEeCCCCC---------CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578         690 KTQFEVEEEEEENYDQKLMIWDTRSHN---------VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN  760 (860)
Q Consensus       690 g~i~~~~~~~~~~~dg~I~iwDl~~~~---------~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~  760 (860)
                      ..               .+++|.....         ...-+...+||...++|.+|+|..+..++|++.||+++|||+..
T Consensus       236 aq---------------akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~  300 (641)
T KOG0772|consen  236 AQ---------------AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN  300 (641)
T ss_pred             cc---------------eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence            33               5556543321         12233456799999999999999988899999999999999987


Q ss_pred             CceeeEEec-----cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccC--ceE
Q psy4578         761 LKLKLHSFE-----SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA--KIS  833 (860)
Q Consensus       761 ~~~~~~~~~-----~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~--~I~  833 (860)
                      .......+.     +..-.++.++|+++|+. +++|+.||.|.+|+..+...           ......-..|..  .|+
T Consensus       301 ~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v-----------~p~~~vk~AH~~g~~It  368 (641)
T KOG0772|consen  301 TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTV-----------RPVMKVKDAHLPGQDIT  368 (641)
T ss_pred             chhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCccc-----------ccceEeeeccCCCCcee
Confidence            765344333     34457899999999996 89999999999999865322           223444556776  899


Q ss_pred             EEEEccCCCeEEEEEeCCCeEee
Q psy4578         834 DFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       834 ~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|.||+||++ |++-|.|+++++
T Consensus       369 si~FS~dg~~-LlSRg~D~tLKv  390 (641)
T KOG0772|consen  369 SISFSYDGNY-LLSRGFDDTLKV  390 (641)
T ss_pred             EEEeccccch-hhhccCCCceee
Confidence            9999999996 668899998886

>KOG0641|consensus

Probab=99.77  E-value=4.4e-17  Score=158.77  Aligned_cols=216  Identities=23%  Similarity=0.381  Sum_probs=166.7

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC------C----Ccc--cCeeeccCCCCCeeEEEEccCCCeEE
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS------H----NVS--KPSHTVDAHTAEVNCLSFNPYSEYIL  683 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~------~----~~~--~~~~~~~~h~~~V~~l~~sp~g~~ll  683 (860)
                      .++.....|.+++|+| .+.+.++|+...+.+|-....      +    ...  -....-+.|.+.|.|.+|+|.|. ++
T Consensus        27 ~~l~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-li  104 (350)
T KOG0641|consen   27 NILEDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LI  104 (350)
T ss_pred             EEecchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eE
Confidence            3445567899999999 788999999999998875432      1    010  01123467899999999999998 79


Q ss_pred             EEEeCCCceeeeccccc-------------------------------------ccCCCcEEEEeCCCCCCCCCeeeecC
Q psy4578         684 ATGSADKTQFEVEEEEE-------------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDA  726 (860)
Q Consensus       684 asgs~Dg~i~~~~~~~~-------------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~  726 (860)
                      ++|+.|.+|.+...+..                                     +..|.+|.+-|-..+   .....+.+
T Consensus       105 atgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g---~~~~a~sg  181 (350)
T KOG0641|consen  105 ATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG---QGFHALSG  181 (350)
T ss_pred             EecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC---CcceeecC
Confidence            99999999766544322                                     123445555566555   66778889


Q ss_pred             CCCCeEEE-EEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc-------CCCceEEEEEcCCCCCEEEEEECCCcEE
Q psy4578         727 HTAEVNCL-SFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES-------HKDEIFQVQWSPHNETILASSGTDRRLH  798 (860)
Q Consensus       727 h~~~I~sl-~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~-------h~~~V~~l~fsp~g~~lL~tgs~Dg~I~  798 (860)
                      |++.|.++ .|+  |- ++++|+.|.+|++||++-..+ +..+..       ..+.|.+++..|.|+ +|++|-.|....
T Consensus       182 htghilalyswn--~~-m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~  256 (350)
T KOG0641|consen  182 HTGHILALYSWN--GA-MFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCM  256 (350)
T ss_pred             CcccEEEEEEec--Cc-EEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCCceE
Confidence            99999876 453  54 799999999999999997765 444331       236799999999998 699999999999


Q ss_pred             EEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         799 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       799 iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +||++.              .+++..+..|...|.++.|+|...| +.+|+.|..|++
T Consensus       257 lydirg--------------~r~iq~f~phsadir~vrfsp~a~y-llt~syd~~ikl  299 (350)
T KOG0641|consen  257 LYDIRG--------------GRMIQRFHPHSADIRCVRFSPGAHY-LLTCSYDMKIKL  299 (350)
T ss_pred             EEEeeC--------------CceeeeeCCCccceeEEEeCCCceE-EEEecccceEEE
Confidence            999998              4567777889999999999999887 559999999987

>KOG0647|consensus

Probab=99.77  E-value=4.3e-17  Score=165.64  Aligned_cols=242  Identities=21%  Similarity=0.263  Sum_probs=181.4

Q ss_pred             eeeeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC
Q psy4578         586 LNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA  665 (860)
Q Consensus       586 ~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~  665 (860)
                      ..+++.|..+|+...+++-   +...........+.++|.+++|+. ++..+++|+.|+.+++||+.+++    ...+..
T Consensus        40 ~~~~~A~SWD~tVR~wevq---~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~Q----~~~v~~  111 (347)
T KOG0647|consen   40 DNLLAAGSWDGTVRIWEVQ---NSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASGQ----VSQVAA  111 (347)
T ss_pred             CceEEecccCCceEEEEEe---cCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCCC----eeeeee
Confidence            3455567777765554433   222233355667889999999995 78999999999999999999853    456778


Q ss_pred             CCCCeeEEEEccCCC-eEEEEEeCCCceeeeccccc------------------------ccCCCcEEEEeCCCCCCCCC
Q psy4578         666 HTAEVNCLSFNPYSE-YILATGSADKTQFEVEEEEE------------------------ENYDQKLMIWDTRSHNVSKP  720 (860)
Q Consensus       666 h~~~V~~l~~sp~g~-~llasgs~Dg~i~~~~~~~~------------------------~~~dg~I~iwDl~~~~~~~~  720 (860)
                      |.++|.++.|-+... .+|++|+.|.++..|+.+..                        +..+..|.+|+++.+.. ..
T Consensus       112 Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~t-e~  190 (347)
T KOG0647|consen  112 HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPT-EF  190 (347)
T ss_pred             cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcc-hh
Confidence            999999999986543 36899999999999988765                        24577788999876532 11


Q ss_pred             eeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-eeEEeccCCC---------ceEEEEEcCCCCCEEEE
Q psy4578         721 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-KLHSFESHKD---------EIFQVQWSPHNETILAS  790 (860)
Q Consensus       721 ~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~h~~---------~V~~l~fsp~g~~lL~t  790 (860)
                      ...-..-.-.++|++..++... .+.|+-.|.+.|..+..+.. .-..++.|..         .|++++|+|.... |+|
T Consensus       191 k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt-lvT  268 (347)
T KOG0647|consen  191 KRIESPLKWQTRCVACFQDKDG-FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT-LVT  268 (347)
T ss_pred             hhhcCcccceeeEEEEEecCCc-eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce-EEE
Confidence            1111123346889999998885 79999999999999887521 1345666652         5888999998775 899


Q ss_pred             EECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         791 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       791 gs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      +|.||++.+||-+...              .+.....|..+|++.+|+.+|.+++.+.|.|-
T Consensus       269 aGsDGtf~FWDkdar~--------------kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDW  316 (347)
T KOG0647|consen  269 AGSDGTFSFWDKDART--------------KLKTSETHPQPITCCSFNRNGSIFAYALGYDW  316 (347)
T ss_pred             ecCCceEEEecchhhh--------------hhhccCcCCCccceeEecCCCCEEEEEeeccc
Confidence            9999999999987633              23444568899999999999998888888773

>KOG0282|consensus

Probab=99.77  E-value=2.8e-18  Score=183.91  Aligned_cols=204  Identities=21%  Similarity=0.343  Sum_probs=171.7

Q ss_pred             ceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCee
Q psy4578         592 GYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVN  671 (860)
Q Consensus       592 G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~  671 (860)
                      |....+......+.+|+.++++....+.....++|+.|+|++.+.|++|+.|+.|+.||++++   +.++.+..|-+.|.
T Consensus       270 g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~---kvvqeYd~hLg~i~  346 (503)
T KOG0282|consen  270 GTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG---KVVQEYDRHLGAIL  346 (503)
T ss_pred             CCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch---HHHHHHHhhhhhee
Confidence            333333345556788999999999998888899999999988799999999999999999995   56788888999999


Q ss_pred             EEEEccCCCeEEEEEeCCCceeeeccccc----------------------------ccCCCcEEEEeCCCCCCCCCeee
Q psy4578         672 CLSFNPYSEYILATGSADKTQFEVEEEEE----------------------------ENYDQKLMIWDTRSHNVSKPSHT  723 (860)
Q Consensus       672 ~l~~sp~g~~llasgs~Dg~i~~~~~~~~----------------------------~~~dg~I~iwDl~~~~~~~~~~~  723 (860)
                      .+.|-++|++ +++.++|+++++|+....                            .+-++.|.++.+...-.......
T Consensus       347 ~i~F~~~g~r-FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~  425 (503)
T KOG0282|consen  347 DITFVDEGRR-FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKR  425 (503)
T ss_pred             eeEEccCCce-EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhh
Confidence            9999999997 899999999999987654                            13467788887655433344456


Q ss_pred             ecCCC--CCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         724 VDAHT--AEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       724 ~~~h~--~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      +.+|.  +.-..+.|||+|.+ |++|+.||.+.+||.++.+. +..+.+|...+..+.|+|....-++|||.||.|++||
T Consensus       426 feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~kl-~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  426 FEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTTKL-VSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             hcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhhhh-hhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            67774  45667899999996 99999999999999999887 8889999999999999999888899999999999996

>KOG0294|consensus

Probab=99.76  E-value=3.5e-17  Score=167.20  Aligned_cols=199  Identities=21%  Similarity=0.359  Sum_probs=152.4

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC--eEEEEEeCCCce
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE--YILATGSADKTQ  692 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~--~llasgs~Dg~i  692 (860)
                      .....|.++|++++.+   +.++|+|+.|-+|+|||+...   ..+..+..|.+.|+++.|.+...  + |++|+.||. 
T Consensus        37 F~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~---~qlg~ll~HagsitaL~F~~~~S~sh-LlS~sdDG~-  108 (362)
T KOG0294|consen   37 FAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKR---KQLGILLSHAGSITALKFYPPLSKSH-LLSGSDDGH-  108 (362)
T ss_pred             ccccccccceeEEEec---ceeEeccCCCCcEEEEeccch---hhhcceeccccceEEEEecCCcchhh-eeeecCCCc-
Confidence            3344677899999996   689999999999999999874   45667778999999999988653  4 889999998 


Q ss_pred             eeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC
Q psy4578         693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK  772 (860)
Q Consensus       693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~  772 (860)
                                    |.+|+...-   ..+.++++|.+.|+.++.||.|+ +..+-+.|+.++.||+-.++. ..... -.
T Consensus       109 --------------i~iw~~~~W---~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~-a~v~~-L~  168 (362)
T KOG0294|consen  109 --------------IIIWRVGSW---ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRV-AFVLN-LK  168 (362)
T ss_pred             --------------EEEEEcCCe---EEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCcc-ceeec-cC
Confidence                          999999875   77889999999999999999999 677889999999999987765 22221 11


Q ss_pred             CceEEEEEcCCCCC--------------------------------------EEEEEECCCcEEEEECCCCCcccccccc
Q psy4578         773 DEIFQVQWSPHNET--------------------------------------ILASSGTDRRLHVWDLSKIGEEQSTEDA  814 (860)
Q Consensus       773 ~~V~~l~fsp~g~~--------------------------------------lL~tgs~Dg~I~iWdl~~~~~~~~~~~~  814 (860)
                      ..-+.+.|+|.|.+                                      .|++|++|+.|.+||...          
T Consensus       169 ~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds----------  238 (362)
T KOG0294|consen  169 NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS----------  238 (362)
T ss_pred             CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC----------
Confidence            22223666666553                                      144555555555555443          


Q ss_pred             cCCCCccEEEecCccCceEEEEE--ccCCCeEEEEEeCCCeEee
Q psy4578         815 EDGPPELLFIHGGHTAKISDFSW--NPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       815 ~~~~~~~i~~~~~h~~~I~~i~~--spdg~~Llasgs~Dg~IrI  856 (860)
                          ..+...+.+|...|.++.+  .|++. +++|.|.||.|+|
T Consensus       239 ----~~~~~~~~AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~v  277 (362)
T KOG0294|consen  239 ----DTPLTEFLAHENRVKDIASYTNPEHE-YLVTASSDGFIKV  277 (362)
T ss_pred             ----CccceeeecchhheeeeEEEecCCce-EEEEeccCceEEE
Confidence                3456677899999999984  44554 6889999999986

>KOG0268|consensus

Probab=99.76  E-value=6.4e-18  Score=175.13  Aligned_cols=216  Identities=19%  Similarity=0.332  Sum_probs=163.7

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCC----------------------------
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH----------------------------  654 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~----------------------------  654 (860)
                      +.+|+-..+..+..+..|.+.|.++++..   ..+++++.|.+|+.|.+...                            
T Consensus        91 VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe  167 (433)
T KOG0268|consen   91 VKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGE  167 (433)
T ss_pred             EEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCc
Confidence            33344444455555666778999999973   66888899999999974321                            


Q ss_pred             -------CcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCC
Q psy4578         655 -------NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAH  727 (860)
Q Consensus       655 -------~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h  727 (860)
                             ....+++.+.-....+.++.|+|....+|++|+.|++               |.+||++++...+.+.    -
T Consensus       168 ~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs---------------IvLyD~R~~~Pl~KVi----~  228 (433)
T KOG0268|consen  168 QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS---------------IVLYDLRQASPLKKVI----L  228 (433)
T ss_pred             eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc---------------eEEEecccCCccceee----e
Confidence                   0011333333344567889999988889999999998               9999999874333222    1


Q ss_pred             CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578         728 TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       728 ~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~  807 (860)
                      +-.-+.++|+|.+- .+++|+.|..++.||++....++..+.+|.++|.++.|+|.|+. +++||.|.+|+||..+.+..
T Consensus       229 ~mRTN~IswnPeaf-nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~S  306 (433)
T KOG0268|consen  229 TMRTNTICWNPEAF-NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHS  306 (433)
T ss_pred             eccccceecCcccc-ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch-hccccccceEEEeecCCCcc
Confidence            34457899999554 69999999999999999999989999999999999999999997 89999999999999987443


Q ss_pred             ccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         808 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       808 ~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ...            + +......|.++.||.|.+| +++||+|+.||+
T Consensus       307 Rdi------------Y-htkRMq~V~~Vk~S~Dsky-i~SGSdd~nvRl  341 (433)
T KOG0268|consen  307 RDI------------Y-HTKRMQHVFCVKYSMDSKY-IISGSDDGNVRL  341 (433)
T ss_pred             hhh------------h-hHhhhheeeEEEEeccccE-EEecCCCcceee
Confidence            211            1 1112356999999999997 669999999985

>KOG0301|consensus

Probab=99.76  E-value=3.5e-17  Score=181.90  Aligned_cols=220  Identities=19%  Similarity=0.259  Sum_probs=177.9

Q ss_pred             EEeeccchhhhhh---hhhcccceee-eEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578         604 MYLENKTRAQICQ---LLDKLRLLID-VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       604 l~l~n~~~~~l~~---l~~~~~~V~~-v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  679 (860)
                      ..+|.....+...   ..++.+-|.. +++.+.++..+++|+.|+.|.+|...+   ..++.++.+|...|+|++-..++
T Consensus        37 ~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~---~~P~~~LkgH~snVC~ls~~~~~  113 (745)
T KOG0301|consen   37 VKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ---AEPLYTLKGHKSNVCSLSIGEDG  113 (745)
T ss_pred             eeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC---CCchhhhhccccceeeeecCCcC
Confidence            4555554444443   4456666666 888875667799999999999999987   56788999999999999988777


Q ss_pred             CeEEEEEeCCCceeeeccccc------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEE
Q psy4578         680 EYILATGSADKTQFEVEEEEE------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS  735 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~  735 (860)
                      .  +++||.|.+..+|.....                        ++.|..|++|.-.     ..+.++.+|+..|++++
T Consensus       114 ~--~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~-----~~l~tf~gHtD~VRgL~  186 (745)
T KOG0301|consen  114 T--LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG-----TLLKTFSGHTDCVRGLA  186 (745)
T ss_pred             c--eEecccccceEEecchhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCC-----chhhhhccchhheeeeE
Confidence            6  899999999999987654                        4568889999763     56778999999999999


Q ss_pred             EcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccccc
Q psy4578         736 FNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE  815 (860)
Q Consensus       736 ~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~  815 (860)
                      +-+++.  |++|+.||.|++|++ ++.. +..+.+|.+-|+++...+++. +++++|.|++++||+...  +        
T Consensus       187 vl~~~~--flScsNDg~Ir~w~~-~ge~-l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~e--~--------  251 (745)
T KOG0301|consen  187 VLDDSH--FLSCSNDGSIRLWDL-DGEV-LLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKDE--C--------  251 (745)
T ss_pred             EecCCC--eEeecCCceEEEEec-cCce-eeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecCc--e--------
Confidence            999876  789999999999999 4454 788899999999999666665 589999999999999773  2        


Q ss_pred             CCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         816 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       816 ~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                            .....--+..|+++++-++|.  +++|+.||.|||
T Consensus       252 ------~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrV  284 (745)
T KOG0301|consen  252 ------VQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRV  284 (745)
T ss_pred             ------EEEEecCccceEEEEEeeCCC--EEEeccCceEEE
Confidence                  222222234799999999999  678999999997

>KOG0300|consensus

Probab=99.76  E-value=7.5e-18  Score=171.25  Aligned_cols=220  Identities=22%  Similarity=0.356  Sum_probs=180.1

Q ss_pred             hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         614 ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      ...+.+|.+.|+.++-.. ...++.+++.|.+.+||.+++   +.++.++.+|.+.|+|+.|++.+. ++++++.|++-.
T Consensus       141 vre~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Es---g~CL~~Y~GH~GSVNsikfh~s~~-L~lTaSGD~taH  215 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLES---GACLATYTGHTGSVNSIKFHNSGL-LLLTASGDETAH  215 (481)
T ss_pred             hhhhcccccceeeehhhc-CCcceeecccccceeEEeecc---ccceeeecccccceeeEEeccccc-eEEEccCCcchH
Confidence            345667889999999986 677999999999999999999   477889999999999999999887 799999999977


Q ss_pred             eeccccc------------------ccCCCcEEEEeCC----CCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC
Q psy4578         694 EVEEEEE------------------ENYDQKLMIWDTR----SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK  751 (860)
Q Consensus       694 ~~~~~~~------------------~~~dg~I~iwDl~----~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg  751 (860)
                      +|.....                  ...|-...--|-.    ......++..+.+|.+.|.+..|-..|.. +++++.|.
T Consensus       216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDR  294 (481)
T KOG0300|consen  216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDR  294 (481)
T ss_pred             HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeeccc
Confidence            7762211                  0111111111110    01112356778999999999999998885 99999999


Q ss_pred             cEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCc
Q psy4578         752 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK  831 (860)
Q Consensus       752 ~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~  831 (860)
                      +..+||++++.. +..+.+|....+.++-+|..+ ++++++.|.+.++||++.  .           -..+..+.||...
T Consensus       295 TAnlwDVEtge~-v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFRe--a-----------I~sV~VFQGHtdt  359 (481)
T KOG0300|consen  295 TANLWDVETGEV-VNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFRE--A-----------IQSVAVFQGHTDT  359 (481)
T ss_pred             cceeeeeccCce-eccccCcchhccccccCCcce-EEEEeccCceeEeccchh--h-----------cceeeeecccccc
Confidence            999999999997 899999999999999999887 689999999999999985  1           2346678899999


Q ss_pred             eEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         832 ISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       832 I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |+++.|.-+.+  +++|++|.+|+|
T Consensus       360 VTS~vF~~dd~--vVSgSDDrTvKv  382 (481)
T KOG0300|consen  360 VTSVVFNTDDR--VVSGSDDRTVKV  382 (481)
T ss_pred             eeEEEEecCCc--eeecCCCceEEE
Confidence            99999999988  779999999987

>KOG0270|consensus

Probab=99.76  E-value=1.4e-17  Score=176.94  Aligned_cols=201  Identities=28%  Similarity=0.452  Sum_probs=167.8

Q ss_pred             eeeeEeecc------CCcEEEEEeCCCcEEEEEcCCCCcccCe------------------eeccCCCCCeeEEEEccCC
Q psy4578         624 LIDVAWHLL------HESLFGSVADDQKLMIWDTRSHNVSKPS------------------HTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       624 V~~v~~sp~------~~~~lasgs~DG~I~IWd~~~~~~~~~~------------------~~~~~h~~~V~~l~~sp~g  679 (860)
                      -.|+.|.-.      .++++|.|+.|..|.|||+.--....+.                  ....+|+..|.+++|+..-
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            367777421      3679999999999999998521111111                  1124688899999999999


Q ss_pred             CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578         680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR  759 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~  759 (860)
                      +++|++||.|.+               |++||+.++   ++..++..|++.|.++.|+|....++++|+.|++|.+.|+|
T Consensus       256 ~nVLaSgsaD~T---------------V~lWD~~~g---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  256 RNVLASGSADKT---------------VKLWDVDTG---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             ceeEEecCCCce---------------EEEEEcCCC---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence            999999999999               999999998   66677788999999999999988889999999999999999


Q ss_pred             CCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc
Q psy4578         760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP  839 (860)
Q Consensus       760 ~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp  839 (860)
                      .....-..+. -.+.|-.++|.|.....+++++.||+++-+|+|+.             ..++.+...|.++|++++++.
T Consensus       318 ~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-------------~~~vwt~~AHd~~ISgl~~n~  383 (463)
T KOG0270|consen  318 DPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-------------GKPVWTLKAHDDEISGLSVNI  383 (463)
T ss_pred             CccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCC-------------CCceeEEEeccCCcceEEecC
Confidence            6444233333 46789999999999988999999999999999983             357888999999999999999


Q ss_pred             CCCeEEEEEeCCCeEee
Q psy4578         840 NEPWVICSVSEDNIMQK  856 (860)
Q Consensus       840 dg~~Llasgs~Dg~IrI  856 (860)
                      .-+.+++++|.|++|++
T Consensus       384 ~~p~~l~t~s~d~~Vkl  400 (463)
T KOG0270|consen  384 QTPGLLSTASTDKVVKL  400 (463)
T ss_pred             CCCcceeeccccceEEE
Confidence            99999999999999986

>KOG0646|consensus

Probab=99.75  E-value=9.3e-17  Score=171.75  Aligned_cols=230  Identities=19%  Similarity=0.245  Sum_probs=180.0

Q ss_pred             EEEeeccchhhhh-hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQIC-QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~l~-~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .+.+|...+.... +..--+++|.++.-+| .+.+++.|+..|.+.+|.+.+|   ..+..+..|...|+|+.|+-||.+
T Consensus        62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG---~LL~v~~aHYQ~ITcL~fs~dgs~  137 (476)
T KOG0646|consen   62 LLHVWEILKKDQVVQYIVLPGPVHALASSN-LGYFLLAGTISGNLYLWELSSG---ILLNVLSAHYQSITCLKFSDDGSH  137 (476)
T ss_pred             cccccccCchhhhhhhcccccceeeeecCC-CceEEEeecccCcEEEEEeccc---cHHHHHHhhccceeEEEEeCCCcE
Confidence            4555655544433 3555678899999997 7888888889999999999995   556777899999999999999985


Q ss_pred             EEEEEeCCCceeeecccccccCCCcEEEEeCCC------CCCCCCeeeecCCCCCeEEEEEcCCC-CcEEEEeeCCCcEE
Q psy4578         682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRS------HNVSKPSHTVDAHTAEVNCLSFNPYS-EYILATGSADKTVA  754 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~------~~~~~~~~~~~~h~~~I~sl~~sp~g-~~llasgs~Dg~I~  754 (860)
                       +++||.||.               |.+|++..      .....++..+..|+-.|+++...+.| +-.++|+|.|.+++
T Consensus       138 -iiTgskDg~---------------V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k  201 (476)
T KOG0646|consen  138 -IITGSKDGA---------------VLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK  201 (476)
T ss_pred             -EEecCCCcc---------------EEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence             999999999               77776532      12447888999999999999887652 22488999999999


Q ss_pred             EEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc--cccccCCCCccEEEecCccC--
Q psy4578         755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS--TEDAEDGPPELLFIHGGHTA--  830 (860)
Q Consensus       755 IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~--~~~~~~~~~~~i~~~~~h~~--  830 (860)
                      +||+..+.. +.++. ....+.+++.+|-++. ++.|+.+|.|.+.++....-...  ...........+..+.||.+  
T Consensus       202 ~wdlS~g~L-Llti~-fp~si~av~lDpae~~-~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~  278 (476)
T KOG0646|consen  202 LWDLSLGVL-LLTIT-FPSSIKAVALDPAERV-VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES  278 (476)
T ss_pred             EEEecccee-eEEEe-cCCcceeEEEcccccE-EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence            999999986 44443 4678999999998875 88999999999999876542111  01111122345667778888  


Q ss_pred             ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         831 KISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       831 ~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .|++++.+-||. ++++|+.||.|.|
T Consensus       279 ~ITcLais~Dgt-lLlSGd~dg~Vcv  303 (476)
T KOG0646|consen  279 AITCLAISTDGT-LLLSGDEDGKVCV  303 (476)
T ss_pred             ceeEEEEecCcc-EEEeeCCCCCEEE
Confidence            999999999999 7889999999986

>KOG2096|consensus

Probab=99.75  E-value=6.6e-17  Score=164.94  Aligned_cols=183  Identities=14%  Similarity=0.325  Sum_probs=139.8

Q ss_pred             hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc--cCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         614 ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS--KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~--~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      +..+.+|.+.|++++|++ +|..|++++.|+.|++|++.+-...  +.++. ....+..+.+.|.||.+.++++.-...+
T Consensus        79 ~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCE
Confidence            455678889999999997 8999999999999999999863211  11111 1123456889999999887777766666


Q ss_pred             eeeeccccc---------------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeE
Q psy4578         692 QFEVEEEEE---------------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVN  732 (860)
Q Consensus       692 i~~~~~~~~---------------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~  732 (860)
                      ++++.....                                       .+.|..|.+|+++ +   +.+.++......-+
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G---q~L~~idtnq~~n~  232 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G---QLLQSIDTNQSSNY  232 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C---ceeeeecccccccc
Confidence            666654322                                       2457789999998 4   55566666666667


Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEeCCCCc-------eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         733 CLSFNPYSEYILATGSADKTVALWDLRNLK-------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       733 sl~~sp~g~~llasgs~Dg~I~IWDl~~~~-------~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ..+.||+|++ +++++..-.|++|.+--.+       ..+..+.+|.+.|..++|+++.+. ++|.+.||++++||++-
T Consensus       233 ~aavSP~GRF-ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r-~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  233 DAAVSPDGRF-IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR-AVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             ceeeCCCCcE-EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce-eEEEecCCcEEEeeccc
Confidence            7899999996 7888888889999863221       126778999999999999999987 88999999999999864

>KOG0639|consensus

Probab=99.74  E-value=2.5e-17  Score=176.35  Aligned_cols=221  Identities=18%  Similarity=0.305  Sum_probs=168.8

Q ss_pred             hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC--CCCCeeEEEEccCCCeEEEEEeCC
Q psy4578         612 AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA--HTAEVNCLSFNPYSEYILATGSAD  689 (860)
Q Consensus       612 ~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~--h~~~V~~l~~sp~g~~llasgs~D  689 (860)
                      .+...++.|..-|.++..+. ..+.+.||+. |.|+|||+.......++..+..  ....+.++...|||+. |++|+.-
T Consensus       410 arq~~tL~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrt-LivGGea  486 (705)
T KOG0639|consen  410 ARQINTLAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRT-LIVGGEA  486 (705)
T ss_pred             HHhhhhhccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCce-EEecccc
Confidence            34566778888888888885 6777888775 7899999986544444444433  3567999999999996 7778777


Q ss_pred             CceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec
Q psy4578         690 KTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE  769 (860)
Q Consensus       690 g~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~  769 (860)
                      .+               +.|||+..... +....+......+..++.+||.+ +.++|..||.|.|||+.+... +..+.
T Consensus       487 st---------------lsiWDLAapTp-rikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~-Vrqfq  548 (705)
T KOG0639|consen  487 ST---------------LSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTL-VRQFQ  548 (705)
T ss_pred             ce---------------eeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEccccee-eeccc
Confidence            77               99999987532 22333333445677899999998 688899999999999999887 99999


Q ss_pred             cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccccc-------------------C-------CCCccEE
Q psy4578         770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE-------------------D-------GPPELLF  823 (860)
Q Consensus       770 ~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~-------------------~-------~~~~~i~  823 (860)
                      +|...+.||..+++|.. |.|||-|++|+.||++.+...++-+...                   +       ....-.+
T Consensus       549 GhtDGascIdis~dGtk-lWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky  627 (705)
T KOG0639|consen  549 GHTDGASCIDISKDGTK-LWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY  627 (705)
T ss_pred             CCCCCceeEEecCCCce-eecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccce
Confidence            99999999999999987 8999999999999999977665433211                   1       1122234


Q ss_pred             EecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         824 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       824 ~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      .+..|.+.|.++.|.+.|+| +++.+.|+.+.
T Consensus       628 qlhlheScVLSlKFa~cGkw-fvStGkDnlLn  658 (705)
T KOG0639|consen  628 QLHLHESCVLSLKFAYCGKW-FVSTGKDNLLN  658 (705)
T ss_pred             eecccccEEEEEEecccCce-eeecCchhhhh
Confidence            45578899999999999997 55667776543

>KOG0647|consensus

Probab=99.73  E-value=2.6e-16  Score=160.03  Aligned_cols=200  Identities=19%  Similarity=0.283  Sum_probs=144.4

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      .+.|.+++|+|....++++||.||+||+|+++......+ .....|.++|.+++|+.+|. .+++|+.|+.         
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~---------   95 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQ---------   95 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc-eEEeeccCCc---------
Confidence            367999999998788888999999999999987422222 44567899999999999997 4888999998         


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCC-cEEEEeeCCCcEEEEeCCCCceeeEEecc---------
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE-YILATGSADKTVALWDLRNLKLKLHSFES---------  770 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~-~llasgs~Dg~I~IWDl~~~~~~~~~~~~---------  770 (860)
                            +++||+.++    ++..+..|.++|.++.|-+... .+|+|||.|.+|+.||.|.... +.++.-         
T Consensus        96 ------~k~wDL~S~----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p-v~t~~LPeRvYa~Dv  164 (347)
T KOG0647|consen   96 ------AKLWDLASG----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP-VATLQLPERVYAADV  164 (347)
T ss_pred             ------eEEEEccCC----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe-eeeeeccceeeehhc
Confidence                  999999986    4556778999999999976443 3689999999999999997654 222220         


Q ss_pred             --------------------------------CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578         771 --------------------------------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  818 (860)
Q Consensus       771 --------------------------------h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~  818 (860)
                                                      ..-.++|++..++... .+.|+-.|.+-+..+.......         
T Consensus       165 ~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv~iq~id~~~~~~---------  234 (347)
T KOG0647|consen  165 LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-FALGSIEGRVAIQYIDDPNPKD---------  234 (347)
T ss_pred             cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-eEeeeecceEEEEecCCCCccC---------
Confidence                                            1123555655555554 4566666666666665532211         


Q ss_pred             CccEEEecCcc---------CceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         819 PELLFIHGGHT---------AKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       819 ~~~i~~~~~h~---------~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                         -+.++.|.         -.|.+|+|+|... .++|.|.||++.+
T Consensus       235 ---nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~F  277 (347)
T KOG0647|consen  235 ---NFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSF  277 (347)
T ss_pred             ---ceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEE
Confidence               11222222         2578899999877 4778888888753

>KOG0267|consensus

Probab=99.73  E-value=5.1e-18  Score=189.00  Aligned_cols=199  Identities=24%  Similarity=0.473  Sum_probs=173.2

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      ...|...|.++..- ...+.+++|+.|-.+-+|.+..   ...+..+.+|..+|.|+.|+++.. ++++|+.+|+     
T Consensus        24 ~~~hsaav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~k---p~~i~S~~~hespIeSl~f~~~E~-Llaagsasgt-----   93 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGK---PNAITSLTGHESPIESLTFDTSER-LLAAGSASGT-----   93 (825)
T ss_pred             hhhhhhhhceeeee-ccceeeccCCCceeeccccccC---CchhheeeccCCcceeeecCcchh-hhcccccCCc-----
Confidence            34455566777663 3678899999999999999876   344556889999999999999777 7999999999     


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceE
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIF  776 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~  776 (860)
                                |++||+...   +.+.++.+|...+.++.|+|-+.| +|+|+.|+.+++||.+...+ .+.+.+|...|.
T Consensus        94 ----------iK~wDleeA---k~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~~vv~  158 (825)
T KOG0267|consen   94 ----------IKVWDLEEA---KIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGC-SHTYKSHTRVVD  158 (825)
T ss_pred             ----------eeeeehhhh---hhhhhhhccccCcceeeeccceEE-eccccccccceehhhhccCc-eeeecCCcceeE
Confidence                      999999987   677799999999999999999997 79999999999999997776 888999999999


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .+.|+|+|++ ++.|++|..++|||...+              .+...+.+|.+.+..+.|+|..- |+++||.|+++++
T Consensus       159 ~l~lsP~Gr~-v~~g~ed~tvki~d~~ag--------------k~~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f  222 (825)
T KOG0267|consen  159 VLRLSPDGRW-VASGGEDNTVKIWDLTAG--------------KLSKEFKSHEGKVQSLEFHPLEV-LLAPGSSDRTVRF  222 (825)
T ss_pred             EEeecCCCce-eeccCCcceeeeeccccc--------------ccccccccccccccccccCchhh-hhccCCCCceeee
Confidence            9999999996 899999999999999874              44556678999999999999865 8999999999986

>KOG1036|consensus

Probab=99.73  E-value=3.9e-16  Score=159.50  Aligned_cols=222  Identities=19%  Similarity=0.261  Sum_probs=169.9

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEE
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  683 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ll  683 (860)
                      +.+++.....+...+.+..++.+++|.+  ...+++|+-||.|+.+|+.++.    ...+..|..+|.|+.+++... .+
T Consensus        37 lrlYdv~~~~l~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~----~~~igth~~~i~ci~~~~~~~-~v  109 (323)
T KOG1036|consen   37 LRLYDVPANSLKLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGN----EDQIGTHDEGIRCIEYSYEVG-CV  109 (323)
T ss_pred             EEEEeccchhhhhheecCCceeeeeccC--CceEEEeccCceEEEEEecCCc----ceeeccCCCceEEEEeeccCC-eE
Confidence            4445555568888899999999999984  6778999999999999999853    345667999999999998666 59


Q ss_pred             EEEeCCCceeeeccccc------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC
Q psy4578         684 ATGSADKTQFEVEEEEE------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  739 (860)
Q Consensus       684 asgs~Dg~i~~~~~~~~------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~  739 (860)
                      ++|+.|++|.+|+....                        +..+..+.+||+++.....+.. -..-.-.++|+++-|+
T Consensus       110 IsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~r-eS~lkyqtR~v~~~pn  188 (323)
T KOG1036|consen  110 ISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRR-ESSLKYQTRCVALVPN  188 (323)
T ss_pred             EEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhc-cccceeEEEEEEEecC
Confidence            99999999999988732                        2456778899998764322111 1223457899999998


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCc---eeeEEeccCCC---------ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578         740 SEYILATGSADKTVALWDLRNLK---LKLHSFESHKD---------EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       740 g~~llasgs~Dg~I~IWDl~~~~---~~~~~~~~h~~---------~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~  807 (860)
                      +.- ++++|-||.|.+=.++...   ..-..|++|..         +|++++|+|-..+ |+|||.||.|.+||+.+.+.
T Consensus       189 ~eG-y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t-faTgGsDG~V~~Wd~~~rKr  266 (323)
T KOG1036|consen  189 GEG-YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT-FATGGSDGIVNIWDLFNRKR  266 (323)
T ss_pred             CCc-eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce-EEecCCCceEEEccCcchhh
Confidence            775 8899999999886665541   12345666652         7999999998765 99999999999999998544


Q ss_pred             ccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         808 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       808 ~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      .              ..+......|.+++|+.+|..|+++.+
T Consensus       267 l--------------~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  267 L--------------KQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             h--------------hhccCCCCceEEEEeccCCCeEEEEec
Confidence            3              334455678999999999996554444

>KOG1446|consensus

Probab=99.72  E-value=6.7e-16  Score=158.62  Aligned_cols=211  Identities=18%  Similarity=0.295  Sum_probs=159.6

Q ss_pred             eeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578         600 IEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       600 l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  679 (860)
                      ...+.|+.-..+.-+..+.+|...|++++.+| .++.+++++.|++|++||++..+.   ...+.  ...-..++|.|+|
T Consensus        79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~c---qg~l~--~~~~pi~AfDp~G  152 (311)
T KOG1446|consen   79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKC---QGLLN--LSGRPIAAFDPEG  152 (311)
T ss_pred             CCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCC---ceEEe--cCCCcceeECCCC
Confidence            45566666666777788888999999999999 668999999999999999997433   22222  2333567999999


Q ss_pred             CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeec---CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEE
Q psy4578         680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD---AHTAEVNCLSFNPYSEYILATGSADKTVALW  756 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~---~h~~~I~sl~~sp~g~~llasgs~Dg~I~IW  756 (860)
                      - ++|+|...+.               |++||++.-.. .+..++.   +.....+.+.|+|+|++ +..++..+.+++.
T Consensus       153 L-ifA~~~~~~~---------------IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~l  214 (311)
T KOG1446|consen  153 L-IFALANGSEL---------------IKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKS-ILLSTNASFIYLL  214 (311)
T ss_pred             c-EEEEecCCCe---------------EEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCE-EEEEeCCCcEEEE
Confidence            8 5888876666               99999987533 3333332   34678899999999997 5566778999999


Q ss_pred             eCCCCceeeEEeccCCCce---EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecC-ccCce
Q psy4578         757 DLRNLKLKLHSFESHKDEI---FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG-HTAKI  832 (860)
Q Consensus       757 Dl~~~~~~~~~~~~h~~~V---~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~-h~~~I  832 (860)
                      |.-.+.. ...+..+...-   -+.+|+|+|++ +++|+.||+|++|++.++..              +....+ +.+++
T Consensus       215 DAf~G~~-~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg~~--------------v~~~~~~~~~~~  278 (311)
T KOG1446|consen  215 DAFDGTV-KSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETGKK--------------VAVLRGPNGGPV  278 (311)
T ss_pred             EccCCcE-eeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCCcE--------------eeEecCCCCCCc
Confidence            9988886 67777665433   67889999996 77999999999999988543              344444 67889


Q ss_pred             EEEEEccCCCeEEEEEeCC
Q psy4578         833 SDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       833 ~~i~~spdg~~Llasgs~D  851 (860)
                      .++.|+|... ++++++..
T Consensus       279 ~~~~fnP~~~-mf~sa~s~  296 (311)
T KOG1446|consen  279 SCVRFNPRYA-MFVSASSN  296 (311)
T ss_pred             cccccCCcee-eeeecCce
Confidence            9999999876 45555543

>KOG0300|consensus

Probab=99.72  E-value=6.7e-17  Score=164.39  Aligned_cols=224  Identities=20%  Similarity=0.352  Sum_probs=174.1

Q ss_pred             ecccceeEEEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcC------CC-------------
Q psy4578         595 KGTHHIEEVMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTR------SH-------------  654 (860)
Q Consensus       595 ~Gs~~l~~il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~------~~-------------  654 (860)
                      .|+......-.+|..+.+. +.+..+|.+.|+++.|++ .+.++++++.|++.+||...      ..             
T Consensus       163 ~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e  241 (481)
T KOG0300|consen  163 CGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE  241 (481)
T ss_pred             eeecccccceeEEeeccccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence            3444444455666666555 555567889999999997 88999999999999999721      10             


Q ss_pred             ------------------CcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCC
Q psy4578         655 ------------------NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHN  716 (860)
Q Consensus       655 ------------------~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~  716 (860)
                                        ...-++..+.+|.+.|.+..|-..|+. +++++.|.+               ..+||++++ 
T Consensus       242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRT---------------AnlwDVEtg-  304 (481)
T KOG0300|consen  242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRT---------------ANLWDVETG-  304 (481)
T ss_pred             cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeecccc---------------ceeeeeccC-
Confidence                              011245667899999999999988885 899999999               999999998 


Q ss_pred             CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCc
Q psy4578         717 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR  796 (860)
Q Consensus       717 ~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~  796 (860)
                        ..+..+.||....+.++-+|..+ ++++++.|.+.++||.+.....+..|++|...|+++.|.-+.+  +++|++|.+
T Consensus       305 --e~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgSDDrT  379 (481)
T KOG0300|consen  305 --EVVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGSDDRT  379 (481)
T ss_pred             --ceeccccCcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecCCCce
Confidence              67788899999999999999888 6999999999999999987777889999999999999998876  789999999


Q ss_pred             EEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         797 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       797 I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |++||+++.......             .. ..+++..++.+..++ +++.--++..||+
T Consensus       380 vKvWdLrNMRsplAT-------------IR-tdS~~NRvavs~g~~-iIAiPhDNRqvRl  424 (481)
T KOG0300|consen  380 VKVWDLRNMRSPLAT-------------IR-TDSPANRVAVSKGHP-IIAIPHDNRQVRL  424 (481)
T ss_pred             EEEeeeccccCccee-------------ee-cCCccceeEeecCCc-eEEeccCCceEEE
Confidence            999999986543221             11 234555666665555 4545455555543

>KOG0308|consensus

Probab=99.72  E-value=3.4e-17  Score=180.68  Aligned_cols=198  Identities=20%  Similarity=0.376  Sum_probs=162.9

Q ss_pred             eeEeeccCCcEEEEEeCCCcEEEEEcCCCCc---ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578         626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNV---SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN  702 (860)
Q Consensus       626 ~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~---~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~  702 (860)
                      .+..+..++++|+||+.||.|++|++.....   ......+..|...|.++..+.+|+. +++++.|-+           
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~t-lIS~SsDtT-----------   96 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKT-LISASSDTT-----------   96 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCc-eEEecCCce-----------
Confidence            4555666788999999999999999875432   1236678889999999999999984 899999999           


Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce---------eeEEec-cCC
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL---------KLHSFE-SHK  772 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~---------~~~~~~-~h~  772 (860)
                          |++|+...+. .....++..|...|.|+++-...+.++|+|+-|+.|.+||++++..         ....+. ++.
T Consensus        97 ----VK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k  171 (735)
T KOG0308|consen   97 ----VKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK  171 (735)
T ss_pred             ----EEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence                9999998764 2566788899999999999444444799999999999999997622         122233 788


Q ss_pred             CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      ..|++++.++.|. ++++||..+.+++||.++.+.              +..+.||+..|..+..++||.. +.++|.||
T Consensus       172 ~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~k--------------imkLrGHTdNVr~ll~~dDGt~-~ls~sSDg  235 (735)
T KOG0308|consen  172 DSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCKK--------------IMKLRGHTDNVRVLLVNDDGTR-LLSASSDG  235 (735)
T ss_pred             cceeeeecCCcce-EEEecCcccceEEeccccccc--------------eeeeeccccceEEEEEcCCCCe-EeecCCCc
Confidence            8999999999995 799999999999999998443              4455699999999999999996 56999999


Q ss_pred             eEee
Q psy4578         853 IMQK  856 (860)
Q Consensus       853 ~IrI  856 (860)
                      +|++
T Consensus       236 tIrl  239 (735)
T KOG0308|consen  236 TIRL  239 (735)
T ss_pred             eEEe
Confidence            9986

>KOG0299|consensus

Probab=99.72  E-value=1.3e-16  Score=170.22  Aligned_cols=207  Identities=18%  Similarity=0.265  Sum_probs=168.7

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      .|...+.+++.++ ++.+|++|+.|..|.||+..+   ...+..+.+|.+.|.+++|-..-. -+.+++.|++       
T Consensus       200 ~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t---~ehv~~~~ghr~~V~~L~fr~gt~-~lys~s~Drs-------  267 (479)
T KOG0299|consen  200 GHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDT---LEHVKVFKGHRGAVSSLAFRKGTS-ELYSASADRS-------  267 (479)
T ss_pred             cccceeEEEEEcC-CCcEEEecCCCceEEEecCcc---cchhhcccccccceeeeeeecCcc-ceeeeecCCc-------
Confidence            6677899999998 899999999999999999998   466778899999999999976444 4889999999       


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEE
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV  778 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l  778 (860)
                              |++|++...   ..+.++.+|...|.++.-..-++ ++.+|+.|+++++|++....  ...+.+|.+.+-|+
T Consensus       268 --------vkvw~~~~~---s~vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv  333 (479)
T KOG0299|consen  268 --------VKVWSIDQL---SYVETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCV  333 (479)
T ss_pred             --------eEEEehhHh---HHHHHHhCCccceeeechhcccc-eEEeccccceeEEEeccccc--eeeeeCCCCCeeeE
Confidence                    999999876   67778899999999999888777 57788899999999995544  35677889999999


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|-.+..  +++|+.||.|.+|++.+.+..........-.+.+  ..-.+...|++++..|... |+++|+.+|.||+
T Consensus       334 ~~In~~H--fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~--~~~~~~~Witsla~i~~sd-L~asGS~~G~vrL  406 (479)
T KOG0299|consen  334 AFINDEH--FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL--DPVNGNFWITSLAVIPGSD-LLASGSWSGCVRL  406 (479)
T ss_pred             EEecccc--eeeccCCceEEEeeecccCceeEeeccccccCCc--cccccccceeeeEecccCc-eEEecCCCCceEE
Confidence            9987764  7899999999999999866654443322111111  1112335899999999988 8999999999985

>KOG0289|consensus

Probab=99.72  E-value=2.3e-16  Score=167.03  Aligned_cols=198  Identities=21%  Similarity=0.343  Sum_probs=165.0

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      ..+.++..+|. .+.+++|+.|..+.++|..+   .+.+..+.||.-.|+.+.++|+.. .+++++.|..          
T Consensus       220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s---~q~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~----------  284 (506)
T KOG0289|consen  220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPS---NQILATLKGHTKKITSVKFHKDLD-TVITASADEI----------  284 (506)
T ss_pred             CCeeEEeecCC-CCcceecCCCCceEEEecch---hhhhhhccCcceEEEEEEeccchh-heeecCCcce----------
Confidence            35777777773 67899999999999999988   466888999999999999999888 5899999998          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc--CCCceEEEE
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQ  779 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~--h~~~V~~l~  779 (860)
                           |+||.....   ........|.++|+.+..+|+|.| |++++.||+..+.|++++.. +.....  ..-.+++.+
T Consensus       285 -----i~vws~~~~---s~~~~~~~h~~~V~~ls~h~tgeY-llsAs~d~~w~Fsd~~~g~~-lt~vs~~~s~v~~ts~~  354 (506)
T KOG0289|consen  285 -----IRVWSVPLS---SEPTSSRPHEEPVTGLSLHPTGEY-LLSASNDGTWAFSDISSGSQ-LTVVSDETSDVEYTSAA  354 (506)
T ss_pred             -----EEeeccccc---cCccccccccccceeeeeccCCcE-EEEecCCceEEEEEccCCcE-EEEEeeccccceeEEee
Confidence                 999998765   344556789999999999999997 88999999999999999987 333332  334689999


Q ss_pred             EcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe-ecc
Q psy4578         780 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ-KPF  858 (860)
Q Consensus       780 fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir-I~f  858 (860)
                      |+|||- +|.+|..||.++|||+.+..              .+..+.+|.++|..++|+.+|-| ++++++|+.|+ ++.
T Consensus       355 fHpDgL-ifgtgt~d~~vkiwdlks~~--------------~~a~Fpght~~vk~i~FsENGY~-Lat~add~~V~lwDL  418 (506)
T KOG0289|consen  355 FHPDGL-IFGTGTPDGVVKIWDLKSQT--------------NVAKFPGHTGPVKAISFSENGYW-LATAADDGSVKLWDL  418 (506)
T ss_pred             EcCCce-EEeccCCCceEEEEEcCCcc--------------ccccCCCCCCceeEEEeccCceE-EEEEecCCeEEEEEe
Confidence            999996 79999999999999999843              34556789999999999999986 66888888555 465


Q ss_pred             CC
Q psy4578         859 KK  860 (860)
Q Consensus       859 ~k  860 (860)
                      +|
T Consensus       419 RK  420 (506)
T KOG0289|consen  419 RK  420 (506)
T ss_pred             hh
Confidence            54

>KOG0641|consensus

Probab=99.72  E-value=1e-15  Score=149.29  Aligned_cols=224  Identities=19%  Similarity=0.320  Sum_probs=167.4

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCC--cccCeeeccCCCCCeeEEEEccC---CCeEEEEEe-CCCc
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN--VSKPSHTVDAHTAEVNCLSFNPY---SEYILATGS-ADKT  691 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~--~~~~~~~~~~h~~~V~~l~~sp~---g~~llasgs-~Dg~  691 (860)
                      ..|.+.|.|.+|+| .+.++++|+.|.+|++...+...  ....-..+.-|.+.|..++|-.+   +..++++++ .|..
T Consensus        86 khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             cccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            34568999999999 89999999999999998776432  22233456678999999999542   444666665 3555


Q ss_pred             eeeeccccc--------------------------ccCCCcEEEEeCCCCCCCCCeee-ecC---CCCCeEEEEEcCCCC
Q psy4578         692 QFEVEEEEE--------------------------ENYDQKLMIWDTRSHNVSKPSHT-VDA---HTAEVNCLSFNPYSE  741 (860)
Q Consensus       692 i~~~~~~~~--------------------------~~~dg~I~iwDl~~~~~~~~~~~-~~~---h~~~I~sl~~sp~g~  741 (860)
                      |++-+....                          ++.|..|++||++-..+...+-. +.+   ..+.|.+++..|.|+
T Consensus       165 iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr  244 (350)
T KOG0641|consen  165 IYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR  244 (350)
T ss_pred             EEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc
Confidence            544333221                          45678899999987633222211 111   135789999999999


Q ss_pred             cEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCcc
Q psy4578         742 YILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL  821 (860)
Q Consensus       742 ~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~  821 (860)
                       ++++|-.|.+..+||++.++. ++.+..|...|.|+.|+|...+ +++|+.|..|++-|++..-. .         .-+
T Consensus       245 -ll~sg~~dssc~lydirg~r~-iq~f~phsadir~vrfsp~a~y-llt~syd~~ikltdlqgdla-~---------el~  311 (350)
T KOG0641|consen  245 -LLASGHADSSCMLYDIRGGRM-IQRFHPHSADIRCVRFSPGAHY-LLTCSYDMKIKLTDLQGDLA-H---------ELP  311 (350)
T ss_pred             -eeeeccCCCceEEEEeeCCce-eeeeCCCccceeEEEeCCCceE-EEEecccceEEEeecccchh-h---------cCc
Confidence             699999999999999999987 8999999999999999997765 88999999999999875211 0         123


Q ss_pred             EEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         822 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       822 i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +.....|...+..+.|+|..-. +++.+.|.++.+
T Consensus       312 ~~vv~ehkdk~i~~rwh~~d~s-fisssadkt~tl  345 (350)
T KOG0641|consen  312 IMVVAEHKDKAIQCRWHPQDFS-FISSSADKTATL  345 (350)
T ss_pred             eEEEEeccCceEEEEecCccce-eeeccCcceEEE
Confidence            4555678899999999998764 568888887754

>KOG0296|consensus

Probab=99.72  E-value=4.1e-16  Score=162.23  Aligned_cols=213  Identities=18%  Similarity=0.301  Sum_probs=172.3

Q ss_pred             cccccceeeeeeecceeecccceeEEEEeeccchhhhhhhh-hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc
Q psy4578         578 TQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLL-DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV  656 (860)
Q Consensus       578 ~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~-~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~  656 (860)
                      .+.|-.....+.-.|.+..++++...+.+|....+.....+ +.-..+.-++|+| ...+|+.|+.||.+-+|.+.++  
T Consensus       104 gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~--  180 (399)
T KOG0296|consen  104 GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQ--  180 (399)
T ss_pred             CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCc--
Confidence            34444455555555666666666666777766655544443 4567889999999 8999999999999999999874  


Q ss_pred             ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc------------------------------------
Q psy4578         657 SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE------------------------------------  700 (860)
Q Consensus       657 ~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~------------------------------------  700 (860)
                       ...+.+.+|..++++=.|.|+|+. +++|..||++++|+..++                                    
T Consensus       181 -~~~kv~~Gh~~~ct~G~f~pdGKr-~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~  258 (399)
T KOG0296|consen  181 -ALCKVMSGHNSPCTCGEFIPDGKR-ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC  258 (399)
T ss_pred             -ceeeEecCCCCCcccccccCCCce-EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence             456788899999999999999995 899999999999986543                                    


Q ss_pred             ---------------------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEE
Q psy4578         701 ---------------------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS  735 (860)
Q Consensus       701 ---------------------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~  735 (860)
                                                                   +.-||.|.|||+...    .++..-.|...|..+.
T Consensus       259 ~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~~l~  334 (399)
T KOG0296|consen  259 GVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVTKLK  334 (399)
T ss_pred             EEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----hhheeccCCCceEEEE
Confidence                                                         123788899998764    3344556889999999


Q ss_pred             EcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECC
Q psy4578         736 FNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  803 (860)
Q Consensus       736 ~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~  803 (860)
                      |-+ ..+ |++++.||.|+.||.|+++. ...+.+|...|.+++.+|+++. ++|+|.|++.+||+..
T Consensus       335 w~~-t~~-l~t~c~~g~v~~wDaRtG~l-~~~y~GH~~~Il~f~ls~~~~~-vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  335 WLN-TDY-LLTACANGKVRQWDARTGQL-KFTYTGHQMGILDFALSPQKRL-VVTVSDDNTALVFEVP  398 (399)
T ss_pred             EcC-cch-heeeccCceEEeeeccccce-EEEEecCchheeEEEEcCCCcE-EEEecCCCeEEEEecC
Confidence            998 555 88999999999999999998 8999999999999999999985 8999999999999864

>KOG2445|consensus

Probab=99.72  E-value=7.1e-16  Score=157.18  Aligned_cols=220  Identities=21%  Similarity=0.334  Sum_probs=160.4

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCC-CcccCeeeccCCCCCeeEEEEc-cCCCeEEEEEeCCCceeeec
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH-NVSKPSHTVDAHTAEVNCLSFN-PYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~-~~~~~~~~~~~h~~~V~~l~~s-p~g~~llasgs~Dg~i~~~~  696 (860)
                      +|.+-|.++.|.+ .|+.+|+|+.|++++|||..++ ....+....+.|.+.|..+.|. |.-..++|+++.|++     
T Consensus        11 ~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt-----   84 (361)
T KOG2445|consen   11 GHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT-----   84 (361)
T ss_pred             CCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc-----
Confidence            4556799999997 8999999999999999996543 2345566678899999999995 443448999999999     


Q ss_pred             ccccccCCCcEEEEeCCCC------CCCCCeeeecCCCCCeEEEEEcCCCC-cEEEEeeCCCcEEEEeCCCCce------
Q psy4578         697 EEEEENYDQKLMIWDTRSH------NVSKPSHTVDAHTAEVNCLSFNPYSE-YILATGSADKTVALWDLRNLKL------  763 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~------~~~~~~~~~~~h~~~I~sl~~sp~g~-~llasgs~Dg~I~IWDl~~~~~------  763 (860)
                                +.||.-...      .......++....+.|+.+.|.|... ..+|+++.||.+|||+.-....      
T Consensus        85 ----------v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L  154 (361)
T KOG2445|consen   85 ----------VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL  154 (361)
T ss_pred             ----------eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence                      777754211      12234456667778899999988532 2478888999999987421100      


Q ss_pred             ------------------------------------------------------------eeEEeccCCCceEEEEEcCC
Q psy4578         764 ------------------------------------------------------------KLHSFESHKDEIFQVQWSPH  783 (860)
Q Consensus       764 ------------------------------------------------------------~~~~~~~h~~~V~~l~fsp~  783 (860)
                                                                                  .+..+.+|..+|++++|.|+
T Consensus       155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence                                                                        02334468889999999996


Q ss_pred             C---CCEEEEEECCCcEEEEECCCCCcccccc------cccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         784 N---ETILASSGTDRRLHVWDLSKIGEEQSTE------DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       784 g---~~lL~tgs~Dg~I~iWdl~~~~~~~~~~------~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      -   -++|++++.|| |+||.+.........+      ....-+...+..+.+|.+.|+.+.|+-.|. +|++.|+||.|
T Consensus       235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdDG~V  312 (361)
T KOG2445|consen  235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDDGCV  312 (361)
T ss_pred             cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCCcee
Confidence            3   35799999999 9999998532111100      001123345667889999999999999999 79999999999


Q ss_pred             ee
Q psy4578         855 QK  856 (860)
Q Consensus       855 rI  856 (860)
                      |.
T Consensus       313 RL  314 (361)
T KOG2445|consen  313 RL  314 (361)
T ss_pred             ee
Confidence            85

>KOG4283|consensus

Probab=99.72  E-value=3.8e-16  Score=157.90  Aligned_cols=166  Identities=28%  Similarity=0.502  Sum_probs=138.9

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCCceeeec
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTQFEVE  696 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg~i~~~~  696 (860)
                      +|.-.|.++.|-|-+..+|.+++-|.+++|||.++-   +....++ .++.|.+-+|+|-  ...++|+|..|-.     
T Consensus        99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl---Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~-----  169 (397)
T KOG4283|consen   99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL---QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQ-----  169 (397)
T ss_pred             cceeeeeeeEEeeecCceeecccccceEEEeecccc---eeeEEee-cCceeehhhcChhhhcceEEEEecCCCc-----
Confidence            345679999999999999999999999999999883   3344443 3678888899885  3467888888777     


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeE----------
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH----------  766 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~----------  766 (860)
                                |++.|+.++   ...+++.||.+.|.++.|+|...++|+||+.||.|++||++....+..          
T Consensus       170 ----------VrLCDi~SG---s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~  236 (397)
T KOG4283|consen  170 ----------VRLCDIASG---SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRP  236 (397)
T ss_pred             ----------EEEEeccCC---cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccC
Confidence                      999999998   667889999999999999999999999999999999999986532222          


Q ss_pred             ----EeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578         767 ----SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       767 ----~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~  807 (860)
                          .-..|.+.|++++|+.+|++ +++++.|..+++|+..+++.
T Consensus       237 p~~~~n~ah~gkvngla~tSd~~~-l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  237 PILKTNTAHYGKVNGLAWTSDARY-LASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             ccccccccccceeeeeeecccchh-hhhccCccceEEeecccCcc
Confidence                23457789999999999997 88999999999999987654

>KOG0283|consensus

Probab=99.71  E-value=2.1e-16  Score=180.34  Aligned_cols=203  Identities=18%  Similarity=0.363  Sum_probs=156.2

Q ss_pred             hhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578         611 RAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK  690 (860)
Q Consensus       611 ~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg  690 (860)
                      ...++.+.+|.+.|.+++|+.  +++|++++.|.+||+|++...   .++..+ .|..-|+||+|+|-+...|++|+-||
T Consensus       359 ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~---~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~  432 (712)
T KOG0283|consen  359 EKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRK---ECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDG  432 (712)
T ss_pred             ccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCc---ceeeEE-ecCCeeEEEEecccCCCcEeeccccc
Confidence            456778889999999999994  789999999999999999873   556655 68999999999996666699999999


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec-
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE-  769 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~-  769 (860)
                      .               |+||++...   +.+ ....-..-|++++|.|+|++ .+.|+.+|.+++|+....+. ...+. 
T Consensus       433 K---------------vRiWsI~d~---~Vv-~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~-~~~~~I  491 (712)
T KOG0283|consen  433 K---------------VRLWSISDK---KVV-DWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKL-VSDFHI  491 (712)
T ss_pred             c---------------eEEeecCcC---eeE-eehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeE-EEeeeE
Confidence            8               999999875   222 23333478999999999996 88999999999999988765 22211 


Q ss_pred             --------cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCcc--CceEEEEEcc
Q psy4578         770 --------SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT--AKISDFSWNP  839 (860)
Q Consensus       770 --------~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~--~~I~~i~~sp  839 (860)
                              .|. .|+++.|.|....-++..+.|..|+|+|.+.......              ++|+.  ..=....|+.
T Consensus       492 ~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K--------------fKG~~n~~SQ~~Asfs~  556 (712)
T KOG0283|consen  492 RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK--------------FKGFRNTSSQISASFSS  556 (712)
T ss_pred             eeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh--------------hcccccCCcceeeeEcc
Confidence                    123 7999999986554356777899999999976443332              33322  1224568999


Q ss_pred             CCCeEEEEEeCCCeEee
Q psy4578         840 NEPWVICSVSEDNIMQK  856 (860)
Q Consensus       840 dg~~Llasgs~Dg~IrI  856 (860)
                      ||+++ +++++|.-|.|
T Consensus       557 Dgk~I-Vs~seDs~VYi  572 (712)
T KOG0283|consen  557 DGKHI-VSASEDSWVYI  572 (712)
T ss_pred             CCCEE-EEeecCceEEE
Confidence            99984 56778877765

>KOG0321|consensus

Probab=99.71  E-value=1.9e-16  Score=174.53  Aligned_cols=228  Identities=20%  Similarity=0.367  Sum_probs=173.7

Q ss_pred             hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         612 AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       612 ~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      .++.....|...|.++.|-| +...|++++.|.++++||+........ ..+.+|.+.|.+++|.|++..+|++|+.||.
T Consensus        91 ~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~-~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~  168 (720)
T KOG0321|consen   91 RQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGG-RLNLGHTGSVKSECFMPTNPAVFCTGGRDGE  168 (720)
T ss_pred             hhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecc-eeecccccccchhhhccCCCcceeeccCCCc
Confidence            34566678889999999999 889999999999999999998543222 2477999999999999999999999999999


Q ss_pred             eeeeccccc----------------------------------------------------------ccCCCcEEEEeCC
Q psy4578         692 QFEVEEEEE----------------------------------------------------------ENYDQKLMIWDTR  713 (860)
Q Consensus       692 i~~~~~~~~----------------------------------------------------------~~~dg~I~iwDl~  713 (860)
                      +.+|+....                                                          +..|+.|+|||++
T Consensus       169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR  248 (720)
T KOG0321|consen  169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR  248 (720)
T ss_pred             EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence            999986532                                                          1248899999998


Q ss_pred             CCCCC-----CCeeeecCC---CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-eeEEeccCCCc--eEEEEEcC
Q psy4578         714 SHNVS-----KPSHTVDAH---TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-KLHSFESHKDE--IFQVQWSP  782 (860)
Q Consensus       714 ~~~~~-----~~~~~~~~h---~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~h~~~--V~~l~fsp  782 (860)
                      .....     .....+..|   .-.+.++.....|.+++|+|. |++|+.|++.+... ++..+.++...  -..-..+|
T Consensus       249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp  327 (720)
T KOG0321|consen  249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP  327 (720)
T ss_pred             ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCC
Confidence            75321     112222223   346788888888999777776 99999999987543 34444444322  12234689


Q ss_pred             CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         783 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       783 ~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++.+ +++|+.|...++|.+.+.+.             ....+.||...|++++|.|..-.=+++|++|..++|
T Consensus       328 d~~~-l~SgSsd~~ayiw~vs~~e~-------------~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ki  387 (720)
T KOG0321|consen  328 DDCS-LLSGSSDEQAYIWVVSSPEA-------------PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKI  387 (720)
T ss_pred             CCce-EeccCCCcceeeeeecCccC-------------ChhhhhCcceEEEEEeeccccCCCceeeccCcceEE
Confidence            9986 88999999999999998443             344566899999999998855444778899988875

>KOG4328|consensus

Probab=99.71  E-value=2e-16  Score=168.60  Aligned_cols=210  Identities=18%  Similarity=0.258  Sum_probs=170.0

Q ss_pred             hcccceeeeEeeccCC-cEEEEEeCCCcEEEEEcCCC-CcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         619 DKLRLLIDVAWHLLHE-SLFGSVADDQKLMIWDTRSH-NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~-~~lasgs~DG~I~IWd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      -+.++|++++|+|... .++|+|+..|.|-+||+.+. ....-+..+..|.++|.++.|+|.+...+.+.+.||+     
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt-----  258 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT-----  258 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce-----
Confidence            3567899999999766 78999999999999999532 2233456678899999999999988777999999999     


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceE
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIF  776 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~  776 (860)
                                |+.-|++.... ..+.........++++.|+.+... ++.|..=|...+||.++.......+.-|...|+
T Consensus       259 ----------iR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~  326 (498)
T KOG4328|consen  259 ----------IRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT  326 (498)
T ss_pred             ----------eeeeeecchhh-HHHhhcCccceeeeeccccCCCcc-EEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence                      99999987532 444444445667888999988886 556666679999999988765666777888999


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +++++|..+++++|||.|++.+|||++.......          ++.....|...|.+..|||.|.. +++.+.|+.|||
T Consensus       327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----------p~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv  395 (498)
T KOG4328|consen  327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----------PFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRV  395 (498)
T ss_pred             eeecCCCCchheeecccCcceeeeehhhhcCCCC----------cceecccccceeeeeEEcCCCCc-eEeeccCCceEE
Confidence            9999999999999999999999999998543321          24455579999999999999887 668888888887

>KOG0299|consensus

Probab=99.70  E-value=1e-15  Score=163.47  Aligned_cols=237  Identities=15%  Similarity=0.238  Sum_probs=182.9

Q ss_pred             cccccceeeeeeecceeecccceeEEEEeeccchhhhhhh-hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc
Q psy4578         578 TQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQL-LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV  656 (860)
Q Consensus       578 ~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l-~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~  656 (860)
                      .+..-.+.+.....|-|..+++....+.+|+....+..+. .+|.+.|.+++|-. +.+-+++++.|++|++|+++.   
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~---  275 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQ---  275 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhH---
Confidence            4444455555555676666666666676777666655554 67889999999985 778899999999999999987   


Q ss_pred             ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578         657 SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  736 (860)
Q Consensus       657 ~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~  736 (860)
                      ...+.++.+|...|.+|.-..-++ .+.+|+.|++               +++|++..    .....+.+|.+.+-|++|
T Consensus       276 ~s~vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT---------------~rlwKi~e----esqlifrg~~~sidcv~~  335 (479)
T KOG0299|consen  276 LSYVETLYGHQDGVLGIDALSRER-CVTVGGRDRT---------------VRLWKIPE----ESQLIFRGGEGSIDCVAF  335 (479)
T ss_pred             hHHHHHHhCCccceeeechhcccc-eEEeccccce---------------eEEEeccc----cceeeeeCCCCCeeeEEE
Confidence            455778899999999999887777 5788889999               99999954    233456788899999999


Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC-----------CceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578         737 NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK-----------DEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       737 sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~-----------~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~  805 (860)
                      -.+..  +++||.||.|.+|++...+.....-.+|.           .+|++++..|..+ ++++|+.+|+|++|-+..+
T Consensus       336 In~~H--fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  336 INDEH--FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ecccc--eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCC
Confidence            87654  88999999999999988776222222332           3899999999887 6999999999999999875


Q ss_pred             CcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       806 ~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      -..          ..+++.+. -.+.|++++|+++|++++++.+...
T Consensus       413 ~r~----------i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEh  448 (479)
T KOG0299|consen  413 LRA----------INLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEH  448 (479)
T ss_pred             ccc----------cceeeecc-cccEEEEEEEccCCCEEEEeccccc
Confidence            331          23344444 5688999999999998888777553

>KOG0646|consensus

Probab=99.70  E-value=6.4e-16  Score=165.42  Aligned_cols=216  Identities=19%  Similarity=0.290  Sum_probs=171.1

Q ss_pred             cceeecccceeEEEEeeccchhhhhhhh-hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC------CCcccCeeec
Q psy4578         591 QGYFKGTHHIEEVMYLENKTRAQICQLL-DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS------HNVSKPSHTV  663 (860)
Q Consensus       591 ~G~~~Gs~~l~~il~l~n~~~~~l~~l~-~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~------~~~~~~~~~~  663 (860)
                      .|+|...+.....+|+|....+.++..+ .|..+|+|+.|+- ++.+|+||+.||.|.+|.+.+      ....++...+
T Consensus        92 ~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f  170 (476)
T KOG0646|consen   92 LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF  170 (476)
T ss_pred             CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence            5666655556677899999888887766 5679999999995 899999999999999998742      1245778889


Q ss_pred             cCCCCCeeEEEEccCC-CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCc
Q psy4578         664 DAHTAEVNCLSFNPYS-EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  742 (860)
Q Consensus       664 ~~h~~~V~~l~~sp~g-~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~  742 (860)
                      ..|.-+|+++...+.| +-.++|++.|.+               +++||+..+   ..+.++. ....+.+++.+|.+. 
T Consensus       171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t---------------~k~wdlS~g---~LLlti~-fp~si~av~lDpae~-  230 (476)
T KOG0646|consen  171 SDHTLSITDLQIGSGGTNARLYTASEDRT---------------IKLWDLSLG---VLLLTIT-FPSSIKAVALDPAER-  230 (476)
T ss_pred             ccCcceeEEEEecCCCccceEEEecCCce---------------EEEEEeccc---eeeEEEe-cCCcceeEEEccccc-
Confidence            9999999999987652 224899999999               999999987   4444443 467899999999888 


Q ss_pred             EEEEeeCCCcEEEEeCCCCc---------------eeeEEeccCCC--ceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578         743 ILATGSADKTVALWDLRNLK---------------LKLHSFESHKD--EIFQVQWSPHNETILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       743 llasgs~Dg~I~IWDl~~~~---------------~~~~~~~~h~~--~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~  805 (860)
                      .+..|+.+|.|.+.++....               ..+..+.+|.+  +|+|++.+-||. +|++|+.||.++|||+.+.
T Consensus       231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchH
Confidence            48899999999998875433               12556778988  999999999998 6999999999999999985


Q ss_pred             CcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578         806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  842 (860)
Q Consensus       806 ~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~  842 (860)
                      .+..              +.....++|+.+.+.|-.+
T Consensus       310 Q~iR--------------tl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  310 QCIR--------------TLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             HHHH--------------HHhhhccccceeEeecccc
Confidence            5443              3333467788888866544

>KOG0301|consensus

Probab=99.70  E-value=3.3e-16  Score=174.27  Aligned_cols=209  Identities=22%  Similarity=0.323  Sum_probs=171.4

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeE-EEEccCCCeEEEEEeCCCceeee
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNC-LSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~-l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      +.+|...|..++..+  +..++++|+||++++|+-..+.. -....+.+|.+.|.+ +++.+..+..+++|+.|+++.+|
T Consensus        10 l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~-l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~   86 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQY-LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF   86 (745)
T ss_pred             eccCccchheeEecC--CeEEeecCCCCceeeeeccCccc-ccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence            456778898888874  66899999999999999865432 334556677777777 88876444468999999999888


Q ss_pred             ccccc--------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC
Q psy4578         696 EEEEE--------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA  749 (860)
Q Consensus       696 ~~~~~--------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~  749 (860)
                      ...+.                          +++|..+++|-...     ....+.+|+..|.+++.-|.+.  ++|||.
T Consensus        87 ~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~-----l~~~l~gH~asVWAv~~l~e~~--~vTgsa  159 (745)
T KOG0301|consen   87 KLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE-----LVYSLQGHTASVWAVASLPENT--YVTGSA  159 (745)
T ss_pred             ecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh-----hhcccCCcchheeeeeecCCCc--EEeccC
Confidence            76653                          46788999997763     3445889999999999999884  789999


Q ss_pred             CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCcc
Q psy4578         750 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT  829 (860)
Q Consensus       750 Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~  829 (860)
                      |.+|++|.-  +.. +.++.+|...|+++++-+++.  +++|+.||.|+.|++..               .++....||+
T Consensus       160 DKtIklWk~--~~~-l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~g---------------e~l~~~~ght  219 (745)
T KOG0301|consen  160 DKTIKLWKG--GTL-LKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG---------------EVLLEMHGHT  219 (745)
T ss_pred             cceeeeccC--Cch-hhhhccchhheeeeEEecCCC--eEeecCCceEEEEeccC---------------ceeeeeeccc
Confidence            999999975  333 788999999999999999876  68999999999999843               5677888999


Q ss_pred             CceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         830 AKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       830 ~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .-|.++....++. +++++++|++++|
T Consensus       220 n~vYsis~~~~~~-~Ivs~gEDrtlri  245 (745)
T KOG0301|consen  220 NFVYSISMALSDG-LIVSTGEDRTLRI  245 (745)
T ss_pred             eEEEEEEecCCCC-eEEEecCCceEEE
Confidence            9999999777766 6889999999997

>KOG0307|consensus

Probab=99.69  E-value=8.7e-17  Score=188.26  Aligned_cols=214  Identities=27%  Similarity=0.468  Sum_probs=170.2

Q ss_pred             hhhhhhhcccceeeeEeeccCCc---EEEEEeCCCcEEEEEcCC---CCcccCeeeccCCCCCeeEEEEccCCCeEEEEE
Q psy4578         613 QICQLLDKLRLLIDVAWHLLHES---LFGSVADDQKLMIWDTRS---HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG  686 (860)
Q Consensus       613 ~l~~l~~~~~~V~~v~~sp~~~~---~lasgs~DG~I~IWd~~~---~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasg  686 (860)
                      +....+....+.++++|.+.+..   ++|.|..||.|.+||...   +.....+.+...|.+.|..+.|++...+++|+|
T Consensus        56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG  135 (1049)
T KOG0307|consen   56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASG  135 (1049)
T ss_pred             cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeecc
Confidence            45555666678899999986555   599999999999999875   333456677788999999999999999899999


Q ss_pred             eCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeE
Q psy4578         687 SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH  766 (860)
Q Consensus       687 s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~  766 (860)
                      +.||.               |.|||+...+...... -..-.+.|.+++|+..-.++|++|+.+|.+.|||++..+. +.
T Consensus       136 a~~ge---------------I~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-ii  198 (1049)
T KOG0307|consen  136 ADDGE---------------ILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-II  198 (1049)
T ss_pred             CCCCc---------------EEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-cc
Confidence            99998               9999998754322111 2235678999999999999999999999999999999865 55


Q ss_pred             EeccCCC--ceEEEEEcCCCCCEEEEEECC---CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCC
Q psy4578         767 SFESHKD--EIFQVQWSPHNETILASSGTD---RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE  841 (860)
Q Consensus       767 ~~~~h~~--~V~~l~fsp~g~~lL~tgs~D---g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg  841 (860)
                      .+..|.+  .+..++|+|++-.-+++++.|   -.|.+||++...             .++..+.+|...|.++.|++.+
T Consensus       199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-------------sP~k~~~~H~~GilslsWc~~D  265 (1049)
T KOG0307|consen  199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-------------SPLKILEGHQRGILSLSWCPQD  265 (1049)
T ss_pred             ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-------------CchhhhcccccceeeeccCCCC
Confidence            5554443  578899999987777777755   479999999733             3445567899999999999988


Q ss_pred             CeEEEEEeCCCeEee
Q psy4578         842 PWVICSVSEDNIMQK  856 (860)
Q Consensus       842 ~~Llasgs~Dg~IrI  856 (860)
                      ..++++++.|+.|-+
T Consensus       266 ~~lllSsgkD~~ii~  280 (1049)
T KOG0307|consen  266 PRLLLSSGKDNRIIC  280 (1049)
T ss_pred             chhhhcccCCCCeeE
Confidence            667889988887653

>KOG0293|consensus

Probab=99.69  E-value=7.5e-16  Score=162.02  Aligned_cols=203  Identities=16%  Similarity=0.273  Sum_probs=159.3

Q ss_pred             hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         612 AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       612 ~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      .....+..|...|.-+.|++ +|.+||+++.|.+..+|++......+...++.+|..+|.-+.|+||++++ ++|+.|..
T Consensus       215 qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryL-laCg~~e~  292 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYL-LACGFDEV  292 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeE-EecCchHh
Confidence            34444567889999999998 89999999999999999998765567788899999999999999999985 55555555


Q ss_pred             eeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccC
Q psy4578         692 QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH  771 (860)
Q Consensus       692 i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h  771 (860)
                                     +.+||..++.......  .+|...+.+++|.|||.. +++|+.|++|..||+++..  ...+++-
T Consensus       293 ---------------~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~--~~~W~gv  352 (519)
T KOG0293|consen  293 ---------------LSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNI--LGNWEGV  352 (519)
T ss_pred             ---------------eeeccCCcchhhhhcc--cCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcch--hhccccc
Confidence                           8999999985422221  235678999999999997 9999999999999998765  3445543


Q ss_pred             C-CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578         772 K-DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       772 ~-~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~  850 (860)
                      . ..|.+++.++||++ +++.+.|..|++++..+.....               ......+|++++.|.+|++.++.-..
T Consensus       353 r~~~v~dlait~Dgk~-vl~v~~d~~i~l~~~e~~~dr~---------------lise~~~its~~iS~d~k~~LvnL~~  416 (519)
T KOG0293|consen  353 RDPKVHDLAITYDGKY-VLLVTVDKKIRLYNREARVDRG---------------LISEEQPITSFSISKDGKLALVNLQD  416 (519)
T ss_pred             ccceeEEEEEcCCCcE-EEEEecccceeeechhhhhhhc---------------cccccCceeEEEEcCCCcEEEEEccc
Confidence            3 46999999999998 5677789999999987733321               22345789999999999976654444


Q ss_pred             CC
Q psy4578         851 DN  852 (860)
Q Consensus       851 Dg  852 (860)
                      .+
T Consensus       417 qe  418 (519)
T KOG0293|consen  417 QE  418 (519)
T ss_pred             Ce
Confidence            33

>KOG0303|consensus

Probab=99.69  E-value=6.6e-16  Score=161.86  Aligned_cols=207  Identities=19%  Similarity=0.359  Sum_probs=165.4

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCC----cccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK  690 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~----~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg  690 (860)
                      -...+|.++|.+++|+|.++..+|+||.|.+|.||++..+.    ...++..+.+|...|..++|+|...++|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            34568889999999999999999999999999999987532    33567788999999999999999999999999999


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES  770 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~  770 (860)
                      +               |.+||+.++   ..+.++. |...|.++.|+.+|. +++|++.|..|+|||.+++.. +..-.+
T Consensus       155 ~---------------v~iWnv~tg---eali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~-v~e~~~  213 (472)
T KOG0303|consen  155 T---------------VSIWNVGTG---EALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTV-VSEGVA  213 (472)
T ss_pred             e---------------EEEEeccCC---ceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcE-eeeccc
Confidence            8               999999998   5555666 999999999999999 499999999999999999987 666667


Q ss_pred             CCCc-eEEEEEcCCCCCEEEEEE---CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEE
Q psy4578         771 HKDE-IFQVQWSPHNETILASSG---TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC  846 (860)
Q Consensus       771 h~~~-V~~l~fsp~g~~lL~tgs---~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Lla  846 (860)
                      |.+. -..+.|-.+|. ++.||-   .+..+-+||..+.+....           ...+. ..+.|.-=-|++|...+..
T Consensus       214 heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~-----------~~elD-tSnGvl~PFyD~dt~ivYl  280 (472)
T KOG0303|consen  214 HEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIA-----------LQELD-TSNGVLLPFYDPDTSIVYL  280 (472)
T ss_pred             ccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcce-----------eEEec-cCCceEEeeecCCCCEEEE
Confidence            7653 34466777887 454443   678999999887554321           22222 2344555567888887778


Q ss_pred             EEeCCCeEe
Q psy4578         847 SVSEDNIMQ  855 (860)
Q Consensus       847 sgs~Dg~Ir  855 (860)
                      .|-.|+.||
T Consensus       281 ~GKGD~~IR  289 (472)
T KOG0303|consen  281 CGKGDSSIR  289 (472)
T ss_pred             EecCCcceE
Confidence            888888887

>KOG0274|consensus

Probab=99.69  E-value=1.4e-15  Score=175.64  Aligned_cols=188  Identities=29%  Similarity=0.475  Sum_probs=162.8

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeee-ccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHT-VDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~-~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      ...+.+..|.   +..+++++.|++|++|+..++   ..+.. +.+|.+.|.++++.. +..++++|+.|.+        
T Consensus       208 ~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~---~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t--------  272 (537)
T KOG0274|consen  208 DHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNG---YLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKT--------  272 (537)
T ss_pred             cchhhhheee---cCeEEecCCCceeEEeecccc---eEEEeeccCCCCCceeEEEec-CCCEEEEEecCCc--------
Confidence            3457777777   577899999999999999885   33444 899999999999987 4457999999999        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ  779 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~  779 (860)
                             +++||..++   .....+.+|...|.++...+.   .+++|+.|.+|++|++.++.. +..+.+|.++|+++.
T Consensus       273 -------~rvWd~~sg---~C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~  338 (537)
T KOG0274|consen  273 -------ERVWDCSTG---ECTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQ  338 (537)
T ss_pred             -------EEeEecCCC---cEEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcce-EEEeccccccEEEEE
Confidence                   999999988   788899999999999988653   578899999999999999887 888888999999999


Q ss_pred             EcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         780 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       780 fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .+  +. ++++|+.||+|++||+.+              ..++..+.+|.+.|+++.+... . .+++|+.|+.|++
T Consensus       339 ~~--~~-~lvsgs~d~~v~VW~~~~--------------~~cl~sl~gH~~~V~sl~~~~~-~-~~~Sgs~D~~Ikv  396 (537)
T KOG0274|consen  339 LD--EP-LLVSGSYDGTVKVWDPRT--------------GKCLKSLSGHTGRVYSLIVDSE-N-RLLSGSLDTTIKV  396 (537)
T ss_pred             ec--CC-EEEEEecCceEEEEEhhh--------------ceeeeeecCCcceEEEEEecCc-c-eEEeeeeccceEe
Confidence            98  54 589999999999999997              4567888899999999988876 4 5779999999986

>KOG1446|consensus

Probab=99.68  E-value=6.7e-15  Score=151.32  Aligned_cols=197  Identities=22%  Similarity=0.302  Sum_probs=151.7

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeC--CCceeeecc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA--DKTQFEVEE  697 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~--Dg~i~~~~~  697 (860)
                      ..+.|+++.|++ +|.++++++.|.++++||..++   +.+.++..+...+..+.|...... +..++.  |.+      
T Consensus        13 ~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g---~~~~ti~skkyG~~~~~Fth~~~~-~i~sStk~d~t------   81 (311)
T KOG1446|consen   13 TNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSG---KQVKTINSKKYGVDLACFTHHSNT-VIHSSTKEDDT------   81 (311)
T ss_pred             CCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCC---ceeeEeecccccccEEEEecCCce-EEEccCCCCCc------
Confidence            357899999997 7888999999999999999985   456677677778888999776665 344433  445      


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEE
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ  777 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~  777 (860)
                               |+..++.+.   +.++.+.||...|++++.+|-+. .+++++.|++|++||++..++ ...+.....  ..
T Consensus        82 ---------IryLsl~dN---kylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~c-qg~l~~~~~--pi  145 (311)
T KOG1446|consen   82 ---------IRYLSLHDN---KYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKC-QGLLNLSGR--PI  145 (311)
T ss_pred             ---------eEEEEeecC---ceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCC-ceEEecCCC--cc
Confidence                     999999887   88999999999999999999887 599999999999999997776 333332233  34


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         778 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       778 l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                      ++|+|.|- ++|++...+.|++||++..+..         +........+....++.+.|||||++++++...+..
T Consensus       146 ~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkg---------PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~  211 (311)
T KOG1446|consen  146 AAFDPEGL-IFALANGSELIKLYDLRSFDKG---------PFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFI  211 (311)
T ss_pred             eeECCCCc-EEEEecCCCeEEEEEecccCCC---------CceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcE
Confidence            88999996 5777777779999999985331         111111222456789999999999998877665533

>KOG0305|consensus

Probab=99.67  E-value=7.1e-16  Score=172.01  Aligned_cols=190  Identities=26%  Similarity=0.515  Sum_probs=155.3

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY  703 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~  703 (860)
                      .+=+.|+.  .+.+++|.. ..|.+|+..++.. ..+..  .+...|+++.|+++|.+ |++|..+|.            
T Consensus       180 ~nlldWss--~n~laValg-~~vylW~~~s~~v-~~l~~--~~~~~vtSv~ws~~G~~-LavG~~~g~------------  240 (484)
T KOG0305|consen  180 LNLLDWSS--ANVLAVALG-QSVYLWSASSGSV-TELCS--FGEELVTSVKWSPDGSH-LAVGTSDGT------------  240 (484)
T ss_pred             hhHhhccc--CCeEEEEec-ceEEEEecCCCce-EEeEe--cCCCceEEEEECCCCCE-EEEeecCCe------------
Confidence            34567884  667777654 4899999988643 22222  23789999999999996 999999998            


Q ss_pred             CCcEEEEeCCCCCCCCCeeeecC-CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC
Q psy4578         704 DQKLMIWDTRSHNVSKPSHTVDA-HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  782 (860)
Q Consensus       704 dg~I~iwDl~~~~~~~~~~~~~~-h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp  782 (860)
                         |.|||..+.   +.+..+.+ |...|.+++|+  +. ++.+|+.||.|..+|++........+.+|...|..+.|++
T Consensus       241 ---v~iwD~~~~---k~~~~~~~~h~~rvg~laW~--~~-~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~  311 (484)
T KOG0305|consen  241 ---VQIWDVKEQ---KKTRTLRGSHASRVGSLAWN--SS-VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP  311 (484)
T ss_pred             ---EEEEehhhc---cccccccCCcCceeEEEecc--Cc-eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence               999999876   55666777 99999999998  33 6899999999999999998874555889999999999999


Q ss_pred             CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe--CCCeEee
Q psy4578         783 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS--EDNIMQK  856 (860)
Q Consensus       783 ~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs--~Dg~IrI  856 (860)
                      ++.+ +++||.|+.+.|||...              ..+...+..|.+.|..++|+|-..-|||+|+  .|++|++
T Consensus       312 d~~~-lASGgnDN~~~Iwd~~~--------------~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f  372 (484)
T KOG0305|consen  312 DGNQ-LASGGNDNVVFIWDGLS--------------PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF  372 (484)
T ss_pred             CCCe-eccCCCccceEeccCCC--------------ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence            9986 99999999999999854              3456777899999999999998777888876  4555554

>KOG0306|consensus

Probab=99.67  E-value=1.9e-15  Score=169.32  Aligned_cols=199  Identities=23%  Similarity=0.350  Sum_probs=162.4

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      ....+|...|.+++++. +...+++| ..+.+++|+..+   .+++.++..  +.+.+..|.|.+++ +++|...|.   
T Consensus       367 i~~~GHR~dVRsl~vS~-d~~~~~Sg-a~~SikiWn~~t---~kciRTi~~--~y~l~~~Fvpgd~~-Iv~G~k~Ge---  435 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSS-DSILLASG-AGESIKIWNRDT---LKCIRTITC--GYILASKFVPGDRY-IVLGTKNGE---  435 (888)
T ss_pred             eeeccchhheeEEEeec-Cceeeeec-CCCcEEEEEccC---cceeEEecc--ccEEEEEecCCCce-EEEeccCCc---
Confidence            44567888999999995 55555555 467999999998   466777654  47899999998886 889999988   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc-----e-eeEEe
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK-----L-KLHSF  768 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~-----~-~~~~~  768 (860)
                                  +.+||+.+.   ..+.++.+|.+.|.+++.+|++.. ++|||.|.+|++||..-..     . .+..+
T Consensus       436 ------------l~vfdlaS~---~l~Eti~AHdgaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl  499 (888)
T KOG0306|consen  436 ------------LQVFDLASA---SLVETIRAHDGAIWSISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSL  499 (888)
T ss_pred             ------------eEEEEeehh---hhhhhhhccccceeeeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence                        999999887   556677899999999999999997 9999999999999964211     1 11111


Q ss_pred             c-----cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578         769 E-----SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW  843 (860)
Q Consensus       769 ~-----~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~  843 (860)
                      .     .-...|.|+.+||||++ |+.+--|+++++|-+++              .....++-||.-||.++..+||+. 
T Consensus       500 ~~~rtLel~ddvL~v~~Spdgk~-LaVsLLdnTVkVyflDt--------------lKFflsLYGHkLPV~smDIS~DSk-  563 (888)
T KOG0306|consen  500 KHTRTLELEDDVLCVSVSPDGKL-LAVSLLDNTVKVYFLDT--------------LKFFLSLYGHKLPVLSMDISPDSK-  563 (888)
T ss_pred             ccceEEeccccEEEEEEcCCCcE-EEEEeccCeEEEEEecc--------------eeeeeeecccccceeEEeccCCcC-
Confidence            1     13468999999999995 88888999999999998              345567789999999999999999 


Q ss_pred             EEEEEeCCCeEee
Q psy4578         844 VICSVSEDNIMQK  856 (860)
Q Consensus       844 Llasgs~Dg~IrI  856 (860)
                      +++|||.|..|+|
T Consensus       564 livTgSADKnVKi  576 (888)
T KOG0306|consen  564 LIVTGSADKNVKI  576 (888)
T ss_pred             eEEeccCCCceEE
Confidence            7899999999986

>KOG0290|consensus

Probab=99.67  E-value=1.6e-15  Score=153.49  Aligned_cols=205  Identities=22%  Similarity=0.365  Sum_probs=163.0

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      +..++++..|+..+.+++.+++-|.+..|||++++........+..|...|.+|+|...+..+|++.|.||+        
T Consensus       149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS--------  220 (364)
T KOG0290|consen  149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS--------  220 (364)
T ss_pred             cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc--------
Confidence            346899999999899999999999999999999864444556678899999999999999999999999999        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-CcEEEEeCCCCceeeEEeccCCCceEEE
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-KTVALWDLRNLKLKLHSFESHKDEIFQV  778 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g~I~IWDl~~~~~~~~~~~~h~~~V~~l  778 (860)
                             +++||++..+....+..-.....+...++|+++..+++||-..| ..|.|-|+|....++..+.+|.+.|+++
T Consensus       221 -------vRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgI  293 (364)
T KOG0290|consen  221 -------VRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGI  293 (364)
T ss_pred             -------EEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccce
Confidence                   99999998754333333333256778899999888778776555 5699999999998899999999999999


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578         779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                      +|.|.....++|||+|..+-+||+........      ..+.+.+.   .++.|..+.|++...--++.+
T Consensus       294 aWaPhS~~hictaGDD~qaliWDl~q~~~~~~------~dPilay~---a~~EVNqi~Ws~~~~Dwiai~  354 (364)
T KOG0290|consen  294 AWAPHSSSHICTAGDDCQALIWDLQQMPRENG------EDPILAYT---AGGEVNQIQWSSSQPDWIAIC  354 (364)
T ss_pred             EecCCCCceeeecCCcceEEEEecccccccCC------CCchhhhh---ccceeeeeeecccCCCEEEEE
Confidence            99999888899999999999999987443111      11222222   457899999997544334333

>KOG1036|consensus

Probab=99.67  E-value=3.4e-15  Score=152.69  Aligned_cols=203  Identities=18%  Similarity=0.310  Sum_probs=151.1

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      .+.|+++.|+| ..+.|++++.||++++||+....    +...-.|..++.+++|.++..  +++|+.||.         
T Consensus        13 ~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~----l~~~~~~~~plL~c~F~d~~~--~~~G~~dg~---------   76 (323)
T KOG1036|consen   13 EDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANS----LKLKFKHGAPLLDCAFADEST--IVTGGLDGQ---------   76 (323)
T ss_pred             hhceeeEEEcC-cCCcEEEEeccCcEEEEeccchh----hhhheecCCceeeeeccCCce--EEEeccCce---------
Confidence            36799999997 55556667799999999998742    233345889999999998554  899999998         


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEE
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW  780 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~f  780 (860)
                            |+.+|+.++.    ...+..|...|.|+.+++... .+++||.|++|++||.+.... ...+. ....|.++..
T Consensus        77 ------vr~~Dln~~~----~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~-~~~~d-~~kkVy~~~v  143 (323)
T KOG1036|consen   77 ------VRRYDLNTGN----EDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVV-VGTFD-QGKKVYCMDV  143 (323)
T ss_pred             ------EEEEEecCCc----ceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccccc-ccccc-cCceEEEEec
Confidence                  9999999863    345667999999999998766 499999999999999997443 33333 3347888776


Q ss_pred             cCCCCCEEEEEECCCcEEEEECCCCCccccccccc----------------------------------CCCCccEEEec
Q psy4578         781 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE----------------------------------DGPPELLFIHG  826 (860)
Q Consensus       781 sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~----------------------------------~~~~~~i~~~~  826 (860)
                      +  |. .|+.|+.|..+.+||+++.....+.....                                  +......+.++
T Consensus       144 ~--g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk  220 (323)
T KOG1036|consen  144 S--GN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK  220 (323)
T ss_pred             c--CC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE
Confidence            5  44 37889999999999999876554221110                                  00112233334


Q ss_pred             CccC---------ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         827 GHTA---------KISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       827 ~h~~---------~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .|..         +|.+|+|+|-.. .++||+.||.|.+
T Consensus       221 CHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~  258 (323)
T KOG1036|consen  221 CHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNI  258 (323)
T ss_pred             eeecccCCceEEEEeceeEeccccc-eEEecCCCceEEE
Confidence            4432         689999999977 4889999999875

>KOG0278|consensus

Probab=99.66  E-value=1.5e-15  Score=150.49  Aligned_cols=173  Identities=20%  Similarity=0.359  Sum_probs=140.7

Q ss_pred             EeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEE
Q psy4578         605 YLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA  684 (860)
Q Consensus       605 ~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~lla  684 (860)
                      +..+.........-+|.+.|..+.|+. ..+.+++++.|++||+||.+++..   ++++. ...+|+++..+++|++ +.
T Consensus       127 fdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~---v~sL~-~~s~VtSlEvs~dG~i-lT  200 (334)
T KOG0278|consen  127 FDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTE---VQSLE-FNSPVTSLEVSQDGRI-LT  200 (334)
T ss_pred             hhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcE---EEEEe-cCCCCcceeeccCCCE-EE
Confidence            344555667888889999999999997 777888889999999999999643   44442 3678999999999994 44


Q ss_pred             EEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee
Q psy4578         685 TGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK  764 (860)
Q Consensus       685 sgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~  764 (860)
                      ++ ..++               |.+||..+-   ..+..++ -...|.+...+|+.. ++++|+.|+.++.||..++.. 
T Consensus       201 ia-~gss---------------V~Fwdaksf---~~lKs~k-~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~TgeE-  258 (334)
T KOG0278|consen  201 IA-YGSS---------------VKFWDAKSF---GLLKSYK-MPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGEE-  258 (334)
T ss_pred             Ee-cCce---------------eEEeccccc---cceeecc-CccccccccccCCCc-eEEecCcceEEEEEeccCCce-
Confidence            43 4444               999999876   4444443 356788999999986 699999999999999999987 


Q ss_pred             eEEe-ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         765 LHSF-ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       765 ~~~~-~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      +..+ .+|.++|.|+.|+|+|. +.++|+.||+|++|.+...+
T Consensus       259 i~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  259 IGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             eeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCC
Confidence            5554 89999999999999998 58999999999999987644

>KOG0294|consensus

Probab=99.66  E-value=5.2e-15  Score=151.47  Aligned_cols=222  Identities=19%  Similarity=0.258  Sum_probs=158.3

Q ss_pred             cccccCCCCCcccccceeeeeeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccC-CcEEEEEeCCCcE
Q psy4578         568 PVFRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLH-ESLFGSVADDQKL  646 (860)
Q Consensus       568 ~~f~~l~a~~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~-~~~lasgs~DG~I  646 (860)
                      |.|....-......+...+.+++.|.     ..+.+..++...+.++..+..|.+.|+++.|.++- .+.|++|+.||.|
T Consensus        35 ~lF~~~aH~~sitavAVs~~~~aSGs-----sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVSGPYVASGS-----SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             ccccccccccceeEEEecceeEeccC-----CCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence            44443332333344455555554442     23334444555667777788888999999998732 2379999999999


Q ss_pred             EEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc------------------------
Q psy4578         647 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN------------------------  702 (860)
Q Consensus       647 ~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~------------------------  702 (860)
                      .+|+...   +..+.++++|.+.|+.++.+|.|+ +.++-+.|+.+..|++..+..                        
T Consensus       110 ~iw~~~~---W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  110 IIWRVGS---WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV  185 (362)
T ss_pred             EEEEcCC---eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence            9999987   677899999999999999999998 688888999988887655411                        


Q ss_pred             -CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEE-
Q psy4578         703 -YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW-  780 (860)
Q Consensus       703 -~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~f-  780 (860)
                       ....|-+|.+.+...   ... ......+.|+.|...+  .+++|+.|+.|.+||.+.... ...+.+|...|.++.+ 
T Consensus       186 ~~~~~i~i~q~d~A~v---~~~-i~~~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds~~~-~~~~~AH~~RVK~i~~~  258 (362)
T KOG0294|consen  186 SGRNKIDIYQLDNASV---FRE-IENPKRILCATFLDGS--ELLVGGDNEWISLKDTDSDTP-LTEFLAHENRVKDIASY  258 (362)
T ss_pred             EeccEEEEEecccHhH---hhh-hhccccceeeeecCCc--eEEEecCCceEEEeccCCCcc-ceeeecchhheeeeEEE
Confidence             112234444433211   111 1123456777777544  388999999999999998665 8889999999999984 


Q ss_pred             -cCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         781 -SPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       781 -sp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                       +|++. +|+|+|.||.|++||++...
T Consensus       259 ~~~~~~-~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  259 TNPEHE-YLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             ecCCce-EEEEeccCceEEEEEccccc
Confidence             45665 69999999999999998753

>KOG1539|consensus

Probab=99.66  E-value=6.9e-15  Score=166.70  Aligned_cols=274  Identities=19%  Similarity=0.282  Sum_probs=194.6

Q ss_pred             cccCCCCCcccccceeeeeeecceeecccceeEEEEeeccchhhhhhhhhcc-cceeeeEeeccCCcEEEEEeCCCcEEE
Q psy4578         570 FRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKL-RLLIDVAWHLLHESLFGSVADDQKLMI  648 (860)
Q Consensus       570 f~~l~a~~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~-~~V~~v~~sp~~~~~lasgs~DG~I~I  648 (860)
                      |...........-...+..++.|..+|.      +.+.|....++...+.+. +.|++++|..++..++++|+..|.+.+
T Consensus       198 f~~~~s~IT~ieqsPaLDVVaiG~~~G~------ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~  271 (910)
T KOG1539|consen  198 FQEFFSRITAIEQSPALDVVAIGLENGT------VIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF  271 (910)
T ss_pred             ecccccceeEeccCCcceEEEEeccCce------EEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence            3333333333444556667778877776      445577778888888885 999999999877788999999999999


Q ss_pred             EEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc----------------------------
Q psy4578         649 WDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE----------------------------  700 (860)
Q Consensus       649 Wd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~----------------------------  700 (860)
                      ||++....  .......|.+.|....|.|... ++++++.|.+..+|..+..                            
T Consensus       272 wDLe~kkl--~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~  348 (910)
T KOG1539|consen  272 WDLEKKKL--INVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH  348 (910)
T ss_pred             EEcCCCee--eeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence            99987422  1222346777777777777554 6777777776655543310                            


Q ss_pred             ------------------------------------------------------------c---------cCCCcEEEEe
Q psy4578         701 ------------------------------------------------------------E---------NYDQKLMIWD  711 (860)
Q Consensus       701 ------------------------------------------------------------~---------~~dg~I~iwD  711 (860)
                                                                                  +         ..+..++.|+
T Consensus       349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~  428 (910)
T KOG1539|consen  349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN  428 (910)
T ss_pred             EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence                                                                        0         0122356677


Q ss_pred             CCCCCCCCCee---eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe---ccCCCceEEEEEcCCCC
Q psy4578         712 TRSHNVSKPSH---TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPHNE  785 (860)
Q Consensus       712 l~~~~~~~~~~---~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~---~~h~~~V~~l~fsp~g~  785 (860)
                      .++...++.+.   .++.....+++++.++.|++ .+.|...|.|-+|++.++.. ...+   ..|.++|++++....++
T Consensus       429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF-~~IG~S~G~Id~fNmQSGi~-r~sf~~~~ah~~~V~gla~D~~n~  506 (910)
T KOG1539|consen  429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNF-VFIGYSKGTIDRFNMQSGIH-RKSFGDSPAHKGEVTGLAVDGTNR  506 (910)
T ss_pred             ccCcccccEEecCccccccCcceEEEEEeccCce-EEEeccCCeEEEEEcccCee-ecccccCccccCceeEEEecCCCc
Confidence            66543222111   11223467899999999996 77889999999999999886 6666   58999999999988887


Q ss_pred             CEEEEEECCCcEEEEECCCCCccccccccc---------------------------CCCCccEEEecCccCceEEEEEc
Q psy4578         786 TILASSGTDRRLHVWDLSKIGEEQSTEDAE---------------------------DGPPELLFIHGGHTAKISDFSWN  838 (860)
Q Consensus       786 ~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~---------------------------~~~~~~i~~~~~h~~~I~~i~~s  838 (860)
                       ++++++.+|.+.+||+.+......+....                           ....+.++.+.||.+.|++++||
T Consensus       507 -~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS  585 (910)
T KOG1539|consen  507 -LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS  585 (910)
T ss_pred             -eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence             58999999999999998865333322111                           12334555667999999999999


Q ss_pred             cCCCeEEEEEeCCCeEee
Q psy4578         839 PNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       839 pdg~~Llasgs~Dg~IrI  856 (860)
                      |||+| +++++.|++||+
T Consensus       586 ~DgrW-lisasmD~tIr~  602 (910)
T KOG1539|consen  586 PDGRW-LISASMDSTIRT  602 (910)
T ss_pred             CCCcE-EEEeecCCcEEE
Confidence            99998 669999999985

>KOG0643|consensus

Probab=99.66  E-value=1.1e-15  Score=153.01  Aligned_cols=207  Identities=18%  Similarity=0.243  Sum_probs=148.4

Q ss_pred             eecceeecccceeEEEEee-ccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC
Q psy4578         589 FKQGYFKGTHHIEEVMYLE-NKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT  667 (860)
Q Consensus       589 l~~G~~~Gs~~l~~il~l~-n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~  667 (860)
                      ...|.+.-+........+| ..+...+-...+|.+.|+||..+. +...+++|+.|.++++||+++|+.   +..++ ..
T Consensus        19 N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~---la~~k-~~   93 (327)
T KOG0643|consen   19 NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQ---LATWK-TN   93 (327)
T ss_pred             cCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCCCcE---EEEee-cC
Confidence            3344443333333333333 345566667778889999999985 788999999999999999999643   44433 35


Q ss_pred             CCeeEEEEccCCCeEEEEEeC----CCceee--ecccc----------------------------c----ccCCCcEEE
Q psy4578         668 AEVNCLSFNPYSEYILATGSA----DKTQFE--VEEEE----------------------------E----ENYDQKLMI  709 (860)
Q Consensus       668 ~~V~~l~~sp~g~~llasgs~----Dg~i~~--~~~~~----------------------------~----~~~dg~I~i  709 (860)
                      .+|..+.|+++|+.++++...    .+.|.+  .+...                            .    +..+|.|.+
T Consensus        94 ~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~  173 (327)
T KOG0643|consen   94 SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISI  173 (327)
T ss_pred             CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEE
Confidence            678888888888754444311    111111  11111                            0    356788999


Q ss_pred             EeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee-------------------------
Q psy4578         710 WDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-------------------------  764 (860)
Q Consensus       710 wDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~-------------------------  764 (860)
                      ||.+++.  ..+.+...|...|+.++++|+..+ ++|||.|.+-++||.++....                         
T Consensus       174 ~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgG  250 (327)
T KOG0643|consen  174 YDARTGK--ELVDSDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGG  250 (327)
T ss_pred             EEcccCc--eeeechhhhccccccccccCCcce-EEecccCccceeeeccceeeEEEeeecccccceecccccceEEecC
Confidence            9999873  445556779999999999999996 999999999999998764321                         


Q ss_pred             -----------------------------eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         765 -----------------------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       765 -----------------------------~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                                                   +...++|-++|++++|+|+|+. .++||.||.|++.-+..
T Consensus       251 GqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks-YsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  251 GQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS-YSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             CceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc-cccCCCCceEEEEEecc
Confidence                                         3345568899999999999985 89999999999987654

>KOG0290|consensus

Probab=99.65  E-value=3.7e-15  Score=150.76  Aligned_cols=211  Identities=19%  Similarity=0.342  Sum_probs=166.4

Q ss_pred             hhhhcccceeeeEeeccC----CcEEEEEeCCCcEEEEEcCCCCc-ccCee-----eccCCCCCeeEEEEccCCCeEEEE
Q psy4578         616 QLLDKLRLLIDVAWHLLH----ESLFGSVADDQKLMIWDTRSHNV-SKPSH-----TVDAHTAEVNCLSFNPYSEYILAT  685 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~----~~~lasgs~DG~I~IWd~~~~~~-~~~~~-----~~~~h~~~V~~l~~sp~g~~llas  685 (860)
                      ..+.|.-+++.+.|.|+.    ..+|||++  ..+|+|.+...+. ..+..     .-..+..++++..|+.-..+++.+
T Consensus        91 a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt  168 (364)
T KOG0290|consen   91 ANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT  168 (364)
T ss_pred             CCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe
Confidence            347888999999999953    24566654  3799999874221 11111     123456799999999988888999


Q ss_pred             EeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceee
Q psy4578         686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL  765 (860)
Q Consensus       686 gs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~  765 (860)
                      ++-|-+               +.|||++++........+-+|..+|..++|...+..+||+.+.||++|+||+|......
T Consensus       169 SSiDTT---------------CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST  233 (364)
T KOG0290|consen  169 SSIDTT---------------CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST  233 (364)
T ss_pred             ecccCe---------------EEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce
Confidence            999999               99999998743334556778999999999999888899999999999999999877643


Q ss_pred             EEecc--CCCceEEEEEcCCCCCEEEEEECC-CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578         766 HSFES--HKDEIFQVQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  842 (860)
Q Consensus       766 ~~~~~--h~~~V~~l~fsp~g~~lL~tgs~D-g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~  842 (860)
                      ..++.  ...+...++|++...++++|-..| ..|.|.|++.             +..++..+.+|.+.|.+++|.|...
T Consensus       234 IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~-------------P~tpva~L~~H~a~VNgIaWaPhS~  300 (364)
T KOG0290|consen  234 IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV-------------PCTPVARLRNHQASVNGIAWAPHSS  300 (364)
T ss_pred             EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC-------------CCcceehhhcCcccccceEecCCCC
Confidence            44443  246788899999888778887655 5799999997             3456788899999999999999988


Q ss_pred             eEEEEEeCCCeEee
Q psy4578         843 WVICSVSEDNIMQK  856 (860)
Q Consensus       843 ~Llasgs~Dg~IrI  856 (860)
                      .-++++|+|..+-|
T Consensus       301 ~hictaGDD~qali  314 (364)
T KOG0290|consen  301 SHICTAGDDCQALI  314 (364)
T ss_pred             ceeeecCCcceEEE
Confidence            88999999987654

>KOG4378|consensus

Probab=99.65  E-value=1.9e-15  Score=162.03  Aligned_cols=195  Identities=21%  Similarity=0.374  Sum_probs=153.8

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN  702 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~  702 (860)
                      .-.|++... ...++++|+..|.|+|||++.   ..+.+.+++|...|+++.++..+.| +|+++..|.           
T Consensus        81 ~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~---kl~hr~lkdh~stvt~v~YN~~Dey-iAsvs~gGd-----------  144 (673)
T KOG4378|consen   81 NAFCVACAS-QSLYEISGGQSGCVKIWDLRA---KLIHRFLKDHQSTVTYVDYNNTDEY-IASVSDGGD-----------  144 (673)
T ss_pred             hHHHHhhhh-cceeeeccCcCceeeehhhHH---HHHhhhccCCcceeEEEEecCCcce-eEEeccCCc-----------
Confidence            344454443 347899999999999999986   3556778899999999999998887 899988887           


Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCC-CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEc
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAH-TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS  781 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h-~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fs  781 (860)
                          |.|..+.++.   ....+... ...|.-+.|+|..+++|.+++.+|.|.+||+............|..+...++|+
T Consensus       145 ----iiih~~~t~~---~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfs  217 (673)
T KOG4378|consen  145 ----IIIHGTKTKQ---KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFS  217 (673)
T ss_pred             ----EEEEecccCc---cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceec
Confidence                8899888863   23334333 344668999999999999999999999999998887566667899999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         782 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       782 p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      |..+.+|++.|.|..|.+||++......          .+     ....+.+.++|+++|.+|.++.+.+.++.
T Consensus       218 psne~l~vsVG~Dkki~~yD~~s~~s~~----------~l-----~y~~Plstvaf~~~G~~L~aG~s~G~~i~  276 (673)
T KOG4378|consen  218 PSNEALLVSVGYDKKINIYDIRSQASTD----------RL-----TYSHPLSTVAFSECGTYLCAGNSKGELIA  276 (673)
T ss_pred             CCccceEEEecccceEEEeecccccccc----------ee-----eecCCcceeeecCCceEEEeecCCceEEE
Confidence            9999999999999999999998633211          11     23567899999999997655555554444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.65  E-value=2.3e-14  Score=155.14  Aligned_cols=230  Identities=10%  Similarity=0.120  Sum_probs=153.4

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      .+++|+....+....+.....+.+++|+|++..++++++.++.|++||..+++   ....+..+. .+..++|+|+++.+
T Consensus        12 ~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~-~~~~~~~~~~g~~l   87 (300)
T TIGR03866        12 TISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VIGTLPSGP-DPELFALHPNGKIL   87 (300)
T ss_pred             EEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc---EEEeccCCC-CccEEEECCCCCEE
Confidence            45555655555555555556678899998444455777889999999998753   233343333 35678999999977


Q ss_pred             EEEEeCCCceeeecccccc--------------------------cCC-CcEEEEeCCCCCCCCCeeeecCCCCCeEEEE
Q psy4578         683 LATGSADKTQFEVEEEEEE--------------------------NYD-QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS  735 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~--------------------------~~d-g~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~  735 (860)
                      +++++.++.+.+|+.....                          ..+ ..+.+||..+.   ....... ......+++
T Consensus        88 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~---~~~~~~~-~~~~~~~~~  163 (300)
T TIGR03866        88 YIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY---EIVDNVL-VDQRPRFAE  163 (300)
T ss_pred             EEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC---eEEEEEE-cCCCccEEE
Confidence            7777778898888765421                          011 22455666554   2222221 233457899


Q ss_pred             EcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC-------CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         736 FNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK-------DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       736 ~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~-------~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      |+|+|..+++++..+|.|.+||++++.. +..+..+.       .....++|+|+|+.++++.+.++.+.+||+.+.+..
T Consensus       164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~  242 (300)
T TIGR03866       164 FTADGKELWVSSEIGGTVSVIDVATRKV-IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL  242 (300)
T ss_pred             ECCCCCEEEEEcCCCCEEEEEEcCccee-eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            9999997556777799999999998765 44333211       123568899999976666667788999998764321


Q ss_pred             cccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         809 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       809 ~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                                    ... .+...+.+++|+|+|.+++++++.++.|+|
T Consensus       243 --------------~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v  275 (300)
T TIGR03866       243 --------------DYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSV  275 (300)
T ss_pred             --------------EEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEE
Confidence                          111 133468899999999987766677887775

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639|consensus

Probab=99.64  E-value=1.4e-15  Score=163.03  Aligned_cols=199  Identities=16%  Similarity=0.281  Sum_probs=155.4

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      ......|.+|...| +++.|++|+.-.++.|||+..... ..-..+....-.+..++.+||.+ +..++..||.      
T Consensus       462 l~rdnyiRSckL~p-dgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak-vcFsccsdGn------  532 (705)
T KOG0639|consen  462 LNRDNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK-VCFSCCSDGN------  532 (705)
T ss_pred             cCcccceeeeEecC-CCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc-eeeeeccCCc------
Confidence            33445689999998 788888899999999999987432 22222333345677899999988 5777778887      


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee-------------
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-------------  764 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~-------------  764 (860)
                               |.|||+.+.   ..+..+++|+..+.||..+++|.. |.||+-|++|+.||++++...             
T Consensus       533 ---------I~vwDLhnq---~~VrqfqGhtDGascIdis~dGtk-lWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg  599 (705)
T KOG0639|consen  533 ---------IAVWDLHNQ---TLVRQFQGHTDGASCIDISKDGTK-LWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLG  599 (705)
T ss_pred             ---------EEEEEcccc---eeeecccCCCCCceeEEecCCCce-eecCCCccceeehhhhhhhhhhhhhhhhhheecc
Confidence                     999999987   678899999999999999999997 999999999999999876431             


Q ss_pred             --------------------------eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578         765 --------------------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  818 (860)
Q Consensus       765 --------------------------~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~  818 (860)
                                                .+.+.-|.+-|.++.|.+.|++ +++.|.|+.+..|.+..+..+.+        
T Consensus       600 ~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkw-fvStGkDnlLnawrtPyGasiFq--------  670 (705)
T KOG0639|consen  600 YCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYGASIFQ--------  670 (705)
T ss_pred             cCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCce-eeecCchhhhhhccCccccceee--------
Confidence                                      1223336778999999999997 78889999999998877544322        


Q ss_pred             CccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       819 ~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                            . ...++|.++..|.|.++ ++|||.|..-.
T Consensus       671 ------s-kE~SsVlsCDIS~ddky-IVTGSGdkkAT  699 (705)
T KOG0639|consen  671 ------S-KESSSVLSCDISFDDKY-IVTGSGDKKAT  699 (705)
T ss_pred             ------c-cccCcceeeeeccCceE-EEecCCCcceE
Confidence                  2 23578999999999995 77998885543

>KOG1587|consensus

Probab=99.62  E-value=1.7e-14  Score=165.37  Aligned_cols=240  Identities=17%  Similarity=0.242  Sum_probs=178.0

Q ss_pred             EEEeeccchh-hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc--ccCe-eeccCCCCCeeEEEEccC
Q psy4578         603 VMYLENKTRA-QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV--SKPS-HTVDAHTAEVNCLSFNPY  678 (860)
Q Consensus       603 il~l~n~~~~-~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~--~~~~-~~~~~h~~~V~~l~~sp~  678 (860)
                      ..++|+.... .....+.....|.+++|+|.+.++++.|+.+|.|.+||++.+..  ...+ .....|..+|+.+.|..+
T Consensus       223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~  302 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN  302 (555)
T ss_pred             eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence            5677776555 45556667789999999999999999999999999999987543  1111 223568899999999653


Q ss_pred             CC-eEEEEEeCCCceeeeccccc----------------------------------------ccCCCcEEEEeCCCCCC
Q psy4578         679 SE-YILATGSADKTQFEVEEEEE----------------------------------------ENYDQKLMIWDTRSHNV  717 (860)
Q Consensus       679 g~-~llasgs~Dg~i~~~~~~~~----------------------------------------~~~dg~I~iwDl~~~~~  717 (860)
                      .. .-|++++.||.|..|+.+.-                                        +...|.|..-+......
T Consensus       303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~  382 (555)
T KOG1587|consen  303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP  382 (555)
T ss_pred             CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence            22 23788888999999965532                                        23345444322211110


Q ss_pred             -C----CCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE
Q psy4578         718 -S----KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG  792 (860)
Q Consensus       718 -~----~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs  792 (860)
                       .    +....+..|.+.|+++.++|-+..++.+++ |.+++||.......++..+..+...|++++|||....+++++.
T Consensus       383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d  461 (555)
T KOG1587|consen  383 APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD  461 (555)
T ss_pred             cccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence             1    223456678999999999999987666666 9999999988555568888888888999999999999999999


Q ss_pred             CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         793 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       793 ~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .||.+.+||+.....            .++....-+....+.+.|+++|+ +++.|...|.+++
T Consensus       462 ~~G~l~iWDLl~~~~------------~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~  512 (555)
T KOG1587|consen  462 GDGNLDIWDLLQDDE------------EPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHI  512 (555)
T ss_pred             CCCceehhhhhcccc------------CCcccccccccccceeecCCCCc-EEEEecCCCcEEE
Confidence            999999999987433            23333333456677888999999 6889999998775

>KOG4328|consensus

Probab=99.61  E-value=8.1e-15  Score=156.53  Aligned_cols=238  Identities=18%  Similarity=0.249  Sum_probs=165.0

Q ss_pred             eeeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC
Q psy4578         587 NFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH  666 (860)
Q Consensus       587 ~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h  666 (860)
                      +++++|.-.|..+++..- -.......+.....|.++|.++.|+|.+...+++.|.||+|++-|++.... ..+......
T Consensus       201 ~lva~GdK~G~VG~Wn~~-~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d  278 (498)
T KOG4328|consen  201 KLVAVGDKGGQVGLWNFG-TQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTD  278 (498)
T ss_pred             eEEEEccCCCcEEEEecC-CCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhh-HHHhhcCcc
Confidence            366667666665443321 001112334445677889999999999999999999999999999987432 333333334


Q ss_pred             CCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEE
Q psy4578         667 TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT  746 (860)
Q Consensus       667 ~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llas  746 (860)
                      ...+.++.|+.+.+. ++.|..=|.               ..+||.+++.  .....+.-|...|++++++|...+++||
T Consensus       279 ~~~fs~~d~~~e~~~-vl~~~~~G~---------------f~~iD~R~~~--s~~~~~~lh~kKI~sv~~NP~~p~~laT  340 (498)
T KOG4328|consen  279 NIWFSSLDFSAESRS-VLFGDNVGN---------------FNVIDLRTDG--SEYENLRLHKKKITSVALNPVCPWFLAT  340 (498)
T ss_pred             ceeeeeccccCCCcc-EEEeecccc---------------eEEEEeecCC--ccchhhhhhhcccceeecCCCCchheee
Confidence            566788889888876 455554445               8999999874  3355566788899999999999999999


Q ss_pred             eeCCCcEEEEeCCCCce---eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEE
Q psy4578         747 GSADKTVALWDLRNLKL---KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF  823 (860)
Q Consensus       747 gs~Dg~I~IWDl~~~~~---~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~  823 (860)
                      ||.|++.+|||+|....   ++.....|...|.+..|||.|.. |+|.+.|..|+|||..-...   .    ..+...+.
T Consensus       341 ~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa---~----~~p~~~I~  412 (498)
T KOG4328|consen  341 ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISA---K----DEPLGTIP  412 (498)
T ss_pred             cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccc---c----CCccceee
Confidence            99999999999986543   23445569999999999999987 88999999999999852111   0    01111222


Q ss_pred             EecCccC--ceEEEEEccCCCeEEEEEeCCCe
Q psy4578         824 IHGGHTA--KISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       824 ~~~~h~~--~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                      ....+..  ......|.|+.. +++.|..-.-
T Consensus       413 Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~  443 (498)
T KOG4328|consen  413 HNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRP  443 (498)
T ss_pred             ccCcccccccchhheeCCCcc-EEEEeccCcc
Confidence            1111211  234568999887 5666654443

>KOG0288|consensus

Probab=99.61  E-value=3.4e-15  Score=157.51  Aligned_cols=220  Identities=17%  Similarity=0.234  Sum_probs=158.6

Q ss_pred             hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578         613 QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ  692 (860)
Q Consensus       613 ~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i  692 (860)
                      ....+-.|.+.|..+.|-+ +...|++|+.|..|++|++..+. .....++.+..++|+++.|.+++.+ +++++.|+.+
T Consensus       167 ~~~~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~-~iAas~d~~~  243 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKH-VIAASNDKNL  243 (459)
T ss_pred             hhhhhhccccccceeEEcc-Ccchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCce-EEeecCCCce
Confidence            3444556778899999997 67889999999999999998654 3567778888899999999999997 6667788886


Q ss_pred             eeeccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEE
Q psy4578         693 FEVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA  745 (860)
Q Consensus       693 ~~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~lla  745 (860)
                      ++|+.+..                           +..|..|+.||+....+.+.+.    ....+..|+.+  .. .++
T Consensus       244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l----~~S~cnDI~~~--~~-~~~  316 (459)
T KOG0288|consen  244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL----PGSQCNDIVCS--IS-DVI  316 (459)
T ss_pred             eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc----ccccccceEec--ce-eee
Confidence            77765543                           2345566777776643322211    12344455554  22 467


Q ss_pred             EeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEe
Q psy4578         746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH  825 (860)
Q Consensus       746 sgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~  825 (860)
                      +|..|+.|++||.++... ......+ +.|+++..+++|.. +.+++.|.++.+.|+++.........        ....
T Consensus       317 SgH~DkkvRfwD~Rs~~~-~~sv~~g-g~vtSl~ls~~g~~-lLsssRDdtl~viDlRt~eI~~~~sA--------~g~k  385 (459)
T KOG0288|consen  317 SGHFDKKVRFWDIRSADK-TRSVPLG-GRVTSLDLSMDGLE-LLSSSRDDTLKVIDLRTKEIRQTFSA--------EGFK  385 (459)
T ss_pred             ecccccceEEEeccCCce-eeEeecC-cceeeEeeccCCeE-EeeecCCCceeeeecccccEEEEeec--------cccc
Confidence            888888888888888775 5555554 49999999999987 66779999999999998554322210        0011


Q ss_pred             cCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         826 GGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       826 ~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                        ....++.++|||++.| +++||.||.|.|
T Consensus       386 --~asDwtrvvfSpd~~Y-vaAGS~dgsv~i  413 (459)
T KOG0288|consen  386 --CASDWTRVVFSPDGSY-VAAGSADGSVYI  413 (459)
T ss_pred             --cccccceeEECCCCce-eeeccCCCcEEE
Confidence              1234889999999996 778999998876

>KOG0303|consensus

Probab=99.61  E-value=1.4e-14  Score=152.10  Aligned_cols=167  Identities=18%  Similarity=0.419  Sum_probs=134.2

Q ss_pred             eeeeEeec----cCCcEEEE---EeCCCcEEEEEcC-CCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         624 LIDVAWHL----LHESLFGS---VADDQKLMIWDTR-SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       624 V~~v~~sp----~~~~~las---gs~DG~I~IWd~~-~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      |+.+.|..    -+..++|.   ++..|...+.-+. +|+.....-.+.+|.++|..+.|+|.+.+.+|+||.|.+    
T Consensus        30 Vs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~----  105 (472)
T KOG0303|consen   30 VSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTK----  105 (472)
T ss_pred             eeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCce----
Confidence            45555543    34555544   3344555555543 344445566778999999999999999999999999999    


Q ss_pred             cccccccCCCcEEEEeCCCCC----CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccC
Q psy4578         696 EEEEEENYDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH  771 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~----~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h  771 (860)
                                 |.||++..+.    ...++..+.+|...|..++|||...++|++++.|++|.+|++.++.. +..+. |
T Consensus       106 -----------v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea-li~l~-h  172 (472)
T KOG0303|consen  106 -----------VMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA-LITLD-H  172 (472)
T ss_pred             -----------EEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce-eeecC-C
Confidence                       9999986543    33567889999999999999999988999999999999999999997 55555 9


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      ...|+++.|+-+|.. ++|.+.|..|+|||.+++...
T Consensus       173 pd~i~S~sfn~dGs~-l~TtckDKkvRv~dpr~~~~v  208 (472)
T KOG0303|consen  173 PDMVYSMSFNRDGSL-LCTTCKDKKVRVIDPRRGTVV  208 (472)
T ss_pred             CCeEEEEEeccCCce-eeeecccceeEEEcCCCCcEe
Confidence            999999999999985 899999999999999985543

>KOG1034|consensus

Probab=99.60  E-value=1.1e-14  Score=149.71  Aligned_cols=224  Identities=16%  Similarity=0.314  Sum_probs=158.3

Q ss_pred             EEEeeccch-hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTR-AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~-~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      ++++-+... .......+|.+.|+.+.++|...+++++||.|.+|++|++++........-+.+|.+.|.++.|+++|.+
T Consensus       116 vIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~  195 (385)
T KOG1034|consen  116 VIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDR  195 (385)
T ss_pred             EEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCe
Confidence            444444444 4455667888999999999988899999999999999999986544444455789999999999999996


Q ss_pred             EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCC------------------------CCe-eeecCCCCCeEEEEE
Q psy4578         682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVS------------------------KPS-HTVDAHTAEVNCLSF  736 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~------------------------~~~-~~~~~h~~~I~sl~~  736 (860)
                       +++++.|.+               +++|++...+..                        -+. .+-.-|..+|.|+.|
T Consensus       196 -i~ScGmDhs---------------lk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw  259 (385)
T KOG1034|consen  196 -IASCGMDHS---------------LKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW  259 (385)
T ss_pred             -eeccCCcce---------------EEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence             899999999               777777632100                        011 133457888888888


Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCce-------------eeEEeccCCCceEEE--EEcCCCCCEEEEEECCCcEEEEE
Q psy4578         737 NPYSEYILATGSADKTVALWDLRNLKL-------------KLHSFESHKDEIFQV--QWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       737 sp~g~~llasgs~Dg~I~IWDl~~~~~-------------~~~~~~~h~~~V~~l--~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      -  |.+ +++-|.++.|..|-......             .+..+.-....++-+  +|+|.++ +|+.|...|.+.+||
T Consensus       260 ~--gd~-ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwd  335 (385)
T KOG1034|consen  260 F--GDF-ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWD  335 (385)
T ss_pred             H--hhh-eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEE
Confidence            6  564 77888899999997621111             123333344555555  4567777 489999999999999


Q ss_pred             CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++..+..          .............|...+|+.||..|++.+.+.-+.|+
T Consensus       336 L~~~ep~----------~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw  380 (385)
T KOG1034|consen  336 LDNNEPP----------KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW  380 (385)
T ss_pred             CCCCCCc----------cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence            9985542          11222333445789999999999966655554444454

>KOG0650|consensus

Probab=99.60  E-value=1.1e-14  Score=159.63  Aligned_cols=227  Identities=17%  Similarity=0.277  Sum_probs=157.8

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      ..+|.+.|.+++..| .+.+|++|+.||+|+||.+.++   .++.++. ..+.|.||+|+|.+..-++.....+.+++.+
T Consensus       396 yrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~Tg---Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATG---RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             EeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecc---eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            457888999999998 8999999999999999999995   4455543 3568999999997664333333333332221


Q ss_pred             cccc------------------c-------------------------------------------------cCCCcEEE
Q psy4578         697 EEEE------------------E-------------------------------------------------NYDQKLMI  709 (860)
Q Consensus       697 ~~~~------------------~-------------------------------------------------~~dg~I~i  709 (860)
                      -..+                  .                                                 +....|.|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence            1100                  0                                                 01112333


Q ss_pred             EeCCCCCCC--------------------------------------CCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC
Q psy4578         710 WDTRSHNVS--------------------------------------KPSHTVDAHTAEVNCLSFNPYSEYILATGSADK  751 (860)
Q Consensus       710 wDl~~~~~~--------------------------------------~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg  751 (860)
                      .++......                                      ..+..+......|.+++.||.|.+ ++.|+.|+
T Consensus       551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn-li~gs~d~  629 (733)
T KOG0650|consen  551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN-LILGSYDK  629 (733)
T ss_pred             EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe-EEEecCCC
Confidence            333221100                                      111122233456789999999998 78999999


Q ss_pred             cEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCc
Q psy4578         752 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK  831 (860)
Q Consensus       752 ~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~  831 (860)
                      .+..||+.-...+...+..|...+++++|++.-+ ++++|+.||++.|+.-.-.....+     +....++..+.+|...
T Consensus       630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~q-----npliVPlK~L~gH~~~  703 (733)
T KOG0650|consen  630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQ-----NPLIVPLKRLRGHEKT  703 (733)
T ss_pred             eeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhc-----CCceEeeeeccCceee
Confidence            9999999987766788889999999999999887 699999999999986543222111     1223456677788765


Q ss_pred             ----eEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         832 ----ISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       832 ----I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                          |.+..|||...||+ +++.||+|++
T Consensus       704 ~~~gVLd~~wHP~qpWLf-sAGAd~tirl  731 (733)
T KOG0650|consen  704 NDLGVLDTIWHPRQPWLF-SAGADGTIRL  731 (733)
T ss_pred             cccceEeecccCCCceEE-ecCCCceEEe
Confidence                99999999999854 8888999886

>KOG1273|consensus

Probab=99.59  E-value=6.5e-14  Score=143.22  Aligned_cols=203  Identities=11%  Similarity=0.178  Sum_probs=151.4

Q ss_pred             hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578         613 QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ  692 (860)
Q Consensus       613 ~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i  692 (860)
                      ++...+.+.. -.|+.|++ .|.++|+|+.||.|.|||+.+.   .....+.+|..+|+|++||++|+. |++++.|.. 
T Consensus        16 el~~tld~~~-a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr~-LltsS~D~s-   88 (405)
T KOG1273|consen   16 ELTHTLDNPL-AECCQFSR-WGDYLAVGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGRK-LLTSSRDWS-   88 (405)
T ss_pred             hhceeccCCc-cceEEecc-CcceeeeeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCCE-eeeecCCce-
Confidence            3444455544 78999998 8999999999999999999984   456778899999999999999995 899999998 


Q ss_pred             eeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc--
Q psy4578         693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--  770 (860)
Q Consensus       693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~--  770 (860)
                                    |.+||+..+.   ++..+. ..++|..+.|+|...+.++++-.+..-.+-++..+...+.....  
T Consensus        89 --------------i~lwDl~~gs---~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~  150 (405)
T KOG1273|consen   89 --------------IKLWDLLKGS---PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDG  150 (405)
T ss_pred             --------------eEEEeccCCC---ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcc
Confidence                          9999999884   444443 57899999999977665656555655566666543321111110  


Q ss_pred             -CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCcc-CceEEEEEccCCCeEEEEE
Q psy4578         771 -HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       771 -h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~-~~I~~i~~spdg~~Llasg  848 (860)
                       ......+..|.+.|++ +++|...|.+.++|..+.++.              ..+.... ..|.++.++..|++ ++..
T Consensus       151 dln~sas~~~fdr~g~y-IitGtsKGkllv~~a~t~e~v--------------as~rits~~~IK~I~~s~~g~~-liiN  214 (405)
T KOG1273|consen  151 DLNSSASHGVFDRRGKY-IITGTSKGKLLVYDAETLECV--------------ASFRITSVQAIKQIIVSRKGRF-LIIN  214 (405)
T ss_pred             ccccccccccccCCCCE-EEEecCcceEEEEecchheee--------------eeeeechheeeeEEEEeccCcE-EEEe
Confidence             1112233468899986 789999999999999985543              3333333 67899999999995 6688


Q ss_pred             eCCCeEee
Q psy4578         849 SEDNIMQK  856 (860)
Q Consensus       849 s~Dg~IrI  856 (860)
                      +.|.+||.
T Consensus       215 tsDRvIR~  222 (405)
T KOG1273|consen  215 TSDRVIRT  222 (405)
T ss_pred             cCCceEEE
Confidence            89999885

>KOG1274|consensus

Probab=99.59  E-value=1.3e-13  Score=158.37  Aligned_cols=195  Identities=20%  Similarity=0.311  Sum_probs=151.7

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      +...|.+++..   .+.|++|+.+++|.+|...+++....+..   ..-++++++++-+|.+ ++.||.|-.        
T Consensus        55 ~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~~iL~R---ftlp~r~~~v~g~g~~-iaagsdD~~--------  119 (933)
T KOG1274|consen   55 SGELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEEDTILAR---FTLPIRDLAVSGSGKM-IAAGSDDTA--------  119 (933)
T ss_pred             cCceeEEEeec---ccceEEeeccceEEEeeCCCCCccceeee---eeccceEEEEecCCcE-EEeecCcee--------
Confidence            66678887775   45899999999999999988655444443   4678999999999985 888888888        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc--------C
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--------H  771 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~--------h  771 (860)
                             |++.+....   .....+.+|.++|.++.|+|++. +||+.+.||.|++||+.++.. ...+.+        .
T Consensus       120 -------vK~~~~~D~---s~~~~lrgh~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~  187 (933)
T KOG1274|consen  120 -------VKLLNLDDS---SQEKVLRGHDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFIL  187 (933)
T ss_pred             -------EEEEecccc---chheeecccCCceeeeeEcCCCC-EEEEEecCceEEEEEcccchh-hhhcccCCccccccc
Confidence                   999998876   56678899999999999999999 599999999999999998775 333332        1


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D  851 (860)
                      ...+..++|+|+|.. ++..+.|+.|++|+..........            ..+.+...+..++|+|+|.||+ +++.|
T Consensus       188 s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~~f~L------------r~~~~ss~~~~~~wsPnG~YiA-As~~~  253 (933)
T KOG1274|consen  188 SRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWELQFKL------------RDKLSSSKFSDLQWSPNGKYIA-ASTLD  253 (933)
T ss_pred             cceeeeeeecCCCCe-EEeeccCCeEEEEccCCceeheee------------cccccccceEEEEEcCCCcEEe-eeccC
Confidence            346778999999876 667778999999998875543222            2233445599999999999855 55555


Q ss_pred             CeEe
Q psy4578         852 NIMQ  855 (860)
Q Consensus       852 g~Ir  855 (860)
                      |.|-
T Consensus       254 g~I~  257 (933)
T KOG1274|consen  254 GQIL  257 (933)
T ss_pred             CcEE
Confidence            5544

>KOG4378|consensus

Probab=99.59  E-value=5.4e-14  Score=150.93  Aligned_cols=212  Identities=17%  Similarity=0.326  Sum_probs=170.0

Q ss_pred             eeecccceeEEEEeeccchhhhhhh-hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC-CCCe
Q psy4578         593 YFKGTHHIEEVMYLENKTRAQICQL-LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH-TAEV  670 (860)
Q Consensus       593 ~~~Gs~~l~~il~l~n~~~~~l~~l-~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h-~~~V  670 (860)
                      .+...++...++.+|+.....+.+. .+|.+.|++|.++. .+.++|+++..|.|.|..+.++..   ...+... ...|
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~---tt~f~~~sgqsv  167 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQK---TTTFTIDSGQSV  167 (673)
T ss_pred             eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCcc---ccceecCCCCeE
Confidence            3444456677888888876655554 46678899999995 788999999999999999988533   2333322 3456


Q ss_pred             eEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC
Q psy4578         671 NCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD  750 (860)
Q Consensus       671 ~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D  750 (860)
                      .-+.|+|..+++|.+++++|.               |.+||+....  ....-...|..+...++|+|.+..+|++-+.|
T Consensus       168 Rll~ys~skr~lL~~asd~G~---------------VtlwDv~g~s--p~~~~~~~HsAP~~gicfspsne~l~vsVG~D  230 (673)
T KOG4378|consen  168 RLLRYSPSKRFLLSIASDKGA---------------VTLWDVQGMS--PIFHASEAHSAPCRGICFSPSNEALLVSVGYD  230 (673)
T ss_pred             EEeecccccceeeEeeccCCe---------------EEEEeccCCC--cccchhhhccCCcCcceecCCccceEEEeccc
Confidence            799999999999999999999               9999998652  33444567999999999999999899999999


Q ss_pred             CcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccC
Q psy4578         751 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA  830 (860)
Q Consensus       751 g~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~  830 (860)
                      ..|.+||.+.... ...+. -..+...++|+++|.+ |+.|...|.|..||++..             ..++.....|..
T Consensus       231 kki~~yD~~s~~s-~~~l~-y~~Plstvaf~~~G~~-L~aG~s~G~~i~YD~R~~-------------k~Pv~v~sah~~  294 (673)
T KOG4378|consen  231 KKINIYDIRSQAS-TDRLT-YSHPLSTVAFSECGTY-LCAGNSKGELIAYDMRST-------------KAPVAVRSAHDA  294 (673)
T ss_pred             ceEEEeecccccc-cceee-ecCCcceeeecCCceE-EEeecCCceEEEEecccC-------------CCCceEeeeccc
Confidence            9999999997664 33333 4567899999999975 899999999999999973             346777778999


Q ss_pred             ceEEEEEccCC
Q psy4578         831 KISDFSWNPNE  841 (860)
Q Consensus       831 ~I~~i~~spdg  841 (860)
                      .|++++|-|.-
T Consensus       295 sVt~vafq~s~  305 (673)
T KOG4378|consen  295 SVTRVAFQPSP  305 (673)
T ss_pred             ceeEEEeeecc
Confidence            99999997764

>KOG1408|consensus

Probab=99.58  E-value=2.2e-14  Score=159.35  Aligned_cols=218  Identities=18%  Similarity=0.240  Sum_probs=162.9

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCCce
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTQ  692 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg~i  692 (860)
                      ..+++..-.+.+++.+| ++.+||+|..-|.++||++..   ......+..|...|.|+.|+..  +..+|++++.|..|
T Consensus       453 ~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~---l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlI  528 (1080)
T KOG1408|consen  453 VSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQE---LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLI  528 (1080)
T ss_pred             hhhcCcccceEEEEECC-CcceecccCccCceEEEEehh---hhhhhheecccceeEEEeecCchhhhHhhhhccCCceE
Confidence            34555666799999999 899999999999999999987   4556778899999999999842  55689999999996


Q ss_pred             eeecccccc-------------------cCCCcEEEE----------eCCCCCCCCCeeeecCC-----CCCeEEEEEcC
Q psy4578         693 FEVEEEEEE-------------------NYDQKLMIW----------DTRSHNVSKPSHTVDAH-----TAEVNCLSFNP  738 (860)
Q Consensus       693 ~~~~~~~~~-------------------~~dg~I~iw----------Dl~~~~~~~~~~~~~~h-----~~~I~sl~~sp  738 (860)
                      .+++....-                   ..+++.+..          +.....  .....+..|     ...++.++..|
T Consensus       529 HV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~--~~g~~f~r~t~t~~ktTlYDm~Vdp  606 (1080)
T KOG1408|consen  529 HVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA--SSGRLFPRHTQTLSKTTLYDMAVDP  606 (1080)
T ss_pred             EEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccc--cCceeccccccccccceEEEeeeCC
Confidence            666554330                   112222221          111100  001111111     23567888888


Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCceeeEEecc---CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccccc
Q psy4578         739 YSEYILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE  815 (860)
Q Consensus       739 ~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~---h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~  815 (860)
                      +.++ +++++.|..|+|||+.+++. .+.|++   |.+....+...|.|-| ++|.+.|.++.++|+-+++         
T Consensus       607 ~~k~-v~t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sgE---------  674 (1080)
T KOG1408|consen  607 TSKL-VVTVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSGE---------  674 (1080)
T ss_pred             Ccce-EEEEecccceEEEeccccce-eeeecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccch---------
Confidence            8885 88999999999999999987 777764   6677888999999986 8899999999999999854         


Q ss_pred             CCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         816 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       816 ~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                           ++....||...|+++.|.+|.+.|+ +.+.||.|-|
T Consensus       675 -----cvA~m~GHsE~VTG~kF~nDCkHlI-SvsgDgCIFv  709 (1080)
T KOG1408|consen  675 -----CVAQMTGHSEAVTGVKFLNDCKHLI-SVSGDGCIFV  709 (1080)
T ss_pred             -----hhhhhcCcchheeeeeecccchhhe-eecCCceEEE
Confidence                 4566679999999999999999755 6666766643

>KOG1188|consensus

Probab=99.58  E-value=5.6e-14  Score=145.44  Aligned_cols=249  Identities=21%  Similarity=0.302  Sum_probs=171.0

Q ss_pred             eeeecceeecccceeEEEEeeccchh-hhhhhhhcccceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCcccCeeecc
Q psy4578         587 NFFKQGYFKGTHHIEEVMYLENKTRA-QICQLLDKLRLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNVSKPSHTVD  664 (860)
Q Consensus       587 ~ll~~G~~~Gs~~l~~il~l~n~~~~-~l~~l~~~~~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~  664 (860)
                      ..+++++-.|+.+      +.+..++ .+..+.++...++.+.|... ..+.+.+|+.||+|++||+++.... ......
T Consensus        41 ~~vav~lSngsv~------lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-a~~~~~  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVR------LYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-ARISWT  113 (376)
T ss_pred             eeEEEEecCCeEE------EEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-hheecc
Confidence            4566666555533      2233334 44555567788999999864 5778999999999999999975432 233344


Q ss_pred             CCC-CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcE
Q psy4578         665 AHT-AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  743 (860)
Q Consensus       665 ~h~-~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~l  743 (860)
                      +++ .+..|++.+..++ ++++|+.--           ..+..+.+||++..+. ..-.-...|...|++++|+|+...+
T Consensus       114 ~~~~~~f~~ld~nck~~-ii~~GtE~~-----------~s~A~v~lwDvR~~qq-~l~~~~eSH~DDVT~lrFHP~~pnl  180 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKN-IIACGTELT-----------RSDASVVLWDVRSEQQ-LLRQLNESHNDDVTQLRFHPSDPNL  180 (376)
T ss_pred             CCCCCcceEeeccCcCC-eEEeccccc-----------cCceEEEEEEeccccc-hhhhhhhhccCcceeEEecCCCCCe
Confidence            454 5677777765565 677775322           2345599999998642 1223356799999999999999999


Q ss_pred             EEEeeCCCcEEEEeCCCCce--eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccccc------
Q psy4578         744 LATGSADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE------  815 (860)
Q Consensus       744 lasgs~Dg~I~IWDl~~~~~--~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~------  815 (860)
                      |+|||.||-|.+||+.....  .+...-.|...|.++.|..++-.-+.+-+..++..+|++..+..........      
T Consensus       181 LlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~  260 (376)
T KOG1188|consen  181 LLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL  260 (376)
T ss_pred             EEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH
Confidence            99999999999999976532  1222334778899999998883337788899999999998866433222110      


Q ss_pred             --------------C---------C------------------CCccEEEe-cCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         816 --------------D---------G------------------PPELLFIH-GGHTAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       816 --------------~---------~------------------~~~~i~~~-~~h~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                                    .         +                  .......+ .+|..-|.++.|...+. ++.|||+||.
T Consensus       261 r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~-~l~TGGEDG~  339 (376)
T KOG1188|consen  261 RKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND-VLYTGGEDGL  339 (376)
T ss_pred             HhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc-eeeccCCCce
Confidence                          0         0                  00011111 24667788889987777 6889999999


Q ss_pred             Eee
Q psy4578         854 MQK  856 (860)
Q Consensus       854 IrI  856 (860)
                      +.+
T Consensus       340 l~~  342 (376)
T KOG1188|consen  340 LQA  342 (376)
T ss_pred             EEE
Confidence            875

>KOG1009|consensus

Probab=99.57  E-value=1.3e-14  Score=153.05  Aligned_cols=176  Identities=23%  Similarity=0.413  Sum_probs=140.3

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCccc------CeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSK------PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~------~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      .+.+|.++.|.+++.+.++||+.|..|++|.++.+....      ....+..|...|+++.|+|+|. ++++|+++|.++
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~   90 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVF   90 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEE
Confidence            457899999998666699999999999999987543322      3456788999999999999999 799999999955


Q ss_pred             eecccccccCCCcEEEEeCCC-----CCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe
Q psy4578         694 EVEEEEEENYDQKLMIWDTRS-----HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF  768 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~-----~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~  768 (860)
                      +|....       +.+.+-++     .+.+.......+|...|..++|+|++.+ +++|+.|+++++||+..+.. ...+
T Consensus        91 lWk~~~-------~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~-l~s~s~dns~~l~Dv~~G~l-~~~~  161 (434)
T KOG1009|consen   91 LWKQGD-------VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF-LVSGSVDNSVRLWDVHAGQL-LAIL  161 (434)
T ss_pred             EEEecC-------cCCccccchhhhCccceEEEEEecccccchhhhhccCCCce-eeeeeccceEEEEEecccee-Eeec
Confidence            554332       11112223     2223344567789999999999999996 89999999999999999997 8888


Q ss_pred             ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         769 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       769 ~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      ..|...|..++|.|.+.+ +++-+.|...+.+++....
T Consensus       162 ~dh~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~~~  198 (434)
T KOG1009|consen  162 DDHEHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKLKQ  198 (434)
T ss_pred             cccccccceeecchhhhh-hhhhccCcccceeeeeeee
Confidence            899999999999999987 7888889877777766533

>KOG2048|consensus

Probab=99.57  E-value=7.8e-14  Score=155.43  Aligned_cols=238  Identities=20%  Similarity=0.291  Sum_probs=171.5

Q ss_pred             CCCCCcccccceeeeeeecceeecccceeEEEEeeccchhhhhhhh--h-cccceeeeEeeccCCcEEEEEeCCCcEEEE
Q psy4578         573 LPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLL--D-KLRLLIDVAWHLLHESLFGSVADDQKLMIW  649 (860)
Q Consensus       573 l~a~~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~--~-~~~~V~~v~~sp~~~~~lasgs~DG~I~IW  649 (860)
                      .|.+..+=.+.-.-+.+|.+--+|.      +.+||....-.....  + ..+.|-+++|++  +..|++.+.+|.|.-|
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~------IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~Ew   95 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGN------IEIWNLSNNWFLEPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEW   95 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCc------EEEEccCCCceeeEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEE
Confidence            3333333333333344555544444      444554443333322  2 236799999994  5667888889999999


Q ss_pred             EcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCC
Q psy4578         650 DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA  729 (860)
Q Consensus       650 d~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~  729 (860)
                      |+.+.   ++........+.|++++.+|.+. .++.|+.||.               +..+++..+.. .....+...++
T Consensus        96 Dl~~l---k~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGv---------------l~~~s~~p~~I-~~~r~l~rq~s  155 (691)
T KOG2048|consen   96 DLHTL---KQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGV---------------LYDFSIGPDKI-TYKRSLMRQKS  155 (691)
T ss_pred             ecccC---ceeEEecCCCcceeEEEeCCccc-eEEeecCCce---------------EEEEecCCceE-EEEeecccccc
Confidence            99984   55666777889999999999887 5899999997               77777765422 33344556679


Q ss_pred             CeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE----e---c-cCCCceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         730 EVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS----F---E-SHKDEIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       730 ~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~----~---~-~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      .|.+++|+|++.. +++|+.||.|++||...+.. ++.    +   . +...-|+++.|-.++.  +++|..-|+|.+||
T Consensus       156 RvLslsw~~~~~~-i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t--I~sgDS~G~V~FWd  231 (691)
T KOG2048|consen  156 RVLSLSWNPTGTK-IAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDST--IASGDSAGTVTFWD  231 (691)
T ss_pred             eEEEEEecCCccE-EEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecCc--EEEecCCceEEEEc
Confidence            9999999999986 99999999999999998875 331    1   1 1234578888887774  88999999999999


Q ss_pred             CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ...+.              ++..+..|.+.|.+++.++++.+++++|-+..++++
T Consensus       232 ~~~gT--------------LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~  272 (691)
T KOG2048|consen  232 SIFGT--------------LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQY  272 (691)
T ss_pred             ccCcc--------------hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence            98844              445566789999999999999987766666555554

>KOG1408|consensus

Probab=99.57  E-value=8.1e-14  Score=154.94  Aligned_cols=229  Identities=17%  Similarity=0.306  Sum_probs=164.0

Q ss_pred             eeEEEEeeccch----hhhhhhhhcccceeeeEeecc----------CCcEEEEEeCCCcEEEEEcCCCCcccCe-----
Q psy4578         600 IEEVMYLENKTR----AQICQLLDKLRLLIDVAWHLL----------HESLFGSVADDQKLMIWDTRSHNVSKPS-----  660 (860)
Q Consensus       600 l~~il~l~n~~~----~~l~~l~~~~~~V~~v~~sp~----------~~~~lasgs~DG~I~IWd~~~~~~~~~~-----  660 (860)
                      .+..+|+|+...    ++....+.|...|+++.--|.          -...|++|+.||+||+||+..+......     
T Consensus       344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil  423 (1080)
T KOG1408|consen  344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL  423 (1080)
T ss_pred             cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence            344577777543    345556778788888876652          1346999999999999999753221110     


Q ss_pred             -----------------------------eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEe
Q psy4578         661 -----------------------------HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWD  711 (860)
Q Consensus       661 -----------------------------~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwD  711 (860)
                                                   ....+....+.+++.+|+|++ |++|..-|.               ++|||
T Consensus       424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh-LAsGDr~Gn---------------lrVy~  487 (1080)
T KOG1408|consen  424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH-LASGDRGGN---------------LRVYD  487 (1080)
T ss_pred             hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce-ecccCccCc---------------eEEEE
Confidence                                         001122357899999999997 899998888               99999


Q ss_pred             CCCCCCCCCeeeecCCCCCeEEEEEcC--CCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEc--------
Q psy4578         712 TRSHNVSKPSHTVDAHTAEVNCLSFNP--YSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS--------  781 (860)
Q Consensus       712 l~~~~~~~~~~~~~~h~~~I~sl~~sp--~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fs--------  781 (860)
                      +...   .....+.+|...|.|+.|+-  -+..+||+|+.|..|+|||+...-..+.++.+|...|+++.|.        
T Consensus       488 Lq~l---~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M  564 (1080)
T KOG1408|consen  488 LQEL---EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM  564 (1080)
T ss_pred             ehhh---hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence            9876   66778889999999999975  2345799999999999999876554455566666666665554        


Q ss_pred             -----------------------------------------CCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCc
Q psy4578         782 -----------------------------------------PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE  820 (860)
Q Consensus       782 -----------------------------------------p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~  820 (860)
                                                               |..+ ++++++.|..|+|||+.+++....+.        
T Consensus       565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sgKq~k~FK--------  635 (1080)
T KOG1408|consen  565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESGKQVKSFK--------  635 (1080)
T ss_pred             EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccccceeeeec--------
Confidence                                                     4344 37788888888888888866654433        


Q ss_pred             cEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeeccC
Q psy4578         821 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPFK  859 (860)
Q Consensus       821 ~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~f~  859 (860)
                         ...+|.+....+...|.|.|++.++++.....++|.
T Consensus       636 ---gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~  671 (1080)
T KOG1408|consen  636 ---GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV  671 (1080)
T ss_pred             ---ccccCCCceEEEEECCCccEEEEeecCCceEEEEec
Confidence               223677888899999999986666665555555764

>KOG0321|consensus

Probab=99.57  E-value=3.7e-14  Score=156.72  Aligned_cols=206  Identities=23%  Similarity=0.380  Sum_probs=148.5

Q ss_pred             eeEeec--cCCcEEEEEeCCCcEEEEEcCCCCcc---cCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         626 DVAWHL--LHESLFGSVADDQKLMIWDTRSHNVS---KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       626 ~v~~sp--~~~~~lasgs~DG~I~IWd~~~~~~~---~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      ++.|++  ...++|+.+..||.|.++|.......   ..+.....|.+.|.++.|.| |...|++++.|.+         
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT---------  123 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDST---------  123 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCce---------
Confidence            355643  45678999999999999998753211   22345567999999999999 7778999999998         


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-----------------
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-----------------  763 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-----------------  763 (860)
                            +++||+.+..... ...+.+|++.|.+++|+|.+..+|++|+.||.|.|||++-...                 
T Consensus       124 ------~r~Wdvk~s~l~G-~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~  196 (720)
T KOG0321|consen  124 ------IRPWDVKTSRLVG-GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA  196 (720)
T ss_pred             ------eeeeeeccceeec-ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC
Confidence                  9999999874422 2257899999999999999999999999999999999874321                 


Q ss_pred             ---------eeEEeccCCCceEE---EEEcCCCCCEEEEEEC-CCcEEEEECCCCCcccccccccCCCCccEEEecCc--
Q psy4578         764 ---------KLHSFESHKDEIFQ---VQWSPHNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--  828 (860)
Q Consensus       764 ---------~~~~~~~h~~~V~~---l~fsp~g~~lL~tgs~-Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h--  828 (860)
                               .......+...+.+   +.+..|... |+++|. |+.|+|||++.......-+      +.....+..|  
T Consensus       197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t-laSaga~D~~iKVWDLRk~~~~~r~e------p~~~~~~~t~sk  269 (720)
T KOG0321|consen  197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST-LASAGAADSTIKVWDLRKNYTAYRQE------PRGSDKYPTHSK  269 (720)
T ss_pred             CCCCchhhccccccccccCceeeeeEEEEEeccce-eeeccCCCcceEEEeecccccccccC------CCcccCccCccc
Confidence                     01222334444544   445556654 788886 9999999999865543221      1111111122  


Q ss_pred             -cCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         829 -TAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       829 -~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                       .-.++++..+..|.+|+|+|.++.+.-
T Consensus       270 rs~G~~nL~lDssGt~L~AsCtD~sIy~  297 (720)
T KOG0321|consen  270 RSVGQVNLILDSSGTYLFASCTDNSIYF  297 (720)
T ss_pred             ceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence             346788999999999999999655543

>KOG1063|consensus

Probab=99.56  E-value=6.9e-14  Score=155.90  Aligned_cols=222  Identities=18%  Similarity=0.291  Sum_probs=167.3

Q ss_pred             hhhhhhhhcccceeeeEeeccCCcEEEEEeCCC-----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEE
Q psy4578         612 AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQ-----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG  686 (860)
Q Consensus       612 ~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG-----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasg  686 (860)
                      .++..+++|.-.|++++.+| +++++|+++...     .|++|+..+   ......+.+|.-.|+.++|||||++ |++.
T Consensus       516 PEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~---W~~~~~L~~HsLTVT~l~FSpdg~~-LLsv  590 (764)
T KOG1063|consen  516 PEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN---WLQVQELEGHSLTVTRLAFSPDGRY-LLSV  590 (764)
T ss_pred             hhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc---hhhhheecccceEEEEEEECCCCcE-EEEe
Confidence            56778899999999999998 899999998643     599999987   4556678899999999999999997 7888


Q ss_pred             eCCCceeeecccccccCCCcEEEEeCCCCCCC-CCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCC--ce
Q psy4578         687 SADKTQFEVEEEEEENYDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL--KL  763 (860)
Q Consensus       687 s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~-~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~--~~  763 (860)
                      +.|.+               +.+|........ ......+.|+.-|.++.|+|++.+ ++|+|+|.+|++|.....  ..
T Consensus       591 sRDRt---------------~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkVW~~~~~~d~~  654 (764)
T KOG1063|consen  591 SRDRT---------------VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKVWEEPDLRDKY  654 (764)
T ss_pred             ecCce---------------EEeeeeecccchhhhhccccccceEEEEcccCcccce-eEEecCCceEEEEeccCchhhh
Confidence            89999               889987543211 123346789999999999999997 999999999999998776  32


Q ss_pred             eeE-EeccCCCceEEEEEcCCC----CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc
Q psy4578         764 KLH-SFESHKDEIFQVQWSPHN----ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN  838 (860)
Q Consensus       764 ~~~-~~~~h~~~V~~l~fsp~g----~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s  838 (860)
                      ... ....+..+|++++|.|--    ..+++.|-..|.|.+|..............  ..........+|.+.|+.+.|.
T Consensus       655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~aV~rl~w~  732 (764)
T KOG1063|consen  655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTF--NLDTRLCATIGPDSAVNRLLWR  732 (764)
T ss_pred             hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceee--eeccccccccChHHhhheeEec
Confidence            111 334578899999998732    236788889999999997643321111100  0111223344678899999999


Q ss_pred             cC---------CCeEEEEEeCCCeEee
Q psy4578         839 PN---------EPWVICSVSEDNIMQK  856 (860)
Q Consensus       839 pd---------g~~Llasgs~Dg~IrI  856 (860)
                      |.         +.+-+++|++|..+||
T Consensus       733 p~~~~~~~~~~~~l~la~~g~D~~vri  759 (764)
T KOG1063|consen  733 PTCSDDWVEDKEWLNLAVGGDDESVRI  759 (764)
T ss_pred             cccccccccccceeEEeeecccceeEE
Confidence            75         2334789999999997

>KOG1445|consensus

Probab=99.55  E-value=4.6e-14  Score=154.91  Aligned_cols=173  Identities=18%  Similarity=0.366  Sum_probs=140.3

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc----ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV----SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK  690 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~----~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg  690 (860)
                      .-.+.....|+++.|+|.+...||+++.||.|++|.+..+..    ..+...+..|...|+++.|+|-...++++++.|.
T Consensus       621 ~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~  700 (1012)
T KOG1445|consen  621 MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDS  700 (1012)
T ss_pred             ccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccc
Confidence            334455678999999999999999999999999999976432    2344567789999999999998888899999999


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES  770 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~  770 (860)
                      +               |++||+.+.   .....+.+|++.|.+++|+|+|+. +|+-+.||+|++|..+....+++.-.+
T Consensus       701 T---------------i~lWDl~~~---~~~~~l~gHtdqIf~~AWSpdGr~-~AtVcKDg~~rVy~Prs~e~pv~Eg~g  761 (1012)
T KOG1445|consen  701 T---------------IELWDLANA---KLYSRLVGHTDQIFGIAWSPDGRR-IATVCKDGTLRVYEPRSREQPVYEGKG  761 (1012)
T ss_pred             e---------------eeeeehhhh---hhhheeccCcCceeEEEECCCCcc-eeeeecCceEEEeCCCCCCCccccCCC
Confidence            9               999999987   566788999999999999999995 999999999999999988876655443


Q ss_pred             CC-CceEEEEEcCCCCCEEEEEE---CCCcEEEEECCCCC
Q psy4578         771 HK-DEIFQVQWSPHNETILASSG---TDRRLHVWDLSKIG  806 (860)
Q Consensus       771 h~-~~V~~l~fsp~g~~lL~tgs---~Dg~I~iWdl~~~~  806 (860)
                      -. ..--.+.|.-+|++++++|-   ....|.+||..+..
T Consensus       762 pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  762 PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             CccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence            22 23345788889997655553   34678888877643

>KOG1539|consensus

Probab=99.54  E-value=3.4e-13  Score=153.24  Aligned_cols=232  Identities=21%  Similarity=0.337  Sum_probs=186.9

Q ss_pred             cceeecccceeEEEEeeccchh-hh----hhhhhc-ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc
Q psy4578         591 QGYFKGTHHIEEVMYLENKTRA-QI----CQLLDK-LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD  664 (860)
Q Consensus       591 ~G~~~Gs~~l~~il~l~n~~~~-~l----~~l~~~-~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~  664 (860)
                      -|...-..+...++++|+.... ..    ..+... ++.|+++.--+..-+.++.|+.+|.+.+|++++   .+.+.++.
T Consensus       123 fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt---~K~v~~f~  199 (910)
T KOG1539|consen  123 FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRT---GKVVYTFQ  199 (910)
T ss_pred             ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEecc---CcEEEEec
Confidence            4555555666777888876652 11    122222 233888776555566789999999999999999   46788999


Q ss_pred             CCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEE
Q psy4578         665 AHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  744 (860)
Q Consensus       665 ~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~ll  744 (860)
                      ++...|+++.=+|-=+ +++.|..+|+               |.+++++.+   +.+.+++...+.|++++|..||..++
T Consensus       200 ~~~s~IT~ieqsPaLD-VVaiG~~~G~---------------ViifNlK~d---kil~sFk~d~g~VtslSFrtDG~p~l  260 (910)
T KOG1539|consen  200 EFFSRITAIEQSPALD-VVAIGLENGT---------------VIIFNLKFD---KILMSFKQDWGRVTSLSFRTDGNPLL  260 (910)
T ss_pred             ccccceeEeccCCcce-EEEEeccCce---------------EEEEEcccC---cEEEEEEccccceeEEEeccCCCeeE
Confidence            9999999999999766 7999999998               999999987   67778875569999999999999999


Q ss_pred             EEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEE
Q psy4578         745 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI  824 (860)
Q Consensus       745 asgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~  824 (860)
                      ++|+..|.+.+||++..+........|.+.|....|.|..+ +++|++.|+.+++|=.+++          ++.++.++.
T Consensus       261 as~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~----------dg~pR~LR~  329 (910)
T KOG1539|consen  261 ASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSG----------DGVPRLLRS  329 (910)
T ss_pred             EeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCC----------CCcchheee
Confidence            99999999999999998874445558989999999999776 6999999999999987753          345788889


Q ss_pred             ecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         825 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       825 ~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      -.||..+..++.|.-...+.+.+.+.|++++
T Consensus       330 R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r  360 (910)
T KOG1539|consen  330 RGGHSAPPSCIRFYGSQGHFILSAKQDRTLR  360 (910)
T ss_pred             ccCCCCCchheeeeccCcEEEEecccCcchh
Confidence            9999999999999854444577999998766

>KOG2919|consensus

Probab=99.54  E-value=1.5e-13  Score=141.11  Aligned_cols=220  Identities=20%  Similarity=0.357  Sum_probs=159.3

Q ss_pred             eeEEEEeeccchhhhhhhh---hccc---ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-----CCCC
Q psy4578         600 IEEVMYLENKTRAQICQLL---DKLR---LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-----AHTA  668 (860)
Q Consensus       600 l~~il~l~n~~~~~l~~l~---~~~~---~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-----~h~~  668 (860)
                      ...-+.+|+.-.+++...+   +|.+   .-.+++|+| ++..|++|. ...|++||+........+....     +..+
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            3445566776666665544   3333   356899998 677777654 5799999994322222222222     3367


Q ss_pred             CeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee
Q psy4578         669 EVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS  748 (860)
Q Consensus       669 ~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs  748 (860)
                      .+.|++|+|.....+++|+...+               +-||.-...   .++..+.+|.+.|+.++|+++|+. |.+|+
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q~---------------~giy~~~~~---~pl~llggh~gGvThL~~~edGn~-lfsGa  269 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQR---------------VGIYNDDGR---RPLQLLGGHGGGVTHLQWCEDGNK-LFSGA  269 (406)
T ss_pred             eeeeeeccCCCCcceeeecccce---------------eeeEecCCC---CceeeecccCCCeeeEEeccCcCe-ecccc
Confidence            89999999988878999987776               666655554   677888899999999999999997 55665


Q ss_pred             C-CCcEEEEeCCCCceeeEEeccCCC---ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEE
Q psy4578         749 A-DKTVALWDLRNLKLKLHSFESHKD---EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI  824 (860)
Q Consensus       749 ~-Dg~I~IWDl~~~~~~~~~~~~h~~---~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~  824 (860)
                      + |-.|..||+|....++..+..|.+   .-.-....|+|++ |++|+.||.|++||++....             .+..
T Consensus       270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~-LasG~tdG~V~vwdlk~~gn-------------~~sv  335 (406)
T KOG2919|consen  270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEI-LASGDTDGSVRVWDLKDLGN-------------EVSV  335 (406)
T ss_pred             cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCce-eeccCCCccEEEEecCCCCC-------------cccc
Confidence            4 788999999998877777777765   2223455788984 99999999999999987332             2344


Q ss_pred             ecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         825 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       825 ~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      ...|...+..++++|--+ ++|+++......
T Consensus       336 ~~~~sd~vNgvslnP~mp-ilatssGqr~f~  365 (406)
T KOG2919|consen  336 TGNYSDTVNGVSLNPIMP-ILATSSGQRIFK  365 (406)
T ss_pred             cccccccccceecCcccc-eeeeccCceeec
Confidence            556788899999999977 677776554433

>KOG1274|consensus

Probab=99.54  E-value=6e-13  Score=152.87  Aligned_cols=199  Identities=21%  Similarity=0.332  Sum_probs=150.1

Q ss_pred             EEeeccchhhhhhhhhc-ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         604 MYLENKTRAQICQLLDK-LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~-~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      +..+.........++.. .-++.+++++- +|.++|.||.|-.|++-+..+.   .....+.+|.++|.++.|+|.+. +
T Consensus        78 v~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~---s~~~~lrgh~apVl~l~~~p~~~-f  152 (933)
T KOG1274|consen   78 VLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDS---SQEKVLRGHDAPVLQLSYDPKGN-F  152 (933)
T ss_pred             EEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEecccc---chheeecccCCceeeeeEcCCCC-E
Confidence            33344444443333332 35789999996 8899999999999999999884   44677889999999999999998 5


Q ss_pred             EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC----C-CCCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578         683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA----H-TAEVNCLSFNPYSEYILATGSADKTVALWD  757 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~----h-~~~I~sl~~sp~g~~llasgs~Dg~I~IWD  757 (860)
                      ||+.+-||.               |++||+.++.....+..+..    . ...++.++|+|+|.. ++..+.|+.|.+|+
T Consensus       153 LAvss~dG~---------------v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~  216 (933)
T KOG1274|consen  153 LAVSSCDGK---------------VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYS  216 (933)
T ss_pred             EEEEecCce---------------EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEc
Confidence            899999998               99999988643222221111    1 345677999999886 77778899999999


Q ss_pred             CCCCceeeEEec--cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEE
Q psy4578         758 LRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF  835 (860)
Q Consensus       758 l~~~~~~~~~~~--~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i  835 (860)
                      ..++.. ...+.  .+...+.++.|+|.|.| ||+++.||.|.|||..+...                  ......|.++
T Consensus       217 r~~we~-~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t~~~------------------~~~~~~Vc~~  276 (933)
T KOG1274|consen  217 RKGWEL-QFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDTHER------------------HEFKRAVCCE  276 (933)
T ss_pred             cCCcee-heeecccccccceEEEEEcCCCcE-EeeeccCCcEEEEecccchh------------------ccccceeEEE
Confidence            999886 33333  24445999999999997 89999999999999997221                  1124578999


Q ss_pred             EEccCCCe
Q psy4578         836 SWNPNEPW  843 (860)
Q Consensus       836 ~~spdg~~  843 (860)
                      +|.|+++-
T Consensus       277 aw~p~~n~  284 (933)
T KOG1274|consen  277 AWKPNANA  284 (933)
T ss_pred             ecCCCCCe
Confidence            99998874

>KOG1310|consensus

Probab=99.53  E-value=8.2e-14  Score=151.17  Aligned_cols=226  Identities=21%  Similarity=0.351  Sum_probs=165.7

Q ss_pred             hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCee-eccCCCCCeeEEEEccC-CCeEEEEEeCC
Q psy4578         612 AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSH-TVDAHTAEVNCLSFNPY-SEYILATGSAD  689 (860)
Q Consensus       612 ~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~-~~~~h~~~V~~l~~sp~-g~~llasgs~D  689 (860)
                      .....+.+|.+.|+|+.|+. +|.+|++|+.|-.+.|||.-..   +++. .-.+|...|.|+.|-|. ++.++++|..|
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~---KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD  116 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEY---KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD  116 (758)
T ss_pred             chhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhc---ceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence            34455778999999999997 8999999999999999999753   3333 33689999999999984 55689999999


Q ss_pred             CceeeecccccccCCCcEEEEeCCCCC-------CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc
Q psy4578         690 KTQFEVEEEEEENYDQKLMIWDTRSHN-------VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK  762 (860)
Q Consensus       690 g~i~~~~~~~~~~~dg~I~iwDl~~~~-------~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~  762 (860)
                      ..               |+++|+...+       ..........|+..|..++-.|++.+.+.+++.||+|+-+|++...
T Consensus       117 k~---------------i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  117 KL---------------IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             ce---------------EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence            98               9999987521       2245556778999999999999998899999999999999999854


Q ss_pred             eeeEE---------eccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc-cCCCC---ccEE-EecCc
Q psy4578         763 LKLHS---------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA-EDGPP---ELLF-IHGGH  828 (860)
Q Consensus       763 ~~~~~---------~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~-~~~~~---~~i~-~~~~h  828 (860)
                      .+-..         +...--...++..+|..+++|+.|+.|-..++||.+........... ...++   .++. ...+|
T Consensus       182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h  261 (758)
T KOG1310|consen  182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH  261 (758)
T ss_pred             cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc
Confidence            32111         11122356889999999999999999999999996542221111111 11111   1121 12222


Q ss_pred             c-----------CceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         829 T-----------AKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       829 ~-----------~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .           ..++-++|+|+|.-++++-+.+.+-.+
T Consensus       262 lkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlf  300 (758)
T KOG1310|consen  262 LKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLF  300 (758)
T ss_pred             ccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEE
Confidence            2           126778999999999999888876554

>KOG2055|consensus

Probab=99.53  E-value=2.8e-13  Score=144.91  Aligned_cols=201  Identities=15%  Similarity=0.234  Sum_probs=158.9

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      .++.|++|.|+| ...++++|+.||+++||.+.... ...++.+.-...+|.+.+|.|+|...+++++....        
T Consensus       212 s~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~-N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky--------  281 (514)
T KOG2055|consen  212 SHGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKV-NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKY--------  281 (514)
T ss_pred             CcCCceEEEecC-CCceEEEecCCCcEEEEEecCcc-ChhheeeeeccCccceeeecCCCceEEEecccceE--------
Confidence            357899999999 78899999999999999997543 34566666667899999999999967888887776        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCC-CCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEE
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHT-AEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV  778 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~-~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l  778 (860)
                             ++.||+.+.+. ..+....++. ..+.....+|++++ ++..+..|.|.+-...++.. +..+. -.+.|..+
T Consensus       282 -------~ysyDle~ak~-~k~~~~~g~e~~~~e~FeVShd~~f-ia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~  350 (514)
T KOG2055|consen  282 -------LYSYDLETAKV-TKLKPPYGVEEKSMERFEVSHDSNF-IAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDF  350 (514)
T ss_pred             -------EEEeecccccc-ccccCCCCcccchhheeEecCCCCe-EEEcccCceEEeehhhhhhh-hheee-eccEEeeE
Confidence                   99999988754 4444444554 35667888999995 88889999999999998887 66666 46789999


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|+.+|+. |+.++.+|.|.+||++...+...+...            | .-.=+++|.+++|.| +|+||+.|+|.|
T Consensus       351 ~fsSdsk~-l~~~~~~GeV~v~nl~~~~~~~rf~D~------------G-~v~gts~~~S~ng~y-lA~GS~~GiVNI  413 (514)
T KOG2055|consen  351 TFSSDSKE-LLASGGTGEVYVWNLRQNSCLHRFVDD------------G-SVHGTSLCISLNGSY-LATGSDSGIVNI  413 (514)
T ss_pred             EEecCCcE-EEEEcCCceEEEEecCCcceEEEEeec------------C-ccceeeeeecCCCce-EEeccCcceEEE
Confidence            99999986 667777999999999986554433221            1 112367888999995 889999999998

>KOG1273|consensus

Probab=99.53  E-value=4.2e-13  Score=137.32  Aligned_cols=249  Identities=14%  Similarity=0.283  Sum_probs=168.8

Q ss_pred             CcccccceeeeeeecceeecccceeEEEEeeccchhhhhhhh-hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCC
Q psy4578         577 VTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLL-DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN  655 (860)
Q Consensus       577 ~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~-~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~  655 (860)
                      .++..++..+..++.|+.+|.      +.+|+..+..+.+++ .|-.+|++++|++ +++.|+|+|.|..|.+||+..|.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~------vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGR------VVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGS   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCc------EEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCC
Confidence            455667777777777766665      444555555566655 4568999999998 89999999999999999999865


Q ss_pred             cccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc----------cc---------------------ccCC
Q psy4578         656 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE----------EE---------------------ENYD  704 (860)
Q Consensus       656 ~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~----------~~---------------------~~~d  704 (860)
                      .   +..+ ....+|+.+.|+|..++.++++-.+..-.+....          ..                     |...
T Consensus        99 ~---l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK  174 (405)
T KOG1273|consen   99 P---LKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK  174 (405)
T ss_pred             c---eeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCc
Confidence            3   3333 2467899999998766544444322221111111          00                     3457


Q ss_pred             CcEEEEeCCCCCCCCCeeeecCCC-CCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee--------eEEec--cCCC
Q psy4578         705 QKLMIWDTRSHNVSKPSHTVDAHT-AEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK--------LHSFE--SHKD  773 (860)
Q Consensus       705 g~I~iwDl~~~~~~~~~~~~~~h~-~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~--------~~~~~--~h~~  773 (860)
                      |.+.++|..+.   +.+..++-.+ ..|..+.++-.|.+ |+.-+.|..|+.|+++.-...        .+.++  -...
T Consensus       175 Gkllv~~a~t~---e~vas~rits~~~IK~I~~s~~g~~-liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~  250 (405)
T KOG1273|consen  175 GKLLVYDAETL---ECVASFRITSVQAIKQIIVSRKGRF-LIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL  250 (405)
T ss_pred             ceEEEEecchh---eeeeeeeechheeeeEEEEeccCcE-EEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence            78999998886   4444444333 67899999999996 888899999999998732110        11111  1234


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCcc-CceEEEEEccCCCeEEEEEeCCC
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~-~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      +-.+++|+.+|.+++++......++||.-..+              .++..+.|.. ....++.|+|-... +++- ..|
T Consensus       251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G--------------sLVKILhG~kgE~l~DV~whp~rp~-i~si-~sg  314 (405)
T KOG1273|consen  251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIG--------------SLVKILHGTKGEELLDVNWHPVRPI-IASI-ASG  314 (405)
T ss_pred             hhhheeecCCccEEEeccccceeEEEEecCCc--------------ceeeeecCCchhheeecccccceee-eeec-cCC
Confidence            55779999999986666667789999998774              3455555555 56788999999884 5555 555


Q ss_pred             eEee
Q psy4578         853 IMQK  856 (860)
Q Consensus       853 ~IrI  856 (860)
                      ++.|
T Consensus       315 ~v~i  318 (405)
T KOG1273|consen  315 VVYI  318 (405)
T ss_pred             ceEE
Confidence            5554

>KOG1445|consensus

Probab=99.52  E-value=1.1e-13  Score=152.09  Aligned_cols=181  Identities=22%  Similarity=0.402  Sum_probs=138.4

Q ss_pred             EeCCCcEEEEEcCCCCc-ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCC
Q psy4578         640 VADDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVS  718 (860)
Q Consensus       640 gs~DG~I~IWd~~~~~~-~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~  718 (860)
                      ++..|.|-||+++.... ..-+..-......|+++.|.|.+..-++++++||.               |++|.+..+...
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~---------------i~lWr~~a~gl~  663 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQ---------------INLWRLTANGLP  663 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCce---------------EEEEEeccCCCC
Confidence            45578999999975321 11111112345789999999987777999999998               999988765432


Q ss_pred             ----CCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC
Q psy4578         719 ----KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD  794 (860)
Q Consensus       719 ----~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D  794 (860)
                          .+-..+..|...|+++.|||-...+|++++.|.+|++||+++... ...+.+|.+.|.+++|+|+|+. ++|.+.|
T Consensus       664 e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-~~~l~gHtdqIf~~AWSpdGr~-~AtVcKD  741 (1012)
T KOG1445|consen  664 ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-YSRLVGHTDQIFGIAWSPDGRR-IATVCKD  741 (1012)
T ss_pred             cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-hheeccCcCceeEEEECCCCcc-eeeeecC
Confidence                344567889999999999997777899999999999999999887 6678999999999999999996 8999999


Q ss_pred             CcEEEEECCCCCcccccccccCCCCccEEEecCc-cCceEEEEEccCCCeEEEEEeC
Q psy4578         795 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       795 g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h-~~~I~~i~~spdg~~Llasgs~  850 (860)
                      |+|++|+.++.+.....             -.+- ...--.|.|.-+|++++++|-+
T Consensus       742 g~~rVy~Prs~e~pv~E-------------g~gpvgtRgARi~wacdgr~viv~Gfd  785 (1012)
T KOG1445|consen  742 GTLRVYEPRSREQPVYE-------------GKGPVGTRGARILWACDGRIVIVVGFD  785 (1012)
T ss_pred             ceEEEeCCCCCCCcccc-------------CCCCccCcceeEEEEecCcEEEEeccc
Confidence            99999999885543221             1111 1223457799999987766543

>KOG0642|consensus

Probab=99.52  E-value=1.3e-13  Score=150.92  Aligned_cols=207  Identities=25%  Similarity=0.353  Sum_probs=162.7

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC-----CCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS-----HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK  690 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~-----~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg  690 (860)
                      .+..|.+.|..+.|++ ....|++|+.||.+.+|+++.     .....++.++.+|.++|.|++..+.+.+ +.+|+.||
T Consensus       289 tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~-~ysgg~Dg  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH-CYSGGIDG  366 (577)
T ss_pred             eeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE-EEeeccCc
Confidence            4556778899999998 678899999999999999942     2234678899999999999999999986 89999999


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCC-------CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHN-------VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL  763 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~-------~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~  763 (860)
                      +               |+.|++....       .......+.||++.|+.+++|+...+ |++++.||++++|+......
T Consensus       367 ~---------------I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  367 T---------------IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP  430 (577)
T ss_pred             e---------------eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc
Confidence            9               8888554211       11234567899999999999998886 88999999999998754332


Q ss_pred             e-------------------------------------------eEEecc-------CCCceEEEEEcCCCCCEEEEEEC
Q psy4578         764 K-------------------------------------------LHSFES-------HKDEIFQVQWSPHNETILASSGT  793 (860)
Q Consensus       764 ~-------------------------------------------~~~~~~-------h~~~V~~l~fsp~g~~lL~tgs~  793 (860)
                      .                                           +..+..       ....+..+.++|.+. +.+++..
T Consensus       431 ~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~he  509 (577)
T KOG0642|consen  431 CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHE  509 (577)
T ss_pred             cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEeccc
Confidence            0                                           000100       113466788889887 5889999


Q ss_pred             CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         794 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       794 Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |+.|+++|..++              .+++....|...++++++.|+|.+ +.+++.|+.+++
T Consensus       510 d~~Ir~~dn~~~--------------~~l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l  557 (577)
T KOG0642|consen  510 DRSIRFFDNKTG--------------KILHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRL  557 (577)
T ss_pred             CCceeccccccc--------------ccchheeeccceecceeecCCCce-EEeecCCceeeh
Confidence            999999998884              455666678999999999999997 669999998875

>KOG2048|consensus

Probab=99.52  E-value=8.9e-13  Score=147.08  Aligned_cols=204  Identities=15%  Similarity=0.277  Sum_probs=155.3

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC-CCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-HTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      .+..|++++++. ..+.||.+-.||.|-+|++..+  +.....+.+ ....|.+++|++.++  |.+.+.+|+       
T Consensus        24 ~Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~--w~~~~vi~g~~drsIE~L~W~e~~R--LFS~g~sg~-------   91 (691)
T KOG2048|consen   24 KPSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNN--WFLEPVIHGPEDRSIESLAWAEGGR--LFSSGLSGS-------   91 (691)
T ss_pred             eccceEEEEEec-cCCceeeeccCCcEEEEccCCC--ceeeEEEecCCCCceeeEEEccCCe--EEeecCCce-------
Confidence            357899999997 6677999999999999999875  333333434 357899999997666  566667787       


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceee-EEeccCCCceEE
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQ  777 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~-~~~~~h~~~V~~  777 (860)
                              |.-||+.+.   ++...+....+.|.+++.+|.+. .++.|+.||.+..++...+.... ..+....+.|.+
T Consensus        92 --------i~EwDl~~l---k~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLs  159 (691)
T KOG2048|consen   92 --------ITEWDLHTL---KQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLS  159 (691)
T ss_pred             --------EEEEecccC---ceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEE
Confidence                    999999987   77778888899999999999998 59999999988888887766422 223445689999


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         778 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       778 l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++|+|++.. +++|+.||.|++||..++........      +......+...-|+++.|-.++.  +++|...|+|++
T Consensus       160 lsw~~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~------~~d~l~k~~~~iVWSv~~Lrd~t--I~sgDS~G~V~F  229 (691)
T KOG2048|consen  160 LSWNPTGTK-IAGGSIDGVIRIWDVKSGQTLHIITM------QLDRLSKREPTIVWSVLFLRDST--IASGDSAGTVTF  229 (691)
T ss_pred             EEecCCccE-EEecccCceEEEEEcCCCceEEEeee------cccccccCCceEEEEEEEeecCc--EEEecCCceEEE
Confidence            999999986 89999999999999998654431110      01111112344588888888876  778888898875

>KOG2106|consensus

Probab=99.51  E-value=9.6e-13  Score=141.99  Aligned_cols=231  Identities=20%  Similarity=0.352  Sum_probs=166.7

Q ss_pred             eeEEEEeeccchhhhhhh-hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC-CCeeEEEEcc
Q psy4578         600 IEEVMYLENKTRAQICQL-LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT-AEVNCLSFNP  677 (860)
Q Consensus       600 l~~il~l~n~~~~~l~~l-~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~-~~V~~l~~sp  677 (860)
                      ...++.+|+..++....- ......|....|+|.+.+++++++. |.+..|+.+.+...+....+..++ ..|.|++|.+
T Consensus       178 ~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e  256 (626)
T KOG2106|consen  178 NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE  256 (626)
T ss_pred             CccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcC
Confidence            345666777666554433 3345678899999998898888775 899999999876555555554443 5799999999


Q ss_pred             CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578         678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD  757 (860)
Q Consensus       678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD  757 (860)
                      +|+  +++|..+|.               |.||+..+.   +.......|.+.|.+++...+|.  |++|+.|..|..||
T Consensus       257 ngd--viTgDS~G~---------------i~Iw~~~~~---~~~k~~~aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd  314 (626)
T KOG2106|consen  257 NGD--VITGDSGGN---------------ILIWSKGTN---RISKQVHAHDGGVFSLCMLRDGT--LLSGGKDRKIILWD  314 (626)
T ss_pred             CCC--EEeecCCce---------------EEEEeCCCc---eEEeEeeecCCceEEEEEecCcc--EeecCccceEEecc
Confidence            998  789999998               999999776   44444558999999999999997  66799999999999


Q ss_pred             CCCCce-----e----------------------------------eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEE
Q psy4578         758 LRNLKL-----K----------------------------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLH  798 (860)
Q Consensus       758 l~~~~~-----~----------------------------------~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~  798 (860)
                      -.....     +                                  .....+|....+.++.+|+... ++||+.|+.++
T Consensus       315 ~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q-~~T~gqdk~v~  393 (626)
T KOG2106|consen  315 DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQ-LLTCGQDKHVR  393 (626)
T ss_pred             ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhh-eeeccCcceEE
Confidence            432111     0                                  1123457788899999999885 88999999999


Q ss_pred             EEECCCCCccccccc-------ccC-----------------CCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         799 VWDLSKIGEEQSTED-------AED-----------------GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       799 iWdl~~~~~~~~~~~-------~~~-----------------~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      +|+-....-...+..       ...                 ....++..... ..+++.++|+|+|. ++|.|+.|+.|
T Consensus       394 lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~i  471 (626)
T KOG2106|consen  394 LWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHI  471 (626)
T ss_pred             EccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeE
Confidence            999222111111110       000                 11223333334 78999999999999 48899999988


Q ss_pred             ee
Q psy4578         855 QK  856 (860)
Q Consensus       855 rI  856 (860)
                      .|
T Consensus       472 yi  473 (626)
T KOG2106|consen  472 YI  473 (626)
T ss_pred             EE
Confidence            76

>KOG2445|consensus

Probab=99.51  E-value=7.8e-13  Score=135.23  Aligned_cols=187  Identities=19%  Similarity=0.305  Sum_probs=143.7

Q ss_pred             hhhcccceeeeEee-ccCCcEEEEEeCCCcEEEEEcCC------CCcccCeeeccCCCCCeeEEEEccCC-CeEEEEEeC
Q psy4578         617 LLDKLRLLIDVAWH-LLHESLFGSVADDQKLMIWDTRS------HNVSKPSHTVDAHTAEVNCLSFNPYS-EYILATGSA  688 (860)
Q Consensus       617 l~~~~~~V~~v~~s-p~~~~~lasgs~DG~I~IWd~~~------~~~~~~~~~~~~h~~~V~~l~~sp~g-~~llasgs~  688 (860)
                      ...|.+.|..|.|. |.-|..+|+++.|+++.||.-..      +.......++....+.|+++.|.|.. ...+++++.
T Consensus        55 Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a  134 (361)
T KOG2445|consen   55 WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA  134 (361)
T ss_pred             EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEecc
Confidence            44577899999995 55689999999999999997631      12233456677778999999999852 235899999


Q ss_pred             CCceeeecccccc------------------------------------------cC------CCcEEEEeCCCCC-CCC
Q psy4578         689 DKTQFEVEEEEEE------------------------------------------NY------DQKLMIWDTRSHN-VSK  719 (860)
Q Consensus       689 Dg~i~~~~~~~~~------------------------------------------~~------dg~I~iwDl~~~~-~~~  719 (860)
                      ||.+++++.-...                                          +.      -+++.||...... ...
T Consensus       135 DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~  214 (361)
T KOG2445|consen  135 DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL  214 (361)
T ss_pred             CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee
Confidence            9999888654320                                          11      2367888765543 445


Q ss_pred             CeeeecCCCCCeEEEEEcCCC---CcEEEEeeCCCcEEEEeCCCCc-------------------eeeEEeccCCCceEE
Q psy4578         720 PSHTVDAHTAEVNCLSFNPYS---EYILATGSADKTVALWDLRNLK-------------------LKLHSFESHKDEIFQ  777 (860)
Q Consensus       720 ~~~~~~~h~~~I~sl~~sp~g---~~llasgs~Dg~I~IWDl~~~~-------------------~~~~~~~~h~~~V~~  777 (860)
                      .+..+.+|+.+|++++|.|+-   -+++|+++.|| |+||.+....                   ..+..+.+|++.|+.
T Consensus       215 kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr  293 (361)
T KOG2445|consen  215 KVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR  293 (361)
T ss_pred             eehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE
Confidence            667788999999999999963   35899999999 9999987422                   124557789999999


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578         778 VQWSPHNETILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       778 l~fsp~g~~lL~tgs~Dg~I~iWdl~~~  805 (860)
                      +.|+-.|. +|++.|.||++++|...-.
T Consensus       294 v~wNmtGt-iLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  294 VRWNMTGT-ILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             EEEeeeee-EEeecCCCceeeehhhhhh
Confidence            99999997 6999999999999986653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.51  E-value=1.7e-12  Score=140.49  Aligned_cols=182  Identities=12%  Similarity=0.108  Sum_probs=130.7

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR  713 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~  713 (860)
                      +.++++++.||.+++||..++   +....+..+. .+.+++|+|++..++++++.++.               |++||..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~---~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~---------------v~~~d~~   61 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATL---EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDT---------------IQVIDLA   61 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCC---ceEEEEECCC-CCCceEECCCCCEEEEEECCCCe---------------EEEEECC
Confidence            357889999999999999875   3445555443 46789999999976678877887               9999998


Q ss_pred             CCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC
Q psy4578         714 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT  793 (860)
Q Consensus       714 ~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~  793 (860)
                      ++   .....+..+. .+..++|+|+++.++++++.|+.+++||+++... +..+. +...+.+++|+|+|.. +++++.
T Consensus        62 ~~---~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~-l~~~~~  134 (300)
T TIGR03866        62 TG---EVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKI-VVNTSE  134 (300)
T ss_pred             CC---cEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCE-EEEEec
Confidence            76   3333444333 3567899999997666777789999999998765 55554 2345688999999986 666665


Q ss_pred             CC-cEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         794 DR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       794 Dg-~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++ .+.+||..+....              .... ....+..++|+|+|+++++++..++.+++
T Consensus       135 ~~~~~~~~d~~~~~~~--------------~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i  183 (300)
T TIGR03866       135 TTNMAHFIDTKTYEIV--------------DNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSV  183 (300)
T ss_pred             CCCeEEEEeCCCCeEE--------------EEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEE
Confidence            54 5777898763321              1111 12345678999999987777777777664

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1523|consensus

Probab=99.51  E-value=5.7e-13  Score=137.02  Aligned_cols=216  Identities=18%  Similarity=0.310  Sum_probs=169.7

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      ..+|+|.+|++ ++..+|.+.....|.||............++..|...|++|.|+|..+. +++|+.|..         
T Consensus        10 ~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snr-Ivtcs~drn---------   78 (361)
T KOG1523|consen   10 LEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNR-IVTCSHDRN---------   78 (361)
T ss_pred             cCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCc-eeEccCCCC---------
Confidence            46899999998 7888999999999999999887767889999999999999999999986 889998887         


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee---eEEeccCCCceEE
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK---LHSFESHKDEIFQ  777 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~---~~~~~~h~~~V~~  777 (860)
                            -++|....+...++...+..+....+++.|+|.++. ||+||.-..|.||-.+.....   -+.-..+.+.|.+
T Consensus        79 ------ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enk-FAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s  151 (361)
T KOG1523|consen   79 ------AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENK-FAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS  151 (361)
T ss_pred             ------ccccccCCCCeeccceeEEEeccceeeEeecCcCce-EEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence                  889998666666777788889999999999999984 999999999999977654431   1223457789999


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCC----CCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         778 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG----PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       778 l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~----~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                      +.|+|++- +|++|+.|+.++++...-......-.....+    -+.++.......+.|..+.|+|+|.. ++-.+.|..
T Consensus       152 ldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~-lawv~Hds~  229 (361)
T KOG1523|consen  152 LDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR-LAWVGHDST  229 (361)
T ss_pred             eeccCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE-eeEecCCCc
Confidence            99999986 6999999999999975432221111111111    12233344455688999999999995 667778877


Q ss_pred             Eee
Q psy4578         854 MQK  856 (860)
Q Consensus       854 IrI  856 (860)
                      +.+
T Consensus       230 v~~  232 (361)
T KOG1523|consen  230 VSF  232 (361)
T ss_pred             eEE
Confidence            765

>KOG1063|consensus

Probab=99.50  E-value=3e-13  Score=150.91  Aligned_cols=227  Identities=19%  Similarity=0.305  Sum_probs=166.2

Q ss_pred             hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC-CCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578         614 ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS-HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ  692 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~-~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i  692 (860)
                      ...+.+|.+.|.++.|+| .+.++++.+.|.+-|+|-... ......+...+-|...++|+++-+. +..|++|.+...+
T Consensus       354 ~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVl  431 (764)
T KOG1063|consen  354 EPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVL  431 (764)
T ss_pred             ccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-Cceeeecccceee
Confidence            444568889999999999 788999999999999997652 1123344455678899999999885 4458888777765


Q ss_pred             eeeccccc---------c-----------------------------cCCCcE-EEE-eCC---------CC--------
Q psy4578         693 FEVEEEEE---------E-----------------------------NYDQKL-MIW-DTR---------SH--------  715 (860)
Q Consensus       693 ~~~~~~~~---------~-----------------------------~~dg~I-~iw-Dl~---------~~--------  715 (860)
                      ++++.-..         +                             ..+|.. ..| ...         .+        
T Consensus       432 RvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~  511 (764)
T KOG1063|consen  432 RVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQ  511 (764)
T ss_pred             eeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHH
Confidence            55543211         0                             000100 001 000         00        


Q ss_pred             -CCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEE
Q psy4578         716 -NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA  789 (860)
Q Consensus       716 -~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~  789 (860)
                       .....+..+.||...|++++.+|+|+ ++||++..     ..|++|+..+... ...+.+|.-.|+.++|||||++ |+
T Consensus       512 ~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~-~~~L~~HsLTVT~l~FSpdg~~-LL  588 (764)
T KOG1063|consen  512 NTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQ-VQELEGHSLTVTRLAFSPDGRY-LL  588 (764)
T ss_pred             hccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhh-hheecccceEEEEEEECCCCcE-EE
Confidence             01123445679999999999999999 69888764     3599999998886 6789999999999999999996 78


Q ss_pred             EEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         790 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       790 tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +.+.|+++.+|.........          ......+.|..-|++..|+|++.+ ++|+|.|+.|+|
T Consensus       589 svsRDRt~sl~~~~~~~~~e----------~~fa~~k~HtRIIWdcsW~pde~~-FaTaSRDK~VkV  644 (764)
T KOG1063|consen  589 SVSRDRTVSLYEVQEDIKDE----------FRFACLKAHTRIIWDCSWSPDEKY-FATASRDKKVKV  644 (764)
T ss_pred             EeecCceEEeeeeecccchh----------hhhccccccceEEEEcccCcccce-eEEecCCceEEE
Confidence            99999999999986532211          112336689999999999999997 889999999986

>KOG2919|consensus

Probab=99.47  E-value=1.1e-12  Score=134.67  Aligned_cols=202  Identities=21%  Similarity=0.405  Sum_probs=149.2

Q ss_pred             cccceeeeEeec------cCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC---CCeeEEEEccCCCeEEEEEeCCC
Q psy4578         620 KLRLLIDVAWHL------LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT---AEVNCLSFNPYSEYILATGSADK  690 (860)
Q Consensus       620 ~~~~V~~v~~sp------~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~---~~V~~l~~sp~g~~llasgs~Dg  690 (860)
                      ....|.+.+|-+      .+..++++.+.+.-|++||.-+++.......+ .|.   ....+++|+|||.+ +.+|. ..
T Consensus       103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGeq-lfaGy-kr  179 (406)
T KOG2919|consen  103 EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGEQ-LFAGY-KR  179 (406)
T ss_pred             cCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCCe-Eeecc-cc
Confidence            346788999963      26778999999999999999987654333322 233   34578999999997 55554 44


Q ss_pred             ceeeecccccccCCCcEEEEeC-CCCCCCCCeeeec-----CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDT-RSHNVSKPSHTVD-----AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK  764 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl-~~~~~~~~~~~~~-----~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~  764 (860)
                      +               |++||+ +.+.. ..+....     +..+-|.|++|+|.....++.|+....+-||.-..... 
T Consensus       180 c---------------irvFdt~RpGr~-c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-  242 (406)
T KOG2919|consen  180 C---------------IRVFDTSRPGRD-CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-  242 (406)
T ss_pred             e---------------EEEeeccCCCCC-CcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-
Confidence            4               999999 44432 2222222     33678899999998887799999999988887776665 


Q ss_pred             eEEeccCCCceEEEEEcCCCCCEEEEEE-CCCcEEEEECCCCCcccccccccCCCCccEEEecCccC---ceEEEEEccC
Q psy4578         765 LHSFESHKDEIFQVQWSPHNETILASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA---KISDFSWNPN  840 (860)
Q Consensus       765 ~~~~~~h~~~V~~l~fsp~g~~lL~tgs-~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~---~I~~i~~spd  840 (860)
                      +..+.+|.+.|+.++|+++|.. |.+|. .|-.|..||++...             .++..+..|.+   .-.-+...|+
T Consensus       243 l~llggh~gGvThL~~~edGn~-lfsGaRk~dkIl~WDiR~~~-------------~pv~~L~rhv~~TNQRI~FDld~~  308 (406)
T KOG2919|consen  243 LQLLGGHGGGVTHLQWCEDGNK-LFSGARKDDKILCWDIRYSR-------------DPVYALERHVGDTNQRILFDLDPK  308 (406)
T ss_pred             eeeecccCCCeeeEEeccCcCe-ecccccCCCeEEEEeehhcc-------------chhhhhhhhccCccceEEEecCCC
Confidence            7888899999999999999998 45554 68899999999843             34455555544   2223566789


Q ss_pred             CCeEEEEEeCCCeEee
Q psy4578         841 EPWVICSVSEDNIMQK  856 (860)
Q Consensus       841 g~~Llasgs~Dg~IrI  856 (860)
                      |+ +|++|+.||.|++
T Consensus       309 ~~-~LasG~tdG~V~v  323 (406)
T KOG2919|consen  309 GE-ILASGDTDGSVRV  323 (406)
T ss_pred             Cc-eeeccCCCccEEE
Confidence            99 5889999999986

>KOG1188|consensus

Probab=99.46  E-value=1.4e-12  Score=135.17  Aligned_cols=187  Identities=23%  Similarity=0.378  Sum_probs=142.7

Q ss_pred             cEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC-CCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578         635 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY-SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR  713 (860)
Q Consensus       635 ~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~  713 (860)
                      ..+|++..+|.|++||..++   +.+..+++++..+..+.|... +.+.+.+|+.||+               |++||++
T Consensus        41 ~~vav~lSngsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~---------------Vr~wD~R  102 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGT---------------VRLWDIR  102 (376)
T ss_pred             eeEEEEecCCeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCe---------------EEEEEee
Confidence            56888999999999999984   567788899999999999764 6678999999999               9999999


Q ss_pred             CCCCCCCeeeecCCC-CCeEEEEEcCCCCcEEEEeeC----CCcEEEEeCCCCceeeEE-eccCCCceEEEEEcCCCCCE
Q psy4578         714 SHNVSKPSHTVDAHT-AEVNCLSFNPYSEYILATGSA----DKTVALWDLRNLKLKLHS-FESHKDEIFQVQWSPHNETI  787 (860)
Q Consensus       714 ~~~~~~~~~~~~~h~-~~I~sl~~sp~g~~llasgs~----Dg~I~IWDl~~~~~~~~~-~~~h~~~V~~l~fsp~g~~l  787 (860)
                      .... ........+. .+..|++.+-++. ++++|+.    |-.|.+||+|..+..+.. ...|...|++++|+|..+.+
T Consensus       103 s~~e-~a~~~~~~~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl  180 (376)
T KOG1188|consen  103 SQAE-SARISWTQQSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL  180 (376)
T ss_pred             cchh-hhheeccCCCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe
Confidence            8654 3333444554 4667777765565 6888753    677999999988764444 45799999999999999999


Q ss_pred             EEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCC--CeEEEEEeCCCeE
Q psy4578         788 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNIM  854 (860)
Q Consensus       788 L~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg--~~Llasgs~Dg~I  854 (860)
                      |+||+.||.|.+||+......           ..+.....|...|..+.|..++  +  +.+-+.....
T Consensus       181 LlSGSvDGLvnlfD~~~d~Ee-----------DaL~~viN~~sSI~~igw~~~~ykr--I~clTH~Etf  236 (376)
T KOG1188|consen  181 LLSGSVDGLVNLFDTKKDNEE-----------DALLHVINHGSSIHLIGWLSKKYKR--IMCLTHMETF  236 (376)
T ss_pred             EEeecccceEEeeecCCCcch-----------hhHHHhhcccceeeeeeeecCCcce--EEEEEccCce
Confidence            999999999999999874221           1222333577889999999888  4  3344444443

>KOG2106|consensus

Probab=99.46  E-value=9.2e-12  Score=134.51  Aligned_cols=207  Identities=20%  Similarity=0.323  Sum_probs=132.2

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      .-|.|++|.+ ++. +++|.++|.|.||+..+.   +.......|.+.|.+++.-.+|.  +++|+.|..|..|+.+-..
T Consensus       247 k~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~---~~~k~~~aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~y~k  319 (626)
T KOG2106|consen  247 KFVLCVTFLE-NGD-VITGDSGGNILIWSKGTN---RISKQVHAHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDNYRK  319 (626)
T ss_pred             eEEEEEEEcC-CCC-EEeecCCceEEEEeCCCc---eEEeEeeecCCceEEEEEecCcc--EeecCccceEEeccccccc
Confidence            5699999997 343 789999999999999764   33444458999999999999997  5669999998888733210


Q ss_pred             -------c----------CCCcEEEEeCCCC----C-CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe--
Q psy4578         702 -------N----------YDQKLMIWDTRSH----N-VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD--  757 (860)
Q Consensus       702 -------~----------~dg~I~iwDl~~~----~-~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD--  757 (860)
                             .          ..+.+.|=..++.    . .........+|......++.+|+... ++|++.|+.+++|+  
T Consensus       320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q-~~T~gqdk~v~lW~~~  398 (626)
T KOG2106|consen  320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQ-LLTCGQDKHVRLWNDH  398 (626)
T ss_pred             cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhh-eeeccCcceEEEccCC
Confidence                   0          0001111100000    0 00111223345555555555555542 55555555555554  


Q ss_pred             ------------------------------------CCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         758 ------------------------------------LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       758 ------------------------------------l~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                                                          .++... +..... ..++++++|+|+|.+ |+.|+.|+.|++|-
T Consensus       399 k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~l-v~~~~d-~~~ls~v~ysp~G~~-lAvgs~d~~iyiy~  475 (626)
T KOG2106|consen  399 KLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDL-VTIHTD-NEQLSVVRYSPDGAF-LAVGSHDNHIYIYR  475 (626)
T ss_pred             ceeEEEEecCceeEeeccCcceEEEeeccceEEEEeccccee-EEEEec-CCceEEEEEcCCCCE-EEEecCCCeEEEEE
Confidence                                                444222 222233 678999999999985 99999999999999


Q ss_pred             CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      +..+.....          .+..  .|.++|+.+.|++|+++ +.+.+-|-
T Consensus       476 Vs~~g~~y~----------r~~k--~~gs~ithLDwS~Ds~~-~~~~S~d~  513 (626)
T KOG2106|consen  476 VSANGRKYS----------RVGK--CSGSPITHLDWSSDSQF-LVSNSGDY  513 (626)
T ss_pred             ECCCCcEEE----------Eeee--ecCceeEEeeecCCCce-EEeccCce
Confidence            987544321          1222  23489999999999997 44555543

>KOG2096|consensus

Probab=99.45  E-value=1.8e-12  Score=132.93  Aligned_cols=184  Identities=20%  Similarity=0.303  Sum_probs=135.1

Q ss_pred             eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc--------------------------------ccCCCcEE
Q psy4578         661 HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE--------------------------------ENYDQKLM  708 (860)
Q Consensus       661 ~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~--------------------------------~~~dg~I~  708 (860)
                      ..+++|.+.|++++|+.+|.+ |++++.|++|++|+.++=                                ......++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~-lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKK-LATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhccCCceeeeEEcCCCce-eEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            457899999999999999997 999999999999987642                                01234456


Q ss_pred             EEeCCCCCCCCCe---------eeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578         709 IWDTRSHNVSKPS---------HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ  779 (860)
Q Consensus       709 iwDl~~~~~~~~~---------~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~  779 (860)
                      +|.+...+.....         ..-..|...|-.+-...++.+ +++++.|..|.+||++ ++. +.........-+..+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~-imsas~dt~i~lw~lk-Gq~-L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKY-IMSASLDTKICLWDLK-GQL-LQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceE-EEEecCCCcEEEEecC-Cce-eeeecccccccccee
Confidence            6654332111110         111235556666766767774 9999999999999999 554 566665566667789


Q ss_pred             EcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         780 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       780 fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .+|+|++ +++++..-.+++|.+--.+.- .+     .....++.+.||.+.|..++|+++... +++.|.||.+||
T Consensus       236 vSP~GRF-ia~~gFTpDVkVwE~~f~kdG-~f-----qev~rvf~LkGH~saV~~~aFsn~S~r-~vtvSkDG~wri  304 (420)
T KOG2096|consen  236 VSPDGRF-IAVSGFTPDVKVWEPIFTKDG-TF-----QEVKRVFSLKGHQSAVLAAAFSNSSTR-AVTVSKDGKWRI  304 (420)
T ss_pred             eCCCCcE-EEEecCCCCceEEEEEeccCc-ch-----hhhhhhheeccchhheeeeeeCCCcce-eEEEecCCcEEE
Confidence            9999996 889999999999987542211 11     113456788999999999999999996 779999999985

>KOG0771|consensus

Probab=99.43  E-value=2.1e-12  Score=137.61  Aligned_cols=198  Identities=20%  Similarity=0.239  Sum_probs=143.8

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      +.=.+++|+. ++..+++|+.||++|||++.+   ...+.....|...|.++.|+|||.. +++-+.| .          
T Consensus       145 g~~k~vaf~~-~gs~latgg~dg~lRv~~~Ps---~~t~l~e~~~~~eV~DL~FS~dgk~-lasig~d-~----------  208 (398)
T KOG0771|consen  145 GQQKVVAFNG-DGSKLATGGTDGTLRVWEWPS---MLTILEEIAHHAEVKDLDFSPDGKF-LASIGAD-S----------  208 (398)
T ss_pred             CcceEEEEcC-CCCEeeeccccceEEEEecCc---chhhhhhHhhcCccccceeCCCCcE-EEEecCC-c----------
Confidence            3337899997 789999999999999999766   3445666788999999999999995 7777777 4          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCC---C-cEEEEeeCCCcEEEEeCCCCce----eeEEeccCCC
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS---E-YILATGSADKTVALWDLRNLKL----KLHSFESHKD  773 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g---~-~llasgs~Dg~I~IWDl~~~~~----~~~~~~~h~~  773 (860)
                           .+||+..++........ .........+.|+.++   . ++++....-+.|+.||+..+..    ...+......
T Consensus       209 -----~~VW~~~~g~~~a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~  282 (398)
T KOG0771|consen  209 -----ARVWSVNTGAALARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK  282 (398)
T ss_pred             -----eEEEEeccCchhhhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence                 89999998733222211 2233445677787766   2 2344445567788877765443    2233333445


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                      .|++++.+++|++ ++.|+.||.|-|++..+.+..             .+....|...|+.+.|+||.+++ ++.+.|..
T Consensus       283 siSsl~VS~dGkf-~AlGT~dGsVai~~~~~lq~~-------------~~vk~aH~~~VT~ltF~Pdsr~~-~svSs~~~  347 (398)
T KOG0771|consen  283 SISSLAVSDDGKF-LALGTMDGSVAIYDAKSLQRL-------------QYVKEAHLGFVTGLTFSPDSRYL-ASVSSDNE  347 (398)
T ss_pred             cceeEEEcCCCcE-EEEeccCCcEEEEEeceeeee-------------EeehhhheeeeeeEEEcCCcCcc-cccccCCc
Confidence            8999999999985 999999999999999885443             33445799999999999999974 45666665


Q ss_pred             Eee
Q psy4578         854 MQK  856 (860)
Q Consensus       854 IrI  856 (860)
                      .++
T Consensus       348 ~~v  350 (398)
T KOG0771|consen  348 AAV  350 (398)
T ss_pred             eeE
Confidence            543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.43  E-value=2.9e-11  Score=134.56  Aligned_cols=219  Identities=29%  Similarity=0.509  Sum_probs=163.4

Q ss_pred             eEEEEeeccch--hhhhhhhhcccceeeeEeeccCCcEEEEEeC-CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578         601 EEVMYLENKTR--AQICQLLDKLRLLIDVAWHLLHESLFGSVAD-DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  677 (860)
Q Consensus       601 ~~il~l~n~~~--~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~-DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp  677 (860)
                      ...+..|+...  ........|...|.+++|+| ++..+++++. |+.+++|+...   ...+..+.+|...|.+++|+|
T Consensus       133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~  208 (466)
T COG2319         133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRT---GKPLSTLAGHTDPVSSLAFSP  208 (466)
T ss_pred             CccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCC---CceEEeeccCCCceEEEEEcC
Confidence            33556666654  55666777888899999998 5657777775 99999999987   355677778999999999999


Q ss_pred             CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCee-eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEE
Q psy4578         678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH-TVDAHTAEVNCLSFNPYSEYILATGSADKTVALW  756 (860)
Q Consensus       678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~-~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IW  756 (860)
                      ++..++++++.|+.               +++||...+   .... .+.+|.... ...|+|++. .+++++.|+.+++|
T Consensus       209 ~~~~~~~~~~~d~~---------------i~~wd~~~~---~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~  268 (466)
T COG2319         209 DGGLLIASGSSDGT---------------IRLWDLSTG---KLLRSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLW  268 (466)
T ss_pred             CcceEEEEecCCCc---------------EEEEECCCC---cEEeeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEe
Confidence            98855666688888               999988744   3444 577787775 448999996 47799999999999


Q ss_pred             eCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEE
Q psy4578         757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  836 (860)
Q Consensus       757 Dl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~  836 (860)
                      |.+..........+|...+.++.|+|++.. +++++.|+.+.+||..+.......           . ...|...+..+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~  335 (466)
T COG2319         269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSL-----------T-LKGHEGPVSSLS  335 (466)
T ss_pred             eecCCCcEEEEEecCCccEEEEEECCCCCE-EEEeeCCCcEEEEEcCCCceEEEe-----------e-ecccCCceEEEE
Confidence            998766423334678899999999998876 566888899999988774332111           0 236777899999


Q ss_pred             EccCCCeEEEEEeCCCeEee
Q psy4578         837 WNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       837 ~spdg~~Llasgs~Dg~IrI  856 (860)
                      |.+++..+..++..|+.+++
T Consensus       336 ~~~~~~~~~~~~~~d~~~~~  355 (466)
T COG2319         336 FSPDGSLLVSGGSDDGTIRL  355 (466)
T ss_pred             ECCCCCEEEEeecCCCcEEe
Confidence            94333555555577777776

>KOG2055|consensus

Probab=99.43  E-value=2.2e-12  Score=138.24  Aligned_cols=235  Identities=12%  Similarity=0.157  Sum_probs=168.5

Q ss_pred             ccceeeeeeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe
Q psy4578         581 DLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS  660 (860)
Q Consensus       581 D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~  660 (860)
                      .++....++.++.+++...   +..++......+..+.-...+|.+.+|.|++...+++++.......||+.+.+.. .+
T Consensus       220 ~FHp~~plllvaG~d~~lr---ifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-k~  295 (514)
T KOG2055|consen  220 QFHPTAPLLLVAGLDGTLR---IFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-KL  295 (514)
T ss_pred             EecCCCceEEEecCCCcEE---EEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc-cc
Confidence            3444444444454554433   3334444445555555566789999999965558999999999999999986542 33


Q ss_pred             eeccCCC-CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC
Q psy4578         661 HTVDAHT-AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  739 (860)
Q Consensus       661 ~~~~~h~-~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~  739 (860)
                      ....++. ..+.....++++++ ++..+..|.               |.+....++   ..+.+++ -.+.|..++|+.+
T Consensus       296 ~~~~g~e~~~~e~FeVShd~~f-ia~~G~~G~---------------I~lLhakT~---eli~s~K-ieG~v~~~~fsSd  355 (514)
T KOG2055|consen  296 KPPYGVEEKSMERFEVSHDSNF-IAIAGNNGH---------------IHLLHAKTK---ELITSFK-IEGVVSDFTFSSD  355 (514)
T ss_pred             cCCCCcccchhheeEecCCCCe-EEEcccCce---------------EEeehhhhh---hhhheee-eccEEeeEEEecC
Confidence            3344443 46778889999995 777778887               888888776   3444444 4678999999999


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC-CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578         740 SEYILATGSADKTVALWDLRNLKLKLHSFESHK-DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  818 (860)
Q Consensus       740 g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~-~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~  818 (860)
                      |.. |++++.+|.|.+||++...+ ++.+.... -.-++++.+++|.+ |++|+..|.|.|||.++...        +..
T Consensus       356 sk~-l~~~~~~GeV~v~nl~~~~~-~~rf~D~G~v~gts~~~S~ng~y-lA~GS~~GiVNIYd~~s~~~--------s~~  424 (514)
T KOG2055|consen  356 SKE-LLASGGTGEVYVWNLRQNSC-LHRFVDDGSVHGTSLCISLNGSY-LATGSDSGIVNIYDGNSCFA--------STN  424 (514)
T ss_pred             CcE-EEEEcCCceEEEEecCCcce-EEEEeecCccceeeeeecCCCce-EEeccCcceEEEeccchhhc--------cCC
Confidence            986 55666689999999999876 66666322 23466778899985 99999999999999776221        234


Q ss_pred             CccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578         819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       819 ~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D  851 (860)
                      ++++..+..-...|++++|++|++ ++|.+|..
T Consensus       425 PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~  456 (514)
T KOG2055|consen  425 PKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRV  456 (514)
T ss_pred             CCchhhhhhhheeeeeeeeCcchh-hhhhhhhc
Confidence            567777777788999999999999 56666543

>KOG1034|consensus

Probab=99.43  E-value=5.8e-13  Score=137.23  Aligned_cols=213  Identities=15%  Similarity=0.272  Sum_probs=154.3

Q ss_pred             hcccceeeeEeecc---CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         619 DKLRLLIDVAWHLL---HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       619 ~~~~~V~~v~~sp~---~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      ++......++|+-+   ++.++|.|+.-|.|+|.|+.++   +....+.+|.+.|+.+.++|+..+++++++.|.+    
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s----  159 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS----  159 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCce----
Confidence            35567888999753   3557889999999999999984   5567788999999999999999999999999999    


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee-----------
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-----------  764 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~-----------  764 (860)
                                 |++|++++..+.....-..+|...|.++.|+++|.+ +++|+.|.++++|++...+.+           
T Consensus       160 -----------vRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~-i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~  227 (385)
T KOG1034|consen  160 -----------VRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDR-IASCGMDHSLKLWRLNVKEFKNKLELSITYSP  227 (385)
T ss_pred             -----------EEEEeccCCeEEEEecccccccCcEEEEEEcCCCCe-eeccCCcceEEEEecChhHHhhhhhhhcccCC
Confidence                       999999998554444556789999999999999996 999999999999999733210           


Q ss_pred             ---------------e-EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc-cccccccCCCCccEEEecC
Q psy4578         765 ---------------L-HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGG  827 (860)
Q Consensus       765 ---------------~-~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~-~~~~~~~~~~~~~i~~~~~  827 (860)
                                     . .+-.-|...|-|+.|-  |++ +++-|-++.|..|.....+.. ..+. ........+..+.-
T Consensus       228 ~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~-ilSkscenaI~~w~pgkl~e~~~~vk-p~es~~Ti~~~~~~  303 (385)
T KOG1034|consen  228 NKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDF-ILSKSCENAIVCWKPGKLEESIHNVK-PPESATTILGEFDY  303 (385)
T ss_pred             CCccCcCCccccccccccccccccchHHHHHHH--hhh-eeecccCceEEEEecchhhhhhhccC-CCccceeeeeEecc
Confidence                           0 1223477788888886  564 778888999999987432221 1111 11122233444444


Q ss_pred             ccCceEEEE--EccCCCeEEEEEeCCCeEe
Q psy4578         828 HTAKISDFS--WNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       828 h~~~I~~i~--~spdg~~Llasgs~Dg~Ir  855 (860)
                      ....|+-+.  |+|-++. +|.|...|.|-
T Consensus       304 ~~c~iWfirf~~d~~~~~-la~gnq~g~v~  332 (385)
T KOG1034|consen  304 PMCDIWFIRFAFDPWQKM-LALGNQSGKVY  332 (385)
T ss_pred             CccceEEEEEeecHHHHH-HhhccCCCcEE
Confidence            455666654  4566664 55666666554

>KOG1524|consensus

Probab=99.41  E-value=4.2e-12  Score=137.78  Aligned_cols=186  Identities=17%  Similarity=0.249  Sum_probs=140.5

Q ss_pred             hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         614 ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      -...-.|.+.+.+-.|+| +|.-|++++.||.|++|.-..    ....++.....+|.|++|.|+...++.+.+..    
T Consensus        97 E~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSrsG----MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h----  167 (737)
T KOG1524|consen   97 ERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSRSG----MLRSTVVQNEESIRCARWAPNSNSIVFCQGGH----  167 (737)
T ss_pred             hhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEeccc----hHHHHHhhcCceeEEEEECCCCCceEEecCCe----
Confidence            344556778899999999 788889999999999998652    33445566788999999999999876665433    


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCC
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKD  773 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~  773 (860)
                                   +.|=.+...   ..+...++|.+-|.++.|++.++ ++++|+.|-..++||-....  +..-..|..
T Consensus       168 -------------~~IKpL~~n---~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~G~~--Lf~S~~~ey  228 (737)
T KOG1524|consen  168 -------------ISIKPLAAN---SKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQGAN--LFTSAAEEY  228 (737)
T ss_pred             -------------EEEeecccc---cceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeecccCcc--cccCChhcc
Confidence                         444444433   45556789999999999999998 69999999999999987654  566677999


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                      +|++++|+|+..  ++.++. +++++   ..                      ...+.|..++||+||.. +++|...|.
T Consensus       229 ~ITSva~npd~~--~~v~S~-nt~R~---~~----------------------p~~GSifnlsWS~DGTQ-~a~gt~~G~  279 (737)
T KOG1524|consen  229 AITSVAFNPEKD--YLLWSY-NTARF---SS----------------------PRVGSIFNLSWSADGTQ-ATCGTSTGQ  279 (737)
T ss_pred             ceeeeeeccccc--eeeeee-eeeee---cC----------------------CCccceEEEEEcCCCce-eeccccCce
Confidence            999999999943  445542 34441   11                      23578999999999996 556666665


Q ss_pred             Eee
Q psy4578         854 MQK  856 (860)
Q Consensus       854 IrI  856 (860)
                      +.+
T Consensus       280 v~~  282 (737)
T KOG1524|consen  280 LIV  282 (737)
T ss_pred             EEE
Confidence            544

>KOG1007|consensus

Probab=99.41  E-value=2.8e-12  Score=130.01  Aligned_cols=164  Identities=27%  Similarity=0.467  Sum_probs=135.8

Q ss_pred             ccceeeeEeec-cCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         621 LRLLIDVAWHL-LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       621 ~~~V~~v~~sp-~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      ....++-+|+| -+++.+++. .|+++..||+++...  ....-..|...|..+.|+|+.++++++|++||.        
T Consensus       170 ~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~--~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy--------  238 (370)
T KOG1007|consen  170 RHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK--NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY--------  238 (370)
T ss_pred             cceecccccCCCCccceEEEe-CCCcEEEEEccchhh--hcchhhhhcceeeeccCCCCceEEEEEcCCCcc--------
Confidence            45678889999 456666654 579999999997432  233345788999999999999999999999998        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce----------------
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL----------------  763 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~----------------  763 (860)
                             |++||.+..+  .++..+.+|.-.|.++.|+|....++.+|+.|..|.+|....-..                
T Consensus       239 -------vriWD~R~tk--~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~  309 (370)
T KOG1007|consen  239 -------VRIWDTRKTK--FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDE  309 (370)
T ss_pred             -------EEEEeccCCC--ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcch
Confidence                   9999999763  678899999999999999999888999999999999996532210                


Q ss_pred             ------------eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         764 ------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       764 ------------~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                                  .+.++..|...|++++|+.-.++++++-+.||++.|=.+..
T Consensus       310 dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  310 DSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             hhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence                        14467779999999999999999999999999999876654

>KOG2139|consensus

Probab=99.41  E-value=9.3e-12  Score=129.81  Aligned_cols=195  Identities=20%  Similarity=0.365  Sum_probs=140.9

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      ..+..++|++ .-..++++..|-.|++||-.+. ....++  ......|+|++|-|.+...+++|+..|           
T Consensus        99 ~dlr~~aWhq-H~~~fava~nddvVriy~ksst-~pt~Lk--s~sQrnvtclawRPlsaselavgCr~g-----------  163 (445)
T KOG2139|consen   99 IDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSST-CPTKLK--SVSQRNVTCLAWRPLSASELAVGCRAG-----------  163 (445)
T ss_pred             cceeeEeech-hhhhhhhhccCcEEEEeccCCC-CCceec--chhhcceeEEEeccCCcceeeeeecce-----------
Confidence            4688999997 6666889999999999998762 112222  223568999999999888899999988           


Q ss_pred             cCCCcEEEEeCCCCC-C----------CCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC-CCcEEEEeCCCCceeeEEec
Q psy4578         702 NYDQKLMIWDTRSHN-V----------SKPSHTVDAHTAEVNCLSFNPYSEYILATGSA-DKTVALWDLRNLKLKLHSFE  769 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~-~----------~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~-Dg~I~IWDl~~~~~~~~~~~  769 (860)
                           |.+|...... .          ...+....+| ..|+++.|+++|.. +++++. |..|+|||..++.. +....
T Consensus       164 -----IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~-l~tAS~gsssi~iWdpdtg~~-~pL~~  235 (445)
T KOG2139|consen  164 -----ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTI-LVTASFGSSSIMIWDPDTGQK-IPLIP  235 (445)
T ss_pred             -----eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCE-EeecccCcceEEEEcCCCCCc-ccccc
Confidence                 7788654311 0          1123334455 68999999999995 777765 67899999998875 22222


Q ss_pred             cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       770 ~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      ...+.++-+.|||||.+ |++++-|+..++|+.........+            .  --.+.|...+|+|+|++|+.+++
T Consensus       236 ~glgg~slLkwSPdgd~-lfaAt~davfrlw~e~q~wt~erw------------~--lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  236 KGLGGFSLLKWSPDGDV-LFAATCDAVFRLWQENQSWTKERW------------I--LGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             cCCCceeeEEEcCCCCE-EEEecccceeeeehhcccceecce------------e--ccCCceeeeeecCCCCEEEEEEc
Confidence            34567888999999997 678888999999965442211110            0  12348999999999999998888


Q ss_pred             CCCeE
Q psy4578         850 EDNIM  854 (860)
Q Consensus       850 ~Dg~I  854 (860)
                      ..-.+
T Consensus       301 gsp~l  305 (445)
T KOG2139|consen  301 GSPRL  305 (445)
T ss_pred             CCceE
Confidence            77654

>KOG1009|consensus

Probab=99.40  E-value=6.2e-12  Score=133.08  Aligned_cols=125  Identities=20%  Similarity=0.401  Sum_probs=103.3

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcC--------C-----CCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTR--------S-----HNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~--------~-----~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      ..+..|...|++|.|+| +++++|+|+.+|.|.+|...        +     .+.+.....+.+|...|..++|+|++.+
T Consensus        59 s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~  137 (434)
T KOG1009|consen   59 SSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF  137 (434)
T ss_pred             ecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence            34557788999999999 89999999999999999876        2     2223344566789999999999999995


Q ss_pred             EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578         682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN  760 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~  760 (860)
                       +++|+.|.+               +++||+..+   .....+..|...+..++|.|-+++ +++-+.|...+.+++..
T Consensus       138 -l~s~s~dns---------------~~l~Dv~~G---~l~~~~~dh~~yvqgvawDpl~qy-v~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  138 -LVSGSVDNS---------------VRLWDVHAG---QLLAILDDHEHYVQGVAWDPLNQY-VASKSSDRHPEGFSAKL  196 (434)
T ss_pred             -eeeeeccce---------------EEEEEeccc---eeEeeccccccccceeecchhhhh-hhhhccCcccceeeeee
Confidence             899999998               999999987   667778889999999999999887 77878887666666543

>KOG2139|consensus

Probab=99.38  E-value=4.4e-11  Score=124.82  Aligned_cols=245  Identities=16%  Similarity=0.212  Sum_probs=149.0

Q ss_pred             cccccceeeeeeecceeecccceeEEEEeeccchhhhhhhh-hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc
Q psy4578         578 TQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLL-DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV  656 (860)
Q Consensus       578 ~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~-~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~  656 (860)
                      +.+-..+.|+..-..+..+.++...-+|..+  ......+. .....|+|++|-|.....|+.|+.. -|.+|.......
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ks--st~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln  174 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKS--STCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN  174 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccC--CCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence            3334445555543344444444333333333  32222222 2235799999999988999998875 589998753211


Q ss_pred             -cc----------CeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeec
Q psy4578         657 -SK----------PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD  725 (860)
Q Consensus       657 -~~----------~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~  725 (860)
                       .+          .+..-.+| .+|+++.|++||.. +++++.+..              .|.|||..++... ++.  .
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~-l~tAS~gss--------------si~iWdpdtg~~~-pL~--~  235 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTI-LVTASFGSS--------------SIMIWDPDTGQKI-PLI--P  235 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcCCCCE-EeecccCcc--------------eEEEEcCCCCCcc-ccc--c
Confidence             11          11222344 68999999999985 666664432              3999999987542 222  2


Q ss_pred             CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578         726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       726 ~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~  805 (860)
                      ...+.++-+.|||+|.+ +.+++-|+..++|+....-. ...+....+.|...+|+|+|+++|++++..-.++-..... 
T Consensus       236 ~glgg~slLkwSPdgd~-lfaAt~davfrlw~e~q~wt-~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~-  312 (445)
T KOG2139|consen  236 KGLGGFSLLKWSPDGDV-LFAATCDAVFRLWQENQSWT-KERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDG-  312 (445)
T ss_pred             cCCCceeeEEEcCCCCE-EEEecccceeeeehhcccce-ecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecC-
Confidence            34577889999999996 77788899999996543322 1223334568999999999999888887665554433332 


Q ss_pred             CcccccccccCCCCc--cE------EEec---CccCceEEEEEccCCCeEEEEEe
Q psy4578         806 GEEQSTEDAEDGPPE--LL------FIHG---GHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       806 ~~~~~~~~~~~~~~~--~i------~~~~---~h~~~I~~i~~spdg~~Llasgs  849 (860)
                       ........ .+...  ++      ....   --.+.+.+++|+|.|.|++++--
T Consensus       313 -~~~~~~~~-~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  313 -EDSVFLRP-QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             -CCccccCc-ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence             22111100 00000  00      0111   12567899999999999776543

>KOG1240|consensus

Probab=99.37  E-value=1.5e-11  Score=144.94  Aligned_cols=202  Identities=19%  Similarity=0.302  Sum_probs=150.2

Q ss_pred             eccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCC----CcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         607 ENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH----NVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       607 ~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~----~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      |+.++.-+.++..|...|..++.++..+.+|+|||.||+|++||...-    ...+...++......+.++..++.++. 
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~- 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ- 1112 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe-
Confidence            677777788888999999999999877799999999999999998742    223344455546788999999999986 


Q ss_pred             EEEEeCCCceeeecccccc--------------------------------------cCCCcEEEEeCCCCCCCCCeeee
Q psy4578         683 LATGSADKTQFEVEEEEEE--------------------------------------NYDQKLMIWDTRSHNVSKPSHTV  724 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~--------------------------------------~~dg~I~iwDl~~~~~~~~~~~~  724 (860)
                      +|+|+.||.|.+.+.+...                                      ...+.|..||+++...... ...
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~-lk~ 1191 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR-LKN 1191 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh-hhc
Confidence            8888999999888777620                                      1134577888887532111 122


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec-cCCCceEEEEEcCCCC--CEEEEEE--CCCcEEE
Q psy4578         725 DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNE--TILASSG--TDRRLHV  799 (860)
Q Consensus       725 ~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~-~h~~~V~~l~fsp~g~--~lL~tgs--~Dg~I~i  799 (860)
                      ....+.|++++.+|.+.+ ++.|+..|.+.+||+|-... +..+. ++..+++.+..+|..+  ...+++|  ..+-|.+
T Consensus      1192 ~~~hG~vTSi~idp~~~W-lviGts~G~l~lWDLRF~~~-i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNW-LVIGTSRGQLVLWDLRFRVP-ILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred             CccccceeEEEecCCceE-EEEecCCceEEEEEeecCce-eecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence            334578999999999995 99999999999999998775 44443 4557888888777543  2344444  5688999


Q ss_pred             EECCCCCcccccc
Q psy4578         800 WDLSKIGEEQSTE  812 (860)
Q Consensus       800 Wdl~~~~~~~~~~  812 (860)
                      |++.++.+...+.
T Consensus      1270 wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLW 1282 (1431)
T ss_pred             eecccCcceEEEE
Confidence            9999986655443

>KOG4227|consensus

Probab=99.37  E-value=3.1e-11  Score=126.48  Aligned_cols=237  Identities=14%  Similarity=0.212  Sum_probs=168.5

Q ss_pred             hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCC---CcccCeeec-cCCCCCeeEEEEccCCCeEEEEEeCC
Q psy4578         614 ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH---NVSKPSHTV-DAHTAEVNCLSFNPYSEYILATGSAD  689 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~---~~~~~~~~~-~~h~~~V~~l~~sp~g~~llasgs~D  689 (860)
                      ...+.+|.+.|+++.|+. ++.+|++|+.|..+++|++...   +..+++... ..|...|.|++|+..+. .+.+|+.+
T Consensus        49 qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~  126 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERW  126 (609)
T ss_pred             hhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCc
Confidence            345678999999999996 7999999999999999998632   122444433 33568999999998666 58999999


Q ss_pred             Cceeeeccccc-----------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCC
Q psy4578         690 KTQFEVEEEEE-----------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS  740 (860)
Q Consensus       690 g~i~~~~~~~~-----------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g  740 (860)
                      ++|...+....                             ...++.|.+||++...................++.|+|..
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            99877665543                             1346778999998764323333344456678899999999


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCcee-------------------------------------------------eEEeccC
Q psy4578         741 EYILATGSADKTVALWDLRNLKLK-------------------------------------------------LHSFESH  771 (860)
Q Consensus       741 ~~llasgs~Dg~I~IWDl~~~~~~-------------------------------------------------~~~~~~h  771 (860)
                      ..+|++++..|.+.+||.+....+                                                 +..+. |
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~  285 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-H  285 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-C
Confidence            989999999999999998743221                                                 00111 1


Q ss_pred             C-------CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc---cccccC------CCCccEEEecCccCceEEE
Q psy4578         772 K-------DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS---TEDAED------GPPELLFIHGGHTAKISDF  835 (860)
Q Consensus       772 ~-------~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~---~~~~~~------~~~~~i~~~~~h~~~I~~i  835 (860)
                      .       ..+.+++|..+..  +++|+.+-.|++|.+.......-   +.....      -....+..+.||.+-+..+
T Consensus       286 N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV  363 (609)
T KOG4227|consen  286 NPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV  363 (609)
T ss_pred             CCCcceeeeeeeeeeeeccee--eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence            1       1355666765543  78999999999999876433222   111011      1123456778999999999


Q ss_pred             EEccCCCeEEEEEeCCCeEee
Q psy4578         836 SWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       836 ~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .|+|... ++++.+-.++++|
T Consensus       364 RF~~H~~-~l~SSGVE~~~Kl  383 (609)
T KOG4227|consen  364 RFSQHNN-LLVSSGVENSFKL  383 (609)
T ss_pred             eecCCcc-eEeccchhhheec
Confidence            9999866 7888888888886

>KOG0322|consensus

Probab=99.37  E-value=4.2e-12  Score=127.43  Aligned_cols=214  Identities=17%  Similarity=0.240  Sum_probs=152.3

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-CCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      .|.+.|+++.|..  +..|.+|..-|.|++|++.+.   +....+. .+...|+.+.--|++.  +.+-+.|+.+..|..
T Consensus        12 p~~~~v~s~~fqa--~~rL~sg~~~G~V~~w~lqt~---r~~~~~r~~g~~~it~lq~~p~d~--l~tqgRd~~L~lw~i   84 (323)
T KOG0322|consen   12 PHSSSVTSVLFQA--NERLMSGLSVGIVKMWVLQTE---RDLPLIRLFGRLFITNLQSIPNDS--LDTQGRDPLLILWTI   84 (323)
T ss_pred             cccchheehhhcc--chhhhcccccceEEEEEeecC---ccchhhhhhccceeeceeecCCcc--hhhcCCCceEEEEEc
Confidence            7788999999985  455899999999999999874   3333333 3344555555555432  344444444444433


Q ss_pred             ccc-----------------------------------------------------------------------------
Q psy4578         698 EEE-----------------------------------------------------------------------------  700 (860)
Q Consensus       698 ~~~-----------------------------------------------------------------------------  700 (860)
                      ..+                                                                             
T Consensus        85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s  164 (323)
T KOG0322|consen   85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS  164 (323)
T ss_pred             cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence            220                                                                             


Q ss_pred             ------ccCCCcEEEEeCCCCC-------CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCC--ceee
Q psy4578         701 ------ENYDQKLMIWDTRSHN-------VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL--KLKL  765 (860)
Q Consensus       701 ------~~~dg~I~iwDl~~~~-------~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~--~~~~  765 (860)
                            +..+|.+.+||+.++.       ..+.......|..+|.++.+.+.-.. =++|+.+..+..|.++..  ...+
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-CcCCCccccceeeeeccccCcccc
Confidence                  2357889999998852       22334455679999999999875443 457788888889988654  2211


Q ss_pred             E-EeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeE
Q psy4578         766 H-SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWV  844 (860)
Q Consensus       766 ~-~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~L  844 (860)
                      . ...-.+-.|..+..-||++ +++|+|.||+||+|+.++              ..++..+..|.+.|.+++|+|+.+ +
T Consensus       244 ~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrt--------------l~pLAVLkyHsagvn~vAfspd~~-l  307 (323)
T KOG0322|consen  244 RKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRT--------------LNPLAVLKYHSAGVNAVAFSPDCE-L  307 (323)
T ss_pred             cceEEecCCCccceEEccCCc-EEeecccCCcEEEEEecc--------------CCchhhhhhhhcceeEEEeCCCCc-h
Confidence            1 1222345688899999998 799999999999999998              345677788999999999999988 7


Q ss_pred             EEEEeCCCeEee
Q psy4578         845 ICSVSEDNIMQK  856 (860)
Q Consensus       845 lasgs~Dg~IrI  856 (860)
                      +|++|.|+.|.+
T Consensus       308 mAaaskD~rISL  319 (323)
T KOG0322|consen  308 MAAASKDARISL  319 (323)
T ss_pred             hhhccCCceEEe
Confidence            999999998764

>KOG1524|consensus

Probab=99.37  E-value=8.2e-12  Score=135.54  Aligned_cols=172  Identities=20%  Similarity=0.388  Sum_probs=135.5

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR  713 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~  713 (860)
                      ...|+.++.||.+.+.+-..    +.-..+..|.+.+.|-.|+|+|.- +++.+.||.               |++|.-.
T Consensus        75 ~d~~~i~s~DGkf~il~k~~----rVE~sv~AH~~A~~~gRW~~dGtg-Llt~GEDG~---------------iKiWSrs  134 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSA----RVERSISAHAAAISSGRWSPDGAG-LLTAGEDGV---------------IKIWSRS  134 (737)
T ss_pred             cceEEEEcCCceEEEecccc----hhhhhhhhhhhhhhhcccCCCCce-eeeecCCce---------------EEEEecc
Confidence            45688899999999987643    445667889999999999999996 788889998               9999754


Q ss_pred             CCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC
Q psy4578         714 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT  793 (860)
Q Consensus       714 ~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~  793 (860)
                      .    ....++......|+|++|.|+++.++.+.+  +.+.|=-+..... +..+.+|.+-|.++.|++..+ ++++||.
T Consensus       135 G----MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~-lI~sgGE  206 (737)
T KOG1524|consen  135 G----MLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSN-IIASGGE  206 (737)
T ss_pred             c----hHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccc-eeEEeccCcEEEEeecCcccc-ceeecCC
Confidence            3    222334445678999999999998776654  4565555554444 677899999999999999998 5999999


Q ss_pred             CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578         794 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       794 Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~  850 (860)
                      |-..++||-..               ..++....|.-+|++++|+|+..  ++.+|.
T Consensus       207 D~kfKvWD~~G---------------~~Lf~S~~~ey~ITSva~npd~~--~~v~S~  246 (737)
T KOG1524|consen  207 DFRFKIWDAQG---------------ANLFTSAAEEYAITSVAFNPEKD--YLLWSY  246 (737)
T ss_pred             ceeEEeecccC---------------cccccCChhccceeeeeeccccc--eeeeee
Confidence            99999999664               45666678999999999999944  444554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.36  E-value=1.6e-10  Score=128.49  Aligned_cols=196  Identities=31%  Similarity=0.564  Sum_probs=150.8

Q ss_pred             ceeeeEe-eccCCcEEEEEeC-CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeC-CCceeeecccc
Q psy4578         623 LLIDVAW-HLLHESLFGSVAD-DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA-DKTQFEVEEEE  699 (860)
Q Consensus       623 ~V~~v~~-sp~~~~~lasgs~-DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~-Dg~i~~~~~~~  699 (860)
                      .+..+.+ ++.....++.++. |+.+.+|+....  ......+..|...|.+++|+|++.. +++++. |+.        
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~--------  179 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP--GKLIRTLEGHSESVTSLAFSPDGKL-LASGSSLDGT--------  179 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCC--CeEEEEEecCcccEEEEEECCCCCE-EEecCCCCCc--------
Confidence            6777777 6533325555444 999999999861  2445677789999999999999985 666664 887        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeE-EeccCCCceEEE
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH-SFESHKDEIFQV  778 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~-~~~~h~~~V~~l  778 (860)
                             +++|+....   ..+..+.+|...|.+++|+|++..++++++.|+.|++||...+.. .. .+.+|...+ ..
T Consensus       180 -------~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~-~~  247 (466)
T COG2319         180 -------IKLWDLRTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL-LRSTLSGHSDSV-VS  247 (466)
T ss_pred             -------eEEEEcCCC---ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE-EeeecCCCCcce-eE
Confidence                   999999874   666777789999999999999985466669999999999886665 44 577888775 44


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .|+|++. ++++++.|+.+++|+......             ......+|...|.++.|+|++..+++ ++.|+.+++
T Consensus       248 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~~~~~  310 (466)
T COG2319         248 SFSPDGS-LLASGSSDGTIRLWDLRSSSS-------------LLRTLSGHSSSVLSVAFSPDGKLLAS-GSSDGTVRL  310 (466)
T ss_pred             eECCCCC-EEEEecCCCcEEEeeecCCCc-------------EEEEEecCCccEEEEEECCCCCEEEE-eeCCCcEEE
Confidence            8999995 477999999999999987433             12222577899999999998886665 777776554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=7e-11  Score=135.72  Aligned_cols=210  Identities=16%  Similarity=0.144  Sum_probs=133.2

Q ss_pred             EEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCC---CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578         602 EVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADD---QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  678 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~D---G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~  678 (860)
                      ..+++++........+..+...+.+.+|+| +++.++.++.+   ..|.+||+.++.. ..+..+.+   ...+++|+||
T Consensus       184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g---~~~~~~wSPD  258 (429)
T PRK01742        184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRG---HNGAPAFSPD  258 (429)
T ss_pred             EEEEEECCCCCCceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCC---ccCceeECCC
Confidence            446666665555555566677899999999 56666665543   3699999987532 22333333   3457899999


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL  758 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl  758 (860)
                      |+.++.+.+.+|.             -.|.+||+.++    ....+..+...+.+..|+|+|+.+++++..+|...||++
T Consensus       259 G~~La~~~~~~g~-------------~~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~  321 (429)
T PRK01742        259 GSRLAFASSKDGV-------------LNIYVMGANGG----TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRM  321 (429)
T ss_pred             CCEEEEEEecCCc-------------EEEEEEECCCC----CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEE
Confidence            9986666666775             11444566553    234455667778899999999986667667888899987


Q ss_pred             CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc
Q psy4578         759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN  838 (860)
Q Consensus       759 ~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s  838 (860)
                      +......... .+..  .+..|+|+|++ ++.++.++ +.+||+.++.....              ...+  ...+..|+
T Consensus       322 ~~~~~~~~~l-~~~~--~~~~~SpDG~~-ia~~~~~~-i~~~Dl~~g~~~~l--------------t~~~--~~~~~~~s  380 (429)
T PRK01742        322 SASGGGASLV-GGRG--YSAQISADGKT-LVMINGDN-VVKQDLTSGSTEVL--------------SSTF--LDESPSIS  380 (429)
T ss_pred             ECCCCCeEEe-cCCC--CCccCCCCCCE-EEEEcCCC-EEEEECCCCCeEEe--------------cCCC--CCCCceEC
Confidence            5433212223 3333  45789999997 55555554 66699877432110              0011  12457899


Q ss_pred             cCCCeEEEEEeCCCeEe
Q psy4578         839 PNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       839 pdg~~Llasgs~Dg~Ir  855 (860)
                      |||++++++ +.++...
T Consensus       381 PdG~~i~~~-s~~g~~~  396 (429)
T PRK01742        381 PNGIMIIYS-STQGLGK  396 (429)
T ss_pred             CCCCEEEEE-EcCCCce
Confidence            999975544 4455443

>KOG1310|consensus

Probab=99.35  E-value=3.2e-12  Score=139.00  Aligned_cols=173  Identities=25%  Similarity=0.458  Sum_probs=134.3

Q ss_pred             eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCee-eecCCCCCeEEEEEcCC
Q psy4578         661 HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH-TVDAHTAEVNCLSFNPY  739 (860)
Q Consensus       661 ~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~-~~~~h~~~I~sl~~sp~  739 (860)
                      ..+.||.+.|.|+.|+.+|. +|++|++|-.               +.|||....   +.+. .-.+|++.|.|+.|-|.
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r---------------~ivWd~~~~---KllhsI~TgHtaNIFsvKFvP~  104 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGE-LLASGSDDTR---------------LIVWDPFEY---KLLHSISTGHTANIFSVKFVPY  104 (758)
T ss_pred             hhhccccceecceeecCCCC-EEeecCCcce---------------EEeecchhc---ceeeeeecccccceeEEeeecc
Confidence            45679999999999999999 6999999988               999999865   3333 33689999999999983


Q ss_pred             -CCcEEEEeeCCCcEEEEeCCCC---------ceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578         740 -SEYILATGSADKTVALWDLRNL---------KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  809 (860)
Q Consensus       740 -g~~llasgs~Dg~I~IWDl~~~---------~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~  809 (860)
                       +..++++|..|..|++||+...         ......+..|...|..++-.|+++..+.+++.||+|+-+|++......
T Consensus       105 tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~  184 (758)
T KOG1310|consen  105 TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN  184 (758)
T ss_pred             CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC
Confidence             4457999999999999999852         233566788999999999999998889999999999999999743322


Q ss_pred             ccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         810 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       810 ~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ...   +. ...+......--...+++.+|..++.++.|+.|-..++
T Consensus       185 p~~---~~-~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarL  227 (758)
T KOG1310|consen  185 PDE---DC-PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARL  227 (758)
T ss_pred             ccc---cc-cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhh
Confidence            111   11 11122222223456789999999999999998876654

>KOG0644|consensus

Probab=99.34  E-value=1.4e-12  Score=147.63  Aligned_cols=213  Identities=18%  Similarity=0.310  Sum_probs=151.2

Q ss_pred             hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578         613 QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ  692 (860)
Q Consensus       613 ~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i  692 (860)
                      .+..+.+|...|+|+.|.. .+.++++|+.|..++||...+   ..+.....||.+.++.++.+..+. ++++++.|.. 
T Consensus       182 ~ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et---~~~lAs~rGhs~ditdlavs~~n~-~iaaaS~D~v-  255 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMET---ARCLASCRGHSGDITDLAVSSNNT-MIAAASNDKV-  255 (1113)
T ss_pred             HHHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccc---hhhhccCCCCccccchhccchhhh-hhhhcccCce-
Confidence            3566788999999999996 899999999999999999888   466788899999999999988665 6899999998 


Q ss_pred             eeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeE-----E
Q psy4578         693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH-----S  767 (860)
Q Consensus       693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~-----~  767 (860)
                                    |++|.+..+   .++..+.+|++.|++++|+|-.     +.+.||++++||.+-... ..     .
T Consensus       256 --------------IrvWrl~~~---~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~-~y~prp~~  312 (1113)
T KOG0644|consen  256 --------------IRVWRLPDG---APVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPR-IYVPRPLK  312 (1113)
T ss_pred             --------------EEEEecCCC---chHHHHhccccceeeeccCccc-----cCCCCCceEecccccccc-ccCCCCCC
Confidence                          999999987   7788899999999999999943     678899999999982111 00     0


Q ss_pred             eccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc-----ccc------------------ccCCCCccEEE
Q psy4578         768 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS-----TED------------------AEDGPPELLFI  824 (860)
Q Consensus       768 ~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~-----~~~------------------~~~~~~~~i~~  824 (860)
                      +. ....+.++.|...+.. ++||+.|+.-..|.+........     ...                  -+...+.+.+.
T Consensus       313 ~~-~~~~~~s~~~~~~~~~-f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~  390 (1113)
T KOG0644|consen  313 FT-EKDLVDSILFENNGDR-FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN  390 (1113)
T ss_pred             cc-cccceeeeeccccccc-cccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhh
Confidence            11 1123334444444433 34444444444443221100000     000                  00011344556


Q ss_pred             ecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         825 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       825 ~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ..+|...+..+.++|-...+.-+++.||...|
T Consensus       391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~i  422 (1113)
T KOG0644|consen  391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTII  422 (1113)
T ss_pred             hcccccceeeeeecCCCcHhhhhccCCCceEe
Confidence            67899999999999988878888888887654

>KOG1517|consensus

Probab=99.34  E-value=2e-11  Score=141.70  Aligned_cols=246  Identities=16%  Similarity=0.188  Sum_probs=169.6

Q ss_pred             ceeEEEEeeccchhhhhhhhhcc----cceeeeEeec-cCCcEEEEEeCCCcEEEEEcCCC--CcccCeeecc-------
Q psy4578         599 HIEEVMYLENKTRAQICQLLDKL----RLLIDVAWHL-LHESLFGSVADDQKLMIWDTRSH--NVSKPSHTVD-------  664 (860)
Q Consensus       599 ~l~~il~l~n~~~~~l~~l~~~~----~~V~~v~~sp-~~~~~lasgs~DG~I~IWd~~~~--~~~~~~~~~~-------  664 (860)
                      +....+.+|+.+......-+...    ..|+++++-. ++..++++|+.||.|+||+-...  +..+.+....       
T Consensus      1083 d~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~ 1162 (1387)
T KOG1517|consen 1083 DDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLP 1162 (1387)
T ss_pred             CCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCc
Confidence            33556667777777766666543    5699999853 45678999999999999975432  1122222211       


Q ss_pred             CCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc-----------------------------ccCCCcEEEEeCCCC
Q psy4578         665 AHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE-----------------------------ENYDQKLMIWDTRSH  715 (860)
Q Consensus       665 ~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~-----------------------------~~~dg~I~iwDl~~~  715 (860)
                      +-.+.-.-+.|.....+++++| .-..|++|+...+                             |..||.|++||.+..
T Consensus      1163 ~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1163 GARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred             cCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccC
Confidence            1112224577888777755555 4778899987654                             356999999999987


Q ss_pred             CCCCCeeeecCCCCC--eEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc-eeeEEeccCC---CceEEEEEcCCCCCEEE
Q psy4578         716 NVSKPSHTVDAHTAE--VNCLSFNPYSEYILATGSADKTVALWDLRNLK-LKLHSFESHK---DEIFQVQWSPHNETILA  789 (860)
Q Consensus       716 ~~~~~~~~~~~h~~~--I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~-~~~~~~~~h~---~~V~~l~fsp~g~~lL~  789 (860)
                      .....+...+.|...  |..+.+.++|-.-+++|+.||.|++||+|... ........|.   +.++++..+++.+ +++
T Consensus      1242 ~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiA 1320 (1387)
T KOG1517|consen 1242 PPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIA 1320 (1387)
T ss_pred             CccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eee
Confidence            554567777888887  99999998776458999999999999999842 2122223332   3599999999998 588


Q ss_pred             EEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         790 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       790 tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|+. +.|+||++.... ...+...    +.   ......+.+.+++|||..- ++|+|+.|.+|.|
T Consensus      1321 sGs~-q~ikIy~~~G~~-l~~~k~n----~~---F~~q~~gs~scL~FHP~~~-llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1321 SGSA-QLIKIYSLSGEQ-LNIIKYN----PG---FMGQRIGSVSCLAFHPHRL-LLAAGSADSTVSI 1377 (1387)
T ss_pred             ecCc-ceEEEEecChhh-hcccccC----cc---cccCcCCCcceeeecchhH-hhhhccCCceEEE
Confidence            8877 999999987532 2222110    11   1122345679999999876 6888899999987

>KOG0649|consensus

Probab=99.34  E-value=2.3e-11  Score=120.67  Aligned_cols=179  Identities=17%  Similarity=0.216  Sum_probs=131.4

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCC-------CcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH-------NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~-------~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      +..|.+-+|+| .+.+|++|..+|.|.++.+.+.       .....+...++|.+++..++|.  .+ ++++|+. |.|+
T Consensus        10 ~~tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~-~Lls~gd-G~V~   84 (325)
T KOG0649|consen   10 YNTVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DD-FLLSGGD-GLVY   84 (325)
T ss_pred             HHHHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hh-heeeccC-ceEE
Confidence            44677778998 7889999999999999998641       1123455668999999999998  34 4666654 8866


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCC
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKD  773 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~  773 (860)
                      -|.........+.=++|.+..+..     .-...-..|+++-..|..+.++ .++.|+.++-||+++++. ...+.+|+.
T Consensus        85 gw~W~E~~es~~~K~lwe~~~P~~-----~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i-~r~~rGHtD  157 (325)
T KOG0649|consen   85 GWEWNEEEESLATKRLWEVKIPMQ-----VDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRI-QREYRGHTD  157 (325)
T ss_pred             EeeehhhhhhccchhhhhhcCccc-----cCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEE-EEEEcCCcc
Confidence            666555544444445565543311     1011235689999999888744 555899999999999997 788999999


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccc
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  812 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~  812 (860)
                      .|.++.--..... +++|+.||++++||.++.++.+.+.
T Consensus       158 YvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  158 YVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             eeeeeeecccCcc-eeecCCCccEEEEeccccceeEEec
Confidence            9999988443334 6799999999999999988766554

>KOG2110|consensus

Probab=99.33  E-value=3.4e-10  Score=118.94  Aligned_cols=196  Identities=16%  Similarity=0.266  Sum_probs=142.0

Q ss_pred             cccceeeeEeeccCCcEEEEEeCC--CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADD--QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~D--G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      ....|.-+-|+.   .++|..+.+  ..+++.+...+   ..++.+ .....|.++.++.+  . ++++-.+.       
T Consensus        45 ~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~---~~ICe~-~fpt~IL~VrmNr~--R-LvV~Lee~-------  107 (391)
T KOG2110|consen   45 EGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKK---TTICEI-FFPTSILAVRMNRK--R-LVVCLEES-------  107 (391)
T ss_pred             CCeEEEEeeccc---ceeEEEecCCCceEEEEEcccC---ceEEEE-ecCCceEEEEEccc--e-EEEEEccc-------
Confidence            334577777874   455554443  35888888763   223332 34678899998752  2 45554433       


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC-CCcEEEEeCCCCceeeEEeccCCCceE
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA-DKTVALWDLRNLKLKLHSFESHKDEIF  776 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~-Dg~I~IWDl~~~~~~~~~~~~h~~~V~  776 (860)
                               |.|||+++.+....+.+...+...+.++..++.+.++..-++. .|.|.+||+.+.+. +..+.+|.+.+-
T Consensus       108 ---------IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~-v~~I~aH~~~lA  177 (391)
T KOG2110|consen  108 ---------IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP-VNTINAHKGPLA  177 (391)
T ss_pred             ---------EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee-eeEEEecCCcee
Confidence                     9999999875545555555567778888888877774444443 58999999999886 888899999999


Q ss_pred             EEEEcCCCCCEEEEEECCCc-EEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         777 QVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~-I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      +++|+++|. +|||++..|+ |||+.+.+++...++...            .....|.+++|+|++++ +++.|+.++|+
T Consensus       178 alafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG------------~~~~~IySL~Fs~ds~~-L~~sS~TeTVH  243 (391)
T KOG2110|consen  178 ALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRG------------TYPVSIYSLSFSPDSQF-LAASSNTETVH  243 (391)
T ss_pred             EEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCC------------ceeeEEEEEEECCCCCe-EEEecCCCeEE
Confidence            999999998 6999999887 789999887665544321            12456899999999995 77888888888


Q ss_pred             e
Q psy4578         856 K  856 (860)
Q Consensus       856 I  856 (860)
                      |
T Consensus       244 i  244 (391)
T KOG2110|consen  244 I  244 (391)
T ss_pred             E
Confidence            6

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=1.2e-10  Score=133.59  Aligned_cols=209  Identities=12%  Similarity=0.120  Sum_probs=131.9

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeC-C--CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVAD-D--QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~-D--G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  679 (860)
                      -+++++........+..+...+.+.+|+| +++.++.++. +  ..|.+||+.++..    ..+....+.+.+.+|+|||
T Consensus       177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~----~~l~~~~g~~~~~~~SPDG  251 (427)
T PRK02889        177 QLQISDADGQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRR----RVVANFKGSNSAPAWSPDG  251 (427)
T ss_pred             EEEEECCCCCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCE----EEeecCCCCccceEECCCC
Confidence            35555555555555666777899999999 5666665543 2  3599999987532    2222334566789999999


Q ss_pred             CeEEEEEeCCCceeeecccccccCCCcEEEE--eCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578         680 EYILATGSADKTQFEVEEEEEENYDQKLMIW--DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD  757 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iw--Dl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD  757 (860)
                      +.++++.+.+|.               ..+|  |+.++    ....+..+.+...+..|+|+|+++++++..+|...||.
T Consensus       252 ~~la~~~~~~g~---------------~~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~  312 (427)
T PRK02889        252 RTLAVALSRDGN---------------SQIYTVNADGS----GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYR  312 (427)
T ss_pred             CEEEEEEccCCC---------------ceEEEEECCCC----CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEE
Confidence            987777777775               4555  44433    23344445555677899999998666655567777775


Q ss_pred             C--CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCC--cEEEEECCCCCcccccccccCCCCccEEEecCccCceE
Q psy4578         758 L--RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS  833 (860)
Q Consensus       758 l--~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg--~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~  833 (860)
                      +  .++..  .....+.......+|+|+|+++++++..++  .|.+||+.++.....               .. .....
T Consensus       313 ~~~~~g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l---------------t~-~~~~~  374 (427)
T PRK02889        313 MPASGGAA--QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL---------------TD-TTRDE  374 (427)
T ss_pred             EECCCCce--EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc---------------cC-CCCcc
Confidence            5  34432  222222233446789999997544443333  699999887432111               11 11235


Q ss_pred             EEEEccCCCeEEEEEeCCCe
Q psy4578         834 DFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       834 ~i~~spdg~~Llasgs~Dg~  853 (860)
                      ...|+|||+.++++...+|.
T Consensus       375 ~p~~spdg~~l~~~~~~~g~  394 (427)
T PRK02889        375 SPSFAPNGRYILYATQQGGR  394 (427)
T ss_pred             CceECCCCCEEEEEEecCCC
Confidence            67899999987777766554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=1.8e-10  Score=132.68  Aligned_cols=210  Identities=13%  Similarity=0.163  Sum_probs=139.7

Q ss_pred             EEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEe---CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578         602 EVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVA---DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  678 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs---~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~  678 (860)
                      .-+++++........+..+...+.+.+|+| +++.|+..+   .+..|.+||+.++..    ..+..+.+.+.+.+|+|+
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~----~~l~~~~g~~~~~~~SPD  256 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQR----ELVGNFPGMTFAPRFSPD  256 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcE----EEeecCCCcccCcEECCC
Confidence            345666666666666677778899999999 566665554   246899999987532    234455667788999999


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC--cEEEE
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK--TVALW  756 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg--~I~IW  756 (860)
                      |+.++++.+.++.             ..|.+||+.++.    ...+..+.....+..|+|+|++++++...+|  .|++|
T Consensus       257 G~~la~~~~~~g~-------------~~Iy~~d~~~~~----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~  319 (435)
T PRK05137        257 GRKVVMSLSQGGN-------------TDIYTMDLRSGT----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM  319 (435)
T ss_pred             CCEEEEEEecCCC-------------ceEEEEECCCCc----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence            9987777766654             347777887653    2344556666778999999997555544444  57888


Q ss_pred             eCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC--CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578         757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD--RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  834 (860)
Q Consensus       757 Dl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D--g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~  834 (860)
                      |+.++..  ..+..+...+....|+|+|+.++++....  ..|.+||+......            .+   . ....+..
T Consensus       320 d~~g~~~--~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~------------~l---t-~~~~~~~  381 (435)
T PRK05137        320 NADGSNP--RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER------------IL---T-SGFLVEG  381 (435)
T ss_pred             ECCCCCe--EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE------------ec---c-CCCCCCC
Confidence            8876653  33333455567789999999755444333  36777886542210            11   0 1123567


Q ss_pred             EEEccCCCeEEEEEeCC
Q psy4578         835 FSWNPNEPWVICSVSED  851 (860)
Q Consensus       835 i~~spdg~~Llasgs~D  851 (860)
                      ..|+|||+.++.++...
T Consensus       382 p~~spDG~~i~~~~~~~  398 (435)
T PRK05137        382 PTWAPNGRVIMFFRQTP  398 (435)
T ss_pred             CeECCCCCEEEEEEccC
Confidence            89999999877766544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.31  E-value=2.3e-10  Score=126.90  Aligned_cols=207  Identities=10%  Similarity=0.163  Sum_probs=131.3

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCC-CcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH-NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      +....++|+|++..++++...++.|.+|++.+. .......... +.....+++++|++++++++...++.         
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~---------  149 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDR---------  149 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCE---------
Confidence            356789999844444444456899999999742 2222233222 23456788999999987777777777         


Q ss_pred             ccCCCcEEEEeCCCCCCCCC----eeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCC--ce-eeEEeccC--
Q psy4578         701 ENYDQKLMIWDTRSHNVSKP----SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL--KL-KLHSFESH--  771 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~----~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~--~~-~~~~~~~h--  771 (860)
                            |.+||+.+......    ..... .......++|+|+|++++++...+++|.+||++..  .. .+..+..+  
T Consensus       150 ------v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~  222 (330)
T PRK11028        150 ------IRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA  222 (330)
T ss_pred             ------EEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC
Confidence                  99999976321111    01111 13446789999999975555555999999999742  21 12222211  


Q ss_pred             ----CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEE
Q psy4578         772 ----KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS  847 (860)
Q Consensus       772 ----~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llas  847 (860)
                          ......+.++|+|++++++...++.|.+|++.......          ..+..... ......++|+|+|++++++
T Consensus       223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~----------~~~~~~~~-~~~p~~~~~~~dg~~l~va  291 (330)
T PRK11028        223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL----------SFEGHQPT-ETQPRGFNIDHSGKYLIAA  291 (330)
T ss_pred             cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE----------EEeEEEec-cccCCceEECCCCCEEEEE
Confidence                12334688999999755544568999999997532111          11111111 1245578999999998888


Q ss_pred             EeCCCeEee
Q psy4578         848 VSEDNIMQK  856 (860)
Q Consensus       848 gs~Dg~IrI  856 (860)
                      ...++.|.+
T Consensus       292 ~~~~~~v~v  300 (330)
T PRK11028        292 GQKSHHISV  300 (330)
T ss_pred             EccCCcEEE
Confidence            877887765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.31  E-value=4.1e-10  Score=124.84  Aligned_cols=214  Identities=8%  Similarity=0.116  Sum_probs=135.1

Q ss_pred             hhhhhhcccceeeeEeeccCCcEEE-EEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578         614 ICQLLDKLRLLIDVAWHLLHESLFG-SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ  692 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~~~~~la-sgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i  692 (860)
                      ..+.....+....++++| ++++|+ ++..++.|.+|++............ ...+....++|+|++++++++...++. 
T Consensus        27 ~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~-  103 (330)
T PRK11028         27 LLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANC-  103 (330)
T ss_pred             eeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCe-
Confidence            334444456678899999 566554 4456889999999732111122222 123456789999999986666655666 


Q ss_pred             eeecccccccCCCcEEEEeCCCCC-CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceee------
Q psy4578         693 FEVEEEEEENYDQKLMIWDTRSHN-VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL------  765 (860)
Q Consensus       693 ~~~~~~~~~~~dg~I~iwDl~~~~-~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~------  765 (860)
                                    |.+|++.+.. ....+..+. +.....+++++|+|++++++...++.|.+||+++.....      
T Consensus       104 --------------v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~  168 (330)
T PRK11028        104 --------------VSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE  168 (330)
T ss_pred             --------------EEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence                          9999986432 112222222 234567789999999877788888999999998633211      


Q ss_pred             EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec------CccCceEEEEEcc
Q psy4578         766 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG------GHTAKISDFSWNP  839 (860)
Q Consensus       766 ~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~------~h~~~I~~i~~sp  839 (860)
                      .... .......++|+|+|++++++...++.|.+|++.......          ..+....      .+......+.++|
T Consensus       169 ~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~----------~~~~~~~~~p~~~~~~~~~~~i~~~p  237 (330)
T PRK11028        169 VTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI----------ECVQTLDMMPADFSDTRWAADIHITP  237 (330)
T ss_pred             eecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE----------EEEEEEecCCCcCCCCccceeEEECC
Confidence            1111 234567899999999755555569999999997421100          0111110      0112234689999


Q ss_pred             CCCeEEEEEeCCCeEee
Q psy4578         840 NEPWVICSVSEDNIMQK  856 (860)
Q Consensus       840 dg~~Llasgs~Dg~IrI  856 (860)
                      +|++++++...++.|.+
T Consensus       238 dg~~lyv~~~~~~~I~v  254 (330)
T PRK11028        238 DGRHLYACDRTASLISV  254 (330)
T ss_pred             CCCEEEEecCCCCeEEE
Confidence            99988877666777764

>KOG1538|consensus

Probab=99.30  E-value=3.6e-11  Score=133.18  Aligned_cols=225  Identities=19%  Similarity=0.329  Sum_probs=152.8

Q ss_pred             eEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         601 EEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       601 ~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      +.+...+......+..+.+|.+.|+|++|+. +|..||+|+.|..|.+|+..-.   ..+.  ..|...|.|+.|+|-..
T Consensus        33 ~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klE---G~Lk--YSH~D~IQCMsFNP~~h  106 (1081)
T KOG1538|consen   33 SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLE---GILK--YSHNDAIQCMSFNPITH  106 (1081)
T ss_pred             CEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEeccccc---ceee--eccCCeeeEeecCchHH
Confidence            3444444455556666778889999999997 8999999999999999987642   1121  36899999999999887


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN  760 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~  760 (860)
                      . +++++-..                .-+|.......    .. ......|.+++|..||.+ ++.|-.||+|.|-+-..
T Consensus       107 ~-LasCsLsd----------------FglWS~~qK~V----~K-~kss~R~~~CsWtnDGqy-lalG~~nGTIsiRNk~g  163 (1081)
T KOG1538|consen  107 Q-LASCSLSD----------------FGLWSPEQKSV----SK-HKSSSRIICCSWTNDGQY-LALGMFNGTISIRNKNG  163 (1081)
T ss_pred             H-hhhcchhh----------------ccccChhhhhH----Hh-hhhheeEEEeeecCCCcE-EEEeccCceEEeecCCC
Confidence            4 78887554                56887765422    11 113467889999999996 99999999999986554


Q ss_pred             Cce-eeEEeccCCCceEEEEEcCCCC----CEEEEEECCCcEEEEECCCCCcc--cccccc-------c-------CC--
Q psy4578         761 LKL-KLHSFESHKDEIFQVQWSPHNE----TILASSGTDRRLHVWDLSKIGEE--QSTEDA-------E-------DG--  817 (860)
Q Consensus       761 ~~~-~~~~~~~h~~~V~~l~fsp~g~----~lL~tgs~Dg~I~iWdl~~~~~~--~~~~~~-------~-------~~--  817 (860)
                      ... .+..-.+.+++|++++|+|...    -+++......++.++.+......  ......       .       +|  
T Consensus       164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd  243 (1081)
T KOG1538|consen  164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSD  243 (1081)
T ss_pred             CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCC
Confidence            332 1222234677899999988531    24666677777777766532111  000000       0       01  


Q ss_pred             --------CCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         818 --------PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       818 --------~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                              .+..+.+.......|+.++..|++++ ++.|+.||++.
T Consensus       244 k~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~-v~~GCqDGTiA  288 (1081)
T KOG1538|consen  244 KQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQY-VVVGCQDGTIA  288 (1081)
T ss_pred             CceEEEeecCeEEeeccccceeEEEEEEccCCce-EEEEEccCeee
Confidence                    11233344455678999999999996 67888899875

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=2.3e-10  Score=131.71  Aligned_cols=210  Identities=15%  Similarity=0.136  Sum_probs=136.1

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeC---CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVAD---DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~---DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  679 (860)
                      .+++++........+..+...+.+.+|+| +++.++.++.   +..|.+||+.++..    ..+..+.+...+..|+|+|
T Consensus       185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~----~~l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        185 ALQVADSDGYNPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQR----ELVASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEEECCCCCCceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCE----EEeccCCCCccCceECCCC
Confidence            45566665555666667777899999999 5666666553   34699999987532    2233344556688999999


Q ss_pred             CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc--EEEEe
Q psy4578         680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT--VALWD  757 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~--I~IWD  757 (860)
                      +.++++.+.+|.             ..|.+||+.++.    ...+..+.......+|+|+|++++++...+|.  |.++|
T Consensus       260 ~~l~~~~s~~g~-------------~~Iy~~d~~~g~----~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~d  322 (433)
T PRK04922        260 RRLALTLSRDGN-------------PEIYVMDLGSRQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVA  322 (433)
T ss_pred             CEEEEEEeCCCC-------------ceEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence            987777666552             348999998753    23444555556788999999975555555665  66667


Q ss_pred             CCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCC--cEEEEECCCCCcccccccccCCCCccEEEecCccCceEEE
Q psy4578         758 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF  835 (860)
Q Consensus       758 l~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg--~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i  835 (860)
                      +.++..  ..+..+.......+|+|+|++++++...++  .|.+||+.++....               +. +.......
T Consensus       323 l~~g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~---------------Lt-~~~~~~~p  384 (433)
T PRK04922        323 ASGGSA--ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT---------------LT-PGSLDESP  384 (433)
T ss_pred             CCCCCe--EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE---------------CC-CCCCCCCc
Confidence            766553  222223344557899999997555444333  68999987643211               11 11123456


Q ss_pred             EEccCCCeEEEEEeCCC
Q psy4578         836 SWNPNEPWVICSVSEDN  852 (860)
Q Consensus       836 ~~spdg~~Llasgs~Dg  852 (860)
                      .|+|||++++++...++
T Consensus       385 ~~spdG~~i~~~s~~~g  401 (433)
T PRK04922        385 SFAPNGSMVLYATREGG  401 (433)
T ss_pred             eECCCCCEEEEEEecCC
Confidence            89999998776665443

>KOG2394|consensus

Probab=99.28  E-value=5e-11  Score=129.94  Aligned_cols=163  Identities=23%  Similarity=0.414  Sum_probs=130.0

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCC--------------Cc-----------ccCeeeccCCCCCeeEEEEc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH--------------NV-----------SKPSHTVDAHTAEVNCLSFN  676 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~--------------~~-----------~~~~~~~~~h~~~V~~l~~s  676 (860)
                      ..|+|+.|-|.+...|+++-.+|.+.++|..-.              ..           ..++..+.--.+.|..++|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            679999999988889999999999999976310              00           01111122224578899999


Q ss_pred             cCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEE
Q psy4578         677 PYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW  756 (860)
Q Consensus       677 p~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IW  756 (860)
                      |||++ +|+.+.||.               ++|||..+.   ..+..++..-+...|++|+|||+| +++|+.|--|.||
T Consensus       300 ~DG~~-LA~VSqDGf---------------LRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy-IvtGGEDDLVtVw  359 (636)
T KOG2394|consen  300 PDGKY-LATVSQDGF---------------LRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY-IVTGGEDDLVTVW  359 (636)
T ss_pred             CCCce-EEEEecCce---------------EEEeeccHH---HHHHHHHhhccceEEEEEcCCccE-EEecCCcceEEEE
Confidence            99997 899999999               999999886   444455556678999999999996 9999999999999


Q ss_pred             eCCCCceeeEEeccCCCceEEEEEcCC-----------------------------------C------------CCEEE
Q psy4578         757 DLRNLKLKLHSFESHKDEIFQVQWSPH-----------------------------------N------------ETILA  789 (860)
Q Consensus       757 Dl~~~~~~~~~~~~h~~~V~~l~fsp~-----------------------------------g------------~~lL~  789 (860)
                      .+...+. +..-.+|+++|+.++|.|-                                   +            .|-+.
T Consensus       360 Sf~erRV-VARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfG  438 (636)
T KOG2394|consen  360 SFEERRV-VARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFG  438 (636)
T ss_pred             EeccceE-EEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEee
Confidence            9999887 8888999999999999830                                   1            23477


Q ss_pred             EEECCCcEEEEECCCC
Q psy4578         790 SSGTDRRLHVWDLSKI  805 (860)
Q Consensus       790 tgs~Dg~I~iWdl~~~  805 (860)
                      +.|.|-.+.+||+...
T Consensus       439 SVGqDTqlcLWDlteD  454 (636)
T KOG2394|consen  439 SVGQDTQLCLWDLTED  454 (636)
T ss_pred             cccccceEEEEecchh
Confidence            8889999999998763

>KOG1523|consensus

Probab=99.27  E-value=1.1e-10  Score=120.27  Aligned_cols=176  Identities=18%  Similarity=0.288  Sum_probs=137.2

Q ss_pred             hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         612 AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       612 ~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      .....+..|...|++|+|+| ..+.+++|+.|..-.||....+...++...+..+...++++.|+|.++ .|++|+....
T Consensus        46 ~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~  123 (361)
T KOG1523|consen   46 EPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARL  123 (361)
T ss_pred             eeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccE
Confidence            44555667788999999999 677899999999999999966666777777788899999999999888 5999998887


Q ss_pred             eeeecccccccCCCcEEEEeCCCCCCC-CCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC-----CCCce--
Q psy4578         692 QFEVEEEEEENYDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL-----RNLKL--  763 (860)
Q Consensus       692 i~~~~~~~~~~~dg~I~iwDl~~~~~~-~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl-----~~~~~--  763 (860)
                                     |.||-.+..+.. ...+.-+.+.+.|++++|+|++- ++++|+.|+.+++|..     +....  
T Consensus       124 ---------------isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~  187 (361)
T KOG1523|consen  124 ---------------ISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPT  187 (361)
T ss_pred             ---------------EEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeeeccccCCCCC
Confidence                           777766654321 11222345678899999999998 6999999999999853     21110  


Q ss_pred             ----------eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         764 ----------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       764 ----------~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                                .+..+....+.+..+.|+|+|.. |+-.+.|+++.+-|.....
T Consensus       188 pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~-lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  188 PWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR-LAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CCccCCcHHHHHHhhccCCCceeeeEeCCCCCE-eeEecCCCceEEeecCCCc
Confidence                      13334456789999999999986 8899999999999977643

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.27  E-value=2.4e-10  Score=116.36  Aligned_cols=152  Identities=20%  Similarity=0.462  Sum_probs=102.4

Q ss_pred             eeeEeeccCCcEEEEEeC---------CCcEEEEEcCCCCcccCeeecc-CCCCCeeEEEEccCCCeEEEE-EeCCCcee
Q psy4578         625 IDVAWHLLHESLFGSVAD---------DQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILAT-GSADKTQF  693 (860)
Q Consensus       625 ~~v~~sp~~~~~lasgs~---------DG~I~IWd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~llas-gs~Dg~i~  693 (860)
                      ..+.|++.+..+++....         -|...+|.++...  .....+. ...++|.+++|+|+|+.++++ |..++.  
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~--   84 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK--   84 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--CccceeeccCCCceEEEEECcCCCEEEEEEccCCcc--
Confidence            467899855555554441         2446666664332  2222332 234579999999999975444 334455  


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC---CCcEEEEeCCCCceeeEEecc
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA---DKTVALWDLRNLKLKLHSFES  770 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~---Dg~I~IWDl~~~~~~~~~~~~  770 (860)
                                   |.+||++.    ..+..+.  ...++.+.|+|+|++ +++|+.   .|.|.+||+++... +.... 
T Consensus        85 -------------v~lyd~~~----~~i~~~~--~~~~n~i~wsP~G~~-l~~~g~~n~~G~l~~wd~~~~~~-i~~~~-  142 (194)
T PF08662_consen   85 -------------VTLYDVKG----KKIFSFG--TQPRNTISWSPDGRF-LVLAGFGNLNGDLEFWDVRKKKK-ISTFE-  142 (194)
T ss_pred             -------------cEEEcCcc----cEeEeec--CCCceEEEECCCCCE-EEEEEccCCCcEEEEEECCCCEE-eeccc-
Confidence                         99999973    4555553  567789999999997 555543   46799999997775 55443 


Q ss_pred             CCCceEEEEEcCCCCCEEEEEE------CCCcEEEEECCC
Q psy4578         771 HKDEIFQVQWSPHNETILASSG------TDRRLHVWDLSK  804 (860)
Q Consensus       771 h~~~V~~l~fsp~g~~lL~tgs------~Dg~I~iWdl~~  804 (860)
                      | ..++.++|+|+|++ +++++      .|+.++||++..
T Consensus       143 ~-~~~t~~~WsPdGr~-~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  143 H-SDATDVEWSPDGRY-LATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             c-CcEEEEEEcCCCCE-EEEEEeccceeccccEEEEEecC
Confidence            3 34789999999998 55554      378999999864

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=4.5e-10  Score=128.86  Aligned_cols=211  Identities=15%  Similarity=0.111  Sum_probs=132.8

Q ss_pred             EEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEe---CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578         602 EVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVA---DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  678 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs---~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~  678 (860)
                      .-+++++........+..+...+.+.+|+| +++.++..+   .+..|.+|++.+++. ..+.   ...+.+....|+||
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~---~~~~~~~~~~~SPD  253 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV-RQVA---SFPRHNGAPAFSPD  253 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCe-EEcc---CCCCCcCCeEECCC
Confidence            346666665555555666667899999999 555555433   245789999987532 2222   23344567899999


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEE--
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW--  756 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IW--  756 (860)
                      |+.++++.+.+|.             ..|.+||+.++.    ...+..+...+....|+|+|+.++++...+|...||  
T Consensus       254 G~~La~~~~~~g~-------------~~I~~~d~~tg~----~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~  316 (429)
T PRK03629        254 GSKLAFALSKTGS-------------LNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV  316 (429)
T ss_pred             CCEEEEEEcCCCC-------------cEEEEEECCCCC----EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence            9987666665553             238889998753    233344455678899999999755555555555555  


Q ss_pred             eCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC--CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578         757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD--RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  834 (860)
Q Consensus       757 Dl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D--g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~  834 (860)
                      |+.++..  ..+..+.....+..|+|+|+++++++..+  ..|.+||+.++...            .+.  ..  ....+
T Consensus       317 d~~~g~~--~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~------------~Lt--~~--~~~~~  378 (429)
T PRK03629        317 NINGGAP--QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ------------VLT--DT--FLDET  378 (429)
T ss_pred             ECCCCCe--EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE------------EeC--CC--CCCCC
Confidence            6665543  33333444566789999999855555444  35788888764321            111  11  12235


Q ss_pred             EEEccCCCeEEEEEeCCC
Q psy4578         835 FSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       835 i~~spdg~~Llasgs~Dg  852 (860)
                      ..|+|||+++++++.+.+
T Consensus       379 p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        379 PSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             ceECCCCCEEEEEEcCCC
Confidence            789999998666655443

>KOG2111|consensus

Probab=99.27  E-value=2e-09  Score=111.33  Aligned_cols=188  Identities=19%  Similarity=0.303  Sum_probs=128.0

Q ss_pred             ceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC--CCCC
Q psy4578         592 GYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA--HTAE  669 (860)
Q Consensus       592 G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~--h~~~  669 (860)
                      |.-......+.++.|++. .......+.-..+|.+|++.+  + .+++.- .+.|.||...+.  .+.+..+..  .+..
T Consensus        66 Gg~~pky~pNkviIWDD~-k~~~i~el~f~~~I~~V~l~r--~-riVvvl-~~~I~VytF~~n--~k~l~~~et~~NPkG  138 (346)
T KOG2111|consen   66 GGSRPKYPPNKVIIWDDL-KERCIIELSFNSEIKAVKLRR--D-RIVVVL-ENKIYVYTFPDN--PKLLHVIETRSNPKG  138 (346)
T ss_pred             CCCCCCCCCceEEEEecc-cCcEEEEEEeccceeeEEEcC--C-eEEEEe-cCeEEEEEcCCC--hhheeeeecccCCCc
Confidence            333344455666666654 444444566678999999985  3 344443 468999999853  233333322  2233


Q ss_pred             eeEEEEccCCCeEEEE-EeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee
Q psy4578         670 VNCLSFNPYSEYILAT-GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS  748 (860)
Q Consensus       670 V~~l~~sp~g~~llas-gs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs  748 (860)
                      ..+++-+.... +++. |-.-               |+|.|-|+..... .....+.+|.+.|.|++.+-+|. ++||+|
T Consensus       139 lC~~~~~~~k~-~LafPg~k~---------------GqvQi~dL~~~~~-~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaS  200 (346)
T KOG2111|consen  139 LCSLCPTSNKS-LLAFPGFKT---------------GQVQIVDLASTKP-NAPSIINAHDSDIACVALNLQGT-LVATAS  200 (346)
T ss_pred             eEeecCCCCce-EEEcCCCcc---------------ceEEEEEhhhcCc-CCceEEEcccCceeEEEEcCCcc-EEEEec
Confidence            33333222222 2332 2233               4599999987533 23467889999999999999999 699999


Q ss_pred             CCCc-EEEEeCCCCceeeEEecc--CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         749 ADKT-VALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       749 ~Dg~-I~IWDl~~~~~~~~~~~~--h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      ..|+ |||||..++.. +..+..  ....+.+++|||++.+ |+.+++.|+++|+.++...
T Consensus       201 tkGTLIRIFdt~~g~~-l~E~RRG~d~A~iy~iaFSp~~s~-LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  201 TKGTLIRIFDTEDGTL-LQELRRGVDRADIYCIAFSPNSSW-LAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             cCcEEEEEEEcCCCcE-eeeeecCCchheEEEEEeCCCccE-EEEEcCCCeEEEEEeecCC
Confidence            9998 89999999987 665542  3457999999999985 8899999999999988643

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.27  E-value=2e-10  Score=116.95  Aligned_cols=152  Identities=18%  Similarity=0.401  Sum_probs=99.1

Q ss_pred             eeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEE-EEee
Q psy4578         670 VNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL-ATGS  748 (860)
Q Consensus       670 V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~ll-asgs  748 (860)
                      -..+.|++.|.++++....+-.      .......|...+|.++..........+. ..+.|.+++|+|+|..++ ++|.
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~------~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~   80 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVD------KSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGS   80 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeec------cCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEcc
Confidence            3568999999998777662210      0112223445666664432222222222 345699999999998643 3355


Q ss_pred             CCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC---CCcEEEEECCCCCcccccccccCCCCccEEEe
Q psy4578         749 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT---DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH  825 (860)
Q Consensus       749 ~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~---Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~  825 (860)
                      .++.|.+||++. .. +..+.  ...++.+.|+|+|++ +++||.   .|.|.+||+++.+...              ..
T Consensus        81 ~~~~v~lyd~~~-~~-i~~~~--~~~~n~i~wsP~G~~-l~~~g~~n~~G~l~~wd~~~~~~i~--------------~~  141 (194)
T PF08662_consen   81 MPAKVTLYDVKG-KK-IFSFG--TQPRNTISWSPDGRF-LVLAGFGNLNGDLEFWDVRKKKKIS--------------TF  141 (194)
T ss_pred             CCcccEEEcCcc-cE-eEeec--CCCceEEEECCCCCE-EEEEEccCCCcEEEEEECCCCEEee--------------cc
Confidence            678999999973 32 44443  567889999999996 666653   4779999999643322              11


Q ss_pred             cCccCceEEEEEccCCCeEEEEEe
Q psy4578         826 GGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       826 ~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                        +...++.++|+|||++++++.+
T Consensus       142 --~~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  142 --EHSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             --ccCcEEEEEEcCCCCEEEEEEe
Confidence              2345789999999998776655

>KOG1517|consensus

Probab=99.26  E-value=3e-10  Score=132.15  Aligned_cols=218  Identities=18%  Similarity=0.242  Sum_probs=149.4

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEc-cCCCeEEEEEeCCCceeeeccccc--
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN-PYSEYILATGSADKTQFEVEEEEE--  700 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~s-p~g~~llasgs~Dg~i~~~~~~~~--  700 (860)
                      -..+.|+| -...++++...-.|+|||.+.++.......-......|+.+.+- .++..++.+|+.||.|++|+.-..  
T Consensus      1067 pk~~~~hp-f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1067 PKTLKFHP-FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CceeeecC-CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            45567777 56677777767799999998854322222222234578888875 445568999999999999964322  


Q ss_pred             -------------------------------------ccCCCcEEEEeCCCCCCCCCeeee-cCCCCCeEEEEEcCCCCc
Q psy4578         701 -------------------------------------ENYDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSEY  742 (860)
Q Consensus       701 -------------------------------------~~~dg~I~iwDl~~~~~~~~~~~~-~~h~~~I~sl~~sp~g~~  742 (860)
                                                           ++.-..|+|||.....   .+..+ .+....|+++.-+-.+..
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~---~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ---VVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce---eEeecccCCCccceeecccccCCc
Confidence                                                 0113368999998752   22222 233455677765544444


Q ss_pred             EEEEeeCCCcEEEEeCCCCce--eeEEeccCCCc--eEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578         743 ILATGSADKTVALWDLRNLKL--KLHSFESHKDE--IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  818 (860)
Q Consensus       743 llasgs~Dg~I~IWDl~~~~~--~~~~~~~h~~~--V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~  818 (860)
                      ++++|..||+|++||.|....  .+..+..|+..  |..+.+.+.|-.-|++|+.||.|++||++...... +       
T Consensus      1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~-~------- 1294 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET-F------- 1294 (1387)
T ss_pred             eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc-c-------
Confidence            799999999999999986543  46777888887  99999998775558999999999999999842211 1       


Q ss_pred             CccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       819 ~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                       ..+.......+..+++..|+..+ ++|+|+. +.|+|
T Consensus      1295 -~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1295 -LTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKI 1329 (1387)
T ss_pred             -ceeeeccccCccceeeeeccCCC-eeeecCc-ceEEE
Confidence             11112222234699999999999 6888887 77665

>KOG0642|consensus

Probab=99.26  E-value=2.9e-11  Score=132.80  Aligned_cols=189  Identities=21%  Similarity=0.225  Sum_probs=142.0

Q ss_pred             hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCC-------CcccCeeeccCCCCCeeEEEEccCCCeEEEE
Q psy4578         613 QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH-------NVSKPSHTVDAHTAEVNCLSFNPYSEYILAT  685 (860)
Q Consensus       613 ~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~-------~~~~~~~~~~~h~~~V~~l~~sp~g~~llas  685 (860)
                      .+..+..|.++|.|++..+ ++..+.+|+.||+|+.|++...       .......++.||.+.|+.+++|+.... |++
T Consensus       336 pi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Lls  413 (577)
T KOG0642|consen  336 PILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLS  413 (577)
T ss_pred             eeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eee
Confidence            4666778999999999997 8999999999999999976421       111234567899999999999998775 899


Q ss_pred             EeCCCceeeeccccccc-------C-------------------CCcEEEEeCCCCCCCCCeeeecC-------CCCCeE
Q psy4578         686 GSADKTQFEVEEEEEEN-------Y-------------------DQKLMIWDTRSHNVSKPSHTVDA-------HTAEVN  732 (860)
Q Consensus       686 gs~Dg~i~~~~~~~~~~-------~-------------------dg~I~iwDl~~~~~~~~~~~~~~-------h~~~I~  732 (860)
                      ++.||+++.|.......       .                   +.....+++........+..+..       -...+.
T Consensus       414 cs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in  493 (577)
T KOG0642|consen  414 CSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN  493 (577)
T ss_pred             ecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence            99999988887654421       0                   11112222221111111111111       123567


Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         733 CLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       733 sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      -+.++|.+. +.+++..|+.|+++|..++.. ++....|...++++++.|+|.+ |++++.||.+++|.+....
T Consensus       494 ~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~-l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  494 KVVSHPTAD-ITFTAHEDRSIRFFDNKTGKI-LHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             eEEecCCCC-eeEecccCCceeccccccccc-chheeeccceecceeecCCCce-EEeecCCceeehhhccchh
Confidence            889999998 588999999999999999987 8888899999999999999997 8899999999999987633

>KOG0322|consensus

Probab=99.24  E-value=5.6e-11  Score=119.45  Aligned_cols=163  Identities=21%  Similarity=0.341  Sum_probs=120.4

Q ss_pred             ccceeeeEeeccCC--cEEEEEeCCCcEEEEEcCCCC-------cccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         621 LRLLIDVAWHLLHE--SLFGSVADDQKLMIWDTRSHN-------VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       621 ~~~V~~v~~sp~~~--~~lasgs~DG~I~IWd~~~~~-------~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      .+.+.|..|.-..+  -++++|..+|.+.+||+.++.       ..+.......|..+|.++.+.+.-.. =++|+.+..
T Consensus       150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgga~dk  228 (323)
T KOG0322|consen  150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGGADDK  228 (323)
T ss_pred             cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-CcCCCcccc
Confidence            35677777543333  357788899999999998752       11333445678999999999864332 234444443


Q ss_pred             eeeecccccccCCCcEEEEeCCCCC-CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc
Q psy4578         692 QFEVEEEEEENYDQKLMIWDTRSHN-VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES  770 (860)
Q Consensus       692 i~~~~~~~~~~~dg~I~iwDl~~~~-~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~  770 (860)
                                     +..|++.... .........-....|..+..-||++ ++||++.|+.||||..++... +..+.-
T Consensus       229 ---------------l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~p-LAVLky  291 (323)
T KOG0322|consen  229 ---------------LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNP-LAVLKY  291 (323)
T ss_pred             ---------------ceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCc-hhhhhh
Confidence                           7788776431 1111122222345688999999999 799999999999999999986 888999


Q ss_pred             CCCceEEEEEcCCCCCEEEEEECCCcEEEEEC
Q psy4578         771 HKDEIFQVQWSPHNETILASSGTDRRLHVWDL  802 (860)
Q Consensus       771 h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl  802 (860)
                      |.+.|++++|+|+.+ ++++++.|++|-+|++
T Consensus       292 Hsagvn~vAfspd~~-lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  292 HSAGVNAVAFSPDCE-LMAAASKDARISLWKL  322 (323)
T ss_pred             hhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence            999999999999976 5999999999999986

>KOG4497|consensus

Probab=99.24  E-value=8.9e-11  Score=121.04  Aligned_cols=215  Identities=18%  Similarity=0.310  Sum_probs=148.1

Q ss_pred             cceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCe
Q psy4578         591 QGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEV  670 (860)
Q Consensus       591 ~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V  670 (860)
                      +|.+..+.... -+.+.+..+-++.+++..-+.|.-+.|..+...+++....|+.|.+|++...+   -...+.....++
T Consensus        19 ~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---w~ckIdeg~agl   94 (447)
T KOG4497|consen   19 CGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---WYCKIDEGQAGL   94 (447)
T ss_pred             CCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecce---eEEEeccCCCcc
Confidence            34443333333 34556777889999999999999999998666677888899999999998743   345556667889


Q ss_pred             eEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC-
Q psy4578         671 NCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA-  749 (860)
Q Consensus       671 ~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~-  749 (860)
                      .+++|+|+|+.++.+...+-.               |.+|.+.+..    ...+......+..++|+|+|++ .+.+++ 
T Consensus        95 s~~~WSPdgrhiL~tseF~lr---------------iTVWSL~t~~----~~~~~~pK~~~kg~~f~~dg~f-~ai~sRr  154 (447)
T KOG4497|consen   95 SSISWSPDGRHILLTSEFDLR---------------ITVWSLNTQK----GYLLPHPKTNVKGYAFHPDGQF-CAILSRR  154 (447)
T ss_pred             eeeeECCCcceEeeeecceeE---------------EEEEEeccce----eEEecccccCceeEEECCCCce-eeeeecc
Confidence            999999999998988888877               9999998852    2233333456689999999996 555544 


Q ss_pred             CCc--EEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecC
Q psy4578         750 DKT--VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG  827 (860)
Q Consensus       750 Dg~--I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~  827 (860)
                      |..  +.|........ +..+...+-..+.+.|+|||.. |         .+||---.-              .+... .
T Consensus       155 DCkdyv~i~~c~~W~l-l~~f~~dT~DltgieWsPdg~~-l---------aVwd~~Ley--------------kv~aY-e  208 (447)
T KOG4497|consen  155 DCKDYVQISSCKAWIL-LKEFKLDTIDLTGIEWSPDGNW-L---------AVWDNVLEY--------------KVYAY-E  208 (447)
T ss_pred             cHHHHHHHHhhHHHHH-HHhcCCCcccccCceECCCCcE-E---------EEecchhhh--------------eeeee-e
Confidence            211  22222222222 4445555566788999999975 3         355532100              00000 1


Q ss_pred             ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         828 HTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       828 h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ..-.+..+.|+|.++ +++.|+.|+.+||
T Consensus       209 ~~lG~k~v~wsP~~q-flavGsyD~~lrv  236 (447)
T KOG4497|consen  209 RGLGLKFVEWSPCNQ-FLAVGSYDQMLRV  236 (447)
T ss_pred             eccceeEEEeccccc-eEEeeccchhhhh
Confidence            124688899999999 6889999999986

>KOG1587|consensus

Probab=99.23  E-value=4.7e-10  Score=129.17  Aligned_cols=197  Identities=20%  Similarity=0.388  Sum_probs=147.2

Q ss_pred             CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc----------------------
Q psy4578         643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE----------------------  700 (860)
Q Consensus       643 DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~----------------------  700 (860)
                      ++.+.+|++....  .+...+ .-...|+|+.|+|...++++.|+.+|.|.+|++...                      
T Consensus       221 ~~~~~vW~~~~p~--~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  221 DGVLLVWSLKNPN--TPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV  297 (555)
T ss_pred             CceEEEEecCCCC--CceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence            3579999998752  333333 236789999999999999999999999999987654                      


Q ss_pred             -------------ccCCCcEEEEeCCCCCCCCCe---eeec------CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578         701 -------------ENYDQKLMIWDTRSHNVSKPS---HTVD------AHTAEVNCLSFNPYSEYILATGSADKTVALWDL  758 (860)
Q Consensus       701 -------------~~~dg~I~iwDl~~~~~~~~~---~~~~------~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl  758 (860)
                                   .+.||.|..|+++.-......   ....      .....+++++|.+...+.++.|+.+|.|.--+-
T Consensus       298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r  377 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR  377 (555)
T ss_pred             EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence                         135899999988754221111   1111      223568999999988888999999999887333


Q ss_pred             CCCce-------eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCc
Q psy4578         759 RNLKL-------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK  831 (860)
Q Consensus       759 ~~~~~-------~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~  831 (860)
                      .+...       ....+..|.+.|+++.++|.+..++.++| |.++++|.....             ..++..+..+...
T Consensus       378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~-------------~~Pl~~~~~~~~~  443 (555)
T KOG1587|consen  378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI-------------ASPLLSLDSSPDY  443 (555)
T ss_pred             cCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC-------------CCcchhhhhccce
Confidence            22221       13355678899999999999988777777 999999997731             2344555567777


Q ss_pred             eEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         832 ISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       832 I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |++++|||..+.+++++..||.+.|
T Consensus       444 v~~vaWSptrpavF~~~d~~G~l~i  468 (555)
T KOG1587|consen  444 VTDVAWSPTRPAVFATVDGDGNLDI  468 (555)
T ss_pred             eeeeEEcCcCceEEEEEcCCCceeh
Confidence            9999999999999999999999876

>KOG1538|consensus

Probab=99.21  E-value=1e-10  Score=129.59  Aligned_cols=188  Identities=20%  Similarity=0.393  Sum_probs=138.9

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN  702 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~  702 (860)
                      .|..++|-|++..+++++  +..+.+||.+.|   ..++++++|...|.|++|+.+|. .+++|+.|..           
T Consensus        14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG---~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~-----------   76 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDG---TLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKS-----------   76 (1081)
T ss_pred             chheeEECCCCceEEEec--CCEEEEEeCCCc---ccccccccccceEEEEEEccCCc-eeccCCCcee-----------
Confidence            899999999555544443  348999999985   55788999999999999999999 5999999998           


Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  782 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp  782 (860)
                          |.+|+..-..   . .. ..|+..|.|+.|+|-... ++||+- +..-+|.......  ... .....+.+++|..
T Consensus        77 ----VI~W~~klEG---~-Lk-YSH~D~IQCMsFNP~~h~-LasCsL-sdFglWS~~qK~V--~K~-kss~R~~~CsWtn  142 (1081)
T KOG1538|consen   77 ----VIIWTSKLEG---I-LK-YSHNDAIQCMSFNPITHQ-LASCSL-SDFGLWSPEQKSV--SKH-KSSSRIICCSWTN  142 (1081)
T ss_pred             ----EEEecccccc---e-ee-eccCCeeeEeecCchHHH-hhhcch-hhccccChhhhhH--Hhh-hhheeEEEeeecC
Confidence                9999765431   1 11 358999999999998875 888875 3567887766543  111 1346788999999


Q ss_pred             CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC----eEEEEEeCCCeE
Q psy4578         783 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP----WVICSVSEDNIM  854 (860)
Q Consensus       783 ~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~----~Llasgs~Dg~I  854 (860)
                      ||.+ ++.|-.||+|.+-+-.. +           +...+...+|..++|++++|+|...    -+++....+.++
T Consensus       143 DGqy-lalG~~nGTIsiRNk~g-E-----------ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL  205 (1081)
T KOG1538|consen  143 DGQY-LALGMFNGTISIRNKNG-E-----------EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL  205 (1081)
T ss_pred             CCcE-EEEeccCceEEeecCCC-C-----------cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence            9985 88999999999875332 1           1234555567789999999999643    134444444443

>KOG3881|consensus

Probab=99.21  E-value=5.8e-10  Score=117.96  Aligned_cols=201  Identities=17%  Similarity=0.217  Sum_probs=152.4

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc-cCeeeccCCCCCeeEEEEccCCCeEEEEEeCC--Cceeee
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNPYSEYILATGSAD--KTQFEV  695 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~-~~~~~~~~h~~~V~~l~~sp~g~~llasgs~D--g~i~~~  695 (860)
                      ...++|.++...   +..|++|-.+|.+.+|....+... .+...+.. ..++..+.-++...+++++|+..  ..    
T Consensus       103 l~~~~I~gl~~~---dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~----  174 (412)
T KOG3881|consen  103 LGTKSIKGLKLA---DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINE----  174 (412)
T ss_pred             cccccccchhhc---CCEEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccc----
Confidence            344566666665   356777888999999999854311 12222222 35678888888888999999887  44    


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeecC---------CCCCeEEEEEcCC-CCcEEEEeeCCCcEEEEeCCCCceee
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDA---------HTAEVNCLSFNPY-SEYILATGSADKTVALWDLRNLKLKL  765 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~---------h~~~I~sl~~sp~-g~~llasgs~Dg~I~IWDl~~~~~~~  765 (860)
                                 +.+||+...   .++.+-+.         -.-.++++.|-+. -.+.||+++.-+.+++||.+.++.++
T Consensus       175 -----------lkiwdle~~---~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV  240 (412)
T KOG3881|consen  175 -----------LKIWDLEQS---KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV  240 (412)
T ss_pred             -----------eeeeecccc---eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce
Confidence                       788888765   22222111         1235677888775 13469999999999999999999999


Q ss_pred             EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEE
Q psy4578         766 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI  845 (860)
Q Consensus       766 ~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Ll  845 (860)
                      ..+.-...+++++...|.|.+ +++|..-|.+..||++.+...             ...+.+..+.|+++..+|.++ ++
T Consensus       241 ~~fd~~E~~is~~~l~p~gn~-Iy~gn~~g~l~~FD~r~~kl~-------------g~~~kg~tGsirsih~hp~~~-~l  305 (412)
T KOG3881|consen  241 AQFDFLENPISSTGLTPSGNF-IYTGNTKGQLAKFDLRGGKLL-------------GCGLKGITGSIRSIHCHPTHP-VL  305 (412)
T ss_pred             eEeccccCcceeeeecCCCcE-EEEecccchhheecccCceee-------------ccccCCccCCcceEEEcCCCc-eE
Confidence            999988999999999999985 889999999999999984432             223667889999999999999 68


Q ss_pred             EEEeCCCeEee
Q psy4578         846 CSVSEDNIMQK  856 (860)
Q Consensus       846 asgs~Dg~IrI  856 (860)
                      ++||-|..+||
T Consensus       306 as~GLDRyvRI  316 (412)
T KOG3881|consen  306 ASCGLDRYVRI  316 (412)
T ss_pred             EeeccceeEEE
Confidence            99999999998

>KOG2110|consensus

Probab=99.20  E-value=6.7e-10  Score=116.74  Aligned_cols=164  Identities=21%  Similarity=0.363  Sum_probs=123.5

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      .-..+|.+|.++.   +.|+++-.+ .|.|||+++-+....+.+...+...+.+++.++.+.++..=++.+         
T Consensus        85 ~fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t---------  151 (391)
T KOG2110|consen   85 FFPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT---------  151 (391)
T ss_pred             ecCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC---------
Confidence            3346788888874   344545443 499999998433333333344566677777777777754443332         


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc-EEEEeCCCCceeeEEeccC--CCce
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT-VALWDLRNLKLKLHSFESH--KDEI  775 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~-I~IWDl~~~~~~~~~~~~h--~~~V  775 (860)
                           .|.|.+||..+-   +++..+..|.+.+.+++|+++|. ++||+|..|+ ||||++.+++. +..|...  ...|
T Consensus       152 -----~GdV~l~d~~nl---~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~k-l~eFRRG~~~~~I  221 (391)
T KOG2110|consen  152 -----SGDVVLFDTINL---QPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQK-LYEFRRGTYPVSI  221 (391)
T ss_pred             -----CceEEEEEcccc---eeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccE-eeeeeCCceeeEE
Confidence                 356999999886   77788899999999999999999 6999999998 78999999887 6766632  2468


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         776 FQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      .+++|+|++++ |++.|..++|++|.+....
T Consensus       222 ySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  222 YSLSFSPDSQF-LAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEECCCCCe-EEEecCCCeEEEEEecccc
Confidence            89999999985 8888889999999987644

>KOG0649|consensus

Probab=99.20  E-value=1.1e-09  Score=109.08  Aligned_cols=198  Identities=18%  Similarity=0.254  Sum_probs=129.1

Q ss_pred             cceeeeeeecceeecccceeEEEEeecc-----chhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc
Q psy4578         582 LKLFLNFFKQGYFKGTHHIEEVMYLENK-----TRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV  656 (860)
Q Consensus       582 ~~l~~~ll~~G~~~Gs~~l~~il~l~n~-----~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~  656 (860)
                      +....+++..|...|......+-.+...     .+..+.....|.++|+.+.|.   +.+|++|+ ||.|+-|..+....
T Consensus        18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw~W~E~~e   93 (325)
T KOG0649|consen   18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGWEWNEEEE   93 (325)
T ss_pred             hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEeeehhhhh
Confidence            3344455666666665444333322221     122334445778999999998   45666665 59999998753211


Q ss_pred             -------cc---CeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC
Q psy4578         657 -------SK---PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA  726 (860)
Q Consensus       657 -------~~---~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~  726 (860)
                             .+   +.+.-...-..|+++...|..+.++.+| .|+.               ++-||++++   +....+++
T Consensus        94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~---------------~y~~dlE~G---~i~r~~rG  154 (325)
T KOG0649|consen   94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGV---------------IYQVDLEDG---RIQREYRG  154 (325)
T ss_pred             hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeE---------------EEEEEecCC---EEEEEEcC
Confidence                   00   1111011124688999999888755555 6777               999999998   67788999


Q ss_pred             CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc---------C-CCceEEEEEcCCCCCEEEEEECCCc
Q psy4578         727 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES---------H-KDEIFQVQWSPHNETILASSGTDRR  796 (860)
Q Consensus       727 h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~---------h-~~~V~~l~fsp~g~~lL~tgs~Dg~  796 (860)
                      |+..|.++.--..+.. +.+|+.||++++||+++.+. +..+..         | ..+|-+++-+  ..+ + .||....
T Consensus       155 HtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~--edW-l-vCGgGp~  228 (325)
T KOG0649|consen  155 HTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVN--EDW-L-VCGGGPK  228 (325)
T ss_pred             CcceeeeeeecccCcc-eeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEecc--Cce-E-EecCCCc
Confidence            9999999988443443 78999999999999999886 444332         2 2345556554  444 4 3555778


Q ss_pred             EEEEECCCCCcc
Q psy4578         797 LHVWDLSKIGEE  808 (860)
Q Consensus       797 I~iWdl~~~~~~  808 (860)
                      +.+|.++..++.
T Consensus       229 lslwhLrsse~t  240 (325)
T KOG0649|consen  229 LSLWHLRSSEST  240 (325)
T ss_pred             eeEEeccCCCce
Confidence            999999986543

>KOG2394|consensus

Probab=99.20  E-value=2.2e-10  Score=125.01  Aligned_cols=188  Identities=20%  Similarity=0.319  Sum_probs=133.6

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCcccCee-eccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc---------
Q psy4578         633 HESLFGSVADDQKLMIWDTRSHNVSKPSH-TVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN---------  702 (860)
Q Consensus       633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~-~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~---------  702 (860)
                      ++--+..|-..|.|.+.|....+..+.+. ........|+|+.|-|.+..+++++-.+|..+.++..-...         
T Consensus       184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~  263 (636)
T KOG2394|consen  184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL  263 (636)
T ss_pred             CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence            34457778888999999876522111110 00112468999999998888899999999866553322110         


Q ss_pred             CC-C--cEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578         703 YD-Q--KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ  779 (860)
Q Consensus       703 ~d-g--~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~  779 (860)
                      .+ .  .|..|--...  ..++....--.+.|...+|+|||++ ||+-+.||.++|||..+... +..++.--+...|++
T Consensus       264 k~~~~f~i~t~ksk~~--rNPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eL-lg~mkSYFGGLLCvc  339 (636)
T KOG2394|consen  264 KDGDQFAILTSKSKKT--RNPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQEL-LGVMKSYFGGLLCVC  339 (636)
T ss_pred             CCCCeeEEeeeecccc--CCccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHHHH-HHHHHhhccceEEEE
Confidence            00 1  1222211111  1233333334568999999999996 99999999999999998775 555555567899999


Q ss_pred             EcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc
Q psy4578         780 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP  839 (860)
Q Consensus       780 fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp  839 (860)
                      |+|||++ +++||.|.-|.||.+..              .+.+..-.+|.+.|+.++|+|
T Consensus       340 WSPDGKy-IvtGGEDDLVtVwSf~e--------------rRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  340 WSPDGKY-IVTGGEDDLVTVWSFEE--------------RRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EcCCccE-EEecCCcceEEEEEecc--------------ceEEEeccccccceeeEeecc
Confidence            9999997 89999999999999987              566777889999999999997

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=4.4e-09  Score=120.39  Aligned_cols=220  Identities=13%  Similarity=0.141  Sum_probs=130.1

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCc--EEEEEeCCCc--EEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHES--LFGSVADDQK--LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  678 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~--~lasgs~DG~--I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~  678 (860)
                      -+++.+........+......+.+-+|+|++..  ++++...+|.  |.+.++.+++. ..+.   ...+.....+|+||
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt---~~~g~~~~p~wSPD  241 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKIL---ALQGNQLMPTFSPR  241 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEee---cCCCCccceEECCC
Confidence            344445555555555556667788899995544  3335555554  66667766532 2232   23445567899999


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe-
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD-  757 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD-  757 (860)
                      |+.++.+...+|.           .+..+..|++..+..........++.+.....+|+|+|+.+++++..+|...+|. 
T Consensus       242 G~~Laf~s~~~g~-----------~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~  310 (428)
T PRK01029        242 KKLLAFISDRYGN-----------PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIM  310 (428)
T ss_pred             CCEEEEEECCCCC-----------cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence            9987766654442           1122445776653211222222222334567899999998666666677656654 


Q ss_pred             -CCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC--CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578         758 -LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD--RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  834 (860)
Q Consensus       758 -l~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D--g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~  834 (860)
                       +.........+..+...+....|+|+|+.+++++..+  ..|.+||+.++....               +......+.+
T Consensus       311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~---------------Lt~~~~~~~~  375 (428)
T PRK01029        311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ---------------LTTSPENKES  375 (428)
T ss_pred             ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE---------------ccCCCCCccc
Confidence             4322111344444555677899999999755555443  468999988744321               1111234567


Q ss_pred             EEEccCCCeEEEEEeCCC
Q psy4578         835 FSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       835 i~~spdg~~Llasgs~Dg  852 (860)
                      ..|+|||+++++++..++
T Consensus       376 p~wSpDG~~L~f~~~~~g  393 (428)
T PRK01029        376 PSWAIDSLHLVYSAGNSN  393 (428)
T ss_pred             eEECCCCCEEEEEECCCC
Confidence            899999998777665543

>KOG0650|consensus

Probab=99.13  E-value=4.9e-10  Score=123.61  Aligned_cols=195  Identities=18%  Similarity=0.302  Sum_probs=142.8

Q ss_pred             cccccceeeeeeecceeecccceeEEEEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc
Q psy4578         578 TQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV  656 (860)
Q Consensus       578 ~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~  656 (860)
                      .+-.++..+..++.-+-.+.   +..+++....+... .-+....+.|.++.|+| ...+|++++. ..|+|||+...  
T Consensus       525 ~~vtWHrkGDYlatV~~~~~---~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kq--  597 (733)
T KOG0650|consen  525 RQVTWHRKGDYLATVMPDSG---NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQ--  597 (733)
T ss_pred             ceeeeecCCceEEEeccCCC---cceEEEEecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHH--
Confidence            34445555555544433322   22334444444333 33445678899999999 5566666554 58999999873  


Q ss_pred             ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578         657 SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  736 (860)
Q Consensus       657 ~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~  736 (860)
                       ..+..+......|.+++.+|.|.+ ++.|+.|+.               +..||+.-.  .++..++..|...+++++|
T Consensus       598 -elvKkL~tg~kwiS~msihp~GDn-li~gs~d~k---------------~~WfDldls--skPyk~lr~H~~avr~Va~  658 (733)
T KOG0650|consen  598 -ELVKKLLTGSKWISSMSIHPNGDN-LILGSYDKK---------------MCWFDLDLS--SKPYKTLRLHEKAVRSVAF  658 (733)
T ss_pred             -HHHHHHhcCCeeeeeeeecCCCCe-EEEecCCCe---------------eEEEEcccC--cchhHHhhhhhhhhhhhhh
Confidence             334555556678999999999997 778888887               888888754  2677788889999999999


Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCC--------CceeeEEeccCCCc----eEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4578         737 NPYSEYILATGSADKTVALWDLRN--------LKLKLHSFESHKDE----IFQVQWSPHNETILASSGTDRRLHVW  800 (860)
Q Consensus       737 sp~g~~llasgs~Dg~I~IWDl~~--------~~~~~~~~~~h~~~----V~~l~fsp~g~~lL~tgs~Dg~I~iW  800 (860)
                      |+.-. ++++|+.||++.||.-+-        .-.++..+.+|...    |..+.|+|...+ |+++|.||+|++|
T Consensus       659 H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~tirlf  732 (733)
T KOG0650|consen  659 HKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTIRLF  732 (733)
T ss_pred             ccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce-EEecCCCceEEee
Confidence            99888 799999999999985431        12356778888765    899999999998 7899999999998

>KOG0644|consensus

Probab=99.12  E-value=1.9e-10  Score=130.69  Aligned_cols=228  Identities=20%  Similarity=0.319  Sum_probs=148.8

Q ss_pred             eecceeecccceeEEEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC
Q psy4578         589 FKQGYFKGTHHIEEVMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT  667 (860)
Q Consensus       589 l~~G~~~Gs~~l~~il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~  667 (860)
                      -..|++..++.....+.+|...... +....+|.+.|++++.+. ++.++++++.|..|++|.+.++   .++..+.+|+
T Consensus       199 Drtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~~---~pvsvLrght  274 (1113)
T KOG0644|consen  199 DRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPDG---APVSVLRGHT  274 (1113)
T ss_pred             ccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCCC---chHHHHhccc
Confidence            3346555454555555566555544 555667889999999996 7788999999999999999984   6788889999


Q ss_pred             CCeeEEEEccCCCeEEEEEeCCCceeeecccccc--------cCCC-cE-------EEEeC-CCCCCCCCeeeecCCCCC
Q psy4578         668 AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE--------NYDQ-KL-------MIWDT-RSHNVSKPSHTVDAHTAE  730 (860)
Q Consensus       668 ~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~--------~~dg-~I-------~iwDl-~~~~~~~~~~~~~~h~~~  730 (860)
                      +.|++++|+|     ..+.+.||++.+|+.+...        ..++ .+       ..|+- .++.     .......-.
T Consensus       275 gavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs-----~d~ea~n~e  344 (1113)
T KOG0644|consen  275 GAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS-----RDGEARNHE  344 (1113)
T ss_pred             cceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc-----CCcccccch
Confidence            9999999999     3477889995555544210        0000 00       00000 0000     000000111


Q ss_pred             eEEEEEcCCCC----------cEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4578         731 VNCLSFNPYSE----------YILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW  800 (860)
Q Consensus       731 I~sl~~sp~g~----------~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iW  800 (860)
                      +-+++|..++-          .+.+++-.+-.+++|++-++.. .+...+|...+..+.++|....+..++|.||...||
T Consensus       345 ~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l-~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iw  423 (1113)
T KOG0644|consen  345 FEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL-LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIW  423 (1113)
T ss_pred             hhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchh-hhhhcccccceeeeeecCCCcHhhhhccCCCceEee
Confidence            22333333322          2233444556688899888876 788889999999999999998888899999999999


Q ss_pred             ECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEE
Q psy4578         801 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI  845 (860)
Q Consensus       801 dl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Ll  845 (860)
                      |+-.+...+            .+. .+| +.+.+.+||++|..++
T Consensus       424 di~eg~pik------------~y~-~gh-~kl~d~kFSqdgts~~  454 (1113)
T KOG0644|consen  424 DIWEGIPIK------------HYF-IGH-GKLVDGKFSQDGTSIA  454 (1113)
T ss_pred             ecccCCcce------------eee-ccc-ceeeccccCCCCceEe
Confidence            998744322            222 343 5566778888887543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=1.1e-09  Score=125.89  Aligned_cols=195  Identities=13%  Similarity=0.056  Sum_probs=123.5

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEE-EeCCCcEEEEE--cCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGS-VADDQKLMIWD--TRSHNVSKPSHTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~las-gs~DG~I~IWd--~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  679 (860)
                      .++.|+...+....+....+...+++|+| +++.++. .+.+|.+.||.  +.++    ....+..+...+.+..|+|+|
T Consensus       229 ~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG  303 (429)
T PRK01742        229 QLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGG----TPSQLTSGAGNNTEPSWSPDG  303 (429)
T ss_pred             EEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEEEEEECCCC----CeEeeccCCCCcCCEEECCCC
Confidence            35666655443322222233455789999 5655554 45788877764  4442    234455667778899999999


Q ss_pred             CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578         680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR  759 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~  759 (860)
                      +.+++++..+|.               ..+|++.....  ....+ .+..  .+..|+|+|++ ++.++.++ +.+||+.
T Consensus       304 ~~i~f~s~~~g~---------------~~I~~~~~~~~--~~~~l-~~~~--~~~~~SpDG~~-ia~~~~~~-i~~~Dl~  361 (429)
T PRK01742        304 QSILFTSDRSGS---------------PQVYRMSASGG--GASLV-GGRG--YSAQISADGKT-LVMINGDN-VVKQDLT  361 (429)
T ss_pred             CEEEEEECCCCC---------------ceEEEEECCCC--CeEEe-cCCC--CCccCCCCCCE-EEEEcCCC-EEEEECC
Confidence            987666666676               67776654321  11222 3333  45789999997 55555554 6669998


Q ss_pred             CCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc
Q psy4578         760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP  839 (860)
Q Consensus       760 ~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp  839 (860)
                      ++...  .+..+ ....++.|+|+|+. ++.++.+|.+.+|++....            ......+.+|.+.+...+|+|
T Consensus       362 ~g~~~--~lt~~-~~~~~~~~sPdG~~-i~~~s~~g~~~~l~~~~~~------------G~~~~~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        362 SGSTE--VLSST-FLDESPSISPNGIM-IIYSSTQGLGKVLQLVSAD------------GRFKARLPGSDGQVKFPAWSP  425 (429)
T ss_pred             CCCeE--EecCC-CCCCCceECCCCCE-EEEEEcCCCceEEEEEECC------------CCceEEccCCCCCCCCcccCC
Confidence            87642  22211 13356789999986 7777788888888764311            234555567788889999998


Q ss_pred             C
Q psy4578         840 N  840 (860)
Q Consensus       840 d  840 (860)
                      -
T Consensus       426 ~  426 (429)
T PRK01742        426 Y  426 (429)
T ss_pred             C
Confidence            5

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.11  E-value=5e-09  Score=120.01  Aligned_cols=212  Identities=14%  Similarity=0.170  Sum_probs=136.3

Q ss_pred             eEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCC---CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578         601 EEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADD---QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  677 (860)
Q Consensus       601 ~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~D---G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp  677 (860)
                      ...+++.+........+..+...+.+.+|+| +++.++.++.+   ..|.+||+.++..    ..+..+.+.+.+++|+|
T Consensus       169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~----~~~~~~~~~~~~~~~sp  243 (417)
T TIGR02800       169 RYELQVADYDGANPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQR----EKVASFPGMNGAPAFSP  243 (417)
T ss_pred             cceEEEEcCCCCCCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCE----EEeecCCCCccceEECC
Confidence            3345555555555566666666789999999 56666665543   4799999987532    22334456677899999


Q ss_pred             CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC--cEEE
Q psy4578         678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK--TVAL  755 (860)
Q Consensus       678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg--~I~I  755 (860)
                      +|+.++++.+.++.             ..|.+||+.++.    ...+..+........|+|+|+++++++..+|  .|.+
T Consensus       244 Dg~~l~~~~~~~~~-------------~~i~~~d~~~~~----~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~  306 (417)
T TIGR02800       244 DGSKLAVSLSKDGN-------------PDIYVMDLDGKQ----LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYM  306 (417)
T ss_pred             CCCEEEEEECCCCC-------------ccEEEEECCCCC----EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEE
Confidence            99987666655442             348888887652    2233344445567899999997555555444  4777


Q ss_pred             EeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCC---cEEEEECCCCCcccccccccCCCCccEEEecCccCce
Q psy4578         756 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR---RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI  832 (860)
Q Consensus       756 WDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg---~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I  832 (860)
                      ||+.++..  ..+..+........|+|+|++ ++.++.++   .|.+||+.+....            .+   .. ....
T Consensus       307 ~d~~~~~~--~~l~~~~~~~~~~~~spdg~~-i~~~~~~~~~~~i~~~d~~~~~~~------------~l---~~-~~~~  367 (417)
T TIGR02800       307 MDADGGEV--RRLTFRGGYNASPSWSPDGDL-IAFVHREGGGFNIAVMDLDGGGER------------VL---TD-TGLD  367 (417)
T ss_pred             EECCCCCE--EEeecCCCCccCeEECCCCCE-EEEEEccCCceEEEEEeCCCCCeE------------Ec---cC-CCCC
Confidence            78876653  334445566778899999987 44555444   7888887763211            01   11 1122


Q ss_pred             EEEEEccCCCeEEEEEeCCCe
Q psy4578         833 SDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       833 ~~i~~spdg~~Llasgs~Dg~  853 (860)
                      ....|+|+|++++++...++.
T Consensus       368 ~~p~~spdg~~l~~~~~~~~~  388 (417)
T TIGR02800       368 ESPSFAPNGRMILYATTRGGR  388 (417)
T ss_pred             CCceECCCCCEEEEEEeCCCc
Confidence            345799999987777666544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=7.5e-09  Score=119.26  Aligned_cols=170  Identities=15%  Similarity=0.156  Sum_probs=114.6

Q ss_pred             cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee
Q psy4578         645 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV  724 (860)
Q Consensus       645 ~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~  724 (860)
                      .|.+||....    ....+..|...+.+.+|+|||+.++.+...++             +..|.+||+.++..    ..+
T Consensus       183 ~l~~~d~dg~----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g-------------~~~i~~~dl~~g~~----~~l  241 (435)
T PRK05137        183 RLAIMDQDGA----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANG-------------RPRVYLLDLETGQR----ELV  241 (435)
T ss_pred             EEEEECCCCC----CcEEEecCCCCeEeeEECCCCCEEEEEEecCC-------------CCEEEEEECCCCcE----EEe
Confidence            6888887542    23445567889999999999997555443322             24599999987632    234


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEeeCCCc--EEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCC--cEEEE
Q psy4578         725 DAHTAEVNCLSFNPYSEYILATGSADKT--VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR--RLHVW  800 (860)
Q Consensus       725 ~~h~~~I~sl~~sp~g~~llasgs~Dg~--I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg--~I~iW  800 (860)
                      ..+.+.+.+.+|+|+|+.++++.+.+|.  |.+||+.++..  ..+..+........|+|+|+.++++...+|  .|++|
T Consensus       242 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~--~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~  319 (435)
T PRK05137        242 GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT--TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM  319 (435)
T ss_pred             ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce--EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence            4556677889999999986677777766  77778887663  455556666778999999997555444444  57777


Q ss_pred             ECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         801 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       801 dl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      |+.....            ..+   ..+.+.+....|+|||++++++...++
T Consensus       320 d~~g~~~------------~~l---t~~~~~~~~~~~SpdG~~ia~~~~~~~  356 (435)
T PRK05137        320 NADGSNP------------RRI---SFGGGRYSTPVWSPRGDLIAFTKQGGG  356 (435)
T ss_pred             ECCCCCe------------EEe---ecCCCcccCeEECCCCCEEEEEEcCCC
Confidence            7654221            111   112344667889999998776654444

>KOG1963|consensus

Probab=99.10  E-value=1.4e-08  Score=117.46  Aligned_cols=231  Identities=14%  Similarity=0.215  Sum_probs=144.6

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC-CCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS-HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~-~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      |.-.+++.+++| +++++|+|..||.|.+|.--. .........+.-|...|++++|+++|.+ +.+||..|.+..|...
T Consensus       204 Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~-LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  204 HTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY-LLSGGREGVLVLWQLE  281 (792)
T ss_pred             hcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce-EeecccceEEEEEeec
Confidence            334589999999 899999999999999996543 1122334566778899999999999997 8999999999999887


Q ss_pred             ccc--------------------------cCCCcEEEEeCCCCCCCCCeeeecC--------CCCCeEEEEEcCCCCcEE
Q psy4578         699 EEE--------------------------NYDQKLMIWDTRSHNVSKPSHTVDA--------HTAEVNCLSFNPYSEYIL  744 (860)
Q Consensus       699 ~~~--------------------------~~dg~I~iwDl~~~~~~~~~~~~~~--------h~~~I~sl~~sp~g~~ll  744 (860)
                      +.+                          ..|++|.+....+......+..+..        ..+-.+.++++|.-+ .+
T Consensus       282 T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-~~  360 (792)
T KOG1963|consen  282 TGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-SL  360 (792)
T ss_pred             CCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC-ce
Confidence            762                          2466777765533211111111111        122334455555222 24


Q ss_pred             EEeeCCCcEEEEeCCCCce-------------------------------------------------------------
Q psy4578         745 ATGSADKTVALWDLRNLKL-------------------------------------------------------------  763 (860)
Q Consensus       745 asgs~Dg~I~IWDl~~~~~-------------------------------------------------------------  763 (860)
                      +-.+..|.|.+||+-+...                                                             
T Consensus       361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~  440 (792)
T KOG1963|consen  361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN  440 (792)
T ss_pred             eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence            4444455555555422110                                                             


Q ss_pred             ------eeEEeccCCCceEEEEEcCCCCC-EEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEE
Q psy4578         764 ------KLHSFESHKDEIFQVQWSPHNET-ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  836 (860)
Q Consensus       764 ------~~~~~~~h~~~V~~l~fsp~g~~-lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~  836 (860)
                            .......|...+...++.+..+. .++|+|.||.+++|-+...+.....    +....+.....-|..++++.+
T Consensus       441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~----~s~W~c~~i~sy~k~~i~a~~  516 (792)
T KOG1963|consen  441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKK----SSNWTCKAIGSYHKTPITALC  516 (792)
T ss_pred             cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcC----ccceEEeeeeccccCcccchh
Confidence                  01122346666666666543322 5889999999999998654433221    122344444445889999999


Q ss_pred             EccCCCeEEEEEeCCCeEee-ccC
Q psy4578         837 WNPNEPWVICSVSEDNIMQK-PFK  859 (860)
Q Consensus       837 ~spdg~~Llasgs~Dg~IrI-~f~  859 (860)
                      |+.||. ++ +++.|++|.| +|.
T Consensus       517 fs~dGs-ll-a~s~~~~Itiwd~~  538 (792)
T KOG1963|consen  517 FSQDGS-LL-AVSFDDTITIWDYD  538 (792)
T ss_pred             hcCCCc-EE-EEecCCEEEEecCC
Confidence            999998 45 4555555554 664

>KOG2111|consensus

Probab=99.09  E-value=1.1e-08  Score=105.95  Aligned_cols=232  Identities=14%  Similarity=0.201  Sum_probs=148.3

Q ss_pred             eeeeeeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCC------CcEEEEEcCCCCcc
Q psy4578         584 LFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADD------QKLMIWDTRSHNVS  657 (860)
Q Consensus       584 l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~D------G~I~IWd~~~~~~~  657 (860)
                      .+++.-..++..+..+.-.+...+........+..+..-.+..+-|-.  +-+.++|+.+      .++.|||-..   .
T Consensus        11 vs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD~k---~   85 (346)
T KOG2111|consen   11 VSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDDLK---E   85 (346)
T ss_pred             EEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEeccc---C
Confidence            455555444445555555555555443333444444444566666643  3333444433      4699999433   3


Q ss_pred             cCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeec--CCCCCeEEEE
Q psy4578         658 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD--AHTAEVNCLS  735 (860)
Q Consensus       658 ~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~--~h~~~I~sl~  735 (860)
                      +++..+ ....+|.++.+.++  . +++.- .+.               |.||...+.  .+.+..+.  ......++++
T Consensus        86 ~~i~el-~f~~~I~~V~l~r~--r-iVvvl-~~~---------------I~VytF~~n--~k~l~~~et~~NPkGlC~~~  143 (346)
T KOG2111|consen   86 RCIIEL-SFNSEIKAVKLRRD--R-IVVVL-ENK---------------IYVYTFPDN--PKLLHVIETRSNPKGLCSLC  143 (346)
T ss_pred             cEEEEE-EeccceeeEEEcCC--e-EEEEe-cCe---------------EEEEEcCCC--hhheeeeecccCCCceEeec
Confidence            444444 34678999999863  2 34433 233               899988743  13333322  2233455554


Q ss_pred             EcCCCCcEEEEeeCCCcEEEEeCCCCce-eeEEeccCCCceEEEEEcCCCCCEEEEEECCCc-EEEEECCCCCccccccc
Q psy4578         736 FNPYSEYILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTED  813 (860)
Q Consensus       736 ~sp~g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~-I~iWdl~~~~~~~~~~~  813 (860)
                      -+.+...+..-|-.-|.|.|-|+..... +.....+|.+.|.|++.+-+|. ++||+|..|+ |||||..++...+....
T Consensus       144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RR  222 (346)
T KOG2111|consen  144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRR  222 (346)
T ss_pred             CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence            4444443333455679999999987664 3467889999999999999997 6999999987 89999999776554321


Q ss_pred             ccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         814 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       814 ~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                                  +.....|.+++|||++.+ +|..|+.|+++|
T Consensus       223 ------------G~d~A~iy~iaFSp~~s~-LavsSdKgTlHi  252 (346)
T KOG2111|consen  223 ------------GVDRADIYCIAFSPNSSW-LAVSSDKGTLHI  252 (346)
T ss_pred             ------------CCchheEEEEEeCCCccE-EEEEcCCCeEEE
Confidence                        123467999999999995 889999999997

>KOG4547|consensus

Probab=99.09  E-value=3.8e-09  Score=117.38  Aligned_cols=191  Identities=16%  Similarity=0.289  Sum_probs=143.9

Q ss_pred             ccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEc------c-------------CCCeEEEEEeCCCc
Q psy4578         631 LLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN------P-------------YSEYILATGSADKT  691 (860)
Q Consensus       631 p~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~s------p-------------~g~~llasgs~Dg~  691 (860)
                      |....++|....||.+++|+...++....+.....-.+..++..|.      |             .+...++-|..   
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~---   78 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP---   78 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC---
Confidence            3367889999999999999998865444343333345666777774      1             11122333333   


Q ss_pred             eeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccC
Q psy4578         692 QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH  771 (860)
Q Consensus       692 i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h  771 (860)
                                  .|.|.+|+...++. ....+-.+|.+.|.++.|+.+-.. |.+++.|+.+..|+...... ...+.+.
T Consensus        79 ------------~g~v~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~c-iyS~~ad~~v~~~~~~~~~~-~~~~~~~  143 (541)
T KOG4547|consen   79 ------------QGSVLLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLGC-IYSVGADLKVVYILEKEKVI-IRIWKEQ  143 (541)
T ss_pred             ------------CccEEEEEecCCeE-EEEEecCCCCCcceeeecccccCc-eEecCCceeEEEEeccccee-eeeeccC
Confidence                        44588999887643 233334679999999999988774 99999999999999999887 7888888


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccC-----CCeEEE
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN-----EPWVIC  846 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd-----g~~Lla  846 (860)
                      ...+.+++.+|||. ++++|+  +.|++||+.+              ...+..+.||.++|.++.|..+     |.+++.
T Consensus       144 ~~~~~sl~is~D~~-~l~~as--~~ik~~~~~~--------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLs  206 (541)
T KOG4547|consen  144 KPLVSSLCISPDGK-ILLTAS--RQIKVLDIET--------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLS  206 (541)
T ss_pred             CCccceEEEcCCCC-EEEecc--ceEEEEEccC--------------ceEEEEecCCCcceEEEEEEEeccccccceeee
Confidence            88999999999997 476665  7899999998              5667888999999999999887     888886


Q ss_pred             EEeCCCeEee
Q psy4578         847 SVSEDNIMQK  856 (860)
Q Consensus       847 sgs~Dg~IrI  856 (860)
                      +...+..+.+
T Consensus       207 sa~~~r~i~~  216 (541)
T KOG4547|consen  207 SAAAERGITV  216 (541)
T ss_pred             ccccccceeE
Confidence            6665554443

>KOG1272|consensus

Probab=99.08  E-value=3.9e-10  Score=121.28  Aligned_cols=210  Identities=18%  Similarity=0.341  Sum_probs=151.4

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      .+|+++....++. .+.....|..+.|-| .--+|++++..|.++.-|+.+|   +.+..+....+.+..++-+|-+. +
T Consensus       192 y~yvYD~~GtElH-Clk~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~G---klVa~~~t~~G~~~vm~qNP~Na-V  265 (545)
T KOG1272|consen  192 YVYVYDNNGTELH-CLKRHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTG---KLVASIRTGAGRTDVMKQNPYNA-V  265 (545)
T ss_pred             eEEEecCCCcEEe-ehhhcCchhhhcccc-hhheeeecccCCceEEEeechh---hhhHHHHccCCccchhhcCCccc-e
Confidence            3455555555544 344456899999998 5667889999999999999996   44556666678888999999877 6


Q ss_pred             EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc
Q psy4578         683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK  762 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~  762 (860)
                      +-+|...|+               |.+|...+.   .++..+..|.++|+++++.++|.| +||++.|..++|||++...
T Consensus       266 ih~GhsnGt---------------VSlWSP~sk---ePLvKiLcH~g~V~siAv~~~G~Y-MaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  266 IHLGHSNGT---------------VSLWSPNSK---EPLVKILCHRGPVSSIAVDRGGRY-MATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             EEEcCCCce---------------EEecCCCCc---chHHHHHhcCCCcceEEECCCCcE-EeecccccceeEeeecccc
Confidence            899998998               999998876   677788899999999999999996 9999999999999999987


Q ss_pred             eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578         763 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  842 (860)
Q Consensus       763 ~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~  842 (860)
                      . +.++.. ..+...+++|..|   ++++|....+.||.=......         .....+......++|.++.|.|-..
T Consensus       327 q-l~t~~t-p~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~s~---------~~~~pYm~H~~~~~V~~l~FcP~ED  392 (545)
T KOG1272|consen  327 Q-LHTYRT-PHPASNLSLSQKG---LLALSYGDHVQIWKDALKGSG---------HGETPYMNHRCGGPVEDLRFCPYED  392 (545)
T ss_pred             c-cceeec-CCCcccccccccc---ceeeecCCeeeeehhhhcCCC---------CCCcchhhhccCcccccceeccHHH
Confidence            5 444443 4566778888777   345666778999953321110         0011111111234788888888766


Q ss_pred             eEEEEEeCCC
Q psy4578         843 WVICSVSEDN  852 (860)
Q Consensus       843 ~Llasgs~Dg  852 (860)
                       ++..|-..|
T Consensus       393 -vLGIGH~~G  401 (545)
T KOG1272|consen  393 -VLGIGHAGG  401 (545)
T ss_pred             -eeeccccCC
Confidence             444444444

>KOG1963|consensus

Probab=99.08  E-value=8.3e-09  Score=119.27  Aligned_cols=227  Identities=21%  Similarity=0.242  Sum_probs=145.0

Q ss_pred             ccchhhhhhhhhcccceeeeEeeccCC--cEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc--------
Q psy4578         608 NKTRAQICQLLDKLRLLIDVAWHLLHE--SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP--------  677 (860)
Q Consensus       608 n~~~~~l~~l~~~~~~V~~v~~sp~~~--~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp--------  677 (860)
                      ...+..+..+.+|..++.++.+.|...  .++.+++.||.|++||...+.   .+.++.. ..++..+.+.|        
T Consensus        44 ~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~---Llkt~~~-~~~v~~~~~~~~~a~~s~~  119 (792)
T KOG1963|consen   44 TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE---LLKTFDN-NLPVHALVYKPAQADISAN  119 (792)
T ss_pred             cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE---EEEEEec-CCceeEEEechhHhCccce
Confidence            344555566667889999999998655  467799999999999998753   3333322 22232222211        


Q ss_pred             -----CCCeEEEEEeCCCc--eeeeccccc----------------------c-----cCCCcEEEEeCCCCCCCC-Cee
Q psy4578         678 -----YSEYILATGSADKT--QFEVEEEEE----------------------E-----NYDQKLMIWDTRSHNVSK-PSH  722 (860)
Q Consensus       678 -----~g~~llasgs~Dg~--i~~~~~~~~----------------------~-----~~dg~I~iwDl~~~~~~~-~~~  722 (860)
                           +....+.+++.+-.  .......+.                      +     .....+.+|+..++.... ...
T Consensus       120 ~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~  199 (792)
T KOG1963|consen  120 VYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRD  199 (792)
T ss_pred             eEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccch
Confidence                 11111111111110  000000000                      0     113346778777642101 111


Q ss_pred             eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC---CceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEE
Q psy4578         723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV  799 (860)
Q Consensus       723 ~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~---~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~i  799 (860)
                      .-..|+..++|.++||++++ +|+|..||.|.+|.--.   .....+.+.-|...|++++|+++|.+ |++||..|.+.+
T Consensus       200 ~~~~Htf~~t~~~~spn~~~-~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~-LlSGG~E~VLv~  277 (792)
T KOG1963|consen  200 ITVHHTFNITCVALSPNERY-LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY-LLSGGREGVLVL  277 (792)
T ss_pred             hhhhhcccceeEEeccccce-EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce-EeecccceEEEE
Confidence            22346777999999999995 99999999999996433   12225667789999999999999997 889999999999


Q ss_pred             EECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         800 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       800 Wdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |.+.+++..               -+..-.++|..+.++||+.+ .+....|+.|++
T Consensus       278 Wq~~T~~kq---------------fLPRLgs~I~~i~vS~ds~~-~sl~~~DNqI~l  318 (792)
T KOG1963|consen  278 WQLETGKKQ---------------FLPRLGSPILHIVVSPDSDL-YSLVLEDNQIHL  318 (792)
T ss_pred             EeecCCCcc---------------cccccCCeeEEEEEcCCCCe-EEEEecCceEEE
Confidence            999986521               12234678999999999995 555666666654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=1.4e-08  Score=116.85  Aligned_cols=210  Identities=12%  Similarity=0.118  Sum_probs=131.7

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEe-CC--CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVA-DD--QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs-~D--G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      +++.+........+..+...+....|+| +++.++..+ .+  ..|.+||+.++..    ..+....+.+....|+|+|+
T Consensus       181 l~~~d~~g~~~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~----~~l~~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        181 LQRSDYDGARAVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRR----EQITNFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEECCCCCCceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCE----EEccCCCCCcCCeEECCCCC
Confidence            4455555555555666777899999999 556555544 33  3688899987532    22223344556789999999


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC--cEEEEeC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK--TVALWDL  758 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg--~I~IWDl  758 (860)
                      .++++.+.+|.             ..|.+||+.++.    ...+..+........|+|+|+.+++++..+|  .|+++|+
T Consensus       256 ~la~~~~~~g~-------------~~Iy~~d~~~~~----~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~  318 (430)
T PRK00178        256 KLAFVLSKDGN-------------PEIYVMDLASRQ----LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV  318 (430)
T ss_pred             EEEEEEccCCC-------------ceEEEEECCCCC----eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence            87666665552             348888988753    2234445556677899999998666655554  4777787


Q ss_pred             CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCC--cEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEE
Q psy4578         759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  836 (860)
Q Consensus       759 ~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg--~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~  836 (860)
                      .++........  ........|+|+|+.++++...++  .|.+||+.++....            +. .   ........
T Consensus       319 ~~g~~~~lt~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~------------lt-~---~~~~~~p~  380 (430)
T PRK00178        319 NGGRAERVTFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI------------LT-D---TSLDESPS  380 (430)
T ss_pred             CCCCEEEeecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE------------cc-C---CCCCCCce
Confidence            77664222222  223345789999998555554444  57788887643211            11 0   11112457


Q ss_pred             EccCCCeEEEEEeCCCe
Q psy4578         837 WNPNEPWVICSVSEDNI  853 (860)
Q Consensus       837 ~spdg~~Llasgs~Dg~  853 (860)
                      |+|||+.++.+...++.
T Consensus       381 ~spdg~~i~~~~~~~g~  397 (430)
T PRK00178        381 VAPNGTMLIYATRQQGR  397 (430)
T ss_pred             ECCCCCEEEEEEecCCc
Confidence            99999988777766554

>KOG0771|consensus

Probab=99.05  E-value=3.3e-09  Score=113.55  Aligned_cols=201  Identities=15%  Similarity=0.173  Sum_probs=139.9

Q ss_pred             eeeeeeecceeecccceeEEEEeec-cchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeee
Q psy4578         584 LFLNFFKQGYFKGTHHIEEVMYLEN-KTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHT  662 (860)
Q Consensus       584 l~~~ll~~G~~~Gs~~l~~il~l~n-~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~  662 (860)
                      ..+.+...|....++.....+.+|+ .....+.....|++.|.++.|+| ++.++++.+.| ..+||+.+++........
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            3444444555555555555666676 55566777888999999999998 89999999999 999999998632221111


Q ss_pred             ccCCCCCeeEEEEccCC---Ce-EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCC--CCeeeecCCCCCeEEEEE
Q psy4578         663 VDAHTAEVNCLSFNPYS---EY-ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVS--KPSHTVDAHTAEVNCLSF  736 (860)
Q Consensus       663 ~~~h~~~V~~l~~sp~g---~~-llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~--~~~~~~~~h~~~I~sl~~  736 (860)
                       .........+.|+.++   .. +++.....+.               |+.||+......  -.......-...|++++.
T Consensus       226 -~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~---------------v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V  289 (398)
T KOG0771|consen  226 -FSKDEMFSSCRFSVDNAQETLRLAASQFPGGG---------------VRLCDISLWSGSNFLRLRKKIKRFKSISSLAV  289 (398)
T ss_pred             -cccchhhhhceecccCCCceEEEEEecCCCCc---------------eeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence             2234456778888766   22 2222222333               555555432110  111122222357999999


Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         737 NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       737 sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      +++|++ +|.|+.||.|.|++..+.+.....-+.|...|+.+.|+|+.++ +++.+.|..+.+..+.-
T Consensus       290 S~dGkf-~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  290 SDDGKF-LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY-LASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cCCCcE-EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc-ccccccCCceeEEEEee
Confidence            999995 9999999999999999988755556689999999999999997 77888899988887765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=1.8e-08  Score=116.20  Aligned_cols=210  Identities=15%  Similarity=0.164  Sum_probs=127.2

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEE-eCCC--cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSV-ADDQ--KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasg-s~DG--~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      +++.+........+......+.+..|+| +++.++.. ..+|  .|.+||+.+++. ..+.   ...+.....+|+|+|+
T Consensus       200 l~i~d~dG~~~~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt---~~~g~~~~~~wSPDG~  274 (448)
T PRK04792        200 LMIADYDGYNEQMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVR-EKVT---SFPGINGAPRFSPDGK  274 (448)
T ss_pred             EEEEeCCCCCceEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCe-EEec---CCCCCcCCeeECCCCC
Confidence            3434444444445556677899999999 55555544 3444  578888877532 1222   2233445789999999


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc--EEEEeC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT--VALWDL  758 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~--I~IWDl  758 (860)
                      .++++.+.+|.             ..|.+||+.+++    ...+..+.......+|+|+|+++++++..+|.  |.++|+
T Consensus       275 ~La~~~~~~g~-------------~~Iy~~dl~tg~----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl  337 (448)
T PRK04792        275 KLALVLSKDGQ-------------PEIYVVDIATKA----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL  337 (448)
T ss_pred             EEEEEEeCCCC-------------eEEEEEECCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            87777766664             237778887652    23344455566788999999986666655555  666677


Q ss_pred             CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcE--EEEECCCCCcccccccccCCCCccEEEecCccCceEEEE
Q psy4578         759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL--HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  836 (860)
Q Consensus       759 ~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I--~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~  836 (860)
                      .++......+.  .......+|+|+|++++++...++..  .++|+.++....            +   ... .......
T Consensus       338 ~~g~~~~Lt~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~------------l---t~~-~~d~~ps  399 (448)
T PRK04792        338 ASGKVSRLTFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV------------L---TST-RLDESPS  399 (448)
T ss_pred             CCCCEEEEecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE------------c---cCC-CCCCCce
Confidence            76654222222  22334578999999866665555544  445665532211            1   110 0112347


Q ss_pred             EccCCCeEEEEEeCCCe
Q psy4578         837 WNPNEPWVICSVSEDNI  853 (860)
Q Consensus       837 ~spdg~~Llasgs~Dg~  853 (860)
                      |+|||+.++.+...++.
T Consensus       400 ~spdG~~I~~~~~~~g~  416 (448)
T PRK04792        400 VAPNGTMVIYSTTYQGK  416 (448)
T ss_pred             ECCCCCEEEEEEecCCc
Confidence            99999988877766654

>KOG0280|consensus

Probab=99.03  E-value=2e-08  Score=102.92  Aligned_cols=189  Identities=14%  Similarity=0.197  Sum_probs=132.6

Q ss_pred             ccceeeeEeec--cCCc-EEEEEeCCCcEEEEEcCCCCcccCeeeccCC---CCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         621 LRLLIDVAWHL--LHES-LFGSVADDQKLMIWDTRSHNVSKPSHTVDAH---TAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       621 ~~~V~~v~~sp--~~~~-~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h---~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      ...+..+.|+.  .++. .++-+..+|.|.++..........+..+...   .....++.|++.+.. ++++..+|.   
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~-i~vs~s~G~---  144 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTK-IFVSDSRGS---  144 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCce-EEEEcCCCc---
Confidence            45688888863  3455 5677788999999987542211111111111   123567889988886 777777777   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeE-EeccCCC
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH-SFESHKD  773 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~-~~~~h~~  773 (860)
                                  +.+-+.... ..+.+...+.|..++....|+.....++.+|+.||.+..||+|-....+. ....|..
T Consensus       145 ------------~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~  211 (339)
T KOG0280|consen  145 ------------ISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS  211 (339)
T ss_pred             ------------EEEEeccee-eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec
Confidence                        664444433 12455577899999999999988888999999999999999994443233 2556889


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccC
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN  840 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd  840 (860)
                      .|.++.-+|..++.++||+.|-+|++||.++........              .-.+.|+.+.++|.
T Consensus       212 GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~--------------~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  212 GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA--------------KVGGGVWRIKHHPE  264 (339)
T ss_pred             ceEEEecCCCCCceEEEeccccceeeeehhcccCccccC--------------ccccceEEEEecch
Confidence            999999998877789999999999999999755432111              11366777777773

>KOG3881|consensus

Probab=99.02  E-value=5.5e-09  Score=110.68  Aligned_cols=169  Identities=21%  Similarity=0.280  Sum_probs=137.0

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCC--CcEEEEEcCCCCcccCeeeccC---------CCCCeeEEEEccC-CCeEEEE
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADD--QKLMIWDTRSHNVSKPSHTVDA---------HTAEVNCLSFNPY-SEYILAT  685 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~D--G~I~IWd~~~~~~~~~~~~~~~---------h~~~V~~l~~sp~-g~~llas  685 (860)
                      ...+..+..+.-++....++++|+..  ..+.|||++...   .+..-+.         -+-.++++.|-+. ..+.|++
T Consensus       145 la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~---qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat  221 (412)
T KOG3881|consen  145 LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK---QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFAT  221 (412)
T ss_pred             eecCCceeeeccCCCCCceEecCchhcccceeeeecccce---eeeeccCCCCccccceeeeeeccceecCCCCCceEEE
Confidence            34446788888888788899999998  889999998742   1211111         1235678889874 1456999


Q ss_pred             EeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceee
Q psy4578         686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL  765 (860)
Q Consensus       686 gs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~  765 (860)
                      ++.-+.               +++||.+.+.  +++..+.--...++++...|.+++ +++|..-|.+..||++.+....
T Consensus       222 ~T~~hq---------------vR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~-Iy~gn~~g~l~~FD~r~~kl~g  283 (412)
T KOG3881|consen  222 ITRYHQ---------------VRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNF-IYTGNTKGQLAKFDLRGGKLLG  283 (412)
T ss_pred             Eeccee---------------EEEecCcccC--cceeEeccccCcceeeeecCCCcE-EEEecccchhheecccCceeec
Confidence            998887               9999999763  778888877889999999999996 8899999999999999999856


Q ss_pred             EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         766 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       766 ~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      ..+.+..+.++++..+|.++. +++||-|..+||+|+.+....
T Consensus       284 ~~~kg~tGsirsih~hp~~~~-las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  284 CGLKGITGSIRSIHCHPTHPV-LASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             cccCCccCCcceEEEcCCCce-EEeeccceeEEEeecccchhh
Confidence            668899999999999999984 999999999999999985443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=1.8e-08  Score=115.73  Aligned_cols=196  Identities=10%  Similarity=0.072  Sum_probs=119.9

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCC--cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQ--KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG--~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      +++++...++...+....+.+.++.|+|++..++++.+.+|  .|.+||+.++..    ..+..+...+....|+|+|+.
T Consensus       225 i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~----~~lt~~~~~~~~~~wSPDG~~  300 (429)
T PRK03629        225 LVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI----RQVTDGRSNNTEPTWFPDSQN  300 (429)
T ss_pred             EEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE----EEccCCCCCcCceEECCCCCE
Confidence            44555544444444334445667899995444444555565  488889887432    333344556788999999998


Q ss_pred             EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC--cEEEEeCC
Q psy4578         682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK--TVALWDLR  759 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg--~I~IWDl~  759 (860)
                      ++.+...++.             ..|.++|+.++.    ...+..+.....+..|+|+|+++++++..++  .|.+||+.
T Consensus       301 I~f~s~~~g~-------------~~Iy~~d~~~g~----~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~  363 (429)
T PRK03629        301 LAYTSDQAGR-------------PQVYKVNINGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  363 (429)
T ss_pred             EEEEeCCCCC-------------ceEEEEECCCCC----eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence            6555544443             125555665542    2233334445667899999997555554443  48889998


Q ss_pred             CCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCc---EEEEECCCCCcccccccccCCCCccEEEecCccCceEEEE
Q psy4578         760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR---LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  836 (860)
Q Consensus       760 ~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~---I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~  836 (860)
                      ++..  ..+... .......|+|||+. ++.++.++.   +.++++..               .....+.+|.+.+...+
T Consensus       364 ~g~~--~~Lt~~-~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~G---------------~~~~~l~~~~~~~~~p~  424 (429)
T PRK03629        364 TGGV--QVLTDT-FLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTDG---------------RFKARLPATDGQVKFPA  424 (429)
T ss_pred             CCCe--EEeCCC-CCCCCceECCCCCE-EEEEEcCCCceEEEEEECCC---------------CCeEECccCCCCcCCcc
Confidence            8764  333321 23346789999997 555555543   66667643               22334446777888899


Q ss_pred             Ecc
Q psy4578         837 WNP  839 (860)
Q Consensus       837 ~sp  839 (860)
                      |+|
T Consensus       425 Wsp  427 (429)
T PRK03629        425 WSP  427 (429)
T ss_pred             cCC
Confidence            987

>KOG1272|consensus

Probab=98.99  E-value=4.3e-10  Score=120.92  Aligned_cols=193  Identities=20%  Similarity=0.365  Sum_probs=145.6

Q ss_pred             ccceeeeeeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe
Q psy4578         581 DLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS  660 (860)
Q Consensus       581 D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~  660 (860)
                      +|.-+++.+..|.-.|.    ....  +..+..+..-+.-...|.++.|-- +..++|++ ....+.|||-..    ..+
T Consensus       136 ~ytrnGrhlllgGrKGH----lAa~--Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~~G----tEl  203 (545)
T KOG1272|consen  136 DYTRNGRHLLLGGRKGH----LAAF--DWVTKKLHFEINVMETVRDVTFLH-NEQFFAVA-QKKYVYVYDNNG----TEL  203 (545)
T ss_pred             eecCCccEEEecCCccc----eeee--ecccceeeeeeehhhhhhhhhhhc-chHHHHhh-hhceEEEecCCC----cEE
Confidence            45555555544433332    2222  233455555555567899999985 56666665 456899999764    334


Q ss_pred             eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCC
Q psy4578         661 HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS  740 (860)
Q Consensus       661 ~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g  740 (860)
                      ..++.| ..|..+.|-|. .++|++++..|.               ++--|+.++   +.+..+....+.+..++-+|-+
T Consensus       204 HClk~~-~~v~rLeFLPy-HfLL~~~~~~G~---------------L~Y~DVS~G---klVa~~~t~~G~~~vm~qNP~N  263 (545)
T KOG1272|consen  204 HCLKRH-IRVARLEFLPY-HFLLVAASEAGF---------------LKYQDVSTG---KLVASIRTGAGRTDVMKQNPYN  263 (545)
T ss_pred             eehhhc-Cchhhhcccch-hheeeecccCCc---------------eEEEeechh---hhhHHHHccCCccchhhcCCcc
Confidence            555544 46889999994 468999998887               888999998   5566666677888999999988


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         741 EYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       741 ~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      . ++-+|..+|+|.+|....... +..+.+|.++|.++++.++|++ ++|+|.|..++|||+++....
T Consensus       264 a-Vih~GhsnGtVSlWSP~skeP-LvKiLcH~g~V~siAv~~~G~Y-MaTtG~Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  264 A-VIHLGHSNGTVSLWSPNSKEP-LVKILCHRGPVSSIAVDRGGRY-MATTGLDRKVKIWDLRNFYQL  328 (545)
T ss_pred             c-eEEEcCCCceEEecCCCCcch-HHHHHhcCCCcceEEECCCCcE-EeecccccceeEeeecccccc
Confidence            7 799999999999999988776 6777789999999999999986 899999999999999986543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=2.9e-08  Score=114.04  Aligned_cols=172  Identities=10%  Similarity=0.124  Sum_probs=108.1

Q ss_pred             cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee
Q psy4578         645 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV  724 (860)
Q Consensus       645 ~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~  724 (860)
                      .|.+||...    .....+..+...+.+.+|+|+|+.++.+...++             ...|.+||+.++..    ..+
T Consensus       177 ~L~~~D~dG----~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~-------------~~~I~~~dl~~g~~----~~l  235 (427)
T PRK02889        177 QLQISDADG----QNAQSALSSPEPIISPAWSPDGTKLAYVSFESK-------------KPVVYVHDLATGRR----RVV  235 (427)
T ss_pred             EEEEECCCC----CCceEeccCCCCcccceEcCCCCEEEEEEccCC-------------CcEEEEEECCCCCE----EEe
Confidence            566666533    222344466788999999999997544443322             23499999987632    223


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC--CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEEC
Q psy4578         725 DAHTAEVNCLSFNPYSEYILATGSADKTVALWDL--RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL  802 (860)
Q Consensus       725 ~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl--~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl  802 (860)
                      ....+.+.+.+|+|+|+.++++.+.+|...||.+  .++.  ...+..+........|+|||+.+++++..+|...+|.+
T Consensus       236 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~  313 (427)
T PRK02889        236 ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG--LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRM  313 (427)
T ss_pred             ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC--cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEE
Confidence            3334556789999999986667788888777754  4433  44555555666778999999986655555677777776


Q ss_pred             CCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         803 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      .....          ....+. ..  .......+|+|||++++.++..++
T Consensus       314 ~~~~g----------~~~~lt-~~--g~~~~~~~~SpDG~~Ia~~s~~~g  350 (427)
T PRK02889        314 PASGG----------AAQRVT-FT--GSYNTSPRISPDGKLLAYISRVGG  350 (427)
T ss_pred             ECCCC----------ceEEEe-cC--CCCcCceEECCCCCEEEEEEccCC
Confidence            43110          011111 11  122345789999998776665554

>KOG2321|consensus

Probab=98.97  E-value=1e-08  Score=113.02  Aligned_cols=197  Identities=21%  Similarity=0.304  Sum_probs=139.3

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY  703 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~  703 (860)
                      -.+++++..+..+++.|+. ..|.-++++.|.   -+..+....+.+++|..++... |+++|+.+|.            
T Consensus       136 GRDm~y~~~scDly~~gsg-~evYRlNLEqGr---fL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~------------  198 (703)
T KOG2321|consen  136 GRDMKYHKPSCDLYLVGSG-SEVYRLNLEQGR---FLNPFETDSGELNVVSINEEHG-LLACGTEDGV------------  198 (703)
T ss_pred             CccccccCCCccEEEeecC-cceEEEEccccc---cccccccccccceeeeecCccc-eEEecccCce------------
Confidence            3466666555566665554 478888998864   4455555668999999999776 7999999998            


Q ss_pred             CCcEEEEeCCCCCCCCCe---eeecCCCC-----CeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCce
Q psy4578         704 DQKLMIWDTRSHNVSKPS---HTVDAHTA-----EVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEI  775 (860)
Q Consensus       704 dg~I~iwDl~~~~~~~~~---~~~~~h~~-----~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V  775 (860)
                         |..||.++......+   ..+..|.+     .|+++.|+.+|-. +++|+.+|.|.|||+++....+..-.+...+|
T Consensus       199 ---VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi  274 (703)
T KOG2321|consen  199 ---VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-VAVGTSTGSVLIYDLRASKPLLVKDHGYELPI  274 (703)
T ss_pred             ---EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee-EEeeccCCcEEEEEcccCCceeecccCCccce
Confidence               999999876322211   12233444     3999999999886 99999999999999999887444444445689


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      ..+.|.+.+..--+...+...++|||-.+++....+               .....+.++|+-|++. ++.++.+++.+.
T Consensus       275 ~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asi---------------Ept~~lND~C~~p~sG-m~f~Ane~~~m~  338 (703)
T KOG2321|consen  275 KKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASI---------------EPTSDLNDFCFVPGSG-MFFTANESSKMH  338 (703)
T ss_pred             eeecccccCCCceEEecchHHhhhcccccCCceeec---------------cccCCcCceeeecCCc-eEEEecCCCcce
Confidence            999998763221334445678999998885543222               2345689999999988 566887777665


Q ss_pred             ec
Q psy4578         856 KP  857 (860)
Q Consensus       856 I~  857 (860)
                      .-
T Consensus       339 ~y  340 (703)
T KOG2321|consen  339 TY  340 (703)
T ss_pred             eE
Confidence            43

>KOG0280|consensus

Probab=98.97  E-value=6.1e-09  Score=106.57  Aligned_cols=201  Identities=18%  Similarity=0.166  Sum_probs=144.3

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY  703 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~  703 (860)
                      -.++.|++ .+.-++++..+|.+.+-+.... ..+.++..+.|...++...|+...+.++.+|++||.            
T Consensus       124 ~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~------------  189 (339)
T KOG0280|consen  124 ALSLDIST-SGTKIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS------------  189 (339)
T ss_pred             eeEEEeec-cCceEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCceEEecCCCce------------
Confidence            35778887 6677888889999985544332 234456788999999999999888889999999999            


Q ss_pred             CCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCC
Q psy4578         704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH  783 (860)
Q Consensus       704 dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~  783 (860)
                         +..||++.+.. ..-...+.|+..|.++.-+|-..+.++||+.|..|++||.|+...++..-. -.+.|+.+.++|.
T Consensus       190 ---l~~~D~R~p~~-~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  190 ---LSCWDIRIPKT-FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPE  264 (339)
T ss_pred             ---EEEEEecCCcc-eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecch
Confidence               99999995431 222335679999999999987777899999999999999997766554433 4589999999996


Q ss_pred             CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe-CCCe
Q psy4578         784 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS-EDNI  853 (860)
Q Consensus       784 g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs-~Dg~  853 (860)
                      -...+..++--+-.+|-+.......         ........+.|.+-+..-.|..... +++||+ .|+.
T Consensus       265 ~~~~lL~~CMh~G~ki~~~~~~~~e---------~~~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~  325 (339)
T KOG0280|consen  265 IFHRLLAACMHNGAKILDSSDKVLE---------FQIVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKK  325 (339)
T ss_pred             hhhHHHHHHHhcCceEEEecccccc---------hheeeeccccccceeeccccccccc-eeeeeeccccc
Confidence            5433333443444666666553322         1124556678888888888866544 566654 4444

>KOG1334|consensus

Probab=98.96  E-value=2.6e-09  Score=115.69  Aligned_cols=256  Identities=12%  Similarity=0.193  Sum_probs=166.6

Q ss_pred             eeeeeeecceee--cccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCC-cEEEEEeCCCcEEEEEcCCCCcccCe
Q psy4578         584 LFLNFFKQGYFK--GTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHE-SLFGSVADDQKLMIWDTRSHNVSKPS  660 (860)
Q Consensus       584 l~~~ll~~G~~~--Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~-~~lasgs~DG~I~IWd~~~~~~~~~~  660 (860)
                      -.+.+...|...  |+.+...++|.|.....++.-.-+|...|..-.|-|..+ .-+++++.||.+++=.+.........
T Consensus       146 ntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t  225 (559)
T KOG1334|consen  146 NTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENT  225 (559)
T ss_pred             ceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecc
Confidence            344555566663  444555555555555555555567778888888988644 45899999999999887654333335


Q ss_pred             eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc----------cCCCcEEEEeCCCCCCCC----------C
Q psy4578         661 HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE----------NYDQKLMIWDTRSHNVSK----------P  720 (860)
Q Consensus       661 ~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~----------~~dg~I~iwDl~~~~~~~----------~  720 (860)
                      ..+..|.++|..++.-|+..+.|.+++.|+.+.-+++....          ...-.|.++++.......          .
T Consensus       226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf  305 (559)
T KOG1334|consen  226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF  305 (559)
T ss_pred             eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence            56678999999999999999999999999997666655441          112236666653321000          0


Q ss_pred             e-----eeec------------------CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-----------eeE
Q psy4578         721 S-----HTVD------------------AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-----------KLH  766 (860)
Q Consensus       721 ~-----~~~~------------------~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-----------~~~  766 (860)
                      .     ..+.                  .....|+|++|+.++.-++ ++-.|-.|+++.-..+..           .+.
T Consensus       306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL-aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k  384 (559)
T KOG1334|consen  306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL-ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK  384 (559)
T ss_pred             hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee-eeecccceEEeccccccCCCCCCCcchhhccc
Confidence            0     0111                  0122578888887776544 445567788874332111           122


Q ss_pred             E-eccCCC--ceEEEEE-cCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578         767 S-FESHKD--EIFQVQW-SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  842 (860)
Q Consensus       767 ~-~~~h~~--~V~~l~f-sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~  842 (860)
                      . +++|.+  .|..+-| -|...+ +++|++-|.|.||+-.+.+.+              ....+...-|.|+.=+|--+
T Consensus       385 ~vYKGHrN~~TVKgVNFfGPrsEy-VvSGSDCGhIFiW~K~t~eii--------------~~MegDr~VVNCLEpHP~~P  449 (559)
T KOG1334|consen  385 RVYKGHRNSRTVKGVNFFGPRSEY-VVSGSDCGHIFIWDKKTGEII--------------RFMEGDRHVVNCLEPHPHLP  449 (559)
T ss_pred             hhhcccccccccceeeeccCccce-EEecCccceEEEEecchhHHH--------------HHhhcccceEeccCCCCCCc
Confidence            2 677764  4666655 455664 889999999999998874433              33333344788888899888


Q ss_pred             eEEEEEeCCCeEee
Q psy4578         843 WVICSVSEDNIMQK  856 (860)
Q Consensus       843 ~Llasgs~Dg~IrI  856 (860)
                       +||++|-|.-|+|
T Consensus       450 -vLAsSGid~DVKI  462 (559)
T KOG1334|consen  450 -VLASSGIDHDVKI  462 (559)
T ss_pred             -hhhccCCccceee
Confidence             7889999998887

>KOG1334|consensus

Probab=98.94  E-value=5.5e-09  Score=113.23  Aligned_cols=219  Identities=18%  Similarity=0.284  Sum_probs=159.6

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC-CCeEEEEEeCCCceee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY-SEYILATGSADKTQFE  694 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-g~~llasgs~Dg~i~~  694 (860)
                      .+-.|.+.|+.|.|+. .+..+++|+.|..|.+||...+.  ..+.-..+|...|..-.|-|. +..-+++++.||.   
T Consensus       137 kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~--~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq---  210 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGS--PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ---  210 (559)
T ss_pred             cccCCCCccceeeecc-cCceeeccCccceEEeehhhccC--cccccccccccchhhhhccCCCCCcCceeccccCc---
Confidence            3457889999999996 89999999999999999998753  233444678888888788774 3334888888988   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee--eEEeccCC
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK--LHSFESHK  772 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~--~~~~~~h~  772 (860)
                                  +++-.+...........+..|.+.|.-++.-|+..+-|.+++.|+.+.-+|++.....  +..-..+.
T Consensus       211 ------------vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~  278 (559)
T KOG1334|consen  211 ------------VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE  278 (559)
T ss_pred             ------------eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCC
Confidence                        7776665443334455667799999999999999999999999999999999876541  22222333


Q ss_pred             C---ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC-CCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578         773 D---EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED-GPPELLFIHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       773 ~---~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~-~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                      .   ...+++.+|...+.+++||.|..+++||.+............. .+..++   ....-.|++++++.++.-++++-
T Consensus       279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~---~d~~v~ITgl~Ysh~~sElLaSY  355 (559)
T KOG1334|consen  279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV---EDDPVNITGLVYSHDGSELLASY  355 (559)
T ss_pred             ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccc---ccCcccceeEEecCCccceeeee
Confidence            3   6788999999888899999999999999987543321110000 001111   12335699999998887788887


Q ss_pred             eCCCeEe
Q psy4578         849 SEDNIMQ  855 (860)
Q Consensus       849 s~Dg~Ir  855 (860)
                      ++..+.-
T Consensus       356 nDe~IYL  362 (559)
T KOG1334|consen  356 NDEDIYL  362 (559)
T ss_pred             cccceEE
Confidence            7766543

>KOG4497|consensus

Probab=98.94  E-value=2.4e-09  Score=110.66  Aligned_cols=183  Identities=17%  Similarity=0.237  Sum_probs=130.3

Q ss_pred             eeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCC
Q psy4578         626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQ  705 (860)
Q Consensus       626 ~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg  705 (860)
                      -++|+| +++++|+++.- .+.|-|..+-+   ..+.+. .-..|.-+.|.-+.-+++.+...++.              
T Consensus        13 ~c~fSp-~g~yiAs~~~y-rlviRd~~tlq---~~qlf~-cldki~yieW~ads~~ilC~~yk~~~--------------   72 (447)
T KOG4497|consen   13 FCSFSP-CGNYIASLSRY-RLVIRDSETLQ---LHQLFL-CLDKIVYIEWKADSCHILCVAYKDPK--------------   72 (447)
T ss_pred             ceeECC-CCCeeeeeeee-EEEEeccchhh---HHHHHH-HHHHhhheeeeccceeeeeeeeccce--------------
Confidence            467998 89999998765 78888887732   222221 13567889999999998888888887              


Q ss_pred             cEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCC
Q psy4578         706 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE  785 (860)
Q Consensus       706 ~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~  785 (860)
                       |.+|++...   .....+....+++.+++|||+|++++.+...|-.|.+|.+.+.....  +...+..+..++|+|+|+
T Consensus        73 -vqvwsl~Qp---ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~~~kg~~f~~dg~  146 (447)
T KOG4497|consen   73 -VQVWSLVQP---EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKTNVKGYAFHPDGQ  146 (447)
T ss_pred             -EEEEEeecc---eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--ecccccCceeEEECCCCc
Confidence             999999876   55667777888999999999999999999999999999999877533  332344568899999999


Q ss_pred             CEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEE
Q psy4578         786 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC  846 (860)
Q Consensus       786 ~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Lla  846 (860)
                      + .+.++.-.+....++..-+           ...++..+.-.+-..+++.|+|||.++++
T Consensus       147 f-~ai~sRrDCkdyv~i~~c~-----------~W~ll~~f~~dT~DltgieWsPdg~~laV  195 (447)
T KOG4497|consen  147 F-CAILSRRDCKDYVQISSCK-----------AWILLKEFKLDTIDLTGIEWSPDGNWLAV  195 (447)
T ss_pred             e-eeeeecccHHHHHHHHhhH-----------HHHHHHhcCCCcccccCceECCCCcEEEE
Confidence            6 5555532222222221100           01233333344556788999999997543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=5.4e-08  Score=112.08  Aligned_cols=198  Identities=11%  Similarity=0.086  Sum_probs=119.8

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCC--cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQ--KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG--~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      .++.++...+....+....+...+..|+|++..++++.+.+|  .|.+||+.++.    ...+..+.......+|+|+|+
T Consensus       229 ~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~----~~~lt~~~~~~~~~~~spDG~  304 (433)
T PRK04922        229 AIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ----LTRLTNHFGIDTEPTWAPDGK  304 (433)
T ss_pred             EEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC----eEECccCCCCccceEECCCCC
Confidence            345555544443333334445568899995555556666666  58899988753    234445555567889999999


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC--cEEEEeC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK--TVALWDL  758 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg--~I~IWDl  758 (860)
                      +++.+...+|.             ..|.++|+.+++.    ..+..+.......+|+|+|++++++...++  .|.+||+
T Consensus       305 ~l~f~sd~~g~-------------~~iy~~dl~~g~~----~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~  367 (433)
T PRK04922        305 SIYFTSDRGGR-------------PQIYRVAASGGSA----ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDL  367 (433)
T ss_pred             EEEEEECCCCC-------------ceEEEEECCCCCe----EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence            86655544443             2366667665421    222223344557899999997555444333  5999999


Q ss_pred             CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC--CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEE
Q psy4578         759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD--RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  836 (860)
Q Consensus       759 ~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D--g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~  836 (860)
                      .++..  ..+. +........|+|+|+.++++....  +.|.++++...               ....+..+.+.+...+
T Consensus       368 ~~g~~--~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~---------------~~~~l~~~~g~~~~p~  429 (433)
T PRK04922        368 STGSV--RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR---------------VRQRLVSADGEVREPA  429 (433)
T ss_pred             CCCCe--EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC---------------ceEEcccCCCCCCCCc
Confidence            88764  2333 233455679999999766555543  35667776431               1222223445666777


Q ss_pred             Ecc
Q psy4578         837 WNP  839 (860)
Q Consensus       837 ~sp  839 (860)
                      |+|
T Consensus       430 wsp  432 (433)
T PRK04922        430 WSP  432 (433)
T ss_pred             cCC
Confidence            876

>KOG1064|consensus

Probab=98.91  E-value=3.3e-09  Score=129.20  Aligned_cols=192  Identities=20%  Similarity=0.383  Sum_probs=144.7

Q ss_pred             eeeeeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc
Q psy4578         585 FLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD  664 (860)
Q Consensus       585 ~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~  664 (860)
                      .......+|+.|+.++..-++.|........--......|+.+.|+. .|+.+..+..||.+.+|...    .++....+
T Consensus      2215 ~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~----pk~~~s~q 2289 (2439)
T KOG1064|consen 2215 TSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS----PKPYTSWQ 2289 (2439)
T ss_pred             cCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC----Ccceeccc
Confidence            33445567888888877777777665444333333448899999997 67778888999999999987    46777888


Q ss_pred             CCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEE
Q psy4578         665 AHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  744 (860)
Q Consensus       665 ~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~ll  744 (860)
                      .|....+++.|-.   .++++++...            .++.+.+||..-......+.  ..|.+.++++++.|..+ ++
T Consensus      2290 chnk~~~Df~Fi~---s~~~tag~s~------------d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q-ll 2351 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIG---SLLATAGRSS------------DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ-LL 2351 (2439)
T ss_pred             cCCccccceeeee---hhhhccccCC------------CCCcccchhcccCcccceee--eecCCCceEEEEcCcce-EE
Confidence            8999999999875   3466665433            24569999986554333343  78999999999999888 69


Q ss_pred             EEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578         745 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       745 asgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                      ++|+.+|.|++||++..+. ++.++.         ++ ... .+++|+..|.|+||++.........
T Consensus      2352 isggr~G~v~l~D~rqrql-~h~~~~---------~~-~~~-~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQL-RHTFQA---------LD-TRE-YFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             EecCCcCcEEEeehHHHHH-HHHhhh---------hh-hhh-eeeccCcccceEEEEccccchhhcC
Confidence            9999999999999998776 555553         44 333 4889999999999999986655444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.91  E-value=1.9e-07  Score=104.10  Aligned_cols=210  Identities=12%  Similarity=0.210  Sum_probs=134.2

Q ss_pred             ccceeeeEeeccCCcEEEE-EeCCCcEEEEEcCCC-CcccCeeec----------cCCCCCeeEEEEccCCCeEEEEEeC
Q psy4578         621 LRLLIDVAWHLLHESLFGS-VADDQKLMIWDTRSH-NVSKPSHTV----------DAHTAEVNCLSFNPYSEYILATGSA  688 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~las-gs~DG~I~IWd~~~~-~~~~~~~~~----------~~h~~~V~~l~~sp~g~~llasgs~  688 (860)
                      ......++.+| +++++++ ...+|.|.++++... .........          ........++.|+|+|++++++.-.
T Consensus        86 g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG  164 (345)
T PF10282_consen   86 GSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG  164 (345)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred             CCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence            34567788998 4555544 456899999999863 222221111          1223567899999999986665543


Q ss_pred             CCceeeecccccccCCCcEEEEeCCCCCC-CCCeeee-cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC--CCcee
Q psy4578         689 DKTQFEVEEEEEENYDQKLMIWDTRSHNV-SKPSHTV-DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NLKLK  764 (860)
Q Consensus       689 Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~-~~~~~~~-~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~--~~~~~  764 (860)
                      ...               |.+|++..... ......+ ......-+.++|+|+++++++++..++.|.+|++.  .+...
T Consensus       165 ~D~---------------v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~  229 (345)
T PF10282_consen  165 ADR---------------VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT  229 (345)
T ss_dssp             TTE---------------EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             CCE---------------EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee
Confidence            333               88888876531 1111222 23456678999999999888888889999999998  33221


Q ss_pred             -eEEecc------CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578         765 -LHSFES------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  837 (860)
Q Consensus       765 -~~~~~~------h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~  837 (860)
                       +.....      .......++++|+|++++++...++.|.+|++.....          ....+...........++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g----------~l~~~~~~~~~G~~Pr~~~~  299 (345)
T PF10282_consen  230 EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG----------TLTLVQTVPTGGKFPRHFAF  299 (345)
T ss_dssp             EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT----------TEEEEEEEEESSSSEEEEEE
T ss_pred             EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC----------ceEEEEEEeCCCCCccEEEE
Confidence             111111      1126788999999998777777889999999954211          11222222222345789999


Q ss_pred             ccCCCeEEEEEeCCCeEee
Q psy4578         838 NPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       838 spdg~~Llasgs~Dg~IrI  856 (860)
                      +|+|++|++++..++.|.+
T Consensus       300 s~~g~~l~Va~~~s~~v~v  318 (345)
T PF10282_consen  300 SPDGRYLYVANQDSNTVSV  318 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEE
T ss_pred             eCCCCEEEEEecCCCeEEE
Confidence            9999999988888887764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=1.1e-07  Score=108.95  Aligned_cols=185  Identities=11%  Similarity=0.156  Sum_probs=109.9

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCC----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQ----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  679 (860)
                      +|+.+...+...++....+.....+|+|++..++++...+|    .+.+|++..+...........+.+.....+|+|||
T Consensus       213 I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG  292 (428)
T PRK01029        213 IFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG  292 (428)
T ss_pred             EEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC
Confidence            44455555554444444555667899994444444443333    34446766532122222222223445678999999


Q ss_pred             CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC--CcEEEEe
Q psy4578         680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD--KTVALWD  757 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D--g~I~IWD  757 (860)
                      +.++.+...+|.             ..|.++++....  .....+..+...+....|+|+|+.+++++..+  ..|.+||
T Consensus       293 ~~Laf~s~~~g~-------------~~ly~~~~~~~g--~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~d  357 (428)
T PRK01029        293 TRLVFVSNKDGR-------------PRIYIMQIDPEG--QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYD  357 (428)
T ss_pred             CEEEEEECCCCC-------------ceEEEEECcccc--cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEE
Confidence            986666655554             124444543211  12233444455677899999999755555443  3699999


Q ss_pred             CCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC--CcEEEEECCCC
Q psy4578         758 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD--RRLHVWDLSKI  805 (860)
Q Consensus       758 l~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D--g~I~iWdl~~~  805 (860)
                      +.++..  ..+......+....|+|+|+.+++++..+  +.|.+||+..+
T Consensus       358 l~~g~~--~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        358 LATGRD--YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             CCCCCe--EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            988874  33433344567899999999866665543  56778887763

>KOG4227|consensus

Probab=98.86  E-value=4.6e-08  Score=103.04  Aligned_cols=164  Identities=18%  Similarity=0.303  Sum_probs=124.0

Q ss_pred             eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCC---CCCCCeeeec-CCCCCeEEEEE
Q psy4578         661 HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSH---NVSKPSHTVD-AHTAEVNCLSF  736 (860)
Q Consensus       661 ~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~---~~~~~~~~~~-~h~~~I~sl~~  736 (860)
                      +.+.+|.+.|..+.|+.++++ |++|+.|..               +++|++...   +..+++.... .|...|.|++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~-L~SGGDD~~---------------~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F  113 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRF-LASGGDDMH---------------GRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF  113 (609)
T ss_pred             hhhhhhccccceeeeccCCeE-EeecCCcce---------------eeeechHHHHhhcCCCCceeccCccccceEEEEE
Confidence            445789999999999999885 999999998               889987542   2224444333 35689999999


Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec--cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc
Q psy4578         737 NPYSEYILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA  814 (860)
Q Consensus       737 sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~--~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~  814 (860)
                      ...+.+ +.+|+.+|+|...|+.+.+. +..+.  ...+.|+.+..+|... +|++.+.+|.|.+||.+.....      
T Consensus       114 ~~~N~~-~~SG~~~~~VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~------  184 (609)
T KOG4227|consen  114 DLENRF-LYSGERWGTVIKHDIETKQS-IYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNP------  184 (609)
T ss_pred             ccCCee-EecCCCcceeEeeeccccee-eeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCC------
Confidence            987775 88999999999999999876 55444  2345999999999965 6899999999999999874321      


Q ss_pred             cCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       815 ~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                           .-.............+-|+|..+.|+++.+..+-+
T Consensus       185 -----~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~  219 (609)
T KOG4227|consen  185 -----ISLVLPANSGKNFYTAEFHPETPALILVNSETGGP  219 (609)
T ss_pred             -----CceeeecCCCccceeeeecCCCceeEEeccccCCC
Confidence                 11222233455677889999998888887765543

>KOG0309|consensus

Probab=98.84  E-value=8e-09  Score=116.34  Aligned_cols=216  Identities=18%  Similarity=0.322  Sum_probs=155.9

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      +.+|...|+++.|+|+...++++++.|..+..||+++.  ..++.....-....+.+.|+-....++++. ....     
T Consensus       110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp--~~p~ys~~~w~s~asqVkwnyk~p~vlass-hg~~-----  181 (1081)
T KOG0309|consen  110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP--HRPFYSTSSWRSAASQVKWNYKDPNVLASS-HGND-----  181 (1081)
T ss_pred             EecCccceeccccCCCCCcceeeccccccceeeeccCC--CcceeeeecccccCceeeecccCcchhhhc-cCCc-----
Confidence            34667889999999999999999999999999999985  344444444456678899998777655554 3333     


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceE
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIF  776 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~  776 (860)
                                |.+||.+.+.  .++..+++|...|++++|+..-...+.+++.||+|+.||.......-........+|+
T Consensus       182 ----------i~vwd~r~gs--~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw  249 (1081)
T KOG0309|consen  182 ----------IFVWDLRKGS--TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIW  249 (1081)
T ss_pred             ----------eEEEeccCCC--cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcce
Confidence                      9999999874  6788899999999999998754445889999999999998765442233334556788


Q ss_pred             EEEEcCCCCCEEEEEE-CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCC---------CeEEE
Q psy4578         777 QVQWSPHNETILASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE---------PWVIC  846 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs-~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg---------~~Lla  846 (860)
                      .-++-|-|.-..+--. .+..+.+++.++....+....    ...+++.+.||...|..+.|-..+         .+-++
T Consensus       250 ~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~----~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLV  325 (1081)
T KOG0309|consen  250 RGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFD----LNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLV  325 (1081)
T ss_pred             eccccccCceeEeccccCCeeeeeccccchhhhhcccc----CCcceeeecCcchHHHHHhhhhcccccCCCCccceeEE
Confidence            8888887654222211 233566666655444333222    246789999999999888775422         35688


Q ss_pred             EEeCCCeEee
Q psy4578         847 SVSEDNIMQK  856 (860)
Q Consensus       847 sgs~Dg~IrI  856 (860)
                      |-|.|..+|+
T Consensus       326 TWSkD~~lrl  335 (1081)
T KOG0309|consen  326 TWSKDQTLRL  335 (1081)
T ss_pred             EeecCCceEe
Confidence            9999999885

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.84  E-value=2.5e-07  Score=105.97  Aligned_cols=171  Identities=13%  Similarity=0.147  Sum_probs=110.1

Q ss_pred             cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee
Q psy4578         645 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV  724 (860)
Q Consensus       645 ~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~  724 (860)
                      .|.++|....    ....+..+...+.+..|+|+|++++.+...++             ...|++||+.++..    ..+
T Consensus       171 ~l~~~d~~g~----~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~-------------~~~i~v~d~~~g~~----~~~  229 (417)
T TIGR02800       171 ELQVADYDGA----NPQTITRSREPILSPAWSPDGQKLAYVSFESG-------------KPEIYVQDLATGQR----EKV  229 (417)
T ss_pred             eEEEEcCCCC----CCEEeecCCCceecccCCCCCCEEEEEEcCCC-------------CcEEEEEECCCCCE----EEe
Confidence            5777777532    12344456667899999999998555443332             23499999987522    223


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEeeCCC--cEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCC--cEEEE
Q psy4578         725 DAHTAEVNCLSFNPYSEYILATGSADK--TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR--RLHVW  800 (860)
Q Consensus       725 ~~h~~~I~sl~~sp~g~~llasgs~Dg--~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg--~I~iW  800 (860)
                      ..+.+.+.+++|+|+|+.++++.+.++  .|++||+.++..  ..+..+........|+|+|+++++++..++  .|++|
T Consensus       230 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~  307 (417)
T TIGR02800       230 ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL--TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMM  307 (417)
T ss_pred             ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE--EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEE
Confidence            345556778999999997666666555  588889887653  344445555567899999997555554444  46677


Q ss_pred             ECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         801 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       801 dl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                      |+.+...               ..+..+...+...+|+|+|++++++...++.
T Consensus       308 d~~~~~~---------------~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~  345 (417)
T TIGR02800       308 DADGGEV---------------RRLTFRGGYNASPSWSPDGDLIAFVHREGGG  345 (417)
T ss_pred             ECCCCCE---------------EEeecCCCCccCeEECCCCCEEEEEEccCCc
Confidence            7654221               1112233456778999999987766655533

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321|consensus

Probab=98.81  E-value=1.7e-07  Score=103.58  Aligned_cols=190  Identities=17%  Similarity=0.277  Sum_probs=128.8

Q ss_pred             hhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC-CC-e------------------
Q psy4578         611 RAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT-AE-V------------------  670 (860)
Q Consensus       611 ~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~-~~-V------------------  670 (860)
                      +-++.+-+.+...-+.|..+|++.-++++|..--.|++||+..-..     .+..|. .. |                  
T Consensus        41 rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-----KFERhlDae~V~feiLsDD~SK~v~L~~D  115 (703)
T KOG2321|consen   41 RIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-----KFERHLDAEVVDFEILSDDYSKSVFLQND  115 (703)
T ss_pred             HHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-----eeeecccccceeEEEeccchhhheEeecC
Confidence            4456677778888999999997667789999999999999975211     111111 11 1                  


Q ss_pred             ---------------------eEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCC
Q psy4578         671 ---------------------NCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA  729 (860)
Q Consensus       671 ---------------------~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~  729 (860)
                                           .+++++...-.++++|+                ...|.-+++..+   ..+..+....+
T Consensus       116 R~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gs----------------g~evYRlNLEqG---rfL~P~~~~~~  176 (703)
T KOG2321|consen  116 RTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGS----------------GSEVYRLNLEQG---RFLNPFETDSG  176 (703)
T ss_pred             ceeeehhhcCeeeeeecCcCCccccccCCCccEEEeec----------------CcceEEEEcccc---ccccccccccc
Confidence                                 12222211111222222                223777788887   45555666678


Q ss_pred             CeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec------cCCC-----ceEEEEEcCCCCCEEEEEECCCcEE
Q psy4578         730 EVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE------SHKD-----EIFQVQWSPHNETILASSGTDRRLH  798 (860)
Q Consensus       730 ~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~------~h~~-----~V~~l~fsp~g~~lL~tgs~Dg~I~  798 (860)
                      .++++..++... +|++|+.+|.|..||.+.... +..+.      .|.+     .|+++.|+.+|-. ++.|+.+|.+.
T Consensus       177 ~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-~aVGts~G~v~  253 (703)
T KOG2321|consen  177 ELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-VAVGTSTGSVL  253 (703)
T ss_pred             cceeeeecCccc-eEEecccCceEEEecchhhhh-heeeecccccCCCccccccCcceEEEecCCcee-EEeeccCCcEE
Confidence            999999999877 799999999999999998765 33322      2333     4999999999875 89999999999


Q ss_pred             EEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccC
Q psy4578         799 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN  840 (860)
Q Consensus       799 iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd  840 (860)
                      |||+++....             +..-.+..-+|..+.|.+.
T Consensus       254 iyDLRa~~pl-------------~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  254 IYDLRASKPL-------------LVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             EEEcccCCce-------------eecccCCccceeeeccccc
Confidence            9999984432             2222234557778888665

>KOG0974|consensus

Probab=98.80  E-value=1.2e-07  Score=111.54  Aligned_cols=181  Identities=16%  Similarity=0.289  Sum_probs=132.4

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCe-----eEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578         633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEV-----NCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL  707 (860)
Q Consensus       633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V-----~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I  707 (860)
                      ....++.++.+..+.+||...+..   .... .+...+     .-+.++++.- -+++|+.-+.               |
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~---~~~i-~~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~---------------i  157 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSV---LSKI-QSDERCTLYSSLIIGDSAEEL-YIASGSVFGE---------------I  157 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCce---ehhc-CCCceEEEEeEEEEeccCcEE-EEEecccccc---------------E
Confidence            456677788888999999876422   2221 222221     1122233333 3677776666               8


Q ss_pred             EEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCE
Q psy4578         708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI  787 (860)
Q Consensus       708 ~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~l  787 (860)
                      .+|+....+  .+. .+.+|.+.|.++.|+-+|.+ +++.|.|.++++|++.+.+......-+|...|+.++|.|.  . 
T Consensus       158 ivW~~~~dn--~p~-~l~GHeG~iF~i~~s~dg~~-i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~-  230 (967)
T KOG0974|consen  158 IVWKPHEDN--KPI-RLKGHEGSIFSIVTSLDGRY-IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--R-  230 (967)
T ss_pred             EEEeccccC--Ccc-eecccCCceEEEEEccCCcE-EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--e-
Confidence            999987332  222 67899999999999999996 9999999999999999988744455679999999999998  3 


Q ss_pred             EEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCcc-CceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         788 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT-AKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       788 L~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~-~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++|++.|.+.++|+..-.               .+..+.+|. ..|..++.+++.. +++|+++|+.+++
T Consensus       231 i~t~gedctcrvW~~~~~---------------~l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~  284 (967)
T KOG0974|consen  231 IITVGEDCTCRVWGVNGT---------------QLEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKL  284 (967)
T ss_pred             eEEeccceEEEEEecccc---------------eehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhh
Confidence            899999999999965531               122444554 4688999988877 6889999999885

>KOG1409|consensus

Probab=98.78  E-value=6e-07  Score=93.98  Aligned_cols=181  Identities=19%  Similarity=0.287  Sum_probs=136.0

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCC-cccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN-VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~-~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      .+.+++++.+.+ ....|++|-..|++.-+.+...- .....+....|...+..+-|+-.-.. +++.+.|..+.+.-.+
T Consensus        67 mP~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~-V~s~~~dk~~~~hc~e  144 (404)
T KOG1409|consen   67 MPSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEW-VLSTGKDKQFAWHCTE  144 (404)
T ss_pred             CCCCceEeeeec-cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCcee-EEEeccccceEEEeec
Confidence            357789999997 67788999999999999876421 12344556779999999999876665 6666666653322211


Q ss_pred             cc------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEE
Q psy4578         699 EE------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA  754 (860)
Q Consensus       699 ~~------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~  754 (860)
                      .+                        +...|+|..-.+... ....+.++.+|.+.+++++|.|... ++.+|..|..+.
T Consensus       145 ~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~-~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi  222 (404)
T KOG1409|consen  145 SGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQN-GCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVI  222 (404)
T ss_pred             cCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeec-CCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceE
Confidence            11                        122344444443332 2367788999999999999999776 799999999999


Q ss_pred             EEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578         755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       755 IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~  805 (860)
                      +||+-..........+|...|..+...+.-+. +.+++.||.|.+|+++..
T Consensus       223 ~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~-l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  223 MWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ-LISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             EEeccCCcceeeeeccchhhhhhhhhhhhhee-eeeccCCCeEEEEeccce
Confidence            99998877667788899999999988877765 889999999999998763

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.78  E-value=2.1e-06  Score=91.15  Aligned_cols=207  Identities=15%  Similarity=0.233  Sum_probs=137.7

Q ss_pred             ceeeeEeeccCCcEEEEEe-CCCcEEEEEcCCCCcccCeeeccCCCCC----------eeEEEEccCCCeEEEEEe-CCC
Q psy4578         623 LLIDVAWHLLHESLFGSVA-DDQKLMIWDTRSHNVSKPSHTVDAHTAE----------VNCLSFNPYSEYILATGS-ADK  690 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs-~DG~I~IWd~~~~~~~~~~~~~~~h~~~----------V~~l~~sp~g~~llasgs-~Dg  690 (860)
                      +-+-++.++ ++++++++. ..|.|.++-++.............|.+.          +.+..+.|++++++++.- .|.
T Consensus        90 ~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr  168 (346)
T COG2706          90 PPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR  168 (346)
T ss_pred             CCeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce
Confidence            348899998 566666554 5689999999763222333233344444          889999999997554442 233


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES  770 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~  770 (860)
                                      |.+|++..+.........-.....-+.|.|||++++..+.+--+++|.+|........+..++.
T Consensus       169 ----------------i~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~  232 (346)
T COG2706         169 ----------------IFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT  232 (346)
T ss_pred             ----------------EEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence                            8899998664322222222345667899999999987778888999999999875322333332


Q ss_pred             ---------CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCC
Q psy4578         771 ---------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE  841 (860)
Q Consensus       771 ---------h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg  841 (860)
                               ...+..+|..+++|+++.++--....|.+|.+......          ...+.....+...-.++.+++.|
T Consensus       233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~----------L~~~~~~~teg~~PR~F~i~~~g  302 (346)
T COG2706         233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK----------LELVGITPTEGQFPRDFNINPSG  302 (346)
T ss_pred             eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE----------EEEEEEeccCCcCCccceeCCCC
Confidence                     23567889999999974444434568888887763321          12333334455557889999999


Q ss_pred             CeEEEEEeCCCeEee
Q psy4578         842 PWVICSVSEDNIMQK  856 (860)
Q Consensus       842 ~~Llasgs~Dg~IrI  856 (860)
                      ++|+|++-++..+.+
T Consensus       303 ~~Liaa~q~sd~i~v  317 (346)
T COG2706         303 RFLIAANQKSDNITV  317 (346)
T ss_pred             CEEEEEccCCCcEEE
Confidence            998888877777654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.77  E-value=9.6e-07  Score=98.91  Aligned_cols=178  Identities=10%  Similarity=0.090  Sum_probs=114.2

Q ss_pred             ccchhhhhhhhhcccc-eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEE
Q psy4578         608 NKTRAQICQLLDKLRL-LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG  686 (860)
Q Consensus       608 n~~~~~l~~l~~~~~~-V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasg  686 (860)
                      +..+.++...+...+. -..+.++| +++++++++.||.|.++|+.+.+   .+..+.. .....++++++||+++++++
T Consensus        22 D~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~---~v~~i~~-G~~~~~i~~s~DG~~~~v~n   96 (369)
T PF02239_consen   22 DGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGK---VVATIKV-GGNPRGIAVSPDGKYVYVAN   96 (369)
T ss_dssp             ETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSS---EEEEEE--SSEEEEEEE--TTTEEEEEE
T ss_pred             ECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCccc---EEEEEec-CCCcceEEEcCCCCEEEEEe
Confidence            3334444444443333 34567887 77888888899999999999853   4555544 34568899999999977777


Q ss_pred             eCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC-------CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578         687 SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA-------HTAEVNCLSFNPYSEYILATGSADKTVALWDLR  759 (860)
Q Consensus       687 s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~-------h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~  759 (860)
                      ...+.               +.++|.++.   +.+..+..       ....+.++..+|.+...+++--..+.|.+-|..
T Consensus        97 ~~~~~---------------v~v~D~~tl---e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~  158 (369)
T PF02239_consen   97 YEPGT---------------VSVIDAETL---EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS  158 (369)
T ss_dssp             EETTE---------------EEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred             cCCCc---------------eeEeccccc---cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence            77887               999999886   44444332       235678888888888534444445888888887


Q ss_pred             CCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       760 ~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      ....................|+|++++++++...++.|-++|..+....
T Consensus       159 d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v  207 (369)
T PF02239_consen  159 DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV  207 (369)
T ss_dssp             TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             cccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence            7654333333345677889999999987776667788999998876543

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.75  E-value=8.1e-07  Score=102.30  Aligned_cols=170  Identities=11%  Similarity=0.101  Sum_probs=108.6

Q ss_pred             cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee
Q psy4578         645 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV  724 (860)
Q Consensus       645 ~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~  724 (860)
                      .|.++|...+.    ...+..+...+....|+|+|+.++.+...++             ...|.+||+.++.. .   .+
T Consensus       180 ~l~~~d~~g~~----~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~-------------~~~l~~~~l~~g~~-~---~l  238 (430)
T PRK00178        180 TLQRSDYDGAR----AVTLLQSREPILSPRWSPDGKRIAYVSFEQK-------------RPRIFVQNLDTGRR-E---QI  238 (430)
T ss_pred             EEEEECCCCCC----ceEEecCCCceeeeeECCCCCEEEEEEcCCC-------------CCEEEEEECCCCCE-E---Ec
Confidence            36777776432    2334456778899999999998655543332             23488999987632 1   22


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEeeCCC--cEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCC--cEEEE
Q psy4578         725 DAHTAEVNCLSFNPYSEYILATGSADK--TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR--RLHVW  800 (860)
Q Consensus       725 ~~h~~~I~sl~~sp~g~~llasgs~Dg--~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg--~I~iW  800 (860)
                      ....+.+....|+|+|+.++++.+.+|  .|++||+.++..  ..+..+........|+|+|+.++++...+|  .|+++
T Consensus       239 ~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~  316 (430)
T PRK00178        239 TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV  316 (430)
T ss_pred             cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEE
Confidence            223344557899999998666666666  588889988764  345555556677899999998666655554  46666


Q ss_pred             ECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         801 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       801 dl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      |+.++....            +. ..+  .......|+|+|++++.+...++
T Consensus       317 d~~~g~~~~------------lt-~~~--~~~~~~~~Spdg~~i~~~~~~~~  353 (430)
T PRK00178        317 NVNGGRAER------------VT-FVG--NYNARPRLSADGKTLVMVHRQDG  353 (430)
T ss_pred             ECCCCCEEE------------ee-cCC--CCccceEECCCCCEEEEEEccCC
Confidence            765533211            11 111  12345689999998777766555

>KOG0974|consensus

Probab=98.74  E-value=1.2e-07  Score=111.69  Aligned_cols=176  Identities=20%  Similarity=0.350  Sum_probs=132.9

Q ss_pred             EEEeeccchhhhhhhhhcccc--eeee---EeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578         603 VMYLENKTRAQICQLLDKLRL--LIDV---AWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  677 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~--V~~v---~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp  677 (860)
                      .+.+++.....+..-..+...  ..++   -+++ +.-++++|+.-|.|.+|+....  ..+. .+.+|.+.+.++.|+.
T Consensus       110 s~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~d--n~p~-~l~GHeG~iF~i~~s~  185 (967)
T KOG0974|consen  110 SLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHED--NKPI-RLKGHEGSIFSIVTSL  185 (967)
T ss_pred             eEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEecccc--CCcc-eecccCCceEEEEEcc
Confidence            344444445554444444332  1122   2233 4567899999999999999732  2233 5789999999999999


Q ss_pred             CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578         678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD  757 (860)
Q Consensus       678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD  757 (860)
                      +|++ +++.++|.+               +++|++.+.+...  .+.-+|++.|..++++|+  . ++|++.|.+.++|+
T Consensus       186 dg~~-i~s~SdDRs---------------iRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~-i~t~gedctcrvW~  244 (967)
T KOG0974|consen  186 DGRY-IASVSDDRS---------------IRLWPIDSREVLG--CTGFGHSARVWACCFLPN--R-IITVGEDCTCRVWG  244 (967)
T ss_pred             CCcE-EEEEecCcc---------------eeeeecccccccC--cccccccceeEEEEeccc--e-eEEeccceEEEEEe
Confidence            9996 899999999               9999999875433  356689999999999998  3 89999999999998


Q ss_pred             CCCCceeeEEeccCC-CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         758 LRNLKLKLHSFESHK-DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       758 l~~~~~~~~~~~~h~-~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      .+....  ..+.+|. ..++.++..+... +.+|++.||.+++||+....
T Consensus       245 ~~~~~l--~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  245 VNGTQL--EVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             ccccee--hhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhccc
Confidence            776654  3666775 4688898887765 69999999999999987643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.72  E-value=6e-07  Score=103.65  Aligned_cols=198  Identities=11%  Similarity=0.090  Sum_probs=116.2

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCc--EEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQK--LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~--I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      .++.++...++...+....+......|+|++..++++.+.+|.  |.+||+.+++    ...+..+.......+|+|+|+
T Consensus       243 ~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~----~~~lt~~~~~~~~p~wSpDG~  318 (448)
T PRK04792        243 EIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA----LTRITRHRAIDTEPSWHPDGK  318 (448)
T ss_pred             EEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC----eEECccCCCCccceEECCCCC
Confidence            3455554444433333333445578999955555566777776  6666776643    234444555677889999999


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc--EEEEeC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT--VALWDL  758 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~--I~IWDl  758 (860)
                      +++.+...++.             ..|.++|+.+++.    ..+..+.......+|+|+|+++++++..++.  |.++|+
T Consensus       319 ~I~f~s~~~g~-------------~~Iy~~dl~~g~~----~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl  381 (448)
T PRK04792        319 SLIFTSERGGK-------------PQIYRVNLASGKV----SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDL  381 (448)
T ss_pred             EEEEEECCCCC-------------ceEEEEECCCCCE----EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence            87666654443             2467777766532    1221122234457999999986666655554  455677


Q ss_pred             CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCc--EEEEECCCCCcccccccccCCCCccEEEecCccCceEEEE
Q psy4578         759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR--LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  836 (860)
Q Consensus       759 ~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~--I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~  836 (860)
                      .++..  ..+... .......|+|+|+.++++...+|.  +++++... .              ....+..+.+.+...+
T Consensus       382 ~~g~~--~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~--------------~~~~l~~~~g~~~~p~  443 (448)
T PRK04792        382 ETGAM--QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-R--------------FKARLPAGQGEVKSPA  443 (448)
T ss_pred             CCCCe--EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-C--------------ceEECcCCCCCcCCCc
Confidence            77653  223222 122345899999987777766665  55666532 1              1222333445567778


Q ss_pred             Ecc
Q psy4578         837 WNP  839 (860)
Q Consensus       837 ~sp  839 (860)
                      |+|
T Consensus       444 Wsp  446 (448)
T PRK04792        444 WSP  446 (448)
T ss_pred             cCC
Confidence            887

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.70  E-value=1.6e-06  Score=96.79  Aligned_cols=214  Identities=10%  Similarity=0.118  Sum_probs=134.5

Q ss_pred             hcccceeeeEeeccCCcEEEEEeC----CCcEEEEEcCCC-CcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVAD----DQKLMIWDTRSH-NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~----DG~I~IWd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      ........++++| ++++|.++..    +|.|..|.+... .....+..........+.++++|++++++++...+|+  
T Consensus        34 ~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~--  110 (345)
T PF10282_consen   34 AEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGS--  110 (345)
T ss_dssp             EESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTE--
T ss_pred             cCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCe--
Confidence            3456678899998 5666666555    679999998764 2223344443345566789999999987777767887  


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCe-eee----------cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPS-HTV----------DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK  762 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~-~~~----------~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~  762 (860)
                                   +.++++......... ..+          ........++.++|+|++++++.-....|.+|++....
T Consensus       111 -------------v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~  177 (345)
T PF10282_consen  111 -------------VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT  177 (345)
T ss_dssp             -------------EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred             -------------EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence                         777776653111111 111          01234568899999999877666556789999998765


Q ss_pred             eee---EEe-ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc-ccccccccCCCCccEEEec-Cc--cCceEE
Q psy4578         763 LKL---HSF-ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE-EQSTEDAEDGPPELLFIHG-GH--TAKISD  834 (860)
Q Consensus       763 ~~~---~~~-~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~-~~~~~~~~~~~~~~i~~~~-~h--~~~I~~  834 (860)
                      ..+   ..+ .......+.++|+|+|+++.+++-.++.|.++++....- .....        .+.... +.  ......
T Consensus       178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~  249 (345)
T PF10282_consen  178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ--------TISTLPEGFTGENAPAE  249 (345)
T ss_dssp             -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE--------EEESCETTSCSSSSEEE
T ss_pred             ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE--------EeeeccccccccCCcee
Confidence            211   112 234567899999999998777777899999999883111 11100        011110 11  125788


Q ss_pred             EEEccCCCeEEEEEeCCCeEee
Q psy4578         835 FSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       835 i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |+++|||++|+++...++.|.+
T Consensus       250 i~ispdg~~lyvsnr~~~sI~v  271 (345)
T PF10282_consen  250 IAISPDGRFLYVSNRGSNSISV  271 (345)
T ss_dssp             EEE-TTSSEEEEEECTTTEEEE
T ss_pred             EEEecCCCEEEEEeccCCEEEE
Confidence            9999999999988877776653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.69  E-value=2.3e-06  Score=97.55  Aligned_cols=191  Identities=10%  Similarity=0.033  Sum_probs=116.8

Q ss_pred             cceeeeEeeccCCcEEEEEeC---CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVAD---DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~---DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      +......|+|++...++..+.   +..|.++|+.+++.    ..+....+......|+|||+.++++.+.++        
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~----~~lt~~~g~~~~~~~SPDG~~la~~~~~~g--------  255 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK----EKIASSQGMLVVSDVSKDGSKLLLTMAPKG--------  255 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE----EEEecCCCcEEeeEECCCCCEEEEEEccCC--------
Confidence            377789999955444554333   34688888877533    222234556677889999998777776554        


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC--cEEEEeCCCCceeeEEeccCCCceE
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK--TVALWDLRNLKLKLHSFESHKDEIF  776 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg--~I~IWDl~~~~~~~~~~~~h~~~V~  776 (860)
                           +..|.++|+.++.    ...+..+........|+|+|+.++++....|  .|.+.|+.++........+.  .  
T Consensus       256 -----~~~Iy~~dl~~g~----~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~--  322 (419)
T PRK04043        256 -----QPDIYLYDTNTKT----LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N--  322 (419)
T ss_pred             -----CcEEEEEECCCCc----EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c--
Confidence                 2458888887653    2233333333445689999998777765555  47777887766422122221  1  


Q ss_pred             EEEEcCCCCCEEEEEECC--------CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578         777 QVQWSPHNETILASSGTD--------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~D--------g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                      ...|+|+|+++++++..+        ..|.+.|+.++....            +   ... +......|+|||+.++.+.
T Consensus       323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~------------L---T~~-~~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR------------L---TAN-GVNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE------------C---CCC-CCcCCeEECCCCCEEEEEE
Confidence            248999999866666543        367777776643211            1   111 1222478999999877666


Q ss_pred             eCCCe
Q psy4578         849 SEDNI  853 (860)
Q Consensus       849 s~Dg~  853 (860)
                      ...+.
T Consensus       387 ~~~~~  391 (419)
T PRK04043        387 YLGNQ  391 (419)
T ss_pred             ccCCc
Confidence            54443

>KOG4547|consensus

Probab=98.67  E-value=9.2e-07  Score=98.77  Aligned_cols=149  Identities=15%  Similarity=0.257  Sum_probs=124.5

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578         633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDT  712 (860)
Q Consensus       633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl  712 (860)
                      +...++-|...|.|.+|++..++.... ..-..|.+.|.++.|+.+-.. +.+++.|+.               +..|+.
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~-~st~~h~~~v~~~~~~~~~~c-iyS~~ad~~---------------v~~~~~  131 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAK-LSTDKHYGNVNEILDAQRLGC-IYSVGADLK---------------VVYILE  131 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEE-EecCCCCCcceeeecccccCc-eEecCCcee---------------EEEEec
Confidence            556788899999999999988654222 223579999999999987774 889999988               999998


Q ss_pred             CCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCC-----CCCE
Q psy4578         713 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-----NETI  787 (860)
Q Consensus       713 ~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~-----g~~l  787 (860)
                      ...   ..+....+....+.+++.+|||. ++++|+  +.|++||+.+.+. +..|.+|.++|+++.|.-.     |.++
T Consensus       132 ~~~---~~~~~~~~~~~~~~sl~is~D~~-~l~~as--~~ik~~~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~v  204 (541)
T KOG4547|consen  132 KEK---VIIRIWKEQKPLVSSLCISPDGK-ILLTAS--RQIKVLDIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYV  204 (541)
T ss_pred             ccc---eeeeeeccCCCccceEEEcCCCC-EEEecc--ceEEEEEccCceE-EEEecCCCcceEEEEEEEecccccccee
Confidence            876   56667778888899999999998 577776  6899999999998 8999999999999999877     7887


Q ss_pred             EEEEECCCcEEEEECCCC
Q psy4578         788 LASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       788 L~tgs~Dg~I~iWdl~~~  805 (860)
                      |.+...+..+.+|-+...
T Consensus       205 Lssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  205 LSSAAAERGITVWVVEKE  222 (541)
T ss_pred             eeccccccceeEEEEEcc
Confidence            877788888999987763

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.67  E-value=2.3e-06  Score=95.88  Aligned_cols=184  Identities=16%  Similarity=0.218  Sum_probs=117.5

Q ss_pred             CcEE-EEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578         634 ESLF-GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDT  712 (860)
Q Consensus       634 ~~~l-asgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl  712 (860)
                      ++++ ++-..+|.|.+.|..+.   +.+..+......-..+.++|||+++++ ++.||.               |.++|+
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~---~~~~~i~~~~~~h~~~~~s~Dgr~~yv-~~rdg~---------------vsviD~   65 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATN---KVVARIPTGGAPHAGLKFSPDGRYLYV-ANRDGT---------------VSVIDL   65 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT----SEEEEEE-STTEEEEEE-TT-SSEEEE-EETTSE---------------EEEEET
T ss_pred             ccEEEEEecCCCEEEEEECCCC---eEEEEEcCCCCceeEEEecCCCCEEEE-EcCCCe---------------EEEEEC
Confidence            4555 45567899999999884   445555544333455789999998544 567888               999999


Q ss_pred             CCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc-------CCCceEEEEEcCCCC
Q psy4578         713 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES-------HKDEIFQVQWSPHNE  785 (860)
Q Consensus       713 ~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~-------h~~~V~~l~fsp~g~  785 (860)
                      .+.   +.+..+.. .....+++++++|+++++++..++.+.++|.++.+. +.....       ....+.++..+|.++
T Consensus        66 ~~~---~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~  140 (369)
T PF02239_consen   66 ATG---KVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRP  140 (369)
T ss_dssp             TSS---SEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred             Ccc---cEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCC
Confidence            987   45555553 345688999999998777777899999999999876 555432       234678888889888


Q ss_pred             CEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         786 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       786 ~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      .++++.-+.+.|.+.|......             +............+..|+|+++|++++...++.+
T Consensus       141 ~fVv~lkd~~~I~vVdy~d~~~-------------~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i  196 (369)
T PF02239_consen  141 EFVVNLKDTGEIWVVDYSDPKN-------------LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI  196 (369)
T ss_dssp             EEEEEETTTTEEEEEETTTSSC-------------EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred             EEEEEEccCCeEEEEEeccccc-------------cceeeecccccccccccCcccceeeeccccccee
Confidence            5444444558888888776321             1111222345567899999999988765554444

...

>KOG1354|consensus

Probab=98.67  E-value=1.5e-07  Score=98.31  Aligned_cols=217  Identities=20%  Similarity=0.288  Sum_probs=134.8

Q ss_pred             hcccceeeeEeeccC-CcEEEEEeCCCcEEEEEcCCCCccc--------------------------------Cee-ecc
Q psy4578         619 DKLRLLIDVAWHLLH-ESLFGSVADDQKLMIWDTRSHNVSK--------------------------------PSH-TVD  664 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~-~~~lasgs~DG~I~IWd~~~~~~~~--------------------------------~~~-~~~  664 (860)
                      .-..+|+.+.|.+++ ...++..+.|.+|++|.+.......                                +.+ .-.
T Consensus        82 eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aN  161 (433)
T KOG1354|consen   82 EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYAN  161 (433)
T ss_pred             hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccc
Confidence            344679999999753 3457777889999999886422111                                000 114


Q ss_pred             CCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCC-----CCCeEEEEEcCC
Q psy4578         665 AHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAH-----TAEVNCLSFNPY  739 (860)
Q Consensus       665 ~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h-----~~~I~sl~~sp~  739 (860)
                      +|...|.++.++.|+.. ++++ +|-.               |.+|++.-....-.+.-++.+     +.-|++..|||.
T Consensus       162 aHtyhiNSIS~NsD~Et-~lSA-DdLR---------------INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~  224 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKET-FLSA-DDLR---------------INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH  224 (433)
T ss_pred             cceeEeeeeeecCccce-Eeec-ccee---------------eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh
Confidence            57788999999999885 5665 4444               778877654322233333333     346889999998


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCceee-----E----------EeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         740 SEYILATGSADKTVALWDLRNLKLKL-----H----------SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       740 g~~llasgs~Dg~I~IWDl~~~~~~~-----~----------~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ...+++-.+..|+|++.|+|....+-     .          -+..--..|..+.|+++|++++ +-+ =-+|++||+..
T Consensus       225 ~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRD-yltvk~wD~nm  302 (433)
T KOG1354|consen  225 HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRD-YLTVKLWDLNM  302 (433)
T ss_pred             HccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eec-cceeEEEeccc
Confidence            88889999999999999999554311     1          1111224688899999999743 332 26899999965


Q ss_pred             CCcccccccccCCCCccEEEecCccCce---EEEEEccCCCeEEEEEeCCCeEee
Q psy4578         805 IGEEQSTEDAEDGPPELLFIHGGHTAKI---SDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       805 ~~~~~~~~~~~~~~~~~i~~~~~h~~~I---~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ....-.+-.........+..+ -....|   ..++|+.++.+ +.|||..+.+++
T Consensus       303 e~~pv~t~~vh~~lr~kLc~l-YEnD~IfdKFec~~sg~~~~-v~TGsy~n~frv  355 (433)
T KOG1354|consen  303 EAKPVETYPVHEYLRSKLCSL-YENDAIFDKFECSWSGNDSY-VMTGSYNNVFRV  355 (433)
T ss_pred             cCCcceEEeehHhHHHHHHHH-hhccchhheeEEEEcCCcce-EecccccceEEE
Confidence            332211100000000000000 011222   45799999985 669999988886

>KOG2315|consensus

Probab=98.61  E-value=4.6e-06  Score=92.62  Aligned_cols=203  Identities=15%  Similarity=0.259  Sum_probs=128.5

Q ss_pred             ccceeeeEeeccCC-cEEEE-----EeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeC--CCce
Q psy4578         621 LRLLIDVAWHLLHE-SLFGS-----VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA--DKTQ  692 (860)
Q Consensus       621 ~~~V~~v~~sp~~~-~~las-----gs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~--Dg~i  692 (860)
                      ...|+...++|... ..+|+     ++.-+.|+||.+.-......+..-.-....=..+.|++-|.-+|+.++.  |.+ 
T Consensus       165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt-  243 (566)
T KOG2315|consen  165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT-  243 (566)
T ss_pred             ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC-
Confidence            56789999998423 33433     3455689999887332222222111122334568899888876665543  332 


Q ss_pred             eeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCc-EEEEeeCCCcEEEEeCCCCceeeEEeccC
Q psy4578         693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-ILATGSADKTVALWDLRNLKLKLHSFESH  771 (860)
Q Consensus       693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~-llasgs~Dg~I~IWDl~~~~~~~~~~~~h  771 (860)
                           ..+..+...+++.++...   .....+ ...++|.++.|+|+|+. .++-|-.--++.|||++..-  +..+  -
T Consensus       244 -----n~SYYGEq~Lyll~t~g~---s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--v~df--~  310 (566)
T KOG2315|consen  244 -----NASYYGEQTLYLLATQGE---SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--VFDF--P  310 (566)
T ss_pred             -----CccccccceEEEEEecCc---eEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--eEeC--C
Confidence                 223345667888888732   222222 34789999999999974 23445567889999998754  3333  3


Q ss_pred             CCceEEEEEcCCCCCEEEEEECC---CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578         772 KDEIFQVQWSPHNETILASSGTD---RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~D---g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                      .++=+++-|+|.|+. ++.+|.+   |.|.|||+.+.+++....                ...-+-+.|+|||++++ |+
T Consensus       311 egpRN~~~fnp~g~i-i~lAGFGNL~G~mEvwDv~n~K~i~~~~----------------a~~tt~~eW~PdGe~fl-TA  372 (566)
T KOG2315|consen  311 EGPRNTAFFNPHGNI-ILLAGFGNLPGDMEVWDVPNRKLIAKFK----------------AANTTVFEWSPDGEYFL-TA  372 (566)
T ss_pred             CCCccceEECCCCCE-EEEeecCCCCCceEEEeccchhhccccc----------------cCCceEEEEcCCCcEEE-EE
Confidence            567788999999986 5566543   899999999855543332                22345689999999865 54


Q ss_pred             eCCCeEe
Q psy4578         849 SEDNIMQ  855 (860)
Q Consensus       849 s~Dg~Ir  855 (860)
                      ...-.+|
T Consensus       373 TTaPRlr  379 (566)
T KOG2315|consen  373 TTAPRLR  379 (566)
T ss_pred             eccccEE
Confidence            4443333

>KOG4714|consensus

Probab=98.59  E-value=4.2e-07  Score=91.87  Aligned_cols=156  Identities=19%  Similarity=0.281  Sum_probs=104.8

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578         633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDT  712 (860)
Q Consensus       633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl  712 (860)
                      .++-++++..||.+.+++.+..  .+.......-...-.+.+....+.. +.++ .-|.   |+..      ++.+.|++
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~~-i~s~-~~g~---~n~~------d~~~a~~~  166 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGNS-ILSG-GCGN---WNAQ------DNFYANTL  166 (319)
T ss_pred             cCCceEecCCCceEEEEechHH--HhhhhhcccccccccccceeecccE-EecC-Ccce---Eeec------cceeeecc
Confidence            3566899999999999998752  1111111111111222333344542 3333 2222   2211      22677877


Q ss_pred             CCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE
Q psy4578         713 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG  792 (860)
Q Consensus       713 ~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs  792 (860)
                      +..+..  ...... ...|++++-+|..++++++|+.||.+.+||.++...+...+..|..+++.+.|+|..+.-|++++
T Consensus       167 ~p~~t~--~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s  243 (319)
T KOG4714|consen  167 DPIKTL--IPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS  243 (319)
T ss_pred             cccccc--cccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec
Confidence            654221  111112 23399999999999999999999999999999998877888899999999999997665689999


Q ss_pred             CCCcEEEEECCC
Q psy4578         793 TDRRLHVWDLSK  804 (860)
Q Consensus       793 ~Dg~I~iWdl~~  804 (860)
                      .||.+..||..+
T Consensus       244 edGslw~wdas~  255 (319)
T KOG4714|consen  244 EDGSLWHWDAST  255 (319)
T ss_pred             CCCcEEEEcCCC
Confidence            999999999874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.58  E-value=2.3e-05  Score=83.46  Aligned_cols=216  Identities=12%  Similarity=0.147  Sum_probs=135.1

Q ss_pred             hhhhhhhhhcccceeeeEeeccCCcEEEEEeC---CCcEEEEEcCC--CCcccCeeeccCCCCCeeEEEEccCCCeEEEE
Q psy4578         611 RAQICQLLDKLRLLIDVAWHLLHESLFGSVAD---DQKLMIWDTRS--HNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT  685 (860)
Q Consensus       611 ~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~---DG~I~IWd~~~--~~~~~~~~~~~~h~~~V~~l~~sp~g~~llas  685 (860)
                      .....+.....+..+-++|+| +++.|.++..   +|.|.-|.+..  |.. ..+........+.+.++++++|++++.+
T Consensus        29 ~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~~g~~p~yvsvd~~g~~vf~A  106 (346)
T COG2706          29 ELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTLPGSPPCYVSVDEDGRFVFVA  106 (346)
T ss_pred             ccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeeccccCCCCCeEEEECCCCCEEEEE
Confidence            455667777888999999998 6666666543   57888888764  321 2222222223444889999999986666


Q ss_pred             EeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCC----------eEEEEEcCCCCcEEEEeeCCCcEEE
Q psy4578         686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAE----------VNCLSFNPYSEYILATGSADKTVAL  755 (860)
Q Consensus       686 gs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~----------I~sl~~sp~g~~llasgs~Dg~I~I  755 (860)
                      -...|.               |.++-++.............|.+.          +.+..+.|++++++++.=.--.|.+
T Consensus       107 nY~~g~---------------v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~  171 (346)
T COG2706         107 NYHSGS---------------VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL  171 (346)
T ss_pred             EccCce---------------EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence            666666               777777653333333333345544          7889999999974444333457999


Q ss_pred             EeCCCCceee---EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC-cccccccccCCCCccEEEecCccCc
Q psy4578         756 WDLRNLKLKL---HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG-EEQSTEDAEDGPPELLFIHGGHTAK  831 (860)
Q Consensus       756 WDl~~~~~~~---~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~-~~~~~~~~~~~~~~~i~~~~~h~~~  831 (860)
                      |++..+....   ..+ .-...-+.|.|+|++++..+.+--+++|.+|...... .....+...    .+-..+. -...
T Consensus       172 y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~----tlP~dF~-g~~~  245 (346)
T COG2706         172 YDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID----TLPEDFT-GTNW  245 (346)
T ss_pred             EEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec----cCccccC-CCCc
Confidence            9999766421   112 2345678999999999766666789999999998741 111110000    0000011 1234


Q ss_pred             eEEEEEccCCCeEEEEEe
Q psy4578         832 ISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       832 I~~i~~spdg~~Llasgs  849 (860)
                      ..+|..++||++|.++--
T Consensus       246 ~aaIhis~dGrFLYasNR  263 (346)
T COG2706         246 AAAIHISPDGRFLYASNR  263 (346)
T ss_pred             eeEEEECCCCCEEEEecC
Confidence            567788888887665543

>KOG0309|consensus

Probab=98.57  E-value=1.9e-07  Score=105.60  Aligned_cols=206  Identities=22%  Similarity=0.309  Sum_probs=151.0

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-CCCCCeeEEEEccCC--CeEEEEEeCCCceeeecc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYS--EYILATGSADKTQFEVEE  697 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g--~~llasgs~Dg~i~~~~~  697 (860)
                      .+.+.++..+| .++-++.++.-| +.+.|+....  .+...+. --.-.|..+.|+|..  .+.+++.+...       
T Consensus        24 ~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~--~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qk-------   92 (1081)
T KOG0309|consen   24 DGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPF--TPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQK-------   92 (1081)
T ss_pred             cCcccceeecc-ccchhhhhhhcC-eEEEeccCCC--CCceeeeccCcchhcceecccCCCCceeEEecCcch-------
Confidence            35677888888 455556666655 5566776532  2222221 123457788898753  34455555444       


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEE
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ  777 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~  777 (860)
                               -.+|++........-..+.+|+..|+.+.|+|+..-++++++.|..+..||+++...++..+..-......
T Consensus        93 ---------aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asq  163 (1081)
T KOG0309|consen   93 ---------AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQ  163 (1081)
T ss_pred             ---------hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCce
Confidence                     35788865544344556789999999999999999899999999999999999999888888777778889


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee-
Q psy4578         778 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK-  856 (860)
Q Consensus       778 l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI-  856 (860)
                      ++|+-..+. +.+.+..+.|.+||.+.+.             .++...++|...|..++|+.-....+.+++.|++|++ 
T Consensus       164 Vkwnyk~p~-vlasshg~~i~vwd~r~gs-------------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw  229 (1081)
T KOG0309|consen  164 VKWNYKDPN-VLASSHGNDIFVWDLRKGS-------------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW  229 (1081)
T ss_pred             eeecccCcc-hhhhccCCceEEEeccCCC-------------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence            999987777 4456677889999999854             3566777899999999998765446779999999986 


Q ss_pred             ccCC
Q psy4578         857 PFKK  860 (860)
Q Consensus       857 ~f~k  860 (860)
                      .|.|
T Consensus       230 ~y~k  233 (1081)
T KOG0309|consen  230 DYSK  233 (1081)
T ss_pred             cccc
Confidence            6654

>KOG1240|consensus

Probab=98.53  E-value=1.2e-06  Score=104.64  Aligned_cols=170  Identities=12%  Similarity=0.198  Sum_probs=117.9

Q ss_pred             ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCC----CCCeeeecCCCCCeE
Q psy4578         657 SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV----SKPSHTVDAHTAEVN  732 (860)
Q Consensus       657 ~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~----~~~~~~~~~h~~~I~  732 (860)
                      +..+..+..|...+..++.++....+|++||.||+               |++||.+.-..    .+...++..-...+.
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt---------------VKvW~~~k~~~~~~s~rS~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT---------------VKVWNLRKLEGEGGSARSELTYSPEGSRVE 1102 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCce---------------EEEeeehhhhcCcceeeeeEEEeccCCceE
Confidence            35677788899999999998877457999999999               99999875321    122233333467888


Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee------eEEeccC-CC-ceEEEEEcCCCC-CEEEEEECCCcEEEEECC
Q psy4578         733 CLSFNPYSEYILATGSADKTVALWDLRNLKLK------LHSFESH-KD-EIFQVQWSPHNE-TILASSGTDRRLHVWDLS  803 (860)
Q Consensus       733 sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~------~~~~~~h-~~-~V~~l~fsp~g~-~lL~tgs~Dg~I~iWdl~  803 (860)
                      ++...++|.. +|.|+.||.|++.+++.....      ......+ .+ .|..-+|..... .+++.+..-+.|..||++
T Consensus      1103 ~vt~~~~~~~-~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1103 KVTMCGNGDQ-FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred             EEEeccCCCe-EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence            9999999986 889999999999998763211      1111111 22 333344443333 368888899999999999


Q ss_pred             CCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         804 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      +.......+.            ....|.|++++.+|.+.| ++.|+..|.+.
T Consensus      1182 ~~~~~w~lk~------------~~~hG~vTSi~idp~~~W-lviGts~G~l~ 1220 (1431)
T KOG1240|consen 1182 MRHDAWRLKN------------QLRHGLVTSIVIDPWCNW-LVIGTSRGQLV 1220 (1431)
T ss_pred             hhhhHHhhhc------------CccccceeEEEecCCceE-EEEecCCceEE
Confidence            8655443321            123578999999999997 55777777654

>KOG3914|consensus

Probab=98.51  E-value=1.5e-06  Score=93.16  Aligned_cols=166  Identities=13%  Similarity=0.144  Sum_probs=110.8

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN  702 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~  702 (860)
                      +..+..++ ++.++|++..+....++++..... .+..... .-...-+.+.|..+..+.++ +..-|.           
T Consensus        65 ~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v-~dkagD-----------  130 (390)
T KOG3914|consen   65 PALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLV-ADKAGD-----------  130 (390)
T ss_pred             ccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEE-EeecCC-----------
Confidence            33444554 788888888887877888765322 1222221 22333455566555554332 222222           


Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  782 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp  782 (860)
                       ...+.+|....+    ....+-||-..++.++|+||+++ ++++..|+.|++-........-..+-||..-|..++.-+
T Consensus       131 -~~~~di~s~~~~----~~~~~lGhvSml~dVavS~D~~~-IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~  204 (390)
T KOG3914|consen  131 -VYSFDILSADSG----RCEPILGHVSMLLDVAVSPDDQF-IITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD  204 (390)
T ss_pred             -ceeeeeeccccc----CcchhhhhhhhhheeeecCCCCE-EEEecCCceEEEEecCcccchhhhccccHhheeeeeecc
Confidence             122556655542    33355689999999999999985 889999999999776654442223457999999999987


Q ss_pred             CCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578         783 HNETILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       783 ~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                      +.  .|++||.|+++++||+.++++....
T Consensus       205 ~~--~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  205 NY--LLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             Cc--eeeecCCCCcEEEEecccCCccccc
Confidence            55  3889999999999999998887544

>KOG1064|consensus

Probab=98.46  E-value=4.4e-07  Score=111.37  Aligned_cols=160  Identities=16%  Similarity=0.277  Sum_probs=122.8

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      ..|.++.=+| ...+.+||+.||.|++|....+...-+..+ .+ ...|+.+.|+.+|+. +..+..||.          
T Consensus      2209 ~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g-~s~vtr~~f~~qGnk-~~i~d~dg~---------- 2274 (2439)
T KOG1064|consen 2209 ENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AG-NSRVTRSRFNHQGNK-FGIVDGDGD---------- 2274 (2439)
T ss_pred             CceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeec-cC-cchhhhhhhcccCCc-eeeeccCCc----------
Confidence            5677777787 567789999999999999987543222222 22 378999999999986 777877777          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee---CCCcEEEEeCCCCceeeEEeccCCCceEEE
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS---ADKTVALWDLRNLKLKLHSFESHKDEIFQV  778 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs---~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l  778 (860)
                           +.+|.+..    ++....+.|....+...|-.  . ++++++   .++.+.+||..-....-..-.+|.+.++++
T Consensus      2275 -----l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2275 -----LSLWQASP----KPYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVL 2342 (2439)
T ss_pred             -----eeecccCC----cceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEE
Confidence                 99998873    67778888998888888875  3 466654   468899999754322122227899999999


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         779 QWSPHNETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      ++.|... +|++||.+|.|++||++..+..
T Consensus      2343 ~~~P~~q-llisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2343 AYAPKHQ-LLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred             EEcCcce-EEEecCCcCcEEEeehHHHHHH
Confidence            9999887 6899999999999999974443

>KOG2315|consensus

Probab=98.46  E-value=5.7e-06  Score=91.96  Aligned_cols=154  Identities=22%  Similarity=0.390  Sum_probs=104.5

Q ss_pred             ceeeeEeeccCCcEEEEEeC--C---------CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         623 LLIDVAWHLLHESLFGSVAD--D---------QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~--D---------G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      .-..+.|++.+..+|+.++.  |         .++++.+++..   ..... ....++|.++.|+|+|+.+.++-|.--.
T Consensus       219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~---s~~V~-L~k~GPVhdv~W~~s~~EF~VvyGfMPA  294 (566)
T KOG2315|consen  219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE---SVSVP-LLKEGPVHDVTWSPSGREFAVVYGFMPA  294 (566)
T ss_pred             ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc---eEEEe-cCCCCCceEEEECCCCCEEEEEEecccc
Confidence            34568899866666555443  2         35777777631   11222 2347899999999999864444443221


Q ss_pred             eeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC--CCcEEEEeCCCCceeeEEec
Q psy4578         692 QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA--DKTVALWDLRNLKLKLHSFE  769 (860)
Q Consensus       692 i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~--Dg~I~IWDl~~~~~~~~~~~  769 (860)
                                    .+.|||++.    ..+..+  ..++-+++-|+|.|+.++++|-.  -|.|-+||+.+.+. +..+.
T Consensus       295 --------------kvtifnlr~----~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~-i~~~~  353 (566)
T KOG2315|consen  295 --------------KVTIFNLRG----KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL-IAKFK  353 (566)
T ss_pred             --------------eEEEEcCCC----CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh-ccccc
Confidence                          288999875    344443  35677899999999975555543  48999999999665 66666


Q ss_pred             cCCCceEEEEEcCCCCCEEEEEE------CCCcEEEEECCC
Q psy4578         770 SHKDEIFQVQWSPHNETILASSG------TDRRLHVWDLSK  804 (860)
Q Consensus       770 ~h~~~V~~l~fsp~g~~lL~tgs------~Dg~I~iWdl~~  804 (860)
                      ...  .+-+.|+|||++ ++|++      -|+.++||++..
T Consensus       354 a~~--tt~~eW~PdGe~-flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  354 AAN--TTVFEWSPDGEY-FLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             cCC--ceEEEEcCCCcE-EEEEeccccEEecCCeEEEEecC
Confidence            543  445899999998 55665      378999999764

>KOG2041|consensus

Probab=98.44  E-value=1.6e-06  Score=97.73  Aligned_cols=163  Identities=14%  Similarity=0.187  Sum_probs=120.8

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc------------ccCeeeccCCCCCeeEEEEccCCCeEEEEEe
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV------------SKPSHTVDAHTAEVNCLSFNPYSEYILATGS  687 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~------------~~~~~~~~~h~~~V~~l~~sp~g~~llasgs  687 (860)
                      .+....|++|+. ...++++|+.||.++|..+.+...            ...-+++.||.+.|.-+.|+...+. +.+..
T Consensus        13 nnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTTSD   90 (1189)
T ss_pred             CCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-ccccC
Confidence            445788999997 889999999999999998865321            1122567899999999999988775 77887


Q ss_pred             CCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE
Q psy4578         688 ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS  767 (860)
Q Consensus       688 ~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~  767 (860)
                      .+|.               |.+|-+-.+....... -....+-|.+++|+.+|.. ++..-.||.|.+=.+++.+.+-..
T Consensus        91 t~Gl---------------IiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKe  153 (1189)
T KOG2041|consen   91 TSGL---------------IIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKE  153 (1189)
T ss_pred             CCce---------------EEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchh
Confidence            8887               9999887764322211 1234567899999999996 778888999988888776653333


Q ss_pred             eccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         768 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       768 ~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      +++  .....+.|++|.+. +..+-..|.++++|...
T Consensus       154 Lkg--~~l~hv~ws~D~~~-~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  154 LKG--QLLAHVLWSEDLEQ-ALFKKANGETHLYDNQG  187 (1189)
T ss_pred             cch--heccceeecccHHH-HHhhhcCCcEEEecccc
Confidence            443  23457889999885 55666788899988654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.44  E-value=2.4e-05  Score=98.79  Aligned_cols=212  Identities=10%  Similarity=0.140  Sum_probs=127.3

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC-----------------CCCeeEEEEccCCCeEEEE
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH-----------------TAEVNCLSFNPYSEYILAT  685 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h-----------------~~~V~~l~~sp~g~~llas  685 (860)
                      ....++++++++.++++-..++.|+++|..++.    +.++.+-                 -....+++++|++..++++
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa  700 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA  700 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE
Confidence            457889998444445555556789999987642    2221110                 1234689999976667888


Q ss_pred             EeCCCceeeecccccccCCCcEEEEeCCCCCCC-----CCeeeec------CCCCCeEEEEEcCCCCcEEEEeeCCCcEE
Q psy4578         686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVS-----KPSHTVD------AHTAEVNCLSFNPYSEYILATGSADKTVA  754 (860)
Q Consensus       686 gs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~-----~~~~~~~------~h~~~I~sl~~sp~g~~llasgs~Dg~I~  754 (860)
                      .+.++.               |++||..++...     .......      ..-.....++++|++.+++++-+.++.|+
T Consensus       701 d~~~~~---------------I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir  765 (1057)
T PLN02919        701 MAGQHQ---------------IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR  765 (1057)
T ss_pred             ECCCCe---------------EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence            777777               555555443110     0000000      11134567999999987778888889999


Q ss_pred             EEeCCCCceeeEE------------eccC--------CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc
Q psy4578         755 LWDLRNLKLKLHS------------FESH--------KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA  814 (860)
Q Consensus       755 IWDl~~~~~~~~~------------~~~h--------~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~  814 (860)
                      +||+.++...+..            +..+        -....+++++++|. ++++-+.+++|++||..++.........
T Consensus       766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G  844 (1057)
T PLN02919        766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTG  844 (1057)
T ss_pred             EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccC
Confidence            9999876531110            0000        11246889999997 6788888999999998874432111100


Q ss_pred             cCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       815 ~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ..+...- ....+.-....+++++++|+ ++++.+.++.|++
T Consensus       845 ~~G~~dG-~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irv  884 (1057)
T PLN02919        845 KAGFKDG-KALKAQLSEPAGLALGENGR-LFVADTNNSLIRY  884 (1057)
T ss_pred             CcCCCCC-cccccccCCceEEEEeCCCC-EEEEECCCCEEEE
Confidence            0000000 00112234578899999998 7888888888875

>KOG1354|consensus

Probab=98.35  E-value=3.1e-06  Score=88.65  Aligned_cols=181  Identities=14%  Similarity=0.254  Sum_probs=113.2

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC-----CCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH-----TAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h-----~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      .|.--|++++++. ++..++++ .|-.|.+|+++-....-.+..++.+     ..-|++..|+|..-.+++-.+..|+|.
T Consensus       162 aHtyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  162 AHTYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             cceeEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            3445689999997 66666654 5789999998743222222223333     245889999998877888888899833


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCC
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKD  773 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~  773 (860)
                      +.+++..+-.|..-+++.....  .....-+..--..|..+.|+++|++ +++-+ --+|++||+.....++.+++-|..
T Consensus       240 LcDmR~~aLCd~hsKlfEeped--p~~rsffseiIsSISDvKFs~sGry-ilsRD-yltvk~wD~nme~~pv~t~~vh~~  315 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPED--PSSRSFFSEIISSISDVKFSHSGRY-ILSRD-YLTVKLWDLNMEAKPVETYPVHEY  315 (433)
T ss_pred             EeechhhhhhcchhhhhccccC--CcchhhHHHHhhhhhceEEccCCcE-EEEec-cceeEEEeccccCCcceEEeehHh
Confidence            3333322222222222211111  0111112223456889999999997 44433 278999999655555666665531


Q ss_pred             ------------c---eEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         774 ------------E---IFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       774 ------------~---V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                                  .   -..++|+.++.+ +.||+..+.+++++...+.
T Consensus       316 lr~kLc~lYEnD~IfdKFec~~sg~~~~-v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  316 LRSKLCSLYENDAIFDKFECSWSGNDSY-VMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             HHHHHHHHhhccchhheeEEEEcCCcce-EecccccceEEEecCCCCc
Confidence                        2   245889998876 8899999999999966544

>KOG4190|consensus

Probab=98.32  E-value=1.8e-06  Score=94.73  Aligned_cols=180  Identities=16%  Similarity=0.195  Sum_probs=127.1

Q ss_pred             hhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCC----cccCeeeccCCCCCeeEEEEccCCCeEEEEE
Q psy4578         611 RAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLSFNPYSEYILATG  686 (860)
Q Consensus       611 ~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~----~~~~~~~~~~h~~~V~~l~~sp~g~~llasg  686 (860)
                      .-.+..+.+|...|..+.--. +.+-+++++.|.+|++|.++...    ...+..++..|..+|.++.|-.+.++ ++++
T Consensus       725 ~irL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~-i~Sc  802 (1034)
T KOG4190|consen  725 HIRLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRS-IASC  802 (1034)
T ss_pred             eeeeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccce-eeec
Confidence            344666778888888887663 67889999999999999997531    12356678899999999999988876 4443


Q ss_pred             eCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC-CCcEEEE-eeCCCcEEEEeCCCCcee
Q psy4578         687 SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY-SEYILAT-GSADKTVALWDLRNLKLK  764 (860)
Q Consensus       687 s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~-g~~llas-gs~Dg~I~IWDl~~~~~~  764 (860)
                        ||.               |++||.--+.....+..-..| +.+..+..-|+ .+.+++. |+...+|+++|.+.... 
T Consensus       803 --D~g---------------iHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-  863 (1034)
T KOG4190|consen  803 --DGG---------------IHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-  863 (1034)
T ss_pred             --cCc---------------ceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccc-
Confidence              555               999998765322222221222 23333444443 3334444 47889999999998765 


Q ss_pred             eEEe-----ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccc
Q psy4578         765 LHSF-----ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  812 (860)
Q Consensus       765 ~~~~-----~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~  812 (860)
                      ...+     .+..+.+++++..+.|++ ++.|-..|+|.+.|.+++.....+.
T Consensus       864 ~~E~kVcna~~Pna~~R~iaVa~~GN~-lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  864 TCELKVCNAPGPNALTRAIAVADKGNK-LAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             eeeEEeccCCCCchheeEEEeccCcch-hhHHhcCCcEEEEecCCCceeccCC
Confidence            3333     334567899999999997 8888899999999999988776554

>KOG4532|consensus

Probab=98.32  E-value=4.1e-05  Score=78.04  Aligned_cols=183  Identities=14%  Similarity=0.092  Sum_probs=116.9

Q ss_pred             EEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCC
Q psy4578         636 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSH  715 (860)
Q Consensus       636 ~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~  715 (860)
                      -+..++.|.++++.+++-+.....+.. .  .-.+.++++++++++ .++.++...               |..|.+...
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~-~--~~~~ns~~~snd~~~-~~~Vgds~~---------------Vf~y~id~~  190 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHN-Q--NLTQNSLHYSNDPSW-GSSVGDSRR---------------VFRYAIDDE  190 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeec-c--ccceeeeEEcCCCce-EEEecCCCc---------------ceEEEeCCc
Confidence            356678888999998876533222211 1  123889999999996 555556665               666666543


Q ss_pred             CCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeE----EeccCCCceEEEEEcCCCCC-EEEE
Q psy4578         716 NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH----SFESHKDEIFQVQWSPHNET-ILAS  790 (860)
Q Consensus       716 ~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~----~~~~h~~~V~~l~fsp~g~~-lL~t  790 (860)
                      ............+..-.+..|+.... .+|+++.||++.|||+|....+..    +-..|.++++.+.|++-|.. +|..
T Consensus       191 sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~  269 (344)
T KOG4532|consen  191 SEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI  269 (344)
T ss_pred             cceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE
Confidence            21011112222334446788998887 599999999999999998765433    23458899999999986642 3444


Q ss_pred             EECCCcEEEEECCCCCcccccccccCCCCccEEEecCccC-ceEEEEEccCCCeEE
Q psy4578         791 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWVI  845 (860)
Q Consensus       791 gs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~-~I~~i~~spdg~~Ll  845 (860)
                      .-.-+.+++.|+++....+.+.-.++.       ...|.. .|..-+|+.++....
T Consensus       270 sEhfs~~hv~D~R~~~~~q~I~i~~d~-------~~~~~tq~ifgt~f~~~n~s~~  318 (344)
T KOG4532|consen  270 SEHFSRVHVVDTRNYVNHQVIVIPDDV-------ERKHNTQHIFGTNFNNENESND  318 (344)
T ss_pred             ecCcceEEEEEcccCceeeEEecCccc-------cccccccccccccccCCCcccc
Confidence            445689999999997765543321111       122333 377788888776533

>KOG4532|consensus

Probab=98.23  E-value=7.9e-05  Score=76.00  Aligned_cols=178  Identities=10%  Similarity=0.055  Sum_probs=117.1

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578         633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDT  712 (860)
Q Consensus       633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl  712 (860)
                      ...+||.|+..|...+|...+.+.  .......|...|+-+.=..+...-+..++.|.+               +++.++
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~--h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht---------------~k~~~~  145 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDG--HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHT---------------GKTMVV  145 (344)
T ss_pred             cccEEEeccccceeeeecccCccc--ceeeecccccchhhhhhhcccccceeeccCCcc---------------eeEEEE
Confidence            456789999999999999986432  223333444444333322233334666777877               778877


Q ss_pred             CCCCCCCCeeeecCCCC--CeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceee-E-EeccCCCceEEEEEcCCCCCEE
Q psy4578         713 RSHNVSKPSHTVDAHTA--EVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL-H-SFESHKDEIFQVQWSPHNETIL  788 (860)
Q Consensus       713 ~~~~~~~~~~~~~~h~~--~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~-~-~~~~h~~~V~~l~fsp~g~~lL  788 (860)
                      ..+.....     .|..  .+.++.+++++++ +++.+....|..|.+......+ . ........-.+..|+.... .+
T Consensus       146 ~~~s~~~~-----~h~~~~~~ns~~~snd~~~-~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~F  218 (344)
T KOG4532|consen  146 SGDSNKFA-----VHNQNLTQNSLHYSNDPSW-GSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QF  218 (344)
T ss_pred             ecCcccce-----eeccccceeeeEEcCCCce-EEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eE
Confidence            65432111     2322  3789999999996 7777778899999887654322 2 2233445567788998776 49


Q ss_pred             EEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578         789 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW  843 (860)
Q Consensus       789 ~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~  843 (860)
                      |++..||++.|||++.........         ...-..|.+.+..+.|++.|..
T Consensus       219 Av~~Qdg~~~I~DVR~~~tpm~~~---------sstrp~hnGa~R~c~Fsl~g~l  264 (344)
T KOG4532|consen  219 AVVFQDGTCAIYDVRNMATPMAEI---------SSTRPHHNGAFRVCRFSLYGLL  264 (344)
T ss_pred             EEEecCCcEEEEEecccccchhhh---------cccCCCCCCceEEEEecCCCcc
Confidence            999999999999999865432221         1122348899999999987643

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.20  E-value=0.00015  Score=91.76  Aligned_cols=205  Identities=13%  Similarity=0.153  Sum_probs=125.1

Q ss_pred             eeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC--------------CCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578         625 IDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA--------------HTAEVNCLSFNPYSEYILATGSADK  690 (860)
Q Consensus       625 ~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~--------------h~~~V~~l~~sp~g~~llasgs~Dg  690 (860)
                      ..+++++.++.++++-+.++.|++||....    .+..+.+              .-.....++++++++.++++-...+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~----~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~  646 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN----FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH  646 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC----EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence            467788766778888888899999997642    1111111              1123578899988876555554445


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC----------C-------CCCeEEEEEcCCCCcEEEEeeCCCcE
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA----------H-------TAEVNCLSFNPYSEYILATGSADKTV  753 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~----------h-------~~~I~sl~~sp~g~~llasgs~Dg~I  753 (860)
                      .               |+++|..++.    +.++.+          .       -..-.+++++|++..++++.+.++.|
T Consensus       647 ~---------------Ir~id~~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I  707 (1057)
T PLN02919        647 A---------------LREIDFVNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQI  707 (1057)
T ss_pred             e---------------EEEEecCCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeE
Confidence            5               7777765431    111111          0       11235799999665578888889999


Q ss_pred             EEEeCCCCceeeEEecc---------------CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578         754 ALWDLRNLKLKLHSFES---------------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  818 (860)
Q Consensus       754 ~IWDl~~~~~~~~~~~~---------------h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~  818 (860)
                      ++||..++..  ..+.+               .-...+.++|+|+|..++++-+.++.|++||+.++........ ....
T Consensus       708 ~v~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg-~~~~  784 (1057)
T PLN02919        708 WEYNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG-DPTF  784 (1057)
T ss_pred             EEEECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec-cccc
Confidence            9999987653  12211               1124567999999987777778889999999886542110000 0000


Q ss_pred             CccEEEecC--------ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         819 PELLFIHGG--------HTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       819 ~~~i~~~~~--------h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ......+..        .-....+++++++|. ++++.+.++.|++
T Consensus       785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrv  829 (1057)
T PLN02919        785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKK  829 (1057)
T ss_pred             CcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEE
Confidence            000001110        112346889999998 6778888888774

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.14  E-value=0.00026  Score=77.33  Aligned_cols=150  Identities=13%  Similarity=0.174  Sum_probs=113.5

Q ss_pred             eeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEE
Q psy4578         629 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLM  708 (860)
Q Consensus       629 ~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~  708 (860)
                      |++.++++++..|. |...|.+...+-   .+  .-+|.+.|.-..+..++.. ++.|..||-              .+-
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~---~i--qv~~~~~VrY~r~~~~~e~-~vigt~dgD--------------~l~  385 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGY---SI--QVGKKGGVRYRRIQVDPEG-DVIGTNDGD--------------KLG  385 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCe---eE--EcCCCCceEEEEEccCCcc-eEEeccCCc--------------eEE
Confidence            55557888888875 788888876532   22  2367778888888877774 888988883              288


Q ss_pred             EEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEE
Q psy4578         709 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL  788 (860)
Q Consensus       709 iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL  788 (860)
                      |+|..++    .+..+...-+.|.++..+|+|++ ++.+.....+.+.|+.++.. ...-+...+-|+.+.|+|++++ +
T Consensus       386 iyd~~~~----e~kr~e~~lg~I~av~vs~dGK~-~vvaNdr~el~vididngnv-~~idkS~~~lItdf~~~~nsr~-i  458 (668)
T COG4946         386 IYDKDGG----EVKRIEKDLGNIEAVKVSPDGKK-VVVANDRFELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSRW-I  458 (668)
T ss_pred             EEecCCc----eEEEeeCCccceEEEEEcCCCcE-EEEEcCceEEEEEEecCCCe-eEecccccceeEEEEEcCCcee-E
Confidence            9999885    33455667788999999999996 77888888899999999986 2223345578999999999997 6


Q ss_pred             EEEECC----CcEEEEECCCCC
Q psy4578         789 ASSGTD----RRLHVWDLSKIG  806 (860)
Q Consensus       789 ~tgs~D----g~I~iWdl~~~~  806 (860)
                      |-+--+    ..|+++|+...+
T Consensus       459 AYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         459 AYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             EEecCcceeeeeEEEEecCCCe
Confidence            766544    478999998744

>KOG1409|consensus

Probab=98.13  E-value=7.1e-05  Score=78.80  Aligned_cols=208  Identities=18%  Similarity=0.256  Sum_probs=129.9

Q ss_pred             hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC-CCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578         614 ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS-HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ  692 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~-~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i  692 (860)
                      +....++.+.|++...-| ...-+++.+.|.+++||--.+ ++....+.  ...+.+++++.++++.+ .|++|-..|++
T Consensus        17 l~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~--~~mP~~~~~~~y~~e~~-~L~vg~~ngtv   92 (404)
T KOG1409|consen   17 LSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIY--HYMPSPCSAMEYVSESR-RLYVGQDNGTV   92 (404)
T ss_pred             hhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhh--hhCCCCceEeeeeccce-EEEEEEecceE
Confidence            334456667788888887 555688999999999996543 33333332  23467899999999877 58899888883


Q ss_pred             eeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC----------------------
Q psy4578         693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD----------------------  750 (860)
Q Consensus       693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D----------------------  750 (860)
                      ........-           +.   .........|...+..+-|+-...+ +++++.|                      
T Consensus        93 tefs~sedf-----------nk---m~~~r~~~~h~~~v~~~if~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~  157 (404)
T KOG1409|consen   93 TEFALSEDF-----------NK---MTFLKDYLAHQARVSAIVFSLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFETP  157 (404)
T ss_pred             EEEEhhhhh-----------hh---cchhhhhhhhhcceeeEEecCCcee-EEEeccccceEEEeeccCCcccceEeecc
Confidence            333222210           00   0112222334444444444333332 2222222                      


Q ss_pred             -----------------CcEEEEeCCC-CceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccc
Q psy4578         751 -----------------KTVALWDLRN-LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  812 (860)
Q Consensus       751 -----------------g~I~IWDl~~-~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~  812 (860)
                                       |.|.+-.+.. .-..+..+.+|.+.+.+++|.+..+ +|.+|..|..+.+||+--.       
T Consensus       158 ~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~-------  229 (404)
T KOG1409|consen  158 ASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGR-------  229 (404)
T ss_pred             CCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCC-------
Confidence                             2222221111 1113677889999999999999776 6899999999999998753       


Q ss_pred             cccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       813 ~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                            ........+|...|..+..-+--+. +.+++.||.|-
T Consensus       230 ------~g~~~el~gh~~kV~~l~~~~~t~~-l~S~~edg~i~  265 (404)
T KOG1409|consen  230 ------KGTAYELQGHNDKVQALSYAQHTRQ-LISCGEDGGIV  265 (404)
T ss_pred             ------cceeeeeccchhhhhhhhhhhhhee-eeeccCCCeEE
Confidence                  2345666788888888887777664 55777776654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.12  E-value=0.00011  Score=83.90  Aligned_cols=176  Identities=11%  Similarity=0.090  Sum_probs=105.8

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCC--cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQ--KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG--~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      .+|..+...++...+....+......|+|++..++++.+.+|  .|.++|+.++.    ...+..+.+......|+|||+
T Consensus       214 ~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~----~~~LT~~~~~d~~p~~SPDG~  289 (419)
T PRK04043        214 TLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT----LTQITNYPGIDVNGNFVEDDK  289 (419)
T ss_pred             EEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc----EEEcccCCCccCccEECCCCC
Confidence            455556656655555555556677889996556666665554  56666776643    223333333344568999999


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC--------Cc
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD--------KT  752 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D--------g~  752 (860)
                      .++.+....|.             ..|.++|+.+++..+ + +..+.  .  ...|+|+|+++++++...        ..
T Consensus       290 ~I~F~Sdr~g~-------------~~Iy~~dl~~g~~~r-l-t~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~  350 (419)
T PRK04043        290 RIVFVSDRLGY-------------PNIFMKKLNSGSVEQ-V-VFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFN  350 (419)
T ss_pred             EEEEEECCCCC-------------ceEEEEECCCCCeEe-C-ccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcE
Confidence            87777655442             347888887653211 1 11121  1  248999999866665543        36


Q ss_pred             EEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCc--EEEEECCC
Q psy4578         753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR--LHVWDLSK  804 (860)
Q Consensus       753 I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~--I~iWdl~~  804 (860)
                      |.+.|+.++..  ..+... .......|+|||+.++++....+.  +.+.++..
T Consensus       351 I~v~d~~~g~~--~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        351 LYLISTNSDYI--RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             EEEEECCCCCe--EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            78888887764  333332 233358899999986666554444  44455443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.11  E-value=4.2e-05  Score=79.19  Aligned_cols=167  Identities=20%  Similarity=0.326  Sum_probs=110.4

Q ss_pred             cceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCc----------------cc-----------------------Cee
Q psy4578         622 RLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNV----------------SK-----------------------PSH  661 (860)
Q Consensus       622 ~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~----------------~~-----------------------~~~  661 (860)
                      ..|..+.|..+ +...++..+.|.+|++|.+.....                ..                       +.+
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r  165 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR  165 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence            56899999754 344577778899999998753200                00                       000


Q ss_pred             -eccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCC-----CCCeEEEE
Q psy4578         662 -TVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAH-----TAEVNCLS  735 (860)
Q Consensus       662 -~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h-----~~~I~sl~  735 (860)
                       ....|...+.++.|+.|... ++++ +|-.               |.+|++......-.+..++.|     +.-|++..
T Consensus       166 vyaNaH~yhiNSiS~NsD~et-~lSa-DdLr---------------INLWnl~i~D~sFnIVDiKP~nmeeLteVItSae  228 (460)
T COG5170         166 VYANAHPYHINSISFNSDKET-LLSA-DDLR---------------INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAE  228 (460)
T ss_pred             eccccceeEeeeeeecCchhe-eeec-ccee---------------eeeccccccCCceEEEeccCccHHHHHHHHhhcc
Confidence             11456777888999888775 5554 3444               777877654332333344444     34588999


Q ss_pred             EcCCCCcEEEEeeCCCcEEEEeCCCCceee---------------EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4578         736 FNPYSEYILATGSADKTVALWDLRNLKLKL---------------HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW  800 (860)
Q Consensus       736 ~sp~g~~llasgs~Dg~I~IWDl~~~~~~~---------------~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iW  800 (860)
                      |+|....++.-.+..|.|++-|+|....+.               .-+.+-...|..+.|+++|++ +++ -.=-++++|
T Consensus       229 Fhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry-Ils-Rdyltvkiw  306 (460)
T COG5170         229 FHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY-ILS-RDYLTVKIW  306 (460)
T ss_pred             cCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcE-EEE-eccceEEEE
Confidence            999887778888889999999999544311               111223356888999999996 333 334689999


Q ss_pred             ECCCCCc
Q psy4578         801 DLSKIGE  807 (860)
Q Consensus       801 dl~~~~~  807 (860)
                      |++....
T Consensus       307 Dvnm~k~  313 (460)
T COG5170         307 DVNMAKN  313 (460)
T ss_pred             ecccccC
Confidence            9987543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.05  E-value=0.00015  Score=82.01  Aligned_cols=129  Identities=16%  Similarity=0.259  Sum_probs=86.2

Q ss_pred             EEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCC
Q psy4578         707 LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET  786 (860)
Q Consensus       707 I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~  786 (860)
                      -.+|+....+......+--...+.|.|++++|+... ++.|+.||+|.+||...+..   .+....-..+.++|+|+|. 
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t---~~~ka~~~P~~iaWHp~ga-  312 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVT---LLAKAEFIPTLIAWHPDGA-  312 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCee---eeeeecccceEEEEcCCCc-
Confidence            345666544322222223356788999999999995 88999999999999877643   2333456678999999997 


Q ss_pred             EEEEEECCCcEEEEECCCCCcccccccccCCCCccEEE---ecCccCceEEEEEccCC
Q psy4578         787 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI---HGGHTAKISDFSWNPNE  841 (860)
Q Consensus       787 lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~---~~~h~~~I~~i~~spdg  841 (860)
                      ++++|+..|.+.+||+.-.......... +..+.....   +-.+...+..+.|++..
T Consensus       313 i~~V~s~qGelQ~FD~ALspi~~qLlsE-d~~P~~~L~Ls~yf~~~~~L~~iqW~~~~  369 (545)
T PF11768_consen  313 IFVVGSEQGELQCFDMALSPIKMQLLSE-DATPKSTLQLSKYFRVSSSLVHIQWAPAP  369 (545)
T ss_pred             EEEEEcCCceEEEEEeecCccceeeccc-cCCCccEEeeehhccCcchhheeEeccCC
Confidence            5889999999999998765443322221 222222222   22455667888898543

>KOG2695|consensus

Probab=98.02  E-value=1.8e-05  Score=83.18  Aligned_cols=162  Identities=18%  Similarity=0.242  Sum_probs=113.4

Q ss_pred             eeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCC
Q psy4578         626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQ  705 (860)
Q Consensus       626 ~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg  705 (860)
                      .++|+-.-..+-++.+.+-.|-+-|++++-.    +.+. -.+.|.++.|...++ ++..|..+|.              
T Consensus       216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~----qsf~-sksDVfAlQf~~s~n-Lv~~GcRnge--------------  275 (425)
T KOG2695|consen  216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQ----QSFQ-SKSDVFALQFAGSDN-LVFNGCRNGE--------------  275 (425)
T ss_pred             hhhhhhccceeeecccccceeEEEEeecccc----cccc-cchhHHHHHhcccCC-eeEecccCCc--------------
Confidence            3467642222335556677899999998532    2332 467899999988777 7899999998              


Q ss_pred             cEEEEeCCCCCC--CCCeeeecCCCCCeEEEEEcC-CCCcEEEEeeCCCcEEEEeCCCCce--eeEEeccCCCceEEEE-
Q psy4578         706 KLMIWDTRSHNV--SKPSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTVALWDLRNLKL--KLHSFESHKDEIFQVQ-  779 (860)
Q Consensus       706 ~I~iwDl~~~~~--~~~~~~~~~h~~~I~sl~~sp-~g~~llasgs~Dg~I~IWDl~~~~~--~~~~~~~h~~~V~~l~-  779 (860)
                       |..+|++....  ..+... --|.+.|+++..-. ++.+ |.+.+.+|+|.+||+|..++  .+.++.+|.+.-.-+- 
T Consensus       276 -I~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q~-LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~  352 (425)
T KOG2695|consen  276 -IFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQK-LMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPA  352 (425)
T ss_pred             -EEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccce-EeeccCcCceeEeeehhhhcccceeeeeccccccccccc
Confidence             88888876521  122222 34888999988776 5665 77788999999999997654  3678888876544333 


Q ss_pred             -EcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578         780 -WSPHNETILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       780 -fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                       ..+... +++++|+|...+||.++.+....++
T Consensus       353 ~v~~eeg-~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  353 HVKEEEG-SIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             ccccccc-eEEEccCeeEEEEEecccCceeecc
Confidence             344455 4788999999999999987665444

>KOG2314|consensus

Probab=97.98  E-value=0.00049  Score=76.66  Aligned_cols=233  Identities=12%  Similarity=0.189  Sum_probs=139.7

Q ss_pred             eeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeC-----------CCcEEEEEcCCCCc
Q psy4578         588 FFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVAD-----------DQKLMIWDTRSHNV  656 (860)
Q Consensus       588 ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~-----------DG~I~IWd~~~~~~  656 (860)
                      ....|.+..+.|...+..|... ....++-+.|. .|.-+.||| +.++|+|-+.           ...++|||+.+|..
T Consensus       218 wSP~GTYL~t~Hk~GI~lWGG~-~f~r~~RF~Hp-~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l  294 (698)
T KOG2314|consen  218 WSPKGTYLVTFHKQGIALWGGE-SFDRIQRFYHP-GVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL  294 (698)
T ss_pred             ecCCceEEEEEeccceeeecCc-cHHHHHhccCC-CceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccch
Confidence            3345888888888877655544 44444455554 688899999 7889988652           24799999999765


Q ss_pred             ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578         657 SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  736 (860)
Q Consensus       657 ~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~  736 (860)
                      .+....+.+....-.-+.||-|+.+ +|.-..++                |.||+..+-.   .+..-.-.-..|....|
T Consensus       295 krsF~~~~~~~~~WP~frWS~DdKy-~Arm~~~s----------------isIyEtpsf~---lld~Kslki~gIr~Fsw  354 (698)
T KOG2314|consen  295 KRSFPVIKSPYLKWPIFRWSHDDKY-FARMTGNS----------------ISIYETPSFM---LLDKKSLKISGIRDFSW  354 (698)
T ss_pred             hcceeccCCCccccceEEeccCCce-eEEeccce----------------EEEEecCcee---eecccccCCccccCccc
Confidence            4444443332222234789999997 55555454                8888876531   11111112356788899


Q ss_pred             cCCCCcEEEEee--CC---CcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE---------CCCcEEEEEC
Q psy4578         737 NPYSEYILATGS--AD---KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG---------TDRRLHVWDL  802 (860)
Q Consensus       737 sp~g~~llasgs--~D---g~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs---------~Dg~I~iWdl  802 (860)
                      +|.+. +||-=+  .+   ..+.+-.+-+.+. +++..-|.-.=..+.|-.+|.++.+-..         .-..+.|+.+
T Consensus       355 sP~~~-llAYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri  432 (698)
T KOG2314|consen  355 SPTSN-LLAYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI  432 (698)
T ss_pred             CCCcc-eEEEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence            99876 455321  11   2355555555544 4444444433445778888886433221         1123445555


Q ss_pred             CCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeeccC
Q psy4578         803 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPFK  859 (860)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~f~  859 (860)
                      +....             ++... .-...|..++|-|.|..+.+..+++....+.|.
T Consensus       433 reKdI-------------pve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY  475 (698)
T KOG2314|consen  433 REKDI-------------PVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFY  475 (698)
T ss_pred             eccCC-------------Cceee-ecchheeeeeeccCCCeEEEEEccccccceeEE
Confidence            44221             11111 235678999999999988888888777666664

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.97  E-value=0.00099  Score=69.28  Aligned_cols=174  Identities=16%  Similarity=0.303  Sum_probs=105.3

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc--cCeeec-cCCCCCeeEEEEccCC-----CeEEEEEeCCCceee
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS--KPSHTV-DAHTAEVNCLSFNPYS-----EYILATGSADKTQFE  694 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~--~~~~~~-~~h~~~V~~l~~sp~g-----~~llasgs~Dg~i~~  694 (860)
                      .-..++|+| ++.+||.+...|+|+++|+......  .+.... ..-...|..+.|.+..     .+.|.+-..+|.   
T Consensus        45 QWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~---  120 (282)
T PF15492_consen   45 QWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ---  120 (282)
T ss_pred             hheEEEECC-CCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccce---
Confidence            356899998 8999999999999999999753211  000001 1123456666665422     223444444554   


Q ss_pred             ecccccccCCCcEEEEeCCC--CCCCCCeee--ecC-CCCCeEEEEEcCCCCcEEEEeeCCC----------cEEEEeCC
Q psy4578         695 VEEEEEENYDQKLMIWDTRS--HNVSKPSHT--VDA-HTAEVNCLSFNPYSEYILATGSADK----------TVALWDLR  759 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~--~~~~~~~~~--~~~-h~~~I~sl~~sp~g~~llasgs~Dg----------~I~IWDl~  759 (860)
                                  ++-|-+..  .+......+  +.. +...|+++.|+|..+.+++.|+...          -+..|.+-
T Consensus       121 ------------L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL  188 (282)
T PF15492_consen  121 ------------LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRIL  188 (282)
T ss_pred             ------------eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEc
Confidence                        55554422  111122222  222 4678999999998875455544322          25566553


Q ss_pred             CCcee-------------------------eEEe---ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578         760 NLKLK-------------------------LHSF---ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       760 ~~~~~-------------------------~~~~---~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                      +....                         ...+   ......|..|..||||. +|++...+|.|.+|++.+......+
T Consensus       189 ~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  189 SDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             CCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcchhhccc
Confidence            32110                         0011   11346789999999998 5999999999999999998776665


Q ss_pred             cc
Q psy4578         812 ED  813 (860)
Q Consensus       812 ~~  813 (860)
                      ..
T Consensus       268 ~~  269 (282)
T PF15492_consen  268 KQ  269 (282)
T ss_pred             ch
Confidence            43

>KOG1275|consensus

Probab=97.97  E-value=7.3e-05  Score=87.34  Aligned_cols=159  Identities=16%  Similarity=0.203  Sum_probs=118.0

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY  703 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~  703 (860)
                      |.-++.   +++++.+|...|+|.+-|..+   .+.+.++..|.+.+.++...  |+ +++++|..+.      ...-..
T Consensus       180 v~imR~---Nnr~lf~G~t~G~V~LrD~~s---~~~iht~~aHs~siSDfDv~--GN-lLitCG~S~R------~~~l~~  244 (1118)
T KOG1275|consen  180 VTIMRY---NNRNLFCGDTRGTVFLRDPNS---FETIHTFDAHSGSISDFDVQ--GN-LLITCGYSMR------RYNLAM  244 (1118)
T ss_pred             eEEEEe---cCcEEEeecccceEEeecCCc---Cceeeeeeccccceeeeecc--CC-eEEEeecccc------cccccc
Confidence            544444   578899999999999999988   57789999999999887764  66 5777776654      112234


Q ss_pred             CCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce---eeEEeccCCCceEEEEE
Q psy4578         704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL---KLHSFESHKDEIFQVQW  780 (860)
Q Consensus       704 dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~---~~~~~~~h~~~V~~l~f  780 (860)
                      |.-|+|||+++-....++.   -+.++ .-+.|+|.-...+++++..|...+-|..+...   .+.......+.+.++++
T Consensus       245 D~FvkVYDLRmmral~PI~---~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDi  320 (1118)
T KOG1275|consen  245 DPFVKVYDLRMMRALSPIQ---FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDI  320 (1118)
T ss_pred             cchhhhhhhhhhhccCCcc---cccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEe
Confidence            6669999999874433333   23222 56789998776789999999999999444332   23444455667999999


Q ss_pred             cCCCCCEEEEEECCCcEEEEEC
Q psy4578         781 SPHNETILASSGTDRRLHVWDL  802 (860)
Q Consensus       781 sp~g~~lL~tgs~Dg~I~iWdl  802 (860)
                      +++|+. ++.|..+|.|.+|.-
T Consensus       321 Ssn~~a-lafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  321 SSNGDA-LAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cCCCce-EEEecccCcEeeecC
Confidence            999985 899999999999983

>KOG4714|consensus

Probab=97.96  E-value=3.6e-05  Score=78.14  Aligned_cols=76  Identities=28%  Similarity=0.457  Sum_probs=66.6

Q ss_pred             CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEe
Q psy4578         668 AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG  747 (860)
Q Consensus       668 ~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasg  747 (860)
                      ..|++++-+|..++++++|+.||.               +.+||.+..  ..+...+..|..+|.-+-|||....-|+++
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~---------------~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~  242 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGI---------------VGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNPEHLFTC  242 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCe---------------EEEEEcccc--cchHHHHHHhhhhhhheeccCCCchheeEe
Confidence            349999999999999999999998               999999986  356677889999999999999765558899


Q ss_pred             eCCCcEEEEeCCC
Q psy4578         748 SADKTVALWDLRN  760 (860)
Q Consensus       748 s~Dg~I~IWDl~~  760 (860)
                      +.||.+..||..+
T Consensus       243 sedGslw~wdas~  255 (319)
T KOG4714|consen  243 SEDGSLWHWDAST  255 (319)
T ss_pred             cCCCcEEEEcCCC
Confidence            9999999999875

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.95  E-value=0.0011  Score=70.04  Aligned_cols=195  Identities=15%  Similarity=0.181  Sum_probs=117.9

Q ss_pred             eeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEc-cCCCeEEEEEeCCCceeeecccccccCC
Q psy4578         626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN-PYSEYILATGSADKTQFEVEEEEEENYD  704 (860)
Q Consensus       626 ~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~s-p~g~~llasgs~Dg~i~~~~~~~~~~~d  704 (860)
                      ++.|.+.++.++++-...+.|..|+..++..    ..+.. .. ...+++. +++.  ++.+...+              
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~----~~~~~-~~-~~G~~~~~~~g~--l~v~~~~~--------------   61 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV----EVIDL-PG-PNGMAFDRPDGR--LYVADSGG--------------   61 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE----EEEES-SS-EEEEEEECTTSE--EEEEETTC--------------
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE----EEEec-CC-CceEEEEccCCE--EEEEEcCc--------------
Confidence            5789876788888877889999999987421    11211 22 6777777 5544  45555555              


Q ss_pred             CcEEEEeCCCCCCCCCeeeec--C-CCCCeEEEEEcCCCCcEEEEeeCC--------CcEEEEeCCCCceeeEEeccCCC
Q psy4578         705 QKLMIWDTRSHNVSKPSHTVD--A-HTAEVNCLSFNPYSEYILATGSAD--------KTVALWDLRNLKLKLHSFESHKD  773 (860)
Q Consensus       705 g~I~iwDl~~~~~~~~~~~~~--~-h~~~I~sl~~sp~g~~llasgs~D--------g~I~IWDl~~~~~~~~~~~~h~~  773 (860)
                        +.++|..+++. ..+....  . .....+.+++.|+|. +.++....        |.|..++.. +..  ......-.
T Consensus        62 --~~~~d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~~~~~  134 (246)
T PF08450_consen   62 --IAVVDPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVADGLG  134 (246)
T ss_dssp             --EEEEETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEEEEES
T ss_pred             --eEEEecCCCcE-EEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeE--EEEecCcc
Confidence              56668777532 2222321  1 345678999999999 56665543        557777777 332  22333345


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                      ..+.++|+|+++.++++-+..+.|..+++........       ............+..-.++++.+|+..++..+.+++
T Consensus       135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I  207 (246)
T PF08450_consen  135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS-------NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRI  207 (246)
T ss_dssp             SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE-------EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEE
T ss_pred             cccceEECCcchheeecccccceeEEEecccccccee-------eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEE
Confidence            6789999999997677778889999999875322100       011222223323457789999999843433344444


Q ss_pred             Eee
Q psy4578         854 MQK  856 (860)
Q Consensus       854 IrI  856 (860)
                      .++
T Consensus       208 ~~~  210 (246)
T PF08450_consen  208 VVF  210 (246)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1008|consensus

Probab=97.94  E-value=3.5e-06  Score=94.71  Aligned_cols=169  Identities=21%  Similarity=0.403  Sum_probs=113.3

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEe----CCCcEEEEEcCCCCc-ccCeeecc-CCCCCeeEEEEccCCCeEEEEEeCC
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVA----DDQKLMIWDTRSHNV-SKPSHTVD-AHTAEVNCLSFNPYSEYILATGSAD  689 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs----~DG~I~IWd~~~~~~-~~~~~~~~-~h~~~V~~l~~sp~g~~llasgs~D  689 (860)
                      .+.++....++++|++.+.+.||+|-    .|..+.|||+.++-. .+.-..+. +......+++|-.+.+ ++.+|...
T Consensus        97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~s  175 (783)
T KOG1008|consen   97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTS  175 (783)
T ss_pred             ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc-hhhccccc
Confidence            34556678999999998888888874    467899999987511 11111111 2334566889986555 68888877


Q ss_pred             CceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC-CCCcEEEEeeCCCcEEEEe-CCCCceeeEE
Q psy4578         690 KTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTVALWD-LRNLKLKLHS  767 (860)
Q Consensus       690 g~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp-~g~~llasgs~Dg~I~IWD-l~~~~~~~~~  767 (860)
                      ..               ++++|++....  ....  -.+..+..+...| .+.| +++ ..||.|.+|| .+..+.++..
T Consensus       176 r~---------------~~ifdlRqs~~--~~~s--vnTk~vqG~tVdp~~~nY-~cs-~~dg~iAiwD~~rnienpl~~  234 (783)
T KOG1008|consen  176 RS---------------VHIFDLRQSLD--SVSS--VNTKYVQGITVDPFSPNY-FCS-NSDGDIAIWDTYRNIENPLQI  234 (783)
T ss_pred             ch---------------hhhhhhhhhhh--hhhh--hhhhhcccceecCCCCCc-eec-cccCceeeccchhhhccHHHH
Confidence            77               99999984311  1111  1345667788888 4454 544 5599999999 5555544433


Q ss_pred             eccCC----CceEEEEEcCCCCCEEEEEECC-CcEEEEECCCCC
Q psy4578         768 FESHK----DEIFQVQWSPHNETILASSGTD-RRLHVWDLSKIG  806 (860)
Q Consensus       768 ~~~h~----~~V~~l~fsp~g~~lL~tgs~D-g~I~iWdl~~~~  806 (860)
                      .....    ..+..++|+|...-++++++.| ++|+.+|+....
T Consensus       235 i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~  278 (783)
T KOG1008|consen  235 ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVG  278 (783)
T ss_pred             HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccC
Confidence            33222    2489999999887778888755 789999988643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.91  E-value=0.00018  Score=81.49  Aligned_cols=120  Identities=17%  Similarity=0.262  Sum_probs=81.6

Q ss_pred             cceeeeEeeccCCcEEEEE----eCCCc----EEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         622 RLLIDVAWHLLHESLFGSV----ADDQK----LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasg----s~DG~----I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      ....++.|+..++..+.+.    +.+|.    -.+|++..++..+...+--.....|.|++++|+... ++.|+.||+  
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k-LvlGC~DgS--  282 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK-LVLGCEDGS--  282 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce-EEEEecCCe--
Confidence            3445667775455555443    23443    345666543322222222346788999999999985 899999999  


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL  763 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~  763 (860)
                                   |.+||...+.     .......-..+.++|||+|. ++++|+..|.+.+||+.-...
T Consensus       283 -------------iiLyD~~~~~-----t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  283 -------------IILYDTTRGV-----TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             -------------EEEEEcCCCe-----eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCcc
Confidence                         9999997652     22223445678999999999 699999999999999875443

>KOG1912|consensus

Probab=97.88  E-value=0.00093  Score=77.09  Aligned_cols=217  Identities=17%  Similarity=0.183  Sum_probs=136.2

Q ss_pred             ccchhhhhhhhh-cccceeeeEeecc-----------CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEE
Q psy4578         608 NKTRAQICQLLD-KLRLLIDVAWHLL-----------HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  675 (860)
Q Consensus       608 n~~~~~l~~l~~-~~~~V~~v~~sp~-----------~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~  675 (860)
                      +....+..+... |...|+.+.|.|.           ..-++|++...|.|.+||...+   ..+..+..|..++..++|
T Consensus        41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~---s~~~~l~~~~~~~qdl~W  117 (1062)
T KOG1912|consen   41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA---SVINWLSHSNDSVQDLCW  117 (1062)
T ss_pred             ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh---hhhhhhcCCCcchhheee
Confidence            444555555555 4567999999872           1235788888999999999874   445667788899999999


Q ss_pred             cc---CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc
Q psy4578         676 NP---YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  752 (860)
Q Consensus       676 sp---~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~  752 (860)
                      -+   +.++++++-....+               +.+|+..+|   ..+...........|+.+.|-...-++.-+..|.
T Consensus       118 ~~~rd~Srd~LlaIh~ss~---------------lvLwntdtG---~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~  179 (1062)
T KOG1912|consen  118 VPARDDSRDVLLAIHGSST---------------LVLWNTDTG---EKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGF  179 (1062)
T ss_pred             eeccCcchheeEEecCCcE---------------EEEEEccCC---ceeeccccCCcceeeeeeCCCCcceEEEEccCce
Confidence            75   44456666655666               889998887   4444444445667788998854433555555677


Q ss_pred             EEEEeCCCCce---e---eEEeccCCC-------------------------ceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         753 VALWDLRNLKL---K---LHSFESHKD-------------------------EIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       753 I~IWDl~~~~~---~---~~~~~~h~~-------------------------~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      +.+-+.-....   +   ++.-..|..                         ..-.++|+|.-++++ -......+.++|
T Consensus       180 vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l-fi~~prellv~d  258 (1062)
T KOG1912|consen  180 VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL-FITFPRELLVFD  258 (1062)
T ss_pred             EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE-EEEeccceEEEc
Confidence            77766532211   0   111111111                         012357788877744 455677899999


Q ss_pred             CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe-EEEEEeCCCeEeeccCC
Q psy4578         802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-VICSVSEDNIMQKPFKK  860 (860)
Q Consensus       802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~-Llasgs~Dg~IrI~f~k  860 (860)
                      +.-..+.              ....-..+.+.-+.|-|+++. .+.+.-.||.+.|.-+|
T Consensus       259 le~~~~l--------------~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  259 LEYECCL--------------AVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             chhhcee--------------EEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence            8874332              222223344555677776543 56677778877765443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.88  E-value=1.8e-05  Score=57.71  Aligned_cols=37  Identities=32%  Similarity=0.700  Sum_probs=34.0

Q ss_pred             CeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578         720 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD  757 (860)
Q Consensus       720 ~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD  757 (860)
                      .+.++.+|.+.|++++|+|++. .+++|+.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            4668899999999999999988 499999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2041|consensus

Probab=97.84  E-value=0.00064  Score=77.50  Aligned_cols=206  Identities=12%  Similarity=0.170  Sum_probs=131.7

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      +-+|.+.|.-+.|+- +...|-|+..+|-|.||-+-.+.-... ..-....+-|.+++|+.+|.. ++....||.|.+-.
T Consensus        67 LeGH~~sV~vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EE-MiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   67 LEGHNASVMVVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEE-MINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGS  143 (1189)
T ss_pred             hccCcceEEEEEecc-ccccccccCCCceEEEEeeecccHHHH-HhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEe
Confidence            457788999999996 667788899999999999877532111 112234567899999999986 55555666554433


Q ss_pred             cccc--------------------------ccCCCcEEEEeCCCCCC----CCC----eeeecCCCCCeEEEEEc-----
Q psy4578         697 EEEE--------------------------ENYDQKLMIWDTRSHNV----SKP----SHTVDAHTAEVNCLSFN-----  737 (860)
Q Consensus       697 ~~~~--------------------------~~~dg~I~iwDl~~~~~----~~~----~~~~~~h~~~I~sl~~s-----  737 (860)
                      .++.                          +...|.+++||....-.    ...    ...+......|-.+.|.     
T Consensus       144 vdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~  223 (1189)
T KOG2041|consen  144 VDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ  223 (1189)
T ss_pred             eccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence            3322                          23568888888654210    001    01112222336667774     


Q ss_pred             ---CCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCC---------cEEEEECCCC
Q psy4578         738 ---PYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR---------RLHVWDLSKI  805 (860)
Q Consensus       738 ---p~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg---------~I~iWdl~~~  805 (860)
                         |+.+ .++.+-.+|.+.|-.-.+...++..-.  .-.+..+.|+++|. +|+.||.|.         .|+++..   
T Consensus       224 ~v~pdrP-~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fysp---  296 (1189)
T KOG2041|consen  224 PVPPDRP-RLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYSP---  296 (1189)
T ss_pred             cCCCCCC-EEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCc-EEEEccCcccccCccccceEEEecc---
Confidence               4666 589999999998876655554343333  36788999999998 488887552         3333322   


Q ss_pred             CcccccccccCCCCccEEEecCccCceEEEEEccCCCeE
Q psy4578         806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWV  844 (860)
Q Consensus       806 ~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~L  844 (860)
                                  .+..+..+......|++++|-..|-.+
T Consensus       297 ------------~G~i~gtlkvpg~~It~lsWEg~gLri  323 (1189)
T KOG2041|consen  297 ------------YGHIVGTLKVPGSCITGLSWEGTGLRI  323 (1189)
T ss_pred             ------------chhheEEEecCCceeeeeEEcCCceEE
Confidence                        234555666667789999998877643

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.84  E-value=0.00073  Score=84.18  Aligned_cols=216  Identities=15%  Similarity=0.261  Sum_probs=128.6

Q ss_pred             cccceeeeEeeccCCcEEEEEeC---C---CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVAD---D---QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~---D---G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      ..+.-..++|-. ||.+||+.+-   +   ..+|||+-+.    ....+-..-.+--.+++|.|.|+ ++|+.-.-+.  
T Consensus       208 ~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~ReG----~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~--  279 (928)
T PF04762_consen  208 WDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSREG----ELQSTSEPVDGLEGALSWRPSGN-LIASSQRLPD--  279 (928)
T ss_pred             cCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCCc----eEEeccccCCCccCCccCCCCCC-EEEEEEEcCC--
Confidence            334567899996 8889888764   2   5799998762    22222222234446789999998 4666543221  


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec--cC
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE--SH  771 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~--~h  771 (860)
                                ...|.+|.-+.-....-...+......|..+.|++++. +||..-.|. |.+|-..+..+.++.--  ..
T Consensus       280 ----------~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~  347 (928)
T PF04762_consen  280 ----------RHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS  347 (928)
T ss_pred             ----------CcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence                      23377776543322121112224566889999999999 687766554 99999988876444322  12


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECC----CCCccc--------ccccc---------cCCCCccEEEecCccC
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLS----KIGEEQ--------STEDA---------EDGPPELLFIHGGHTA  830 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~----~~~~~~--------~~~~~---------~~~~~~~i~~~~~h~~  830 (860)
                      ...+..+.|+|.....|...+.+|.+..+++.    .+....        .+++.         ..-++......-....
T Consensus       348 ~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~  427 (928)
T PF04762_consen  348 SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPS  427 (928)
T ss_pred             CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCC
Confidence            33455699999887777777777777665432    221110        00000         0011222222223467


Q ss_pred             ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         831 KISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       831 ~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|.+++|++++.. +++-..||.+.+
T Consensus       428 ~v~~vaf~~~~~~-~avl~~d~~l~~  452 (928)
T PF04762_consen  428 PVNDVAFSPSNSR-FAVLTSDGSLSI  452 (928)
T ss_pred             CcEEEEEeCCCCe-EEEEECCCCEEE
Confidence            8999999999875 566667775543

>KOG0882|consensus

Probab=97.84  E-value=0.00014  Score=79.04  Aligned_cols=218  Identities=9%  Similarity=0.037  Sum_probs=141.0

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeC-CCceeeec
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA-DKTQFEVE  696 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~-Dg~i~~~~  696 (860)
                      +-|.+.|+.|.-.  -.+++.+++-||.++.|.-..-.....+..+..|-+.+.+++.+.++. ++.|++. |..     
T Consensus         6 ymhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs-----   77 (558)
T KOG0882|consen    6 YMHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW-LFRSVEDPDHS-----   77 (558)
T ss_pred             hcccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce-eEeeccCcccc-----
Confidence            3355556665544  578999999999999998653222344566677888999999998886 6888776 887     


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCC--CcEEEEeeCCCcEEEEeCCCCceee-EEeccCCC
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS--EYILATGSADKTVALWDLRNLKLKL-HSFESHKD  773 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g--~~llasgs~Dg~I~IWDl~~~~~~~-~~~~~h~~  773 (860)
                                ++++|+.+-.....+.. ..-.+.+ ++..+|..  ..+.++...+|.+.++|-....+.. ..-.-|.+
T Consensus        78 ----------~KvfDvEn~DminmiKL-~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s  145 (558)
T KOG0882|consen   78 ----------VKVFDVENFDMINMIKL-VDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS  145 (558)
T ss_pred             ----------eeEEEeeccchhhhccc-ccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence                      99999887533222211 1112222 22223321  1233444567999999998776433 34446999


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCC-CCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSK-IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~-~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      +|.++.+++.+.. +++....|-|.-|.... .+.........-....-++.........+++.|+|+|.. +++-+.|.
T Consensus       146 PV~~i~y~qa~Ds-~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~Dr  223 (558)
T KOG0882|consen  146 PVKKIRYNQAGDS-AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDR  223 (558)
T ss_pred             ceEEEEeeccccc-eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc-ccccCccc
Confidence            9999999999986 77888889999999874 111110000000011122333344566789999999995 77888999


Q ss_pred             eEeec
Q psy4578         853 IMQKP  857 (860)
Q Consensus       853 ~IrI~  857 (860)
                      .|++.
T Consensus       224 kVR~F  228 (558)
T KOG0882|consen  224 KVRGF  228 (558)
T ss_pred             EEEEE
Confidence            99873

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.83  E-value=0.00084  Score=74.08  Aligned_cols=229  Identities=11%  Similarity=0.019  Sum_probs=120.6

Q ss_pred             eeccchhhhhhhhhcccceeeeEeeccCCcEEEEEe---------CCCcEEEEEcCCCCcccCeeeccC-------CCCC
Q psy4578         606 LENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVA---------DDQKLMIWDTRSHNVSKPSHTVDA-------HTAE  669 (860)
Q Consensus       606 l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs---------~DG~I~IWd~~~~~~~~~~~~~~~-------h~~~  669 (860)
                      +-+....++.....-...-..+ ++|++..+.++.+         .+..|.+||..+.+.   +..+.-       ....
T Consensus        31 ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~---~~~i~~p~~p~~~~~~~  106 (352)
T TIGR02658        31 TIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP---IADIELPEGPRFLVGTY  106 (352)
T ss_pred             EEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE---EeEEccCCCchhhccCc
Confidence            3344444544444333333334 8985555556666         688999999998543   333221       1223


Q ss_pred             eeEEEEccCCCeEEEEEeC-CCceeeecccccc------------------------cCCCcEEEEeCCCCCCCCCeee-
Q psy4578         670 VNCLSFNPYSEYILATGSA-DKTQFEVEEEEEE------------------------NYDQKLMIWDTRSHNVSKPSHT-  723 (860)
Q Consensus       670 V~~l~~sp~g~~llasgs~-Dg~i~~~~~~~~~------------------------~~dg~I~iwDl~~~~~~~~~~~-  723 (860)
                      ...++++|+|++++++--. +..+-+++.....                        ..||......+..... ....+ 
T Consensus       107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~-~~~~~~  185 (352)
T TIGR02658       107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN-PKIKPT  185 (352)
T ss_pred             cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc-eEEeee
Confidence            3478999999986655533 6665555444331                        0112211111111100 00000 


Q ss_pred             --ecCCCCCeE-EEEEcC-CCCcEEEEeeCCCcEEEEeCCCCcee----eEEec-------cCCCceEEEEEcCCCCCEE
Q psy4578         724 --VDAHTAEVN-CLSFNP-YSEYILATGSADKTVALWDLRNLKLK----LHSFE-------SHKDEIFQVQWSPHNETIL  788 (860)
Q Consensus       724 --~~~h~~~I~-sl~~sp-~g~~llasgs~Dg~I~IWDl~~~~~~----~~~~~-------~h~~~V~~l~fsp~g~~lL  788 (860)
                        +.+....+. .-.+.+ +|..+++| .. |+|.+.|+......    ...+.       -..+...-++++++|+.++
T Consensus       186 ~vf~~~~~~v~~rP~~~~~dg~~~~vs-~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       186 EVFHPEDEYLINHPAYSNKSGRLVWPT-YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeecCCccccccCCceEcCCCcEEEEe-cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence              101000000 002344 77754443 33 99999996543221    11111       1233444599999998866


Q ss_pred             EEE---------ECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC-eEEEEEeCCCeEee
Q psy4578         789 ASS---------GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVSEDNIMQK  856 (860)
Q Consensus       789 ~tg---------s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~-~Llasgs~Dg~IrI  856 (860)
                      +..         ...+.|.++|..+.+...              ... -...+..++++|||+ .++++...++.|.|
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~--------------~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsV  326 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLR--------------KIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYI  326 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEE--------------EEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence            533         122579999988854432              221 134788999999999 77777767776654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1008|consensus

Probab=97.83  E-value=1.1e-05  Score=90.78  Aligned_cols=208  Identities=17%  Similarity=0.270  Sum_probs=132.4

Q ss_pred             ccceeeeEeeccCC-cEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         621 LRLLIDVAWHLLHE-SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       621 ~~~V~~v~~sp~~~-~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      ...+.|++++-..+ .+++.|..+|.|.+-..+.... .......++...+++++|++-+...||+|- |..        
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-Ss~E~tp~~ar~Ct~lAwneLDtn~LAagl-dkh--------  125 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-SSAEVTPGYARPCTSLAWNELDTNHLAAGL-DKH--------  125 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCccc-ccceecccccccccccccccccHHHHHhhh-hhh--------
Confidence            35678888765333 6789999999999998876432 223445678889999999997666677763 332        


Q ss_pred             cccCCCcEEEEeCCCCCC-CCCeeeecC-CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEE
Q psy4578         700 EENYDQKLMIWDTRSHNV-SKPSHTVDA-HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ  777 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~-~~~~~~~~~-h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~  777 (860)
                        ..+..+.|||+.+.-. +.....+.+ ......+++|-.+.+ ++.+|.....++++|+|........+  .+..+..
T Consensus       126 --rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG  200 (783)
T KOG1008|consen  126 --RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQG  200 (783)
T ss_pred             --cccCCccceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhh--hhhhccc
Confidence              1233499999987511 111112222 344566899997776 68899988999999999543212222  2345667


Q ss_pred             EEEcC-CCCCEEEEEECCCcEEEEE-CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         778 VQWSP-HNETILASSGTDRRLHVWD-LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       778 l~fsp-~g~~lL~tgs~Dg~I~iWd-l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      +..+| .+.+ + +...||.|.+|| .++.+....         ..+...+.....+..++|+|...-++++.+.|...
T Consensus       201 ~tVdp~~~nY-~-cs~~dg~iAiwD~~rnienpl~---------~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~t  268 (783)
T KOG1008|consen  201 ITVDPFSPNY-F-CSNSDGDIAIWDTYRNIENPLQ---------IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSIT  268 (783)
T ss_pred             ceecCCCCCc-e-eccccCceeeccchhhhccHHH---------HHhhCCCCcccceeeEEeccCCcchhhhhccCcce
Confidence            77888 4443 4 555699999999 444222111         11111112234588999999777677777776543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.83  E-value=0.004  Score=65.84  Aligned_cols=194  Identities=11%  Similarity=0.054  Sum_probs=116.7

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec--cC-CCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV--DA-HTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~--~~-h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      ..++.+...++.+ +.+..+ .+.++|..+++. ..+...  .. .....+++++.|+|+ +.++........       
T Consensus        42 ~~G~~~~~~~g~l-~v~~~~-~~~~~d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~-------  110 (246)
T PF08450_consen   42 PNGMAFDRPDGRL-YVADSG-GIAVVDPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGAS-------  110 (246)
T ss_dssp             EEEEEEECTTSEE-EEEETT-CEEEEETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTT-------
T ss_pred             CceEEEEccCCEE-EEEEcC-ceEEEecCCCcE-EEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccc-------
Confidence            6677777335554 444554 456669887543 222222  11 345688999999998 566655433200       


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce------eeEEeccCCCc
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL------KLHSFESHKDE  774 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~------~~~~~~~h~~~  774 (860)
                      ....|.+..++.. ++    +......-...+.++|+|+++.++++-+..+.|..||+.....      ....+....+.
T Consensus       111 ~~~~g~v~~~~~~-~~----~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~  185 (246)
T PF08450_consen  111 GIDPGSVYRIDPD-GK----VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGY  185 (246)
T ss_dssp             CGGSEEEEEEETT-SE----EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCE
T ss_pred             cccccceEEECCC-Ce----EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcC
Confidence            0001457667666 31    1222223455689999999997777888889999999864322      11222222335


Q ss_pred             eEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE-ccCCCeEEEEEe
Q psy4578         775 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW-NPNEPWVICSVS  849 (860)
Q Consensus       775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~-spdg~~Llasgs  849 (860)
                      .-.+++..+|. +.++.-..+.|.++|.. ++.              +....--...+++++| -++...|++|.+
T Consensus       186 pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~--------------~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  186 PDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKL--------------LREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EEEEEEBTTS--EEEEEETTTEEEEEETT-SCE--------------EEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCcceEcCCCC-EEEEEcCCCEEEEECCC-ccE--------------EEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence            78899999997 56666678999999976 332              2222222347899999 477777887764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4190|consensus

Probab=97.82  E-value=3.5e-05  Score=84.83  Aligned_cols=169  Identities=15%  Similarity=0.190  Sum_probs=112.4

Q ss_pred             eeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCC----CCCCeeeecCCCCCeEEEE
Q psy4578         660 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLS  735 (860)
Q Consensus       660 ~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~----~~~~~~~~~~h~~~I~sl~  735 (860)
                      ++.+.+|...|..++--.+.+ -+++++.|.+               |++|.++...    ......+++.|+.+|.++.
T Consensus       728 L~nf~GH~~~iRai~AidNEN-SFiSASkDKT---------------VKLWSik~EgD~~~tsaCQfTY~aHkk~i~~ig  791 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNEN-SFISASKDKT---------------VKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIG  791 (1034)
T ss_pred             eecccCcHHHhHHHHhccccc-ceeeccCCce---------------EEEEEeccccCccccceeeeEhhhccCccccee
Confidence            466788998888877654444 3899999999               9999987532    1235567889999999999


Q ss_pred             EcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe--ccCCCceEEEEEcC--CCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578         736 FNPYSEYILATGSADKTVALWDLRNLKLKLHSF--ESHKDEIFQVQWSP--HNETILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       736 ~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~--~~h~~~V~~l~fsp--~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                      |-.+.++ ++  +.||.|.+||.--++. +.+.  ....+.+..+..-+  +...+++.|+...+++++|.+..+....+
T Consensus       792 fL~~lr~-i~--ScD~giHlWDPFigr~-Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~  867 (1034)
T KOG4190|consen  792 FLADLRS-IA--SCDGGIHLWDPFIGRL-LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL  867 (1034)
T ss_pred             eeeccce-ee--eccCcceeecccccch-hHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeE
Confidence            9988876 44  5589999999866654 2221  11222333333333  34444444478899999999986544332


Q ss_pred             ccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeec
Q psy4578         812 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKP  857 (860)
Q Consensus       812 ~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~  857 (860)
                      .         +....+-.+.+.+++..+.|+++.++-+.+.++.++
T Consensus       868 k---------Vcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LD  904 (1034)
T KOG4190|consen  868 K---------VCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILD  904 (1034)
T ss_pred             E---------eccCCCCchheeEEEeccCcchhhHHhcCCcEEEEe
Confidence            2         111234456688999999999876666665555544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.81  E-value=5.3e-05  Score=55.23  Aligned_cols=36  Identities=36%  Similarity=0.797  Sum_probs=33.6

Q ss_pred             eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         765 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       765 ~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      +..+.+|.+.|++++|+|++.. +++|+.|++|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~-~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNF-LASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSE-EEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEeccccc-ceeeCCCCEEEEEC
Confidence            6788999999999999999875 89999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914|consensus

Probab=97.81  E-value=0.00015  Score=78.13  Aligned_cols=134  Identities=18%  Similarity=0.214  Sum_probs=89.0

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeC---CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVAD---DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~---DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      .+..+.++.++.....-...-+++.|... ......+..   ...+.+|....    .+....-||-..+++++|+||++
T Consensus        90 ~~~~~~~~~kl~~~~~v~~~~~ai~~~~~-~~sv~v~dkagD~~~~di~s~~~----~~~~~~lGhvSml~dVavS~D~~  164 (390)
T KOG3914|consen   90 DYRENPKGAKLLDVSCVPKRPTAISFIRE-DTSVLVADKAGDVYSFDILSADS----GRCEPILGHVSMLLDVAVSPDDQ  164 (390)
T ss_pred             EEecCCCcceeeeEeecccCcceeeeeec-cceEEEEeecCCceeeeeecccc----cCcchhhhhhhhhheeeecCCCC
Confidence            33334433444444444445566666653 333333333   34455555443    22345568999999999999998


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeee-ecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT-VDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR  759 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~-~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~  759 (860)
                      + ++++..|+.               |++-.....   ..+.. .-||+.-|..++.-++.  .|++||.|+++++||++
T Consensus       165 ~-IitaDRDEk---------------IRvs~ypa~---f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  165 F-IITADRDEK---------------IRVSRYPAT---FVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRLWDIT  223 (390)
T ss_pred             E-EEEecCCce---------------EEEEecCcc---cchhhhccccHhheeeeeeccCc--eeeecCCCCcEEEEecc
Confidence            5 899999998               776655433   22222 34799999999998765  48899999999999999


Q ss_pred             CCce
Q psy4578         760 NLKL  763 (860)
Q Consensus       760 ~~~~  763 (860)
                      +++.
T Consensus       224 sgk~  227 (390)
T KOG3914|consen  224 SGKL  227 (390)
T ss_pred             cCCc
Confidence            9987

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.79  E-value=0.00019  Score=74.51  Aligned_cols=220  Identities=17%  Similarity=0.255  Sum_probs=130.1

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCC--cccCeeeccCCC------------CCeeEEEEccC-CCeEEEE
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN--VSKPSHTVDAHT------------AEVNCLSFNPY-SEYILAT  685 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~--~~~~~~~~~~h~------------~~V~~l~~sp~-g~~llas  685 (860)
                      ...|+++.|.- .|.++++|...|.|.+|.-+...  ..+....+++|.            ..|..+.|..+ ++.-++.
T Consensus        26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            45689999986 78999999999999999875421  012233345554            35788888754 4445666


Q ss_pred             EeCCCceeeecccccc--------cC-------CC------cEEEEeCCCCC---CCCCee-eecCCCCCeEEEEEcCCC
Q psy4578         686 GSADKTQFEVEEEEEE--------NY-------DQ------KLMIWDTRSHN---VSKPSH-TVDAHTAEVNCLSFNPYS  740 (860)
Q Consensus       686 gs~Dg~i~~~~~~~~~--------~~-------dg------~I~iwDl~~~~---~~~~~~-~~~~h~~~I~sl~~sp~g  740 (860)
                      .+.|.++.+|......        -.       .|      .+++=.+....   ...+.. ....|.--|.++.++.+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            7788884444332210        00       00      00000000000   000011 114577788999999988


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCcee--eEEeccCC-----CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc---
Q psy4578         741 EYILATGSADKTVALWDLRNLKLK--LHSFESHK-----DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS---  810 (860)
Q Consensus       741 ~~llasgs~Dg~I~IWDl~~~~~~--~~~~~~h~-----~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~---  810 (860)
                      .. +++ +.|=.|.+|++.-....  +...+.|.     ..|++..|+|....++.-.+..|.|++-|++.......   
T Consensus       185 et-~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         185 ET-LLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             he-eee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            75 544 45778999988644331  22333443     46889999998777787888899999999985332211   


Q ss_pred             -cccccCCCCccEEEecCccCceEEEEEccCCCeEE
Q psy4578         811 -TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI  845 (860)
Q Consensus       811 -~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Ll  845 (860)
                       +....++  .-...+.+-...|.++.|+++|+|++
T Consensus       263 lfe~~~D~--v~~~ff~eivsSISD~kFs~ngryIl  296 (460)
T COG5170         263 LFELTIDG--VDVDFFEEIVSSISDFKFSDNGRYIL  296 (460)
T ss_pred             hhhhccCc--ccchhHHHHhhhhcceEEcCCCcEEE
Confidence             1111111  11112233456789999999999754

>KOG1645|consensus

Probab=97.78  E-value=0.00058  Score=73.50  Aligned_cols=81  Identities=14%  Similarity=0.150  Sum_probs=65.1

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      -+..+..-|.+++|+|.+..++..++.+.+|+|.|+++.   ..+..+..+ ..+++++|+-+..+.+..|...|.|+++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy  263 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY  263 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence            344555679999999977778999999999999999983   445555555 7899999999988889999999996666


Q ss_pred             ccccc
Q psy4578         696 EEEEE  700 (860)
Q Consensus       696 ~~~~~  700 (860)
                      +.+..
T Consensus       264 D~R~~  268 (463)
T KOG1645|consen  264 DMRQP  268 (463)
T ss_pred             EccCC
Confidence            65543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.77  E-value=0.00053  Score=78.08  Aligned_cols=175  Identities=15%  Similarity=0.197  Sum_probs=108.4

Q ss_pred             eccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCC---CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEE
Q psy4578         607 ENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADD---QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  683 (860)
Q Consensus       607 ~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~D---G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ll  683 (860)
                      .+........+......+..-+|+|+...+....-..   ..+.++++.++.... +..+.+   .-..-+|+|||++++
T Consensus       178 ~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~~~g---~~~~P~fspDG~~l~  253 (425)
T COG0823         178 GDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILNFNG---NNGAPAFSPDGSKLA  253 (425)
T ss_pred             EccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce-eeccCC---ccCCccCCCCCCEEE
Confidence            3333333444445556788889998655544443322   358999998865432 333333   344568999999999


Q ss_pred             EEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc--EEEEeCCCC
Q psy4578         684 ATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT--VALWDLRNL  761 (860)
Q Consensus       684 asgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~--I~IWDl~~~  761 (860)
                      .+...||.             ..|.++|+.+....    .+....+.-+.=.|+|+|++++++.+..|.  |.++|....
T Consensus       254 f~~~rdg~-------------~~iy~~dl~~~~~~----~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         254 FSSSRDGS-------------PDIYLMDLDGKNLP----RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             EEECCCCC-------------ccEEEEcCCCCcce----ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence            99988886             34777788776422    222222333367899999998888888887  445566655


Q ss_pred             ceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCc--EEEEECCC
Q psy4578         762 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR--LHVWDLSK  804 (860)
Q Consensus       762 ~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~--I~iWdl~~  804 (860)
                      ..  ..+....+.-..-.|+|+|+++++....+|.  |.+.|+.+
T Consensus       317 ~~--~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         317 QV--TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             ce--eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence            54  3333233333377899999986655544555  55555544

>KOG1912|consensus

Probab=97.76  E-value=0.00074  Score=77.86  Aligned_cols=157  Identities=13%  Similarity=0.199  Sum_probs=117.1

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC-----------CCeEEEEEeCCCc
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY-----------SEYILATGSADKT  691 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-----------g~~llasgs~Dg~  691 (860)
                      .-.++.|+|  +.++|-|+. ..|.+-|..+   .+.++.+.-|...|+.+.|.|.           ..-+++++...|.
T Consensus        17 N~~A~Dw~~--~GLiAygsh-slV~VVDs~s---~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr   90 (1062)
T KOG1912|consen   17 NRNAADWSP--SGLIAYGSH-SLVSVVDSRS---LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR   90 (1062)
T ss_pred             cccccccCc--cceEEEecC-ceEEEEehhh---hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence            356888997  667777775 4788889887   5678888889999999999873           2234566666665


Q ss_pred             eeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC---CCCcEEEEeeCCCcEEEEeCCCCceeeEEe
Q psy4578         692 QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP---YSEYILATGSADKTVALWDLRNLKLKLHSF  768 (860)
Q Consensus       692 i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp---~g~~llasgs~Dg~I~IWDl~~~~~~~~~~  768 (860)
                                     |.+||...+   ..+..+..|...+..++|-|   +.++++++-....++-+|+..++.. +-.+
T Consensus        91 ---------------Iil~d~~~~---s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~  151 (1062)
T KOG1912|consen   91 ---------------IILVDFVLA---SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-FWKY  151 (1062)
T ss_pred             ---------------EEEEEehhh---hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-eecc
Confidence                           999999886   55566777888899999866   3445677777788999999999986 5555


Q ss_pred             ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         769 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       769 ~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ........|+.+.|....-+..-|..|.+-+-+.-.
T Consensus       152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~  187 (1062)
T KOG1912|consen  152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG  187 (1062)
T ss_pred             ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence            555667888999996544455666677777766543

>KOG1275|consensus

Probab=97.76  E-value=0.00045  Score=80.97  Aligned_cols=184  Identities=20%  Similarity=0.266  Sum_probs=128.3

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578         633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDT  712 (860)
Q Consensus       633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl  712 (860)
                      ++..++.|+-...+..+|+++.   +..+......+.|+-+..+  ++ .+.+|...|+               |.+-|.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~---~e~r~~~v~a~~v~imR~N--nr-~lf~G~t~G~---------------V~LrD~  204 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTE---KETRTTNVSASGVTIMRYN--NR-NLFCGDTRGT---------------VFLRDP  204 (1118)
T ss_pred             CCcceeecchhhheeeeecccc---eeeeeeeccCCceEEEEec--Cc-EEEeecccce---------------EEeecC
Confidence            4566777777778888999874   2233332233345555543  45 5889998888               988898


Q ss_pred             CCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC---------CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCC
Q psy4578         713 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA---------DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH  783 (860)
Q Consensus       713 ~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~---------Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~  783 (860)
                      ++.   +.++++.+|++.|..+..+  |+ +|++|+.         |..|+|||+|..+. +.-..-+.++ .-+.|+|.
T Consensus       205 ~s~---~~iht~~aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Ps  276 (1118)
T KOG1275|consen  205 NSF---ETIHTFDAHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPS  276 (1118)
T ss_pred             CcC---ceeeeeeccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhccc
Confidence            876   7888999999999887665  66 5777764         56689999998765 3333333333 45788887


Q ss_pred             CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         784 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       784 g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      -...++.++..|...+-|..+....          ..-+.........+.+++++++|. .++.|..+|.|.+
T Consensus       277 l~t~~~V~S~sGq~q~vd~~~lsNP----------~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~  338 (1118)
T KOG1275|consen  277 LTTRLAVTSQSGQFQFVDTATLSNP----------PAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNL  338 (1118)
T ss_pred             ccceEEEEecccceeeccccccCCC----------ccceeEEccCCCcceeEEecCCCc-eEEEecccCcEee
Confidence            6666889999999999996553321          122233333445699999999999 5778888888764

>KOG2695|consensus

Probab=97.75  E-value=7.8e-05  Score=78.53  Aligned_cols=143  Identities=15%  Similarity=0.165  Sum_probs=103.0

Q ss_pred             eeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc--cCeeeccCCCCCeeEEEEcc-CCCeE
Q psy4578         606 LENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS--KPSHTVDAHTAEVNCLSFNP-YSEYI  682 (860)
Q Consensus       606 l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~--~~~~~~~~h~~~V~~l~~sp-~g~~l  682 (860)
                      +-+..++ ..+.++..+.|.+..|.. .++++..|+.+|.|...|++.+..+  .+... -.|...|+++..-. ++++ 
T Consensus       238 L~nvetg-~~qsf~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q~-  313 (425)
T KOG2695|consen  238 LTNVETG-HQQSFQSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQK-  313 (425)
T ss_pred             EEEeecc-cccccccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccce-
Confidence            3344333 345566788999999995 6899999999999999999865322  22222 35889999998876 5665 


Q ss_pred             EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE--cCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578         683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF--NPYSEYILATGSADKTVALWDLRN  760 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~--sp~g~~llasgs~Dg~I~IWDl~~  760 (860)
                      +.+.+.+|.               |++||.+.-+....+.+..||...-.-+-+  ++... ++++++.|...+||.++.
T Consensus       314 LmaS~M~gk---------------ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~  377 (425)
T KOG2695|consen  314 LMASDMTGK---------------IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDS  377 (425)
T ss_pred             EeeccCcCc---------------eeEeeehhhhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEeccc
Confidence            666667887               999999987655667888888654333322  44445 477899999999999998


Q ss_pred             CceeeEEec
Q psy4578         761 LKLKLHSFE  769 (860)
Q Consensus       761 ~~~~~~~~~  769 (860)
                      +.. +.+..
T Consensus       378 ghL-l~tip  385 (425)
T KOG2695|consen  378 GHL-LCTIP  385 (425)
T ss_pred             Cce-eeccC
Confidence            876 44443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.73  E-value=0.0032  Score=78.60  Aligned_cols=197  Identities=15%  Similarity=0.248  Sum_probs=112.5

Q ss_pred             eeeecceeecccceeEEEEeeccchhhhhhhhhc-ccceeeeEeeccCCcEEEEEeC---CCcEEEEEcCCCCcccCeee
Q psy4578         587 NFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDK-LRLLIDVAWHLLHESLFGSVAD---DQKLMIWDTRSHNVSKPSHT  662 (860)
Q Consensus       587 ~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~-~~~V~~v~~sp~~~~~lasgs~---DG~I~IWd~~~~~~~~~~~~  662 (860)
                      .++++.+.....+....+.+|+.+ +.+...... .+--.+++|.| .|+++|+...   ...|.+|.-+.-+.+.-...
T Consensus       222 ~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~  299 (928)
T PF04762_consen  222 EYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR  299 (928)
T ss_pred             cEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC
Confidence            344444443222335666677765 333333332 23346889999 7888888764   34566776554222222222


Q ss_pred             ccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeec-CCCCCeEEEEEcCCCC
Q psy4578         663 VDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSE  741 (860)
Q Consensus       663 ~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~-~h~~~I~sl~~sp~g~  741 (860)
                      +......|..+.|++++. +||....|.                |.+|...+-.. -....+. .....+..+.|+|...
T Consensus       300 ~~~~~~~v~~l~Wn~ds~-iLAv~~~~~----------------vqLWt~~NYHW-YLKqei~~~~~~~~~~~~Wdpe~p  361 (928)
T PF04762_consen  300 FDPEEEKVIELAWNSDSE-ILAVWLEDR----------------VQLWTRSNYHW-YLKQEIRFSSSESVNFVKWDPEKP  361 (928)
T ss_pred             CCCCCceeeEEEECCCCC-EEEEEecCC----------------ceEEEeeCCEE-EEEEEEEccCCCCCCceEECCCCC
Confidence            234567899999999998 677766555                67776655321 0011111 1223344477777666


Q ss_pred             cEEEEeeCCCcEEEEeC----CCC---------------------------ce--e--eEEeccCCCceEEEEEcCCCCC
Q psy4578         742 YILATGSADKTVALWDL----RNL---------------------------KL--K--LHSFESHKDEIFQVQWSPHNET  786 (860)
Q Consensus       742 ~llasgs~Dg~I~IWDl----~~~---------------------------~~--~--~~~~~~h~~~V~~l~fsp~g~~  786 (860)
                      ..|..++.+|.+..++.    ..+                           ..  +  ...+. ....|.+++|++++..
T Consensus       362 ~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~  440 (928)
T PF04762_consen  362 LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSR  440 (928)
T ss_pred             CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCe
Confidence            55666665565554432    111                           00  0  11111 3468999999999875


Q ss_pred             EEEEEECCCcEEEEECCCC
Q psy4578         787 ILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       787 lL~tgs~Dg~I~iWdl~~~  805 (860)
                       +++-..||.|.+|.....
T Consensus       441 -~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  441 -FAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             -EEEEECCCCEEEEEecCC
Confidence             788889999999986553

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.69  E-value=0.0021  Score=71.34  Aligned_cols=167  Identities=14%  Similarity=0.184  Sum_probs=106.5

Q ss_pred             ccceeeeEeecc-CCcEEEE-----EeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         621 LRLLIDVAWHLL-HESLFGS-----VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       621 ~~~V~~v~~sp~-~~~~las-----gs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      ...|...+|+|. +...||.     ++.++.+++|.+..+.   .+.+..-....-..+.|++.|.++++-.-.+-    
T Consensus       173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s---~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~----  245 (561)
T COG5354         173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS---VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHT----  245 (561)
T ss_pred             ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC---eeeeeeeEeecccEEEEecCCceEEEEEEEee----
Confidence            467889999995 2233443     4578899999997532   22222222233457899999998665442221    


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCc-EEEEeeCCCcEEEEeCCCCceeeEEeccCCC
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-ILATGSADKTVALWDLRNLKLKLHSFESHKD  773 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~-llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~  773 (860)
                       .......+...+.+++++...    +.....-.+.|...+|.|.++. .+++|-.+-++.++|+++.-  ...+  ...
T Consensus       246 -ksnKsyfgesnLyl~~~~e~~----i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl--~~~~--Pe~  316 (561)
T COG5354         246 -KSNKSYFGESNLYLLRITERS----IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL--RFYF--PEQ  316 (561)
T ss_pred             -ecccceeccceEEEEeecccc----cceeccccccceeeeecccCCceeEEecccccceeecccccce--EEec--CCc
Confidence             111222344668999988532    2222245789999999998875 33445578899999999863  2222  334


Q ss_pred             ceEEEEEcCCCCCEEEEEECC---CcEEEEECCC
Q psy4578         774 EIFQVQWSPHNETILASSGTD---RRLHVWDLSK  804 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~D---g~I~iWdl~~  804 (860)
                      .=+.+.|+|.++++| .+|.|   |.+.+||...
T Consensus       317 ~rNT~~fsp~~r~il-~agF~nl~gni~i~~~~~  349 (561)
T COG5354         317 KRNTIFFSPHERYIL-FAGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             ccccccccCcccEEE-EecCCccccceEEeccCC
Confidence            455678999999754 55543   7899999765

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.67  E-value=0.0033  Score=67.26  Aligned_cols=204  Identities=13%  Similarity=0.109  Sum_probs=124.3

Q ss_pred             eEeeccCCcEEEEEe-----CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc--c
Q psy4578         627 VAWHLLHESLFGSVA-----DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE--E  699 (860)
Q Consensus       627 v~~sp~~~~~lasgs-----~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~--~  699 (860)
                      -+|++ ++++|++.-     ..|.|-|||...+  ...+..+..|.-....+.+.|||+.| +++. .|. .-..-.  .
T Consensus        56 g~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tL-vVAN-GGI-~Thpd~GR~  129 (305)
T PF07433_consen   56 GVFSP-DGRLLYTTENDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETL-VVAN-GGI-ETHPDSGRA  129 (305)
T ss_pred             EEEcC-CCCEEEEeccccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEE-EEEc-CCC-ccCcccCce
Confidence            46887 677777754     3588999999843  56677777788778899999999764 4331 121 000000  0


Q ss_pred             ---cccCCCcEEEEeCCCCCCCCCeeee--cCCCCCeEEEEEcCCCCcEEEEeeCCC-------cEEEEeCCCCceee--
Q psy4578         700 ---EENYDQKLMIWDTRSHNVSKPSHTV--DAHTAEVNCLSFNPYSEYILATGSADK-------TVALWDLRNLKLKL--  765 (860)
Q Consensus       700 ---~~~~dg~I~iwDl~~~~~~~~~~~~--~~h~~~I~sl~~sp~g~~llasgs~Dg-------~I~IWDl~~~~~~~--  765 (860)
                         -..=+..+...|..+++.... ..+  ..|...|..++++++|. +++..-..|       .+-+++....-..+  
T Consensus       130 kLNl~tM~psL~~ld~~sG~ll~q-~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~  207 (305)
T PF07433_consen  130 KLNLDTMQPSLVYLDARSGALLEQ-VELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLLPA  207 (305)
T ss_pred             ecChhhcCCceEEEecCCCceeee-eecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceeccC
Confidence               012234567777777743222 123  34777899999999987 343332222       14444433321100  


Q ss_pred             --EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578         766 --HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW  843 (860)
Q Consensus       766 --~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~  843 (860)
                        .....-.+.+-+|+++++|..+.+|+-..|++.+||..++.......                -..+..++-.+++  
T Consensus       208 p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----------------l~D~cGva~~~~~--  269 (305)
T PF07433_consen  208 PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----------------LPDACGVAPTDDG--  269 (305)
T ss_pred             ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----------------cCceeeeeecCCc--
Confidence              01223457899999999999877788899999999999865443221                2345566666665  


Q ss_pred             EEEEEeCCCeEee
Q psy4578         844 VICSVSEDNIMQK  856 (860)
Q Consensus       844 Llasgs~Dg~IrI  856 (860)
                      +++|.+....+.+
T Consensus       270 f~~ssG~G~~~~~  282 (305)
T PF07433_consen  270 FLVSSGQGQLIRL  282 (305)
T ss_pred             eEEeCCCccEEEc
Confidence            4666666666554

>KOG1645|consensus

Probab=97.65  E-value=0.00083  Score=72.37  Aligned_cols=168  Identities=12%  Similarity=0.146  Sum_probs=107.0

Q ss_pred             EEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeec
Q psy4578         646 LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD  725 (860)
Q Consensus       646 I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~  725 (860)
                      +++.+..+   .+....+.++...|.+++|+|..+-++..++.+..               |+|.|+++.   ..+..+.
T Consensus       175 v~~l~~~~---fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk---------------iki~dlet~---~~vssy~  233 (463)
T KOG1645|consen  175 VQKLESHD---FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK---------------IKIMDLETS---CVVSSYI  233 (463)
T ss_pred             eEEeccCC---cchhhcccccchhhhhhccCccccceeeeeccCce---------------EEEEecccc---eeeehee
Confidence            44444433   23344566788899999999988877888988888               999999986   4445555


Q ss_pred             CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc--CCCceEEEEEc------CCCCCEEEEEECCCcE
Q psy4578         726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWS------PHNETILASSGTDRRL  797 (860)
Q Consensus       726 ~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~--h~~~V~~l~fs------p~g~~lL~tgs~Dg~I  797 (860)
                      .+ ..+.+++|.-+..+.+..|..+|.|.|||++..+.++..+.+  ...+|..++.-      +.|. +++....  .+
T Consensus       234 a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l  309 (463)
T KOG1645|consen  234 AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VL  309 (463)
T ss_pred             cc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hh
Confidence            55 889999999998888999999999999999988765544443  22344444332      2343 3433333  35


Q ss_pred             EEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         798 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       798 ~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      .+|++......          ..++... +-.+...+++.++-.+.++++.-
T Consensus       310 ~f~ei~~s~~~----------~p~vlel-e~pG~cismqy~~~snh~l~tyR  350 (463)
T KOG1645|consen  310 QFYEIVFSAEC----------LPCVLEL-EPPGICISMQYHGVSNHLLLTYR  350 (463)
T ss_pred             hhhhhhccccC----------CCccccc-CCCcceeeeeecCccceEEEEec
Confidence            56665542211          1111111 12345556666665555555543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.65  E-value=0.0015  Score=71.58  Aligned_cols=146  Identities=13%  Similarity=0.169  Sum_probs=104.0

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCC-cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQ-KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG-~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      .++.+.|.-..+.. ++.-++.|..|| .+-|+|..+++    +..+...-+.|.++..+++|.+ ++++.....     
T Consensus       356 v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e----~kr~e~~lg~I~av~vs~dGK~-~vvaNdr~e-----  424 (668)
T COG4946         356 VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE----VKRIEKDLGNIEAVKVSPDGKK-VVVANDRFE-----  424 (668)
T ss_pred             cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce----EEEeeCCccceEEEEEcCCCcE-EEEEcCceE-----
Confidence            34556677777775 555788899999 99999998753    3445556688999999999996 666655555     


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC----cEEEEeCCCCceeeEEeccCC
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK----TVALWDLRNLKLKLHSFESHK  772 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg----~I~IWDl~~~~~~~~~~~~h~  772 (860)
                                +.+.|+.++..   ...-+...+-|+..+|||++++ +|-+--+|    .|+++|+.+++.  .......
T Consensus       425 ----------l~vididngnv---~~idkS~~~lItdf~~~~nsr~-iAYafP~gy~tq~Iklydm~~~Ki--y~vTT~t  488 (668)
T COG4946         425 ----------LWVIDIDNGNV---RLIDKSEYGLITDFDWHPNSRW-IAYAFPEGYYTQSIKLYDMDGGKI--YDVTTPT  488 (668)
T ss_pred             ----------EEEEEecCCCe---eEecccccceeEEEEEcCCcee-EEEecCcceeeeeEEEEecCCCeE--EEecCCc
Confidence                      77788888732   2222345678999999999996 77766554    699999998774  2333333


Q ss_pred             CceEEEEEcCCCCCEEEE
Q psy4578         773 DEIFQVQWSPHNETILAS  790 (860)
Q Consensus       773 ~~V~~l~fsp~g~~lL~t  790 (860)
                      +.=.+-+|.|+|+++...
T Consensus       489 a~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         489 AYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             ccccCcccCCCCcEEEEE
Confidence            444567888999874433

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.59  E-value=0.0025  Score=70.71  Aligned_cols=205  Identities=13%  Similarity=0.175  Sum_probs=116.7

Q ss_pred             eeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCC---------------cEEEEEcC
Q psy4578         588 FFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQ---------------KLMIWDTR  652 (860)
Q Consensus       588 ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG---------------~I~IWd~~  652 (860)
                      ....|.+....+...+..+......++.+ +. +..|..+.|+| .+.+|.+=+..+               .+.+||+.
T Consensus        40 ~SP~G~~l~~~~~~~V~~~~g~~~~~l~~-~~-~~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~  116 (561)
T COG5354          40 ESPLGTYLFSEHAAGVECWGGPSKAKLVR-FR-HPDVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA  116 (561)
T ss_pred             ecCcchheehhhccceEEccccchhheee-ee-cCCceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEecc
Confidence            33446666666666666665555553332 22 34789999999 788888865433               49999998


Q ss_pred             CCCcccCeeeccCCCCC--ee-EEEEccCCCeEEEEEeCCCceeeecccc------------------------------
Q psy4578         653 SHNVSKPSHTVDAHTAE--VN-CLSFNPYSEYILATGSADKTQFEVEEEE------------------------------  699 (860)
Q Consensus       653 ~~~~~~~~~~~~~h~~~--V~-~l~~sp~g~~llasgs~Dg~i~~~~~~~------------------------------  699 (860)
                      ++.   .+..+.+...+  .+ -+.|+-++.+..-..+.  .+.++....                              
T Consensus       117 sg~---iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~--sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la  191 (561)
T COG5354         117 SGM---IVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS--SLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELA  191 (561)
T ss_pred             Cce---eEeeccccCCcccccceeeeeecchhhhhhccC--eEEEEecCCccccCchhhccccceeeEEecCCCCCceEE
Confidence            853   33333333322  23 45555554432212111  122222100                              


Q ss_pred             -----cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC----------CCcEEEEeCCCCcee
Q psy4578         700 -----EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA----------DKTVALWDLRNLKLK  764 (860)
Q Consensus       700 -----~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~----------Dg~I~IWDl~~~~~~  764 (860)
                           .....+.+++|.+....   .+.+..-....-..+.|++.|.++++-.-.          ...+.|++++....+
T Consensus       192 ~~tPEk~~kpa~~~i~sIp~~s---~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~  268 (561)
T COG5354         192 YWTPEKLNKPAMVRILSIPKNS---VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP  268 (561)
T ss_pred             EEccccCCCCcEEEEEEccCCC---eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc
Confidence                 01234456677665432   221111112233568999999986554321          256888888865543


Q ss_pred             eEEeccCCCceEEEEEcCCCCCEEEEE-ECCCcEEEEECCCC
Q psy4578         765 LHSFESHKDEIFQVQWSPHNETILASS-GTDRRLHVWDLSKI  805 (860)
Q Consensus       765 ~~~~~~h~~~V~~l~fsp~g~~lL~tg-s~Dg~I~iWdl~~~  805 (860)
                      +.  ....++|...+|.|.++.+.+.. -.+-.+.++|++.+
T Consensus       269 V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         269 VE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             ee--ccccccceeeeecccCCceeEEecccccceeecccccc
Confidence            32  25678999999999987643333 36778888888874

>KOG2114|consensus

Probab=97.59  E-value=0.003  Score=74.13  Aligned_cols=189  Identities=12%  Similarity=0.135  Sum_probs=116.1

Q ss_pred             EeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCC-c
Q psy4578         628 AWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQ-K  706 (860)
Q Consensus       628 ~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg-~  706 (860)
                      +|++ ++..++.|+.+|.|.+.+-.    .+....++.+...+...-|.-+++.++++-+.|+.          + .. -
T Consensus        30 c~~s-~~~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~----------~-np~l   93 (933)
T KOG2114|consen   30 CCSS-STGSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQ----------G-NPVL   93 (933)
T ss_pred             EEcC-CCceEEEeeccccEEEeccc----ceeeehheecchhhhhHhhcccCceEEEEEeecCC----------C-CceE
Confidence            3565 67889999999999888764    23445666666664444455556556777666664          1 22 4


Q ss_pred             EEEEeCCCCCCCC---Ce--eeecC-----CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC---CCceeeEEeccCCC
Q psy4578         707 LMIWDTRSHNVSK---PS--HTVDA-----HTAEVNCLSFNPYSEYILATGSADKTVALWDLR---NLKLKLHSFESHKD  773 (860)
Q Consensus       707 I~iwDl~~~~~~~---~~--~~~~~-----h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~---~~~~~~~~~~~h~~  773 (860)
                      ++|||++..+...   .+  ..+.+     ...++++++.|.+-. .+|+|-.||.|..+.-+   ..............
T Consensus        94 lkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~  172 (933)
T KOG2114|consen   94 LKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKE  172 (933)
T ss_pred             EEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCC
Confidence            8999987542212   22  11112     356788999998876 59999999999998532   11111222223467


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEE
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS  847 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llas  847 (860)
                      +|+.+++..++...+..+ .-..|.+|.+....             .....+..|+.++.+..+++....++++
T Consensus       173 pITgL~~~~d~~s~lFv~-Tt~~V~~y~l~gr~-------------p~~~~ld~~G~~lnCss~~~~t~qfIca  232 (933)
T KOG2114|consen  173 PITGLALRSDGKSVLFVA-TTEQVMLYSLSGRT-------------PSLKVLDNNGISLNCSSFSDGTYQFICA  232 (933)
T ss_pred             CceeeEEecCCceeEEEE-ecceeEEEEecCCC-------------cceeeeccCCccceeeecCCCCccEEEe
Confidence            999999999998643333 35678999887422             1122234455556666665544433433

>KOG2066|consensus

Probab=97.59  E-value=0.0012  Score=76.71  Aligned_cols=153  Identities=16%  Similarity=0.233  Sum_probs=105.7

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      ..+.++|++++   +.+|+-|+.+|.|++.+....    + .+...|...      ..+|.+ ++||+.||+        
T Consensus        38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Gey-~asCS~DGk--------   94 (846)
T KOG2066|consen   38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGEY-VASCSDDGK--------   94 (846)
T ss_pred             hhhHHHHHHhh---cceeeeccccceEEEEecCCc----c-ccccccccc------ccCCce-EEEecCCCc--------
Confidence            34567788886   688999999999999998742    2 233334433      567887 999999998        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC-----CCcEEEEeeCCCcEEEEeCCCCceeeE-EeccCCC
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY-----SEYILATGSADKTVALWDLRNLKLKLH-SFESHKD  773 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~-----g~~llasgs~Dg~I~IWDl~~~~~~~~-~~~~h~~  773 (860)
                             |.|..+.+.+   ...++. ...++.+++++|+     .+ .+++|+.-| +.++.-+-...... ......+
T Consensus        95 -------v~I~sl~~~~---~~~~~d-f~rpiksial~Pd~~~~~sk-~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG  161 (846)
T KOG2066|consen   95 -------VVIGSLFTDD---EITQYD-FKRPIKSIALHPDFSRQQSK-QFVSGGMAG-LVLSERNWLGNKDSVVLSEGEG  161 (846)
T ss_pred             -------EEEeeccCCc---cceeEe-cCCcceeEEeccchhhhhhh-heeecCcce-EEEehhhhhcCccceeeecCcc
Confidence                   7787777652   222222 3578899999997     34 488999988 87876553332111 2445678


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccc
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  812 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~  812 (860)
                      +|.++.|.  |. +++=++ |--|++||+.+......++
T Consensus       162 ~I~~i~W~--g~-lIAWan-d~Gv~vyd~~~~~~l~~i~  196 (846)
T KOG2066|consen  162 PIHSIKWR--GN-LIAWAN-DDGVKVYDTPTRQRLTNIP  196 (846)
T ss_pred             ceEEEEec--Cc-EEEEec-CCCcEEEeccccceeeccC
Confidence            99999997  55 355554 5569999999866655443

>KOG3617|consensus

Probab=97.54  E-value=0.0025  Score=74.17  Aligned_cols=116  Identities=11%  Similarity=0.060  Sum_probs=86.1

Q ss_pred             CcccccceeeeeeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc
Q psy4578         577 VTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV  656 (860)
Q Consensus       577 ~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~  656 (860)
                      .....|+..--++++.+|+-.......++.+..+   ..+-..-+-.++++||+| ..-+|++|-.-|.+.+|...+.+ 
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGE---Pqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e-   92 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGE---PQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTE-   92 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEecCCC---CCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCce-
Confidence            3444566666688888887766666666665443   222222334567899999 67788999999999999998743 


Q ss_pred             ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         657 SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       657 ~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                        .......|..++..+.||++|. .+.++..-|.+..|+.+..
T Consensus        93 --~htv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d~~  133 (1416)
T KOG3617|consen   93 --THTVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYDVI  133 (1416)
T ss_pred             --eeeeccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEeeec
Confidence              3344567999999999999999 5999999999999988854

>KOG1832|consensus

Probab=97.53  E-value=0.00011  Score=85.29  Aligned_cols=166  Identities=17%  Similarity=0.270  Sum_probs=115.9

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      ..+..+....+|++|+- +.+.++.|+-.|.|+++++.+|..   .....+|..+|+-+.=+.+|...+.+++...-   
T Consensus      1095 ~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~---e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P--- 1167 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSM---EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP--- 1167 (1516)
T ss_pred             hhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccc---cccccccccccccccccCCcceeeeeccccCc---
Confidence            33445667789999996 888999999999999999999643   45677899999999999999876665554441   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc---C
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES---H  771 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~---h  771 (860)
                                 -..+|+..+.  ....+++.    .-.++.|+....+ -+.|+......+||+.+.......+.+   .
T Consensus      1168 -----------lsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1168 -----------LSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred             -----------hHHHhccccc--cCcccccc----ccceeehhhhHHH-HHhcccccceEEEecccCcHHHHhcCcchhh
Confidence                       1568988763  34445544    3467888876553 455555567899999998762222322   2


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                      ...-++..|+|+...+|    .||  .+||++..+....+
T Consensus      1230 ~y~~n~a~FsP~D~LIl----ndG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLIL----NDG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred             hhhccccccCCCcceEe----eCc--eeeeeccHHHHhhh
Confidence            22337789999998544    455  47999886544443

>KOG1920|consensus

Probab=97.48  E-value=0.0078  Score=73.25  Aligned_cols=213  Identities=13%  Similarity=0.232  Sum_probs=117.8

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc-
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE-  700 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~-  700 (860)
                      +.|.++.|.- +++-++.+..+|.|.+-|.++..    ......-...|.+++|+||+.. ++..+..+++++-..+-. 
T Consensus        69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~----~eivg~vd~GI~aaswS~Dee~-l~liT~~~tll~mT~~f~~  142 (1265)
T KOG1920|consen   69 DEIVSVQFLA-DTNSICVITALGDIILVDPETLE----LEIVGNVDNGISAASWSPDEEL-LALITGRQTLLFMTKDFEP  142 (1265)
T ss_pred             cceEEEEEec-ccceEEEEecCCcEEEEcccccc----eeeeeeccCceEEEeecCCCcE-EEEEeCCcEEEEEeccccc
Confidence            5799999996 67777778889999998887642    2233334678999999999985 666656565433222111 


Q ss_pred             ------------------ccCCCcEEEEeCCCCC--CCCCeeeec--C---CCCCeEEEEEcCCCCcEEEEee----CC-
Q psy4578         701 ------------------ENYDQKLMIWDTRSHN--VSKPSHTVD--A---HTAEVNCLSFNPYSEYILATGS----AD-  750 (860)
Q Consensus       701 ------------------~~~dg~I~iwDl~~~~--~~~~~~~~~--~---h~~~I~sl~~sp~g~~llasgs----~D-  750 (860)
                                        .+++.+=.-+....+.  ........+  +   -...=+++.|--+|.+ +|+..    .+ 
T Consensus       143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~-fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY-FAVSFVESETGT  221 (1265)
T ss_pred             hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE-EEEEEEeccCCc
Confidence                              0000000000000000  000000000  0   1112256999999996 66621    23 


Q ss_pred             CcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE---CCCcEEEEECCCCCcccccccccCCCCccEEEecC
Q psy4578         751 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG---TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG  827 (860)
Q Consensus       751 g~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs---~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~  827 (860)
                      ..|++||-+ +.. -..-....+.-.+++|-|.|.. +++-.   +|+.|.++.-+..... .          .......
T Consensus       222 RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~-iA~iq~~~sd~~IvffErNGL~hg-~----------f~l~~p~  287 (1265)
T KOG1920|consen  222 RKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSL-IAAIQCKTSDSDIVFFERNGLRHG-E----------FVLPFPL  287 (1265)
T ss_pred             eeEEEeccc-chh-hcccCcccccccceeecCCCCe-EeeeeecCCCCcEEEEecCCcccc-c----------cccCCcc
Confidence            789999987 332 1111222344567999999974 55543   5678999985542221 1          1111112


Q ss_pred             ccCceEEEEEccCCCeEEEE---EeCCCeEee
Q psy4578         828 HTAKISDFSWNPNEPWVICS---VSEDNIMQK  856 (860)
Q Consensus       828 h~~~I~~i~~spdg~~Llas---gs~Dg~IrI  856 (860)
                      ....|..++|+.++. ++++   +.....|++
T Consensus       288 de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~l  318 (1265)
T KOG1920|consen  288 DEKEVEELAWNSNSD-ILAVVTSNLENSLVQL  318 (1265)
T ss_pred             cccchheeeecCCCC-ceeeeecccccceEEE
Confidence            233489999999999 4555   444443443

>KOG2066|consensus

Probab=97.44  E-value=0.0059  Score=71.33  Aligned_cols=142  Identities=13%  Similarity=0.248  Sum_probs=94.8

Q ss_pred             cCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC-----CCeEEEEEeCCCceeeecccccccCCCc
Q psy4578         632 LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY-----SEYILATGSADKTQFEVEEEEEENYDQK  706 (860)
Q Consensus       632 ~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-----g~~llasgs~Dg~i~~~~~~~~~~~dg~  706 (860)
                      ..|.+++||+.||+|.|..+-++..   ... .....++.+++++|+     .+ .+++||..|                
T Consensus        81 ~~Gey~asCS~DGkv~I~sl~~~~~---~~~-~df~rpiksial~Pd~~~~~sk-~fv~GG~ag----------------  139 (846)
T KOG2066|consen   81 LEGEYVASCSDDGKVVIGSLFTDDE---ITQ-YDFKRPIKSIALHPDFSRQQSK-QFVSGGMAG----------------  139 (846)
T ss_pred             cCCceEEEecCCCcEEEeeccCCcc---cee-EecCCcceeEEeccchhhhhhh-heeecCcce----------------
Confidence            3799999999999999999887532   222 234678999999997     33 378888777                


Q ss_pred             EEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc------eEEEEE
Q psy4578         707 LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE------IFQVQW  780 (860)
Q Consensus       707 I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~------V~~l~f  780 (860)
                      +.++.-+--+....+ ....-.+.|.++.|.  |. ++|-++.+| |++||+.+.+. +.........      -..+.|
T Consensus       140 lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~-lIAWand~G-v~vyd~~~~~~-l~~i~~p~~~~R~e~fpphl~W  213 (846)
T KOG2066|consen  140 LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GN-LIAWANDDG-VKVYDTPTRQR-LTNIPPPSQSVRPELFPPHLHW  213 (846)
T ss_pred             EEEehhhhhcCccce-eeecCccceEEEEec--Cc-EEEEecCCC-cEEEeccccce-eeccCCCCCCCCcccCCCceEe
Confidence            333322111110111 344557899999997  55 577776655 89999988776 4444332222      345788


Q ss_pred             cCCCCCEEEEEECCCcEEEEECC
Q psy4578         781 SPHNETILASSGTDRRLHVWDLS  803 (860)
Q Consensus       781 sp~g~~lL~tgs~Dg~I~iWdl~  803 (860)
                      .++.+  | .-|...+|+|..++
T Consensus       214 ~~~~~--L-VIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  214 QDEDR--L-VIGWGDSVKICSIK  233 (846)
T ss_pred             cCCCe--E-EEecCCeEEEEEEe
Confidence            88775  3 34567789999988

>KOG2314|consensus

Probab=97.39  E-value=0.0049  Score=68.96  Aligned_cols=151  Identities=19%  Similarity=0.369  Sum_probs=96.5

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN  702 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~  702 (860)
                      .-+-+.||| .|.+|+|--..| |.+|-=.+   ...++.+ .|+ .|.-+.|||..+| |+|-+..-....|.    ..
T Consensus       212 Tetyv~wSP-~GTYL~t~Hk~G-I~lWGG~~---f~r~~RF-~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~----d~  279 (698)
T KOG2314|consen  212 TETYVRWSP-KGTYLVTFHKQG-IALWGGES---FDRIQRF-YHP-GVQFIDFSPNEKY-LVTYSPEPIIVEED----DN  279 (698)
T ss_pred             eeeeEEecC-CceEEEEEeccc-eeeecCcc---HHHHHhc-cCC-CceeeecCCccce-EEEecCCccccCcc----cC
Confidence            456789999 899999887765 88996554   3334443 343 5888999999998 66665544322221    23


Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  782 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp  782 (860)
                      ...++.|||+.+|...+....+.+....-.-..||.|++| +|--. -.+|.||+...... +..-.-.-..|....|+|
T Consensus       280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy-~Arm~-~~sisIyEtpsf~l-ld~Kslki~gIr~FswsP  356 (698)
T KOG2314|consen  280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY-FARMT-GNSISIYETPSFML-LDKKSLKISGIRDFSWSP  356 (698)
T ss_pred             CCceEEEEEccccchhcceeccCCCccccceEEeccCCce-eEEec-cceEEEEecCceee-ecccccCCccccCcccCC
Confidence            3456999999998543333333322222335789999996 54333 36899998876443 222222346788899999


Q ss_pred             CCCCEEE
Q psy4578         783 HNETILA  789 (860)
Q Consensus       783 ~g~~lL~  789 (860)
                      .+. +||
T Consensus       357 ~~~-llA  362 (698)
T KOG2314|consen  357 TSN-LLA  362 (698)
T ss_pred             Ccc-eEE
Confidence            875 344

>KOG0882|consensus

Probab=97.33  E-value=0.0037  Score=68.36  Aligned_cols=179  Identities=14%  Similarity=0.207  Sum_probs=120.5

Q ss_pred             hhhhhhcccceeeeEeeccCCcEEEEEeC-CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC-CCeEEEEEe-CCC
Q psy4578         614 ICQLLDKLRLLIDVAWHLLHESLFGSVAD-DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY-SEYILATGS-ADK  690 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~~~~~lasgs~-DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~-g~~llasgs-~Dg  690 (860)
                      +..+..|.+.|.+++.+- ++.+++|++. |..++++|+++-....- ..+..-++.+.++ .++. ...+++++. .+|
T Consensus        46 VKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~Dminm-iKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg  122 (558)
T KOG0882|consen   46 VKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENFDMINM-IKLVDLPGFAEWV-TSKGDKISLIAVSLFKSG  122 (558)
T ss_pred             hhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeeccchhhh-cccccCCCceEEe-cCCCCeeeeEEeecccCC
Confidence            344555667788888885 7888999777 99999999987432111 1122223333222 2221 122344443 344


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC-Ccee-----
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN-LKLK-----  764 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~-~~~~-----  764 (860)
                      .               +.++|-....+ +....-.-|..+|.++.+++.+.. +++....|.|.-|.... .+.+     
T Consensus       123 ~---------------i~VvD~~~d~~-q~~~fkklH~sPV~~i~y~qa~Ds-~vSiD~~gmVEyWs~e~~~qfPr~~l~  185 (558)
T KOG0882|consen  123 K---------------IFVVDGFGDFC-QDGYFKKLHFSPVKKIRYNQAGDS-AVSIDISGMVEYWSAEGPFQFPRTNLN  185 (558)
T ss_pred             C---------------cEEECCcCCcC-ccceecccccCceEEEEeeccccc-eeeccccceeEeecCCCcccCcccccc
Confidence            4               99999876533 344445569999999999999985 88888889999998873 1110     


Q ss_pred             --------eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccc
Q psy4578         765 --------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED  813 (860)
Q Consensus       765 --------~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~  813 (860)
                              +..+....+...++.|+|+|.. +.+-+.|..|+++++++++..+.++.
T Consensus       186 ~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  186 FELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             ccccccchhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccchhhhhhhc
Confidence                    1122234567789999999987 78888999999999999887766543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.33  E-value=0.068  Score=55.94  Aligned_cols=209  Identities=16%  Similarity=0.205  Sum_probs=115.9

Q ss_pred             EeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeee---ccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCC
Q psy4578         628 AWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHT---VDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYD  704 (860)
Q Consensus       628 ~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~---~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~d  704 (860)
                      +.+. +|++||.. .|..|-|=..+++-. ..+..   .+.....=+.++|+||+. ++|.+...|+             
T Consensus         4 ~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~-si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~-------------   66 (282)
T PF15492_consen    4 ALSS-DGKLLAIL-QDQCIEIRSAKDDFS-SIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGT-------------   66 (282)
T ss_pred             eecC-CCcEEEEE-eccEEEEEeccCCch-heeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCe-------------
Confidence            3443 66666654 566777766655321 11111   122223347799999998 6888888888             


Q ss_pred             CcEEEEeCCCCCCC--CCeeee-cCCCCCeEEEEEcCCC-----CcEEEEeeCCCcEEEEeCCCCc----eeeE--Eecc
Q psy4578         705 QKLMIWDTRSHNVS--KPSHTV-DAHTAEVNCLSFNPYS-----EYILATGSADKTVALWDLRNLK----LKLH--SFES  770 (860)
Q Consensus       705 g~I~iwDl~~~~~~--~~~~~~-~~h~~~I~sl~~sp~g-----~~llasgs~Dg~I~IWDl~~~~----~~~~--~~~~  770 (860)
                        |++||+......  .+.... ..-...|.++.|-+..     .+.|.+-..+|.++-|-+..+.    ...+  .+..
T Consensus        67 --i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~  144 (282)
T PF15492_consen   67 --IRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS  144 (282)
T ss_pred             --EEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence              888887643210  000001 1123456677665432     2345566778888877653221    1122  2332


Q ss_pred             -CCCceEEEEEcCCCCCEEEEEECCC----------cEEEEECCCCCccccc-ccccC---------CCCccE-----EE
Q psy4578         771 -HKDEIFQVQWSPHNETILASSGTDR----------RLHVWDLSKIGEEQST-EDAED---------GPPELL-----FI  824 (860)
Q Consensus       771 -h~~~V~~l~fsp~g~~lL~tgs~Dg----------~I~iWdl~~~~~~~~~-~~~~~---------~~~~~i-----~~  824 (860)
                       +...|.++.|+|..+.+++.|+...          -+..|.+-+...-... ...++         +..+..     ..
T Consensus       145 ~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~  224 (282)
T PF15492_consen  145 HYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR  224 (282)
T ss_pred             cCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence             4678999999999886554444322          3566766543321110 00000         000111     11


Q ss_pred             ecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         825 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       825 ~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .......|..|..||||. ++|+...+|.|-+
T Consensus       225 ~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsL  255 (282)
T PF15492_consen  225 QGQEQDGIFKMSLSPDGS-LLACIHFSGSLSL  255 (282)
T ss_pred             cccCCCceEEEEECCCCC-EEEEEEcCCeEEE
Confidence            123467899999999999 6888888888764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.27  E-value=0.037  Score=59.41  Aligned_cols=207  Identities=12%  Similarity=0.090  Sum_probs=123.2

Q ss_pred             eeeeEeeccCCcEEEEEeCCCc-EEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578         624 LIDVAWHLLHESLFGSVADDQK-LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN  702 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~-I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~  702 (860)
                      .-.++.+|.....++.+-.-|+ ..+||..++.....+..-.+ ...--.-.|++||+++++|-.+-           ..
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g-RHFyGHg~fs~dG~~LytTEnd~-----------~~   74 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG-RHFYGHGVFSPDGRLLYTTENDY-----------ET   74 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC-CEEecCEEEcCCCCEEEEecccc-----------CC
Confidence            3467888877788888888774 67899988654322211111 11112357999999755554321           23


Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEE-ee----------------CCCcEEEEeCCCCceee
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT-GS----------------ADKTVALWDLRNLKLKL  765 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llas-gs----------------~Dg~I~IWDl~~~~~~~  765 (860)
                      ..|.|-|||....  ...+..+..|.-.-..+.+.|+|..+++. |+                .+.++..-|..++.. +
T Consensus        75 g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l-l  151 (305)
T PF07433_consen   75 GRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL-L  151 (305)
T ss_pred             CcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce-e
Confidence            5677999999832  36667777777777889999999753332 21                123444556666665 3


Q ss_pred             EE--e--ccCCCceEEEEEcCCCCCEEEEEE-CCC-------cEEEEECCCCCcccccccccCCCCccEEEecCccCceE
Q psy4578         766 HS--F--ESHKDEIFQVQWSPHNETILASSG-TDR-------RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS  833 (860)
Q Consensus       766 ~~--~--~~h~~~V~~l~fsp~g~~lL~tgs-~Dg-------~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~  833 (860)
                      .+  +  ..|...+..+++.++|.  ++.|. ..|       -+-+++...  .......    +..   ....-.+.|-
T Consensus       152 ~q~~Lp~~~~~lSiRHLa~~~~G~--V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~----p~~---~~~~l~~Y~g  220 (305)
T PF07433_consen  152 EQVELPPDLHQLSIRHLAVDGDGT--VAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPA----PEE---QWRRLNGYIG  220 (305)
T ss_pred             eeeecCccccccceeeEEecCCCc--EEEEEecCCCCCccCCeEEEEcCCC--cceeccC----ChH---HHHhhCCceE
Confidence            33  3  33778899999999996  33443 222       122232221  1110000    000   0112345688


Q ss_pred             EEEEccCCCeEEEEEeCCCeEee
Q psy4578         834 DFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       834 ~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|+++.+|..+++|+-..+.+.+
T Consensus       221 SIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  221 SIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             EEEEeCCCCEEEEECCCCCEEEE
Confidence            99999999988888877777654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.21  E-value=0.0052  Score=70.03  Aligned_cols=175  Identities=15%  Similarity=0.097  Sum_probs=105.3

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEE--EcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIW--DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IW--d~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      +++.+...++........+.-..-+|+|++..++++...||...||  |+.++.    ...+....+.-+.=.|+|+|++
T Consensus       220 i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~----~~~Lt~~~gi~~~Ps~spdG~~  295 (425)
T COG0823         220 IYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN----LPRLTNGFGINTSPSWSPDGSK  295 (425)
T ss_pred             EEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc----ceecccCCccccCccCCCCCCE
Confidence            3444444444444444555666778999777778888888876666  554433    2223333333346789999999


Q ss_pred             EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc--EEEEeCC
Q psy4578         682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT--VALWDLR  759 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~--I~IWDl~  759 (860)
                      ++.+.+..|.             .+|.++|......    ..+....+.-..-.|+|+|++++..+..+|.  |.+.|+.
T Consensus       296 ivf~Sdr~G~-------------p~I~~~~~~g~~~----~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         296 IVFTSDRGGR-------------PQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             EEEEeCCCCC-------------cceEEECCCCCce----eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence            8888877775             3466777766432    2222233333378899999986666644555  6667776


Q ss_pred             CCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       760 ~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      ++.. ...+. +......-.|.++|+.++.+++.-+.=.++.
T Consensus       359 ~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~  398 (425)
T COG0823         359 SGGK-IRILT-STYLNESPSWAPNGRMIMFSSGQGGGSVLSL  398 (425)
T ss_pred             CCCc-EEEcc-ccccCCCCCcCCCCceEEEeccCCCCceEEE
Confidence            6553 23332 3344455678888887665555443333333

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.14  E-value=0.061  Score=60.23  Aligned_cols=235  Identities=14%  Similarity=0.161  Sum_probs=132.2

Q ss_pred             eeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC-------C------
Q psy4578         600 IEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-------H------  666 (860)
Q Consensus       600 l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~-------h------  666 (860)
                      ...-.++.+........+......+....|+| +++.++... ++.|.+++..++...  ..+..+       -      
T Consensus        21 ~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~--~lT~dg~~~i~nG~~dwvye   96 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQET--QLTTDGEPGIYNGVPDWVYE   96 (353)
T ss_dssp             EEEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEE--ESES--TTTEEESB--HHHH
T ss_pred             cceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeE--EeccccceeEEcCccceecc
Confidence            33456667777777666666677899999999 577776665 578999987664211  111112       0      


Q ss_pred             ---CCCeeEEEEccCCCeEEEEEeCCCceeeeccccc------------------ccC--CCcEEEEeCCCCCCCCCeee
Q psy4578         667 ---TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE------------------ENY--DQKLMIWDTRSHNVSKPSHT  723 (860)
Q Consensus       667 ---~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~------------------~~~--dg~I~iwDl~~~~~~~~~~~  723 (860)
                         -+.-..+-|||||++++..-.++..+..+.....                  |..  .-.+.++|+.+++.. .+..
T Consensus        97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~  175 (353)
T PF00930_consen   97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDP  175 (353)
T ss_dssp             HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE--
T ss_pred             ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-Eeee
Confidence               1123568899999997766666666544432221                  111  224667888776431 1111


Q ss_pred             e---cCCCCCeEEEEEcCCCC-cEEEEeeCCC---cEEEEeCCCCceeeEEeccCCCce---EEEEEc-CCCCCEEEEEE
Q psy4578         724 V---DAHTAEVNCLSFNPYSE-YILATGSADK---TVALWDLRNLKLKLHSFESHKDEI---FQVQWS-PHNETILASSG  792 (860)
Q Consensus       724 ~---~~h~~~I~sl~~sp~g~-~llasgs~Dg---~I~IWDl~~~~~~~~~~~~h~~~V---~~l~fs-p~g~~lL~tgs  792 (860)
                      .   ..-...+..+.|.+++. .++...+++.   .+.++|..++...........+.|   ....|. +++..++....
T Consensus       176 ~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~  255 (353)
T PF00930_consen  176 PNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE  255 (353)
T ss_dssp             -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE
T ss_pred             ccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE
Confidence            1   23456788999999998 3334444443   366778877665333333333333   245554 77777777777


Q ss_pred             CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE-EEEccCCCeEEEEEeCCC
Q psy4578         793 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD-FSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       793 ~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~-i~~spdg~~Llasgs~Dg  852 (860)
                      .||.-+++-+......             ...+....-.|.. +.|+++++.++.++..++
T Consensus       256 ~~G~~hly~~~~~~~~-------------~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~  303 (353)
T PF00930_consen  256 RDGYRHLYLYDLDGGK-------------PRQLTSGDWEVTSILGWDEDNNRIYFTANGDN  303 (353)
T ss_dssp             TTSSEEEEEEETTSSE-------------EEESS-SSS-EEEEEEEECTSSEEEEEESSGG
T ss_pred             cCCCcEEEEEcccccc-------------eeccccCceeecccceEcCCCCEEEEEecCCC
Confidence            8887666655542211             1222222344543 677888887777776543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.12  E-value=0.024  Score=62.68  Aligned_cols=203  Identities=11%  Similarity=0.037  Sum_probs=113.0

Q ss_pred             EEEEeeccchhhhhhhhhc--------ccceeeeEeeccCCcEEEEEe-C-CCcEEEEEcCCCCcccCeeeccCCCCCe-
Q psy4578         602 EVMYLENKTRAQICQLLDK--------LRLLIDVAWHLLHESLFGSVA-D-DQKLMIWDTRSHNVSKPSHTVDAHTAEV-  670 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~~~--------~~~V~~v~~sp~~~~~lasgs-~-DG~I~IWd~~~~~~~~~~~~~~~h~~~V-  670 (860)
                      ..+.+++....+....+..        ......++++| +++++++.. . +..|.+.|+.+++.   +..+.. .++. 
T Consensus        77 d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kv---v~ei~v-p~~~~  151 (352)
T TIGR02658        77 DYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAF---VRMMDV-PDCYH  151 (352)
T ss_pred             CEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcE---EEEEeC-CCCcE
Confidence            4455555555444433322        12344788998 565555443 4 78999999998543   222211 1111 


Q ss_pred             -------eEEEEccCCCeEEEEEeCCCcee-----eeccc-------------cc----ccCCCcEEEEeCCCCCCC--C
Q psy4578         671 -------NCLSFNPYSEYILATGSADKTQF-----EVEEE-------------EE----ENYDQKLMIWDTRSHNVS--K  719 (860)
Q Consensus       671 -------~~l~~sp~g~~llasgs~Dg~i~-----~~~~~-------------~~----~~~dg~I~iwDl~~~~~~--~  719 (860)
                             .....+.||..+.++-..+|...     +.+.+             .+    -+..|.|.+.|+......  .
T Consensus       152 vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~  231 (352)
T TIGR02658       152 IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLP  231 (352)
T ss_pred             EEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecc
Confidence                   12233455554332322333211     11110             00    123477888886443210  1


Q ss_pred             Ceeeec-------CCCCCeEEEEEcCCCCcEEEEee---------CCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCC
Q psy4578         720 PSHTVD-------AHTAEVNCLSFNPYSEYILATGS---------ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH  783 (860)
Q Consensus       720 ~~~~~~-------~h~~~I~sl~~sp~g~~llasgs---------~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~  783 (860)
                      ....+.       ...+.+.-++++|+++.+++...         ..+.|.++|..+.+. +..+. -...+..++++||
T Consensus       232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv-i~~i~-vG~~~~~iavS~D  309 (352)
T TIGR02658       232 AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR-LRKIE-LGHEIDSINVSQD  309 (352)
T ss_pred             eeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE-EEEEe-CCCceeeEEECCC
Confidence            111111       12334455999999997665331         125799999999887 55554 2457899999999


Q ss_pred             CC-CEEEEEECCCcEEEEECCCCCccccc
Q psy4578         784 NE-TILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       784 g~-~lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                      |+ .++++...++.|.+.|..+.+....+
T Consensus       310 gkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       310 AKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            99 65556667899999999986655443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.08  E-value=0.0083  Score=72.32  Aligned_cols=145  Identities=19%  Similarity=0.187  Sum_probs=94.0

Q ss_pred             CCcEEEEE-eCCCcEEEEEcCCCCcccCeeeccCCCCC-eeEEEEcc-----CCCeEEEEEeCCCceeeecccccccCCC
Q psy4578         633 HESLFGSV-ADDQKLMIWDTRSHNVSKPSHTVDAHTAE-VNCLSFNP-----YSEYILATGSADKTQFEVEEEEEENYDQ  705 (860)
Q Consensus       633 ~~~~lasg-s~DG~I~IWd~~~~~~~~~~~~~~~h~~~-V~~l~~sp-----~g~~llasgs~Dg~i~~~~~~~~~~~dg  705 (860)
                      +.++++.. .....+.-.|++.|   +.+.....|... |.+++=..     +... -..|-.+..              
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~G---KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~-tflGls~n~--------------  553 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERG---KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQ-TFLGLSDNS--------------  553 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCC---cEEEEeecCCCcceeEecccccccccCCCc-eEEEECCCc--------------
Confidence            44554443 34577888888885   556666665543 54443221     1122 234444444              


Q ss_pred             cEEEEeCCCCCCCCCe----eeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEc
Q psy4578         706 KLMIWDTRSHNVSKPS----HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS  781 (860)
Q Consensus       706 ~I~iwDl~~~~~~~~~----~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fs  781 (860)
                       +..||.+-.. .+.+    ..+ ......+|++-+.+|.  +|+|+.+|.||+||--+ ...-..+.+-..+|.+|..+
T Consensus       554 -lfriDpR~~~-~k~v~~~~k~Y-~~~~~Fs~~aTt~~G~--iavgs~~G~IRLyd~~g-~~AKT~lp~lG~pI~~iDvt  627 (794)
T PF08553_consen  554 -LFRIDPRLSG-NKLVDSQSKQY-SSKNNFSCFATTEDGY--IAVGSNKGDIRLYDRLG-KRAKTALPGLGDPIIGIDVT  627 (794)
T ss_pred             -eEEeccCCCC-Cceeecccccc-ccCCCceEEEecCCce--EEEEeCCCcEEeecccc-hhhhhcCCCCCCCeeEEEec
Confidence             7788887642 1111    111 2345678888888885  89999999999999544 33345567778999999999


Q ss_pred             CCCCCEEEEEECCCcEEEEECC
Q psy4578         782 PHNETILASSGTDRRLHVWDLS  803 (860)
Q Consensus       782 p~g~~lL~tgs~Dg~I~iWdl~  803 (860)
                      .||+++|+||  +..+.+++..
T Consensus       628 ~DGkwilaTc--~tyLlLi~t~  647 (794)
T PF08553_consen  628 ADGKWILATC--KTYLLLIDTL  647 (794)
T ss_pred             CCCcEEEEee--cceEEEEEEe
Confidence            9999977666  5678888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2114|consensus

Probab=96.95  E-value=0.053  Score=64.10  Aligned_cols=172  Identities=12%  Similarity=0.168  Sum_probs=106.3

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCc-----EEEEEcCCCCc---ccCe---eec----cCCCCCeeEEEEccCCCe
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQK-----LMIWDTRSHNV---SKPS---HTV----DAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~-----I~IWd~~~~~~---~~~~---~~~----~~h~~~V~~l~~sp~g~~  681 (860)
                      +..+..++...-|.-++.++|++.+.|+.     ++||+++.-..   ..++   ..+    ...+.++++++.+.+-. 
T Consensus        60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-  138 (933)
T KOG2114|consen   60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-  138 (933)
T ss_pred             heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-
Confidence            33334444555565545578888776654     89999975311   1222   111    12356789999998866 


Q ss_pred             EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCC
Q psy4578         682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL  761 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~  761 (860)
                      .+++|-.+|.|..+.++-.             .... ....-......+|+++++..++..++.++. -..|.+|.+.+.
T Consensus       139 ~Iv~Gf~nG~V~~~~GDi~-------------RDrg-sr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr  203 (933)
T KOG2114|consen  139 TIVCGFTNGLVICYKGDIL-------------RDRG-SRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGR  203 (933)
T ss_pred             EEEEEecCcEEEEEcCcch-------------hccc-cceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCC
Confidence            5899999998333322211             1100 111122234678999999988886333333 357999999865


Q ss_pred             ceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         762 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       762 ~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      .........|+..++|..+++.... +++|+ +..+.+||....+
T Consensus       204 ~p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  204 TPSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             CcceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCcc
Confidence            5334457788889999999987664 33443 5689999987633

>KOG1832|consensus

Probab=96.89  E-value=0.0012  Score=76.98  Aligned_cols=129  Identities=21%  Similarity=0.261  Sum_probs=97.7

Q ss_pred             cCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEc
Q psy4578         658 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN  737 (860)
Q Consensus       658 ~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~s  737 (860)
                      +....+..|....+|++|+-+.++ +++|+..|.               |++|++.++   .......+|.+.|+-+.-+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~h-L~vG~~~Ge---------------ik~~nv~sG---~~e~s~ncH~SavT~vePs 1152 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNH-LAVGSHAGE---------------IKIFNVSSG---SMEESVNCHQSAVTLVEPS 1152 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCce-EEeeeccce---------------EEEEEccCc---ccccccccccccccccccc
Confidence            445667788899999999987775 899998888               999999998   5556778999999999999


Q ss_pred             CCCCcEEEEeeCCC-cEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc
Q psy4578         738 PYSEYILATGSADK-TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  810 (860)
Q Consensus       738 p~g~~llasgs~Dg-~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~  810 (860)
                      .+|..+|.+++... -..+|+..+...+.+++.+    -.++.|+....+ -+.|+......+||+.+....+.
T Consensus      1153 ~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1153 VDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred             CCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHH-HHhcccccceEEEecccCcHHHH
Confidence            99997665555544 5789998765444555553    456788876543 34455556789999999776554

>KOG1920|consensus

Probab=96.74  E-value=0.025  Score=69.08  Aligned_cols=162  Identities=18%  Similarity=0.303  Sum_probs=97.9

Q ss_pred             cceeeeEeeccCCcEEEEE-----eCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         622 RLLIDVAWHLLHESLFGSV-----ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasg-----s~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      +.=++|+|-- ++.+||+.     .....|+|||-+ +..   -..-....+.-.+++|-|.|.. +++-..++.     
T Consensus       196 ~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~L---ns~se~~~~l~~~LsWkPsgs~-iA~iq~~~s-----  264 (1265)
T KOG1920|consen  196 DHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GAL---NSTSEPVEGLQHSLSWKPSGSL-IAAIQCKTS-----  264 (1265)
T ss_pred             cCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chh---hcccCcccccccceeecCCCCe-EeeeeecCC-----
Confidence            3445799985 78888873     223799999987 211   1111122344578999998884 665544443     


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEE---eeCCCcEEEEeCCCCceeeEEeccCCC
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT---GSADKTVALWDLRNLKLKLHSFESHKD  773 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llas---gs~Dg~I~IWDl~~~~~~~~~~~~h~~  773 (860)
                             ++.|.+|.-+.-........+......|..++|+.++. +||+   ......|++|-+.+....++..-.-..
T Consensus       265 -------d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~  336 (1265)
T KOG1920|consen  265 -------DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ  336 (1265)
T ss_pred             -------CCcEEEEecCCccccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeEEEEEEEEeccc
Confidence                   44588887654332222223333444589999999998 5766   444455999999887764443222121


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECC
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLS  803 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~  803 (860)
                      ... +.|+|...+-+..-+.+|...++|+.
T Consensus       337 ~~~-~~W~p~~~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  337 KAL-LMWDPVTEKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             ccc-ccccCCCceeEEEEecCCcEEEEEEE
Confidence            111 77888665545455466666665543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.71  E-value=0.26  Score=51.95  Aligned_cols=204  Identities=14%  Similarity=0.191  Sum_probs=103.7

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      ...+++++|+|+++.++++....+.|..++.. ++..+. ..+.+ .+..-.|++..++.+ +++.-.++.         
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~-i~l~g-~~D~EgI~y~g~~~~-vl~~Er~~~---------   87 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR-IPLDG-FGDYEGITYLGNGRY-VLSEERDQR---------   87 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE-EE-SS--SSEEEEEE-STTEE-EEEETTTTE---------
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE-EeCCC-CCCceeEEEECCCEE-EEEEcCCCc---------
Confidence            34699999999778888999899999888864 332221 12333 356788999877764 444444666         


Q ss_pred             ccCCCcEEEEeCCCCCCCCCe---eee-----cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC--C--ceeeEEe
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPS---HTV-----DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN--L--KLKLHSF  768 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~---~~~-----~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~--~--~~~~~~~  768 (860)
                            +.++++.........   ..+     ..+...+-.++|+|.+..++ .+-...-..+|.++.  .  .......
T Consensus        88 ------L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~  160 (248)
T PF06977_consen   88 ------LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDD  160 (248)
T ss_dssp             ------EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred             ------EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCccceeeccc
Confidence                  666666332110111   111     13456789999999888645 455566666776654  1  1111111


Q ss_pred             ------ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578         769 ------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  842 (860)
Q Consensus       769 ------~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~  842 (860)
                            ......+.+++++|....+++....+..|..+|.. +.......-.. +..    .+...-..--+|+|+++|.
T Consensus       161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~-g~~----gl~~~~~QpEGIa~d~~G~  234 (248)
T PF06977_consen  161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDR-GFH----GLSKDIPQPEGIAFDPDGN  234 (248)
T ss_dssp             HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-ST-TGG----G-SS---SEEEEEE-TT--
T ss_pred             cccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCC-ccc----CcccccCCccEEEECCCCC
Confidence                  12345678999999888888888888899999843 22211110000 000    0000113467899999998


Q ss_pred             eEEEEEeCCC
Q psy4578         843 WVICSVSEDN  852 (860)
Q Consensus       843 ~Llasgs~Dg  852 (860)
                       |.++ |+-+
T Consensus       235 -LYIv-sEpN  242 (248)
T PF06977_consen  235 -LYIV-SEPN  242 (248)
T ss_dssp             -EEEE-ETTT
T ss_pred             -EEEE-cCCc
Confidence             4433 3444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.67  E-value=0.027  Score=65.76  Aligned_cols=156  Identities=14%  Similarity=0.151  Sum_probs=94.3

Q ss_pred             CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEe--CCCc-e-----------eeecccc--cc----
Q psy4578         642 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS--ADKT-Q-----------FEVEEEE--EE----  701 (860)
Q Consensus       642 ~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs--~Dg~-i-----------~~~~~~~--~~----  701 (860)
                      ..+.+.+.|.++.   +...++.. .+....+.++++|.++++++.  ..|. +           ..++...  ..    
T Consensus       213 y~~~vSvID~etm---eV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdG  288 (635)
T PRK02888        213 YRSLFTAVDAETM---EVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAG  288 (635)
T ss_pred             eeEEEEEEECccc---eEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCC
Confidence            3455666666652   22222222 234466788999998666652  1111 1           1111110  00    


Q ss_pred             ----cCCCcEEEEeCCCCC--CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-----------e
Q psy4578         702 ----NYDQKLMIWDTRSHN--VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-----------K  764 (860)
Q Consensus       702 ----~~dg~I~iwDl~~~~--~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-----------~  764 (860)
                          ..++.|.+.|..+..  ....+..+ .-......++++|||+++++++..+++|.|.|+.....           .
T Consensus       289 K~~~V~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v  367 (635)
T PRK02888        289 KFKTIGGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV  367 (635)
T ss_pred             CEEEECCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence                123568888887610  01222222 23456678999999999899999999999999987552           1


Q ss_pred             eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         765 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       765 ~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      +....- ...-...+|.++|. ...|.--|..|..||+..
T Consensus       368 vaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        368 VAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence            222222 23345678999986 577888999999999886

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.63  E-value=0.027  Score=68.03  Aligned_cols=123  Identities=15%  Similarity=0.116  Sum_probs=81.3

Q ss_pred             EEEEeCCCCCCCCCeeeecCCCCC-eEEEEEcC-----CCCcEEEEeeCCCcEEEEeCCCCceeeEEec----cCCCceE
Q psy4578         707 LMIWDTRSHNVSKPSHTVDAHTAE-VNCLSFNP-----YSEYILATGSADKTVALWDLRNLKLKLHSFE----SHKDEIF  776 (860)
Q Consensus       707 I~iwDl~~~~~~~~~~~~~~h~~~-I~sl~~sp-----~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~----~h~~~V~  776 (860)
                      ++-.|+..+   +.+.....|... |..++-..     +... -+.|-.++.+..||.|-....+..-.    ......+
T Consensus       506 ly~mDLe~G---KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~-tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  506 LYKMDLERG---KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQ-TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             eEEEecCCC---cEEEEeecCCCcceeEecccccccccCCCc-eEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            777777776   455555554432 44443221     1222 45778889999999996542222111    2445678


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      |++-+.+|.  +|.|+.+|.||+||--. .             +....+.+-..+|.+|+.+.||+|+|+||.
T Consensus       582 ~~aTt~~G~--iavgs~~G~IRLyd~~g-~-------------~AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  582 CFATTEDGY--IAVGSNKGDIRLYDRLG-K-------------RAKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             EEEecCCce--EEEEeCCCcEEeecccc-h-------------hhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence            888888885  89999999999999321 1             122334466789999999999999888774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2395|consensus

Probab=96.54  E-value=0.045  Score=61.45  Aligned_cols=123  Identities=15%  Similarity=0.150  Sum_probs=81.2

Q ss_pred             EEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCc------EEEEeeCCCcEEEEeCCCCce-eeEEeccC----CCce
Q psy4578         707 LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY------ILATGSADKTVALWDLRNLKL-KLHSFESH----KDEI  775 (860)
Q Consensus       707 I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~------llasgs~Dg~I~IWDl~~~~~-~~~~~~~h----~~~V  775 (860)
                      ++-.|++.+   +.+....-|.. |+-+.+.|++.+      --+.|-.|+.|.-||.|-... .+...++|    ....
T Consensus       358 l~klDIE~G---KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF  433 (644)
T KOG2395|consen  358 LYKLDIERG---KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF  433 (644)
T ss_pred             ceeeecccc---eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccc
Confidence            777788877   44445544443 666677775432      013466789999999984332 12222222    3456


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      .|.+-..+|.  ++.||.+|.|++||- .+.             +....+.+-..+|..+..+.+|.++++||-
T Consensus       434 sc~aTT~sG~--IvvgS~~GdIRLYdr-i~~-------------~AKTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  434 SCFATTESGY--IVVGSLKGDIRLYDR-IGR-------------RAKTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             ceeeecCCce--EEEeecCCcEEeehh-hhh-------------hhhhcccccCCceeeEEeeccCcEEEEecc
Confidence            6777777773  899999999999996 322             122345567889999999999999887764

>KOG3617|consensus

Probab=96.47  E-value=0.0057  Score=71.31  Aligned_cols=116  Identities=18%  Similarity=0.288  Sum_probs=85.7

Q ss_pred             eEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC
Q psy4578         671 NCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD  750 (860)
Q Consensus       671 ~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D  750 (860)
                      +-.+|+|..+ ++++++..-.           ..|.|.|| ..+++...- .+   ..-.+++++|||..- +|+.|-.-
T Consensus        19 ti~SWHPseP-lfAVA~fS~e-----------r~GSVtIf-adtGEPqr~-Vt---~P~hatSLCWHpe~~-vLa~gwe~   80 (1416)
T KOG3617|consen   19 TISSWHPSEP-LFAVASFSPE-----------RGGSVTIF-ADTGEPQRD-VT---YPVHATSLCWHPEEF-VLAQGWEM   80 (1416)
T ss_pred             cccccCCCCc-eeEEEEecCC-----------CCceEEEE-ecCCCCCcc-cc---cceehhhhccChHHH-HHhhcccc
Confidence            4468999888 5888875443           45568888 344431111 11   122356799999765 79999999


Q ss_pred             CcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         751 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       751 g~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      |.+.+|...+.+. ......|..++..+.||++|.. ++|+..-|.+.+|......
T Consensus        81 g~~~v~~~~~~e~-htv~~th~a~i~~l~wS~~G~~-l~t~d~~g~v~lwr~d~~g  134 (1416)
T KOG3617|consen   81 GVSDVQKTNTTET-HTVVETHPAPIQGLDWSHDGTV-LMTLDNPGSVHLWRYDVIG  134 (1416)
T ss_pred             ceeEEEecCCcee-eeeccCCCCCceeEEecCCCCe-EEEcCCCceeEEEEeeecc
Confidence            9999999888765 4455679999999999999985 8899999999999887433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.4  Score=54.29  Aligned_cols=195  Identities=13%  Similarity=0.173  Sum_probs=122.3

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeC--CCceeeecccccc
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA--DKTQFEVEEEEEE  701 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~--Dg~i~~~~~~~~~  701 (860)
                      -..+..++.+...+++...+..|.+.|..+...   .... .-......+++++++.++.++-..  +++          
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~---~~~~-~vG~~P~~~~~~~~~~~vYV~n~~~~~~~----------  141 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV---LGSI-PVGLGPVGLAVDPDGKYVYVANAGNGNNT----------  141 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccce---eeEe-eeccCCceEEECCCCCEEEEEecccCCce----------
Confidence            456778876666777777789999999766322   2221 112266789999999987776663  455          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE----eccCCCceEE
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS----FESHKDEIFQ  777 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~----~~~h~~~V~~  777 (860)
                           +.+.|..+.   ........-..+ ..++++|+|..++++-..++.|.+.|..+... ...    ...-...-..
T Consensus       142 -----vsvid~~t~---~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v-~~~~~~~~~~~~~~P~~  211 (381)
T COG3391         142 -----VSVIDAATN---KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV-VRGSVGSLVGVGTGPAG  211 (381)
T ss_pred             -----EEEEeCCCC---eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce-eccccccccccCCCCce
Confidence                 777777765   333332222223 88999999998777777899999999776654 210    0112233466


Q ss_pred             EEEcCCCCCEEEEEECC--CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         778 VQWSPHNETILASSGTD--RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       778 l~fsp~g~~lL~tgs~D--g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      +.++|+|.++.++...+  +.+...|..+........            ..+-. ....+..+|+|.++.+.-+..+.+.
T Consensus       212 i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~------------~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~  278 (381)
T COG3391         212 IAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL------------PVGSG-APRGVAVDPAGKAAYVANSQGGTVS  278 (381)
T ss_pred             EEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc------------ccccC-CCCceeECCCCCEEEEEecCCCeEE
Confidence            89999999766666555  688888877743321100            00111 3445677888886665544444443

>KOG3621|consensus

Probab=96.32  E-value=0.082  Score=61.36  Aligned_cols=138  Identities=14%  Similarity=0.180  Sum_probs=91.0

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY  703 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~  703 (860)
                      |.==+++. .+.+++.|+.-|.+.+|+-..+..  ......+-.+.+..+..+++.. ++|.|+..|.            
T Consensus        36 v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~--~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~------------   99 (726)
T KOG3621|consen   36 VKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEM--RKLKNEGATGITCVRSVSSVEY-LVAAGTASGR------------   99 (726)
T ss_pred             EEEEEeec-CCceEEEecccceEEEEecCchhh--hcccccCccceEEEEEecchhH-hhhhhcCCce------------
Confidence            33334443 688999999999999999877533  2222333445556666676554 6888988887            


Q ss_pred             CCcEEEEeCCCCCCCCCeeee---cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc---eeeEEeccCCCceEE
Q psy4578         704 DQKLMIWDTRSHNVSKPSHTV---DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK---LKLHSFESHKDEIFQ  777 (860)
Q Consensus       704 dg~I~iwDl~~~~~~~~~~~~---~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~---~~~~~~~~h~~~V~~  777 (860)
                         |.++-+...........-   +.|...|++++|++++.. +.+|...|.|..-.+.+..   ...+.+..-.+.|..
T Consensus       100 ---V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k-~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQ  175 (726)
T KOG3621|consen  100 ---VSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMK-LYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQ  175 (726)
T ss_pred             ---EEeehhhccCCCcceeeccccccCCceEEEEEecccccE-EeecCCCceEEEEEechhhhhccccceeeccCcceEE
Confidence               777777654322222111   237789999999999996 8899999999988877621   112223334566766


Q ss_pred             EEEc
Q psy4578         778 VQWS  781 (860)
Q Consensus       778 l~fs  781 (860)
                      +...
T Consensus       176 lD~~  179 (726)
T KOG3621|consen  176 LDYL  179 (726)
T ss_pred             eecc
Confidence            6654

>KOG4640|consensus

Probab=96.25  E-value=0.017  Score=65.93  Aligned_cols=94  Identities=21%  Similarity=0.320  Sum_probs=68.5

Q ss_pred             CCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeE-EEEEcCCCCcEEE
Q psy4578         667 TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVN-CLSFNPYSEYILA  745 (860)
Q Consensus       667 ~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~-sl~~sp~g~~lla  745 (860)
                      ...+.-+.|+|.-. ++|.+..+|.+.+.+...       -|+|++.            -|...++ +++|.|+|+ ++|
T Consensus        20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~-------qRlwtip------------~p~~~v~~sL~W~~DGk-lla   78 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNW-------QRLWTIP------------IPGENVTASLCWRPDGK-LLA   78 (665)
T ss_pred             ccceEEEEEcCccc-hhheeccCCcEEEEEecc-------ceeEecc------------CCCCccceeeeecCCCC-EEE
Confidence            45678899999887 799999999844433331       3455544            3444555 999999999 699


Q ss_pred             EeeCCCcEEEEeCCCCceeeEE-eccCCCceEEEEEcC
Q psy4578         746 TGSADKTVALWDLRNLKLKLHS-FESHKDEIFQVQWSP  782 (860)
Q Consensus       746 sgs~Dg~I~IWDl~~~~~~~~~-~~~h~~~V~~l~fsp  782 (860)
                      .|-.||+|++.|+..+.. +.. ...-...|.++.|.+
T Consensus        79 Vg~kdG~I~L~Dve~~~~-l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   79 VGFKDGTIRLHDVEKGGR-LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EEecCCeEEEEEccCCCc-eeccccccccchheeeccc
Confidence            999999999999999886 333 223456778888863

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.21  E-value=0.21  Score=57.29  Aligned_cols=162  Identities=14%  Similarity=0.204  Sum_probs=98.6

Q ss_pred             hhhhhhcccceeeeEeeccCCcEEEEEe--CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC----CCeEEEEEe
Q psy4578         614 ICQLLDKLRLLIDVAWHLLHESLFGSVA--DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY----SEYILATGS  687 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~~~~~lasgs--~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~----g~~llasgs  687 (860)
                      +..+.+.-.++.+++|. ++...+.+.-  .+|.+++=|..          ..|.-..|..+.|.|-    ...++|+-.
T Consensus        12 lNaL~qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~----------viGqFEhV~GlsW~P~~~~~~paLLAVQH   80 (671)
T PF15390_consen   12 LNALHQAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK----------VIGQFEHVHGLSWAPPCTADTPALLAVQH   80 (671)
T ss_pred             hHHHHhhhccccceEec-CCCEEEEEeeeeeCCccccCCcc----------EeeccceeeeeeecCcccCCCCceEEEec
Confidence            34455566789999998 3555555543  34444443321          1234467999999985    334566654


Q ss_pred             CCCceeeecccccccCCCcEEEEeCCCC--CCCCCeeeecCCC---C--CeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578         688 ADKTQFEVEEEEEENYDQKLMIWDTRSH--NVSKPSHTVDAHT---A--EVNCLSFNPYSEYILATGSADKTVALWDLRN  760 (860)
Q Consensus       688 ~Dg~i~~~~~~~~~~~dg~I~iwDl~~~--~~~~~~~~~~~h~---~--~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~  760 (860)
                      ...                |.||.+...  +..+.+..-..+-   -  --.++.|||... +|+.=.....-.+++++.
T Consensus        81 kkh----------------VtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~  143 (671)
T PF15390_consen   81 KKH----------------VTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHC  143 (671)
T ss_pred             cce----------------EEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeee
Confidence            433                889987522  1112222211111   1  124678999988 565554444445667765


Q ss_pred             CceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECC
Q psy4578         761 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  803 (860)
Q Consensus       761 ~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~  803 (860)
                      ....+..--...+.|.|.+|.+||+.++++.|..=.-++||-.
T Consensus       144 d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  144 DSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            5544444445678999999999999987777777677889854

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.18  E-value=0.11  Score=59.73  Aligned_cols=173  Identities=12%  Similarity=0.164  Sum_probs=88.0

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN  702 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~  702 (860)
                      ....++++| +++.+++ +.||.-.|+.....   +..     ..+.....+|.+.++  +|+-...++           
T Consensus        34 ~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~---r~k-----~~G~g~~~vw~~~n~--yAv~~~~~~-----------   90 (443)
T PF04053_consen   34 YPQSLSHNP-NGRFVLV-CGDGEYEIYTALAW---RNK-----AFGSGLSFVWSSRNR--YAVLESSST-----------   90 (443)
T ss_dssp             --SEEEE-T-TSSEEEE-EETTEEEEEETTTT---EEE-----EEEE-SEEEE-TSSE--EEEE-TTS------------
T ss_pred             CCeeEEECC-CCCEEEE-EcCCEEEEEEccCC---ccc-----ccCceeEEEEecCcc--EEEEECCCe-----------
Confidence            467899999 6777766 55788888884331   111     134567789998555  566666666           


Q ss_pred             CCCcEEEE-eCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEc
Q psy4578         703 YDQKLMIW-DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS  781 (860)
Q Consensus       703 ~dg~I~iw-Dl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fs  781 (860)
                          |.++ ++...    ....+.. ...+..+-.   |. +|+..+. +.|.+||..+++. +......  .|..+.|+
T Consensus        91 ----I~I~kn~~~~----~~k~i~~-~~~~~~If~---G~-LL~~~~~-~~i~~yDw~~~~~-i~~i~v~--~vk~V~Ws  153 (443)
T PF04053_consen   91 ----IKIYKNFKNE----VVKSIKL-PFSVEKIFG---GN-LLGVKSS-DFICFYDWETGKL-IRRIDVS--AVKYVIWS  153 (443)
T ss_dssp             ----EEEEETTEE-----TT------SS-EEEEE----SS-SEEEEET-TEEEEE-TTT--E-EEEESS---E-EEEEE-
T ss_pred             ----EEEEEcCccc----cceEEcC-CcccceEEc---Cc-EEEEECC-CCEEEEEhhHcce-eeEEecC--CCcEEEEE
Confidence                8885 44322    1111211 112334433   66 4655554 4899999999886 7766632  48999999


Q ss_pred             CCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccC
Q psy4578         782 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN  840 (860)
Q Consensus       782 p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd  840 (860)
                      ++|.. ++..+ +..+.+++.+......   ..++|..........-...|.+.+|..+
T Consensus       154 ~~g~~-val~t-~~~i~il~~~~~~~~~---~~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  154 DDGEL-VALVT-KDSIYILKYNLEAVAA---IPEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             TTSSE-EEEE--S-SEEEEEE-HHHHHH---BTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             CCCCE-EEEEe-CCeEEEEEecchhccc---ccccCchhceEEEEEecceeEEEEEEcC
Confidence            99985 55555 5578888765421100   1112222233333333567888888876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621|consensus

Probab=96.18  E-value=0.025  Score=65.45  Aligned_cols=114  Identities=19%  Similarity=0.267  Sum_probs=81.5

Q ss_pred             CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578         728 TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       728 ~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~  807 (860)
                      ...|.--+++..+.+ ++.|+.-|.+++|+-.++........+..+.+..+..+++.. ++|.|+..|.|.++.++....
T Consensus        33 ~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   33 PARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             cceEEEEEeecCCce-EEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCC
Confidence            344554556667786 889999999999998877754444444556666777888775 588888999999998887222


Q ss_pred             ccccccccCCCCccEEE---ecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         808 EQSTEDAEDGPPELLFI---HGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       808 ~~~~~~~~~~~~~~i~~---~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                                 +..++.   ...|...|++++|++++.. +.+|...|.|.
T Consensus       111 -----------~~~~~~t~~d~~~~~rVTal~Ws~~~~k-~ysGD~~Gkv~  149 (726)
T KOG3621|consen  111 -----------RDLDYVTPCDKSHKCRVTALEWSKNGMK-LYSGDSQGKVV  149 (726)
T ss_pred             -----------CcceeeccccccCCceEEEEEecccccE-EeecCCCceEE
Confidence                       122221   2237889999999999997 55777777765

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.07  E-value=0.25  Score=58.03  Aligned_cols=102  Identities=13%  Similarity=0.119  Sum_probs=59.5

Q ss_pred             CcEEEEeCCC----CceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec
Q psy4578         751 KTVALWDLRN----LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG  826 (860)
Q Consensus       751 g~I~IWDl~~----~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~  826 (860)
                      +.|.+.|.++    +.. +..+-.-......+.++|||+++++++..++++.|.|+.+......-.  - .+...+..-.
T Consensus       296 n~V~VID~~t~~~~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~--~-~~~~~vvaev  371 (635)
T PRK02888        296 SKVPVVDGRKAANAGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK--I-KPRDAVVAEP  371 (635)
T ss_pred             CEEEEEECCccccCCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc--C-CccceEEEee
Confidence            5588888777    222 222323455678899999999988888899999999999855321100  0 0111111111


Q ss_pred             CccCceEEEEEccCCCeEEEEEe-CCCeEeec
Q psy4578         827 GHTAKISDFSWNPNEPWVICSVS-EDNIMQKP  857 (860)
Q Consensus       827 ~h~~~I~~i~~spdg~~Llasgs-~Dg~IrI~  857 (860)
                      .-...-...+|+++|. ..+|.- +..++++.
T Consensus       372 evGlGPLHTaFDg~G~-aytslf~dsqv~kwn  402 (635)
T PRK02888        372 ELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWN  402 (635)
T ss_pred             ccCCCcceEEECCCCC-EEEeEeecceeEEEe
Confidence            1122345678888887 444444 34444444

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.99  E-value=1.1  Score=51.30  Aligned_cols=210  Identities=12%  Similarity=0.117  Sum_probs=108.2

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCc----EEEEEcCCCCcccCeee-ccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQK----LMIWDTRSHNVSKPSHT-VDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~----I~IWd~~~~~~~~~~~~-~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      .+..++++|++..++++-+..|.    ++++|+.++..   +.. +..  .....+.|.+++..++.+...+...    .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~---l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~----~  195 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF---LPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQR----T  195 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE---EEEEEEE--EESEEEEECTTSSEEEEEECSTTTS----S
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC---cCCcccc--cccceEEEeCCCCEEEEEEeCcccc----c
Confidence            34467788844444445455554    99999998632   221 111  1123499999999766766554320    0


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCeeeecCCCCC--eEEEEEcCCCCcEEEEeeCCC---cEEEEeCCCC---ceeeEEec
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAE--VNCLSFNPYSEYILATGSADK---TVALWDLRNL---KLKLHSFE  769 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~--I~sl~~sp~g~~llasgs~Dg---~I~IWDl~~~---~~~~~~~~  769 (860)
                      . .......|..|.+.+... .....+......  ...+..++++++++++.....   .+.+.|....   ......+.
T Consensus       196 ~-~~~~~~~v~~~~~gt~~~-~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~  273 (414)
T PF02897_consen  196 S-DSGYPRQVYRHKLGTPQS-EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS  273 (414)
T ss_dssp             --CCGCCEEEEEEETTS-GG-G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE
T ss_pred             c-cCCCCcEEEEEECCCChH-hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe
Confidence            0 122244588888877532 212233333222  568899999998777665544   4778888774   22233333


Q ss_pred             cCCCceE-EEEEcCCCCCEEEEEE---CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEE
Q psy4578         770 SHKDEIF-QVQWSPHNETILASSG---TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI  845 (860)
Q Consensus       770 ~h~~~V~-~l~fsp~g~~lL~tgs---~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Ll  845 (860)
                      .....+. .+... .+.+ ++...   ..+.|.-.++.......           ....+..+...+.--.+...+.+|+
T Consensus       274 ~~~~~~~~~v~~~-~~~~-yi~Tn~~a~~~~l~~~~l~~~~~~~-----------~~~~l~~~~~~~~l~~~~~~~~~Lv  340 (414)
T PF02897_consen  274 PREDGVEYYVDHH-GDRL-YILTNDDAPNGRLVAVDLADPSPAE-----------WWTVLIPEDEDVSLEDVSLFKDYLV  340 (414)
T ss_dssp             ESSSS-EEEEEEE-TTEE-EEEE-TT-TT-EEEEEETTSTSGGG-----------EEEEEE--SSSEEEEEEEEETTEEE
T ss_pred             CCCCceEEEEEcc-CCEE-EEeeCCCCCCcEEEEeccccccccc-----------ceeEEcCCCCceeEEEEEEECCEEE
Confidence            3333443 34333 3433 33332   33667667766633210           0112223444333333444566677


Q ss_pred             EEEeCCCeEee
Q psy4578         846 CSVSEDNIMQK  856 (860)
Q Consensus       846 asgs~Dg~IrI  856 (860)
                      +....++.-+|
T Consensus       341 l~~~~~~~~~l  351 (414)
T PF02897_consen  341 LSYRENGSSRL  351 (414)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEECCccEE
Confidence            77777776665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4640|consensus

Probab=95.98  E-value=0.032  Score=63.83  Aligned_cols=79  Identities=19%  Similarity=0.361  Sum_probs=65.3

Q ss_pred             CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceE-EEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         728 TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIF-QVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       728 ~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~-~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      ...|.-+.|+|.-. ++|++..+|.|.+..++ .+. +.++.-|...++ +++|.|||+ +++.|-.||+|++.|+.++.
T Consensus        20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qR-lwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQR-LWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccc-hhheeccCCcEEEEEec-cce-eEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCC
Confidence            45678899999888 69999999999999888 443 566665666666 999999998 58999999999999999866


Q ss_pred             cccc
Q psy4578         807 EEQS  810 (860)
Q Consensus       807 ~~~~  810 (860)
                      ....
T Consensus        96 ~l~~   99 (665)
T KOG4640|consen   96 RLVS   99 (665)
T ss_pred             ceec
Confidence            5443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.93  E-value=0.54  Score=53.73  Aligned_cols=33  Identities=18%  Similarity=0.145  Sum_probs=27.4

Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~  805 (860)
                      .+++..++.||+|++ ++.-..+|.+.+.+..-.
T Consensus       216 ~~~i~~iavSpng~~-iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKF-IALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             CCCeEEEEECCCCCE-EEEEECCCCEEEEECccc
Confidence            468999999999996 788888999999876553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>smart00320 WD40 WD40 repeats

Probab=95.90  E-value=0.015  Score=40.13  Aligned_cols=36  Identities=39%  Similarity=0.693  Sum_probs=30.9

Q ss_pred             eeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578         721 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD  757 (860)
Q Consensus       721 ~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD  757 (860)
                      ...+..|...|.++.|++.+. ++++|+.||.+++||
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            445567888999999999887 589999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.79  E-value=0.21  Score=45.33  Aligned_cols=103  Identities=17%  Similarity=0.202  Sum_probs=68.0

Q ss_pred             eeEEEE---ccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEE
Q psy4578         670 VNCLSF---NPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT  746 (860)
Q Consensus       670 V~~l~~---sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llas  746 (860)
                      |+++++   ..+|..-|++|+.|..               |++|+-.     ..+..+. -+..|++++-...+.  ++.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~---------------IRvf~~~-----e~~~Ei~-e~~~v~~L~~~~~~~--F~Y   58 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFE---------------IRVFKGD-----EIVAEIT-ETDKVTSLCSLGGGR--FAY   58 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcE---------------EEEEeCC-----cEEEEEe-cccceEEEEEcCCCE--EEE
Confidence            445554   4466677999999998               9999765     3334443 356788888777654  889


Q ss_pred             eeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC---CCCCEEEEEECCCcEEE
Q psy4578         747 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP---HNETILASSGTDRRLHV  799 (860)
Q Consensus       747 gs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp---~g~~lL~tgs~Dg~I~i  799 (860)
                      |..+|+|-+|+-....+   ..+ ....+.++++..   +|..-|++|-.+|.|-+
T Consensus        59 ~l~NGTVGvY~~~~RlW---RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   59 ALANGTVGVYDRSQRLW---RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EecCCEEEEEeCcceee---eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            99999999998754333   122 223355655543   44445788888887753

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.78  E-value=0.68  Score=51.01  Aligned_cols=146  Identities=14%  Similarity=0.160  Sum_probs=86.7

Q ss_pred             CcEEEEEeC----------CCcEEEEEcCCC-C---cccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         634 ESLFGSVAD----------DQKLMIWDTRSH-N---VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       634 ~~~lasgs~----------DG~I~IWd~~~~-~---~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      ..++++|+.          .|.|.++++... .   ..+.+.. ....++|++++-.  +.+ +++|.. +.        
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~--~~~-lv~~~g-~~--------  108 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF--NGR-LVVAVG-NK--------  108 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEE--TTE-EEEEET-TE--------
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhh--CCE-EEEeec-CE--------
Confidence            466776653          289999999873 1   1122222 2346889988876  444 344432 33        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC--CceeeEEeccCCCceEE
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN--LKLKLHSFESHKDEIFQ  777 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~--~~~~~~~~~~h~~~V~~  777 (860)
                             |.+|++...+......... ....+.++...  ++ .++.|.....+.++..+.  .......-......+++
T Consensus       109 -------l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~  177 (321)
T PF03178_consen  109 -------LYVYDLDNSKTLLKKAFYD-SPFYITSLSVF--KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTA  177 (321)
T ss_dssp             -------EEEEEEETTSSEEEEEEE--BSSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEE
T ss_pred             -------EEEEEccCcccchhhheec-ceEEEEEEecc--cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEE
Confidence                   8999998764112222222 22356666655  55 477888888888774443  22222222334567899


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         778 VQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       778 l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      +.|-++++ .++.+..+|.+.++....
T Consensus       178 ~~~l~d~~-~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  178 AEFLVDED-TIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred             EEEecCCc-EEEEEcCCCeEEEEEECC
Confidence            99987776 588999999999998864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.74  E-value=0.21  Score=45.34  Aligned_cols=102  Identities=18%  Similarity=0.156  Sum_probs=64.4

Q ss_pred             eeeeEeec---cCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         624 LIDVAWHL---LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       624 V~~v~~sp---~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      |++++++.   ++.+-|++|+.|..||+|+-..     .+..+ .....|+++.-...++  |+.+..+|+|-++     
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----~~~Ei-~e~~~v~~L~~~~~~~--F~Y~l~NGTVGvY-----   68 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----IVAEI-TETDKVTSLCSLGGGR--FAYALANGTVGVY-----   68 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----EEEEE-ecccceEEEEEcCCCE--EEEEecCCEEEEE-----
Confidence            56677654   2346899999999999998653     23333 2356788888776644  8889999983332     


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE---cCCCCcEEEEeeCCCcEE
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF---NPYSEYILATGSADKTVA  754 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~---sp~g~~llasgs~Dg~I~  754 (860)
                         ++..++|.+++.             ..+.++.+   .-+|..-|++|-.+|.|-
T Consensus        69 ---~~~~RlWRiKSK-------------~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   69 ---DRSQRLWRIKSK-------------NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ---eCcceeeeeccC-------------CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence               122445544432             22444443   334555588998888774

>smart00320 WD40 WD40 repeats

Probab=95.62  E-value=0.025  Score=38.92  Aligned_cols=36  Identities=31%  Similarity=0.668  Sum_probs=31.2

Q ss_pred             eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         765 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       765 ~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      ...+..|...|.++.|++.+. ++++++.||.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            456677889999999999886 588999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=95.49  E-value=0.47  Score=53.49  Aligned_cols=144  Identities=14%  Similarity=-0.042  Sum_probs=77.9

Q ss_pred             cEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC-C---C---e-eEEEEccCCCeEEEEEeCCCceeeecccccccCCCc
Q psy4578         635 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT-A---E---V-NCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQK  706 (860)
Q Consensus       635 ~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~-~---~---V-~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~  706 (860)
                      ..++.+..+|.+..+|..+++..-......... .   .   + .+..+  .+.. +.+++.+|.               
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~-vy~~~~~g~---------------  252 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQ-VYAVSYQGR---------------  252 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCE-EEEEEcCCE---------------
Confidence            356778888999999998864311110000000 0   0   0 01111  2343 555666776               


Q ss_pred             EEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC-CceEEEEEcCCCC
Q psy4578         707 LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK-DEIFQVQWSPHNE  785 (860)
Q Consensus       707 I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~-~~V~~l~fsp~g~  785 (860)
                      +..||..+++   .+.... . ........  .+.. ++.++.||.+..+|..+++. +....... ....+...  .+.
T Consensus       253 l~a~d~~tG~---~~W~~~-~-~~~~~p~~--~~~~-vyv~~~~G~l~~~d~~tG~~-~W~~~~~~~~~~ssp~i--~g~  321 (377)
T TIGR03300       253 VAALDLRSGR---VLWKRD-A-SSYQGPAV--DDNR-LYVTDADGVVVALDRRSGSE-LWKNDELKYRQLTAPAV--VGG  321 (377)
T ss_pred             EEEEECCCCc---EEEeec-c-CCccCceE--eCCE-EEEECCCCeEEEEECCCCcE-EEccccccCCccccCEE--ECC
Confidence            8888887763   222222 1 11112222  3454 66778899999999988875 33222111 11222222  244


Q ss_pred             CEEEEEECCCcEEEEECCCCCcc
Q psy4578         786 TILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       786 ~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      . +++++.+|.++++|..+++..
T Consensus       322 ~-l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       322 Y-LVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             E-EEEEeCCCEEEEEECCCCCEE
Confidence            3 778899999999998885543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4441|consensus

Probab=95.45  E-value=0.49  Score=56.39  Aligned_cols=164  Identities=14%  Similarity=0.180  Sum_probs=87.6

Q ss_pred             cccceeeeEeeccCCcEEEEEeCC-C-----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADD-Q-----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~D-G-----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      ....-.+++..  ++.+.++|+.| |     ++-.||..++. +..+..+............   +..+.++||.||.  
T Consensus       321 ~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~--  392 (571)
T KOG4441|consen  321 SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGE--  392 (571)
T ss_pred             cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc-eeccCCccCccccceeEEE---CCEEEEEeccccc--
Confidence            33445566666  47888999998 3     46677776543 3333333322222222222   3458899998875  


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC------cEEEEeCCCCceee-E
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK------TVALWDLRNLKLKL-H  766 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg------~I~IWDl~~~~~~~-~  766 (860)
                              ..-..+-.||..+.+. ..+..+.........+.+  +|. +.++|+.++      ++..||..+..+.. .
T Consensus       393 --------~~l~svE~YDp~~~~W-~~va~m~~~r~~~gv~~~--~g~-iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~  460 (571)
T KOG4441|consen  393 --------KSLNSVECYDPVTNKW-TPVAPMLTRRSGHGVAVL--GGK-LYIIGGGDGSSNCLNSVECYDPETNTWTLIA  460 (571)
T ss_pred             --------cccccEEEecCCCCcc-cccCCCCcceeeeEEEEE--CCE-EEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence                    2233588899887643 333322221222222222  344 788888654      46788888776511 1


Q ss_pred             EeccCCCceEEEEEcCCCCCEEEEEECCCc-----EEEEECCCCC
Q psy4578         767 SFESHKDEIFQVQWSPHNETILASSGTDRR-----LHVWDLSKIG  806 (860)
Q Consensus       767 ~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~-----I~iWdl~~~~  806 (860)
                      .+..-..... ++.- ++ .|.+.||.|+.     +..||..+..
T Consensus       461 ~M~~~R~~~g-~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  461 PMNTRRSGFG-VAVL-NG-KIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             Ccccccccce-EEEE-CC-EEEEECCccCCCccceEEEEcCCCCc
Confidence            1111111111 2222 23 47888887763     6677777643

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.40  E-value=1.4  Score=52.60  Aligned_cols=207  Identities=13%  Similarity=0.129  Sum_probs=108.5

Q ss_pred             hcccceeeeEeeccCCcEEEEEe-----CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVA-----DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs-----~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      +....+.+.+.+|++....++..     .|+.-.+|-...+.....+  ..+  ...+.-.|+|+|..+ ++......+.
T Consensus       347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g--~~~t~PsWspDG~~l-w~v~dg~~~~  421 (591)
T PRK13616        347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEG--HSLTRPSWSLDADAV-WVVVDGNTVV  421 (591)
T ss_pred             ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecC--CCCCCceECCCCCce-EEEecCcceE
Confidence            33356889999995444444432     3444455543322212222  222  247889999998864 4443322211


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEE---EeCCCCceee---EE
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL---WDLRNLKLKL---HS  767 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~I---WDl~~~~~~~---~~  767 (860)
                      ....   ....+++.+.++..+.. .  .   ...+.|..+.|||||..+.+..  +|.|.+   -....+...+   ..
T Consensus       422 ~v~~---~~~~gql~~~~vd~ge~-~--~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~  490 (591)
T PRK13616        422 RVIR---DPATGQLARTPVDASAV-A--S---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPRE  490 (591)
T ss_pred             EEec---cCCCceEEEEeccCchh-h--h---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEE
Confidence            1110   11245566667765422 1  1   2356799999999999855544  477776   3333333211   11


Q ss_pred             ec-cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEE
Q psy4578         768 FE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC  846 (860)
Q Consensus       768 ~~-~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Lla  846 (860)
                      +. +-...+.++.|..++.  |+.+..++.-.+|.+.-......           .........++.+++=+++ . ++ 
T Consensus       491 l~~~l~~~~~~l~W~~~~~--L~V~~~~~~~~v~~v~vDG~~~~-----------~~~~~n~~~~v~~vaa~~~-~-iy-  554 (591)
T PRK13616        491 VGPGLGDTAVSLDWRTGDS--LVVGRSDPEHPVWYVNLDGSNSD-----------ALPSRNLSAPVVAVAASPS-T-VY-  554 (591)
T ss_pred             eecccCCccccceEecCCE--EEEEecCCCCceEEEecCCcccc-----------ccCCCCccCceEEEecCCc-e-EE-
Confidence            22 2334468899999997  34555555555665543221111           1011123456777777763 3 33 


Q ss_pred             EEeCCCeEeec
Q psy4578         847 SVSEDNIMQKP  857 (860)
Q Consensus       847 sgs~Dg~IrI~  857 (860)
                      ....++.++.+
T Consensus       555 v~~~~g~~~l~  565 (591)
T PRK13616        555 VTDARAVLQLP  565 (591)
T ss_pred             EEcCCceEEec
Confidence            45666777653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.29  E-value=0.22  Score=57.16  Aligned_cols=142  Identities=12%  Similarity=0.181  Sum_probs=72.5

Q ss_pred             CCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEE
Q psy4578         666 HTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA  745 (860)
Q Consensus       666 h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~lla  745 (860)
                      .......+.++|+|+++++ + .||.               ..++.....   +  ..   ..+.-...+|.+.+.  +|
T Consensus        31 ~~~~p~~ls~npngr~v~V-~-g~ge---------------Y~iyt~~~~---r--~k---~~G~g~~~vw~~~n~--yA   83 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-C-GDGE---------------YEIYTALAW---R--NK---AFGSGLSFVWSSRNR--YA   83 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-E-ETTE---------------EEEEETTTT---E--EE---EEEE-SEEEE-TSSE--EE
T ss_pred             CCcCCeeEEECCCCCEEEE-E-cCCE---------------EEEEEccCC---c--cc---ccCceeEEEEecCcc--EE
Confidence            3455789999999997444 3 3554               667763221   1  11   124456789999665  66


Q ss_pred             EeeCCCcEEEE-eCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEE
Q psy4578         746 TGSADKTVALW-DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI  824 (860)
Q Consensus       746 sgs~Dg~I~IW-Dl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~  824 (860)
                      +-..+++|.|+ +..+..  ...+.. ...+..+-.   |.. |...+ ++.|.+||..+...              +..
T Consensus        84 v~~~~~~I~I~kn~~~~~--~k~i~~-~~~~~~If~---G~L-L~~~~-~~~i~~yDw~~~~~--------------i~~  141 (443)
T PF04053_consen   84 VLESSSTIKIYKNFKNEV--VKSIKL-PFSVEKIFG---GNL-LGVKS-SDFICFYDWETGKL--------------IRR  141 (443)
T ss_dssp             EE-TTS-EEEEETTEE-T--T------SS-EEEEE----SSS-EEEEE-TTEEEEE-TTT--E--------------EEE
T ss_pred             EEECCCeEEEEEcCcccc--ceEEcC-CcccceEEc---CcE-EEEEC-CCCEEEEEhhHcce--------------eeE
Confidence            76778899996 332222  122221 123444432   764 54554 44899999998443              333


Q ss_pred             ecCccCceEEEEEccCCCeEEEEEeCCCeEeeccC
Q psy4578         825 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPFK  859 (860)
Q Consensus       825 ~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~f~  859 (860)
                      ..  ..+|..+.|+++|.+ ++-.+.+.+....|.
T Consensus       142 i~--v~~vk~V~Ws~~g~~-val~t~~~i~il~~~  173 (443)
T PF04053_consen  142 ID--VSAVKYVIWSDDGEL-VALVTKDSIYILKYN  173 (443)
T ss_dssp             ES--S-E-EEEEE-TTSSE-EEEE-S-SEEEEEE-
T ss_pred             Ee--cCCCcEEEEECCCCE-EEEEeCCeEEEEEec
Confidence            33  234899999999995 666677777665553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=95.17  E-value=0.38  Score=54.24  Aligned_cols=134  Identities=14%  Similarity=0.096  Sum_probs=78.1

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR  713 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~  713 (860)
                      +..+++++.+|.+..||..+++.   +-... .. .......  .+.. +.+++.+|.               +..+|..
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~---~W~~~-~~-~~~~p~~--~~~~-vyv~~~~G~---------------l~~~d~~  297 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRV---LWKRD-AS-SYQGPAV--DDNR-LYVTDADGV---------------VVALDRR  297 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcE---EEeec-cC-CccCceE--eCCE-EEEECCCCe---------------EEEEECC
Confidence            44667778899999999988642   22211 11 1112222  3444 556667777               8888887


Q ss_pred             CCCCCCCeeeecCC-CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEE-EEEcCCCCCEEEEE
Q psy4578         714 SHNVSKPSHTVDAH-TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ-VQWSPHNETILASS  791 (860)
Q Consensus       714 ~~~~~~~~~~~~~h-~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~-l~fsp~g~~lL~tg  791 (860)
                      +++   .+...... .....+...  .+. .+++++.+|.++++|..+++. +..+..+...+.. ..+. +++  |+.+
T Consensus       298 tG~---~~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~~-~~~~~~~~~~~~~sp~~~-~~~--l~v~  367 (377)
T TIGR03300       298 SGS---ELWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGSF-VARLKTDGSGIASPPVVV-GDG--LLVQ  367 (377)
T ss_pred             CCc---EEEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCCCE-EEEEEcCCCccccCCEEE-CCE--EEEE
Confidence            663   22222111 111222222  245 377889999999999999887 6666655543322 2333 343  6788


Q ss_pred             ECCCcEEEE
Q psy4578         792 GTDRRLHVW  800 (860)
Q Consensus       792 s~Dg~I~iW  800 (860)
                      +.||.|+.|
T Consensus       368 ~~dG~l~~~  376 (377)
T TIGR03300       368 TRDGDLYAF  376 (377)
T ss_pred             eCCceEEEe
Confidence            899998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.10  E-value=0.6  Score=48.52  Aligned_cols=140  Identities=15%  Similarity=0.089  Sum_probs=75.9

Q ss_pred             CCcEEEEEcCCCCcccCeeeccCC--CCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCC
Q psy4578         643 DQKLMIWDTRSHNVSKPSHTVDAH--TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKP  720 (860)
Q Consensus       643 DG~I~IWd~~~~~~~~~~~~~~~h--~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~  720 (860)
                      +|+|..||..+++.   +-.....  .....+... +++.+ +.+++.++.               +..||..++   +.
T Consensus         2 ~g~l~~~d~~tG~~---~W~~~~~~~~~~~~~~~~-~~~~~-v~~~~~~~~---------------l~~~d~~tG---~~   58 (238)
T PF13360_consen    2 DGTLSALDPRTGKE---LWSYDLGPGIGGPVATAV-PDGGR-VYVASGDGN---------------LYALDAKTG---KV   58 (238)
T ss_dssp             TSEEEEEETTTTEE---EEEEECSSSCSSEEETEE-EETTE-EEEEETTSE---------------EEEEETTTS---EE
T ss_pred             CCEEEEEECCCCCE---EEEEECCCCCCCccceEE-EeCCE-EEEEcCCCE---------------EEEEECCCC---CE
Confidence            67888899877532   2222110  112221122 23554 555566776               888888777   33


Q ss_pred             eeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE-eccCC---CceEEEEEcCCCCCEEEEEECCCc
Q psy4578         721 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS-FESHK---DEIFQVQWSPHNETILASSGTDRR  796 (860)
Q Consensus       721 ~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~-~~~h~---~~V~~l~fsp~g~~lL~tgs~Dg~  796 (860)
                      +..... ...+...... .+.. ++.++.++.++.+|..+++. +.. .....   ...........+.. ++.+..++.
T Consensus        59 ~W~~~~-~~~~~~~~~~-~~~~-v~v~~~~~~l~~~d~~tG~~-~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~  133 (238)
T PF13360_consen   59 LWRFDL-PGPISGAPVV-DGGR-VYVGTSDGSLYALDAKTGKV-LWSIYLTSSPPAGVRSSSSPAVDGDR-LYVGTSSGK  133 (238)
T ss_dssp             EEEEEC-SSCGGSGEEE-ETTE-EEEEETTSEEEEEETTTSCE-EEEEEE-SSCTCSTB--SEEEEETTE-EEEEETCSE
T ss_pred             EEEeec-cccccceeee-cccc-cccccceeeeEecccCCcce-eeeeccccccccccccccCceEecCE-EEEEeccCc
Confidence            333332 2221111122 2332 55666888999999999887 433 22211   11122222223554 677778999


Q ss_pred             EEEEECCCCCcccc
Q psy4578         797 LHVWDLSKIGEEQS  810 (860)
Q Consensus       797 I~iWdl~~~~~~~~  810 (860)
                      |..+|..+++....
T Consensus       134 l~~~d~~tG~~~w~  147 (238)
T PF13360_consen  134 LVALDPKTGKLLWK  147 (238)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEEecCCCcEEEE
Confidence            99999998766443

...

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=94.96  E-value=0.61  Score=52.87  Aligned_cols=173  Identities=10%  Similarity=0.094  Sum_probs=89.3

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc------CCCCCeeEEEEcc-----CC--CeEEEEEe
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD------AHTAEVNCLSFNP-----YS--EYILATGS  687 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~------~h~~~V~~l~~sp-----~g--~~llasgs  687 (860)
                      .++|++++.+  +-.++|.|..+|.+.|.|++....... ..+.      .....++++.|.-     |+  .-.+.+|+
T Consensus        86 ~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   86 QGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             CCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            5789999997  678999999999999999976321100 1111      1345688898862     11  13578888


Q ss_pred             CCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEE-EcC--------------------CCCcEEEE
Q psy4578         688 ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS-FNP--------------------YSEYILAT  746 (860)
Q Consensus       688 ~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~-~sp--------------------~g~~llas  746 (860)
                      ..|.+..+.+.-.....-.+...+...           .+.+.|..+. ++.                    .-..++++
T Consensus       163 n~G~v~~fkIlp~~~g~f~v~~~~~~~-----------~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv  231 (395)
T PF08596_consen  163 NSGNVLTFKILPSSNGRFSVQFAGATT-----------NHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV  231 (395)
T ss_dssp             TTSEEEEEEEEE-GGG-EEEEEEEEE-------------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE
T ss_pred             CCCCEEEEEEecCCCCceEEEEeeccc-----------cCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE
Confidence            889866665543222222333333321           1222222222 110                    01112333


Q ss_pred             eeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC----CCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578         747 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP----HNETILASSGTDRRLHVWDLSKIGEEQ  809 (860)
Q Consensus       747 gs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp----~g~~lL~tgs~Dg~I~iWdl~~~~~~~  809 (860)
                       ..+..++++..-+.+...+.+ ...-.+..+.+-+    .+...|++-..+|.|+++.+...+...
T Consensus       232 -vSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~  296 (395)
T PF08596_consen  232 -VSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIK  296 (395)
T ss_dssp             -E-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEE
T ss_pred             -EcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhh
Confidence             346789999988877634444 2323344455531    233457888899999999999866543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.96  E-value=2  Score=48.02  Aligned_cols=160  Identities=14%  Similarity=0.121  Sum_probs=85.8

Q ss_pred             CCCeeEEEEccCCCeE-EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCe---EEEEEc-CCCC
Q psy4578         667 TAEVNCLSFNPYSEYI-LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEV---NCLSFN-PYSE  741 (860)
Q Consensus       667 ~~~V~~l~~sp~g~~l-lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I---~sl~~s-p~g~  741 (860)
                      ..-+..+.|.+++..+ +...+.+..            ...+.++|..++.. +.+. .....+.|   ....+. +++.
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~------------~~~l~~~d~~tg~~-~~~~-~e~~~~Wv~~~~~~~~~~~~~~  248 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQN------------RLDLVLCDASTGET-RVVL-EETSDGWVDVYDPPHFLGPDGN  248 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTST------------EEEEEEEEECTTTC-EEEE-EEESSSSSSSSSEEEE-TTTSS
T ss_pred             ccCcccceecCCCcEEEEEEcccCCC------------EEEEEEEECCCCce-eEEE-EecCCcceeeecccccccCCCC
Confidence            4557788888888733 333333333            22266667766532 1111 11122222   245554 7777


Q ss_pred             cEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEE-EEEcCCCCCEEEEEECCC--cEEEEECCCCCcccccccccCCC
Q psy4578         742 YILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ-VQWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGP  818 (860)
Q Consensus       742 ~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~-l~fsp~g~~lL~tgs~Dg--~I~iWdl~~~~~~~~~~~~~~~~  818 (860)
                      .++.....||--+||-++........+....-.|.. +.|+++++.+.++|..++  .-++|.+....            
T Consensus       249 ~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~------------  316 (353)
T PF00930_consen  249 EFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS------------  316 (353)
T ss_dssp             EEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE------------
T ss_pred             EEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC------------
Confidence            667676788876665444333224455555556744 788999888777887643  44444433310            


Q ss_pred             CccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       819 ~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      ......+....+.-..+.|||+|++++.+++.-+
T Consensus       317 ~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~~  350 (353)
T PF00930_consen  317 GGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGPD  350 (353)
T ss_dssp             TTEEEESSTTSSTTEEEEE-TTSSEEEEEEESSS
T ss_pred             CCCeEeccCCCCCceEEEECCCCCEEEEEEcCCC
Confidence            0111222222222268999999999998888654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.91  E-value=0.53  Score=49.44  Aligned_cols=160  Identities=15%  Similarity=0.146  Sum_probs=95.4

Q ss_pred             CeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCe-----eeecCCCCCeEEEEEcCCCCcE
Q psy4578         669 EVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPS-----HTVDAHTAEVNCLSFNPYSEYI  743 (860)
Q Consensus       669 ~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~-----~~~~~h~~~I~sl~~sp~g~~l  743 (860)
                      ....++++|....-++-+-.-|+              ...++|....+....+     ..+.+|      -.|||+|.++
T Consensus        69 R~Hgi~~~p~~~ravafARrPGt--------------f~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~L  128 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGT--------------FAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLL  128 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCc--------------eEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEE
Confidence            34567788876665666666665              2567888776432221     123344      4799999975


Q ss_pred             EEEee----CCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEE-EC-------CCCCccccc
Q psy4578         744 LATGS----ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW-DL-------SKIGEEQST  811 (860)
Q Consensus       744 lasgs----~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iW-dl-------~~~~~~~~~  811 (860)
                      .+|-.    .-|.|-|||.+..-..+..+..|.-....+.|.+||+. ++.+  +|-|... |.       .+.+.....
T Consensus       129 YATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrt-lvva--nGGIethpdfgR~~lNldsMePSlvl  205 (366)
T COG3490         129 YATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRT-LVVA--NGGIETHPDFGRTELNLDSMEPSLVL  205 (366)
T ss_pred             EeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcE-EEEe--CCceecccccCccccchhhcCccEEE
Confidence            55532    23789999999776667888889888899999999996 4333  3445444 22       222211111


Q ss_pred             ccccCCCCccEEEec--CccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         812 EDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       812 ~~~~~~~~~~i~~~~--~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      .....+......++.  .+.-.|..++..+||. +++.|-..|
T Consensus       206 ld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G  247 (366)
T COG3490         206 LDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRG  247 (366)
T ss_pred             EeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeC
Confidence            111111111111222  4556789999999998 566665443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.91  E-value=1.8  Score=49.53  Aligned_cols=27  Identities=15%  Similarity=0.246  Sum_probs=21.9

Q ss_pred             cCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         829 TAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       829 ~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .+++..|+.||+|++ +|...++|.+.|
T Consensus       216 ~~~i~~iavSpng~~-iAl~t~~g~l~v  242 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKF-IALFTDSGNLWV  242 (410)
T ss_pred             CCCeEEEEECCCCCE-EEEEECCCCEEE
Confidence            468999999999995 667777787765

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.85  E-value=1.9  Score=47.13  Aligned_cols=206  Identities=10%  Similarity=-0.002  Sum_probs=107.3

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec-cCC-CCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV-DAH-TAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~-~~h-~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      .+...+.+.++...- .+..|+++..  -+.+++..++.....+... .+. ....+.+...|+|..  ..|+...    
T Consensus        61 ~~~~p~~~~~~~~~d-~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~--wfgt~~~----  131 (307)
T COG3386          61 VFPSPGGFSSGALID-AGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRI--WFGDMGY----  131 (307)
T ss_pred             EEECCCCcccceeec-CCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCE--EEeCCCc----
Confidence            344445555555553 3445554432  3566676543221111111 111 245567888898884  3333221    


Q ss_pred             ec-ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC--Cc----eeeEE
Q psy4578         695 VE-EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN--LK----LKLHS  767 (860)
Q Consensus       695 ~~-~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~--~~----~~~~~  767 (860)
                      +. ........|.++.+|. .+   ........+-..-++++|||+++.++++=+..+.|.-|++..  +.    .....
T Consensus       132 ~~~~~~~~~~~G~lyr~~p-~g---~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~  207 (307)
T COG3386         132 FDLGKSEERPTGSLYRVDP-DG---GVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD  207 (307)
T ss_pred             cccCccccCCcceEEEEcC-CC---CEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE
Confidence            00 0111223444444443 22   334444444555678999999987666666668888887762  11    11122


Q ss_pred             eccCCCceEEEEEcCCCCCEEEEEECCC-cEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc-cCCCeEE
Q psy4578         768 FESHKDEIFQVQWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-PNEPWVI  845 (860)
Q Consensus       768 ~~~h~~~V~~l~fsp~g~~lL~tgs~Dg-~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s-pdg~~Ll  845 (860)
                      +....+..-.++..-+|.. .+++..+| .|.+|+.. ++..              ....-....+++++|- ++.+.|+
T Consensus       208 ~~~~~G~PDG~~vDadG~l-w~~a~~~g~~v~~~~pd-G~l~--------------~~i~lP~~~~t~~~FgG~~~~~L~  271 (307)
T COG3386         208 FDEEPGLPDGMAVDADGNL-WVAAVWGGGRVVRFNPD-GKLL--------------GEIKLPVKRPTNPAFGGPDLNTLY  271 (307)
T ss_pred             ccCCCCCCCceEEeCCCCE-EEecccCCceEEEECCC-CcEE--------------EEEECCCCCCccceEeCCCcCEEE
Confidence            2234455666777777763 43444443 88888877 3332              2222233556777773 4566666


Q ss_pred             EEEeCC
Q psy4578         846 CSVSED  851 (860)
Q Consensus       846 asgs~D  851 (860)
                      +++...
T Consensus       272 iTs~~~  277 (307)
T COG3386         272 ITSARS  277 (307)
T ss_pred             EEecCC
Confidence            666655

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.82  E-value=1.9  Score=47.05  Aligned_cols=153  Identities=10%  Similarity=0.072  Sum_probs=84.6

Q ss_pred             eEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCc
Q psy4578         627 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQK  706 (860)
Q Consensus       627 v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~  706 (860)
                      -.|.+..+.++.+--..+.|.-|+..++..    ..+ .+.+.+.++..-..+.. ++++ ..|                
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~----~~~-~~p~~~~~~~~~d~~g~-Lv~~-~~g----------------   86 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK----RVF-PSPGGFSSGALIDAGGR-LIAC-EHG----------------   86 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce----EEE-ECCCCcccceeecCCCe-EEEE-ccc----------------
Confidence            346765555666666778899998876422    222 23344455555444543 3333 344                


Q ss_pred             EEEEeCCCCCCCCCeeeec-C-CCCCeEEEEEcCCCCcEEEEee-----C-----CCcEEEEeCCCCceeeEEeccCCCc
Q psy4578         707 LMIWDTRSHNVSKPSHTVD-A-HTAEVNCLSFNPYSEYILATGS-----A-----DKTVALWDLRNLKLKLHSFESHKDE  774 (860)
Q Consensus       707 I~iwDl~~~~~~~~~~~~~-~-h~~~I~sl~~sp~g~~llasgs-----~-----Dg~I~IWDl~~~~~~~~~~~~h~~~  774 (860)
                      +.+++..++.....+.... + .....+.+...|+|.+.+-+-+     .     -|.++.+|. .+.. ......+-..
T Consensus        87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~-~~l~~~~~~~  164 (307)
T COG3386          87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGV-VRLLDDDLTI  164 (307)
T ss_pred             cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCE-EEeecCcEEe
Confidence            4556654332111111111 1 1134567888999984332222     1     133444443 3332 4555555666


Q ss_pred             eEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         775 IFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      -+.++||||++.++++=+..+.|+-|++..
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~  194 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDP  194 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence            788999999987666666678999998874

>KOG2395|consensus

Probab=94.77  E-value=0.24  Score=55.95  Aligned_cols=144  Identities=17%  Similarity=0.215  Sum_probs=93.1

Q ss_pred             EEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe--E----EEEEeCCCceeeecccccccCCCcEEE
Q psy4578         636 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY--I----LATGSADKTQFEVEEEEEENYDQKLMI  709 (860)
Q Consensus       636 ~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~--l----lasgs~Dg~i~~~~~~~~~~~dg~I~i  709 (860)
                      ++.++.....++-.|++.|   +.+....-+.. |+-+.+.|++..  +    -+.|-.+..               |.-
T Consensus       348 il~~~~~~~~l~klDIE~G---KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~---------------vfr  408 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERG---KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNS---------------VFR  408 (644)
T ss_pred             EeeCCCCcCcceeeecccc---eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCc---------------eEE
Confidence            4555666667888888875   44555555554 677777776542  1    112333333               778


Q ss_pred             EeCCCCCCCCCeeeecCC----CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCC
Q psy4578         710 WDTRSHNVSKPSHTVDAH----TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE  785 (860)
Q Consensus       710 wDl~~~~~~~~~~~~~~h----~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~  785 (860)
                      ||.+-... ..+...++|    .....|.+-..+|.  +++||.+|.|++||- .+...-..+.+...+|..+..+.+|.
T Consensus       409 iDpRv~~~-~kl~~~q~kqy~~k~nFsc~aTT~sG~--IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGK  484 (644)
T KOG2395|consen  409 IDPRVQGK-NKLAVVQSKQYSTKNNFSCFATTESGY--IVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGK  484 (644)
T ss_pred             ecccccCc-ceeeeeeccccccccccceeeecCCce--EEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCc
Confidence            88875422 122222222    23456777666664  899999999999997 44443556788899999999999999


Q ss_pred             CEEEEEECCCcEEEEECCC
Q psy4578         786 TILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       786 ~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ++|+||  +..+.+-++.-
T Consensus       485 wil~Tc--~tyLlLi~t~~  501 (644)
T KOG2395|consen  485 WILATC--KTYLLLIDTLI  501 (644)
T ss_pred             EEEEec--ccEEEEEEEec
Confidence            866554  66777776553

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=94.64  E-value=2.3  Score=44.14  Aligned_cols=146  Identities=16%  Similarity=0.124  Sum_probs=78.7

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578         633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDT  712 (860)
Q Consensus       633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl  712 (860)
                      ++..+++++.++.+..||..+++.   +..... .+.+...... .+.. +++++.++.               +..+|.
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~---~W~~~~-~~~~~~~~~~-~~~~-v~v~~~~~~---------------l~~~d~   93 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKV---LWRFDL-PGPISGAPVV-DGGR-VYVGTSDGS---------------LYALDA   93 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEE---EEEEEC-SSCGGSGEEE-ETTE-EEEEETTSE---------------EEEEET
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE---EEEeec-cccccceeee-cccc-cccccceee---------------eEeccc
Confidence            455666678999999999988643   322222 2221111122 2333 455556666               888887


Q ss_pred             CCCCCCCCeeee-cCC--C-CCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc----------eEEE
Q psy4578         713 RSHNVSKPSHTV-DAH--T-AEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE----------IFQV  778 (860)
Q Consensus       713 ~~~~~~~~~~~~-~~h--~-~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~----------V~~l  778 (860)
                      .++   +.+... ...  . ...........+.. ++.+..+|.|..+|.++++. +.........          +.+-
T Consensus        94 ~tG---~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~  168 (238)
T PF13360_consen   94 KTG---KVLWSIYLTSSPPAGVRSSSSPAVDGDR-LYVGTSSGKLVALDPKTGKL-LWKYPVGEPRGSSPISSFSDINGS  168 (238)
T ss_dssp             TTS---CEEEEEEE-SSCTCSTB--SEEEEETTE-EEEEETCSEEEEEETTTTEE-EEEEESSTT-SS--EEEETTEEEE
T ss_pred             CCc---ceeeeeccccccccccccccCceEecCE-EEEEeccCcEEEEecCCCcE-EEEeecCCCCCCcceeeecccccc
Confidence            776   333331 111  0 11122222223553 77777799999999999987 4444433321          1122


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         779 QWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      ....++ . ++.++.+|.+.-+|+.+++
T Consensus       169 ~~~~~~-~-v~~~~~~g~~~~~d~~tg~  194 (238)
T PF13360_consen  169 PVISDG-R-VYVSSGDGRVVAVDLATGE  194 (238)
T ss_dssp             EECCTT-E-EEEECCTSSEEEEETTTTE
T ss_pred             eEEECC-E-EEEEcCCCeEEEEECCCCC
Confidence            222344 3 5566667754434988855

...

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.56  E-value=3.3  Score=43.99  Aligned_cols=159  Identities=12%  Similarity=0.148  Sum_probs=90.0

Q ss_pred             CeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee
Q psy4578         669 EVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS  748 (860)
Q Consensus       669 ~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs  748 (860)
                      .+.+.++++++..+.++...++.             ..+.++.....  ....  ..  ...+..-.|++++. +.+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~-------------~~L~~~~~~~~--~~~~--~~--g~~l~~PS~d~~g~-~W~v~~   84 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGG-------------RSLYVGPAGGP--VRPV--LT--GGSLTRPSWDPDGW-VWTVDD   84 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCC-------------CEEEEEcCCCc--ceee--cc--CCccccccccCCCC-EEEEEc
Confidence            68899999999975555522222             12445443322  1111  12  23677889999976 565656


Q ss_pred             CCCcEEEEe-CCCCceeeEEeccC--CCceEEEEEcCCCCCEEEEEE--CCCcEEEEECCCCCcccccccccCCCCccEE
Q psy4578         749 ADKTVALWD-LRNLKLKLHSFESH--KDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDAEDGPPELLF  823 (860)
Q Consensus       749 ~Dg~I~IWD-l~~~~~~~~~~~~h--~~~V~~l~fsp~g~~lL~tgs--~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~  823 (860)
                      .+...+++. ..++..........  ...|.++.++|||..+.+...  .++.|.+=-+.....-  .   .........
T Consensus        85 ~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g--~---~~~l~~~~~  159 (253)
T PF10647_consen   85 GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG--V---PRRLTGPRR  159 (253)
T ss_pred             CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC--C---cceeccceE
Confidence            666666663 33333212222211  128999999999998655552  3577777665542221  0   000112222


Q ss_pred             EecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         824 IHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       824 ~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      ........+++++|.+++..++++...++
T Consensus       160 ~~~~~~~~v~~v~W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  160 VAPPLLSDVTDVAWSDDSTLVVLGRSAGG  188 (253)
T ss_pred             ecccccCcceeeeecCCCEEEEEeCCCCC
Confidence            23334568999999999996555555555

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.47  E-value=2.4  Score=48.06  Aligned_cols=168  Identities=12%  Similarity=0.124  Sum_probs=107.1

Q ss_pred             cceeeeEeeccCCcEEEEEe--CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVA--DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs--~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      .....+++++.++.+.++-.  .++++.+.|..+...   ......-..+ ..+++.|+|..++++-..++.        
T Consensus       116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~---~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~--------  183 (381)
T COG3391         116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV---TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNT--------  183 (381)
T ss_pred             cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE---EEEEecCCCc-ceEEECCCCCeEEEEecCCCe--------
Confidence            36678899986556666655  368888888877433   3332222233 889999999986666666676        


Q ss_pred             cccCCCcEEEEeCCCCCCCC-CeeeecCCCCCeEEEEEcCCCCcEEEEeeCC--CcEEEEeCCCCceeeEEeccCCCceE
Q psy4578         700 EENYDQKLMIWDTRSHNVSK-PSHTVDAHTAEVNCLSFNPYSEYILATGSAD--KTVALWDLRNLKLKLHSFESHKDEIF  776 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~-~~~~~~~h~~~I~sl~~sp~g~~llasgs~D--g~I~IWDl~~~~~~~~~~~~h~~~V~  776 (860)
                             +.+.|.......+ .......-...-..+.++|+|.++.++...+  +.+...|..++...............
T Consensus       184 -------v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~  256 (381)
T COG3391         184 -------VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPR  256 (381)
T ss_pred             -------EEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCC
Confidence                   8888866542211 0000111223446789999999766665554  68999998887752221222111566


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      .+..+|+|..+.+.-+..+.+.+-|..+....
T Consensus       257 ~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~  288 (381)
T COG3391         257 GVAVDPAGKAAYVANSQGGTVSVIDGATDRVV  288 (381)
T ss_pred             ceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence            78999999975444456688999998875443

>KOG2280|consensus

Probab=94.25  E-value=3.1  Score=49.37  Aligned_cols=183  Identities=13%  Similarity=0.157  Sum_probs=91.5

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEE
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  683 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ll  683 (860)
                      +.+.+..+..+..+...++.+..+.|+  +...|++...||+++||++-.......-.-.......|..+.+..+|-   
T Consensus        66 I~If~~sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV---  140 (829)
T KOG2280|consen   66 IRIFNISGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV---  140 (829)
T ss_pred             EEEEeccccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce---
Confidence            445566666677777777899999999  466677789999999999864321110000111223344444444442   


Q ss_pred             EEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCC--cEEEEee-CCCcEEEEeCCC
Q psy4578         684 ATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE--YILATGS-ADKTVALWDLRN  760 (860)
Q Consensus       684 asgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~--~llasgs-~Dg~I~IWDl~~  760 (860)
                      ++-..+|.+              +.+-+...... ..........-.-+|....+++.  .+++--. ..| ..++....
T Consensus       141 avlt~~g~v--------------~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~  204 (829)
T KOG2280|consen  141 AVLTVSGQV--------------ILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEE  204 (829)
T ss_pred             EEEecCCcE--------------EEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceec
Confidence            333334441              22222222110 11111111111213333223221  1111111 111 12233333


Q ss_pred             CceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         761 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       761 ~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      .......+....+.+..+..||++++ |+-=..+|.|.+-+.......
T Consensus       205 ~~~q~~~~~~~~~~~~ki~VS~n~~~-laLyt~~G~i~~vs~D~~~~l  251 (829)
T KOG2280|consen  205 SRVQLHALSWPNSSVVKISVSPNRRF-LALYTETGKIWVVSIDLSQIL  251 (829)
T ss_pred             ccccccccCCCCceEEEEEEcCCcce-EEEEecCCcEEEEecchhhhh
Confidence            32223333333467788999999986 778888999999887764443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.24  E-value=1.1  Score=47.44  Aligned_cols=169  Identities=8%  Similarity=0.155  Sum_probs=89.1

Q ss_pred             ccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCC-CCCeEEEEEcCCCC
Q psy4578         663 VDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAH-TAEVNCLSFNPYSE  741 (860)
Q Consensus       663 ~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h-~~~I~sl~~sp~g~  741 (860)
                      +.+-...+..++|+|+.+.++++....+.               |..++.. +   +.+..+.-. .+..-+|++..++.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~---------------i~els~~-G---~vlr~i~l~g~~D~EgI~y~g~~~   77 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGE---------------IYELSLD-G---KVLRRIPLDGFGDYEGITYLGNGR   77 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTE---------------EEEEETT------EEEEEE-SS-SSEEEEEE-STTE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCE---------------EEEEcCC-C---CEEEEEeCCCCCCceeEEEECCCE
Confidence            34445569999999998888999888887               6666653 3   223333211 35678899987776


Q ss_pred             cEEEEeeCCCcEEEEeCCCCce--ee---EEec-----cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578         742 YILATGSADKTVALWDLRNLKL--KL---HSFE-----SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       742 ~llasgs~Dg~I~IWDl~~~~~--~~---~~~~-----~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                      + +++.-.++.+.++++.....  ..   ..+.     .++..+-.++|+|.+..++ .+-...-..+|.++........
T Consensus        78 ~-vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~  155 (248)
T PF06977_consen   78 Y-VLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDL  155 (248)
T ss_dssp             E-EEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS--
T ss_pred             E-EEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCccce
Confidence            4 55555689999998843221  11   1111     2455789999999887655 4555555666666541100000


Q ss_pred             ccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         812 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       812 ~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      ...   ..............+.+++++|....+++-+..+..+.
T Consensus       156 ~~~---~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~  196 (248)
T PF06977_consen  156 FVS---DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLL  196 (248)
T ss_dssp             EEE---E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEE
T ss_pred             eec---cccccccccceeccccceEEcCCCCeEEEEECCCCeEE
Confidence            000   00000001223456888999998776777766666553

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4441|consensus

Probab=94.05  E-value=1.3  Score=52.84  Aligned_cols=201  Identities=13%  Similarity=0.154  Sum_probs=102.4

Q ss_pred             ceeeeeeecceee-cccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCc-----EEEEEcCCCCc
Q psy4578         583 KLFLNFFKQGYFK-GTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQK-----LMIWDTRSHNV  656 (860)
Q Consensus       583 ~l~~~ll~~G~~~-Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~-----I~IWd~~~~~~  656 (860)
                      .+...+.+.|.++ |......+... +....+-.....-...-........++.+.|+|+.||.     +-.||..+.+ 
T Consensus       330 ~~~~~lYv~GG~~~~~~~l~~ve~Y-D~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~-  407 (571)
T KOG4441|consen  330 VLNGKLYVVGGYDSGSDRLSSVERY-DPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK-  407 (571)
T ss_pred             EECCEEEEEccccCCCcccceEEEe-cCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc-
Confidence            3444566777777 55444444333 33333322222211222222222236889999999875     6677776532 


Q ss_pred             ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578         657 SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  736 (860)
Q Consensus       657 ~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~  736 (860)
                      +..+.....   ...+.....-+..+.++||.++.-         ..-..+..||..+... ..+..+..-........+
T Consensus       408 W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~---------~~l~sve~YDP~t~~W-~~~~~M~~~R~~~g~a~~  474 (571)
T KOG4441|consen  408 WTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSS---------NCLNSVECYDPETNTW-TLIAPMNTRRSGFGVAVL  474 (571)
T ss_pred             ccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCc---------cccceEEEEcCCCCce-eecCCcccccccceEEEE
Confidence            222222222   223333333344688999888761         0224588888887642 333232222222222222


Q ss_pred             cCCCCcEEEEeeCCCc-----EEEEeCCCCceeeEE-eccCCCceEEEEEcCCCCCEEEEEECCC-----cEEEEECCC
Q psy4578         737 NPYSEYILATGSADKT-----VALWDLRNLKLKLHS-FESHKDEIFQVQWSPHNETILASSGTDR-----RLHVWDLSK  804 (860)
Q Consensus       737 sp~g~~llasgs~Dg~-----I~IWDl~~~~~~~~~-~~~h~~~V~~l~fsp~g~~lL~tgs~Dg-----~I~iWdl~~  804 (860)
                        ++ .+++.|+.|+.     |..||..+.+..... +......+..+   ..+..+.+.||.||     +|..||..+
T Consensus       475 --~~-~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~---~~~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  475 --NG-KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV---VLGGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             --CC-EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE---EECCEEEEEecccCccccceeEEcCCCC
Confidence              23 47889988873     778998887762221 22222222222   22344688888775     556666555

>KOG2079|consensus

Probab=93.93  E-value=0.28  Score=59.66  Aligned_cols=101  Identities=19%  Similarity=0.306  Sum_probs=70.0

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR  713 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~  713 (860)
                      +..++.|+..|.+...|+...  ..+...-..-.++|++++|+.+|. +++.|-.+|.               |.+||+.
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~---------------V~v~D~~  160 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGH---------------VTVWDMH  160 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc-eeccccCCCc---------------EEEEEcc
Confidence            456888999999999998753  222222233468999999999998 5888888888               9999999


Q ss_pred             CCCCCCCeeeecCCCCCeEE---EEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578         714 SHNVSKPSHTVDAHTAEVNC---LSFNPYSEYILATGSADKTVALWDL  758 (860)
Q Consensus       714 ~~~~~~~~~~~~~h~~~I~s---l~~sp~g~~llasgs~Dg~I~IWDl  758 (860)
                      .+   +.+..+..|..+.++   +.|..++. .+.++...|.  +|.+
T Consensus       161 ~~---k~l~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  161 RA---KILKVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CC---cceeeeeecCCccceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence            87   444455445444443   44455555 5778877776  5544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.88  E-value=1.9  Score=45.74  Aligned_cols=165  Identities=12%  Similarity=0.207  Sum_probs=93.5

Q ss_pred             cCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee--cCCCCCeEEEEEcCCCC
Q psy4578         664 DAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV--DAHTAEVNCLSFNPYSE  741 (860)
Q Consensus       664 ~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~--~~h~~~I~sl~~sp~g~  741 (860)
                      .+....+.++.|+|+.+.+++++...-.               | +|=...+   ..+.++  .+ -...-.+.|.-+|.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~---------------i-VElt~~G---dlirtiPL~g-~~DpE~Ieyig~n~  141 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAA---------------I-VELTKEG---DLIRTIPLTG-FSDPETIEYIGGNQ  141 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCce---------------E-EEEecCC---ceEEEecccc-cCChhHeEEecCCE
Confidence            3445569999999999988877766554               2 3322223   222222  22 22335678887777


Q ss_pred             cEEEEeeCCCcEEEEeCCCCce---------eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccc
Q psy4578         742 YILATGSADKTVALWDLRNLKL---------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  812 (860)
Q Consensus       742 ~llasgs~Dg~I~IWDl~~~~~---------~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~  812 (860)
                      + .++--.++.+.++.+.....         ++......+...-.++|+|.... |..+-.-.-+.||.+..........
T Consensus       142 f-vi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~-l~~aKEr~P~~I~~~~~~~~~l~~~  219 (316)
T COG3204         142 F-VIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR-LFVAKERNPIGIFEVTQSPSSLSVH  219 (316)
T ss_pred             E-EEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCce-EEEEEccCCcEEEEEecCCcccccc
Confidence            4 66667788888887765532         11111222556788999998876 5566666667777666322111110


Q ss_pred             cccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       813 ~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      ..  ..+.  ....-.-..|+++.|++....+++-+.+++.+
T Consensus       220 ~~--~~~~--~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l  257 (316)
T COG3204         220 AS--LDPT--ADRDLFVLDVSGLEFNAITNSLLVLSDESRRL  257 (316)
T ss_pred             cc--cCcc--cccceEeeccccceecCCCCcEEEEecCCceE
Confidence            00  0000  00001123577888887666677666666554

>KOG4649|consensus

Probab=93.66  E-value=3.5  Score=42.92  Aligned_cols=115  Identities=12%  Similarity=0.143  Sum_probs=72.1

Q ss_pred             EEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc
Q psy4578         673 LSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  752 (860)
Q Consensus       673 l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~  752 (860)
                      +...++...+++.|+..+.               +.-.|..+++.   ... .--...|-+-+.- -|++ ++.|...|.
T Consensus        16 LVV~~dskT~v~igSHs~~---------------~~avd~~sG~~---~We-~ilg~RiE~sa~v-vgdf-VV~GCy~g~   74 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSHSGI---------------VIAVDPQSGNL---IWE-AILGVRIECSAIV-VGDF-VVLGCYSGG   74 (354)
T ss_pred             EEEecCCceEEEEecCCce---------------EEEecCCCCcE---Eee-hhhCceeeeeeEE-ECCE-EEEEEccCc
Confidence            3444566667888887776               66666666531   111 0012223222222 3664 889999999


Q ss_pred             EEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc
Q psy4578         753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  810 (860)
Q Consensus       753 I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~  810 (860)
                      +++-+..++.. ...+.....--......+++. ++..|+.|++.+..|.++..+..+
T Consensus        75 lYfl~~~tGs~-~w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~cVyk  130 (354)
T KOG4649|consen   75 LYFLCVKTGSQ-IWNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYK  130 (354)
T ss_pred             EEEEEecchhh-eeeeeehhhhccceEEcCCCc-eEEEecCCCcEEEecccccceEEe
Confidence            99999999965 444443222222344566776 689999999999999998665543

>KOG4649|consensus

Probab=93.30  E-value=12  Score=39.14  Aligned_cols=147  Identities=10%  Similarity=0.040  Sum_probs=88.9

Q ss_pred             eccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEE
Q psy4578         630 HLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMI  709 (860)
Q Consensus       630 sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~i  709 (860)
                      .++...+++.|+..|.+.--|..+++..  -...  -...+.+-+.- -|++ ++.|...|.               +++
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~sG~~~--We~i--lg~RiE~sa~v-vgdf-VV~GCy~g~---------------lYf   77 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQSGNLI--WEAI--LGVRIECSAIV-VGDF-VVLGCYSGG---------------LYF   77 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCCCcEE--eehh--hCceeeeeeEE-ECCE-EEEEEccCc---------------EEE
Confidence            3445678889999999999998886431  1111  12333333322 2554 788888887               888


Q ss_pred             EeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC-CCCCEE
Q psy4578         710 WDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP-HNETIL  788 (860)
Q Consensus       710 wDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp-~g~~lL  788 (860)
                      .+.+++.   ....+..-..-=......+++. ++..|+.|+..+.-|.++... +...+...+...+-+..| ++.  |
T Consensus        78 l~~~tGs---~~w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~c-VykskcgG~~f~sP~i~~g~~s--l  150 (354)
T KOG4649|consen   78 LCVKTGS---QIWNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYGC-VYKSKCGGGTFVSPVIAPGDGS--L  150 (354)
T ss_pred             EEecchh---heeeeeehhhhccceEEcCCCc-eEEEecCCCcEEEecccccce-EEecccCCceeccceecCCCce--E
Confidence            8888873   3333322211112344567777 689999999999999998877 666554444444455556 343  4


Q ss_pred             EEEECCCcEEEEECCC
Q psy4578         789 ASSGTDRRLHVWDLSK  804 (860)
Q Consensus       789 ~tgs~Dg~I~iWdl~~  804 (860)
                      ..+...|.+.--..+.
T Consensus       151 y~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  151 YAAITAGAVLAVTKNP  166 (354)
T ss_pred             EEEeccceEEEEccCC
Confidence            4455555554444333

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.30  E-value=2.9  Score=50.02  Aligned_cols=152  Identities=7%  Similarity=0.037  Sum_probs=78.8

Q ss_pred             CCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEE
Q psy4578         667 TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT  746 (860)
Q Consensus       667 ~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llas  746 (860)
                      ...+.+.+.+|+|+.++++...-        +........+.+++....  ...+  ..+  ...+.-.|+|+|.. +++
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~--------~~~~d~~s~Lwv~~~gg~--~~~l--t~g--~~~t~PsWspDG~~-lw~  413 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLG--------RGAPDPASSLWVGPLGGV--AVQV--LEG--HSLTRPSWSLDADA-VWV  413 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeec--------CCCCCcceEEEEEeCCCc--ceee--ecC--CCCCCceECCCCCc-eEE
Confidence            34678999999999865555310        000011223555564221  1222  222  23788899999886 444


Q ss_pred             eeCC------------CcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc-cccccc
Q psy4578         747 GSAD------------KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE-EQSTED  813 (860)
Q Consensus       747 gs~D------------g~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~-~~~~~~  813 (860)
                      .+..            +.+.+.+++.+..  ..  ...+.|..+.|||||..+.+..  +|.|.+=-+..... ....  
T Consensus       414 v~dg~~~~~v~~~~~~gql~~~~vd~ge~--~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l--  485 (591)
T PRK13616        414 VVDGNTVVRVIRDPATGQLARTPVDASAV--AS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYAL--  485 (591)
T ss_pred             EecCcceEEEeccCCCceEEEEeccCchh--hh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceee--
Confidence            4322            2333334443332  11  2356799999999999855544  46777632222100 0000  


Q ss_pred             ccCCCCccEEEecCccCceEEEEEccCCCeEEEE
Q psy4578         814 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS  847 (860)
Q Consensus       814 ~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llas  847 (860)
                           ..+.....+-...+.++.|..++. |++.
T Consensus       486 -----~~~~~l~~~l~~~~~~l~W~~~~~-L~V~  513 (591)
T PRK13616        486 -----TNPREVGPGLGDTAVSLDWRTGDS-LVVG  513 (591)
T ss_pred             -----cccEEeecccCCccccceEecCCE-EEEE
Confidence                 011111122334468899999998 4433

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=93.28  E-value=1.4  Score=49.98  Aligned_cols=131  Identities=17%  Similarity=0.214  Sum_probs=80.9

Q ss_pred             CeeEEEEccCCCeEEEEEeCCCceeeecccccccCC-------------------CcEEEEeCCCCCC------CCCeee
Q psy4578         669 EVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYD-------------------QKLMIWDTRSHNV------SKPSHT  723 (860)
Q Consensus       669 ~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~d-------------------g~I~iwDl~~~~~------~~~~~~  723 (860)
                      .|+.+.|+++... +++|...|.+.+++........                   +.-.+-|+.....      ..+...
T Consensus         3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            5889999998774 8999999998888766542211                   1233455543211      123344


Q ss_pred             ecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE--ecc------CCCceEEEEEcC-----CC--CCEE
Q psy4578         724 VDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS--FES------HKDEIFQVQWSP-----HN--ETIL  788 (860)
Q Consensus       724 ~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~--~~~------h~~~V~~l~fsp-----~g--~~lL  788 (860)
                      +....+.|++++.|.-|  ++|.|..+|.+.|.|+|.... +..  +..      ....++++.|+.     |+  .-.+
T Consensus        82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPav-I~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAV-IYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEE-EEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeE-EeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            55568999999998655  599999999999999998876 333  112      234688888872     22  1257


Q ss_pred             EEEECCCcEEEEECC
Q psy4578         789 ASSGTDRRLHVWDLS  803 (860)
Q Consensus       789 ~tgs~Dg~I~iWdl~  803 (860)
                      ++|+..|.+.+|.+.
T Consensus       159 ~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  159 LVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEETTSEEEEEEEE
T ss_pred             EEEeCCCCEEEEEEe
Confidence            788899999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.23  E-value=1.6  Score=50.40  Aligned_cols=128  Identities=8%  Similarity=0.220  Sum_probs=76.1

Q ss_pred             hhhhhcccceeeeEeeccC----CcEEEEEeCCCcEEEEEcCC--CCcccCeeeccCC---CC--CeeEEEEccCCCeEE
Q psy4578         615 CQLLDKLRLLIDVAWHLLH----ESLFGSVADDQKLMIWDTRS--HNVSKPSHTVDAH---TA--EVNCLSFNPYSEYIL  683 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~----~~~lasgs~DG~I~IWd~~~--~~~~~~~~~~~~h---~~--~V~~l~~sp~g~~ll  683 (860)
                      ....+.+..|.+++|.|.+    ..+|| ......|.||.+.-  .+..+.+.....+   ..  --..+.|+|...-+.
T Consensus        50 s~viGqFEhV~GlsW~P~~~~~~paLLA-VQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~  128 (671)
T PF15390_consen   50 SKVIGQFEHVHGLSWAPPCTADTPALLA-VQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILT  128 (671)
T ss_pred             ccEeeccceeeeeeecCcccCCCCceEE-EeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEE
Confidence            4456778889999999852    23454 45567999999862  1222222221111   11  235688999888433


Q ss_pred             EEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCC
Q psy4578         684 ATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL  761 (860)
Q Consensus       684 asgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~  761 (860)
                      +-...|-+                .+++++.... +....+ ...+.|.|.+|.+||..++++-+..=.-+|||-...
T Consensus       129 VLT~~dvS----------------V~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  129 VLTARDVS----------------VLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EEecCcee----------------EeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            33344433                2445544321 222223 346789999999999986665555555778986544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.20  E-value=19  Score=41.10  Aligned_cols=201  Identities=10%  Similarity=0.140  Sum_probs=97.5

Q ss_pred             eeeecceeecccceeEEEEeeccchhhhhh-hhhcccceeeeEeeccCCcEEEEEeCC----------CcEEEEEcCCCC
Q psy4578         587 NFFKQGYFKGTHHIEEVMYLENKTRAQICQ-LLDKLRLLIDVAWHLLHESLFGSVADD----------QKLMIWDTRSHN  655 (860)
Q Consensus       587 ~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~-l~~~~~~V~~v~~sp~~~~~lasgs~D----------G~I~IWd~~~~~  655 (860)
                      +.++.+.-.|+.+.. .+++.+...++... .+.. ..-..+.|.+++..++.+...+          ..|..|.+.++.
T Consensus       136 ~~la~~~s~~G~e~~-~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~  213 (414)
T PF02897_consen  136 KRLAYSLSDGGSEWY-TLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ  213 (414)
T ss_dssp             SEEEEEEEETTSSEE-EEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G
T ss_pred             CEEEEEecCCCCceE-EEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh
Confidence            344334333433333 45555555554332 1111 1222399998545555555333          237777776643


Q ss_pred             cccCeeeccCCCCC--eeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCC-CCCCeeeecCCCCCeE
Q psy4578         656 VSKPSHTVDAHTAE--VNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHN-VSKPSHTVDAHTAEVN  732 (860)
Q Consensus       656 ~~~~~~~~~~h~~~--V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~-~~~~~~~~~~h~~~I~  732 (860)
                      . .-...+......  ...+..+++++++++......+            ...+.+.|..... .......+......+.
T Consensus       214 ~-~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~------------~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  214 S-EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS------------ESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             G-G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS------------EEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             H-hCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc------------CCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence            2 112233332222  5688899999986665543321            2347777877630 0122333333333443


Q ss_pred             -EEEEcCCCCcEEEEe--eCCCcEEEEeCCCCce--eeEEeccCCCceEEEEEcCCCCCEEEEEECCC--cEEEEECC
Q psy4578         733 -CLSFNPYSEYILATG--SADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSPHNETILASSGTDR--RLHVWDLS  803 (860)
Q Consensus       733 -sl~~sp~g~~llasg--s~Dg~I~IWDl~~~~~--~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg--~I~iWdl~  803 (860)
                       .+... .+.+++.|.  ..++.|.-.++.....  ....+..+...+.-..+...+.++++..-.++  .|+++++.
T Consensus       281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence             34333 444323332  2346777788877652  12244555554333444445666677776665  57788887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=93.02  E-value=3.4  Score=45.47  Aligned_cols=156  Identities=16%  Similarity=0.173  Sum_probs=84.7

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      ....++|++++-.  ++. +++|. ++.|.+|++............. ....++++...  +++ +++|+....      
T Consensus        85 ~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~--~~~-I~vgD~~~s------  150 (321)
T PF03178_consen   85 TEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVF--KNY-ILVGDAMKS------  150 (321)
T ss_dssp             EEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEE--TTE-EEEEESSSS------
T ss_pred             EeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheec-ceEEEEEEecc--ccE-EEEEEcccC------
Confidence            3446789998877  355 44433 4799999998754112222221 23356666665  554 667766555      


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCeeee--cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCC---------cee-e
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSHTV--DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL---------KLK-L  765 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~--~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~---------~~~-~  765 (860)
                               +.++..+...  ..+..+  ......++++.+-+++. .++++..+|.+.++.....         ... .
T Consensus       151 ---------v~~~~~~~~~--~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~  218 (321)
T PF03178_consen  151 ---------VSLLRYDEEN--NKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERI  218 (321)
T ss_dssp             ---------EEEEEEETTT--E-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEE
T ss_pred             ---------EEEEEEEccC--CEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeE
Confidence                     5655433211  112222  22355688888887776 5889999999999987631         111 1


Q ss_pred             EEeccCCCceEEE---EEcCC--CCC-----EEEEEECCCcEEEE
Q psy4578         766 HSFESHKDEIFQV---QWSPH--NET-----ILASSGTDRRLHVW  800 (860)
Q Consensus       766 ~~~~~h~~~V~~l---~fsp~--g~~-----lL~tgs~Dg~I~iW  800 (860)
                      ..+. ....|+++   ++.|.  +..     .++.++.+|.|...
T Consensus       219 ~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  219 SSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            2222 34567777   55552  221     36788889998844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PHA02713 hypothetical protein; Provisional

Probab=93.02  E-value=1.1  Score=53.35  Aligned_cols=163  Identities=10%  Similarity=0.114  Sum_probs=80.2

Q ss_pred             CCcEEEEEeCCC-----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee------ecc--cc
Q psy4578         633 HESLFGSVADDQ-----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE------VEE--EE  699 (860)
Q Consensus       633 ~~~~lasgs~DG-----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~------~~~--~~  699 (860)
                      ++.+.+.||.+|     ++..||..++. +..+..+.........+..   +..+.+.||.++....      +..  ..
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~-W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDK-WKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCe-EEECCCCCcccccccEEEE---CCEEEEEeCCCcccccccccccccccccc
Confidence            578888888764     37788887642 2222222111111222222   3457888876643100      000  00


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC------CcEEEEeCCC-Ccee-eEEeccC
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD------KTVALWDLRN-LKLK-LHSFESH  771 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D------g~I~IWDl~~-~~~~-~~~~~~h  771 (860)
                      .......+..||..+... ..+..+.........+.+  +|. +.+.|+.+      ..+..||..+ .+.. +..+...
T Consensus       427 ~~~~~~~ve~YDP~td~W-~~v~~m~~~r~~~~~~~~--~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~  502 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNIW-ETLPNFWTGTIRPGVVSH--KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR  502 (557)
T ss_pred             cccccceEEEECCCCCeE-eecCCCCcccccCcEEEE--CCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence            001124588888887532 222222211111112222  344 67777754      2467899887 4541 2223222


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCC--cEEEEECCCCC
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDR--RLHVWDLSKIG  806 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg--~I~iWdl~~~~  806 (860)
                      ......+.+  +| .+.++||.||  ++..||..+.+
T Consensus       503 r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        503 LSALHTILH--DN-TIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             cccceeEEE--CC-EEEEEeeecceeehhhcCccccc
Confidence            222323333  34 4789999888  67778877643

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.98  E-value=15  Score=39.26  Aligned_cols=183  Identities=13%  Similarity=0.109  Sum_probs=105.7

Q ss_pred             cccceeEEEEeeccc---hhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeE
Q psy4578         596 GTHHIEEVMYLENKT---RAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNC  672 (860)
Q Consensus       596 Gs~~l~~il~l~n~~---~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~  672 (860)
                      |.+..-.+.-.|+..   ...+.......+-+.++.++   +++...+..+.-++|.|+.+......+..+.. .+--.+
T Consensus        58 ~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyayg  133 (370)
T COG5276          58 GQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYG  133 (370)
T ss_pred             ccCceEeeccccCcccccCcceEEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEE
Confidence            333334444444443   22233334445667788887   45666677778899999998755444433322 233344


Q ss_pred             EEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc
Q psy4578         673 LSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  752 (860)
Q Consensus       673 l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~  752 (860)
                      +..  .|++..++.-.||                +-+.|+.+...................++.|  |++ ...+..|+-
T Consensus       134 v~v--sGn~aYVadlddg----------------fLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~-AYvA~~d~G  192 (370)
T COG5276         134 VYV--SGNYAYVADLDDG----------------FLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNY-AYVAWRDGG  192 (370)
T ss_pred             EEe--cCCEEEEeeccCc----------------EEEEECCCCCCceeeeeeccCCCCceeEEEe--cCe-EEEEEeCCC
Confidence            444  4777444444566                6788998876544444444444444566666  554 556678999


Q ss_pred             EEEEeCCCCceeeEEecc-CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         753 VALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       753 I~IWDl~~~~~~~~~~~~-h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      +.|-|+.+...+...-.- ....+.++..+++..+ + +-. +--+.+-|....+
T Consensus       193 L~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y-~-vvy-~egvlivd~s~~s  244 (370)
T COG5276         193 LTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAY-L-VVY-DEGVLIVDVSGPS  244 (370)
T ss_pred             eEEEEccCCCCCeEEEEEecCCceEEEEecCCeeE-E-EEc-ccceEEEecCCCC
Confidence            999999987764432222 2236788877776643 2 332 3335555555543

>KOG3630|consensus

Probab=92.95  E-value=1.2  Score=54.88  Aligned_cols=156  Identities=12%  Similarity=0.141  Sum_probs=95.2

Q ss_pred             CeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCC-----Cee---eecCCCCCeEEEEEcCCC
Q psy4578         669 EVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSK-----PSH---TVDAHTAEVNCLSFNPYS  740 (860)
Q Consensus       669 ~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~-----~~~---~~~~h~~~I~sl~~sp~g  740 (860)
                      ++..+...+|+....++-+.+|.              .|..||+++-....     ++.   +.........++.|+|.-
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~--------------~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v  167 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGE--------------AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV  167 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCc--------------eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc
Confidence            45555556665543444433343              38889987642111     111   111223445789999976


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCc
Q psy4578         741 EYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE  820 (860)
Q Consensus       741 ~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~  820 (860)
                      ....+.+..|+.|++..+......+..+. ....+++++|+|.|.. ++.|-..|++.-|...- +....+..      .
T Consensus       168 p~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQ-l~iG~nnGt~vQy~P~l-eik~~ip~------P  238 (1405)
T KOG3630|consen  168 PLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQ-LFIGRNNGTEVQYEPSL-EIKSEIPE------P  238 (1405)
T ss_pred             cchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccce-eeEecCCCeEEEeeccc-ceeecccC------C
Confidence            65577888999999988765544233332 4567899999999997 88898999998886543 21111110      1


Q ss_pred             cEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578         821 LLFIHGGHTAKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       821 ~i~~~~~h~~~I~~i~~spdg~~Llasgs~D  851 (860)
                      +.    .....|.+++|-....++++-+..+
T Consensus       239 p~----~e~yrvl~v~Wl~t~eflvvy~n~t  265 (1405)
T KOG3630|consen  239 PV----EENYRVLSVTWLSTQEFLVVYGNVT  265 (1405)
T ss_pred             Cc----CCCcceeEEEEecceeEEEEecccc
Confidence            11    1146799999998888766554433

>KOG2079|consensus

Probab=92.82  E-value=0.26  Score=59.96  Aligned_cols=65  Identities=20%  Similarity=0.264  Sum_probs=51.7

Q ss_pred             EEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         743 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       743 llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      .++.|+..|.+...|.++.-.+...-....++|++++|+.+|.. ++.|-.+|.|.+||+.+++..
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~-l~~G~~~G~V~v~D~~~~k~l  165 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSL-LLAGLGDGHVTVWDMHRAKIL  165 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCce-eccccCCCcEEEEEccCCcce
Confidence            37888889999999988754434444455789999999999984 778889999999999985543

>PHA02713 hypothetical protein; Provisional

Probab=92.30  E-value=4.4  Score=48.38  Aligned_cols=151  Identities=11%  Similarity=0.089  Sum_probs=71.1

Q ss_pred             CCcEEEEEeCC------CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCc
Q psy4578         633 HESLFGSVADD------QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQK  706 (860)
Q Consensus       633 ~~~~lasgs~D------G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~  706 (860)
                      ++.+++.||.+      ..+..||..++. +..+..+.........+.+   +..+.+.||.++.          .....
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~-W~~~~~m~~~R~~~~~~~~---~g~IYviGG~~~~----------~~~~s  368 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKI-HVELPPMIKNRCRFSLAVI---DDTIYAIGGQNGT----------NVERT  368 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCe-EeeCCCCcchhhceeEEEE---CCEEEEECCcCCC----------CCCce
Confidence            56777888754      236677876532 1222221111111222222   3347777876653          11234


Q ss_pred             EEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC-----------------------cEEEEeCCCCce
Q psy4578         707 LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK-----------------------TVALWDLRNLKL  763 (860)
Q Consensus       707 I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg-----------------------~I~IWDl~~~~~  763 (860)
                      +..||..+... ..+..+.........+..  +|. +.+.|+.++                       ++..||..+...
T Consensus       369 ve~Ydp~~~~W-~~~~~mp~~r~~~~~~~~--~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W  444 (557)
T PHA02713        369 IECYTMGDDKW-KMLPDMPIALSSYGMCVL--DQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW  444 (557)
T ss_pred             EEEEECCCCeE-EECCCCCcccccccEEEE--CCE-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE
Confidence            88899876532 222222211112222222  344 677777653                       477888877654


Q ss_pred             e-eEEeccCCCceEEEEEcCCCCCEEEEEECCC------cEEEEECCC
Q psy4578         764 K-LHSFESHKDEIFQVQWSPHNETILASSGTDR------RLHVWDLSK  804 (860)
Q Consensus       764 ~-~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg------~I~iWdl~~  804 (860)
                      . +..+....... +++ .-+|. +.+.||.++      .+..||..+
T Consensus       445 ~~v~~m~~~r~~~-~~~-~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        445 ETLPNFWTGTIRP-GVV-SHKDD-IYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             eecCCCCcccccC-cEE-EECCE-EEEEeCCCCCCccceeEEEecCCC
Confidence            1 11111111111 122 22344 567777542      356788776

>KOG2444|consensus

Probab=92.22  E-value=0.33  Score=49.49  Aligned_cols=144  Identities=17%  Similarity=0.194  Sum_probs=76.1

Q ss_pred             EEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCC
Q psy4578         637 FGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHN  716 (860)
Q Consensus       637 lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~  716 (860)
                      +...+.||.|+-++++.....  .+....+......+.+   +. -+++|+.+|.               |.+|......
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s--~rse~~~~e~~~v~~~---~~-~~~vG~~dg~---------------v~~~n~n~~g   91 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKES--CRSERFIDEGQRVVTA---SA-KLMVGTSDGA---------------VYVFNWNLEG   91 (238)
T ss_pred             hccccCCcccccchhhhhhhh--hhhhhhhhcceeeccc---Cc-eEEeecccce---------------EEEecCCccc
Confidence            444567788888877642211  1111112222222222   33 4888888888               7777665211


Q ss_pred             CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC-CceEEEEEcCCCCCEEEEE--EC
Q psy4578         717 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK-DEIFQVQWSPHNETILASS--GT  793 (860)
Q Consensus       717 ~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~-~~V~~l~fsp~g~~lL~tg--s~  793 (860)
                        .....+..-...|.++--.-+...+.++++.||.|+.|++.-.+. +.....|. ..+.....+..+++ ++.+  |.
T Consensus        92 --~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~~e~~ivv~sd~~-i~~a~~S~  167 (238)
T KOG2444|consen   92 --AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFESGEELIVVGSDEF-LKIADTSH  167 (238)
T ss_pred             --hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce-eeeeccccCCCcceeEEecCCce-EEeecccc
Confidence              100011111222333222222222688999999999999987765 44444455 44555555555553 5555  66


Q ss_pred             CCcEEEEECCCC
Q psy4578         794 DRRLHVWDLSKI  805 (860)
Q Consensus       794 Dg~I~iWdl~~~  805 (860)
                      |..++.|++...
T Consensus       168 d~~~k~W~ve~~  179 (238)
T KOG2444|consen  168 DRVLKKWNVEKI  179 (238)
T ss_pred             chhhhhcchhhh
Confidence            777777776653

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.16  E-value=1.4  Score=52.23  Aligned_cols=108  Identities=17%  Similarity=0.265  Sum_probs=65.9

Q ss_pred             CCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEc--CCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         729 AEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS--PHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       729 ~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fs--p~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      ...+-+.-+.-++ +.++.+....+.|||.+.+.......-...+.|.++.|.  |+|.. +++.|..+.|.++.-....
T Consensus        30 ~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qs-iLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   30 SNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQS-ILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCE-EEEEEcCcEEEEEEccchh
Confidence            3444555555555 344444456799999998875222222457889999995  68886 6677788899998654322


Q ss_pred             cccccccccCCCCccEE--EecCcc-CceEEEEEccCCCe
Q psy4578         807 EEQSTEDAEDGPPELLF--IHGGHT-AKISDFSWNPNEPW  843 (860)
Q Consensus       807 ~~~~~~~~~~~~~~~i~--~~~~h~-~~I~~i~~spdg~~  843 (860)
                      ......     ....+.  ....|+ .+|.+.+|.++|..
T Consensus       108 y~~~~p-----~w~~i~~i~i~~~T~h~Igds~Wl~~G~L  142 (631)
T PF12234_consen  108 YTNKGP-----SWAPIRKIDISSHTPHPIGDSIWLKDGTL  142 (631)
T ss_pred             hhcCCc-----ccceeEEEEeecCCCCCccceeEecCCeE
Confidence            211111     111222  223444 58999999999983

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.13  E-value=21  Score=38.96  Aligned_cols=116  Identities=15%  Similarity=0.195  Sum_probs=58.3

Q ss_pred             CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578         726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       726 ~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~  805 (860)
                      .-.+.+..+.-+++|.+ +++++.-....-||--.... ...-......|.++.|.|++.  |...+..|.|++=+....
T Consensus       142 ~~~gs~~~~~r~~dG~~-vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~--lw~~~~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRY-VAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGN--LWMLARGGQIQFSDDPDD  217 (302)
T ss_dssp             S----EEEEEE-TTS-E-EEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS---EEEEETTTEEEEEE-TTE
T ss_pred             CCcceeEeEEECCCCcE-EEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCC--EEEEeCCcEEEEccCCCC
Confidence            34577888999999995 66666555556787654333 222233567899999999986  444558888888772211


Q ss_pred             CcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       806 ~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      ..  .+.       ..+.....-.-.+.+++|.+++. +.++|+.+..++
T Consensus       218 ~~--~w~-------~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg~G~l~~  257 (302)
T PF14870_consen  218 GE--TWS-------EPIIPIKTNGYGILDLAYRPPNE-IWAVGGSGTLLV  257 (302)
T ss_dssp             EE--EE----------B-TTSS--S-EEEEEESSSS--EEEEESTT-EEE
T ss_pred             cc--ccc-------cccCCcccCceeeEEEEecCCCC-EEEEeCCccEEE
Confidence            00  000       00011111223489999999877 566666655443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=91.91  E-value=0.49  Score=36.10  Aligned_cols=32  Identities=28%  Similarity=0.605  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578         728 TAEVNCLSFNPYSEYILATGSADKTVALWDLRN  760 (860)
Q Consensus       728 ~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~  760 (860)
                      ...|.+++|+|... ++|.|+.+|.|.+|.++.
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEECCC
Confidence            45699999999999 799999999999999843

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=91.89  E-value=4  Score=45.52  Aligned_cols=173  Identities=13%  Similarity=0.142  Sum_probs=82.8

Q ss_pred             chhhhhhhhhcccceeeeEeeccCCcEEEEEeC---CC-cEEEEEcCCCCcccCeeeccCC--CCCeeEEEEccCCCeEE
Q psy4578         610 TRAQICQLLDKLRLLIDVAWHLLHESLFGSVAD---DQ-KLMIWDTRSHNVSKPSHTVDAH--TAEVNCLSFNPYSEYIL  683 (860)
Q Consensus       610 ~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~---DG-~I~IWd~~~~~~~~~~~~~~~h--~~~V~~l~~sp~g~~ll  683 (860)
                      ..++...++....-+.-+.|+|.+..+++-|-.   +. .-|||-+.+..  .....+..+  ...+..=-|.|+|..+.
T Consensus       176 ~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg--~~~~~v~~~~~~e~~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  176 KTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG--SNVKKVHRRMEGESVGHEFWVPDGSTIW  253 (386)
T ss_dssp             TT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EE
T ss_pred             CCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC--CcceeeecCCCCcccccccccCCCCEEE
Confidence            344444455555567788899988888877653   33 24778776432  112222222  23445556889998766


Q ss_pred             EEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC------------
Q psy4578         684 ATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK------------  751 (860)
Q Consensus       684 asgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg------------  751 (860)
                      ..+...|.           .+..|.-+|..+++. ..+..    ......+--+++|. +++.=+.|.            
T Consensus       254 y~~~~~~~-----------~~~~i~~~d~~t~~~-~~~~~----~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~  316 (386)
T PF14583_consen  254 YDSYTPGG-----------QDFWIAGYDPDTGER-RRLME----MPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKI  316 (386)
T ss_dssp             EEEEETTT-------------EEEEEE-TTT--E-EEEEE----E-SEEEEEE-TTSS-EEEEEE---------------
T ss_pred             EEeecCCC-----------CceEEEeeCCCCCCc-eEEEe----CCceeeeEEcCCCC-EEEecCCCCCcccccccccee
Confidence            65542221           122366667776522 11111    12344556678888 343322221            


Q ss_pred             ----cEEEEeCCCCceeeEEeccCC----------C-ceEEEEEcCCCCCEEEEEECCCcEEEEECC
Q psy4578         752 ----TVALWDLRNLKLKLHSFESHK----------D-EIFQVQWSPHNETILASSGTDRRLHVWDLS  803 (860)
Q Consensus       752 ----~I~IWDl~~~~~~~~~~~~h~----------~-~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~  803 (860)
                          .|+++++..+..  ..+..|.          . .=-...|+|||+++|.++...|...||=+.
T Consensus       317 ~~~p~i~~~~~~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  317 ENDPWIYLFDVEAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             ----EEEEEETTTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             cCCcEEEEeccccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence                456677776553  1111121          1 124578999999999999988887777543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.45  E-value=20  Score=43.88  Aligned_cols=90  Identities=18%  Similarity=0.240  Sum_probs=52.9

Q ss_pred             CCCeeEEEEccCCCeEEEEEeCCCc-eeeecccc--cc-cCCC----cEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC
Q psy4578         667 TAEVNCLSFNPYSEYILATGSADKT-QFEVEEEE--EE-NYDQ----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  738 (860)
Q Consensus       667 ~~~V~~l~~sp~g~~llasgs~Dg~-i~~~~~~~--~~-~~dg----~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp  738 (860)
                      ...|..|..+|+|..+.++| ..|. |.......  .+ ..+|    .++.+.+..     .+. ...+...|..+.|||
T Consensus        84 ~f~v~~i~~n~~g~~lal~G-~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~-----~~~-~~~~~~~i~qv~WhP  156 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVG-PRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDE-----RFF-TSNSSLEIKQVRWHP  156 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEc-CCcEEEEEeccccCccccccCCCcceeEEEEEech-----hhc-cCCCCceEEEEEEcC
Confidence            45789999999999755555 4553 22221111  11 1111    223333321     111 123567899999999


Q ss_pred             CC---CcEEEEeeCCCcEEEEeCCCCcee
Q psy4578         739 YS---EYILATGSADKTVALWDLRNLKLK  764 (860)
Q Consensus       739 ~g---~~llasgs~Dg~I~IWDl~~~~~~  764 (860)
                      .+   .+ |+.=..|+++|+||+.....+
T Consensus       157 ~s~~~~~-l~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  157 WSESDSH-LVVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             CCCCCCe-EEEEecCCEEEEEecCCCCCC
Confidence            74   55 667778999999999765543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.26  E-value=2.6  Score=47.41  Aligned_cols=209  Identities=10%  Similarity=0.081  Sum_probs=88.7

Q ss_pred             CCcEEEEEeC------CCcEEEEEcCCCCcccCeeecc---CCCCCeeEEEEccCCCeEEEEEeCCCceeee---c--cc
Q psy4578         633 HESLFGSVAD------DQKLMIWDTRSHNVSKPSHTVD---AHTAEVNCLSFNPYSEYILATGSADKTQFEV---E--EE  698 (860)
Q Consensus       633 ~~~~lasgs~------DG~I~IWd~~~~~~~~~~~~~~---~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~---~--~~  698 (860)
                      ++.+++|+-.      -|-+.+.|-++-+   ......   +....-.++-|.|..+ +++|.....--.+-   .  ..
T Consensus       140 ~G~imIS~lGd~~G~g~Ggf~llD~~tf~---v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~  215 (461)
T PF05694_consen  140 DGRIMISALGDADGNGPGGFVLLDGETFE---VKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDL  215 (461)
T ss_dssp             S--EEEEEEEETTS-S--EEEEE-TTT-----EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTH
T ss_pred             CccEEEEeccCCCCCCCCcEEEEcCcccc---ccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHh
Confidence            6777777532      2457777766532   222221   1233456788888666 46665432210000   0  00


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCC--CCeEEEEE--cCCCCcEEEEeeCCCcEEEEeC-CCCcee---eEEecc
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHT--AEVNCLSF--NPYSEYILATGSADKTVALWDL-RNLKLK---LHSFES  770 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~--~~I~sl~~--sp~g~~llasgs~Dg~I~IWDl-~~~~~~---~~~~~~  770 (860)
                      ..+.....+++||+.+.   +.++++.--.  .....+.|  .|+..+-++.+.-.++|..|-- ..+...   +.....
T Consensus       216 ~~~~yG~~l~vWD~~~r---~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~  292 (461)
T PF05694_consen  216 EAGKYGHSLHVWDWSTR---KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA  292 (461)
T ss_dssp             HHH-S--EEEEEETTTT---EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred             hcccccCeEEEEECCCC---cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence            11345678999999986   4444443222  23445555  5666665666666667766654 333321   111111


Q ss_pred             -----------------CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccccc-CCCC-----ccEEEecC
Q psy4578         771 -----------------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE-DGPP-----ELLFIHGG  827 (860)
Q Consensus       771 -----------------h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~-~~~~-----~~i~~~~~  827 (860)
                                       -..-++.|..|.|.+++.+++=.+|.|+.||+........+..-. .+..     ..+. -..
T Consensus       293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~-g~~  371 (461)
T PF05694_consen  293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVK-GKR  371 (461)
T ss_dssp             EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred             cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccc-ccc
Confidence                             134579999999999977777789999999998755432221000 0000     0000 001


Q ss_pred             ccCceEEEEEccCCCeEEEEEe
Q psy4578         828 HTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       828 h~~~I~~i~~spdg~~Llasgs  849 (860)
                      -.+...-+..|.||+.+.+|.|
T Consensus       372 l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  372 LRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             --S----EEE-TTSSEEEEE--
T ss_pred             cCCCCCeEEEccCCeEEEEEee
Confidence            1234467889999999888876

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=90.99  E-value=14  Score=42.16  Aligned_cols=155  Identities=8%  Similarity=0.081  Sum_probs=87.5

Q ss_pred             ccCCcEEEEEeCCCcEEEEEcCCCCcc-cCeeeccCCCCCeeEEEEcc----CCCeEEEEEeCCCceeeecccccccCCC
Q psy4578         631 LLHESLFGSVADDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNP----YSEYILATGSADKTQFEVEEEEEENYDQ  705 (860)
Q Consensus       631 p~~~~~lasgs~DG~I~IWd~~~~~~~-~~~~~~~~h~~~V~~l~~sp----~g~~llasgs~Dg~i~~~~~~~~~~~dg  705 (860)
                      +++...+++|+..|.++||+...+... ..+..-..-..+|..+..-.    .....+|+- .-..              
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~k--------------   98 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL-HPRK--------------   98 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe-cCCE--------------
Confidence            445678999999999999999654321 11212223456787777642    111223332 2222              


Q ss_pred             cEEEEeCCCCCCC------CCeeeecCCC--CCeEEEEEcC----CCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCC
Q psy4578         706 KLMIWDTRSHNVS------KPSHTVDAHT--AEVNCLSFNP----YSEYILATGSADKTVALWDLRNLKLKLHSFESHKD  773 (860)
Q Consensus       706 ~I~iwDl~~~~~~------~~~~~~~~h~--~~I~sl~~sp----~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~  773 (860)
                       +.+|.+......      -.+.....|.  .....+++-|    .|...++.=+.||.+.+|+-+.... ...+.. --
T Consensus        99 -l~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f-~~~lp~-~l  175 (418)
T PF14727_consen   99 -LSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF-SRFLPD-FL  175 (418)
T ss_pred             -EEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE-EEEcCC-CC
Confidence             556655221100      0111222222  2233444443    3345688899999999999876542 222322 22


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      -...++|++..+. +++++.+..+..|....
T Consensus       176 lPgPl~Y~~~tDs-fvt~sss~~l~~Yky~~  205 (418)
T PF14727_consen  176 LPGPLCYCPRTDS-FVTASSSWTLECYKYQD  205 (418)
T ss_pred             CCcCeEEeecCCE-EEEecCceeEEEecHHH
Confidence            3344778887775 78999999999997654

>KOG1916|consensus

Probab=90.82  E-value=0.07  Score=63.23  Aligned_cols=174  Identities=16%  Similarity=0.192  Sum_probs=89.4

Q ss_pred             eeeeEeecc--CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         624 LIDVAWHLL--HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       624 V~~v~~sp~--~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      +.-|.|+|.  +..+++.+..+|.|++.+.....    ...+.+|...++.++|-..|-..+..-+-||+++.|...++.
T Consensus       183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~  258 (1283)
T KOG1916|consen  183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL----RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS  258 (1283)
T ss_pred             cceeeecccccccceeeeccCCCceeEeeechHH----HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence            345556552  45677888889999998887532    245566888888777655444444444555555555444333


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCC-CeEEEEEcCC-------CCc-EEEEee-CCCcEEEEeCCCCceeeEE----
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTA-EVNCLSFNPY-------SEY-ILATGS-ADKTVALWDLRNLKLKLHS----  767 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~-~I~sl~~sp~-------g~~-llasgs-~Dg~I~IWDl~~~~~~~~~----  767 (860)
                      ...-+|+|.+....   +++...+.|++ +-.|.-|+.+       +.+ ++++++ .+..+++|....+++.+..    
T Consensus       259 v~f~Qiyi~g~~~~---rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~  335 (1283)
T KOG1916|consen  259 VGFYQIYITGKIVH---RCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDG  335 (1283)
T ss_pred             cceeeeeeeccccH---hhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccc
Confidence            33333555554433   34444455552 2222223321       111 234444 4566999988877763111    


Q ss_pred             ---eccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         768 ---FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       768 ---~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                         ...|.+.|+.+..+..-..-+++.+-||.|.+|.-+.
T Consensus       336 v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  336 VQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             eEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence               1123333322111110001134455678888886443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=90.72  E-value=4.4  Score=45.66  Aligned_cols=164  Identities=11%  Similarity=0.138  Sum_probs=78.6

Q ss_pred             eeeeEeeccCCcEEEEEe--------------------CCCcEEEEEcCCCCcccCeeeccCCC--CCeeEEEE--ccCC
Q psy4578         624 LIDVAWHLLHESLFGSVA--------------------DDQKLMIWDTRSHNVSKPSHTVDAHT--AEVNCLSF--NPYS  679 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs--------------------~DG~I~IWd~~~~~~~~~~~~~~~h~--~~V~~l~~--sp~g  679 (860)
                      -.++-|.| ..+.++|+.                    ...++.+||+.+.   +.++++.--.  .....|.|  .|+.
T Consensus       183 gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r---~~~Q~idLg~~g~~pLEvRflH~P~~  258 (461)
T PF05694_consen  183 GYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR---KLLQTIDLGEEGQMPLEVRFLHDPDA  258 (461)
T ss_dssp             ---EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT---EEEEEEES-TTEEEEEEEEE-SSTT-
T ss_pred             CCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC---cEeeEEecCCCCCceEEEEecCCCCc
Confidence            45677777 566677654                    3467999999984   4444443222  23556666  4667


Q ss_pred             CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCC-----CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEE
Q psy4578         680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHN-----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA  754 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~-----~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~  754 (860)
                      .+=++.+.-.++|+.|..+..+.+..+ ++-++....     ....+..+..-..-|+.+..|.|.+++.+++-.+|.|+
T Consensus       259 ~~gFvg~aLss~i~~~~k~~~g~W~a~-kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdvr  337 (461)
T PF05694_consen  259 NYGFVGCALSSSIWRFYKDDDGEWAAE-KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVR  337 (461)
T ss_dssp             -EEEEEEE--EEEEEEEE-ETTEEEEE-EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEE
T ss_pred             cceEEEEeccceEEEEEEcCCCCeeee-EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEE
Confidence            776777767777666655443332211 122222110     00112222333566899999999999888988999999


Q ss_pred             EEeCCCCceeeEEec---c---------------CCCceEEEEEcCCCCCEEEEEE
Q psy4578         755 LWDLRNLKLKLHSFE---S---------------HKDEIFQVQWSPHNETILASSG  792 (860)
Q Consensus       755 IWDl~~~~~~~~~~~---~---------------h~~~V~~l~fsp~g~~lL~tgs  792 (860)
                      .||+.....+...-+   +               -.+...-+..|-||+.+.+|.|
T Consensus       338 qYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  338 QYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             EEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             EEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            999987655322211   1               1123356778888887666665

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK10115 protease 2; Provisional

Probab=90.47  E-value=52  Score=40.43  Aligned_cols=121  Identities=9%  Similarity=-0.004  Sum_probs=66.2

Q ss_pred             cceeeeEeeccCCcEEEEE-eCCC----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         622 RLLIDVAWHLLHESLFGSV-ADDQ----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasg-s~DG----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      -.+..+.|+| ++++++.+ +.+|    .|++.|+.++...  ...+.+   .-..++|.++++.++.+...++.     
T Consensus       127 ~~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l--~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~-----  195 (686)
T PRK10115        127 YTLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWY--PELLDN---VEPSFVWANDSWTFYYVRKHPVT-----  195 (686)
T ss_pred             EEEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCC--CccccC---cceEEEEeeCCCEEEEEEecCCC-----
Confidence            4577889998 55555543 3333    4888888875311  111111   11469999999987776654321     


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeE-EEEEcCCCCcEEEEeeC--CCcEEEEeCC
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVN-CLSFNPYSEYILATGSA--DKTVALWDLR  759 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~-sl~~sp~g~~llasgs~--Dg~I~IWDl~  759 (860)
                           .....|..+++.++.. .....+........ .+..+.++.++++.++.  ++.+.+|+..
T Consensus       196 -----~~~~~v~~h~lgt~~~-~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        196 -----LLPYQVWRHTIGTPAS-QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             -----CCCCEEEEEECCCChh-HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence                 0123478888887621 11122222222333 23334477776654433  4678888853

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=90.46  E-value=5.3  Score=45.36  Aligned_cols=136  Identities=10%  Similarity=0.077  Sum_probs=73.3

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR  713 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~  713 (860)
                      +..++.++.+|.+..+|..+++.   +-...  .+....+..  .+.. +..++.+|.               +..+|..
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~---~W~~~--~~~~~~~~~--~~~~-vy~~~~~g~---------------l~ald~~  312 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQI---VWKRE--YGSVNDFAV--DGGR-IYLVDQNDR---------------VYALDTR  312 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCE---EEeec--CCCccCcEE--ECCE-EEEEcCCCe---------------EEEEECC
Confidence            34556677889999999988642   21111  111111222  2443 455566776               6666666


Q ss_pred             CCCCCCCeeeecCC-CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEE-EEEcCCCCCEEEEE
Q psy4578         714 SHNVSKPSHTVDAH-TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ-VQWSPHNETILASS  791 (860)
Q Consensus       714 ~~~~~~~~~~~~~h-~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~-l~fsp~g~~lL~tg  791 (860)
                      +++   .+.....- .....+....  +. .++.++.||.+.+.|..+++. +.........+.+ ..+ .++ . |+.+
T Consensus       313 tG~---~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~~-~~~~~~~~~~~~s~P~~-~~~-~-l~v~  382 (394)
T PRK11138        313 GGV---ELWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINREDGRF-VAQQKVDSSGFLSEPVV-ADD-K-LLIQ  382 (394)
T ss_pred             CCc---EEEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECCCCCE-EEEEEcCCCcceeCCEE-ECC-E-EEEE
Confidence            552   11111100 0111222222  34 367889999999999999886 4444332222322 222 234 3 6788


Q ss_pred             ECCCcEEEEEC
Q psy4578         792 GTDRRLHVWDL  802 (860)
Q Consensus       792 s~Dg~I~iWdl  802 (860)
                      +.||.++.++.
T Consensus       383 t~~G~l~~~~~  393 (394)
T PRK11138        383 ARDGTVYAITR  393 (394)
T ss_pred             eCCceEEEEeC
Confidence            99999988764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=90.16  E-value=10  Score=42.96  Aligned_cols=144  Identities=11%  Similarity=-0.039  Sum_probs=72.7

Q ss_pred             EEEEEeCCCcEEEEEcCCCCcccCeeeccCCC-C---CeeEEEEcc--CCCeEEEEEeCCCceeeecccccccCCCcEEE
Q psy4578         636 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT-A---EVNCLSFNP--YSEYILATGSADKTQFEVEEEEEENYDQKLMI  709 (860)
Q Consensus       636 ~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~-~---~V~~l~~sp--~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~i  709 (860)
                      .++.++.+|.+..+|..+++..-......... .   ....+.-+|  .+.. +..++.+|.               +..
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~-vy~~~~~g~---------------l~a  270 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV-VYALAYNGN---------------LVA  270 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCE-EEEEEcCCe---------------EEE
Confidence            45567778899888888764311111000000 0   000111112  1343 445556666               777


Q ss_pred             EeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC-CceEEEEEcCCCCCEE
Q psy4578         710 WDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK-DEIFQVQWSPHNETIL  788 (860)
Q Consensus       710 wDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~-~~V~~l~fsp~g~~lL  788 (860)
                      +|..+++   .+....  ......+..  .+.. +..++.+|.+..+|..+++. +-...... ....+.... ++ . +
T Consensus       271 ld~~tG~---~~W~~~--~~~~~~~~~--~~~~-vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~sp~v~-~g-~-l  338 (394)
T PRK11138        271 LDLRSGQ---IVWKRE--YGSVNDFAV--DGGR-IYLVDQNDRVYALDTRGGVE-LWSQSDLLHRLLTAPVLY-NG-Y-L  338 (394)
T ss_pred             EECCCCC---EEEeec--CCCccCcEE--ECCE-EEEEcCCCeEEEEECCCCcE-EEcccccCCCcccCCEEE-CC-E-E
Confidence            7777653   221111  011111222  2443 66677899999999988765 22111111 111222221 33 3 6


Q ss_pred             EEEECCCcEEEEECCCCCc
Q psy4578         789 ASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       789 ~tgs~Dg~I~iWdl~~~~~  807 (860)
                      +.++.||.++..|..+++.
T Consensus       339 ~v~~~~G~l~~ld~~tG~~  357 (394)
T PRK11138        339 VVGDSEGYLHWINREDGRF  357 (394)
T ss_pred             EEEeCCCEEEEEECCCCCE
Confidence            7889999999999888554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.15  E-value=28  Score=36.90  Aligned_cols=156  Identities=8%  Similarity=0.067  Sum_probs=82.5

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN  702 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~  702 (860)
                      .+.+.++++++..+.+....++.-.+|-...+......  .  ....++.-.|++++. +.+....+..           
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~--~--~g~~l~~PS~d~~g~-~W~v~~~~~~-----------   88 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV--L--TGGSLTRPSWDPDGW-VWTVDDGSGG-----------   88 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee--c--cCCccccccccCCCC-EEEEEcCCCc-----------
Confidence            68899999854444444433444444444332211211  1  234778889999966 4555544443           


Q ss_pred             CCCcEEEEe-CCCCCCCCCee-eecCCCCCeEEEEEcCCCCcEEEEee--CCCcEEEEeCC---CC--ce---eeEEecc
Q psy4578         703 YDQKLMIWD-TRSHNVSKPSH-TVDAHTAEVNCLSFNPYSEYILATGS--ADKTVALWDLR---NL--KL---KLHSFES  770 (860)
Q Consensus       703 ~dg~I~iwD-l~~~~~~~~~~-~~~~h~~~I~sl~~sp~g~~llasgs--~Dg~I~IWDl~---~~--~~---~~~~~~~  770 (860)
                          .+++. ...+.. .... ....-.+.|+.+.+||+|..+.+...  .++.|.+--+.   .+  ..   +......
T Consensus        89 ----~~~~~~~~~g~~-~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~  163 (253)
T PF10647_consen   89 ----VRVVRDSASGTG-EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP  163 (253)
T ss_pred             ----eEEEEecCCCcc-eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc
Confidence                44442 222211 1111 11111128999999999998555542  34666665442   11  11   1222223


Q ss_pred             CCCceEEEEEcCCCCCEEEEEECCCcEEE
Q psy4578         771 HKDEIFQVQWSPHNETILASSGTDRRLHV  799 (860)
Q Consensus       771 h~~~V~~l~fsp~g~~lL~tgs~Dg~I~i  799 (860)
                      ....+.+++|.+++..++++...++.+..
T Consensus       164 ~~~~v~~v~W~~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  164 LLSDVTDVAWSDDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             ccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence            35688999999999854433344444444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2444|consensus

Probab=90.02  E-value=0.99  Score=46.12  Aligned_cols=107  Identities=14%  Similarity=0.156  Sum_probs=56.7

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578         633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDT  712 (860)
Q Consensus       633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl  712 (860)
                      .+.-+++|+.+|.|.+|+..-.  ......+..-...|-+.--.-+...+..+++.||.               |+.|++
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~--g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~---------------ir~~n~  131 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLE--GAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR---------------IRACNI  131 (238)
T ss_pred             cCceEEeecccceEEEecCCcc--chHHHhhhcccccceeccccccccceeEEeccCCc---------------eeeecc
Confidence            4556888999999999998631  11111111112233332222222226788888887               999998


Q ss_pred             CCCCCCCCeeeecCCC-CCeEEEEEcCCCCcEEEEe--eCCCcEEEEeCCC
Q psy4578         713 RSHNVSKPSHTVDAHT-AEVNCLSFNPYSEYILATG--SADKTVALWDLRN  760 (860)
Q Consensus       713 ~~~~~~~~~~~~~~h~-~~I~sl~~sp~g~~llasg--s~Dg~I~IWDl~~  760 (860)
                      .-.   +.+.....|+ ..+.....+..+.+ ++.+  |.|..++.|++..
T Consensus       132 ~p~---k~~g~~g~h~~~~~e~~ivv~sd~~-i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  132 KPN---KVLGYVGQHNFESGEELIVVGSDEF-LKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccC---ceeeeeccccCCCcceeEEecCCce-EEeeccccchhhhhcchhh
Confidence            765   3333444455 33333333333332 4444  5555555565543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=89.51  E-value=0.73  Score=35.16  Aligned_cols=30  Identities=10%  Similarity=0.276  Sum_probs=27.4

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcC
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTR  652 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~  652 (860)
                      ..|.+++|+| ..+++|.|+.+|.|.++.+.
T Consensus        12 ~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCP-TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence            5699999999 78899999999999999983

>KOG2377|consensus

Probab=89.38  E-value=4.6  Score=45.23  Aligned_cols=160  Identities=15%  Similarity=0.133  Sum_probs=97.7

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY  703 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~  703 (860)
                      .+.+-|.-  .+..+.+...|.+.=|-+......-++..-....++|.++.|++|++ ++|+--.+++            
T Consensus        25 sngvFfDD--aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~------------   89 (657)
T KOG2377|consen   25 SNGVFFDD--ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKT------------   89 (657)
T ss_pred             ccceeecc--CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCce------------
Confidence            34555653  22222233445667776654322222222223467999999999988 6888888888            


Q ss_pred             CCcEEEEeCCCCCC-CCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC
Q psy4578         704 DQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  782 (860)
Q Consensus       704 dg~I~iwDl~~~~~-~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp  782 (860)
                         |.+++....+. .......+..+..|.+.+|+.+..  +|--+ +..+-+|.+......++..+.|+..|+--.|++
T Consensus        90 ---v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e--~A~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~  163 (657)
T KOG2377|consen   90 ---VDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE--IAFIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCP  163 (657)
T ss_pred             ---EEEEecCCCchhhHHHHHhccCcceeEEEEEecCee--EEEEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEcc
Confidence               88888743321 112222334456689999998754  44444 345778877665555677778888999999999


Q ss_pred             CCCCEEEEEE-CCCcEEEEECCC
Q psy4578         783 HNETILASSG-TDRRLHVWDLSK  804 (860)
Q Consensus       783 ~g~~lL~tgs-~Dg~I~iWdl~~  804 (860)
                      +.+.+|.+.+ ..+++.-+.+++
T Consensus       164 et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  164 ETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             ccceEeeeccccccccccEEEee
Confidence            8876555555 344444444443

>KOG2247|consensus

Probab=88.84  E-value=0.058  Score=60.12  Aligned_cols=149  Identities=11%  Similarity=0.170  Sum_probs=99.0

Q ss_pred             CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEe
Q psy4578         668 AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG  747 (860)
Q Consensus       668 ~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasg  747 (860)
                      ...-...|-+.+.. ++.++.+..               +..||-...    .... ...++....++|.-+|..+++.+
T Consensus        35 v~pi~~~w~~e~~n-lavaca~ti---------------v~~YD~agq----~~le-~n~tg~aldm~wDkegdvlavlA   93 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHN-LAVACANTI---------------VIYYDKAGQ----VILE-LNPTGKALDMAWDKEGDVLAVLA   93 (615)
T ss_pred             cccceeeEecCCCc-eehhhhhhH---------------HHhhhhhcc----eecc-cCCchhHhhhhhccccchhhhhh
Confidence            34455678888877 666666666               777775532    1111 12345667789999888767778


Q ss_pred             eCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecC
Q psy4578         748 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG  827 (860)
Q Consensus       748 s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~  827 (860)
                      ...+.+.+||+.+....-..+.+ ...-.-+.|++.+.. ++.+...|.+.+++..+.+              .+...+.
T Consensus        94 ek~~piylwd~n~eytqqLE~gg-~~s~sll~wsKg~~e-l~ig~~~gn~viynhgtsR--------------~iiv~Gk  157 (615)
T KOG2247|consen   94 EKTGPIYLWDVNSEYTQQLESGG-TSSKSLLAWSKGTPE-LVIGNNAGNIVIYNHGTSR--------------RIIVMGK  157 (615)
T ss_pred             hcCCCeeechhhhhhHHHHhccC-cchHHHHhhccCCcc-ccccccccceEEEeccchh--------------hhhhhcc
Confidence            88899999999865431111111 112222789998886 7788889999999988733              2333445


Q ss_pred             ccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         828 HTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       828 h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      |...+++++|.+.+.  .+.++.|.++.
T Consensus       158 h~RRgtq~av~lEd~--vil~dcd~~L~  183 (615)
T KOG2247|consen  158 HQRRGTQIAVTLEDY--VILCDCDNTLS  183 (615)
T ss_pred             cccceeEEEecccce--eeecCcHHHHH
Confidence            889999999999887  44566665543

>PHA03098 kelch-like protein; Provisional

Probab=88.64  E-value=9.3  Score=45.29  Aligned_cols=25  Identities=8%  Similarity=0.037  Sum_probs=18.5

Q ss_pred             ChhhcCCcceEEEccEEEeecceee
Q psy4578         177 KADLVDQKFELKINEVRFVGHPTLV  201 (860)
Q Consensus       177 ~~~lc~~~fel~vd~~~fvg~Pv~~  201 (860)
                      .+.+|+=.+.+.+++..|-.|=+.+
T Consensus         6 ~~~~~Dv~l~~~~~~~~~~~Hk~vL   30 (534)
T PHA03098          6 LQKFCDESIIIVNGGGIIKVHKIIL   30 (534)
T ss_pred             cCCCCCEEEEEEcCCEEEEeHHHHH
Confidence            5568888777777888887776554

>PRK10115 protease 2; Provisional

Probab=88.57  E-value=28  Score=42.67  Aligned_cols=120  Identities=8%  Similarity=0.049  Sum_probs=71.3

Q ss_pred             CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEe
Q psy4578         668 AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG  747 (860)
Q Consensus       668 ~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasg  747 (860)
                      -.+..+.|+|+|++++.+.+.+|.           ....+++.|+.++...  ...+. ...  ..++|++++..++.+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~-----------E~~~l~v~d~~tg~~l--~~~i~-~~~--~~~~w~~D~~~~~y~~  190 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSR-----------RQYGIRFRNLETGNWY--PELLD-NVE--PSFVWANDSWTFYYVR  190 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCc-----------EEEEEEEEECCCCCCC--Ccccc-Ccc--eEEEEeeCCCEEEEEE
Confidence            346778999999976666655554           3445888899876311  11111 111  4699999998766665


Q ss_pred             eCC-----CcEEEEeCCCCce-eeEEeccCCCceE-EEEEcCCCCCEEEEEE--CCCcEEEEECC
Q psy4578         748 SAD-----KTVALWDLRNLKL-KLHSFESHKDEIF-QVQWSPHNETILASSG--TDRRLHVWDLS  803 (860)
Q Consensus       748 s~D-----g~I~IWDl~~~~~-~~~~~~~h~~~V~-~l~fsp~g~~lL~tgs--~Dg~I~iWdl~  803 (860)
                      ..+     ..|+.+++.+... ....+........ .+..+.+++++++.+.  .++.+.+|+..
T Consensus       191 ~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        191 KHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             ecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            433     3578888887721 1223333233333 3333447887665554  34678888853

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=88.49  E-value=7.5  Score=46.33  Aligned_cols=113  Identities=18%  Similarity=0.245  Sum_probs=62.7

Q ss_pred             CCeEEEEEcCCCCcEEEEeeCCC-----cEEEEeCCCCceeeE-EeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEEC
Q psy4578         729 AEVNCLSFNPYSEYILATGSADK-----TVALWDLRNLKLKLH-SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL  802 (860)
Q Consensus       729 ~~I~sl~~sp~g~~llasgs~Dg-----~I~IWDl~~~~~~~~-~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl  802 (860)
                      +.-..+.|-|+|+ .++|-+.||     .|..+.-++.+.--. .-.+....+...+|+-...- + .....+.+.+|-.
T Consensus       247 g~e~~LSWkpqgS-~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~v-l-av~~~n~~~lwtt  323 (1243)
T COG5290         247 GMEHQLSWKPQGS-KYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTV-L-AVAEGNLLKLWTT  323 (1243)
T ss_pred             cchhccccccCCc-eeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHH-H-HHhhcceEEEEEc
Confidence            3334589999999 588866554     366665443321001 11223445677888776652 3 3445678999987


Q ss_pred             CCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeecc
Q psy4578         803 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPF  858 (860)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~f  858 (860)
                      .+...-.            ..  .-.-..+.-+.|+|....-+.-.+.+.+.+|.|
T Consensus       324 kNyhWYL------------K~--e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f  365 (1243)
T COG5290         324 KNYHWYL------------KV--ERQIPGISYVKWHPEEKNTLLFRDGERILRVFF  365 (1243)
T ss_pred             cceEEEE------------EE--eecCCCcceeeeccccCcEEEEecCCeEEEEEe
Confidence            7632110            00  011234566788887655454555555555544

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=88.44  E-value=30  Score=37.75  Aligned_cols=155  Identities=14%  Similarity=0.194  Sum_probs=73.4

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      ..+.+..+.-++ ++.++++++......-||.-.. ...+..  ..-...|..+.|.|++. +.+++ ..|.        
T Consensus       143 ~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~-~w~~~~--r~~~~riq~~gf~~~~~-lw~~~-~Gg~--------  208 (302)
T PF14870_consen  143 TSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQT-TWQPHN--RNSSRRIQSMGFSPDGN-LWMLA-RGGQ--------  208 (302)
T ss_dssp             ----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-S-S-EEEE----SSS-EEEEEE-TTS--EEEEE-TTTE--------
T ss_pred             CcceeEeEEECC-CCcEEEEECcccEEEEecCCCc-cceEEc--cCccceehhceecCCCC-EEEEe-CCcE--------
Confidence            346788888886 7888877765555567775421 122222  22357899999999977 34433 6676        


Q ss_pred             cccCCCcEEEEeC-CCCCC-CCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec--cCCCce
Q psy4578         700 EENYDQKLMIWDT-RSHNV-SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE--SHKDEI  775 (860)
Q Consensus       700 ~~~~dg~I~iwDl-~~~~~-~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~--~h~~~V  775 (860)
                             |+.=+. ...+. .+.+.......-.+..++|.+++. +.++|+ .|.+ +...+.++.....-.  .-....
T Consensus       209 -------~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~  278 (302)
T PF14870_consen  209 -------IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNL  278 (302)
T ss_dssp             -------EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS--
T ss_pred             -------EEEccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccceECccccCCCCce
Confidence                   444431 11000 011111112234578999999877 566555 4544 445555555333322  234567


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEE
Q psy4578         776 FQVQWSPHNETILASSGTDRRLHVW  800 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs~Dg~I~iW  800 (860)
                      +.+.|.+..+  -...|.+|.+--|
T Consensus       279 ~~i~f~~~~~--gf~lG~~G~ll~~  301 (302)
T PF14870_consen  279 YRIVFVNPDK--GFVLGQDGVLLRY  301 (302)
T ss_dssp             -EEEEEETTE--EEEE-STTEEEEE
T ss_pred             EEEEEcCCCc--eEEECCCcEEEEe
Confidence            8888876554  3456678887655

>KOG4499|consensus

Probab=88.41  E-value=28  Score=36.01  Aligned_cols=156  Identities=12%  Similarity=0.067  Sum_probs=87.2

Q ss_pred             CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEe
Q psy4578         668 AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG  747 (860)
Q Consensus       668 ~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasg  747 (860)
                      ...++-..+|+|++ ++....|-.      ..-....|.++.|-...     .+..+...-+--+.++|+.+.+.+..+-
T Consensus       109 nR~NDgkvdP~Gry-y~GtMad~~------~~le~~~g~Ly~~~~~h-----~v~~i~~~v~IsNgl~Wd~d~K~fY~iD  176 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRY-YGGTMADFG------DDLEPIGGELYSWLAGH-----QVELIWNCVGISNGLAWDSDAKKFYYID  176 (310)
T ss_pred             cccccCccCCCCce-eeeeecccc------ccccccccEEEEeccCC-----CceeeehhccCCccccccccCcEEEEEc
Confidence            44566677899997 333222221      11123345566665432     2222333334446789998888667777


Q ss_pred             eCCCcEEEEe--CCCCce----eeEEecc----CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCC
Q psy4578         748 SADKTVALWD--LRNLKL----KLHSFES----HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG  817 (860)
Q Consensus       748 s~Dg~I~IWD--l~~~~~----~~~~~~~----h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~  817 (860)
                      +.+-+|.-||  ..++..    .+..+..    .....-.++..-+|. +.+++-..|+|...|..+++....       
T Consensus       177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~L~e-------  248 (310)
T KOG4499|consen  177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKILLE-------  248 (310)
T ss_pred             cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCcEEEE-------
Confidence            8888898888  444432    1222221    011122344455665 566777788999999988655433       


Q ss_pred             CCccEEEecCccCceEEEEEccC-CCeEEEEEeC
Q psy4578         818 PPELLFIHGGHTAKISDFSWNPN-EPWVICSVSE  850 (860)
Q Consensus       818 ~~~~i~~~~~h~~~I~~i~~spd-g~~Llasgs~  850 (860)
                             ..--...|+++||--. -..+.+|+..
T Consensus       249 -------iklPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  249 -------IKLPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             -------EEcCCCceEEEEecCCCccEEEEEehh
Confidence                   3333667888888543 3334555543

>KOG1900|consensus

Probab=88.31  E-value=9.1  Score=48.38  Aligned_cols=173  Identities=18%  Similarity=0.259  Sum_probs=98.1

Q ss_pred             eccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEE--------ccC
Q psy4578         607 ENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF--------NPY  678 (860)
Q Consensus       607 ~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~--------sp~  678 (860)
                      ++... .+...+.+...-+.+-+.|.=+..-+|  -|..+.+|+.+++..   ...+.+-...|..|..        .|.
T Consensus        65 ~~IP~-el~eq~~~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e---~~~~d~~shtIl~V~LvkPkpgvFv~~  138 (1311)
T KOG1900|consen   65 VNIPD-ELLEQFSNIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNE---LAEYDGLSHTILKVGLVKPKPGVFVPE  138 (1311)
T ss_pred             ccCCH-HHHHHhcCcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCc---cccccchhhhheeeeeecCCCCcchhh
Confidence            44433 333344455555566666644444443  477899999998433   3444444555555543        344


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCC----CCCCC--CeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRS----HNVSK--PSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  752 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~----~~~~~--~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~  752 (860)
                      =+++|+.++.-.                |.++-+.-    +....  ....+......|+|+....+|+ ++.+ |.|| 
T Consensus       139 IqhlLvvaT~~e----------------i~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~~-G~dg-  199 (1311)
T KOG1900|consen  139 IQHLLVVATPVE----------------IVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR-IFFA-GRDG-  199 (1311)
T ss_pred             hheeEEecccce----------------EEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc-EEEe-ecCC-
Confidence            456666665433                33332221    11000  0122233456789999888888 5555 5566 


Q ss_pred             EEEEeCCCC--c------e---------------eeEEec-cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         753 VALWDLRNL--K------L---------------KLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       753 I~IWDl~~~--~------~---------------~~~~~~-~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                       .+|.+...  .      +               .+..+. .+..+|..++...... ++.+-+..|+|.+||+....
T Consensus       200 -~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  200 -NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN-ILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             -CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc-eeeeeccCceEEEEEccCCC
Confidence             55554210  0      0               012223 4667899999986654 79999999999999998743

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=88.18  E-value=5.9  Score=47.26  Aligned_cols=92  Identities=26%  Similarity=0.386  Sum_probs=56.9

Q ss_pred             cEEEEeCCCCCCCCCeeeecCCCCCeEEEEEc--CCCCcEEEEeeCCCcEEEEeCC-----CCce---eeEE--eccCC-
Q psy4578         706 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN--PYSEYILATGSADKTVALWDLR-----NLKL---KLHS--FESHK-  772 (860)
Q Consensus       706 ~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~s--p~g~~llasgs~Dg~I~IWDl~-----~~~~---~~~~--~~~h~-  772 (860)
                      .+.|||.+.+.. ..-..+ ...+.|.++.|.  |+|+.++++| ..+.|.+|--.     ....   ++..  +..|+ 
T Consensus        52 ~LtIWD~~~~~l-E~~~~f-~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~  128 (631)
T PF12234_consen   52 ELTIWDTRSGVL-EYEESF-SEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTP  128 (631)
T ss_pred             EEEEEEcCCcEE-EEeeee-cCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccchhhhcCCcccceeEEEEeecCCC
Confidence            499999987631 222233 346889999994  6888756555 56777777431     1110   1222  22333 


Q ss_pred             CceEEEEEcCCCCCEEEEEECCCcEEEEECC
Q psy4578         773 DEIFQVQWSPHNETILASSGTDRRLHVWDLS  803 (860)
Q Consensus       773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~  803 (860)
                      .+|.+..|.++|.  ++.|+ ++.+.|+|-.
T Consensus       129 h~Igds~Wl~~G~--LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  129 HPIGDSIWLKDGT--LVVGS-GNQLFVFDKW  156 (631)
T ss_pred             CCccceeEecCCe--EEEEe-CCEEEEECCC
Confidence            5789999999996  33443 5678888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.11  E-value=14  Score=39.14  Aligned_cols=111  Identities=10%  Similarity=0.056  Sum_probs=70.3

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCc-EEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQK-LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~-I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      ...--.|.|+|....-++.+-.-|+ ..++|.+.......+...++ ..---.=.|||||.++.+|-.+-.         
T Consensus        67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~-RHfyGHGvfs~dG~~LYATEndfd---------  136 (366)
T COG3490          67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-RHFYGHGVFSPDGRLLYATENDFD---------  136 (366)
T ss_pred             ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC-ceeecccccCCCCcEEEeecCCCC---------
Confidence            3445578888877777777777775 56888877533221111110 111122368999997666543211         


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEE
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA  745 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~lla  745 (860)
                        ...|.|-|||.+.+  ...+..+..|.-.-..+.|.+||+.+++
T Consensus       137 --~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvv  178 (366)
T COG3490         137 --PNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVV  178 (366)
T ss_pred             --CCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEE
Confidence              24567999999854  3556677778888889999999996333

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=87.63  E-value=42  Score=35.65  Aligned_cols=147  Identities=16%  Similarity=0.191  Sum_probs=83.1

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578         633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDT  712 (860)
Q Consensus       633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl  712 (860)
                      .++.++.|+.+| +.+++.....  ......  +...|..+...++-+.+++.+  |+.               +.++++
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~--~~~~i~--~~~~I~ql~vl~~~~~llvLs--d~~---------------l~~~~L   63 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPS--KPTRIL--KLSSITQLSVLPELNLLLVLS--DGQ---------------LYVYDL   63 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCc--cceeEe--ecceEEEEEEecccCEEEEEc--CCc---------------cEEEEc
Confidence            567788888888 8999983321  112221  233499999999877554443  366               888887


Q ss_pred             CCCCCCCCee-----------eecCCCCCeEEEE--EcCCCCcEEEEeeCCCcEEEEeCCCCc----eeeEEeccCCCce
Q psy4578         713 RSHNVSKPSH-----------TVDAHTAEVNCLS--FNPYSEYILATGSADKTVALWDLRNLK----LKLHSFESHKDEI  775 (860)
Q Consensus       713 ~~~~~~~~~~-----------~~~~h~~~I~sl~--~sp~g~~llasgs~Dg~I~IWDl~~~~----~~~~~~~~h~~~V  775 (860)
                      ..-.......           ........+...+  -...+...++.+. ...|.+|......    .....+. -...+
T Consensus        64 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~  141 (275)
T PF00780_consen   64 DSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPP  141 (275)
T ss_pred             hhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCc
Confidence            6542211000           0111233444444  1233443344444 4588888776531    1234443 45788


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578         776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~  807 (860)
                      .+++|..  +. ++.|. .+...+.|+.++..
T Consensus       142 ~~i~~~~--~~-i~v~~-~~~f~~idl~~~~~  169 (275)
T PF00780_consen  142 SSIAFLG--NK-ICVGT-SKGFYLIDLNTGSP  169 (275)
T ss_pred             EEEEEeC--CE-EEEEe-CCceEEEecCCCCc
Confidence            9999983  32 55555 44577888886443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.55  E-value=44  Score=35.85  Aligned_cols=165  Identities=13%  Similarity=0.231  Sum_probs=95.2

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeee--ccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHT--VDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~--~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      .+....|+++.|+|+++.+++++... .-.||=...|.   .+.+  +.+ -...-.|.|..+|.+ +++--.++.    
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p-~~iVElt~~Gd---lirtiPL~g-~~DpE~Ieyig~n~f-vi~dER~~~----  151 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKP-AAIVELTKEGD---LIRTIPLTG-FSDPETIEYIGGNQF-VIVDERDRA----  151 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCC-ceEEEEecCCc---eEEEecccc-cCChhHeEEecCCEE-EEEehhcce----
Confidence            34456699999999666666655544 44444333332   2332  222 233456788877764 555555665    


Q ss_pred             cccccccCCCcEEEEeCCCCCCC-------CCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee--eE
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVS-------KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK--LH  766 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~-------~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~--~~  766 (860)
                                 +.++.+......       -++..........-.++|.|.+.. |..+-.-.-+.||.+......  ++
T Consensus       152 -----------l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~-l~~aKEr~P~~I~~~~~~~~~l~~~  219 (316)
T COG3204         152 -----------LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHR-LFVAKERNPIGIFEVTQSPSSLSVH  219 (316)
T ss_pred             -----------EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCce-EEEEEccCCcEEEEEecCCcccccc
Confidence                       444444332100       011111222556788999998886 556666667777766543311  11


Q ss_pred             EeccCC-------CceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         767 SFESHK-------DEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       767 ~~~~h~-------~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ....+.       ..|.++.|++....+++-+..++.+.-.|...
T Consensus       220 ~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         220 ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence            111121       34778889987777888888888888877664

>KOG3630|consensus

Probab=86.82  E-value=3.9  Score=50.56  Aligned_cols=133  Identities=14%  Similarity=0.130  Sum_probs=81.2

Q ss_pred             EeCCCcEEEEEcCCCCcc-----cCee---eccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEe
Q psy4578         640 VADDQKLMIWDTRSHNVS-----KPSH---TVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWD  711 (860)
Q Consensus       640 gs~DG~I~IWd~~~~~~~-----~~~~---~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwD  711 (860)
                      .+.+-.|..||++.-...     .+++   +.........++.|+|.-....+++..|+.               |++..
T Consensus       120 tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls---------------l~V~~  184 (1405)
T KOG3630|consen  120 TSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS---------------LRVKS  184 (1405)
T ss_pred             ecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc---------------hhhhh
Confidence            334447889998742111     1111   112234567789999976655677778887               77776


Q ss_pred             CCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-eeEEecc-CCCceEEEEEcCCCCCEEE
Q psy4578         712 TRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-KLHSFES-HKDEIFQVQWSPHNETILA  789 (860)
Q Consensus       712 l~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~-h~~~V~~l~fsp~g~~lL~  789 (860)
                      +....  ..+.. ...+...+|++|+|.|.. ++.|...|++.-|...-... .+..... ....|.+++|-....++++
T Consensus       185 ~~~~~--~~v~s-~p~t~~~Tav~WSprGKQ-l~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  185 TKQLA--QNVTS-FPVTNSQTAVLWSPRGKQ-LFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhh--hhhcc-cCcccceeeEEeccccce-eeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            65321  12222 234567899999999996 88999999998886543211 0111111 1468999999887776444


Q ss_pred             EE
Q psy4578         790 SS  791 (860)
Q Consensus       790 tg  791 (860)
                      -+
T Consensus       261 y~  262 (1405)
T KOG3630|consen  261 YG  262 (1405)
T ss_pred             ec
Confidence            44

>KOG2377|consensus

Probab=86.64  E-value=11  Score=42.47  Aligned_cols=107  Identities=15%  Similarity=0.264  Sum_probs=70.5

Q ss_pred             CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce---eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEEC
Q psy4578         726 AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL---KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL  802 (860)
Q Consensus       726 ~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~---~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl  802 (860)
                      ...++|.++.|++|++ ++|+--.|++|.+++....+.   .....+..+..|....|+....  ++..+. .-+.+|.+
T Consensus        64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~-~G~e~y~v  139 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE--IAFITD-QGIEFYQV  139 (657)
T ss_pred             cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee--EEEEec-CCeEEEEE
Confidence            3467999999999998 699999999999998844332   1223334445688999988754  455543 34666665


Q ss_pred             CCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         803 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      ....             +.++....|...|.=..|.++.+.++.+.+
T Consensus       140 ~pek-------------rslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  140 LPEK-------------RSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             chhh-------------hhhhhhhhcccCccEEEEccccceEeeecc
Confidence            5422             122333456667777788888776555554

>KOG2247|consensus

Probab=86.17  E-value=0.12  Score=57.62  Aligned_cols=144  Identities=9%  Similarity=0.157  Sum_probs=97.5

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY  703 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~  703 (860)
                      -....|-+.+.+ ++.++.+..+..||-...    ... -...++....++|.-+++.+++.+-..+.            
T Consensus        37 pi~~~w~~e~~n-lavaca~tiv~~YD~agq----~~l-e~n~tg~aldm~wDkegdvlavlAek~~p------------   98 (615)
T KOG2247|consen   37 PIIHRWRPEGHN-LAVACANTIVIYYDKAGQ----VIL-ELNPTGKALDMAWDKEGDVLAVLAEKTGP------------   98 (615)
T ss_pred             cceeeEecCCCc-eehhhhhhHHHhhhhhcc----eec-ccCCchhHhhhhhccccchhhhhhhcCCC------------
Confidence            445678886566 666777888999987542    111 12235667788998888876777777777            


Q ss_pred             CCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCC
Q psy4578         704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH  783 (860)
Q Consensus       704 dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~  783 (860)
                         +.+||+.+... ..+..-..|..  .-+.|++.+.. ++.|...|.+.|++..+.+. ......|...+++++|.+.
T Consensus        99 ---iylwd~n~eyt-qqLE~gg~~s~--sll~wsKg~~e-l~ig~~~gn~viynhgtsR~-iiv~Gkh~RRgtq~av~lE  170 (615)
T KOG2247|consen   99 ---IYLWDVNSEYT-QQLESGGTSSK--SLLAWSKGTPE-LVIGNNAGNIVIYNHGTSRR-IIVMGKHQRRGTQIAVTLE  170 (615)
T ss_pred             ---eeechhhhhhH-HHHhccCcchH--HHHhhccCCcc-ccccccccceEEEeccchhh-hhhhcccccceeEEEeccc
Confidence               99999986422 12211111222  23789998886 77888899999999988775 4444448889999999998


Q ss_pred             CCCEEEEEECCC
Q psy4578         784 NETILASSGTDR  795 (860)
Q Consensus       784 g~~lL~tgs~Dg  795 (860)
                      +.  .+.++.|.
T Consensus       171 d~--vil~dcd~  180 (615)
T KOG2247|consen  171 DY--VILCDCDN  180 (615)
T ss_pred             ce--eeecCcHH
Confidence            85  44555443

>KOG1916|consensus

Probab=86.17  E-value=1  Score=54.02  Aligned_cols=166  Identities=11%  Similarity=0.152  Sum_probs=90.5

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC--CCccc--CeeeccCCCCCeeEEEEccC---CCeEEEEEeCCCc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS--HNVSK--PSHTVDAHTAEVNCLSFNPY---SEYILATGSADKT  691 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~--~~~~~--~~~~~~~h~~~V~~l~~sp~---g~~llasgs~Dg~  691 (860)
                      +..+.|-.+.|-..+-..+.  ..-|...||++.-  |+...  .+.........+.-|.|+|-   ..+ +..+-.++.
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~-ic~~~~~~~  206 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVY-ICYGLKGGE  206 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccce-eeeccCCCc
Confidence            44577888888543322222  3347889999863  22111  12222333455677788773   222 344444444


Q ss_pred             eeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEE-----------EcCCCCcEEEEeeCCCcEEEEeCC-
Q psy4578         692 QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS-----------FNPYSEYILATGSADKTVALWDLR-  759 (860)
Q Consensus       692 i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~-----------~sp~g~~llasgs~Dg~I~IWDl~-  759 (860)
                                     +++..+....    ...+.+|...+..++           .+|||. ++++++.||.++.|.+- 
T Consensus       207 ---------------i~lL~~~ra~----~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi  266 (1283)
T KOG1916|consen  207 ---------------IRLLNINRAL----RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYI  266 (1283)
T ss_pred             ---------------eeEeeechHH----HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeee
Confidence                           6665554421    133444655554443           589998 69999999998888653 


Q ss_pred             ----CCceeeEEeccCCC-ceEEEEEcCC-------CCC-EEEEEE-CCCcEEEEECCCCCcc
Q psy4578         760 ----NLKLKLHSFESHKD-EIFQVQWSPH-------NET-ILASSG-TDRRLHVWDLSKIGEE  808 (860)
Q Consensus       760 ----~~~~~~~~~~~h~~-~V~~l~fsp~-------g~~-lL~tgs-~Dg~I~iWdl~~~~~~  808 (860)
                          ...+ .+.++.|.+ +-.|.-|+.+       +.+ ++++++ .+.-+++|......|.
T Consensus       267 ~g~~~~rc-lhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  267 TGKIVHRC-LHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eccccHhh-hhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence                2233 566666763 3333223321       111 234444 3456899987776655

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=85.33  E-value=2.1  Score=31.89  Aligned_cols=32  Identities=19%  Similarity=0.135  Sum_probs=27.8

Q ss_pred             cceeeeEeeccCC--cEEEEEeCCCcEEEEEcCC
Q psy4578         622 RLLIDVAWHLLHE--SLFGSVADDQKLMIWDTRS  653 (860)
Q Consensus       622 ~~V~~v~~sp~~~--~~lasgs~DG~I~IWd~~~  653 (860)
                      +.|.+|.|+|.++  ++|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999998666  7999999999999999985

It contains a characteristic DLL sequence motif.

>PHA03098 kelch-like protein; Provisional

Probab=85.16  E-value=20  Score=42.50  Aligned_cols=153  Identities=10%  Similarity=0.064  Sum_probs=70.5

Q ss_pred             CCcEEEEEeCCC------cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCc
Q psy4578         633 HESLFGSVADDQ------KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQK  706 (860)
Q Consensus       633 ~~~~lasgs~DG------~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~  706 (860)
                      ++.+++.|+.++      .+..||..+..- .....+.........+.+   +..+++.||.++.          .....
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~----------~~~~~  359 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW-NKVPELIYPRKNPGVTVF---NNRIYVIGGIYNS----------ISLNT  359 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCee-eECCCCCcccccceEEEE---CCEEEEEeCCCCC----------Eecce
Confidence            567777777543      466777765321 111111111112222222   3447777776532          11234


Q ss_pred             EEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC------CcEEEEeCCCCceeeE-EeccCCCceEEEE
Q psy4578         707 LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD------KTVALWDLRNLKLKLH-SFESHKDEIFQVQ  779 (860)
Q Consensus       707 I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D------g~I~IWDl~~~~~~~~-~~~~h~~~V~~l~  779 (860)
                      +..||..+... .....+.........+.+  ++. +++.|+.+      +.+..||..+...... .+....... +++
T Consensus       360 v~~yd~~~~~W-~~~~~lp~~r~~~~~~~~--~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~  434 (534)
T PHA03098        360 VESWKPGESKW-REEPPLIFPRYNPCVVNV--NNL-IYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI  434 (534)
T ss_pred             EEEEcCCCCce-eeCCCcCcCCccceEEEE--CCE-EEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE
Confidence            77888876532 222222111111112222  344 67777732      4588999887654111 111111111 122


Q ss_pred             EcCCCCCEEEEEECCC--------cEEEEECCCCC
Q psy4578         780 WSPHNETILASSGTDR--------RLHVWDLSKIG  806 (860)
Q Consensus       780 fsp~g~~lL~tgs~Dg--------~I~iWdl~~~~  806 (860)
                       ..++ .+++.||.++        .+.+||..+..
T Consensus       435 -~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        435 -YHDG-KIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             -EECC-EEEEECCccCCCCCcccceEEEecCCCCc
Confidence             2234 3567776432        37888877643

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=84.87  E-value=9.4  Score=43.40  Aligned_cols=123  Identities=16%  Similarity=0.175  Sum_probs=71.0

Q ss_pred             EEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCc------EEEEeeCCCcEEEEeCCCCceeeEEec----cCCCceE
Q psy4578         707 LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY------ILATGSADKTVALWDLRNLKLKLHSFE----SHKDEIF  776 (860)
Q Consensus       707 I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~------llasgs~Dg~I~IWDl~~~~~~~~~~~----~h~~~V~  776 (860)
                      ++-.|+..+   +.+.....|..-  -+.|.|...+      .-+.|-.+..|.-.|.|-....+....    .......
T Consensus       492 LykmDIErG---kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fs  566 (776)
T COG5167         492 LYKMDIERG---KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFS  566 (776)
T ss_pred             ceeeecccc---eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccccc
Confidence            666666665   344444444332  4666664321      123455566676667664432222211    1123334


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~  850 (860)
                      +..-...| + ++.||..|.|++||--..              +....+.+....|..+..+.+|.+++|||-.
T Consensus       567 s~~tTesG-y-Ia~as~kGDirLyDRig~--------------rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         567 SGMTTESG-Y-IAAASRKGDIRLYDRIGK--------------RAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             ccccccCc-e-EEEecCCCceeeehhhcc--------------hhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence            44444455 4 899999999999995431              1122334567789999999999999988743

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.32  E-value=35  Score=38.37  Aligned_cols=115  Identities=11%  Similarity=0.200  Sum_probs=56.1

Q ss_pred             CCeeEEEEccCCCeEEEEEeCCCceeeeccccc-ccCC-CcEEEEeCCCCC-CCCCeeeecCCCCCeEEEEEcCCCCcEE
Q psy4578         668 AEVNCLSFNPYSEYILATGSADKTQFEVEEEEE-ENYD-QKLMIWDTRSHN-VSKPSHTVDAHTAEVNCLSFNPYSEYIL  744 (860)
Q Consensus       668 ~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~-~~~d-g~I~iwDl~~~~-~~~~~~~~~~h~~~I~sl~~sp~g~~ll  744 (860)
                      .....++|.++|+ ++++-..+-.     .... .... ..|.+++-..+. .......+.........+++.++|  ++
T Consensus        14 ~~P~~ia~d~~G~-l~V~e~~~y~-----~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--ly   85 (367)
T TIGR02604        14 RNPIAVCFDERGR-LWVAEGITYS-----RPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VY   85 (367)
T ss_pred             CCCceeeECCCCC-EEEEeCCcCC-----CCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EE
Confidence            3457789999998 4444332211     0000 0011 246666543321 112223333334456889999888  45


Q ss_pred             EEeeCCCcEEEEeCCCC-----c--eeeEEecc----CCCceEEEEEcCCCCCEEEEEE
Q psy4578         745 ATGSADKTVALWDLRNL-----K--LKLHSFES----HKDEIFQVQWSPHNETILASSG  792 (860)
Q Consensus       745 asgs~Dg~I~IWDl~~~-----~--~~~~~~~~----h~~~V~~l~fsp~g~~lL~tgs  792 (860)
                      ++ +.....++.|....     .  ..+..+..    +......++|.|+|. |.++.+
T Consensus        86 V~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G  142 (367)
T TIGR02604        86 VA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG  142 (367)
T ss_pred             Ee-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence            54 34433334455321     1  11122222    234577899999997 444444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499|consensus

Probab=83.71  E-value=26  Score=36.20  Aligned_cols=146  Identities=13%  Similarity=0.137  Sum_probs=84.3

Q ss_pred             cceeeeEeeccCCcEEEEEeC---------CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578         622 RLLIDVAWHLLHESLFGSVAD---------DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ  692 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~---------DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i  692 (860)
                      ...++-..+| ++++++-.-.         .|.++.|-..-     .+..+...-+--+.++|+.+...+..+-+.+-+|
T Consensus       109 nR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-----~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  109 NRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAGH-----QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             cccccCccCC-CCceeeeeeccccccccccccEEEEeccCC-----CceeeehhccCCccccccccCcEEEEEccCceEE
Confidence            3455666777 6666433222         24455554421     1222222233446789998888777777777775


Q ss_pred             eeecccccc-cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccC
Q psy4578         693 FEVEEEEEE-NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH  771 (860)
Q Consensus       693 ~~~~~~~~~-~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h  771 (860)
                      ..|+.+..+ ...+.=.++|++..   ++....     .--.++...+|. +.+++-+.|+|...|..+++. +..+.-.
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~---~~~e~~-----~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK~-L~eiklP  252 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKS---QPFESL-----EPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGKI-LLEIKLP  252 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccC---CCcCCC-----CCCcceEccCCc-EEEEEecCcEEEEECCCCCcE-EEEEEcC
Confidence            444433321 11122234555443   111111     112344555676 677888889999999999998 7777767


Q ss_pred             CCceEEEEEcCC
Q psy4578         772 KDEIFQVQWSPH  783 (860)
Q Consensus       772 ~~~V~~l~fsp~  783 (860)
                      ...++|++|--.
T Consensus       253 t~qitsccFgGk  264 (310)
T KOG4499|consen  253 TPQITSCCFGGK  264 (310)
T ss_pred             CCceEEEEecCC
Confidence            889999999643

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=83.59  E-value=37  Score=38.10  Aligned_cols=151  Identities=11%  Similarity=0.134  Sum_probs=74.8

Q ss_pred             cceeeeEeeccCCcEEEEEe-----------CCC-cEEEEEcCCCC-cccCeeeccCCCCCeeEEEEccCCCeEEEEEeC
Q psy4578         622 RLLIDVAWHLLHESLFGSVA-----------DDQ-KLMIWDTRSHN-VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA  688 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs-----------~DG-~I~IWd~~~~~-~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~  688 (860)
                      .....|+|.+ +++++++-.           ..+ .|.+++-.++. .......+...-...+.+++.++|  ++++. .
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-~   89 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-P   89 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC-C
Confidence            4567889997 677666542           223 67777654321 112223333334456889998877  45543 3


Q ss_pred             CCceeee-cccccccCCCcEEEEeCCCCCCCCCeeeecC----CCCCeEEEEEcCCCCcEEEEeeC--------------
Q psy4578         689 DKTQFEV-EEEEEENYDQKLMIWDTRSHNVSKPSHTVDA----HTAEVNCLSFNPYSEYILATGSA--------------  749 (860)
Q Consensus       689 Dg~i~~~-~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~----h~~~I~sl~~sp~g~~llasgs~--------------  749 (860)
                      .. ++.+ +.+..+..++...+.          +..+..    +......++|.|+|...+..|+.              
T Consensus        90 ~~-i~~~~d~~gdg~ad~~~~~l----------~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~  158 (367)
T TIGR02604        90 PD-ILFLRDKDGDDKADGEREVL----------LSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDES  158 (367)
T ss_pred             Ce-EEEEeCCCCCCCCCCccEEE----------EEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCc
Confidence            33 2211 112222222111111          001111    23446789999999843333421              


Q ss_pred             ----CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEE
Q psy4578         750 ----DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS  790 (860)
Q Consensus       750 ----Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~t  790 (860)
                          .|.|.-+|..+...  ..+...-.....++|+|+|+. +++
T Consensus       159 ~~~~~g~i~r~~pdg~~~--e~~a~G~rnp~Gl~~d~~G~l-~~t  200 (367)
T TIGR02604       159 RQGLGGGLFRYNPDGGKL--RVVAHGFQNPYGHSVDSWGDV-FFC  200 (367)
T ss_pred             ccccCceEEEEecCCCeE--EEEecCcCCCccceECCCCCE-EEE
Confidence                14455566655443  222222233568999999973 444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=83.43  E-value=3.2  Score=30.91  Aligned_cols=32  Identities=22%  Similarity=0.348  Sum_probs=26.6

Q ss_pred             CceEEEEEcCCCC--CEEEEEECCCcEEEEECCC
Q psy4578         773 DEIFQVQWSPHNE--TILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       773 ~~V~~l~fsp~g~--~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ++++++.|+|...  -+|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999997543  5788888889999999995

It contains a characteristic DLL sequence motif.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=82.60  E-value=8.5  Score=38.26  Aligned_cols=32  Identities=22%  Similarity=0.509  Sum_probs=27.3

Q ss_pred             CceEEEEEcCC-----CCCEEEEEECCCcEEEEECCC
Q psy4578         773 DEIFQVQWSPH-----NETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       773 ~~V~~l~fsp~-----g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ..+.+++|||.     ++.+|++.+.+|.+.+|.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            47999999994     466899999999999998765

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1900|consensus

Probab=82.38  E-value=80  Score=40.47  Aligned_cols=155  Identities=14%  Similarity=0.175  Sum_probs=95.2

Q ss_pred             EEEEeeccchhhhhhhhhc-ccceeeeEeeccC--------CcEEEEEeCCCcEEEEEcCCCCcccCeee------ccCC
Q psy4578         602 EVMYLENKTRAQICQLLDK-LRLLIDVAWHLLH--------ESLFGSVADDQKLMIWDTRSHNVSKPSHT------VDAH  666 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~~~-~~~V~~v~~sp~~--------~~~lasgs~DG~I~IWd~~~~~~~~~~~~------~~~h  666 (860)
                      .-+++|+.....-...++. ...|..|..-...        .++|+.+ .--.|.++-+.-.+.......      +...
T Consensus        99 n~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~~~~~~~~~~f~~~~~i~~d  177 (1311)
T KOG1900|consen   99 NNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSFDEFTGELSIFNTSFKISVD  177 (1311)
T ss_pred             CeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEeccccCcccccccceeeecC
Confidence            3467777766554444444 3557776653222        2233333 334677776643221111111      1223


Q ss_pred             CCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCc-EEEEeCCCCCC---CCCeeeec-CCCCCeEEEEEcCCCC
Q psy4578         667 TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQK-LMIWDTRSHNV---SKPSHTVD-AHTAEVNCLSFNPYSE  741 (860)
Q Consensus       667 ~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~-I~iwDl~~~~~---~~~~~~~~-~h~~~I~sl~~sp~g~  741 (860)
                      +..|+|+....+|+ +|.+| .||.+|........+|.++ .+..++..+..   ...+..+. .+..+|..++......
T Consensus       178 g~~V~~I~~t~nGR-IF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~  255 (1311)
T KOG1900|consen  178 GVSVNCITYTENGR-IFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN  255 (1311)
T ss_pred             CceEEEEEeccCCc-EEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence            56789999778887 56655 6667888888888777766 77777655321   11122333 5677999999987655


Q ss_pred             cEEEEeeCCCcEEEEeCCC
Q psy4578         742 YILATGSADKTVALWDLRN  760 (860)
Q Consensus       742 ~llasgs~Dg~I~IWDl~~  760 (860)
                       ++.+-+..|+|.+||+..
T Consensus       256 -IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  256 -ILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             -eeeeeccCceEEEEEccC
Confidence             788999999999999976

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=80.06  E-value=1.3e+02  Score=37.50  Aligned_cols=124  Identities=15%  Similarity=0.198  Sum_probs=69.7

Q ss_pred             CCeEEEEEcC------CCCcEEEEeeC----CCcEEEEeCCCCceeeEEe--------------------c-----cCCC
Q psy4578         729 AEVNCLSFNP------YSEYILATGSA----DKTVALWDLRNLKLKLHSF--------------------E-----SHKD  773 (860)
Q Consensus       729 ~~I~sl~~sp------~g~~llasgs~----Dg~I~IWDl~~~~~~~~~~--------------------~-----~h~~  773 (860)
                      ..++.+.|-+      ....++++.+.    .+.|.-|.++.....++..                    .     ....
T Consensus       181 ~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~  260 (753)
T PF11635_consen  181 YQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNK  260 (753)
T ss_pred             ccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCC
Confidence            3566777754      23345555443    3468999887543221111                    0     1224


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec------CccCceEEEEEccCCCeEEEE
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG------GHTAKISDFSWNPNEPWVICS  847 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~------~h~~~I~~i~~spdg~~Llas  847 (860)
                      .|.+++-..-+. +++.+-.||+|.++|-.+.+..... ...+.....+....      .+..++..++|||.+.- ++.
T Consensus       261 ~V~si~~~~~~~-~v~~~~~DGsI~~~dr~t~~~~~~~-~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~-~v~  337 (753)
T PF11635_consen  261 RVVSITSPELDI-VVAFAFSDGSIEFRDRNTMKELNET-RTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCS-LVQ  337 (753)
T ss_pred             eEEEEEecccCc-EEEEEEcCCeEEEEecCcchhhccc-ccccCCccccccccccccccccCCCCceEEECcccce-EEE
Confidence            566776666665 5788889999999999887665444 00011111111110      12225667999999985 556


Q ss_pred             EeCCCeEe
Q psy4578         848 VSEDNIMQ  855 (860)
Q Consensus       848 gs~Dg~Ir  855 (860)
                      -..+|.+.
T Consensus       338 ~~~~~~~~  345 (753)
T PF11635_consen  338 IDEDGKTK  345 (753)
T ss_pred             EecCCCce
Confidence            66666543

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	860
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-88
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		4e-88
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-88
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		9e-87
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-83
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-81
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-13
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-13
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-09
2h9l_A	329	Wdr5delta23 Length = 329		2e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-09
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-08
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		6e-08
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-07
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		8e-08
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		6e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		9e-08
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-07
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		4e-07
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		5e-06
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		6e-07
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		8e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-04
4i79_A	399	Crystal Structure Of Human Nup43 Length = 399		9e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		6e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		8e-06
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		5e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		4e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-05
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		5e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		6e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		1e-04
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		7e-05
4a08_B	382	Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup		1e-04
3ei1_B	383	Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho		1e-04
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		1e-04
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-04
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		8e-04
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		2e-04
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		4e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-04
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		3e-04
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		8e-04

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score =  323 bits (827), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 161/221 (72%), Positives = 176/221 (79%), Gaps = 19/221 (8%)
Query: 639 SVADDQKLMIWDT----RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFX 694
           S +DD  + +WD     + H V    +    HTA V  ++++   E +  +  AD     
Sbjct: 201 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS-VAD----- 254
Query: 695 XXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
                    DQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILATGSADKTVA
Sbjct: 255 ---------DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 305
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
           LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 365
Query: 815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           EDGPPELLFIHGGHTAKISDFSWNPNEPW+ICSVSEDNIMQ
Sbjct: 366 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 406

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score =  323 bits (827), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 161/221 (72%), Positives = 176/221 (79%), Gaps = 19/221 (8%)
Query: 639 SVADDQKLMIWDT----RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFX 694
           S +DD  + +WD     + H V    +    HTA V  ++++   E +  +  AD     
Sbjct: 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS-VAD----- 252
Query: 695 XXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
                    DQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILATGSADKTVA
Sbjct: 253 ---------DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
           LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363
Query: 815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           EDGPPELLFIHGGHTAKISDFSWNPNEPW+ICSVSEDNIMQ
Sbjct: 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score =  322 bits (826), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 161/221 (72%), Positives = 176/221 (79%), Gaps = 19/221 (8%)
Query: 639 SVADDQKLMIWDT----RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFX 694
           S +DD  + +WD     + H V    +    HTA V  ++++   E +  +  AD     
Sbjct: 203 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS-VAD----- 256
Query: 695 XXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
                    DQKLMIWDTR++N SKPSHTVDAHTAEVNCLSFNPYSE+ILATGSADKTVA
Sbjct: 257 ---------DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 307
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 814
           LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 367
Query: 815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           EDGPPELLFIHGGHTAKISDFSWNPNEPW+ICSVSEDNIMQ
Sbjct: 368 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 408

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score =  318 bits (815), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 164/223 (73%), Positives = 177/223 (79%), Gaps = 23/223 (10%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
           S +DD  + +WD  +  V K    VDA      HTA V  +S++   E +  +  AD   
Sbjct: 195 SASDDHTICLWDISA--VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS-VAD--- 248
Query: 693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                      DQKLMIWDTRS+N SKPSH+VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct: 249 -----------DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297
Query: 753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
           VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPE 357
Query: 813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct: 358 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 727 HTAEVNCLSFNPYSEYILATGSADKTVALWDLR------------NLKLKLHSFESHKDE 774
           H  EVN   + P +  I+AT +    V ++D              N  L+L     H+ E
Sbjct: 123 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRL---RGHQKE 179
Query: 775 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 834
            + + W+P+    L S+  D  + +WD+S + +E    DA+        I  GHTA + D
Sbjct: 180 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAK-------TIFTGHTAVVED 232
Query: 835 FSWNPNEPWVICSVSED 851
            SW+     +  SV++D
Sbjct: 233 VSWHLLHESLFGSVADD 249

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  306 bits (784), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 158/223 (70%), Positives = 173/223 (77%), Gaps = 23/223 (10%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
           S +DD  + +WD  +    K    VDA      H+A V  ++++   E +  +  AD   
Sbjct: 197 SASDDHTVCLWDINA--GPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGS-VAD--- 250
Query: 693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                      DQKLMIWDTRS+  SKPSH VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct: 251 -----------DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKT 299
Query: 753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
           VALWDLRNLKLKLH+FESHKDEIFQV WSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct: 300 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAE 359
Query: 813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ
Sbjct: 360 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 402

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  301 bits (770), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 156/223 (69%), Positives = 171/223 (76%), Gaps = 23/223 (10%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPYSEYILATGSADKTQ 692
           S +DD  + +WD  +    K    VDA      H+A V  ++++   E +  +  AD   
Sbjct: 197 SASDDHTVCLWDINA--GPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGS-VAD--- 250
Query: 693 FXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                      DQKL IWDTRS+  SKPSH VDAHTAEVNCLSFNPYSE+ILATGSADKT
Sbjct: 251 -----------DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKT 299
Query: 753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
           VALWDLRNLKLKLH+FESHKDEIFQV WSPHNETILASSGTDRRL+VWDLSKIGEEQS E
Sbjct: 300 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAE 359
Query: 813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI Q
Sbjct: 360 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQ 402

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 81/165 (49%), Gaps = 29/165 (17%)
Query: 663 VDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSH 722
           + AH  EV C +F+    YI AT SADK               K+ IWD+ +    K  H
Sbjct: 653 IKAHEDEVLCCAFSSDDSYI-ATCSADK---------------KVKIWDSAT---GKLVH 693
Query: 723 TVDAHTAEVNCLSF-NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 781
           T D H+ +VNC  F N  +  +LATGS D  + LWDL N K   ++   H + +   ++S
Sbjct: 694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFS 752
Query: 782 PHNETILASSGTDRRLHVWDLSKIGEEQSTE------DAEDGPPE 820
           P +E +LAS   D  L +WD+    E +S         +ED PPE
Sbjct: 753 PDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSED-PPE 795

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 81/165 (49%), Gaps = 29/165 (17%)
Query: 663 VDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSH 722
           + AH  EV C +F+    YI AT SADK               K+ IWD+ +    K  H
Sbjct: 660 IKAHEDEVLCCAFSSDDSYI-ATCSADK---------------KVKIWDSAT---GKLVH 700
Query: 723 TVDAHTAEVNCLSF-NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 781
           T D H+ +VNC  F N  +  +LATGS D  + LWDL N K   ++   H + +   ++S
Sbjct: 701 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFS 759
Query: 782 PHNETILASSGTDRRLHVWDLSKIGEEQSTE------DAEDGPPE 820
           P +E +LAS   D  L +WD+    E +S         +ED PPE
Sbjct: 760 PDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSED-PPE 802

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 76  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 130
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
                           ++D+ + IWD ++    K   T+ AH+  V+ + FN     I++
Sbjct: 131 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 172
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
           + S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD SK
Sbjct: 173 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 229

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 94  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 148
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
                           ++D+ + IWD ++    K   T+ AH+  V+ + FN     I++
Sbjct: 149 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 190
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
           + S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD SK
Sbjct: 191 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 247

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 92  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 146
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
                           ++D+ + IWD ++    K   T+ AH+  V+ + FN     I++
Sbjct: 147 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 188
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
           + S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD SK
Sbjct: 189 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 245

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 36/205 (17%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA- 684
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 73  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 685 ------------TGSADKT-------------QFXXXXXXXXNYDQKLMIWDTRSHNVSK 719
                       TG   KT                       +YD    IWDT S    K
Sbjct: 129 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 720 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV- 778
               +D     V+ + F+P  +YILA  + D T+ LWD    K  L ++  HK+E + + 
Sbjct: 189 T--LIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKC-LKTYTGHKNEKYCIF 244
Query: 779 -QWSPHNETILASSGTDRRLHVWDL 802
             +S      + S   D  +++W+L
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWNL 269

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 37/229 (16%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 73  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 127
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
                           ++D+ + IWD ++    K   T+ AH+  V+ + FN     I++
Sbjct: 128 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 169
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 805
           + S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD SK 
Sbjct: 170 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK- 226
Query: 806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
           G+   T          +F         ++FS    + W++ S SEDN++
Sbjct: 227 GKCLKTYTGHKNEKYCIF---------ANFSVTGGK-WIV-SGSEDNLV 264

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 69  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 123
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
                           ++D+ + IWD ++    K   T+ AH+  V+ + FN     I++
Sbjct: 124 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 165
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
           + S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD SK
Sbjct: 166 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 222

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 76  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 130
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
                           ++D+ + IWD ++    K   T+ AH+  V+ + FN     I++
Sbjct: 131 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 172
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
           + S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD SK
Sbjct: 173 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 229

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 76  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 130
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
                           ++D+ + IWD ++    K   T+ AH+  V+ + FN     I++
Sbjct: 131 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 172
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
           + S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD SK
Sbjct: 173 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 229

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 87  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 141
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
                           ++D+ + IWD ++    K   T+ AH+  V+ + FN     I++
Sbjct: 142 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 183
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
           + S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD SK
Sbjct: 184 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 240

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 70  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 124
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
                           ++D+ + IWD ++    K   T+ AH+  V+ + FN     I++
Sbjct: 125 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 166
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
           + S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD SK
Sbjct: 167 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 223

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 75  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 129
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
                           ++D+ + IWD ++    K   T+ AH+  V+ + FN     I++
Sbjct: 130 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 171
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
           + S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD SK
Sbjct: 172 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 228

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 71  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 125
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
                           ++D+ + IWD ++    K   T+ AH+  V+ + FN     I++
Sbjct: 126 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 167
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
           + S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD SK
Sbjct: 168 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 224

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 36/205 (17%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA- 684
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 70  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSG 125
Query: 685 ------------TGSADKT-------------QFXXXXXXXXNYDQKLMIWDTRSHNVSK 719
                       TG   KT                       +YD    IWDT S    K
Sbjct: 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 720 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV- 778
               +D     V+ + F+P  +YILA  + D T+ LWD    K  L ++  HK+E + + 
Sbjct: 186 T--LIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKC-LKTYTGHKNEKYCIF 241
Query: 779 -QWSPHNETILASSGTDRRLHVWDL 802
             +S      + S   D  +++W+L
Sbjct: 242 ANFSVTGGKWIVSGSEDNLVYIWNL 266

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 36/205 (17%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA- 684
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 73  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 685 ------------TGSADKT-------------QFXXXXXXXXNYDQKLMIWDTRSHNVSK 719
                       TG   KT                       +YD    IWDT S    K
Sbjct: 129 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 720 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV- 778
               +D     V+ + F+P  +YILA  + D T+ LWD    K  L ++  HK+E + + 
Sbjct: 189 T--LIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKC-LKTYTGHKNEKYCIF 244
Query: 779 -QWSPHNETILASSGTDRRLHVWDL 802
             +S      + S   D  +++W+L
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWNL 269

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 66  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 120
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
                           ++D+ + IWD ++    K   T+ AH+  V+ + FN     I++
Sbjct: 121 ---------------GSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVS 162
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
           + S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD SK
Sbjct: 163 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK 219

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 36/205 (17%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA- 684
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 73  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 685 ------------TGSADKT-------------QFXXXXXXXXNYDQKLMIWDTRSHNVSK 719
                       TG   KT                       +YD    IWDT S    K
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 720 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV- 778
               +D     V+ + F+P  +YILA  + D T+ LWD    K  L ++  HK+E + + 
Sbjct: 189 T--LIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKC-LKTYTGHKNEKYCIF 244
Query: 779 -QWSPHNETILASSGTDRRLHVWDL 802
             +S      + S   D  +++W+L
Sbjct: 245 ANFSVTGGKWIVSGSEDNMVYIWNL 269

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           DVAW     +L  S +DD+ L IWD  S    K   T+  H+  V C +FNP S  I++ 
Sbjct: 73  DVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVS- 127
Query: 686 GSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
                           ++D+ + IWD ++    K   T+ AH+  V+ + FN     I++
Sbjct: 128 ---------------GSFDESVRIWDVKTGMCLK---TLPAHSDPVSAVHFNRDGSLIVS 169
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
           + S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD SK
Sbjct: 170 S-SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNDLKLWDYSK 226

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 105/217 (48%), Gaps = 44/217 (20%)
Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXX 698
           S +DD+ + +W+    ++     T+  H++ V  ++F+P  + I A+ S DKT       
Sbjct: 320 SASDDKTVKLWNRNGQHL----QTLTGHSSSVWGVAFSPDGQTI-ASASDDKT------V 368
Query: 699 XXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 758
              N + +L+              T+  H++ V  ++F+P  + I A+ S DKTV LW+ 
Sbjct: 369 KLWNRNGQLL-------------QTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN- 413
Query: 759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818
           RN +L L +   H   ++ V +SP ++TI AS+  D+ + +W+ +               
Sbjct: 414 RNGQL-LQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWNRN--------------- 456
Query: 819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
            +LL    GH++ +   +++P+    I S S+D  ++
Sbjct: 457 GQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVK 492

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 16/157 (10%)
Query: 666 HTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVD 725
           HT+ V C+ F+   EY LATG    TQ           D  L+   +     +K    ++
Sbjct: 63  HTSVVCCVKFSNDGEY-LATGCNKTTQVYRVS------DGSLVARLSDDSAANKDPENLN 115
Query: 726 AHTAE-----VNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 780
             ++      +  + F+P  ++ LATG+ D+ + +WD+ N K+ +   + H+ +I+ + +
Sbjct: 116 TSSSPSSDLYIRSVCFSPDGKF-LATGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDY 173
Query: 781 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 817
            P  + +++ SG DR + +WDL + G+   T   EDG
Sbjct: 174 FPSGDKLVSGSG-DRTVRIWDL-RTGQCSLTLSIEDG 208

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 21/153 (13%)
Query: 652 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWD 711
           ++  V K    V  HTA V  +++ P+++ ++A+GS D T               +M+W+
Sbjct: 66  KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCT---------------VMVWE 110
Query: 712 TRSHN----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH- 766
                    + +P  T++ HT  V  ++++P ++ +L +   D  + +WD+      L  
Sbjct: 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
Query: 767 SFESHKDEIFQVQWSPHNETILASSGTDRRLHV 799
             + H D I+ V WS  +  ++ +S  D+R+ V
Sbjct: 171 GPDVHPDTIYSVDWS-RDGALICTSCRDKRVRV 202

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 713 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH------ 766
           ++  V K    V  HTA V  +++ P+++ ++A+GS D TV +W++ +  L L       
Sbjct: 66  KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 767 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 803
           + E H   +  V W P  + +L S+G D  + VWD+ 
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVG 162

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 19/109 (17%)
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 805
           TG  DK V L               H   +  + W PHN+ ++AS   D  + VW++   
Sbjct: 67  TGRVDKNVPL------------VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDG 114
Query: 806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
           G             E +    GHT ++   +W+P    V+ S   DN++
Sbjct: 115 GLVLPLR-------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 21/153 (13%)
Query: 652 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWD 711
           ++  V K    V  HTA V  +++ P+++ ++A+GS D T               +M+W+
Sbjct: 66  KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCT---------------VMVWE 110
Query: 712 TRSHN----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH- 766
                    + +P  T++ HT  V  ++++P ++ +L +   D  + +WD+      L  
Sbjct: 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170
Query: 767 SFESHKDEIFQVQWSPHNETILASSGTDRRLHV 799
             + H D I+ V WS  +  ++ +S  D+R+ V
Sbjct: 171 GPDVHPDTIYSVDWS-RDGALICTSCRDKRVRV 202

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 713 RSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH------ 766
           ++  V K    V  HTA V  +++ P+++ ++A+GS D TV +W++ +  L L       
Sbjct: 66  KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 767 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 803
           + E H   +  V W P  + +L S+G D  + VWD+ 
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 19/109 (17%)
Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 805
           TG  DK V L               H   +  + W PHN+ ++AS   D  + VW++   
Sbjct: 67  TGRVDKNVPL------------VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114
Query: 806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
           G             E +    GHT ++   +W+P    V+ S   DN++
Sbjct: 115 GLVLPLR-------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 50/211 (23%)
Query: 631 LLHESLFG-SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG--- 686
           L  E+ F  S + D+ L +WD R+    K       H +EV  ++F+P +  IL+ G   
Sbjct: 84  LSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNRQILSAGAER 140
Query: 687 -----------------------------------SADKTQFXXXXXXXXNYDQKLMIWD 711
                                              SA+K Q          +D +L +W+
Sbjct: 141 EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Query: 712 TRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH 771
           T      +  +T  AH + VN LS +P  +YI ATG  DK + +WD+ NL      F++ 
Sbjct: 201 TNF----QIRYTFKAHESNVNHLSISPNGKYI-ATGGKDKKLLIWDILNLTYPQREFDA- 254
Query: 772 KDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
              I Q+ ++P  + +  + GTD+ + +++L
Sbjct: 255 GSTINQIAFNPKLQWV--AVGTDQGVKIFNL 283

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 704 DQKLMIW----DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 759
           D+ +MIW    + ++     P   +  H   V+ L+ +  + + +++ S DKT+ LWDLR
Sbjct: 48  DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDKTLRLWDLR 106
Query: 760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 807
                   F  H+ E++ V +SP N  IL S+G +R + +W++  +GE
Sbjct: 107 T-GTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI--LGE 150

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 44/196 (22%)
Query: 627 VAWHLLHESLFGSVADDQKLMIWDT---RSHNVSKPSHTVDAHTAEVNCLSFNPYS--EY 681
           V W+     +F S + D+ L +WDT   ++ +V     TV +H         +P S    
Sbjct: 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSH-------HMSPVSTKHC 157
Query: 682 ILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 741
           ++A G+                  K+ + D +S + S   H +  H  E+  +S++P  +
Sbjct: 158 LVAVGTRGP---------------KVQLCDLKSGSCS---HILQGHRQEILAVSWSPRYD 199
Query: 742 YILATGSADKTVALWDLRNLKLKLHSFESH---KDEIFQVQWSPHNETI----------- 787
           YILAT SAD  V LWD+R     L + + H   K +  +   + HN  +           
Sbjct: 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH 259
Query: 788 LASSGTDRRLHVWDLS 803
           L + GTD R+ +W+ S
Sbjct: 260 LLTVGTDNRMRLWNSS 275

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 702 NYDQKLMIWDT---RSHNVSKPSHTVDAHTAEVNCLSFNPYS--EYILATGSADKTVALW 756
           ++D+ L +WDT   ++ +V     TV +H         +P S    ++A G+    V L 
Sbjct: 119 SFDKTLKVWDTNTLQTADVFNFEETVYSH-------HMSPVSTKHCLVAVGTRGPKVQLC 171
Query: 757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 816
           DL++     H  + H+ EI  V WSP  + ILA++  D R+ +WD+ +      T D  +
Sbjct: 172 DLKSGSCS-HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
Query: 817 G 817
           G
Sbjct: 231 G 231

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 35/212 (16%)
Query: 600 IEEVMYLENKTRAQICQLLDKLR---LLIDVAWHLLHESLFGSVA-DDQKLMIWDTRSHN 655
           ++  +YL + +   I QLL   +    +  VAW  + E  + +V     ++ +WD +   
Sbjct: 134 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQ- 190
Query: 656 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSH 715
             K    + +H+A V  LS+N    YIL++GS              ++D ++       H
Sbjct: 191 --KRLRNMTSHSARVGSLSWN---SYILSSGS--------RSGHIHHHDVRVA-----EH 232
Query: 716 NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD---LRNLKLKLHSFESHK 772
           +V+    T+  H+ EV  L + P   + LA+G  D  V +W         + L +F  H+
Sbjct: 233 HVA----TLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 287
Query: 773 DEIFQVQWSPHNETILASSG--TDRRLHVWDL 802
             +  V W P    +LA+ G  +DR + +W++
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 18/169 (10%)
Query: 659 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVS 718
           P  T   H   V  +++ P+   +LATG                 D+ + IW+  S    
Sbjct: 279 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-------------DRHIRIWNVCSGACL 325
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 778
                VDAH+   + L    Y E I   G A   + +W    +  K+   + H   +  +
Sbjct: 326 S---AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-KVAELKGHTSRVLSL 381
Query: 779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 827
             SP   T+ AS+  D  L +W   ++   +  E  +    +   IH G
Sbjct: 382 TMSPDGATV-ASAAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 429

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 35/212 (16%)
Query: 600 IEEVMYLENKTRAQICQLLDKLR---LLIDVAWHLLHESLFGSVA-DDQKLMIWDTRSHN 655
           ++  +YL + +   I QLL   +    +  VAW  + E  + +V     ++ +WD +   
Sbjct: 123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQ- 179
Query: 656 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSH 715
             K    + +H+A V  LS+N    YIL++GS              ++D ++       H
Sbjct: 180 --KRLRNMTSHSARVGSLSWN---SYILSSGS--------RSGHIHHHDVRVA-----EH 221
Query: 716 NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL---RNLKLKLHSFESHK 772
           +V+    T+  H+ EV  L + P   + LA+G  D  V +W         + L +F  H+
Sbjct: 222 HVA----TLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276
Query: 773 DEIFQVQWSPHNETILASSG--TDRRLHVWDL 802
             +  V W P    +LA+ G  +DR + +W++
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 18/169 (10%)
Query: 659 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVS 718
           P  T   H   V  +++ P+   +LATG                 D+ + IW+  S    
Sbjct: 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS-------------DRHIRIWNVCSGACL 314
Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 778
                VDAH+   + L    Y E I   G A   + +W    +  K+   + H   +  +
Sbjct: 315 S---AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-KVAELKGHTSRVLSL 370
Query: 779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 827
             SP   T+ AS+  D  L +W   ++   +  E  +    +   IH G
Sbjct: 371 TMSPDGATV-ASAAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 418

>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 13/129 (10%)
Query: 706 KLMIWDTRSHNVSKPSH--TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 763
           +L IWD R    ++PS   ++      ++C+  +P  ++++ATG  D  +++WD+R   +
Sbjct: 213 QLKIWDFRQQG-NEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTM 271
Query: 764 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 823
            +   ++H+ E+++V + P N   L +   D  L  WD S    E+S+          LF
Sbjct: 272 PVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSS----------LF 321
Query: 824 IHGGHTAKI 832
             GG ++  
Sbjct: 322 HQGGRSSTF 330

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Query: 643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXN 702
           D  L +WD  +   ++       HT +V  ++F+  +  I++ GS DKT           
Sbjct: 107 DGTLRLWDLTTGTTTRR---FVGHTKDVLSVAFSSDNRQIVS-GSRDKT----------- 151
Query: 703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-ILATGSADKTVALWDLRNL 761
               + +W+T    V K +   ++H+  V+C+ F+P S   I+ +   DK V +W+L N 
Sbjct: 152 ----IKLWNTL--GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205
Query: 762 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 821
           KLK +    H   +  V  SP + ++ AS G D +  +WDL++ G+   T D  D    L
Sbjct: 206 KLKTNHI-GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE-GKHLYTLDGGDIINAL 262
Query: 822 LF 823
            F
Sbjct: 263 CF 264

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Query: 643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXN 702
           D  L +WD  +   ++       HT +V  ++F+  +  I++ GS DKT           
Sbjct: 84  DGTLRLWDLTTGTTTRR---FVGHTKDVLSVAFSSDNRQIVS-GSRDKT----------- 128
Query: 703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-ILATGSADKTVALWDLRNL 761
               + +W+T    V K +   ++H+  V+C+ F+P S   I+ +   DK V +W+L N 
Sbjct: 129 ----IKLWNTL--GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 762 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 821
           KLK +    H   +  V  SP + ++ AS G D +  +WDL++ G+   T D  D    L
Sbjct: 183 KLKTNHI-GHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE-GKHLYTLDGGDIINAL 239
Query: 822 LF 823
            F
Sbjct: 240 CF 241

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 36/233 (15%)
Query: 600 IEEVMYLENKTRAQICQLLDKLR---LLIDVAWHLLHESLFGSVA-DDQKLMIWDTRSHN 655
           ++  +YL + +   I QLL   +    +  VAW  + E  + +V     ++ +WD +   
Sbjct: 43  LDNSVYLWSASSGDILQLLQMEQPGEYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQ- 99
Query: 656 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSH 715
             K    + +H+A V  LS+N    YIL++GS              ++D ++       H
Sbjct: 100 --KRLRNMTSHSARVGSLSWN---SYILSSGSRSG--------HIHHHDVRVA-----EH 141
Query: 716 NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD---LRNLKLKLHSFESHK 772
           +V+    T+  H+ EV  L + P   + LA+G  D  V +W         + L +F  H+
Sbjct: 142 HVA----TLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196
Query: 773 DEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 823
             +  V W P    +LA+ G  +DR + +W++   G   S  DA      +L+
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQVCSILW 248

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 37/200 (18%)
Query: 632 LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN--------------- 676
           LHE    S + D  L +WD  +    +  H +  H A V C+ ++               
Sbjct: 207 LHEKRVVSGSRDATLRVWDIET---GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV 263
Query: 677 --PYSEYILAT--GSADKT---QFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTA 729
             P +E  L T  G  ++    QF        + D  + +WD  + N     HT+  H +
Sbjct: 264 WDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI---HTLTGHQS 320
Query: 730 EVNCLSFNPYSEYILATGSADKTVALWDLRNLKL--KLHSFESHKDEIFQVQWSPHNETI 787
             + +      + IL +G+AD TV +WD++  +    L     H+  +  +Q+   N+  
Sbjct: 321 LTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF---NKNF 374
Query: 788 LASSGTDRRLHVWDLSKIGE 807
           + +S  D  + +WDL K GE
Sbjct: 375 VITSSDDGTVKLWDL-KTGE 393

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 59/140 (42%), Gaps = 19/140 (13%)
Query: 660 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWD-TRSHNVS 718
           S  +  H    +   + P  E  L TGS D+T                ++WD T    +S
Sbjct: 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQT---------------CVLWDVTTGQRIS 194
Query: 719 K-PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ 777
              S     HTA+V  LS N  +  +  +GS D TV LWDLR     + ++  H+ +I  
Sbjct: 195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS 254
Query: 778 VQWSPHNETILASS--GTDR 795
           V++ P  +     S  GT R
Sbjct: 255 VKFFPDGQRFGTGSDDGTCR 274

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS-EYILATGSADKTVALWDLRNLK 762
           D+ + +W+T        S   + H   V+C+ F+P + +  + + S DKTV +W+L N K
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 763 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 822
           L+  +   H   +  V  SP + ++ AS G D  + +WDL++  +  S E          
Sbjct: 553 LR-STLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLE---------- 600
Query: 823 FIHGGHTAKISDFSWNPNEPWVICSVSEDNI 853
                  + I    ++PN  W +C+ +E  I
Sbjct: 601 -----ANSVIHALCFSPNRYW-LCAATEHGI 625

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 25/166 (15%)
Query: 635 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFX 694
           S+  S ++D  + +WD  + +  +   T+  HT  V  +SF+ +S  +LA+ SAD T   
Sbjct: 121 SVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFD-HSGKLLASCSADMT--- 173
Query: 695 XXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA 754
                       + +WD +     +  H    H   V+ +S  P  ++I++  S DKT+ 
Sbjct: 174 ------------IKLWDFQGFECIRTMH---GHDHNVSSVSIMPNGDHIVS-ASRDKTIK 217
Query: 755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 800
           +W+++     + +F  H++ +  V+    + T++AS   D+ + VW
Sbjct: 218 MWEVQT-GYCVKTFTGHREWVRMVR-PNQDGTLIASCSNDQTVRVW 261

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 763
           D  + +WD  + +  +   T+  HT  V  +SF+ +S  +LA+ SAD T+ LWD +  + 
Sbjct: 129 DATIKVWDYETGDFER---TLKGHTDSVQDISFD-HSGKLLASCSADMTIKLWDFQGFEC 184
Query: 764 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
            + +   H   +  V   P+ + I+++S  D+ + +W++
Sbjct: 185 -IRTMHGHDHNVSSVSIMPNGDHIVSAS-RDKTIKMWEV 221

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 38/185 (20%)
Query: 643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT----------- 691
           D  + IWD    N  +    +  HT  V CL    Y E ++ TGS+D T           
Sbjct: 152 DNTIKIWD---KNTLECKRILTGHTGSVLCLQ---YDERVIITGSSDSTVRVWDVNTGEM 205
Query: 692 --------------QFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN 737
                         +F        + D+ + +WD  S         +  H A VN + F+
Sbjct: 206 LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD 265
Query: 738 PYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 797
              +YI+ + S D+T+ +W+    +  + +   HK  I  +Q   + + ++ S  +D  +
Sbjct: 266 --DKYIV-SASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQ---YRDRLVVSGSSDNTI 318
Query: 798 HVWDL 802
            +WD+
Sbjct: 319 RLWDI 323

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 763
           D  + IWD    N  +    +  HT  V CL    Y E ++ TGS+D TV +WD+ N   
Sbjct: 152 DNTIKIWD---KNTLECKRILTGHTGSVLCLQ---YDERVIITGSSDSTVRVWDV-NTGE 204
Query: 764 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 803
            L++   H + +  +++   N  ++ +   DR + VWD++
Sbjct: 205 MLNTLIHHCEAVLHLRF---NNGMMVTCSKDRSIAVWDMA 241

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 23/166 (13%)
Query: 637 FGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFXXX 696
             S  +D  + IWD RS   S P  T   H A V  +++ P+   +LATG          
Sbjct: 232 LASGGNDNVVQIWDARS---SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG-------- 280
Query: 697 XXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT-GSADKTVAL 755
                  D+++  W+  +       +TVDA  ++V  L ++P+S+ I++T G  D  +++
Sbjct: 281 -----TMDKQIHFWNAAT---GARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 756 WDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 800
           W   +  L K     +H   +     SP    IL+++ +D  L  W
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGR-ILSTAASDENLKFW 376

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 782
           T+  H A V CLS+N    ++L++GS    +   D+R    ++ + + H  E+  + W  
Sbjct: 171 TMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227
Query: 783 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 839
            +   LAS G D  + +W            DA    P+  F    H A +   +W P
Sbjct: 228 -DGLQLASGGNDNVVQIW------------DARSSIPK--FTKTNHNAAVKAVAWCP 269

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 85/223 (38%), Gaps = 60/223 (26%)
Query: 633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS--EYILATGSADK 690
           H  +  S + D+ + +WD +       +H  + H + V CL    Y   +YI+ TGS D 
Sbjct: 172 HGGILVSGSTDRTVRVWDIKK---GCCTHVFEGHNSTVRCLDIVEYKNIKYIV-TGSRDN 227
Query: 691 TQFXXXXXXXXNYDQKLMIWD----------TRSHNVSKPSHT----------VDAHTAE 730
           T               L +W              H+     HT          +  H A 
Sbjct: 228 T---------------LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 731 VNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 790
           V  +S +     I+ +GS D T+ +WD+  +K  L+    H D I+   +  H      S
Sbjct: 273 VRTVSGHGN---IVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYD-HERKRCIS 327
Query: 791 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 833
           +  D  + +WDL            E+G  EL++   GHTA + 
Sbjct: 328 ASMDTTIRIWDL------------ENG--ELMYTLQGHTALVG 356

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 713 RSHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES 770
           R  N +     VD  AH   +  ++ +P   Y+L +GS D TV LW+  N      +FE 
Sbjct: 80  RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEG 138
Query: 771 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
           H+  +  V ++P + +  AS   DR + VW L +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 713 RSHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES 770
           R  N +     VD  AH   +  ++ +P   Y+L+ GS D TV LW+  N      +FE 
Sbjct: 80  RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEG 138
Query: 771 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
           H+  +  V ++P + +  AS   DR + VW L +
Sbjct: 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 31/184 (16%)
Query: 673 LSFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVN 732
           L++NP    + + G                 D+++ IW T   +    S   + H   V 
Sbjct: 22  LAWNPAGTLLASCGG----------------DRRIRIWGTEGDSWICKSVLSEGHQRTVR 65
Query: 733 CLSFNPYSEYILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASS 791
            ++++P   Y LA+ S D T  +W       + + + E H++E+  V W+P    +LA+ 
Sbjct: 66  KVAWSPCGNY-LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATC 123
Query: 792 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 851
             D+ + VW++          D ED   E + +   HT  +    W+P++  ++ S S D
Sbjct: 124 SRDKSVWVWEV----------DEED-EYECVSVLNSHTQDVKHVVWHPSQE-LLASASYD 171
Query: 852 NIMQ 855
           + ++
Sbjct: 172 DTVK 175

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 714 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKD 773
           ++N  +     +AH   +  ++ +P   Y+L+ GS D TV LW+  N      +FE H+ 
Sbjct: 83  NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEH 141
Query: 774 EIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
            +  V ++P + +  AS   DR + VW L +
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 714 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKD 773
           ++N  +     +AH   +  ++ +P   Y+L+ GS D TV LW+  N      +FE H+ 
Sbjct: 83  NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQTFEGHEH 141
Query: 774 EIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
            +  V ++P + +  AS   DR + VW L +
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 51/205 (24%)
Query: 635 SLFGSVADDQKLMIWDTRSHNVSKPS-HTVDAHTAEVNCLSFNP--YSEYILATGSADKT 691
           ++  S + D K++IW   +   S+ + H V  H+A VN + + P  Y   +L   S    
Sbjct: 68  TILASCSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASS---- 121
Query: 692 QFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS----------- 740
                       D K+ + + + +  + P   +DAH   VN  S+ P +           
Sbjct: 122 ------------DGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTK 168
Query: 741 -EYILATGSADKTVALW----DLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGT 793
                 TG AD  V +W    D +   L+  + E H D +  V WSP     + LAS   
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227
Query: 794 DRRLHVWDLSKIGEEQSTEDAEDGP 818
           DR   +W          T+D E GP
Sbjct: 228 DRTCIIW----------TQDNEQGP 242

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 744 LATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 801
           LAT S+DKT+ ++++     KL  +   H+  +++V W+ P   TILAS   D ++ +W 
Sbjct: 24  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNIMQKPFK 859
                        E+G    + +H  H+A ++   W P+E  P ++ + S+  +    FK
Sbjct: 84  ------------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131
Query: 860 K 860
           +
Sbjct: 132 E 132

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 744 LATGSADKTVALWDLRN-LKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 801
           LAT S+D++V ++D+RN  ++ +     H+  ++QV W+ P    ILAS   DR++ +W 
Sbjct: 28  LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW- 86
Query: 802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 841
                        E+G  E    H GH + ++   W P++
Sbjct: 87  -----------REENGTWEKSHEHAGHDSSVNSVCWAPHD 115

>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex ( Purine At D-1 Position) At 3.0 A Resolution (Cpd 1) Length = 382

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 727 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK 764
           H A+V    FNP  ++++AT S D TV LWDLRN+K K
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 239

>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 383

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 727 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK 764
           H A+V    FNP  ++++AT S D TV LWDLRN+K K
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 240

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 25/166 (15%)
Query: 634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEV--NCLSFNPYSEYILATGSADKT 691
           +S+F S ++D ++++WDTR     KP+  +           L+++P    +   G  + T
Sbjct: 182 DSVFLSCSEDNRILLWDTR---CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238
Query: 692 QFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK 751
                          + + DT+S +    S     H+  V  L F+P+S   LA+ S D 
Sbjct: 239 ---------------VSLVDTKSTSCVLSSAV---HSQCVTGLVFSPHSVPFLASLSEDC 280
Query: 752 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 797
           ++A+ D  +L  +L   ++H+D +    WSP N ++L + G D ++
Sbjct: 281 SLAVLD-SSLS-ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQV 324

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 93/239 (38%), Gaps = 52/239 (21%)
Query: 602 EVMYLENKTRAQICQLLDKLRLLIDVAW-HLLHESLFGSVADDQKLMIWDTRSHNVSKPS 660
           ++  +E +T   I  L      +  V W H    ++  S + D K+MIW   +   S+ +
Sbjct: 34  KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA 93
Query: 661 -HTVDAHTAEVNCLSFNP--YSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNV 717
            H V  H+A VN + + P  Y   +L   S                D K+ + + + +  
Sbjct: 94  VHAV--HSASVNSVQWAPHEYGPMLLVASS----------------DGKVSVVEFKENGT 135
Query: 718 SKPSHTVDAHTAEVNCLSFNPYS------------EYILATGSADKTVALW----DLRNL 761
           + P   +DAH   VN  S+ P +                 TG AD  V +W    D +  
Sbjct: 136 TSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194
Query: 762 KLKLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818
            L+  + E H D +  V WSP     + +AS   DR   +W          T+D E GP
Sbjct: 195 VLE-STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW----------TQDNEQGP 242

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 744 LATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 801
           +AT S+DKT+ ++++     KL  +   H+  +++V W+ P   TILAS   D ++ +W 
Sbjct: 24  MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNIMQKPFK 859
                        E+G    + +H  H+A ++   W P+E  P ++ + S+  +    FK
Sbjct: 84  ------------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131
Query: 860 K 860
           +
Sbjct: 132 E 132

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 93/239 (38%), Gaps = 52/239 (21%)
Query: 602 EVMYLENKTRAQICQLLDKLRLLIDVAW-HLLHESLFGSVADDQKLMIWDTRSHNVSKPS 660
           ++  +E +T   I  L      +  V W H    ++  S + D K++IW   +   S+ +
Sbjct: 36  KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA 95
Query: 661 -HTVDAHTAEVNCLSFNP--YSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNV 717
            H V  H+A VN + + P  Y   +L   S                D K+ + + + +  
Sbjct: 96  VHAV--HSASVNSVQWAPHEYGPLLLVASS----------------DGKVSVVEFKENGT 137
Query: 718 SKPSHTVDAHTAEVNCLSFNPYS------------EYILATGSADKTVALW----DLRNL 761
           + P   +DAH   VN  S+ P +                 TG AD  V +W    D +  
Sbjct: 138 TSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 196
Query: 762 KLKLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818
            L+  + E H D +  V WSP     + LAS   DR   +W          T+D E GP
Sbjct: 197 VLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW----------TQDNEQGP 244

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 744 LATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 801
           LAT S+DKT+ ++++     KL  +   H+  +++V W+ P   TILAS   D ++ +W 
Sbjct: 26  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNIMQKPFK 859
                        E+G    + +H  H+A ++   W P+E  P ++ + S+  +    FK
Sbjct: 86  ------------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133
Query: 860 K 860
           +
Sbjct: 134 E 134

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 674 SFNPYSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNC 733
           SF+ +S+ ILATGS D+            YD   +I      +V   +    AH   +  
Sbjct: 19  SFD-FSQGILATGSTDR----KIKLVSVKYDDFTLI------DVLDET----AHKKAIRS 63
Query: 734 LSFNPYSEYILATGSADKTVALWDL-----RNLKLKLHS-FESHKDEIFQVQWSPHNETI 787
           +++ P++  +LA GS D TV++W       R  ++ L +  E H++E+  V WS ++   
Sbjct: 64  VAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYY 121
Query: 788 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS 847
           LA+   D+ + +W+  + GEE           E + +   H+  +    W+P+E  +  S
Sbjct: 122 LATCSRDKSVWIWETDESGEEY----------ECISVLQEHSQDVKHVIWHPSEALLASS 171
Query: 848 VSEDNI 853
             +D +
Sbjct: 172 SYDDTV 177

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 83/223 (37%), Gaps = 60/223 (26%)
Query: 633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS--EYILATGSADK 690
           H  +  S + D+ + +WD +       +H  + H + V CL    Y   +YI+ TGS D 
Sbjct: 172 HGGILVSGSTDRTVRVWDIKK---GCCTHVFEGHNSTVRCLDIVEYKNIKYIV-TGSRDN 227
Query: 691 TQFXXXXXXXXNYDQKLMIWD----------TRSHNVSKPSHT----------VDAHTAE 730
           T               L +W              H+     HT          +  H A 
Sbjct: 228 T---------------LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 731 VNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 790
           V  +S +     I+ +GS D T+ +WD+   K  L+    H D I+   +  H      S
Sbjct: 273 VRTVSGHGN---IVVSGSYDNTLIVWDVAQXKC-LYILSGHTDRIYSTIYD-HERKRCIS 327
Query: 791 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 833
           +  D  + +WDL            E+G  EL +   GHTA + 
Sbjct: 328 ASXDTTIRIWDL------------ENG--ELXYTLQGHTALVG 356

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 93/239 (38%), Gaps = 52/239 (21%)
Query: 602 EVMYLENKTRAQICQLLDKLRLLIDVAW-HLLHESLFGSVADDQKLMIWDTRSHNVSKPS 660
           ++  +E +T   I  L      +  V W H    ++  S + D K++IW   +   S+ +
Sbjct: 34  KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA 93
Query: 661 -HTVDAHTAEVNCLSFNP--YSEYILATGSADKTQFXXXXXXXXNYDQKLMIWDTRSHNV 717
            H V  H+A VN + + P  Y   +L   S                D K+ + + + +  
Sbjct: 94  VHAV--HSASVNSVQWAPHEYGPLLLVASS----------------DGKVSVVEFKENGT 135
Query: 718 SKPSHTVDAHTAEVNCLSFNPYS------------EYILATGSADKTVALW----DLRNL 761
           + P   +DAH   VN  S+ P +                 TG AD  V +W    D +  
Sbjct: 136 TSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194
Query: 762 KLKLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818
            L+  + E H D +  V WSP     + LAS   DR   +W          T+D E GP
Sbjct: 195 VLE-STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW----------TQDNEQGP 242

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 744 LATGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWD 801
           LAT S+DKT+ ++++     KL  +   H+  +++V W+ P   TILAS   D ++ +W 
Sbjct: 24  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE--PWVICSVSEDNIMQKPFK 859
                        E+G    + +H  H+A ++   W P+E  P ++ + S+  +    FK
Sbjct: 84  ------------EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131
Query: 860 K 860
           +
Sbjct: 132 E 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	860
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.95
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.94
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.94
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.94
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.93
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.93
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.93
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.93
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.93
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.92
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.92
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.92
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.92
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.92
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.92
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.91
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.91
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.91
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.91
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.91
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.91
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.91
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.91
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.9
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.9
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.9
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.9
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.9
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.9
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.9
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.9
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.9
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.9
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.9
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.9
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.9
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.9
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.9
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.89
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.89
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.89
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.89
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.89
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.89
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.89
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.88
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.88
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.88
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.88
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.88
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.88
3jro_A	753	Fusion protein of protein transport protein SEC13	99.88
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.87
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.87
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.87
3jro_A	753	Fusion protein of protein transport protein SEC13	99.87
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.86
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.86
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.86
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.86
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.86
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.86
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.86
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.85
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.85
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.85
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.85
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.85
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.85
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.85
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.85
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.84
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.84
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.84
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.83
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.83
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.83
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.83
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.83
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.83
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.82
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.82
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.82
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.8
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.8
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.78
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.77
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.76
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.76
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.75
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.75
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.73
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.71
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.69
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.68
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.68
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.65
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.63
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.62
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.61
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.59
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.57
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.56
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.55
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.54
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.52
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.52
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.52
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.51
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.49
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.48
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.48
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.48
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.47
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.46
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.44
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.42
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.42
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.38
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.37
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.36
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.35
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.33
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.32
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.3
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.24
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.2
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.2
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.19
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.17
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.17
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.16
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.14
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.12
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.1
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.1
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.1
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.06
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.05
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.05
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.03
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.02
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.99
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.96
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.95
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.93
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.92
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.92
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.91
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.91
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.89
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.89
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.89
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.86
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.83
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.81
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.79
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.77
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.73
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.72
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.71
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.69
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.65
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.65
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.62
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.61
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.59
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.59
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.58
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.56
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.56
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.55
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.51
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.44
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.44
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.33
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.3
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.29
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.19
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.18
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.16
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.09
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.07
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.05
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.01
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.97
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.97
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.94
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.92
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.9
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.9
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.87
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.84
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.76
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.75
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.7
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.7
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.69
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.68
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.66
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.62
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.59
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.59
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.57
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.57
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.56
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.48
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.44
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.44
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.36
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.31
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.24
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.2
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.19
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.13
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.12
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.11
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.06
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.05
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.99
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.98
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.98
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.94
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.89
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.85
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.85
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.76
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.73
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.72
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.69
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.65
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.59
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.58
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.52
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.5
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.39
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.38
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.34
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.3
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.27
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.18
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.17
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.12
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.1
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.08
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.89
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.84
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.74
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.63
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.63
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.56
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.49
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.22
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	94.84
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	94.68
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	93.94
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.81
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.53
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	93.42
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.23
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.22
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.2
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.8
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.56
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.4
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	92.17
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	91.81
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	91.69
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.6
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.47
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	90.95
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.47
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	90.42
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	90.34
3ott_A	758	Two-component system sensor histidine kinase; beta	89.33
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.31
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.24
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	88.81
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	88.49
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	88.14
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	88.07
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	87.25
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	87.24
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	86.72
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	86.59
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	85.66
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	85.15
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	84.49
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	83.9
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	83.75
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	83.56
3ott_A	758	Two-component system sensor histidine kinase; beta	83.54
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	83.46
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	83.15

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=1.1e-28  Score=273.52  Aligned_cols=216  Identities=23%  Similarity=0.328  Sum_probs=181.9

Q ss_pred             EEEeeccchhhhhh-----hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578         603 VMYLENKTRAQICQ-----LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  677 (860)
Q Consensus       603 il~l~n~~~~~l~~-----l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp  677 (860)
                      .+.+|+....+...     ..+|.+.|++++|+| ++++|++|+.||+|++||+.++   +.+..+.+|.+.|++++|+|
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~---~~~~~~~~h~~~V~~~~~~~  179 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQ---VVLSSYRAHAAQVTCVAASP  179 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECS
T ss_pred             EEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCC---cEEEEEcCcCCceEEEEecC
Confidence            45566665544322     236778999999998 7899999999999999999984   66788899999999999999


Q ss_pred             CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee--cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEE
Q psy4578         678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV--DAHTAEVNCLSFNPYSEYILATGSADKTVAL  755 (860)
Q Consensus       678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~--~~h~~~I~sl~~sp~g~~llasgs~Dg~I~I  755 (860)
                      ++..++++|+.||+               |++||++++   +....+  ..|...+.+++|+|++..++++|+.||+|++
T Consensus       180 ~~~~~l~s~s~D~~---------------v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~  241 (344)
T 4gqb_B          180 HKDSVFLSCSEDNR---------------ILLWDTRCP---KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL  241 (344)
T ss_dssp             SCTTEEEEEETTSC---------------EEEEETTSS---SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             CCCCceeeeccccc---------------ccccccccc---ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEE
Confidence            99878999999999               999999987   344433  3456679999999987778999999999999


Q ss_pred             EeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEE
Q psy4578         756 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF  835 (860)
Q Consensus       756 WDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i  835 (860)
                      ||+++++. +..+.+|...|++++|+|+|..+|++|+.||+|++||+.+.+               +....+|.+.|+++
T Consensus       242 wd~~~~~~-~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---------------~~~~~~H~~~V~~v  305 (344)
T 4gqb_B          242 VDTKSTSC-VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---------------LFRSQAHRDFVRDA  305 (344)
T ss_dssp             EESCC--C-CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---------------EEEECCCSSCEEEE
T ss_pred             EECCCCcE-EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---------------EEEEcCCCCCEEEE
Confidence            99999887 888999999999999999997679999999999999987632               33467899999999


Q ss_pred             EEccCCCeEEEEEeCCCeEee
Q psy4578         836 SWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       836 ~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|+|++++++++||.|+.|++
T Consensus       306 ~~sp~~~~llas~s~D~~v~~  326 (344)
T 4gqb_B          306 TWSPLNHSLLTTVGWDHQVVH  326 (344)
T ss_dssp             EECSSSTTEEEEEETTSCEEE
T ss_pred             EEeCCCCeEEEEEcCCCeEEE
Confidence            999999989999999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=9.4e-28  Score=272.10  Aligned_cols=228  Identities=20%  Similarity=0.365  Sum_probs=196.2

Q ss_pred             EEEeeccchhhhhh-hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQICQ-LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~l~~-l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .+.+|+....+... +.+|.+.|.+++|+| ++.+|++|+.||+|++||+.++   ..+..+.+|...|.+++|+|++.+
T Consensus       131 ~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~---~~~~~~~~h~~~V~~v~~~p~~~~  206 (410)
T 1vyh_C          131 TIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGF---ECIRTMHGHDHNVSSVSIMPNGDH  206 (410)
T ss_dssp             CEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSS---CEEECCCCCSSCEEEEEECSSSSE
T ss_pred             eEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC---ceeEEEcCCCCCEEEEEEeCCCCE
Confidence            45566665555444 446778999999998 7889999999999999999873   557788899999999999999985


Q ss_pred             EEEEEeCCCceeeeccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEE
Q psy4578         682 ILATGSADKTQFEVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCL  734 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl  734 (860)
                       +++|+.|++|.+|+....                           ++.|+.|++||+.++   .....+.+|...|.++
T Consensus       207 -l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~---~~~~~~~~h~~~v~~~  282 (410)
T 1vyh_C          207 -IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK---ECKAELREHRHVVECI  282 (410)
T ss_dssp             -EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEE
T ss_pred             -EEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeEecCCCceEEEE
Confidence             899999999999987542                           346889999999886   5667888999999999


Q ss_pred             EEcCC--------------------CCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC
Q psy4578         735 SFNPY--------------------SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD  794 (860)
Q Consensus       735 ~~sp~--------------------g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D  794 (860)
                      +|+|+                    |. ++++|+.||+|++||++++.. +..+.+|...|++++|+|+|++ |++|+.|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~~-~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D  359 (410)
T 1vyh_C          283 SWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHSGGKF-ILSCADD  359 (410)
T ss_dssp             EECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSSC-EEEEETT
T ss_pred             EEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCce-EEEEECCCCcEEEEEEcCCCCE-EEEEeCC
Confidence            99996                    44 599999999999999999886 7888999999999999999986 8899999


Q ss_pred             CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         795 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       795 g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |+|++||+.+.              .++..+.+|...|++++|+|++++ +++|+.|+.|+|
T Consensus       360 ~~i~vwd~~~~--------------~~~~~~~~h~~~v~~l~~~~~~~~-l~sgs~D~~i~v  406 (410)
T 1vyh_C          360 KTLRVWDYKNK--------------RCMKTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVKV  406 (410)
T ss_dssp             TEEEEECCTTS--------------CCCEEEECCSSCEEEEEECSSSSC-EEEEETTSEEEE
T ss_pred             CeEEEEECCCC--------------ceEEEEcCCCCcEEEEEEcCCCCE-EEEEeCCCcEEE
Confidence            99999999773              345566789999999999999995 779999999987

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=7.2e-27  Score=258.78  Aligned_cols=203  Identities=17%  Similarity=0.289  Sum_probs=171.6

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe-eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS-HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~-~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      ..+...|.+++|+| + +.+++|+.||+|+|||+.+++..... ....+|.+.|++++|+|+|++ |++|+.||+     
T Consensus        79 ~~~~~~v~~~~~s~-d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~-l~sgs~d~~-----  150 (344)
T 4gqb_B           79 VQTEAGVADLTWVG-E-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ-AVSGSKDIC-----  150 (344)
T ss_dssp             EEESSCEEEEEEET-T-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSC-----
T ss_pred             eccCCCEEEEEEeC-C-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCE-EEEEeCCCe-----
Confidence            34557899999998 3 56889999999999999986432222 234589999999999999985 899999999     


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe--ccCCCc
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF--ESHKDE  774 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~--~~h~~~  774 (860)
                                |++||+.++   ..+..+.+|...|++++|+|++..++++|+.||+|++||+++++. ...+  ..|...
T Consensus       151 ----------i~iwd~~~~---~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~  216 (344)
T 4gqb_B          151 ----------IKVWDLAQQ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYL  216 (344)
T ss_dssp             ----------EEEEETTTT---EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----CCC
T ss_pred             ----------EEEEECCCC---cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce-eeeeecceeecc
Confidence                      999999987   677889999999999999999987899999999999999998876 4444  345668


Q ss_pred             eEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         775 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      +.+++|+|++..++++|+.||+|++||+++.              .++..+.+|...|++++|+|+|..++++|+.|++|
T Consensus       217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~--------------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i  282 (344)
T 4gqb_B          217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKST--------------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL  282 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEESCC----------------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred             ceeeeecCCCCcceEEeccCCcEEEEECCCC--------------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeE
Confidence            9999999987778999999999999999873              34566778999999999999997678999999999


Q ss_pred             ee
Q psy4578         855 QK  856 (860)
Q Consensus       855 rI  856 (860)
                      +|
T Consensus       283 ~v  284 (344)
T 4gqb_B          283 AV  284 (344)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=1.6e-26  Score=254.92  Aligned_cols=229  Identities=21%  Similarity=0.369  Sum_probs=191.7

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      .+.+|.+.|++++|+| ++.++++|+.||+|++||..++   ..+..+..|...|.+++|+|++++ +++|+.|+.+.+|
T Consensus        50 ~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~d~~v~iw  124 (340)
T 1got_B           50 TLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGNY-VACGGLDNICSIY  124 (340)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC---CEEEEEECSSSCEEEEEECTTSSE-EEEEETTCEEEEE
T ss_pred             eecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC---CcceEeecCCccEEEEEECCCCCE-EEEEeCCCeEEEE
Confidence            3456888999999998 7899999999999999999874   456677889999999999999985 8999999999999


Q ss_pred             ccccc------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEE
Q psy4578         696 EEEEE------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA  745 (860)
Q Consensus       696 ~~~~~------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~lla  745 (860)
                      +....                              ++.|+.|++||+.++   ..+..+.+|.+.|.+++|+|++. +++
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~  200 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG---QQTTTFTGHTGDVMSLSLAPDTR-LFV  200 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC---cEEEEEcCCCCceEEEEECCCCC-EEE
Confidence            76431                              245889999999987   66778889999999999999998 599


Q ss_pred             EeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc-----------
Q psy4578         746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA-----------  814 (860)
Q Consensus       746 sgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~-----------  814 (860)
                      +|+.||.|++||++++.. ...+.+|...|++++|+|++.. |++|+.||+|++||+++..........           
T Consensus       201 sg~~d~~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~  278 (340)
T 1got_B          201 SGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF  278 (340)
T ss_dssp             EEETTSCEEEEETTTCSE-EEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             EEeCCCcEEEEECCCCee-EEEEcCCcCCEEEEEEcCCCCE-EEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEE
Confidence            999999999999999886 7889999999999999999985 899999999999999875432211100           


Q ss_pred             -cC------------------CCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         815 -ED------------------GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       815 -~~------------------~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                       .+                  .....+..+.+|.+.|++++|+|+|.+ +++|+.|+.|+|
T Consensus       279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~-l~s~s~D~~i~i  338 (340)
T 1got_B          279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA-VATGSWDSFLKI  338 (340)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEE
T ss_pred             CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCE-EEEEcCCccEEe
Confidence             00                  122345566789999999999999985 779999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.6e-26  Score=253.09  Aligned_cols=216  Identities=21%  Similarity=0.366  Sum_probs=186.7

Q ss_pred             eeEEEEeeccchhhhhh-hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578         600 IEEVMYLENKTRAQICQ-LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  678 (860)
Q Consensus       600 l~~il~l~n~~~~~l~~-l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~  678 (860)
                      ....+.+|+....+... +..+...+.+++|+| ++.++++|+.||.|++|++.++   .....+..|...|.+++|+|+
T Consensus       100 ~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~---~~~~~~~~~~~~v~~~~~spd  175 (321)
T 3ow8_A          100 LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYSPD  175 (321)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTC---SEEEEEECSSSCEEEEEECTT
T ss_pred             CCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCC---ceeEEecCCCceEEEEEECCC
Confidence            33456667665554433 345567899999998 7889999999999999999885   445667788899999999999


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL  758 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl  758 (860)
                      +++ +++|+.||.               |++||++++   +.+..+.+|...|++++|+|++. +|++|+.||.|++||+
T Consensus       176 g~~-lasg~~dg~---------------i~iwd~~~~---~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~  235 (321)
T 3ow8_A          176 GKY-LASGAIDGI---------------INIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDV  235 (321)
T ss_dssp             SSE-EEEEETTSC---------------EEEEETTTT---EEEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEET
T ss_pred             CCE-EEEEcCCCe---------------EEEEECCCC---cEEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEEC
Confidence            995 899999998               999999887   66778889999999999999999 5999999999999999


Q ss_pred             CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc
Q psy4578         759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN  838 (860)
Q Consensus       759 ~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s  838 (860)
                      ++... ...+.+|...|.+++|+|++++ |++|+.||+|++||+.+              ..++..+.+|.+.|++++|+
T Consensus       236 ~~~~~-~~~~~~h~~~v~~~~~sp~~~~-l~s~s~D~~v~iwd~~~--------------~~~~~~~~~h~~~v~~v~~s  299 (321)
T 3ow8_A          236 QHANL-AGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVWDVGT--------------RTCVHTFFDHQDQVWGVKYN  299 (321)
T ss_dssp             TTCCE-EEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEEC
T ss_pred             CCcce-eEEEcCCCCceEEEEECCCCCE-EEEEeCCCcEEEEeCCC--------------CEEEEEEcCCCCcEEEEEEC
Confidence            98886 7888999999999999999985 89999999999999987              34567778899999999999


Q ss_pred             cCCCeEEEEEeCCCeEee
Q psy4578         839 PNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       839 pdg~~Llasgs~Dg~IrI  856 (860)
                      |+|.+ +++++.|+.|++
T Consensus       300 ~~g~~-l~s~~~d~~i~v  316 (321)
T 3ow8_A          300 GNGSK-IVSVGDDQEIHI  316 (321)
T ss_dssp             TTSSE-EEEEETTCCEEE
T ss_pred             CCCCE-EEEEeCCCeEEE
Confidence            99995 779999999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=2e-26  Score=256.25  Aligned_cols=217  Identities=18%  Similarity=0.281  Sum_probs=178.0

Q ss_pred             EEEeeccchhhhhh-----hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578         603 VMYLENKTRAQICQ-----LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  677 (860)
Q Consensus       603 il~l~n~~~~~l~~-----l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp  677 (860)
                      .+.+|+....+...     ..+|.+.|++++|+| ++.+|++|+.||.|++||+.++   ..+..+.+|...|++++|++
T Consensus       116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~  191 (357)
T 4g56_B          116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQK---AVLKSYNAHSSEVNCVAACP  191 (357)
T ss_dssp             CEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECT
T ss_pred             EEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCCCEEEEEEcc
Confidence            35566655444222     235678899999998 7899999999999999999884   56778889999999999999


Q ss_pred             CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578         678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD  757 (860)
Q Consensus       678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD  757 (860)
                      ++..++++++.||+               |++||+++++.. .......|...+.+++|+|++..++++|+.|+.|++||
T Consensus       192 ~~~~~~~s~~~dg~---------------v~~wd~~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd  255 (357)
T 4g56_B          192 GKDTIFLSCGEDGR---------------ILLWDTRKPKPA-TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVN  255 (357)
T ss_dssp             TCSSCEEEEETTSC---------------EEECCTTSSSCB-CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEE
T ss_pred             CCCceeeeeccCCc---------------eEEEECCCCcee-eeeeeccccccccchhhhhcccceEEEeecccceeEEE
Confidence            98877999999999               999999887432 22234567788999999999877899999999999999


Q ss_pred             CCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578         758 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  837 (860)
Q Consensus       758 l~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~  837 (860)
                      ++++.. +..+.+|...|++++|+|++..+|++|+.||+|++||+++++              ++ ...+|.+.|++++|
T Consensus       256 ~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~--------------~~-~~~~H~~~V~~vaf  319 (357)
T 4g56_B          256 IKNPDS-AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE--------------VF-RDLSHRDFVTGVAW  319 (357)
T ss_dssp             SSCGGG-CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE--------------EE-EECCCSSCEEEEEE
T ss_pred             CCCCcE-eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc--------------Ee-EECCCCCCEEEEEE
Confidence            999886 788999999999999999987679999999999999998732              22 33479999999999


Q ss_pred             cc-CCCeEEEEEeCCCeEee
Q psy4578         838 NP-NEPWVICSVSEDNIMQK  856 (860)
Q Consensus       838 sp-dg~~Llasgs~Dg~IrI  856 (860)
                      +| ++. ++++|+.||.|++
T Consensus       320 sP~d~~-~l~s~s~Dg~v~i  338 (357)
T 4g56_B          320 SPLDHS-KFTTVGWDHKVLH  338 (357)
T ss_dssp             CSSSTT-EEEEEETTSCEEE
T ss_pred             eCCCCC-EEEEEcCCCeEEE
Confidence            99 666 6889999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=2.1e-26  Score=261.03  Aligned_cols=216  Identities=22%  Similarity=0.350  Sum_probs=190.7

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      ..+.+|.++|++++|+| ++.++++|+.||+|++||+.++   .....+.+|...|++++|+|++. ++++|+.||+|.+
T Consensus       102 ~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~---~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i~i  176 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKL  176 (410)
T ss_dssp             CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTC---CCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCCCE
T ss_pred             EeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---cEEEEEeccCCcEEEEEEcCCCC-EEEEEeCCCeEEE
Confidence            34567889999999999 7889999999999999999985   45678889999999999999998 5999999999999


Q ss_pred             eccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEe
Q psy4578         695 VEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG  747 (860)
Q Consensus       695 ~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasg  747 (860)
                      |+....                           ++.|+.|++||++++   ..+..+.+|...|.++.|+|++. ++++|
T Consensus       177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~g~-~l~s~  252 (410)
T 1vyh_C          177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQDGT-LIASC  252 (410)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred             EeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEeCCCccEEEEEECCCCC-EEEEE
Confidence            976542                           346889999999987   66778899999999999999999 59999


Q ss_pred             eCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCC--------------------CCCEEEEEECCCcEEEEECCCCCc
Q psy4578         748 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH--------------------NETILASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       748 s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~--------------------g~~lL~tgs~Dg~I~iWdl~~~~~  807 (860)
                      +.||+|++||+++... ...+.+|...|.+++|+|+                    |. ++++|+.||+|++||++++  
T Consensus       253 s~D~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~--  328 (410)
T 1vyh_C          253 SNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTG--  328 (410)
T ss_dssp             ETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTT--
T ss_pred             cCCCeEEEEECCCCce-eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCC--
Confidence            9999999999999886 7788899999999999996                    44 5899999999999999873  


Q ss_pred             ccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         808 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       808 ~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                                  .++..+.+|.+.|++++|+|+|++ +++|+.|+.|++
T Consensus       329 ------------~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~~i~v  364 (410)
T 1vyh_C          329 ------------MCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRV  364 (410)
T ss_dssp             ------------EEEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEE
T ss_pred             ------------ceEEEEECCCCcEEEEEEcCCCCE-EEEEeCCCeEEE
Confidence                        456677789999999999999996 679999999986

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.95  E-value=2.9e-26  Score=248.69  Aligned_cols=217  Identities=19%  Similarity=0.328  Sum_probs=181.5

Q ss_pred             EEEEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         602 EVMYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       602 ~il~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      ..+.+|+...... ..+..|...|.+++|+| +++++++|+.||+|++||+.++   ..+..+.+|...|++++|+|+++
T Consensus        35 g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~  110 (304)
T 2ynn_A           35 GRVELWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTG---EKVVDFEAHPDYIRSIAVHPTKP  110 (304)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSSS
T ss_pred             CcEEEEECCCCceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECCCC---cEEEEEeCCCCcEEEEEEcCCCC
Confidence            3455666655543 33445678899999998 7899999999999999999885   55677889999999999999998


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN  760 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~  760 (860)
                      + +++|+.||+               |++||++++.  .....+.+|...|.+++|+|++..++++|+.||+|++||++.
T Consensus       111 ~-l~sgs~D~~---------------v~lWd~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          111 Y-VLSGSDDLT---------------VKLWNWENNW--ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             E-EEEEETTSC---------------EEEEEGGGTT--EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred             E-EEEECCCCe---------------EEEEECCCCc--chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence            5 899999999               9999998752  344567899999999999996544699999999999999988


Q ss_pred             CceeeEEeccCCCceEEEEEcC--CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc
Q psy4578         761 LKLKLHSFESHKDEIFQVQWSP--HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN  838 (860)
Q Consensus       761 ~~~~~~~~~~h~~~V~~l~fsp--~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s  838 (860)
                      .........+|...+..+.|+|  ++. +|++|+.||+|++||+++              ..++..+.+|...|.+++|+
T Consensus       173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~--------------~~~~~~~~~h~~~v~~~~~~  237 (304)
T 2ynn_A          173 STPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQT--------------KSCVATLEGHMSNVSFAVFH  237 (304)
T ss_dssp             SSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEETTT--------------TEEEEEEECCSSCEEEEEEC
T ss_pred             CCccceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCC--------------CccceeeCCCCCCEEEEEEC
Confidence            7764444556778899999987  555 589999999999999987              34567778999999999999


Q ss_pred             cCCCeEEEEEeCCCeEee
Q psy4578         839 PNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       839 pdg~~Llasgs~Dg~IrI  856 (860)
                      |+++ ++++|+.||.|++
T Consensus       238 p~~~-~l~s~s~Dg~i~i  254 (304)
T 2ynn_A          238 PTLP-IIISGSEDGTLKI  254 (304)
T ss_dssp             SSSS-EEEEEETTSCEEE
T ss_pred             CCCC-EEEEEcCCCeEEE
Confidence            9999 5889999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=3e-26  Score=250.97  Aligned_cols=217  Identities=20%  Similarity=0.320  Sum_probs=186.0

Q ss_pred             hhhcccceeeeEeecc---CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         617 LLDKLRLLIDVAWHLL---HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~---~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      ..+|.+.|++++|+|+   ++.+|++|+.||+|++|++.++.. .....+.+|...|.+++|++++. ++++|+.|+++.
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~-~l~s~s~D~~i~  105 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIR  105 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS-EEEEEETTSEEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC-EEEEEeCCCcEE
Confidence            4568899999999974   467899999999999999976421 33456789999999999999998 599999999999


Q ss_pred             eeccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEE
Q psy4578         694 EVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT  746 (860)
Q Consensus       694 ~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llas  746 (860)
                      +|+....                           +..+|.|++||+.++   .....+..|...|.+++|+|++.+ +++
T Consensus       106 lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~---~~~~~~~~~~~~v~~~~~spdg~~-las  181 (321)
T 3ow8_A          106 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYSPDGKY-LAS  181 (321)
T ss_dssp             EEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC---SEEEEEECSSSCEEEEEECTTSSE-EEE
T ss_pred             EEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC---ceeEEecCCCceEEEEEECCCCCE-EEE
Confidence            9987543                           245789999999887   566777889999999999999995 999


Q ss_pred             eeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec
Q psy4578         747 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG  826 (860)
Q Consensus       747 gs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~  826 (860)
                      |+.||.|++||+++++. +..+.+|...|++++|+|+++. |++|+.||.|++||+++.              .....+.
T Consensus       182 g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~spd~~~-l~s~s~dg~i~iwd~~~~--------------~~~~~~~  245 (321)
T 3ow8_A          182 GAIDGIINIFDIATGKL-LHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHA--------------NLAGTLS  245 (321)
T ss_dssp             EETTSCEEEEETTTTEE-EEEECCCSSCCCEEEECTTSCE-EEEECTTSCEEEEETTTC--------------CEEEEEC
T ss_pred             EcCCCeEEEEECCCCcE-EEEEcccCCceeEEEEcCCCCE-EEEEcCCCeEEEEECCCc--------------ceeEEEc
Confidence            99999999999999886 7889999999999999999985 899999999999999873              3456678


Q ss_pred             CccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         827 GHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       827 ~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|...|.+++|+|++.+ +++++.|+.|+|
T Consensus       246 ~h~~~v~~~~~sp~~~~-l~s~s~D~~v~i  274 (321)
T 3ow8_A          246 GHASWVLNVAFCPDDTH-FVSSSSDKSVKV  274 (321)
T ss_dssp             CCSSCEEEEEECTTSSE-EEEEETTSCEEE
T ss_pred             CCCCceEEEEECCCCCE-EEEEeCCCcEEE
Confidence            89999999999999995 779999999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=3.4e-26  Score=260.81  Aligned_cols=229  Identities=69%  Similarity=1.074  Sum_probs=193.8

Q ss_pred             hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc----cCeeeccCCCCCeeEEEEccCCCeEEEEEeC
Q psy4578         613 QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS----KPSHTVDAHTAEVNCLSFNPYSEYILATGSA  688 (860)
Q Consensus       613 ~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~----~~~~~~~~h~~~V~~l~~sp~g~~llasgs~  688 (860)
                      .+..+..|.+.|++++|+|.+..+|++|+.||.|++|++.++...    .....+.+|...|.+++|+|++..++++|+.
T Consensus       173 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~  252 (430)
T 2xyi_A          173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD  252 (430)
T ss_dssp             CSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred             CcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC
Confidence            344455777899999999955559999999999999999874321    1245667899999999999976668999999


Q ss_pred             CCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe
Q psy4578         689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF  768 (860)
Q Consensus       689 Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~  768 (860)
                      ||.               |++||++++.....+..+..|...|++++|+|++.+++++|+.||.|++||+++...++..+
T Consensus       253 dg~---------------i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~  317 (430)
T 2xyi_A          253 DQK---------------LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF  317 (430)
T ss_dssp             TSE---------------EEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred             CCe---------------EEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe
Confidence            998               99999998754456777789999999999999999889999999999999999866568888


Q ss_pred             ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578         769 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       769 ~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                      .+|...|++++|+|+++.++++|+.||.|++||+..............++..++..+.+|...|++++|+|+++++++++
T Consensus       318 ~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~  397 (430)
T 2xyi_A          318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV  397 (430)
T ss_dssp             ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE
T ss_pred             ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE
Confidence            99999999999999998889999999999999998855443333333455678888999999999999999999889999


Q ss_pred             eCCCeEee
Q psy4578         849 SEDNIMQK  856 (860)
Q Consensus       849 s~Dg~IrI  856 (860)
                      +.||.|+|
T Consensus       398 s~dg~i~i  405 (430)
T 2xyi_A          398 SEDNIMQV  405 (430)
T ss_dssp             ETTSEEEE
T ss_pred             ECCCCEEE
Confidence            99999886

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.94  E-value=2.8e-25  Score=240.88  Aligned_cols=222  Identities=18%  Similarity=0.286  Sum_probs=182.6

Q ss_pred             eEEEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578         601 EEVMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       601 ~~il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  679 (860)
                      ...+.+|+....+ +..+..|.+.|.+++|+| ++.++++|+.||+|++||+.++  ......+.+|...|.+++|+|++
T Consensus        76 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~--~~~~~~~~~h~~~v~~v~~~p~~  152 (304)
T 2ynn_A           76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKD  152 (304)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGT--TEEEEEECCCCSCEEEEEECTTC
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCC--cchhhhhcccCCcEEEEEECCCC
Confidence            3445566665544 444556778999999998 7889999999999999999874  23456778999999999999965


Q ss_pred             CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC--CCCcEEEEeeCCCcEEEEe
Q psy4578         680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP--YSEYILATGSADKTVALWD  757 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp--~g~~llasgs~Dg~I~IWD  757 (860)
                      ..++++|+.||+               |++||+++..  .......+|...+..++|+|  ++. ++++|+.||+|++||
T Consensus       153 ~~~l~sgs~D~~---------------v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd  214 (304)
T 2ynn_A          153 PSTFASGCLDRT---------------VKVWSLGQST--PNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWD  214 (304)
T ss_dssp             TTEEEEEETTSE---------------EEEEETTCSS--CSEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEE
T ss_pred             CCEEEEEeCCCe---------------EEEEECCCCC--ccceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEe
Confidence            446999999999               9999998763  22333346778899999987  555 599999999999999


Q ss_pred             CCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578         758 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  837 (860)
Q Consensus       758 l~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~  837 (860)
                      ++++.. +..+.+|...|.+++|+|+++ +|++|+.||+|++||+.+.              .+...+..|...+.+++|
T Consensus       215 ~~~~~~-~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~--------------~~~~~~~~~~~~~~~~~~  278 (304)
T 2ynn_A          215 YQTKSC-VATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY--------------KVEKTLNVGLERSWCIAT  278 (304)
T ss_dssp             TTTTEE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC--------------CEEEEECCSSSSEEEEEE
T ss_pred             CCCCcc-ceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCC--------------ceeeeccCCCccEEEEEE
Confidence            999887 888999999999999999998 5899999999999999873              455667788899999999


Q ss_pred             ccCCCe-EEEEEeCCCeEeeccC
Q psy4578         838 NPNEPW-VICSVSEDNIMQKPFK  859 (860)
Q Consensus       838 spdg~~-Llasgs~Dg~IrI~f~  859 (860)
                      +|++.. ++++|++||.+.+.+.
T Consensus       279 ~~~~~~~~~asg~~~g~~~~~~~  301 (304)
T 2ynn_A          279 HPTGRKNYIASGFDNGFTVLSLG  301 (304)
T ss_dssp             CTTCGGGCEEEEETTEEEEEECC
T ss_pred             CCCCCceEEEEecCCceEEEEec
Confidence            998853 4889999999887653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=3.7e-25  Score=239.11  Aligned_cols=215  Identities=22%  Similarity=0.345  Sum_probs=171.4

Q ss_pred             hhhhhhcccceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCC
Q psy4578         614 ICQLLDKLRLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADK  690 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg  690 (860)
                      +..+.+|.+.|.+++|++. ++.+|++|+.||+|++||+.++.. ..+..+.+|...|.+++|+|+  +. ++++|+.||
T Consensus        46 ~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~  123 (297)
T 2pm7_B           46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDG  123 (297)
T ss_dssp             CEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB-CCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTS
T ss_pred             EEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce-EEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCC
Confidence            4455678899999999863 478999999999999999987532 345567789999999999997  66 589999999


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCC------------CcEEEEeeCCCcEEEEeC
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS------------EYILATGSADKTVALWDL  758 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g------------~~llasgs~Dg~I~IWDl  758 (860)
                      +               |++||+++... .....+.+|...|.+++|+|++            ..+|++|+.||+|++||+
T Consensus       124 ~---------------v~~wd~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~  187 (297)
T 2pm7_B          124 K---------------VSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY  187 (297)
T ss_dssp             E---------------EEEEEBCSSSC-BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEE
T ss_pred             c---------------EEEEEecCCCc-eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEE
Confidence            8               99999987532 1235678899999999999973            236999999999999999


Q ss_pred             CCCce---eeEEeccCCCceEEEEEcCCC--CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceE
Q psy4578         759 RNLKL---KLHSFESHKDEIFQVQWSPHN--ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS  833 (860)
Q Consensus       759 ~~~~~---~~~~~~~h~~~V~~l~fsp~g--~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~  833 (860)
                      ++...   ....+.+|...|.+++|+|++  ..+|++|+.|++|++||++.......         .......+|...|.
T Consensus       188 ~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~---------~~~~~~~~~~~~v~  258 (297)
T 2pm7_B          188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK---------KTLLKEEKFPDVLW  258 (297)
T ss_dssp             ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE---------EEESSSSCCSSCEE
T ss_pred             cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccc---------eeeeecccCCCcEE
Confidence            87652   256788999999999999986  34699999999999999876321100         00111146788999


Q ss_pred             EEEEccCCCeEEEEEeCCCeEee
Q psy4578         834 DFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       834 ~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +++|+|+|++ +++++.|+.|++
T Consensus       259 ~~~~s~~g~~-las~~~D~~v~l  280 (297)
T 2pm7_B          259 RASWSLSGNV-LALSGGDNKVTL  280 (297)
T ss_dssp             EEEECSSSCC-EEEEETTSCEEE
T ss_pred             EEEECCCCCE-EEEEcCCCcEEE
Confidence            9999999995 779999999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.94  E-value=2e-25  Score=246.64  Aligned_cols=218  Identities=23%  Similarity=0.414  Sum_probs=177.2

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      .+|.+.|.+++|+| ++.+|++|+.||+|++|+...+. ...+..+.+|...|.+++|+|++++ |++|+.|++      
T Consensus        58 ~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~~-l~s~s~D~~------  128 (345)
T 3fm0_A           58 EGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGNL-LATCSRDKS------  128 (345)
T ss_dssp             SSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSC------
T ss_pred             cccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCCE-EEEEECCCe------
Confidence            46778999999999 78999999999999999998643 2456778899999999999999984 999999999      


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-eeEEeccCCCceE
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-KLHSFESHKDEIF  776 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~h~~~V~  776 (860)
                               |++||+.+......+..+.+|...|.+++|+|++.+ |++|+.||+|++||.++... ....+.+|...|+
T Consensus       129 ---------v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~  198 (345)
T 3fm0_A          129 ---------VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL-LASASYDDTVKLYREEEDDWVCCATLEGHESTVW  198 (345)
T ss_dssp             ---------EEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC-EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred             ---------EEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE-EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceE
Confidence                     999999876443456678899999999999999995 99999999999999988753 2567889999999


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc-cCCCCccEEEecC-ccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA-EDGPPELLFIHGG-HTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~-~~~~~~~i~~~~~-h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      +++|+|+|++ |++|+.||+|++||............. ......++....+ |...|.+++|+|++.. +++++.|+.|
T Consensus       199 ~l~~sp~g~~-l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i  276 (345)
T 3fm0_A          199 SLAFDPSGQR-LASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA-LATACGDDAI  276 (345)
T ss_dssp             EEEECTTSSE-EEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC-EEEEETTSCE
T ss_pred             EEEECCCCCE-EEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE-EEEEeCCCeE
Confidence            9999999985 899999999999997543322221110 0111233444444 8899999999999995 7788999998


Q ss_pred             ee
Q psy4578         855 QK  856 (860)
Q Consensus       855 rI  856 (860)
                      ++
T Consensus       277 ~v  278 (345)
T 3fm0_A          277 RV  278 (345)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.94  E-value=8.2e-26  Score=249.80  Aligned_cols=207  Identities=24%  Similarity=0.414  Sum_probs=173.5

Q ss_pred             hhhccc-ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         617 LLDKLR-LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       617 l~~~~~-~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      +.+|.+ .|.+++|+| ++.+|++|+.||+|+|||+.++..........+|...|++++|+|++++ |++|+.|++    
T Consensus        11 ~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~s~D~~----   84 (345)
T 3fm0_A           11 VPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY-LASASFDAT----   84 (345)
T ss_dssp             ECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSE-EEEEETTSC----
T ss_pred             ecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCE-EEEEECCCc----
Confidence            345665 899999999 7889999999999999999875321122234689999999999999985 899999999    


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce--eeEEeccCCC
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL--KLHSFESHKD  773 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~--~~~~~~~h~~  773 (860)
                                 +++||+..+.. ..+..+.+|...|.+++|+|++. +|++|+.||+|++||+++...  .+..+.+|..
T Consensus        85 -----------v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~  151 (345)
T 3fm0_A           85 -----------TCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ  151 (345)
T ss_dssp             -----------EEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred             -----------EEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence                       99999876521 34667889999999999999998 499999999999999987642  2566788999


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                      .|.+++|+|+++. |++|+.||.|++||.....            ..+...+.+|...|++++|+|+|++ +++|+.|++
T Consensus       152 ~v~~~~~~p~~~~-l~s~s~d~~i~~w~~~~~~------------~~~~~~~~~h~~~v~~l~~sp~g~~-l~s~s~D~~  217 (345)
T 3fm0_A          152 DVKHVVWHPSQEL-LASASYDDTVKLYREEEDD------------WVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRT  217 (345)
T ss_dssp             CEEEEEECSSSSC-EEEEETTSCEEEEEEETTE------------EEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSC
T ss_pred             CeEEEEECCCCCE-EEEEeCCCcEEEEEecCCC------------EEEEEEecCCCCceEEEEECCCCCE-EEEEeCCCe
Confidence            9999999999986 8999999999999987632            1245667899999999999999994 789999999


Q ss_pred             Eee
Q psy4578         854 MQK  856 (860)
Q Consensus       854 IrI  856 (860)
                      |+|
T Consensus       218 v~i  220 (345)
T 3fm0_A          218 VRI  220 (345)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.94  E-value=2.3e-25  Score=242.99  Aligned_cols=225  Identities=17%  Similarity=0.289  Sum_probs=175.3

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc--ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV--SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      +.+|.+.|++++|+|+++++|+||+.||+|+|||+.+.+.  ..+...+.+|...|.+++|+|++.+ +++|+.|+.+.+
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~-l~s~~~d~~i~~  112 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF-ALSGSWDGTLRL  112 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCE-EEEEcccccceE
Confidence            5678899999999997789999999999999999986532  2345677899999999999999985 888888888776


Q ss_pred             eccccc---------------------------c---------------------------------------------c
Q psy4578         695 VEEEEE---------------------------E---------------------------------------------N  702 (860)
Q Consensus       695 ~~~~~~---------------------------~---------------------------------------------~  702 (860)
                      |.....                           +                                             .
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~  192 (340)
T 4aow_A          113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG  192 (340)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence            654432                           1                                             1


Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  782 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp  782 (860)
                      .++.|++||++++   .....+.+|.+.|++++|+|++. +|++|+.||.|++||+++... +..+. +...|.+++|+|
T Consensus       193 ~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~-~~~~~-~~~~v~~~~~~~  266 (340)
T 4aow_A          193 WDKLVKVWNLANC---KLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKH-LYTLD-GGDIINALCFSP  266 (340)
T ss_dssp             TTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEE-EEEEE-CSSCEEEEEECS
T ss_pred             CCCEEEEEECCCC---ceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCce-eeeec-CCceEEeeecCC
Confidence            2445666666554   45566788999999999999999 599999999999999999876 66666 456899999999


Q ss_pred             CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         783 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       783 ~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++.  +++++.|+.|++||+++.........     ........+|...|++++|+|+|++ +++|+.||.|+|
T Consensus       267 ~~~--~~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~Dg~v~i  332 (340)
T 4aow_A          267 NRY--WLCAATGPSIKIWDLEGKIIVDELKQ-----EVISTSSKAEPPQCTSLAWSADGQT-LFAGYTDNLVRV  332 (340)
T ss_dssp             SSS--EEEEEETTEEEEEETTTTEEEEEECC-----C-------CCCCCEEEEEECTTSSE-EEEEETTSCEEE
T ss_pred             CCc--eeeccCCCEEEEEECCCCeEEEeccc-----cceeeeccCCCCCEEEEEECCCCCE-EEEEeCCCEEEE
Confidence            885  56777899999999987544332211     1223345578999999999999995 779999999986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=4.5e-25  Score=248.37  Aligned_cols=209  Identities=22%  Similarity=0.368  Sum_probs=175.7

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc--
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE--  700 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~--  700 (860)
                      .|.+++|+| ++.+|++|+.||.|++||+.++   +.+..+.+|...|.+++|+|++.. +++|+.|+++.+|+....  
T Consensus       125 ~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~~~~~~  199 (393)
T 1erj_A          125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQC  199 (393)
T ss_dssp             BEEEEEECT-TSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEE
T ss_pred             eEEEEEECC-CCCEEEEEcCCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEECCCCee
Confidence            489999998 7899999999999999999874   556778899999999999999985 899999999999986542  


Q ss_pred             -------------------------ccCCCcEEEEeCCCCCCCCCeeee-------cCCCCCeEEEEEcCCCCcEEEEee
Q psy4578         701 -------------------------ENYDQKLMIWDTRSHNVSKPSHTV-------DAHTAEVNCLSFNPYSEYILATGS  748 (860)
Q Consensus       701 -------------------------~~~dg~I~iwDl~~~~~~~~~~~~-------~~h~~~I~sl~~sp~g~~llasgs  748 (860)
                                               ++.|+.|++||++++   ..+..+       .+|...|.+++|+|+|.+ +++|+
T Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s  275 (393)
T 1erj_A          200 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG---FLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGS  275 (393)
T ss_dssp             EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC---CEEEEEC------CCCSSCEEEEEECTTSSE-EEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC---cEEEeecccccCCCCCCCCEEEEEECCCCCE-EEEEe
Confidence                                     245789999999886   333333       579999999999999995 89999


Q ss_pred             CCCcEEEEeCCCCce-----------eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCC
Q psy4578         749 ADKTVALWDLRNLKL-----------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG  817 (860)
Q Consensus       749 ~Dg~I~IWDl~~~~~-----------~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~  817 (860)
                      .||.|++||+++...           ....+.+|...|.+++|+|++.+ |++|+.||.|++||+.++            
T Consensus       276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~iwd~~~~------------  342 (393)
T 1erj_A          276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKSG------------  342 (393)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTTC------------
T ss_pred             CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCE-EEEEeCCCeEEEEECCCC------------
Confidence            999999999976421           24567789999999999999985 899999999999998873            


Q ss_pred             CCccEEEecCccCceEEEEEcc------CCCeEEEEEeCCCeEee
Q psy4578         818 PPELLFIHGGHTAKISDFSWNP------NEPWVICSVSEDNIMQK  856 (860)
Q Consensus       818 ~~~~i~~~~~h~~~I~~i~~sp------dg~~Llasgs~Dg~IrI  856 (860)
                        .++..+.+|.+.|.+++|++      ++. ++++|+.||.|+|
T Consensus       343 --~~~~~l~~h~~~v~~v~~~~~~~~~p~~~-~l~sgs~Dg~i~i  384 (393)
T 1erj_A          343 --NPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARI  384 (393)
T ss_dssp             --CEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEE
T ss_pred             --eEEEEECCCCCCEEEEEecCCcCcCCCCC-EEEEECCCCcEEE
Confidence              34567779999999999987      456 6889999999987

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.94  E-value=3.4e-25  Score=264.36  Aligned_cols=244  Identities=17%  Similarity=0.257  Sum_probs=191.2

Q ss_pred             EEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .+.+|+..... ...+.+|.+.|++++|+| ++.++|+|+.||+|+|||+.++.. .....+.+|.+.|.+++|+|+++.
T Consensus        40 ~v~l~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~-~~~~~~~~~~~~v~~v~fs~dg~~  117 (611)
T 1nr0_A           40 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTH-ILKTTIPVFSGPVKDISWDSESKR  117 (611)
T ss_dssp             EEEEEETTCSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTC-CEEEEEECSSSCEEEEEECTTSCE
T ss_pred             EEEEecCCCcccCeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcc-eeeEeecccCCceEEEEECCCCCE
Confidence            45566665444 344557888999999999 889999999999999999975432 234567789999999999999996


Q ss_pred             EEEEEeCC----Cceeeecccc--------------------------cccCCCcEEEEeCCCCCCCCCeeeecCCCCCe
Q psy4578         682 ILATGSAD----KTQFEVEEEE--------------------------EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEV  731 (860)
Q Consensus       682 llasgs~D----g~i~~~~~~~--------------------------~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I  731 (860)
                       +++++.+    +.+++|+...                          .++.|+.|++||..+.   +....+.+|...|
T Consensus       118 -l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~---~~~~~l~~H~~~V  193 (611)
T 1nr0_A          118 -IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFV  193 (611)
T ss_dssp             -EEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB---EEEEEECCCSSCE
T ss_pred             -EEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC---eEeeeeccccCce
Confidence             5555543    4677775321                          1346889999998765   5667889999999


Q ss_pred             EEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec-------cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         732 NCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE-------SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       732 ~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~-------~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      .+++|+|+|. +|++|+.||+|++||+.++.. ...+.       +|.+.|.+++|+|+|++ |++|+.|++|++||+.+
T Consensus       194 ~~v~fspdg~-~las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~~-l~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          194 HSVRYNPDGS-LFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVAT  270 (611)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTT
T ss_pred             EEEEECCCCC-EEEEEECCCcEEEEECCCCcE-eeeeccccccccccCCCEEEEEECCCCCE-EEEEeCCCeEEEEeCCC
Confidence            9999999999 599999999999999998876 55563       79999999999999985 89999999999999988


Q ss_pred             CCccccccccc-----------------------------CCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         805 IGEEQSTEDAE-----------------------------DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       805 ~~~~~~~~~~~-----------------------------~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      ...........                             ...........+|...|++++|+|+|++ +++++.|+.|+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-l~s~s~D~~v~  349 (611)
T 1nr0_A          271 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-LFSADAEGHIN  349 (611)
T ss_dssp             TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEE
T ss_pred             CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-EEEEeCCCcEE
Confidence            65443221100                             0012244566789999999999999995 77999999998


Q ss_pred             e
Q psy4578         856 K  856 (860)
Q Consensus       856 I  856 (860)
                      +
T Consensus       350 ~  350 (611)
T 1nr0_A          350 S  350 (611)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=8.8e-26  Score=253.00  Aligned_cols=253  Identities=18%  Similarity=0.247  Sum_probs=194.6

Q ss_pred             eeeecceeecccceeEEEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCC----cccCee
Q psy4578         587 NFFKQGYFKGTHHIEEVMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN----VSKPSH  661 (860)
Q Consensus       587 ~ll~~G~~~Gs~~l~~il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~----~~~~~~  661 (860)
                      .+...|.+..+......+.+|+....+ ...+..|...|.+++|+| ++.++++|+.|+.|++||+.+..    ......
T Consensus        73 ~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~  151 (380)
T 3iz6_a           73 DWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVSR  151 (380)
T ss_dssp             EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCCccccCCcccee
Confidence            333334333333333445666655444 344456778899999998 78999999999999999997532    123445


Q ss_pred             eccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc---------------------------------ccCCCcEE
Q psy4578         662 TVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE---------------------------------ENYDQKLM  708 (860)
Q Consensus       662 ~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~---------------------------------~~~dg~I~  708 (860)
                      .+.+|.+.|.++.|+|++...+++|+.|+++.+|+....                                 ++.|+.|+
T Consensus       152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~  231 (380)
T 3iz6_a          152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR  231 (380)
T ss_dssp             BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred             eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence            678999999999999987667999999999999976421                                 24588999


Q ss_pred             EEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC-------CceEEEEEc
Q psy4578         709 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK-------DEIFQVQWS  781 (860)
Q Consensus       709 iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~-------~~V~~l~fs  781 (860)
                      +||++...  ..+..+.+|.+.|++++|+|++.+ |++|+.||+|++||++++.. +..+..+.       ..|++++|+
T Consensus       232 ~wd~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s  307 (380)
T 3iz6_a          232 LWDLRITS--RAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQ-LQVYNREPDRNDNELPIVTSVAFS  307 (380)
T ss_dssp             EEETTTTC--CCCEEECCCSSCCCEEEECTTSSE-EEEECSSSCEEEEETTTTEE-EEEECCCCSSSCCSSCSCSEEEEC
T ss_pred             EEECCCCC--cceEEECCcCCCeEEEEEecCCCe-EEEEcCCCeEEEEECCCCcE-EEEecccccccccccCceEEEEEC
Confidence            99998542  566788899999999999999995 99999999999999999876 55555432       348999999


Q ss_pred             CCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         782 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       782 p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |+|++ +++|+.||.|++||+...+......          ....+|.+.|++++|+|+|. .+++|+.|+.|+|
T Consensus       308 ~~g~~-l~~g~~dg~i~vwd~~~~~~~~~~~----------~~~~~h~~~v~~l~~s~dg~-~l~sgs~D~~i~i  370 (380)
T 3iz6_a          308 ISGRL-LFAGYSNGDCYVWDTLLAEMVLNLG----------TLQNSHEGRISCLGLSSDGS-ALCTGSWDKNLKI  370 (380)
T ss_dssp             SSSSE-EEEECTTSCEEEEETTTCCEEEEEC----------CSCSSCCCCCCEEEECSSSS-EEEEECTTSCEEE
T ss_pred             CCCCE-EEEEECCCCEEEEECCCCceEEEEe----------cccCCCCCceEEEEECCCCC-EEEEeeCCCCEEE
Confidence            99985 8899999999999988744321110          11257999999999999999 4889999999986

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.94  E-value=6.7e-25  Score=248.99  Aligned_cols=262  Identities=21%  Similarity=0.418  Sum_probs=210.3

Q ss_pred             cccCCCCCcccccceeeeeeecceeecccceeEEEEeeccchhhhhhhh---hcccceeeeEeeccCCcEEEEEeCCCcE
Q psy4578         570 FRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLL---DKLRLLIDVAWHLLHESLFGSVADDQKL  646 (860)
Q Consensus       570 f~~l~a~~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~---~~~~~V~~v~~sp~~~~~lasgs~DG~I  646 (860)
                      |+.+.+|...+||+++.--+..+.+... ++...+++|+...++...++   +|...|++|+|+| ++.+|++|+.||.|
T Consensus        94 ~~~l~ap~~~~d~y~~~l~wS~~n~lAv-gld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v  171 (420)
T 4gga_A           94 DRILDAPEIRNDYYLNLVDWSSGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEV  171 (420)
T ss_dssp             SEEEECTTCCCCTTCBCEEECTTSEEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             ceEEECCCCcccccceeEEECCCCEEEE-EeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeE
Confidence            6778889999999887655544444322 34567888988877665544   4567799999998 78999999999999


Q ss_pred             EEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc--------------------------
Q psy4578         647 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE--------------------------  700 (860)
Q Consensus       647 ~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~--------------------------  700 (860)
                      ++||+.++   +.+..+.+|...+.+++|++  . ++++|+.|+.+..|+....                          
T Consensus       172 ~iWd~~~~---~~~~~~~~h~~~v~~~s~~~--~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l  245 (420)
T 4gga_A          172 QLWDVQQQ---KRLRNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHL  245 (420)
T ss_dssp             EEEETTTT---EEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEcCCC---cEEEEEeCCCCceEEEeeCC--C-EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCee
Confidence            99999984   56778889999999999864  4 6999999999988875532                          


Q ss_pred             --ccCCCcEEEEeCCCCCC-CCCeeeecCCCCCeEEEEEcCCCCcEEEEe--eCCCcEEEEeCCCCceeeEEeccCCCce
Q psy4578         701 --ENYDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPYSEYILATG--SADKTVALWDLRNLKLKLHSFESHKDEI  775 (860)
Q Consensus       701 --~~~dg~I~iwDl~~~~~-~~~~~~~~~h~~~I~sl~~sp~g~~llasg--s~Dg~I~IWDl~~~~~~~~~~~~h~~~V  775 (860)
                        +..|+.+++||..+++. ...+.....|...|.+++|+|.+..+++++  +.|++|++||++++.. ...+. +...+
T Consensus       246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~-~~~~~-~~~~v  323 (420)
T 4gga_A          246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-LSAVD-AHSQV  323 (420)
T ss_dssp             EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE-EEEEE-CSSCE
T ss_pred             eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc-ceeec-cccce
Confidence              24588999999987642 234567788999999999999988877764  5799999999999886 55555 44678


Q ss_pred             EEEEEcCCCCCEEEEEE-CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         776 FQVQWSPHNETILASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs-~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      .++.|+|+++.++++++ .||.|++||+.+              ..++..+.+|.+.|++++|+|+|.+ ++||+.|++|
T Consensus       324 ~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~--------------~~~v~~l~gH~~~V~~l~~spdg~~-l~S~s~D~tv  388 (420)
T 4gga_A          324 CSILWSPHYKELISGHGFAQNQLVIWKYPT--------------MAKVAELKGHTSRVLSLTMSPDGAT-VASAAADETL  388 (420)
T ss_dssp             EEEEEETTTTEEEEEECTTTCCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSSC-EEEEETTTEE
T ss_pred             eeeeecCCCCeEEEEEecCCCEEEEEECCC--------------CcEEEEEcCCCCCEEEEEEcCCCCE-EEEEecCCeE
Confidence            99999999987444333 789999999987              3456778899999999999999995 7799999999


Q ss_pred             ee
Q psy4578         855 QK  856 (860)
Q Consensus       855 rI  856 (860)
                      +|
T Consensus       389 ri  390 (420)
T 4gga_A          389 RL  390 (420)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.94  E-value=4.3e-25  Score=245.52  Aligned_cols=220  Identities=18%  Similarity=0.281  Sum_probs=172.5

Q ss_pred             EEEEeeccchhhh-----hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccC-eeeccCCCCCeeEEEE
Q psy4578         602 EVMYLENKTRAQI-----CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKP-SHTVDAHTAEVNCLSF  675 (860)
Q Consensus       602 ~il~l~n~~~~~l-----~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~-~~~~~~h~~~V~~l~~  675 (860)
                      ..+++|+......     ....+|...|++++|+| ++ .+++++.||+|+|||+.+++.... .....+|...|++++|
T Consensus        70 ~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~  147 (357)
T 4g56_B           70 GSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS-EK-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV  147 (357)
T ss_dssp             EEEEEESSCC---CGGGCSEEEECSSCEEEEEEET-TT-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEE
T ss_pred             CeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC-CC-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE
Confidence            3455665543322     22345677899999998 44 456788899999999987643221 2234579999999999


Q ss_pred             ccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEE
Q psy4578         676 NPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL  755 (860)
Q Consensus       676 sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~I  755 (860)
                      +|++++ +++|+.||+               |++||++++   ..+..+.+|...|++++|+|++..++++++.||.|++
T Consensus       148 spdg~~-l~sgs~dg~---------------v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~  208 (357)
T 4g56_B          148 FSDGTQ-AVSGGKDFS---------------VKVWDLSQK---AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL  208 (357)
T ss_dssp             CSSSSE-EEEEETTSC---------------EEEEETTTT---EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEE
T ss_pred             CCCCCE-EEEEeCCCe---------------EEEEECCCC---cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEE
Confidence            999985 899999999               999999987   6777889999999999999998767999999999999


Q ss_pred             EeCCCCceee-EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578         756 WDLRNLKLKL-HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  834 (860)
Q Consensus       756 WDl~~~~~~~-~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~  834 (860)
                      ||+++++... .....|...+.+++|+|++..+|++|+.|+.|++||+++.              ..+..+.+|...|++
T Consensus       209 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~--------------~~~~~~~~~~~~v~~  274 (357)
T 4g56_B          209 WDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP--------------DSAQTSAVHSQNITG  274 (357)
T ss_dssp             CCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG--------------GGCEEECCCSSCEEE
T ss_pred             EECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC--------------cEeEEEeccceeEEE
Confidence            9999877521 2234577889999999998778999999999999999873              345667789999999


Q ss_pred             EEEccCCCeEEEEEeCCCeEee
Q psy4578         835 FSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       835 i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++|+|++..++++|+.|++|+|
T Consensus       275 l~~sp~~~~~lasgs~D~~i~i  296 (357)
T 4g56_B          275 LAYSYHSSPFLASISEDCTVAV  296 (357)
T ss_dssp             EEECSSSSCCEEEEETTSCEEE
T ss_pred             EEEcCCCCCEEEEEeCCCEEEE
Confidence            9999998767899999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.94  E-value=9e-25  Score=242.53  Aligned_cols=200  Identities=25%  Similarity=0.404  Sum_probs=173.0

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCCcee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTQF  693 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg~i~  693 (860)
                      .+..|.+.|.+++|+| ++..+++|+.||+|++||+.++   +.+..+.+|...|.+++|+|+  +. .+++|+.||+  
T Consensus       149 ~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~g~-~l~sgs~Dg~--  221 (354)
T 2pbi_B          149 SVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETGN-TFVSGGCDKK--  221 (354)
T ss_dssp             EEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECCCSSCC-EEEEEETTSC--
T ss_pred             eeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEEeCCCCC-EEEEEeCCCe--
Confidence            3446778899999998 7888999999999999999884   557788899999999999885  45 6999999999  


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc--C
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--H  771 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~--h  771 (860)
                                   |++||++++   ..+..+.+|...|++++|+|++. .+++|+.||+|++||++.... +..+..  +
T Consensus       222 -------------v~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~-~~~~~~~~~  283 (354)
T 2pbi_B          222 -------------AMVWDMRSG---QCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADRE-VAIYSKESI  283 (354)
T ss_dssp             -------------EEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-EEEECCTTC
T ss_pred             -------------EEEEECCCC---cEEEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcE-EEEEcCCCc
Confidence                         999999987   66778889999999999999998 599999999999999998765 444443  3


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D  851 (860)
                      ...+.+++|+|+|+. +++|+.||.|++||+.++              ..+..+.+|.+.|++++|+|+|++ +++|+.|
T Consensus       284 ~~~~~~~~~s~~g~~-l~~g~~d~~i~vwd~~~~--------------~~~~~l~~h~~~v~~l~~spdg~~-l~sgs~D  347 (354)
T 2pbi_B          284 IFGASSVDFSLSGRL-LFAGYNDYTINVWDVLKG--------------SRVSILFGHENRVSTLRVSPDGTA-FCSGSWD  347 (354)
T ss_dssp             CSCEEEEEECTTSSE-EEEEETTSCEEEEETTTC--------------SEEEEECCCSSCEEEEEECTTSSC-EEEEETT
T ss_pred             ccceeEEEEeCCCCE-EEEEECCCcEEEEECCCC--------------ceEEEEECCCCcEEEEEECCCCCE-EEEEcCC
Confidence            457899999999984 899999999999999773              345667799999999999999995 7799999


Q ss_pred             CeEee
Q psy4578         852 NIMQK  856 (860)
Q Consensus       852 g~IrI  856 (860)
                      +.|+|
T Consensus       348 ~~v~v  352 (354)
T 2pbi_B          348 HTLRV  352 (354)
T ss_dssp             SEEEE
T ss_pred             CCEEe
Confidence            99986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=6.5e-25  Score=237.18  Aligned_cols=210  Identities=19%  Similarity=0.319  Sum_probs=174.1

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCCceee
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTQFE  694 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg~i~~  694 (860)
                      +.+|.+.|.+++|+| ++.+|++|+.||+|+|||+..+. ...+..+.+|.+.|++++|+++  +. +|++|+.||+   
T Consensus         5 ~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~-~l~s~s~D~~---   78 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGK---   78 (297)
T ss_dssp             CCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTTE---
T ss_pred             ccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCC-EEEEEcCCCE---
Confidence            346778999999998 78999999999999999997532 3556788999999999999864  65 6999999999   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC--CCcEEEEeeCCCcEEEEeCCCCce-eeEEeccC
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTVALWDLRNLKL-KLHSFESH  771 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~--g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~h  771 (860)
                                  |++||+.++.. ..+..+.+|...|.+++|+|+  +. ++++|+.||.|++||+++... ....+.+|
T Consensus        79 ------------v~iWd~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h  144 (297)
T 2pm7_B           79 ------------VMIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAH  144 (297)
T ss_dssp             ------------EEEEEBSSSCB-CCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred             ------------EEEEEcCCCce-EEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence                        99999987632 345667889999999999997  66 599999999999999987642 24567789


Q ss_pred             CCceEEEEEcCCC------------CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc
Q psy4578         772 KDEIFQVQWSPHN------------ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP  839 (860)
Q Consensus       772 ~~~V~~l~fsp~g------------~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp  839 (860)
                      ...|.+++|+|++            ..+|++|+.||+|++||+++....          ......+.+|.+.|.+++|+|
T Consensus       145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~----------~~~~~~l~~H~~~V~~v~~sp  214 (297)
T 2pm7_B          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT----------YVLESTLEGHSDWVRDVAWSP  214 (297)
T ss_dssp             SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE----------EEEEEEECCCSSCEEEEEECC
T ss_pred             cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce----------EEEEEEecCCCCceEEEEECC
Confidence            9999999999973            235999999999999999763321          124556789999999999999


Q ss_pred             CC--CeEEEEEeCCCeEee
Q psy4578         840 NE--PWVICSVSEDNIMQK  856 (860)
Q Consensus       840 dg--~~Llasgs~Dg~IrI  856 (860)
                      ++  ..++++++.|++|+|
T Consensus       215 ~~~~~~~las~s~D~~v~i  233 (297)
T 2pm7_B          215 TVLLRSYMASVSQDRTCII  233 (297)
T ss_dssp             CCSSSEEEEEEETTSCEEE
T ss_pred             CCCCceEEEEEECCCcEEE
Confidence            96  347889999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=2.7e-25  Score=242.83  Aligned_cols=223  Identities=17%  Similarity=0.296  Sum_probs=180.2

Q ss_pred             hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         614 ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      +..+.+|...|.+++|+| ++.++++|+.||+|++||+.++   +.+..+.+|...|.+++|+|++. ++++|+.|+++.
T Consensus        58 ~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~  132 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVATG---ETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIK  132 (319)
T ss_dssp             EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEE
T ss_pred             ceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCCC---CeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEE
Confidence            334557888999999998 7899999999999999999884   55678889999999999999998 599999999999


Q ss_pred             eeccccc--------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCC
Q psy4578         694 EVEEEEE--------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  741 (860)
Q Consensus       694 ~~~~~~~--------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~  741 (860)
                      +|+....                                ++.|+.|++||+++.   .....+.+|...|.+++|+|+|.
T Consensus       133 vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~sp~g~  209 (319)
T 3frx_A          133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHNSNINTLTASPDGT  209 (319)
T ss_dssp             EEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT---EEEEEECCCCSCEEEEEECTTSS
T ss_pred             EEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc---hhheeecCCCCcEEEEEEcCCCC
Confidence            9976421                                245789999999876   55677889999999999999999


Q ss_pred             cEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCcc
Q psy4578         742 YILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL  821 (860)
Q Consensus       742 ~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~  821 (860)
                      + |++|+.||.|++||+++... +..+.. ...|.+++|+|++.. +++++ ++.+++|++............      .
T Consensus       210 ~-l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~v~~~~~sp~~~~-la~~~-~~~i~v~~~~~~~~~~~~~~~------~  278 (319)
T 3frx_A          210 L-IASAGKDGEIMLWNLAAKKA-MYTLSA-QDEVFSLAFSPNRYW-LAAAT-ATGIKVFSLDPQYLVDDLRPE------F  278 (319)
T ss_dssp             E-EEEEETTCEEEEEETTTTEE-EEEEEC-CSCEEEEEECSSSSE-EEEEE-TTEEEEEEETTEEEEEEECCC------C
T ss_pred             E-EEEEeCCCeEEEEECCCCcE-EEEecC-CCcEEEEEEcCCCCE-EEEEc-CCCcEEEEeCcCeeeeccCcc------c
Confidence            4 99999999999999999876 666664 568999999999974 66666 556999998864332211100      0


Q ss_pred             EEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         822 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       822 i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ......|...+.+++|+|+|++ +++|+.|+.|+|
T Consensus       279 ~~~~~~~~~~v~~~~~spdg~~-l~sg~~Dg~i~v  312 (319)
T 3frx_A          279 AGYSKAAEPHAVSLAWSADGQT-LFAGYTDNVIRV  312 (319)
T ss_dssp             TTCCGGGCCCEEEEEECTTSSE-EEEEETTSCEEE
T ss_pred             cccccCcCcceeEEEECCCCCE-EEEeecCceEEE
Confidence            0012346678999999999995 779999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=4.7e-25  Score=240.96  Aligned_cols=203  Identities=22%  Similarity=0.397  Sum_probs=175.6

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc--ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV--SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      +.+|.+.|++++|+|.++++|++|+.||+|++|++.....  ..++..+.+|...|.+++|+|++.+ +++|+.|++   
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~-l~s~s~D~~---   88 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY-ALSASWDKT---   88 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSE---
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCE-EEEEeCCCE---
Confidence            4578899999999996678999999999999999874321  2346678899999999999999985 899999999   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE  774 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~  774 (860)
                                  |++||+.++   +.+..+.+|...|.+++|+|++. ++++|+.||+|++||++...  +..+.+|...
T Consensus        89 ------------v~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~--~~~~~~h~~~  150 (319)
T 3frx_A           89 ------------LRLWDVATG---ETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQC--LATLLGHNDW  150 (319)
T ss_dssp             ------------EEEEETTTT---EEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCE--EEEECCCSSC
T ss_pred             ------------EEEEECCCC---CeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe--EEEEeccCCc
Confidence                        999999987   66778899999999999999998 49999999999999997543  6778899999


Q ss_pred             eEEEEEcCCCC-----CEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         775 IFQVQWSPHNE-----TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       775 V~~l~fsp~g~-----~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      |.+++|+|.+.     ..+++|+.|+.|++||+++.              .....+.+|...|.+++|+|+|. ++++|+
T Consensus       151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--------------~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~  215 (319)
T 3frx_A          151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF--------------QIEADFIGHNSNINTLTASPDGT-LIASAG  215 (319)
T ss_dssp             EEEEEECCC------CCEEEEEETTSCEEEEETTTT--------------EEEEEECCCCSCEEEEEECTTSS-EEEEEE
T ss_pred             EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc--------------hhheeecCCCCcEEEEEEcCCCC-EEEEEe
Confidence            99999998542     25899999999999999872              34566778999999999999999 588999


Q ss_pred             CCCeEee
Q psy4578         850 EDNIMQK  856 (860)
Q Consensus       850 ~Dg~IrI  856 (860)
                      .|+.|++
T Consensus       216 ~dg~i~i  222 (319)
T 3frx_A          216 KDGEIML  222 (319)
T ss_dssp             TTCEEEE
T ss_pred             CCCeEEE
Confidence            9999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=2.4e-25  Score=249.52  Aligned_cols=224  Identities=19%  Similarity=0.342  Sum_probs=181.5

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      .+.+|.+.|++++|+| ++.+|++|+.||+|+|||..++   .....+..|...|.+++|+|+|++ +++|+.|+.+.+|
T Consensus        61 ~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~---~~~~~~~~h~~~v~~~~~s~~g~~-las~~~d~~v~iw  135 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAPNGQS-VACGGLDSACSIF  135 (380)
T ss_dssp             EECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTT---EEEEEEECCCTTCCCCEECTTSSE-EEECCSSSCCEEE
T ss_pred             cccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---ccceEEecCCCCEEEEEECCCCCE-EEEeeCCCcEEEE
Confidence            3557889999999999 7889999999999999999874   556778899999999999999985 8999999999999


Q ss_pred             ccccc-----------------------------------ccCCCcEEEEeCCCCCCCCCeeee-----cCCCCCeEEEE
Q psy4578         696 EEEEE-----------------------------------ENYDQKLMIWDTRSHNVSKPSHTV-----DAHTAEVNCLS  735 (860)
Q Consensus       696 ~~~~~-----------------------------------~~~dg~I~iwDl~~~~~~~~~~~~-----~~h~~~I~sl~  735 (860)
                      +....                                   ++.|+.|++||+.++   ..+..+     .+|...|.+++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~---~~~~~~~~~~~~~h~~~v~~~~  212 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG---QRISIFGSEFPSGHTADVLSLS  212 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC---CEEEEECCCSSSSCCSCEEEEE
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC---cEEEEeecccCCCCccCeEEEE
Confidence            75320                                   246889999999987   444444     67999999999


Q ss_pred             EcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccccc
Q psy4578         736 FNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE  815 (860)
Q Consensus       736 ~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~  815 (860)
                      |+|.+..++++|+.||+|++||++.....+..+.+|.+.|++++|+|+|.. |++|+.||+|++||++++..........
T Consensus       213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~lwd~~~~~~~~~~~~~~  291 (380)
T 3iz6_a          213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQLQVYNREP  291 (380)
T ss_dssp             ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE-EEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred             eecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe-EEEEcCCCeEEEEECCCCcEEEEecccc
Confidence            988444469999999999999998654457889999999999999999985 8999999999999999855433221110


Q ss_pred             CCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         816 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       816 ~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .       ....+...|++++|+|+|++ +++|+.||.|++
T Consensus       292 ~-------~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~v  324 (380)
T 3iz6_a          292 D-------RNDNELPIVTSVAFSISGRL-LFAGYSNGDCYV  324 (380)
T ss_dssp             S-------SSCCSSCSCSEEEECSSSSE-EEEECTTSCEEE
T ss_pred             c-------ccccccCceEEEEECCCCCE-EEEEECCCCEEE
Confidence            0       00123345899999999995 778999998886

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=1.4e-24  Score=239.42  Aligned_cols=224  Identities=23%  Similarity=0.395  Sum_probs=176.1

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      .+.+|...|.+++|+| ++.++++|+.||+|++||+.++   ..+..+.+|...|.+++|+|++++ +++|+.|+++.+|
T Consensus        71 ~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~-l~s~~~d~~i~~w  145 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTG---TTYKRFVGHQSEVYSVAFSPDNRQ-ILSAGAEREIKLW  145 (343)
T ss_dssp             EECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTSS---CEEEEEECCCSCEEEEEECSSTTE-EEEEETTSCEEEE
T ss_pred             hhccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCC---cEEEEEcCCCCcEEEEEECCCCCE-EEEEcCCCEEEEE
Confidence            3557788999999998 7889999999999999999884   456778899999999999999995 8999999999999


Q ss_pred             ccccc---------------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578         696 EEEEE---------------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  736 (860)
Q Consensus       696 ~~~~~---------------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~  736 (860)
                      +....                                       ++.|+.|++||...    .....+.+|...|.+++|
T Consensus       146 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~h~~~v~~~~~  221 (343)
T 2xzm_R          146 NILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----QIRYTFKAHESNVNHLSI  221 (343)
T ss_dssp             ESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT----EEEEEEECCSSCEEEEEE
T ss_pred             eccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC----ceeEEEcCccccceEEEE
Confidence            76311                                       23478999999432    456678899999999999


Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc--ccccc
Q psy4578         737 NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ--STEDA  814 (860)
Q Consensus       737 sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~--~~~~~  814 (860)
                      +|+|.+ |++|+.||.|++||++........+. +...|.+++|+|++.. + +++.|+.|++||+.+.....  .... 
T Consensus       222 s~~g~~-l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~-l-a~~~d~~v~iw~~~~~~~~~~~~~~~-  296 (343)
T 2xzm_R          222 SPNGKY-IATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQW-V-AVGTDQGVKIFNLMTQSKAPVCTIEA-  296 (343)
T ss_dssp             CTTSSE-EEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCE-E-EEEESSCEEEEESSSCCSCSEEECCC-
T ss_pred             CCCCCE-EEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCE-E-EEECCCCEEEEEeCCCCCCceEEeec-
Confidence            999995 99999999999999965544344443 5567999999999973 4 45668899999998754432  1110 


Q ss_pred             cCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       815 ~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                        ..........+|...|.+++|+|+|++ +++|+.||.|++
T Consensus       297 --~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~sg~~Dg~v~~  335 (343)
T 2xzm_R          297 --EPITKAEGQKGKNPQCTSLAWNALGKK-LFAGFTDGVIRT  335 (343)
T ss_dssp             --CSGGGBTTBCCSCCCEEEEEECSSSCC-EEEEETTSEEEE
T ss_pred             --CcchhhhhhcCCCCceEEEEECCCCCe-EEEecCCceEEE
Confidence              000011112368889999999999995 779999999986

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.93  E-value=5.2e-24  Score=237.78  Aligned_cols=234  Identities=21%  Similarity=0.250  Sum_probs=189.7

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeee----------ccCCCCCeeEEEEccCCCeEEEEEe
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHT----------VDAHTAEVNCLSFNPYSEYILATGS  687 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~----------~~~h~~~V~~l~~sp~g~~llasgs  687 (860)
                      ..|.+.|++++|+|.++.+|++|+.||.|++||+.++........          ..+|...|.+++|+|++..++++|+
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  119 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS  119 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence            357789999999986788999999999999999998644332221          1358999999999995544699999


Q ss_pred             CCCceeeeccccc-----------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC
Q psy4578         688 ADKTQFEVEEEEE-----------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  738 (860)
Q Consensus       688 ~Dg~i~~~~~~~~-----------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp  738 (860)
                      .||.+.+|+....                             +..++.|++||++++   ..+..+.+|...|.+++|+|
T Consensus       120 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~v~~~~~~~  196 (408)
T 4a11_B          120 FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG---SCSHILQGHRQEILAVSWSP  196 (408)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS---CCCEEECCCCSCEEEEEECS
T ss_pred             CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc---ceeeeecCCCCcEEEEEECC
Confidence            9999999987643                             235789999999987   56678889999999999999


Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCceeeEEe---------------ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECC
Q psy4578         739 YSEYILATGSADKTVALWDLRNLKLKLHSF---------------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  803 (860)
Q Consensus       739 ~g~~llasgs~Dg~I~IWDl~~~~~~~~~~---------------~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~  803 (860)
                      ++.+++++|+.||.|++||++........+               .+|...|.+++|+|++++ |++|+.||.|++||+.
T Consensus       197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~  275 (408)
T 4a11_B          197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH-LLTVGTDNRMRLWNSS  275 (408)
T ss_dssp             SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEETT
T ss_pred             CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE-EEEecCCCeEEEEECC
Confidence            999889999999999999998876444544               568899999999999985 8899999999999999


Q ss_pred             CCCccccccccc---------------------------------CCCCccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578         804 KIGEEQSTEDAE---------------------------------DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       804 ~~~~~~~~~~~~---------------------------------~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~  850 (860)
                      +...........                                 ......+..+.+|.+.|++++|+|+++ ++++++.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~  354 (408)
T 4a11_B          276 NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ-ELYSGSR  354 (408)
T ss_dssp             TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTT-EEEEEET
T ss_pred             CCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCC-EEEEECC
Confidence            866433221100                                 022356677788999999999999999 4779999


Q ss_pred             CCeEee
Q psy4578         851 DNIMQK  856 (860)
Q Consensus       851 Dg~IrI  856 (860)
                      ||.|++
T Consensus       355 dg~i~i  360 (408)
T 4a11_B          355 DCNILA  360 (408)
T ss_dssp             TSCEEE
T ss_pred             CCeEEE
Confidence            999886

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.93  E-value=2.5e-24  Score=238.96  Aligned_cols=217  Identities=20%  Similarity=0.358  Sum_probs=181.8

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      .+.+|.+.|++++|+| ++.+|++|+.||+|++||..++   .....+..|...|.+++|+|+|.. +++|+.|+.+.+|
T Consensus        59 ~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~---~~~~~~~~~~~~v~~~~~sp~g~~-lasg~~d~~i~v~  133 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTT---NKEHAVTMPCTWVMACAYAPSGCA-IACGGLDNKCSVY  133 (354)
T ss_dssp             EEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCCCEEEECTTSSE-EEEESTTSEEEEE
T ss_pred             EecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCC---CcceEEecCCCCEEEEEECCCCCE-EEEeeCCCCEEEE
Confidence            3457889999999998 7889999999999999999874   345566778899999999999985 8999999999888


Q ss_pred             ccccc---------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC--C
Q psy4578         696 EEEEE---------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--S  740 (860)
Q Consensus       696 ~~~~~---------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~--g  740 (860)
                      .....                                 ++.|+.|++||+.++   ..+..+.+|...|.+++|+|+  +
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~g  210 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETG  210 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECCCSSC
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEEeCCCC
Confidence            65311                                 346889999999987   677888999999999999885  4


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCc
Q psy4578         741 EYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE  820 (860)
Q Consensus       741 ~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~  820 (860)
                      . .+++|+.||.|++||++++.. +..+.+|...|++++|+|++.. |++|+.||+|++||++......           
T Consensus       211 ~-~l~sgs~Dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~v~lwd~~~~~~~~-----------  276 (354)
T 2pbi_B          211 N-TFVSGGCDKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGDA-FASGSDDATCRLYDLRADREVA-----------  276 (354)
T ss_dssp             C-EEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEE-----------
T ss_pred             C-EEEEEeCCCeEEEEECCCCcE-EEEecCCCCCeEEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEEE-----------
Confidence            5 699999999999999999886 7888999999999999999984 8999999999999998743211           


Q ss_pred             cEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         821 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       821 ~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                       ......+...+++++|+|+|. ++++|+.|+.|++
T Consensus       277 -~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~v  310 (354)
T 2pbi_B          277 -IYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINV  310 (354)
T ss_dssp             -EECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred             -EEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEE
Confidence             111223445789999999999 5779999999886

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.93  E-value=3.2e-25  Score=241.90  Aligned_cols=227  Identities=21%  Similarity=0.344  Sum_probs=175.5

Q ss_pred             eEEEEeeccchh---hhhhhhhcccceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEc
Q psy4578         601 EEVMYLENKTRA---QICQLLDKLRLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN  676 (860)
Q Consensus       601 ~~il~l~n~~~~---~l~~l~~~~~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~s  676 (860)
                      ...+.+|+....   .+..+.+|.+.|.+++|+++ ++.+|++|+.||+|++||+.++.. .....+.+|...|.+++|+
T Consensus        34 D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~  112 (316)
T 3bg1_A           34 DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW-EKSHEHAGHDSSVNSVCWA  112 (316)
T ss_dssp             TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC-CEEEEECCCSSCCCEEEEC
T ss_pred             CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc-eEEEEccCCCCceEEEEEC
Confidence            334555555433   23445678899999999853 578999999999999999987532 3455677899999999999


Q ss_pred             cC--CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCC--------------
Q psy4578         677 PY--SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS--------------  740 (860)
Q Consensus       677 p~--g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g--------------  740 (860)
                      |+  +. ++++|+.||+               |++||++..........+.+|...|.+++|+|++              
T Consensus       113 p~~~g~-~lasgs~D~~---------------i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  176 (316)
T 3bg1_A          113 PHDYGL-ILACGSSDGA---------------ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKP  176 (316)
T ss_dssp             CTTTCS-CEEEECSSSC---------------EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCC
T ss_pred             CCCCCc-EEEEEcCCCC---------------EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCc
Confidence            98  55 5999999999               9999998653212234567899999999999973              


Q ss_pred             ---CcEEEEeeCCCcEEEEeCCCCc--eeeEEeccCCCceEEEEEcCCC---CCEEEEEECCCcEEEEECCCCCcccccc
Q psy4578         741 ---EYILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHN---ETILASSGTDRRLHVWDLSKIGEEQSTE  812 (860)
Q Consensus       741 ---~~llasgs~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~~l~fsp~g---~~lL~tgs~Dg~I~iWdl~~~~~~~~~~  812 (860)
                         . +|++|+.||+|++||++...  .....+.+|...|++++|+|++   ..+|++|+.||+|++||+.......   
T Consensus       177 ~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~---  252 (316)
T 3bg1_A          177 NYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT---  252 (316)
T ss_dssp             CCCC-BEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC---
T ss_pred             cccc-eEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc---
Confidence               4 59999999999999997552  2356788999999999999986   2369999999999999987632100   


Q ss_pred             cccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       813 ~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                             .......+|.+.|.+++|+|+|++ +++++.|+.|++
T Consensus       253 -------~~~~~~~~~~~~v~~v~~sp~g~~-las~~~D~~v~l  288 (316)
T 3bg1_A          253 -------WSPKLLHKFNDVVWHVSWSITANI-LAVSGGDNKVTL  288 (316)
T ss_dssp             -------CBCCEEEECSSCEEEEEECTTTCC-EEEEESSSCEEE
T ss_pred             -------hhhhhhhcCCCcEEEEEEcCCCCE-EEEEcCCCeEEE
Confidence                   001123467889999999999995 779999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.4e-24  Score=238.46  Aligned_cols=210  Identities=22%  Similarity=0.375  Sum_probs=164.7

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCC----cccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~----~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      |.+.|.+++|+| ++.+|++|+.||+|++||.....    .......+.+|...|.+++|+|++++ |++|+.|++    
T Consensus        57 h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~-las~s~D~~----  130 (330)
T 2hes_X           57 HKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY-LATCSRDKS----  130 (330)
T ss_dssp             CCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCE-EEEEETTSC----
T ss_pred             ccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCE-EEEEeCCCE----
Confidence            778899999999 78899999999999999986421    12345677899999999999999985 899999999    


Q ss_pred             cccccccCCCcEEEEeCCCC-CCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc-eeeEEeccCCC
Q psy4578         696 EEEEEENYDQKLMIWDTRSH-NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK-LKLHSFESHKD  773 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~-~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~-~~~~~~~~h~~  773 (860)
                                 |++||++.. .....+..+.+|...|.+++|+|++. +|++|+.||+|++||.++.. ..+..+.+|.+
T Consensus       131 -----------v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~  198 (330)
T 2hes_X          131 -----------VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEG  198 (330)
T ss_dssp             -----------EEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred             -----------EEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCC
Confidence                       999999543 22345667889999999999999998 59999999999999998763 23678899999


Q ss_pred             ceEEEEEcCC--CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecC-ccCceEEEEEccCCCeEEEEEeC
Q psy4578         774 EIFQVQWSPH--NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG-HTAKISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       774 ~V~~l~fsp~--g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~-h~~~I~~i~~spdg~~Llasgs~  850 (860)
                      .|.+++|+|+  +. .|++|+.|++|++||+........      ....+...+.+ |...|.+++|++++  ++++++.
T Consensus       199 ~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~------~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~  269 (330)
T 2hes_X          199 TVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMGDDEDDQ------QEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGA  269 (330)
T ss_dssp             CEEEEEECCSSSSC-EEEEEETTSCEEEEEEEEECTTSC------EEEEEEEECCSCCSSCEEEEEECTTS--CEEEEET
T ss_pred             cEEEEEecCCCCee-EEEEEeCCCeEEEEEecCCCcccc------ceeEEeeecccccccceEEEEEcCCC--EEEEEeC
Confidence            9999999998  44 589999999999999876322110      00123334444 89999999999766  4779999


Q ss_pred             CCeEee
Q psy4578         851 DNIMQK  856 (860)
Q Consensus       851 Dg~IrI  856 (860)
                      ||.|+|
T Consensus       270 dg~v~i  275 (330)
T 2hes_X          270 DGVLAV  275 (330)
T ss_dssp             TSCEEE
T ss_pred             CCEEEE
Confidence            999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.93  E-value=2.5e-25  Score=253.91  Aligned_cols=205  Identities=18%  Similarity=0.290  Sum_probs=167.2

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      +...|++++|+|.++++||+|+.||.|+|||+.++.. .....+.+|.+.|++++|+|.+...|++|+.||+        
T Consensus       118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~--------  188 (435)
T 4e54_B          118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT--------  188 (435)
T ss_dssp             CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC--------
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE--------
Confidence            4567999999998888999999999999999987543 3344567899999999999854446999999999        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ  779 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~  779 (860)
                             |++||+++... ........+...+.+++|+|++. ++++|+.||.|++||+++..  +..+.+|...|++++
T Consensus       189 -------v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~--~~~~~~h~~~v~~v~  257 (435)
T 4e54_B          189 -------TRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKE--LWNLRMHKKKVTHVA  257 (435)
T ss_dssp             -------EEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCB--CCCSBCCSSCEEEEE
T ss_pred             -------EEEeeccCCce-eEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcce--eEEEecccceEEeee
Confidence                   99999976421 12222233455688999999998 59999999999999997644  567889999999999


Q ss_pred             EcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         780 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       780 fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |+|+++.++++|+.||.|++||+++......           .....+|...|++++|+|+|.+ +++++.||.|+|
T Consensus       258 ~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~-----------~~~~~~h~~~v~~~~~spdg~~-l~s~~~D~~i~i  322 (435)
T 4e54_B          258 LNPCCDWFLATASVDQTVKIWDLRQVRGKAS-----------FLYSLPHRHPVNAACFSPDGAR-LLTTDQKSEIRV  322 (435)
T ss_dssp             ECTTCSSEEEEEETTSBCCEEETTTCCSSSC-----------CSBCCBCSSCEEECCBCTTSSE-EEEEESSSCEEE
T ss_pred             ecCCCceEEEEecCcceeeEEecccccccce-----------EEEeeeccccccceeECCCCCe-eEEEcCCCEEEE
Confidence            9999988899999999999999988554322           1223478999999999999995 779999999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.93  E-value=4.9e-24  Score=231.01  Aligned_cols=227  Identities=26%  Similarity=0.397  Sum_probs=182.5

Q ss_pred             EEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         604 MYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       604 l~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      +.+|+....+. ..+..|...|.+++|+| ++++|++|+.||.|++||+.++   ..+..+.+|...|.+++|+|++.. 
T Consensus        47 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~-  121 (312)
T 4ery_A           47 IKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNL-  121 (312)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSSSE-
T ss_pred             EEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCE-
Confidence            44555544443 33446778899999998 7899999999999999999884   556778899999999999999984 


Q ss_pred             EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc
Q psy4578         683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK  762 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~  762 (860)
                      +++|+.||.               |++||++++   ..+..+..|...|.+++|+|++. ++++|+.||.|++||++++.
T Consensus       122 l~s~~~d~~---------------i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~  182 (312)
T 4ery_A          122 IVSGSFDES---------------VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQ  182 (312)
T ss_dssp             EEEEETTSC---------------EEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC
T ss_pred             EEEEeCCCc---------------EEEEECCCC---EEEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Confidence            899999998               999999886   66778889999999999999998 49999999999999999987


Q ss_pred             eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc-----------------------c----
Q psy4578         763 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA-----------------------E----  815 (860)
Q Consensus       763 ~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~-----------------------~----  815 (860)
                      ........+...+.+++|+|++++ +++++.||.|++||+++..........                       .    
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i  261 (312)
T 4ery_A          183 CLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV  261 (312)
T ss_dssp             EEEEECCSSCCCEEEEEECTTSSE-EEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCE
T ss_pred             eeeEEeccCCCceEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEE
Confidence            633334456778999999999985 889999999999999875433221100                       0    


Q ss_pred             ----CCCCccEEEecCccCceEEEEEccCCCeEEEEEe--CCCeEee
Q psy4578         816 ----DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS--EDNIMQK  856 (860)
Q Consensus       816 ----~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs--~Dg~IrI  856 (860)
                          ......+..+.+|...|.+++|+|+++. +++++  .|+.|++
T Consensus       262 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~~~~~d~~i~~  307 (312)
T 4ery_A          262 YIWNLQTKEIVQKLQGHTDVVISTACHPTENI-IASAALENDKTIKL  307 (312)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECSSSSE-EEEEECTTTCCEEE
T ss_pred             EEEECCCchhhhhhhccCCcEEEEeecCcCCc-eEEEEccCCccEEE
Confidence                0223456667789999999999999995 55665  6898886

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=5e-24  Score=234.98  Aligned_cols=203  Identities=23%  Similarity=0.385  Sum_probs=171.1

Q ss_pred             hhhhcccceeeeEe-----eccCCcEEEEEeCCCcEEEEEcCCCCc----ccCeeeccCCCCCeeEEEEccCCCeEEEEE
Q psy4578         616 QLLDKLRLLIDVAW-----HLLHESLFGSVADDQKLMIWDTRSHNV----SKPSHTVDAHTAEVNCLSFNPYSEYILATG  686 (860)
Q Consensus       616 ~l~~~~~~V~~v~~-----sp~~~~~lasgs~DG~I~IWd~~~~~~----~~~~~~~~~h~~~V~~l~~sp~g~~llasg  686 (860)
                      .+.+|.+.|++++|     ++.++.+|++|+.||+|++||+..+..    ..+...+.+|...|.+++|+|++.+ +++|
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~-l~s~   94 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF-AISS   94 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE-EEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE-EEEE
Confidence            34567889999999     655788999999999999999976431    2345677899999999999999984 8999


Q ss_pred             eCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeE
Q psy4578         687 SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH  766 (860)
Q Consensus       687 s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~  766 (860)
                      +.|++               |++||++++   ..+..+.+|...|.+++|+|++.+ +++|+.||+|++||+.....  .
T Consensus        95 s~D~~---------------v~lwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~-l~s~~~d~~i~~wd~~~~~~--~  153 (343)
T 2xzm_R           95 SWDKT---------------LRLWDLRTG---TTYKRFVGHQSEVYSVAFSPDNRQ-ILSAGAEREIKLWNILGECK--F  153 (343)
T ss_dssp             ETTSE---------------EEEEETTSS---CEEEEEECCCSCEEEEEECSSTTE-EEEEETTSCEEEEESSSCEE--E
T ss_pred             cCCCc---------------EEEEECCCC---cEEEEEcCCCCcEEEEEECCCCCE-EEEEcCCCEEEEEeccCCce--e
Confidence            99999               999999987   667788999999999999999995 89999999999999985432  2


Q ss_pred             Ee---ccCCCceEEEEEcCCCC---------CEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578         767 SF---ESHKDEIFQVQWSPHNE---------TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  834 (860)
Q Consensus       767 ~~---~~h~~~V~~l~fsp~g~---------~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~  834 (860)
                      ..   .+|...|.+++|+|++.         .++++|+.||.|++||...               .....+.+|...|.+
T Consensus       154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------------~~~~~~~~h~~~v~~  218 (343)
T 2xzm_R          154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---------------QIRYTFKAHESNVNH  218 (343)
T ss_dssp             ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT---------------EEEEEEECCSSCEEE
T ss_pred             eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC---------------ceeEEEcCccccceE
Confidence            22   26889999999999872         3589999999999999432               345567789999999


Q ss_pred             EEEccCCCeEEEEEeCCCeEee
Q psy4578         835 FSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       835 i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++|+|+|++ +++|+.|+.|++
T Consensus       219 ~~~s~~g~~-l~sgs~dg~v~i  239 (343)
T 2xzm_R          219 LSISPNGKY-IATGGKDKKLLI  239 (343)
T ss_dssp             EEECTTSSE-EEEEETTCEEEE
T ss_pred             EEECCCCCE-EEEEcCCCeEEE
Confidence            999999995 779999999986

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.93  E-value=8.1e-24  Score=229.27  Aligned_cols=201  Identities=25%  Similarity=0.437  Sum_probs=174.6

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      .+.+|.+.|++++|+| ++.++++|+.||.|++|+..++   .....+.+|...|.+++|+|+++. +++|+.||.    
T Consensus        18 ~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~----   88 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNL-LVSASDDKT----   88 (312)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSE-EEEEETTSE----
T ss_pred             EEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCc---ccchhhccCCCceEEEEEcCCCCE-EEEECCCCE----
Confidence            3456778999999998 7889999999999999999874   446677899999999999999984 899999998    


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCce
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEI  775 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V  775 (860)
                                 |++||+.++   ..+..+.+|...|.+++|+|++. ++++|+.||.|++||++++.. +..+..|...|
T Consensus        89 -----------i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v  152 (312)
T 4ery_A           89 -----------LKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPV  152 (312)
T ss_dssp             -----------EEEEETTTC---CEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCE-EEEECCCSSCE
T ss_pred             -----------EEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEE-EEEecCCCCcE
Confidence                       999999987   66778889999999999999998 499999999999999999886 78888999999


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      .+++|+|++.. +++|+.||.|++||+++.....             .....+...+..++|+|++++ +++++.|+.|+
T Consensus       153 ~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~  217 (312)
T 4ery_A          153 SAVHFNRDGSL-IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLK  217 (312)
T ss_dssp             EEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------EECCSSCCCEEEEEECTTSSE-EEEEETTTEEE
T ss_pred             EEEEEcCCCCE-EEEEeCCCcEEEEECCCCceee-------------EEeccCCCceEEEEECCCCCE-EEEEcCCCeEE
Confidence            99999999984 8999999999999998743221             122356678999999999995 67889999988


Q ss_pred             e
Q psy4578         856 K  856 (860)
Q Consensus       856 I  856 (860)
                      +
T Consensus       218 i  218 (312)
T 4ery_A          218 L  218 (312)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.93  E-value=4.1e-24  Score=251.56  Aligned_cols=224  Identities=24%  Similarity=0.450  Sum_probs=190.5

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      .+.+|+.....+..+..|...|.+++|+| ++..+++|+.||.|++||...    +.+..+.+|...|++++|+|++++ 
T Consensus       326 ~i~~w~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~----~~~~~~~~~~~~v~~~~~s~dg~~-  399 (577)
T 2ymu_A          326 TVKLWNRNGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQT-  399 (577)
T ss_dssp             CEEEEETTSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTC----CEEEEEECCSSCEEEEEECTTSSC-
T ss_pred             eEEEEeCCCCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCC----CEEEEecCCCCCeEEEEECCCCCE-
Confidence            35566666666666777888999999998 788999999999999999643    556778899999999999999996 


Q ss_pred             EEEEeCCCceeeeccccc--------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578         683 LATGSADKTQFEVEEEEE--------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  736 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~--------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~  736 (860)
                      +++|+.|+.+.+|+....                          +..|+.|++||...    +.+..+.+|...|++++|
T Consensus       400 l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~  475 (577)
T 2ymu_A          400 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAF  475 (577)
T ss_dssp             EEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----CEEEEEECCSSCEEEEEE
T ss_pred             EEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----CEEEEEcCCCCCEEEEEE
Confidence            899999999999875432                          24578999999753    567788899999999999


Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC
Q psy4578         737 NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED  816 (860)
Q Consensus       737 sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~  816 (860)
                      +|++. ++++|+.|+.|++||.. ++. +..+.+|...|++++|+|+|++ |++|+.||.|++||...            
T Consensus       476 spd~~-~las~~~d~~i~iw~~~-~~~-~~~~~~h~~~v~~l~~s~dg~~-l~s~~~dg~v~lwd~~~------------  539 (577)
T 2ymu_A          476 SPDGQ-TIASASDDKTVKLWNRN-GQL-LQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNG------------  539 (577)
T ss_dssp             CTTSC-EEEEEETTSEEEEEETT-SCE-EEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTTS------------
T ss_pred             cCCCC-EEEEEeCCCEEEEEcCC-CCE-EEEEeCCCCCEEEEEEcCCCCE-EEEEECcCEEEEEeCCC------------
Confidence            99999 49999999999999964 444 7788999999999999999986 89999999999999532            


Q ss_pred             CCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         817 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       817 ~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                         .++..+.+|.+.|++++|+|||++ +++++.|++|++
T Consensus       540 ---~~~~~~~~h~~~v~~~~fs~dg~~-l~s~~~D~~i~~  575 (577)
T 2ymu_A          540 ---QLLQTLTGHSSSVWGVAFSPDGQT-IASASSDKTVKL  575 (577)
T ss_dssp             ---CEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEE
T ss_pred             ---CEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCEEEE
Confidence               356677899999999999999996 668999999875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.8e-24  Score=233.43  Aligned_cols=205  Identities=20%  Similarity=0.368  Sum_probs=163.8

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec-cC-CCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV-DA-HTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~-~~-h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      +.+|.+.|.+++|+| +  +|++|+.||+|++||+..+.. .....+ .+ |...|.+++|+|+++ ++++|+.|++   
T Consensus        10 ~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~~-~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~---   81 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDDF-TLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDST---   81 (330)
T ss_dssp             EECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSCC-EEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSC---
T ss_pred             eccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCCe-EEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCc---
Confidence            446778999999997 3  999999999999999986422 223333 34 999999999999998 5899999999   


Q ss_pred             ecccccccCCCcEEEEeCCCCC----CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc---eeeEE
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK---LKLHS  767 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~----~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~---~~~~~  767 (860)
                                  |++||+....    ....+..+.+|...|.+++|+|++.+ |++|+.|++|++||++...   ..+..
T Consensus        82 ------------v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~-las~s~D~~v~iwd~~~~~~~~~~~~~  148 (330)
T 2hes_X           82 ------------VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY-LATCSRDKSVWIWETDESGEEYECISV  148 (330)
T ss_dssp             ------------EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCE-EEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred             ------------EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence                        9999986431    12345678899999999999999995 9999999999999995332   23667


Q ss_pred             eccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccC--CCeEE
Q psy4578         768 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVI  845 (860)
Q Consensus       768 ~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd--g~~Ll  845 (860)
                      +.+|...|.+++|+|++. +|++|+.||+|++||.....            ..++..+.+|.+.|.+++|+|+  +. .+
T Consensus       149 ~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~-~l  214 (330)
T 2hes_X          149 LQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDD------------WECVAVLNGHEGTVWSSDFDKTEGVF-RL  214 (330)
T ss_dssp             ECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTE------------EEEEEEECCCSSCEEEEEECCSSSSC-EE
T ss_pred             eccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCC------------eeEEEEccCCCCcEEEEEecCCCCee-EE
Confidence            889999999999999998 48999999999999986521            2456778899999999999998  45 68


Q ss_pred             EEEeCCCeEee
Q psy4578         846 CSVSEDNIMQK  856 (860)
Q Consensus       846 asgs~Dg~IrI  856 (860)
                      ++|+.|++|++
T Consensus       215 ~s~s~D~~v~i  225 (330)
T 2hes_X          215 CSGSDDSTVRV  225 (330)
T ss_dssp             EEEETTSCEEE
T ss_pred             EEEeCCCeEEE
Confidence            89999999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.93  E-value=4.4e-24  Score=243.25  Aligned_cols=214  Identities=21%  Similarity=0.389  Sum_probs=180.9

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCC-------CcccCeeeccCCCCCeeEEEEccCCCeEEEEEe
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH-------NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS  687 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~-------~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs  687 (860)
                      .....|.+.|++++|+|+++.++++|+.||.|++|++.+.       ........+.+|...|++++|+|++..++++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            4456788899999999966889999999999999999752       113556777899999999999999886699999


Q ss_pred             CCCceeeecccccccCCCcEEEEeCCCCCCC----CCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc-
Q psy4578         688 ADKTQFEVEEEEEENYDQKLMIWDTRSHNVS----KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK-  762 (860)
Q Consensus       688 ~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~----~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~-  762 (860)
                      .||.               |++||+..+...    .....+.+|...|.+++|+|++..++++|+.||.|++||+++.. 
T Consensus       202 ~dg~---------------i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~  266 (430)
T 2xyi_A          202 DDHT---------------ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT  266 (430)
T ss_dssp             TTSC---------------EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred             CCCe---------------EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence            9998               999999874221    12456778999999999999666689999999999999999873 


Q ss_pred             -eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCC
Q psy4578         763 -LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE  841 (860)
Q Consensus       763 -~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg  841 (860)
                       ..+..+..|...|++++|+|++++++++|+.||.|++||+++..             .++..+.+|.+.|++++|+|++
T Consensus       267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-------------~~~~~~~~h~~~v~~i~~sp~~  333 (430)
T 2xyi_A          267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-------------LKLHSFESHKDEIFQVQWSPHN  333 (430)
T ss_dssp             SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-------------SCSEEEECCSSCEEEEEECSSC
T ss_pred             CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-------------CCeEEeecCCCCEEEEEECCCC
Confidence             33667788999999999999999889999999999999998732             2355666899999999999999


Q ss_pred             CeEEEEEeCCCeEee
Q psy4578         842 PWVICSVSEDNIMQK  856 (860)
Q Consensus       842 ~~Llasgs~Dg~IrI  856 (860)
                      ++++++++.|+.|+|
T Consensus       334 ~~~l~s~~~d~~i~i  348 (430)
T 2xyi_A          334 ETILASSGTDRRLHV  348 (430)
T ss_dssp             TTEEEEEETTSCCEE
T ss_pred             CCEEEEEeCCCcEEE
Confidence            888999999999886

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.92  E-value=1.3e-24  Score=241.62  Aligned_cols=241  Identities=13%  Similarity=0.173  Sum_probs=179.9

Q ss_pred             ccceeeeeeecceeecccceeEEEEeeccch---hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc
Q psy4578         581 DLKLFLNFFKQGYFKGTHHIEEVMYLENKTR---AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS  657 (860)
Q Consensus       581 D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~---~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~  657 (860)
                      .+....+.++.|..++.      +.+|+...   .....+..|.+.|.+++|+| ++++|++|+.||.|++||+.++...
T Consensus        18 ~~s~~g~~l~~~~~d~~------i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~~~~   90 (377)
T 3dwl_C           18 AFNSQRTEFVTTTATNQ------VELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPDGTW   90 (377)
T ss_dssp             EECSSSSEEECCCSSSC------BCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC------CC
T ss_pred             EECCCCCEEEEecCCCE------EEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCCce
Confidence            34444445555544443      33344433   33444557788999999998 6889999999999999999986533


Q ss_pred             cCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC-CCCCeEEEEE
Q psy4578         658 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA-HTAEVNCLSF  736 (860)
Q Consensus       658 ~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~-h~~~I~sl~~  736 (860)
                      .....+.+|...|++++|+|++.. +++|+.|+.               |++||++++........+.+ |...|.+++|
T Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~---------------i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~  154 (377)
T 3dwl_C           91 KQTLVLLRLNRAATFVRWSPNEDK-FAVGSGARV---------------ISVCYFEQENDWWVSKHLKRPLRSTILSLDW  154 (377)
T ss_dssp             CCEEECCCCSSCEEEEECCTTSSC-CEEEESSSC---------------EEECCC-----CCCCEEECSSCCSCEEEEEE
T ss_pred             eeeeEecccCCceEEEEECCCCCE-EEEEecCCe---------------EEEEEECCcccceeeeEeecccCCCeEEEEE
Confidence            456677889999999999999985 899999998               99999998754345667777 9999999999


Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCc-----------------eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEE
Q psy4578         737 NPYSEYILATGSADKTVALWDLRNLK-----------------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV  799 (860)
Q Consensus       737 sp~g~~llasgs~Dg~I~IWDl~~~~-----------------~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~i  799 (860)
                      +|++. ++++|+.||.|++||++...                 ..+..+ +|...|++++|+|+|++ |++|+.||.|++
T Consensus       155 ~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~-l~~~~~d~~i~i  231 (377)
T 3dwl_C          155 HPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA-LAYAGHDSSVTI  231 (377)
T ss_dssp             CTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC-EEEEETTTEEC-
T ss_pred             cCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE-EEEEeCCCcEEE
Confidence            99998 59999999999999986321                 124445 89999999999999986 899999999999


Q ss_pred             EECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeecc
Q psy4578         800 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPF  858 (860)
Q Consensus       800 Wdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~f  858 (860)
                      ||+.+....          ...+..+.+|...|.+++|+|+|+ ++++|++|+.+.+..
T Consensus       232 wd~~~~~~~----------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~~  279 (377)
T 3dwl_C          232 AYPSAPEQP----------PRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPILLQG  279 (377)
T ss_dssp             CEECSTTSC----------EEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEEEECC
T ss_pred             EECCCCCCc----------ceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEEEEEe
Confidence            999985431          112445567999999999999998 578999999987754

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.9e-24  Score=250.89  Aligned_cols=220  Identities=12%  Similarity=0.168  Sum_probs=174.5

Q ss_pred             eEEEEeeccchhhhh----h-hhhcccceeeeEeecc-----CCcEEEEEeCCCcEEEEEcCCCCcc--------cCeee
Q psy4578         601 EEVMYLENKTRAQIC----Q-LLDKLRLLIDVAWHLL-----HESLFGSVADDQKLMIWDTRSHNVS--------KPSHT  662 (860)
Q Consensus       601 ~~il~l~n~~~~~l~----~-l~~~~~~V~~v~~sp~-----~~~~lasgs~DG~I~IWd~~~~~~~--------~~~~~  662 (860)
                      ...+.+|+....+..    . +..+.+.|.+++|+|.     ++.+||+|+.||+|++||+.++...        .+...
T Consensus       182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~  261 (524)
T 2j04_B          182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLT  261 (524)
T ss_dssp             CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEE
T ss_pred             CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEE
Confidence            344566666554431    1 2344578999999994     2579999999999999999865321        23346


Q ss_pred             ccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEE--EEcCCC
Q psy4578         663 VDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCL--SFNPYS  740 (860)
Q Consensus       663 ~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl--~~sp~g  740 (860)
                      +.+|...|++++|++++  .|++|+.||+               |++||++++.  .+...+.+|...|+++  +|+|++
T Consensus       262 l~~h~~~v~sv~~s~~~--~lasgs~Dgt---------------V~lWD~~~~~--~~~~~~~~H~~~V~sv~~~~s~~g  322 (524)
T 2j04_B          262 LSLADSLITTFDFLSPT--TVVCGFKNGF---------------VAEFDLTDPE--VPSFYDQVHDSYILSVSTAYSDFE  322 (524)
T ss_dssp             ECCTTTCEEEEEESSSS--EEEEEETTSE---------------EEEEETTBCS--SCSEEEECSSSCEEEEEEECCTTS
T ss_pred             EEcCCCCEEEEEecCCC--eEEEEeCCCE---------------EEEEECCCCC--CceEEeecccccEEEEEEEcCCCC
Confidence            77899999999999854  4899999999               9999998753  3445678999999999  578887


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCceeeEEeccCCC--ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578         741 EYILATGSADKTVALWDLRNLKLKLHSFESHKD--EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  818 (860)
Q Consensus       741 ~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~--~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~  818 (860)
                      ..+||||+.||+|+|||++++.. ...+.+|..  .|.+++|+|++.. +++++.|++|++||+++..            
T Consensus       323 ~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~------------  388 (524)
T 2j04_B          323 DTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAF------------  388 (524)
T ss_dssp             CCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTT------------
T ss_pred             CeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECcccc------------
Confidence            34799999999999999998775 455556653  5889999999985 8899999999999998733            


Q ss_pred             CccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       819 ~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                        ++..+.+|.+.|++++|+|+|++ +++|+.|++|++
T Consensus       389 --~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~l  423 (524)
T 2j04_B          389 --AVHPLVSRETTITAIGVSRLHPM-VLAGSADGSLII  423 (524)
T ss_dssp             --CCEEEEECSSCEEEEECCSSCCB-CEEEETTTEEEC
T ss_pred             --cceeeecCCCceEEEEeCCCCCe-EEEEECCCEEEE
Confidence              23455689999999999999995 779999999986

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.92  E-value=5.8e-24  Score=233.19  Aligned_cols=247  Identities=18%  Similarity=0.252  Sum_probs=192.7

Q ss_pred             eEEEEeeccchhhhh--hhhhcccceeeeEeeccC--CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEE-
Q psy4578         601 EEVMYLENKTRAQIC--QLLDKLRLLIDVAWHLLH--ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF-  675 (860)
Q Consensus       601 ~~il~l~n~~~~~l~--~l~~~~~~V~~v~~sp~~--~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~-  675 (860)
                      ...+.+|+....+..  ...+|...|.+++|+|++  +.++++|+.||.|++||+.++.  ..+..+.+|...|.++.| 
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~  120 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE--MPVYSVKGHKEIINAIDGI  120 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS--SCSEEECCCSSCEEEEEEE
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC--ccEEEEEecccceEEEeec
Confidence            345566666555443  334677899999999953  7899999999999999998753  256778899999999965 


Q ss_pred             -----ccCCCeEEEEEeCCCceeeeccccc------------------------------------ccCCCcEEEEeCCC
Q psy4578         676 -----NPYSEYILATGSADKTQFEVEEEEE------------------------------------ENYDQKLMIWDTRS  714 (860)
Q Consensus       676 -----sp~g~~llasgs~Dg~i~~~~~~~~------------------------------------~~~dg~I~iwDl~~  714 (860)
                           +|+++ .+++|+.||.+.+|+....                                    +..+|.|++||+++
T Consensus       121 ~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~  199 (357)
T 3i2n_A          121 GGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN  199 (357)
T ss_dssp             SGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT
T ss_pred             cccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc
Confidence                 67787 4899999999999976542                                    12368899999988


Q ss_pred             CCCCCCeeeecCCCCCeEEEEEcC---CCCcEEEEeeCCCcEEEEeCCCCceeeEE-----eccCCCceEEEEEcCCCCC
Q psy4578         715 HNVSKPSHTVDAHTAEVNCLSFNP---YSEYILATGSADKTVALWDLRNLKLKLHS-----FESHKDEIFQVQWSPHNET  786 (860)
Q Consensus       715 ~~~~~~~~~~~~h~~~I~sl~~sp---~g~~llasgs~Dg~I~IWDl~~~~~~~~~-----~~~h~~~V~~l~fsp~g~~  786 (860)
                      +.   . .....|...|.+++|+|   ++.. +++|+.||.|++||+++... ...     +.+|...|++++|+|+++.
T Consensus       200 ~~---~-~~~~~~~~~v~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~  273 (357)
T 3i2n_A          200 MA---L-RWETNIKNGVCSLEFDRKDISMNK-LVATSLEGKFHVFDMRTQHP-TKGFASVSEKAHKSTVWQVRHLPQNRE  273 (357)
T ss_dssp             TE---E-EEEEECSSCEEEEEESCSSSSCCE-EEEEESTTEEEEEEEEEEET-TTEEEEEEEECCSSCEEEEEEETTEEE
T ss_pred             Cc---e-eeecCCCCceEEEEcCCCCCCCCE-EEEECCCCeEEEEeCcCCCc-ccceeeeccCCCcCCEEEEEECCCCCc
Confidence            63   2 34467889999999999   7884 89999999999999987654 333     3489999999999999986


Q ss_pred             EEEEEECCCcEEEEECCCCCccccccccc-----CCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         787 ILASSGTDRRLHVWDLSKIGEEQSTEDAE-----DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       787 lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~-----~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++++|+.||.|++||++............     .+....+....+|.+.|++++|+|+|++++++++.|+.|+|
T Consensus       274 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i  348 (357)
T 3i2n_A          274 LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRV  348 (357)
T ss_dssp             EEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred             EEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence            69999999999999998755432221111     11224677788999999999999999987669999999986

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.92  E-value=6.4e-24  Score=230.39  Aligned_cols=220  Identities=20%  Similarity=0.338  Sum_probs=174.0

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-ccCeeeccCCCCCeeEEEEcc--CCCeEEEEEeCCCceee
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNP--YSEYILATGSADKTQFE  694 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-~~~~~~~~~h~~~V~~l~~sp--~g~~llasgs~Dg~i~~  694 (860)
                      .+|.+.|++++|+| ++.+|++|+.||.|++||+.++.. ......+.+|...|++++|+|  ++. ++++|+.||.   
T Consensus         8 ~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~~dg~---   82 (351)
T 3f3f_A            8 SGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR-IIASASYDKT---   82 (351)
T ss_dssp             CCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEETTSC---
T ss_pred             cccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC-EEEEEcCCCe---
Confidence            46778999999998 788999999999999999986432 134566788999999999999  466 5899999999   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCC------CCeeeecCCCCCeEEEEEcCC--CCcEEEEeeCCCcEEEEeCCCCce---
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVS------KPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTVALWDLRNLKL---  763 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~------~~~~~~~~h~~~I~sl~~sp~--g~~llasgs~Dg~I~IWDl~~~~~---  763 (860)
                                  |++||+.++...      ..+..+.+|...|.+++|+|+  +. ++++|+.||.|++||+++...   
T Consensus        83 ------------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A           83 ------------VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRS  149 (351)
T ss_dssp             ------------EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTC
T ss_pred             ------------EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcc
Confidence                        999999875321      236677889999999999999  87 599999999999999875431   


Q ss_pred             --------------------------------------------------------eeEEeccCCCceEEEEEcCCCC--
Q psy4578         764 --------------------------------------------------------KLHSFESHKDEIFQVQWSPHNE--  785 (860)
Q Consensus       764 --------------------------------------------------------~~~~~~~h~~~V~~l~fsp~g~--  785 (860)
                                                                              .+..+.+|...|++++|+|++.  
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~  229 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW  229 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred             ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence                                                                    1344567899999999999982  


Q ss_pred             -CEEEEEECCCcEEEEECCCCCcccccccc--------------------------------cCCCCccEEEecCccCce
Q psy4578         786 -TILASSGTDRRLHVWDLSKIGEEQSTEDA--------------------------------EDGPPELLFIHGGHTAKI  832 (860)
Q Consensus       786 -~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~--------------------------------~~~~~~~i~~~~~h~~~I  832 (860)
                       .+|++|+.||.|++||++...........                                .......+..+.+|.+.|
T Consensus       230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  309 (351)
T 3f3f_A          230 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV  309 (351)
T ss_dssp             SEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCE
T ss_pred             ceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE
Confidence             36999999999999999874322111100                                001125667778999999


Q ss_pred             EEEEEccCCCeEEEEEeCCCeEee
Q psy4578         833 SDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       833 ~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++++|+|++++ +++|+.||.|+|
T Consensus       310 ~~~~~s~~~~~-l~s~~~dg~v~i  332 (351)
T 3f3f_A          310 WSVSWNLTGTI-LSSAGDDGKVRL  332 (351)
T ss_dssp             EEEEECSSSCC-EEEEETTSCEEE
T ss_pred             EEEEEcCCCCE-EEEecCCCcEEE
Confidence            99999999994 779999999886

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.2e-24  Score=240.96  Aligned_cols=221  Identities=18%  Similarity=0.353  Sum_probs=182.8

Q ss_pred             EEEeeccch-----hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCC------cccCeeeccCCCCCee
Q psy4578         603 VMYLENKTR-----AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN------VSKPSHTVDAHTAEVN  671 (860)
Q Consensus       603 il~l~n~~~-----~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~------~~~~~~~~~~h~~~V~  671 (860)
                      .+.+|+...     ..+..+..|.+.|.+++|+|+++.++++|+.||.|++||+.++.      ..........|...|.
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI  169 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence            355565554     24555667888999999999658999999999999999998864      2222334567899999


Q ss_pred             EEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCC------CCCeEEEEEcCCCCcEEE
Q psy4578         672 CLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAH------TAEVNCLSFNPYSEYILA  745 (860)
Q Consensus       672 ~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h------~~~I~sl~~sp~g~~lla  745 (860)
                      +++|+|++..++++|+.||.               |++||++++   ..+..+..|      ...|.+++|+|++..+++
T Consensus       170 ~~~~~~~~~~~l~~~~~dg~---------------v~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  231 (416)
T 2pm9_A          170 SLAWNQSLAHVFASAGSSNF---------------ASIWDLKAK---KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA  231 (416)
T ss_dssp             EEEECSSCTTEEEEESSSSC---------------EEEEETTTT---EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred             EEEeCCCCCcEEEEEcCCCC---------------EEEEECCCC---CcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence            99999996557999999998               999999886   455555555      789999999999876799


Q ss_pred             EeeCCC---cEEEEeCCCCceeeEEec-cCCCceEEEEEcC-CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCc
Q psy4578         746 TGSADK---TVALWDLRNLKLKLHSFE-SHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE  820 (860)
Q Consensus       746 sgs~Dg---~I~IWDl~~~~~~~~~~~-~h~~~V~~l~fsp-~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~  820 (860)
                      +|+.|+   .|++||+++.......+. +|...|.+++|+| ++.. |++|+.||.|++||+++.              .
T Consensus       232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-l~s~~~dg~v~~wd~~~~--------------~  296 (416)
T 2pm9_A          232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL-LLSSGRDNTVLLWNPESA--------------E  296 (416)
T ss_dssp             EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC-EEEEESSSEEEEECSSSC--------------C
T ss_pred             EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe-EEEEeCCCCEEEeeCCCC--------------c
Confidence            999999   999999998755477777 8999999999999 7764 899999999999999873              3


Q ss_pred             cEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         821 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       821 ~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .+..+.+|...|++++|+|+++.++++++.|+.|++
T Consensus       297 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~i  332 (416)
T 2pm9_A          297 QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV  332 (416)
T ss_dssp             EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEE
T ss_pred             cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEE
Confidence            456677899999999999999557899999999986

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.92  E-value=3.2e-23  Score=223.66  Aligned_cols=267  Identities=21%  Similarity=0.397  Sum_probs=198.1

Q ss_pred             hcccc--cccCCCCCcccccceeeeeeecceeecccceeEEEEeeccchhhhhhhh---hcccceeeeEeeccCCcEEEE
Q psy4578         565 ELLPV--FRKLPSTVTQEDLKLFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLL---DKLRLLIDVAWHLLHESLFGS  639 (860)
Q Consensus       565 ~lL~~--f~~l~a~~~~~D~~l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~---~~~~~V~~v~~sp~~~~~las  639 (860)
                      +.+|.  ++.+.+|...+|++++.--+..+.+... .....+.+|+...++....+   +|...|++++|+| +++++++
T Consensus         7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~s   84 (318)
T 4ggc_A            7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAV   84 (318)
T ss_dssp             CCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEE
T ss_pred             cccCCCCCEEeeCCCCcccccceEEEECCCCEEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC-CCCEEEE
Confidence            44444  5666677666777543222222222211 22345777887776655543   4567799999998 7899999


Q ss_pred             EeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc-------------------
Q psy4578         640 VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE-------------------  700 (860)
Q Consensus       640 gs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~-------------------  700 (860)
                      |+.||+|++||++++   +.+..+.+|...+.++.+.  +. ++++|+.++.+..|.....                   
T Consensus        85 gs~Dg~v~iw~~~~~---~~~~~~~~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (318)
T 4ggc_A           85 GTSSAEVQLWDVQQQ---KRLRNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW  158 (318)
T ss_dssp             EETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             EECCCcEEEeecCCc---eeEEEecCccceEEEeecC--CC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence            999999999999984   5567778888888776665  44 5888988888777654432                   


Q ss_pred             ---------ccCCCcEEEEeCCCCCC-CCCeeeecCCCCCeEEEEEcCCCCcEE--EEeeCCCcEEEEeCCCCceeeEEe
Q psy4578         701 ---------ENYDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPYSEYIL--ATGSADKTVALWDLRNLKLKLHSF  768 (860)
Q Consensus       701 ---------~~~dg~I~iwDl~~~~~-~~~~~~~~~h~~~I~sl~~sp~g~~ll--asgs~Dg~I~IWDl~~~~~~~~~~  768 (860)
                               +..|+.|++||+++++. .........|.+.|.+++++|++..++  ++|+.++.|++||.+.... . ..
T Consensus       159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-~-~~  236 (318)
T 4ggc_A          159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-L-SA  236 (318)
T ss_dssp             CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-E-EE
T ss_pred             cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-c-cc
Confidence                     24578899999987642 234455677889999999999888655  4667889999999998775 3 33


Q ss_pred             ccCCCceEEEEEcCCCCCEEEEE-ECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEE
Q psy4578         769 ESHKDEIFQVQWSPHNETILASS-GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS  847 (860)
Q Consensus       769 ~~h~~~V~~l~fsp~g~~lL~tg-s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llas  847 (860)
                      ..+...+..+.|+|++..+++++ +.||.|++||+++              ..++..+.+|.+.|++++|+|+|++ ++|
T Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~--------------~~~~~~l~gH~~~V~~l~~spdg~~-l~S  301 (318)
T 4ggc_A          237 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--------------MAKVAELKGHTSRVLSLTMSPDGAT-VAS  301 (318)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSSC-EEE
T ss_pred             ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC--------------CcEEEEEcCCCCCEEEEEEcCCCCE-EEE
Confidence            45778899999999998744333 3799999999987              3456778899999999999999995 779


Q ss_pred             EeCCCeEee
Q psy4578         848 VSEDNIMQK  856 (860)
Q Consensus       848 gs~Dg~IrI  856 (860)
                      ||.||+|+|
T Consensus       302 ~s~D~~v~i  310 (318)
T 4ggc_A          302 AAADETLRL  310 (318)
T ss_dssp             EETTTEEEE
T ss_pred             EecCCeEEE
Confidence            999999986

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=2e-24  Score=235.57  Aligned_cols=207  Identities=22%  Similarity=0.320  Sum_probs=167.8

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCCceeee
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTQFEV  695 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg~i~~~  695 (860)
                      .+|.+.|++++|+| ++++|++|+.||+|++||+.++.. ..+..+.+|.+.|.+++|+++  +. +|++|+.|++    
T Consensus        10 ~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~-~~~~~l~gH~~~V~~v~~~~~~~~~-~l~s~s~D~~----   82 (316)
T 3bg1_A           10 TSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQ-ILIADLRGHEGPVWQVAWAHPMYGN-ILASCSYDRK----   82 (316)
T ss_dssp             ----CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEE-EEEEEEECCSSCEEEEEECCGGGSS-CEEEEETTSC----
T ss_pred             ccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCc-EEEEEEcCCCccEEEEEeCCCCCCC-EEEEEECCCE----
Confidence            46788999999998 789999999999999999987421 245678899999999999863  66 5999999999    


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC--CCcEEEEeeCCCcEEEEeCCCCce--eeEEeccC
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTVALWDLRNLKL--KLHSFESH  771 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~--g~~llasgs~Dg~I~IWDl~~~~~--~~~~~~~h  771 (860)
                                 |++||++++.. .....+.+|...|.+++|+|+  +. +|++|+.||+|++||++....  ....+.+|
T Consensus        83 -----------v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h  149 (316)
T 3bg1_A           83 -----------VIIWREENGTW-EKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVKKINNAH  149 (316)
T ss_dssp             -----------EEEECCSSSCC-CEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred             -----------EEEEECCCCcc-eEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence                       99999987532 355677889999999999998  55 599999999999999987632  13456689


Q ss_pred             CCceEEEEEcCCC-----------------CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578         772 KDEIFQVQWSPHN-----------------ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  834 (860)
Q Consensus       772 ~~~V~~l~fsp~g-----------------~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~  834 (860)
                      ...|.+++|+|++                 . +|++|+.|++|++||++....           ...+..+.+|.+.|.+
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~-----------~~~~~~l~~h~~~V~~  217 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQ-----------WKEEQKLEAHSDWVRD  217 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSC-----------EEEEECCBCCSSCEEE
T ss_pred             cCCcceEEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCc-----------cceeeecccCCCceEE
Confidence            9999999999973                 4 489999999999999865211           1245567789999999


Q ss_pred             EEEccCC---CeEEEEEeCCCeEee
Q psy4578         835 FSWNPNE---PWVICSVSEDNIMQK  856 (860)
Q Consensus       835 i~~spdg---~~Llasgs~Dg~IrI  856 (860)
                      ++|+|++   ..++++++.|+.|+|
T Consensus       218 v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          218 VAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             EECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             EEecCCCCCCCceEEEEcCCCeEEE
Confidence            9999987   236889999999986

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.92  E-value=2e-23  Score=235.02  Aligned_cols=209  Identities=17%  Similarity=0.365  Sum_probs=175.8

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc----cCeeeccCCCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS----KPSHTVDAHTAEVNCLSFNPYSEYILATGSADK  690 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~----~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg  690 (860)
                      ..+.+|.+.|++++|+|.++.+|++|+.||.|++||+.++...    ..+..+.+|...|++++|+|++..++++|+.||
T Consensus        75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg  154 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN  154 (402)
T ss_dssp             CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred             ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence            3355688999999999877899999999999999999875321    456778899999999999999865799999999


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCeeee--cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV--DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF  768 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~--~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~  768 (860)
                      .               |++||+.++   ..+..+  .+|...|.+++|+|++.. +++|+.||.|++||++++.. +..+
T Consensus       155 ~---------------i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~-~~~~  214 (402)
T 2aq5_A          155 V---------------ILVWDVGTG---AAVLTLGPDVHPDTIYSVDWSRDGAL-ICTSCRDKRVRVIEPRKGTV-VAEK  214 (402)
T ss_dssp             C---------------EEEEETTTT---EEEEEECTTTCCSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEE-EEEE
T ss_pred             E---------------EEEEECCCC---CccEEEecCCCCCceEEEEECCCCCE-EEEEecCCcEEEEeCCCCce-eeee
Confidence            8               999999986   566677  789999999999999995 89999999999999999886 6666


Q ss_pred             -ccCCCc-eEEEEEcCCCCCEEEEE---ECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578         769 -ESHKDE-IFQVQWSPHNETILASS---GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW  843 (860)
Q Consensus       769 -~~h~~~-V~~l~fsp~g~~lL~tg---s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~  843 (860)
                       .+|.+. +.+++|+|++. ++++|   +.|+.|++||+++....            .......|...|.+++|+|++.+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~  281 (402)
T 2aq5_A          215 DRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEP------------LSLQELDTSSGVLLPFFDPDTNI  281 (402)
T ss_dssp             ECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSC------------SEEEECCCCSSCEEEEEETTTTE
T ss_pred             ccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCC------------ceEEeccCCCceeEEEEcCCCCE
Confidence             678776 89999999997 47788   68999999999875431            11222356778999999999998


Q ss_pred             EEEEEeCCCeEee
Q psy4578         844 VICSVSEDNIMQK  856 (860)
Q Consensus       844 Llasgs~Dg~IrI  856 (860)
                      ++++|+.|+.|++
T Consensus       282 l~~~g~~dg~i~i  294 (402)
T 2aq5_A          282 VYLCGKGDSSIRY  294 (402)
T ss_dssp             EEEEETTCSCEEE
T ss_pred             EEEEEcCCCeEEE
Confidence            7788888998886

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.8e-24  Score=243.18  Aligned_cols=240  Identities=16%  Similarity=0.247  Sum_probs=184.6

Q ss_pred             eccchhhhhhh-hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC---CCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         607 ENKTRAQICQL-LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS---HNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       607 ~n~~~~~l~~l-~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~---~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      |+.....+..+ .+|.+.|++++|+|.++.+|++|+.||+|++||+.+   +........+ +|...|++++|+|++. .
T Consensus        48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~  125 (437)
T 3gre_A           48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD-A  125 (437)
T ss_dssp             GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS-E
T ss_pred             ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC-E
Confidence            45444444455 456689999999985688999999999999999976   3322223333 5899999999999888 4


Q ss_pred             EEEEeCCCceeeecccc---------------------------------------c-----ccCCCcEEEEeCCCCCCC
Q psy4578         683 LATGSADKTQFEVEEEE---------------------------------------E-----ENYDQKLMIWDTRSHNVS  718 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~---------------------------------------~-----~~~dg~I~iwDl~~~~~~  718 (860)
                      +++|+.||++.+|+...                                       .     +..++.|++||++++   
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---  202 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL---  202 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC---
T ss_pred             EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---
Confidence            89999999999997731                                       0     245789999999987   


Q ss_pred             CCeeeecC--CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec-cCCCceEEEEEcC----CCCCEEEEE
Q psy4578         719 KPSHTVDA--HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSP----HNETILASS  791 (860)
Q Consensus       719 ~~~~~~~~--h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~-~h~~~V~~l~fsp----~g~~lL~tg  791 (860)
                      ..+..+.+  |...|++++|+|++. ++++|+.||.|++||++++.. +..+. .|...|.+++|+|    ++. ++++|
T Consensus       203 ~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~  279 (437)
T 3gre_A          203 ERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVL-IRSWSFGDHAPITHVEVCQFYGKNSV-IVVGG  279 (437)
T ss_dssp             CEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEE-EEEEBCTTCEEEEEEEECTTTCTTEE-EEEEE
T ss_pred             eeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccE-EEEEecCCCCceEEEEeccccCCCcc-EEEEE
Confidence            66777777  889999999999998 499999999999999999776 66665 7888999996665    565 58999


Q ss_pred             ECCCcEEEEECCCCCcccccccccCCCCccEE----------EecC--ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         792 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF----------IHGG--HTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       792 s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~----------~~~~--h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +.||.|++||++++..................          .+.+  |...|++++|+ +++ ++++|+.|+.|++
T Consensus       280 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~  354 (437)
T 3gre_A          280 SSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVM  354 (437)
T ss_dssp             STTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEE
T ss_pred             cCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEE
Confidence            99999999999987655443322211111111          1223  88899999999 666 6889999999986

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=6.6e-24  Score=235.81  Aligned_cols=215  Identities=14%  Similarity=0.223  Sum_probs=167.1

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      +.++|++++|+| ++.+|++|+.||.|++||+.++. ......+.+|...|++++|+|++++ +++|+.||+        
T Consensus        10 ~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~d~~--------   78 (377)
T 3dwl_C           10 LPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNR-IVTCSQDRN--------   78 (377)
T ss_dssp             CSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCC-EEEEETTSS--------
T ss_pred             CCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCE-EEEEeCCCe--------
Confidence            346899999999 78899999999999999998741 1456677899999999999999985 899999998        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce--eeEEecc-CCCceE
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL--KLHSFES-HKDEIF  776 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~--~~~~~~~-h~~~V~  776 (860)
                             |++||+.++........+.+|...|.+++|+|++.. +++|+.||.|++||+++...  ....+.. |...|+
T Consensus        79 -------v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~  150 (377)
T 3dwl_C           79 -------AYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL  150 (377)
T ss_dssp             -------EEEC------CCCCEEECCCCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred             -------EEEEEcCCCCceeeeeEecccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence                   999999987533567778889999999999999995 89999999999999998763  2566676 999999


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC----CCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED----GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~----~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      +++|+|++.. |++|+.||.|++||+..............    ....++..+ +|.+.|++++|+|+|++ +++++.|+
T Consensus       151 ~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~-l~~~~~d~  227 (377)
T 3dwl_C          151 SLDWHPNNVL-LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA-LAYAGHDS  227 (377)
T ss_dssp             EEEECTTSSE-EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC-EEEEETTT
T ss_pred             EEEEcCCCCE-EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE-EEEEeCCC
Confidence            9999999984 89999999999999975443221111111    112345555 89999999999999995 77999999


Q ss_pred             eEee
Q psy4578         853 IMQK  856 (860)
Q Consensus       853 ~IrI  856 (860)
                      .|++
T Consensus       228 ~i~i  231 (377)
T 3dwl_C          228 SVTI  231 (377)
T ss_dssp             EEC-
T ss_pred             cEEE
Confidence            9886

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.91  E-value=2e-23  Score=252.63  Aligned_cols=227  Identities=21%  Similarity=0.305  Sum_probs=177.6

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      .+.+|...|.+++|+| ++.++++|+.||+|++||+.++   .....+.+|...|.+++|+|+++. +++|+.|++|.+|
T Consensus       425 ~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~---~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iw  499 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAG---VSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLW  499 (694)
T ss_dssp             EEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEE
T ss_pred             eecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCC---cceeEEeCCCCCEEEEEEeCCCCE-EEEEeCCCEEEEE
Confidence            4567888999999998 7899999999999999999884   556778899999999999999985 8999999999999


Q ss_pred             ccccc--------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcE
Q psy4578         696 EEEEE--------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  743 (860)
Q Consensus       696 ~~~~~--------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~l  743 (860)
                      +....                                ++.|+.|++||+++.   .....+.+|.+.|++++|+|++. +
T Consensus       500 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~---~~~~~~~~h~~~v~~v~~spdg~-~  575 (694)
T 3dm0_A          500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC---KLRSTLAGHTGYVSTVAVSPDGS-L  575 (694)
T ss_dssp             CTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-E
T ss_pred             ECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC---cEEEEEcCCCCCEEEEEEeCCCC-E
Confidence            75321                                235789999999876   66778899999999999999999 5


Q ss_pred             EEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCC----
Q psy4578         744 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP----  819 (860)
Q Consensus       744 lasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~----  819 (860)
                      +++|+.||+|++||++++.. +..+. +...|.+++|+|++.. +++ +.|+.|++||+.+...............    
T Consensus       576 l~sg~~Dg~i~iwd~~~~~~-~~~~~-~~~~v~~~~~sp~~~~-l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  651 (694)
T 3dm0_A          576 CASGGKDGVVLLWDLAEGKK-LYSLE-ANSVIHALCFSPNRYW-LCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKAD  651 (694)
T ss_dssp             EEEEETTSBCEEEETTTTEE-EECCB-CSSCEEEEEECSSSSE-EEE-EETTEEEEEETTTTEEEEEECCCCC-------
T ss_pred             EEEEeCCCeEEEEECCCCce-EEEec-CCCcEEEEEEcCCCcE-EEE-EcCCCEEEEECCCCCChhhhcccccccccccc
Confidence            99999999999999999876 55554 4568999999999863 544 4577799999998655433221110000    


Q ss_pred             -ccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         820 -ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       820 -~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                       ........+...+++++|+|+|++ +++|+.||.|+|
T Consensus       652 ~~~~~~~~~~~~~~~~l~~spdg~~-l~sgs~Dg~i~i  688 (694)
T 3dm0_A          652 NSGPAATKRKVIYCTSLNWSADGST-LFSGYTDGVIRV  688 (694)
T ss_dssp             ---------CCCCEEEEEECTTSSE-EEEEETTSEEEE
T ss_pred             ccccccCCceeEEeeeEEEcCCCCE-EEEEcCCCeEEE
Confidence             000011123345889999999995 779999999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.91  E-value=2.6e-23  Score=234.37  Aligned_cols=215  Identities=17%  Similarity=0.231  Sum_probs=174.0

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      .+++|+............+..+....|++ ++.+|++|+.||.|++||+.++   .....+.+|.+.|++++|+|+++ +
T Consensus        79 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~  153 (420)
T 3vl1_A           79 HDFLFNTIIRDGSKMLKRADYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFN---LQREIDQAHVSEITKLKFFPSGE-A  153 (420)
T ss_dssp             EEEEEECCSEETTTTSCSCCEEEEEEECS-SSCEEEEEETTSCEEEECTTSC---EEEEETTSSSSCEEEEEECTTSS-E
T ss_pred             cEEEEEecccceeeEEecCCceEEEEEec-CCCEEEEEECCCCEEEEeCCCc---ceeeecccccCccEEEEECCCCC-E
Confidence            46667766666665555554455556676 8899999999999999999874   45666789999999999999998 5


Q ss_pred             EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc
Q psy4578         683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK  762 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~  762 (860)
                      +++|+.||.               |++||+.++   ..+..+.+|...|.+++|+|++.. +++|+.||.|++||++++.
T Consensus       154 l~s~s~d~~---------------i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          154 LISSSQDMQ---------------LKIWSVKDG---SNPRTLIGHRATVTDIAIIDRGRN-VLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             EEEEETTSE---------------EEEEETTTC---CCCEEEECCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTTE
T ss_pred             EEEEeCCCe---------------EEEEeCCCC---cCceEEcCCCCcEEEEEEcCCCCE-EEEEcCCCcEEEeECCCCc
Confidence            899999998               999999987   566778899999999999999985 8899999999999999887


Q ss_pred             eeeEEecc---CCCceEE---------------------EEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578         763 LKLHSFES---HKDEIFQ---------------------VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  818 (860)
Q Consensus       763 ~~~~~~~~---h~~~V~~---------------------l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~  818 (860)
                      . +..+..   |...+.+                     ++|+|+|+. +++|+.||.|++||+++...           
T Consensus       215 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~-----------  281 (420)
T 3vl1_A          215 T-IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY-VIAGHVSGVITVHNVFSKEQ-----------  281 (420)
T ss_dssp             E-EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE-EEEEETTSCEEEEETTTCCE-----------
T ss_pred             e-eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE-EEEEcCCCeEEEEECCCCce-----------
Confidence            6 666654   3344444                     455788874 89999999999999987432           


Q ss_pred             CccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       819 ~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                        ......+|...|++++|+|++..++++|+.||.|++
T Consensus       282 --~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v  317 (420)
T 3vl1_A          282 --TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQ  317 (420)
T ss_dssp             --EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             --eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence              223334688999999999999966889999999986

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.91  E-value=3.7e-23  Score=250.33  Aligned_cols=204  Identities=20%  Similarity=0.355  Sum_probs=174.1

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc--ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV--SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      +.+|.+.|++++|+|+++++|+||+.||+|++|++.+...  ......+.+|...|++++|+|+++. +++|+.||+   
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~-l~sgs~Dg~---  453 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF-ALSGSWDGE---  453 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSE---
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCE-EEEEeCCCc---
Confidence            3468889999999997789999999999999999976432  2234567899999999999999985 899999999   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE---eccC
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS---FESH  771 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~---~~~h  771 (860)
                                  |++||+.++   .....+.+|...|.+++|+|++.+ +++|+.|++|++||...... ...   ..+|
T Consensus       454 ------------v~vwd~~~~---~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h  516 (694)
T 3dm0_A          454 ------------LRLWDLAAG---VSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECK-YTISEGGEGH  516 (694)
T ss_dssp             ------------EEEEETTTT---EEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEE-EEECSSTTSC
T ss_pred             ------------EEEEECCCC---cceeEEeCCCCCEEEEEEeCCCCE-EEEEeCCCEEEEEECCCCcc-eeeccCCCCC
Confidence                        999999886   567788899999999999999996 89999999999999876543 222   2468


Q ss_pred             CCceEEEEEcCCCC-CEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578         772 KDEIFQVQWSPHNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       772 ~~~V~~l~fsp~g~-~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~  850 (860)
                      ...|.+++|+|++. ..+++|+.||+|++||+++.              .+...+.+|.+.|++++|+|+|+ ++++|+.
T Consensus       517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~--------------~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~  581 (694)
T 3dm0_A          517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC--------------KLRSTLAGHTGYVSTVAVSPDGS-LCASGGK  581 (694)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC--------------CEEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred             CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC--------------cEEEEEcCCCCCEEEEEEeCCCC-EEEEEeC
Confidence            88999999999873 36899999999999999873              34566788999999999999999 5889999


Q ss_pred             CCeEee
Q psy4578         851 DNIMQK  856 (860)
Q Consensus       851 Dg~IrI  856 (860)
                      |+.|++
T Consensus       582 Dg~i~i  587 (694)
T 3dm0_A          582 DGVVLL  587 (694)
T ss_dssp             TSBCEE
T ss_pred             CCeEEE
Confidence            999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.6e-23  Score=233.49  Aligned_cols=223  Identities=21%  Similarity=0.373  Sum_probs=180.2

Q ss_pred             EEEeeccchhh---hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-ccCeeeccCCCCCeeEEEEccC
Q psy4578         603 VMYLENKTRAQ---ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPY  678 (860)
Q Consensus       603 il~l~n~~~~~---l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-~~~~~~~~~h~~~V~~l~~sp~  678 (860)
                      .+.+|+.....   ......|...|.+++|+| ++.+|++|+.||.|++||+.+... ......+.+|...|++++|+|+
T Consensus        46 ~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  124 (416)
T 2pm9_A           46 SLELWSLLAADSEKPIASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK  124 (416)
T ss_dssp             CCEEEESSSGGGCSCSCCCCCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS
T ss_pred             eEEEEEccCCCCCcEEEEEecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCC
Confidence            34555554443   455567888999999998 788999999999999999987322 2356778899999999999998


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCC------CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHN------VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  752 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~------~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~  752 (860)
                      +..++++|+.||.               |++||+.+..      .........+|...|.+++|+|++..++++|+.||.
T Consensus       125 ~~~~l~s~~~dg~---------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  189 (416)
T 2pm9_A          125 QDNVLASGGNNGE---------------IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNF  189 (416)
T ss_dssp             STTBEEEECSSSC---------------EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSC
T ss_pred             CCCEEEEEcCCCe---------------EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCC
Confidence            4446999999998               9999998864      222333456799999999999996557999999999


Q ss_pred             EEEEeCCCCceeeEEeccC------CCceEEEEEcCCCCCEEEEEECCC---cEEEEECCCCCcccccccccCCCCccEE
Q psy4578         753 VALWDLRNLKLKLHSFESH------KDEIFQVQWSPHNETILASSGTDR---RLHVWDLSKIGEEQSTEDAEDGPPELLF  823 (860)
Q Consensus       753 I~IWDl~~~~~~~~~~~~h------~~~V~~l~fsp~g~~lL~tgs~Dg---~I~iWdl~~~~~~~~~~~~~~~~~~~i~  823 (860)
                      |++||++++.. +..+..|      ...|.+++|+|++..++++++.|+   .|++||+++...             ++.
T Consensus       190 v~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-------------~~~  255 (416)
T 2pm9_A          190 ASIWDLKAKKE-VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-------------PLQ  255 (416)
T ss_dssp             EEEEETTTTEE-EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-------------CSB
T ss_pred             EEEEECCCCCc-ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-------------CcE
Confidence            99999999876 6666665      789999999999877799999998   999999987432             223


Q ss_pred             Eec-CccCceEEEEEcc-CCCeEEEEEeCCCeEee
Q psy4578         824 IHG-GHTAKISDFSWNP-NEPWVICSVSEDNIMQK  856 (860)
Q Consensus       824 ~~~-~h~~~I~~i~~sp-dg~~Llasgs~Dg~IrI  856 (860)
                      .+. +|...|++++|+| ++. ++++++.|+.|++
T Consensus       256 ~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~  289 (416)
T 2pm9_A          256 TLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLL  289 (416)
T ss_dssp             CCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEE
T ss_pred             EeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEE
Confidence            344 7899999999999 777 5779999999886

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=1.4e-23  Score=239.42  Aligned_cols=182  Identities=18%  Similarity=0.274  Sum_probs=146.8

Q ss_pred             EEeeccchhh---hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         604 MYLENKTRAQ---ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       604 l~l~n~~~~~---l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      +.+|+.....   .....+|.+.|++++|+|.++.+|++|+.||+|++||++++.. ........+...+.+++|+|++.
T Consensus       144 i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  222 (435)
T 4e54_B          144 IMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR  222 (435)
T ss_dssp             EEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT
T ss_pred             EEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC
Confidence            5556554332   3445678899999999997889999999999999999976321 22222233455688999999998


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN  760 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~  760 (860)
                       ++++|+.||.               |++||++.    +.+..+.+|...|++++|+|++..++++|+.||.|++||+++
T Consensus       223 -~l~~g~~dg~---------------i~~wd~~~----~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          223 -MVVTGDNVGN---------------VILLNMDG----KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ  282 (435)
T ss_dssp             -EEEEECSSSB---------------EEEEESSS----CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred             -EEEEEeCCCc---------------EeeeccCc----ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence             5899999998               99999975    445677899999999999999988899999999999999987


Q ss_pred             Ccee--eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578         761 LKLK--LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       761 ~~~~--~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~  807 (860)
                      ....  .....+|...|++++|+|+|.+ |++|+.||.|++||+.++..
T Consensus       283 ~~~~~~~~~~~~h~~~v~~~~~spdg~~-l~s~~~D~~i~iwd~~~~~~  330 (435)
T 4e54_B          283 VRGKASFLYSLPHRHPVNAACFSPDGAR-LLTTDQKSEIRVYSASQWDC  330 (435)
T ss_dssp             CCSSSCCSBCCBCSSCEEECCBCTTSSE-EEEEESSSCEEEEESSSSSS
T ss_pred             ccccceEEEeeeccccccceeECCCCCe-eEEEcCCCEEEEEECCCCcc
Confidence            6541  2334579999999999999985 89999999999999987543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.9e-22  Score=221.55  Aligned_cols=227  Identities=16%  Similarity=0.206  Sum_probs=185.8

Q ss_pred             EEEeeccchhhhhh-hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQICQ-LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~l~~-l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .+.+|+....+... +..|.+.|.+++|+| ++.+|++++.||.|++||+.++   ..+..+. +...+.+++|+|++.+
T Consensus        55 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~  129 (369)
T 3zwl_B           55 SASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNG---QCVATWK-SPVPVKRVEFSPCGNY  129 (369)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC---CEEEEEE-CSSCEEEEEECTTSSE
T ss_pred             EEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---cEEEEee-cCCCeEEEEEccCCCE
Confidence            35556655444443 445778999999998 7889999999999999999885   3344444 7889999999999995


Q ss_pred             EEEEEeCC-----Cceeeeccccc----------------------------------------ccCCCcEEEEeCCCCC
Q psy4578         682 ILATGSAD-----KTQFEVEEEEE----------------------------------------ENYDQKLMIWDTRSHN  716 (860)
Q Consensus       682 llasgs~D-----g~i~~~~~~~~----------------------------------------~~~dg~I~iwDl~~~~  716 (860)
                       +++++.+     |.+.+|+....                                        +..+|.|++||+++. 
T Consensus       130 -l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-  207 (369)
T 3zwl_B          130 -FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-  207 (369)
T ss_dssp             -EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-
T ss_pred             -EEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-
Confidence             7778777     88888876532                                        235788999999873 


Q ss_pred             CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCC-
Q psy4578         717 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR-  795 (860)
Q Consensus       717 ~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg-  795 (860)
                       ...+..+..|...|.+++|+|++.+ |++|+.||.|++||++++.. +..+. +...+.+++|+|++++ +++++.++ 
T Consensus       208 -~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~~  282 (369)
T 3zwl_B          208 -YEYVDSIDLHEKSISDMQFSPDLTY-FITSSRDTNSFLVDVSTLQV-LKKYE-TDCPLNTAVITPLKEF-IILGGGQEA  282 (369)
T ss_dssp             -TEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCE-EEEEE-CSSCEEEEEECSSSSE-EEEEECCC-
T ss_pred             -cEeEEEEecCCCceeEEEECCCCCE-EEEecCCceEEEEECCCCce-eeeec-CCCCceeEEecCCCce-EEEeecCCC
Confidence             1567778889999999999999985 89999999999999999886 55555 7889999999999986 77888777 


Q ss_pred             -------------cEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         796 -------------RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       796 -------------~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                                   .+++||..+.              ..+..+.+|.+.|++++|+|+|+ ++++++.||.|++
T Consensus       283 ~~~~~~~~~~~~~~i~~~d~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~i  341 (369)
T 3zwl_B          283 KDVTTTSANEGKFEARFYHKIFE--------------EEIGRVQGHFGPLNTVAISPQGT-SYASGGEDGFIRL  341 (369)
T ss_dssp             ------------CEEEEEETTTC--------------CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEE
T ss_pred             ceEEEEecCCCcceeEEEecCCC--------------cchhheecccCcEEEEEECCCCC-EEEEEcCCCeEEE
Confidence                         8999998773              44566778999999999999999 5779999999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.91  E-value=1e-22  Score=239.53  Aligned_cols=224  Identities=24%  Similarity=0.450  Sum_probs=188.4

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      .+.+|+.....+..+.+|.+.|.+++|+| ++..+++++.||.|++||...    ..+..+.+|...+.+++|+|++.. 
T Consensus       285 ~i~~w~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~----~~~~~~~~~~~~v~~~~~s~~g~~-  358 (577)
T 2ymu_A          285 TVKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG----QHLQTLTGHSSSVWGVAFSPDGQT-  358 (577)
T ss_dssp             CEEEEETTSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS----CEEEEECCCSSCEEEEEECTTSSE-
T ss_pred             EEEEEeCCCcEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC----CeeEEEeCCCCCEEEEEECCCCCE-
Confidence            34556655555555667888999999998 788999999999999999865    345667889999999999999985 


Q ss_pred             EEEEeCCCceeeeccccc--------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578         683 LATGSADKTQFEVEEEEE--------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  736 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~--------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~  736 (860)
                      +++|+.||.+.+|+....                          +..++.|++||...    +.+..+.+|...|++++|
T Consensus       359 l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~----~~~~~~~~~~~~v~~~~~  434 (577)
T 2ymu_A          359 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVWGVAF  434 (577)
T ss_dssp             EEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC----CEEEEEECCSSCEEEEEE
T ss_pred             EEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC----CEEEEecCCCCCeEEEEE
Confidence            899999999999875422                          24578899999643    567788899999999999


Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC
Q psy4578         737 NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED  816 (860)
Q Consensus       737 sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~  816 (860)
                      +|++.. +++++.|+.|++||... .. +..+.+|...|++++|+|+++. |++++.|+.|++||...            
T Consensus       435 s~d~~~-l~~~~~d~~v~~w~~~~-~~-~~~~~~~~~~v~~~~~spd~~~-las~~~d~~i~iw~~~~------------  498 (577)
T 2ymu_A          435 SPDDQT-IASASDDKTVKLWNRNG-QL-LQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNG------------  498 (577)
T ss_dssp             CTTSSE-EEEEETTSEEEEEETTS-CE-EEEEECCSSCEEEEEECTTSCE-EEEEETTSEEEEEETTS------------
T ss_pred             CCCCCE-EEEEcCCCEEEEEECCC-CE-EEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCEEEEEcCCC------------
Confidence            999994 99999999999999754 33 6778899999999999999985 89999999999999542            


Q ss_pred             CCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         817 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       817 ~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                         .++..+.+|...|++++|+|+|++ +++++.|+.|++
T Consensus       499 ---~~~~~~~~h~~~v~~l~~s~dg~~-l~s~~~dg~v~l  534 (577)
T 2ymu_A          499 ---QLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKL  534 (577)
T ss_dssp             ---CEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEE
T ss_pred             ---CEEEEEeCCCCCEEEEEEcCCCCE-EEEEECcCEEEE
Confidence               356677789999999999999995 779999999986

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=8.5e-24  Score=246.95  Aligned_cols=215  Identities=10%  Similarity=0.079  Sum_probs=164.6

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEE--EEccCCCeEEEEEeCCCceee
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCL--SFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l--~~sp~g~~llasgs~Dg~i~~  694 (860)
                      +..|...|++++|++ + ..|++|+.||+|++||++++.  .+...+.+|...|+++  .|+|++..+|++|+.|++   
T Consensus       262 l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~--~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t---  334 (524)
T 2j04_B          262 LSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPE--VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY---  334 (524)
T ss_dssp             ECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCS--SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE---
T ss_pred             EEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCC--CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe---
Confidence            345678899999997 3 489999999999999998752  3445678899999999  567877457999999999   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCC--CeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA--EVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK  772 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~--~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~  772 (860)
                                  |++||++++   .....+.+|..  .|.+++|+|++.. +++|+.|++|++||++++.. +..+.+|.
T Consensus       335 ------------vklWD~~~~---~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~-~~~l~gH~  397 (524)
T 2j04_B          335 ------------FYIFNPKDI---ATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFA-VHPLVSRE  397 (524)
T ss_dssp             ------------EEEECGGGH---HHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTC-CEEEEECS
T ss_pred             ------------EEEEECCCC---CcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECccccc-ceeeecCC
Confidence                        999999876   33444555543  5889999999985 88999999999999999876 67788899


Q ss_pred             CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc--------------ccccccCC----------------CCccE
Q psy4578         773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ--------------STEDAEDG----------------PPELL  822 (860)
Q Consensus       773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~--------------~~~~~~~~----------------~~~~i  822 (860)
                      +.|++++|+|+|+. |++|+.||+|++||+...-...              .+....++                ....+
T Consensus       398 ~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~  476 (524)
T 2j04_B          398 TTITAIGVSRLHPM-VLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSK  476 (524)
T ss_dssp             SCEEEEECCSSCCB-CEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC--------
T ss_pred             CceEEEEeCCCCCe-EEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcce
Confidence            99999999999986 8899999999999975421110              01111111                13345


Q ss_pred             EEecCccCceEEEEEccCCC--eEEEEEeCCCeEee
Q psy4578         823 FIHGGHTAKISDFSWNPNEP--WVICSVSEDNIMQK  856 (860)
Q Consensus       823 ~~~~~h~~~I~~i~~spdg~--~Llasgs~Dg~IrI  856 (860)
                      ..+.+|.+.|.+++|+|++.  .++|+|+.||+|||
T Consensus       477 ~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl  512 (524)
T 2j04_B          477 AKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL  512 (524)
T ss_dssp             -----CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred             eeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence            66778999999999999964  36899999999997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.2e-22  Score=225.54  Aligned_cols=209  Identities=14%  Similarity=0.248  Sum_probs=180.6

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      |.+.|++++|+| ++.+|++|+.||.|++||. +   ...+..+.+|...|.+++|+|++++ +++++.||.+.+|+...
T Consensus       107 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~-~---~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          107 TTNQVTCLAWSH-DGNSIVTGVENGELRLWNK-T---GALLNVLNFHRAPIVSVKWNKDGTH-IISMDVENVTILWNVIS  180 (425)
T ss_dssp             -CBCEEEEEECT-TSSEEEEEETTSCEEEEET-T---SCEEEEECCCCSCEEEEEECTTSSE-EEEEETTCCEEEEETTT
T ss_pred             CCCceEEEEEcC-CCCEEEEEeCCCeEEEEeC-C---CCeeeeccCCCccEEEEEECCCCCE-EEEEecCCeEEEEECCC
Confidence            456899999998 7899999999999999993 3   3556778889999999999999985 88999999999998753


Q ss_pred             c-----------------------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC
Q psy4578         700 E-----------------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  738 (860)
Q Consensus       700 ~-----------------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp  738 (860)
                      .                                         +..+|.|++||+.++   ..+..+.+|...|.+++|+|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~  257 (425)
T 1r5m_A          181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK---TPTGKLIGHHGPISVLEFND  257 (425)
T ss_dssp             TEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS---SCSEEECCCSSCEEEEEEET
T ss_pred             CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC---ceeeeeccCCCceEEEEECC
Confidence            2                                         134678999999986   56677888999999999999


Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578         739 YSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  818 (860)
Q Consensus       739 ~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~  818 (860)
                      ++. .+++|+.||.|++||++++.. ...+.+|...|.+++|+|++  ++++++.||.|++||+++.             
T Consensus       258 ~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~-------------  320 (425)
T 1r5m_A          258 TNK-LLLSASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQN-------------  320 (425)
T ss_dssp             TTT-EEEEEETTSCEEEECSSSBSC-SEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTT-------------
T ss_pred             CCC-EEEEEcCCCEEEEEECCCCcc-ceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCC-------------
Confidence            998 599999999999999998876 77888899999999999999  5899999999999999873             


Q ss_pred             CccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         819 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       819 ~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                       ..+.....|...|.+++|+|+++ ++++++.||.|++
T Consensus       321 -~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i  356 (425)
T 1r5m_A          321 -TLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNV  356 (425)
T ss_dssp             -EEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred             -cEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEE
Confidence             34556667889999999999999 5778899998876

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=8.2e-23  Score=225.69  Aligned_cols=213  Identities=23%  Similarity=0.352  Sum_probs=172.3

Q ss_pred             hhhhhhcccceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCC
Q psy4578         614 ICQLLDKLRLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADK  690 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg  690 (860)
                      +..+..|.+.|++++|+++ ++.+|++|+.||.|++||+.++.. .....+..|...|.+++|+|+  +. ++++|+.||
T Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~  125 (379)
T 3jrp_A           48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDG  125 (379)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTS
T ss_pred             eeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCC
Confidence            3345567889999999863 388999999999999999987531 256677789999999999998  77 589999999


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC-------------CCCcEEEEeeCCCcEEEEe
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP-------------YSEYILATGSADKTVALWD  757 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp-------------~g~~llasgs~Dg~I~IWD  757 (860)
                      .               |++||+++... .....+.+|...|.+++|+|             ++. ++++|+.||.|++||
T Consensus       126 ~---------------i~v~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d  188 (379)
T 3jrp_A          126 K---------------VSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWK  188 (379)
T ss_dssp             E---------------EEEEECCTTSC-CCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEE
T ss_pred             c---------------EEEEecCCCCc-eeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEE
Confidence            8               99999987643 34456778999999999999             577 599999999999999


Q ss_pred             CCCCce---eeEEeccCCCceEEEEEcCC---CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCc
Q psy4578         758 LRNLKL---KLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK  831 (860)
Q Consensus       758 l~~~~~---~~~~~~~h~~~V~~l~fsp~---g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~  831 (860)
                      +++...   ....+.+|...|.+++|+|+   +. +|++++.||.|++||+++......         ........|...
T Consensus       189 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~~~  258 (379)
T 3jrp_A          189 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWK---------KTLLKEEKFPDV  258 (379)
T ss_dssp             EETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEEEEESSTTSCCE---------EEESSSSCCSSC
T ss_pred             ecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEEEeCCCCCccce---------eeeeccccCCCc
Confidence            987653   24567889999999999999   65 599999999999999987432111         112223458889


Q ss_pred             eEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         832 ISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       832 I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |++++|+|+|++ +++++.||.|++
T Consensus       259 v~~~~~s~~g~~-l~~~~~dg~i~i  282 (379)
T 3jrp_A          259 LWRASWSLSGNV-LALSGGDNKVTL  282 (379)
T ss_dssp             EEEEEECSSSCC-EEEEESSSSEEE
T ss_pred             EEEEEEcCCCCE-EEEecCCCcEEE
Confidence            999999999995 667888998876

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.91  E-value=1e-22  Score=224.83  Aligned_cols=218  Identities=16%  Similarity=0.210  Sum_probs=174.5

Q ss_pred             EEEEeeccchh---hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578         602 EVMYLENKTRA---QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  678 (860)
Q Consensus       602 ~il~l~n~~~~---~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~  678 (860)
                      ..+.+|+....   .+..+..|...|.+++|+| ++.++++|+.||.|++||+.+++. .....+..|...|.+++|+|+
T Consensus        30 ~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~  107 (372)
T 1k8k_C           30 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTW-KPTLVILRINRAARCVRWAPN  107 (372)
T ss_dssp             SEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEE-EEEEECCCCSSCEEEEEECTT
T ss_pred             CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCee-eeeEEeecCCCceeEEEECCC
Confidence            34556666555   4445556788999999998 789999999999999999987532 223344678999999999999


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeee-ecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT-VDAHTAEVNCLSFNPYSEYILATGSADKTVALWD  757 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~-~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD  757 (860)
                      +++ +++|+.||.               |++||+........... ..+|...|.+++|+|++. .+++|+.||.|++||
T Consensus       108 ~~~-l~~~~~d~~---------------v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d  170 (372)
T 1k8k_C          108 EKK-FAVGSGSRV---------------ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFS  170 (372)
T ss_dssp             SSE-EEEEETTSS---------------EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred             CCE-EEEEeCCCE---------------EEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEE
Confidence            985 899999998               99999987632112223 367899999999999998 499999999999999


Q ss_pred             CC------------------CCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCC
Q psy4578         758 LR------------------NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP  819 (860)
Q Consensus       758 l~------------------~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~  819 (860)
                      ++                  .+.. +..+.+|...|.+++|+|++.. |++++.||.|++||+++.              
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~--------------  234 (372)
T 1k8k_C          171 AYIKEVEERPAPTPWGSKMPFGEL-MFESSSSCGWVHGVCFSANGSR-VAWVSHDSTVCLADADKK--------------  234 (372)
T ss_dssp             CCCTTTSCCCCCBTTBSCCCTTCE-EEECCCCSSCEEEEEECSSSSE-EEEEETTTEEEEEEGGGT--------------
T ss_pred             cccccccccccccccccccchhhh-eEecCCCCCeEEEEEECCCCCE-EEEEeCCCEEEEEECCCC--------------
Confidence            64                  3443 7778889999999999999985 899999999999999873              


Q ss_pred             ccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         820 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       820 ~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ..+..+..|...|.+++|+|++. ++++| .|+.|++
T Consensus       235 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i  269 (372)
T 1k8k_C          235 MAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVL  269 (372)
T ss_dssp             TEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEE
T ss_pred             ceeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEE
Confidence            34566678889999999999998 46566 6776664

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.90  E-value=1.9e-22  Score=224.98  Aligned_cols=228  Identities=16%  Similarity=0.207  Sum_probs=175.1

Q ss_pred             EEEeeccchhhhhhhh---hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578         603 VMYLENKTRAQICQLL---DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       603 il~l~n~~~~~l~~l~---~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  679 (860)
                      .+.+|+..........   +|.+.|.+++|+|.++.++++|+.||.|++||+.+. ..........|...|.+++|+|++
T Consensus        97 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~  175 (383)
T 3ei3_B           97 DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSR  175 (383)
T ss_dssp             CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTT
T ss_pred             eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCC
Confidence            3555666554444333   578899999999977899999999999999999852 222222234455889999999999


Q ss_pred             CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578         680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR  759 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~  759 (860)
                      .. +++|+.||.               |++||++ +   ..+..+.+|...|.+++|+|++.+++++|+.||.|++||++
T Consensus       176 ~~-l~~~~~d~~---------------i~i~d~~-~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  235 (383)
T 3ei3_B          176 QM-LATGDSTGR---------------LLLLGLD-G---HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR  235 (383)
T ss_dssp             TE-EEEEETTSE---------------EEEEETT-S---CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGG
T ss_pred             CE-EEEECCCCC---------------EEEEECC-C---CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCC
Confidence            85 899999998               9999994 2   57778889999999999999999679999999999999999


Q ss_pred             C----CceeeEEeccCCCceEEEEEcC-CCCCEEEEEECCCcEEEEECCCCCcccccccc--------------------
Q psy4578         760 N----LKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDA--------------------  814 (860)
Q Consensus       760 ~----~~~~~~~~~~h~~~V~~l~fsp-~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~--------------------  814 (860)
                      +    ... +..+ +|...|++++|+| +|.. |++++.||.|++||+++..........                    
T Consensus       236 ~~~~~~~~-~~~~-~~~~~v~~~~~s~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  312 (383)
T 3ei3_B          236 NIKDKNSY-IAEM-PHEKPVNAAYFNPTDSTK-LLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYD  312 (383)
T ss_dssp             GCCSTTCE-EEEE-ECSSCEEEEEECTTTSCE-EEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSS
T ss_pred             CCCcccce-EEEe-cCCCceEEEEEcCCCCCE-EEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCC
Confidence            7    333 4444 6999999999999 8875 889999999999999886654332210                    


Q ss_pred             ---------------cC--------CCCccEEEecC--ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         815 ---------------ED--------GPPELLFIHGG--HTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       815 ---------------~~--------~~~~~i~~~~~--h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                                     .+        .....+..+.+  |.+.+..++|+|+|++ +++|+ |+.|+|
T Consensus       313 ~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~-l~s~s-d~~i~i  377 (383)
T 3ei3_B          313 LIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDV-LASGM-GFNILI  377 (383)
T ss_dssp             EEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSE-EEEEE-TTEEEE
T ss_pred             ceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccE-EEEec-CCcEEE
Confidence                           00        12234445554  5567778899999995 66776 788875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.90  E-value=5.1e-22  Score=215.56  Aligned_cols=214  Identities=17%  Similarity=0.289  Sum_probs=176.7

Q ss_pred             EEEEeeccchhhhhhhh------hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEE
Q psy4578         602 EVMYLENKTRAQICQLL------DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  675 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~------~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~  675 (860)
                      ..+.+|+..........      .+...|.+++|+| ++.++++|+.||.|++||+.++.. .....+..|...|.+++|
T Consensus        72 g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~i~~~~~  149 (337)
T 1gxr_A           72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAI  149 (337)
T ss_dssp             SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEE
T ss_pred             CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCc-ceeeecccCCCceEEEEE
Confidence            34556665444322221      5678899999998 788999999999999999987532 245567789999999999


Q ss_pred             ccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEE
Q psy4578         676 NPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL  755 (860)
Q Consensus       676 sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~I  755 (860)
                      +|+++. +++|+.||.               |++||++++   ..+..+.+|...|.+++|+|++.. +++|+.||.|++
T Consensus       150 ~~~~~~-l~~~~~dg~---------------v~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~  209 (337)
T 1gxr_A          150 SPDSKV-CFSCCSDGN---------------IAVWDLHNQ---TLVRQFQGHTDGASCIDISNDGTK-LWTGGLDNTVRS  209 (337)
T ss_dssp             CTTSSE-EEEEETTSC---------------EEEEETTTT---EEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEE
T ss_pred             CCCCCE-EEEEeCCCc---------------EEEEeCCCC---ceeeeeecccCceEEEEECCCCCE-EEEEecCCcEEE
Confidence            999985 889999998               999999886   667788889999999999999984 899999999999


Q ss_pred             EeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEE
Q psy4578         756 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF  835 (860)
Q Consensus       756 WDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i  835 (860)
                      ||++++.. ...+ .+...+.+++|+|+++. +++++.||.|++||+.+..               ......|...|.++
T Consensus       210 ~d~~~~~~-~~~~-~~~~~v~~~~~s~~~~~-l~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~v~~~  271 (337)
T 1gxr_A          210 WDLREGRQ-LQQH-DFTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPD---------------KYQLHLHESCVLSL  271 (337)
T ss_dssp             EETTTTEE-EEEE-ECSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSSC---------------EEEECCCSSCEEEE
T ss_pred             EECCCCce-Eeee-cCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCC---------------eEEEcCCccceeEE
Confidence            99999876 4444 47889999999999985 8899999999999998732               23456789999999


Q ss_pred             EEccCCCeEEEEEeCCCeEee
Q psy4578         836 SWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       836 ~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|+|++++ +++++.||.|++
T Consensus       272 ~~~~~~~~-l~~~~~dg~i~~  291 (337)
T 1gxr_A          272 KFAYCGKW-FVSTGKDNLLNA  291 (337)
T ss_dssp             EECTTSSE-EEEEETTSEEEE
T ss_pred             EECCCCCE-EEEecCCCcEEE
Confidence            99999995 778999998886

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.1e-22  Score=224.63  Aligned_cols=209  Identities=19%  Similarity=0.333  Sum_probs=174.9

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCCcee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTQF  693 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg~i~  693 (860)
                      .+.+|.+.|++++|+| ++.+|++|+.||.|++||+..+. ......+.+|...|++++|+++  +. ++++|+.||.  
T Consensus         6 ~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~--   80 (379)
T 3jrp_A            6 IANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGK--   80 (379)
T ss_dssp             CEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSC--
T ss_pred             EecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC-EEEEeccCCE--
Confidence            3456788999999998 78899999999999999997432 3556778899999999999977  66 5999999998  


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC--CCcEEEEeeCCCcEEEEeCCCCce-eeEEecc
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTVALWDLRNLKL-KLHSFES  770 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~--g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~  770 (860)
                                   |++||+.++.. ..+..+.+|...|.+++|+|+  +. ++++|+.||.|++||++.... ....+.+
T Consensus        81 -------------v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  145 (379)
T 3jrp_A           81 -------------VLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDA  145 (379)
T ss_dssp             -------------EEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEEC
T ss_pred             -------------EEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecC
Confidence                         99999987621 256677889999999999999  77 599999999999999998743 2456678


Q ss_pred             CCCceEEEEEcC-------------CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578         771 HKDEIFQVQWSP-------------HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  837 (860)
Q Consensus       771 h~~~V~~l~fsp-------------~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~  837 (860)
                      |...|.+++|+|             ++. ++++|+.||.|++||+++....          ..+.....+|...|++++|
T Consensus       146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~h~~~v~~~~~  214 (379)
T 3jrp_A          146 HAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQT----------YVLESTLEGHSDWVRDVAW  214 (379)
T ss_dssp             CTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTE----------EEEEEEECCCSSCEEEEEE
T ss_pred             CCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcc----------eeeEEEEecccCcEeEEEE
Confidence            999999999999             576 5899999999999999874321          2345677789999999999


Q ss_pred             ccC---CCeEEEEEeCCCeEee
Q psy4578         838 NPN---EPWVICSVSEDNIMQK  856 (860)
Q Consensus       838 spd---g~~Llasgs~Dg~IrI  856 (860)
                      +|+   +. ++++++.||.|++
T Consensus       215 sp~~~~~~-~l~s~~~dg~i~i  235 (379)
T 3jrp_A          215 SPTVLLRS-YLASVSQDRTCII  235 (379)
T ss_dssp             CCCCSSSE-EEEEEETTSCEEE
T ss_pred             CCCCCCCC-eEEEEeCCCEEEE
Confidence            999   56 6889999999886

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.90  E-value=1.3e-22  Score=228.20  Aligned_cols=204  Identities=21%  Similarity=0.352  Sum_probs=164.1

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC------------------CCCeeEEEEccC
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH------------------TAEVNCLSFNPY  678 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h------------------~~~V~~l~~sp~  678 (860)
                      .++|.+.|++++|+| ++.+|++|+ ++.+++|++.++..   +..+..|                  ...|++++|+|+
T Consensus        60 ~~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d  134 (393)
T 1erj_A           60 SLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSL---VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD  134 (393)
T ss_dssp             EEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCE---EEEECC-----------------CCCCBEEEEEECTT
T ss_pred             ecCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCE---EEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence            446888999999999 788899876 68999999987533   3333333                  234999999999


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL  758 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl  758 (860)
                      |++ +++|+.||+               |++||+.++   +.+..+.+|...|.+++|+|++.+ +++|+.||+|++||+
T Consensus       135 g~~-l~s~~~d~~---------------i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~  194 (393)
T 1erj_A          135 GKF-LATGAEDRL---------------IRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDL  194 (393)
T ss_dssp             SSE-EEEEETTSC---------------EEEEETTTT---EEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEET
T ss_pred             CCE-EEEEcCCCe---------------EEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEEC
Confidence            985 899999999               999999876   567788999999999999999995 899999999999999


Q ss_pred             CCCceeeEEeccCCCceEEEEEcC-CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578         759 RNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  837 (860)
Q Consensus       759 ~~~~~~~~~~~~h~~~V~~l~fsp-~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~  837 (860)
                      +++.. ...+. +...+.+++|+| +|. ++++|+.||.|++||++++........       ......+|...|++++|
T Consensus       195 ~~~~~-~~~~~-~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~-------~~~~~~~h~~~v~~v~~  264 (393)
T 1erj_A          195 RTGQC-SLTLS-IEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDS-------ENESGTGHKDSVYSVVF  264 (393)
T ss_dssp             TTTEE-EEEEE-CSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC-------------CCCSSCEEEEEE
T ss_pred             CCCee-EEEEE-cCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcEEEeecc-------cccCCCCCCCCEEEEEE
Confidence            99876 44444 567899999999 676 589999999999999987543322110       01122579999999999


Q ss_pred             ccCCCeEEEEEeCCCeEee
Q psy4578         838 NPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       838 spdg~~Llasgs~Dg~IrI  856 (860)
                      +|+|++ +++|+.|+.|++
T Consensus       265 ~~~g~~-l~s~s~d~~v~~  282 (393)
T 1erj_A          265 TRDGQS-VVSGSLDRSVKL  282 (393)
T ss_dssp             CTTSSE-EEEEETTSEEEE
T ss_pred             CCCCCE-EEEEeCCCEEEE
Confidence            999995 779999999986

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.90  E-value=4.1e-22  Score=217.52  Aligned_cols=225  Identities=12%  Similarity=0.121  Sum_probs=184.7

Q ss_pred             EEEEeeccchhh----hhhhhhcccceeeeEeeccCCc-EEEEEeCCCcEEEEEc-CCCCcccCeeeccC--CCCCeeEE
Q psy4578         602 EVMYLENKTRAQ----ICQLLDKLRLLIDVAWHLLHES-LFGSVADDQKLMIWDT-RSHNVSKPSHTVDA--HTAEVNCL  673 (860)
Q Consensus       602 ~il~l~n~~~~~----l~~l~~~~~~V~~v~~sp~~~~-~lasgs~DG~I~IWd~-~~~~~~~~~~~~~~--h~~~V~~l  673 (860)
                      ..+.+|+.....    ......|...|.+++|+| ++. ++++|+.||.|++||+ .++.    ...+.+  |...|.++
T Consensus        33 ~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~~~v~~l  107 (342)
T 1yfq_A           33 GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPS----FQALTNNEANLGICRI  107 (342)
T ss_dssp             SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSS----EEECBSCCCCSCEEEE
T ss_pred             CeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCc----eEeccccCCCCceEEE
Confidence            445666665555    566667888999999998 688 9999999999999999 7642    366777  99999999


Q ss_pred             EEccCCCeEEEEEeCCCceeeecccc---------c------------------------ccCCCcEEEEeCCC-CCCCC
Q psy4578         674 SFNPYSEYILATGSADKTQFEVEEEE---------E------------------------ENYDQKLMIWDTRS-HNVSK  719 (860)
Q Consensus       674 ~~sp~g~~llasgs~Dg~i~~~~~~~---------~------------------------~~~dg~I~iwDl~~-~~~~~  719 (860)
                      +|+| +. .+++|+.||.+.+|+...         .                        +..++.|++||+++ ... .
T Consensus       108 ~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~  184 (342)
T 1yfq_A          108 CKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD-N  184 (342)
T ss_dssp             EEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC-C
T ss_pred             EeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccc-c
Confidence            9999 77 589999999999998765         2                        23578999999987 432 2


Q ss_pred             CeeeecCCCCCeEEEEEcC-CCCcEEEEeeCCCcEEEEeCCCC-----ceeeEEeccCCC---------ceEEEEEcCCC
Q psy4578         720 PSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTVALWDLRNL-----KLKLHSFESHKD---------EIFQVQWSPHN  784 (860)
Q Consensus       720 ~~~~~~~h~~~I~sl~~sp-~g~~llasgs~Dg~I~IWDl~~~-----~~~~~~~~~h~~---------~V~~l~fsp~g  784 (860)
                      .......|...|.+++|+| ++. .+++|+.||.|++||++..     ......+..|..         .|.+++|+|++
T Consensus       185 ~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  263 (342)
T 1yfq_A          185 GTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH  263 (342)
T ss_dssp             CEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred             ceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC
Confidence            3345567889999999999 998 4999999999999999887     233677777765         99999999999


Q ss_pred             CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCc-cCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         785 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       785 ~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h-~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                      ++ |++|+.||.|++||+.++              ..+..+.+| .+.|++++  |+|.+ +++++.||.
T Consensus       264 ~~-l~~~~~dg~i~vwd~~~~--------------~~~~~~~~~h~~~v~~~~--~~~~~-l~s~s~Dg~  315 (342)
T 1yfq_A          264 KF-LYTAGSDGIISCWNLQTR--------------KKIKNFAKFNEDSVVKIA--CSDNI-LCLATSDDT  315 (342)
T ss_dssp             CC-EEEEETTSCEEEEETTTT--------------EEEEECCCCSSSEEEEEE--ECSSE-EEEEEECTH
T ss_pred             CE-EEEecCCceEEEEcCccH--------------hHhhhhhcccCCCceEec--CCCCe-EEEEecCCc
Confidence            86 889999999999999873              445667787 99999999  99994 778888887

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.90  E-value=4e-23  Score=227.04  Aligned_cols=222  Identities=18%  Similarity=0.338  Sum_probs=176.0

Q ss_pred             eEEEEeeccchhhhhh-hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec---cCCCCCeeEEEEc
Q psy4578         601 EEVMYLENKTRAQICQ-LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV---DAHTAEVNCLSFN  676 (860)
Q Consensus       601 ~~il~l~n~~~~~l~~-l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~---~~h~~~V~~l~~s  676 (860)
                      ...+.+|+....+... +..|...|.+++|+|.++.++++|+.||.|++||+.+++   ....+   .+|...|.+++|+
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~  170 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT---LVAIFGGVEGHRDEVLSADYD  170 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE---EEEEECSTTSCSSCEEEEEEC
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe---EEEEecccccccCceeEEEEC
Confidence            3356667765555444 445788999999998778999999999999999998853   34444   6899999999999


Q ss_pred             cCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCC-------------------------CCeeeecCCCCCe
Q psy4578         677 PYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVS-------------------------KPSHTVDAHTAEV  731 (860)
Q Consensus       677 p~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~-------------------------~~~~~~~~h~~~I  731 (860)
                      |++.. +++|+.||.               |++||++++...                         .......+|...|
T Consensus       171 ~~~~~-l~~~~~dg~---------------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  234 (366)
T 3k26_A          171 LLGEK-IMSCGMDHS---------------LKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV  234 (366)
T ss_dssp             TTSSE-EEEEETTSC---------------EEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred             CCCCE-EEEecCCCC---------------EEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence            99985 899999998               888888764210                         1122334499999


Q ss_pred             EEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-------------eeEEeccCCCceEEEEEcCC--CCCEEEEEECCCc
Q psy4578         732 NCLSFNPYSEYILATGSADKTVALWDLRNLKL-------------KLHSFESHKDEIFQVQWSPH--NETILASSGTDRR  796 (860)
Q Consensus       732 ~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-------------~~~~~~~h~~~V~~l~fsp~--g~~lL~tgs~Dg~  796 (860)
                      .+++|+  +. ++++|+.||.|++||+++...             .+..+..|...|++++|+|+  ++ +|++|+.||.
T Consensus       235 ~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg~  310 (366)
T 3k26_A          235 DCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVGK  310 (366)
T ss_dssp             CEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTSC
T ss_pred             EEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCCc
Confidence            999999  55 599999999999999987642             26677889999999999999  87 4899999999


Q ss_pred             EEEEECCCCCcccccccccCCCCccEEEecCc--cCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         797 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       797 I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h--~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |++||+.+.....          .....+.+|  ...|++++|+|++++ +++++.||.|++
T Consensus       311 i~vwd~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~i  361 (366)
T 3k26_A          311 LYVWDLEVEDPHK----------AKCTTLTHHKCGAAIRQTSFSRDSSI-LIAVCDDASIWR  361 (366)
T ss_dssp             EEEEECCSSSGGG----------CEEEEECCTTCCSCEEEEEECTTSSE-EEEEETTSEEEE
T ss_pred             EEEEECCCCCCcc----------ccceEEcccccCCceEEEEeCCCCCe-EEEEeCCCEEEE
Confidence            9999999854321          233455566  799999999999994 779999999986

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.90  E-value=8e-23  Score=227.93  Aligned_cols=195  Identities=14%  Similarity=0.126  Sum_probs=155.4

Q ss_pred             cceeeeEeeccCCcEEE--EEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         622 RLLIDVAWHLLHESLFG--SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~la--sgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      ..+.+++|+| ++++++  +++.|++|+|||+.++   ..+..+ .|.+.|.+++|+|+|++ +++++.++         
T Consensus       134 ~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~---~~~~~~-~~~~~V~~v~fspdg~~-l~s~s~~~---------  198 (365)
T 4h5i_A          134 DYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDL---TEKFEI-ETRGEVKDLHFSTDGKV-VAYITGSS---------  198 (365)
T ss_dssp             CCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTT---EEEEEE-ECSSCCCEEEECTTSSE-EEEECSSC---------
T ss_pred             cCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCC---cEEEEe-CCCCceEEEEEccCCce-EEecccee---------
Confidence            4588999999 666655  4457899999999984   344444 47788999999999995 78887665         


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC----cEEEEeCCCCcee---eEEeccCC
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK----TVALWDLRNLKLK---LHSFESHK  772 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg----~I~IWDl~~~~~~---~~~~~~h~  772 (860)
                             +.+|+..++.. .......+|...|.+++|+|++.. +++++.|+    .+++||+......   ...+.+|.
T Consensus       199 -------~~~~~~~~~~~-~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  269 (365)
T 4h5i_A          199 -------LEVISTVTGSC-IARKTDFDKNWSLSKINFIADDTV-LIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRF  269 (365)
T ss_dssp             -------EEEEETTTCCE-EEEECCCCTTEEEEEEEEEETTEE-EEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred             -------EEEEEeccCcc-eeeeecCCCCCCEEEEEEcCCCCE-EEEEecCCcceeEEeecccccceecceeeeeecCCC
Confidence                   67777766522 122344578889999999999995 88888777    5888998776542   34567899


Q ss_pred             CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEE-ecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578         773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~-~~~h~~~I~~i~~spdg~~Llasgs~D  851 (860)
                      ..|++++|+|+|++ |++|+.||+|++||+.++              .++.. ..+|.+.|++++|+|||+ +|++||.|
T Consensus       270 ~~V~~~~~Spdg~~-lasgs~D~~V~iwd~~~~--------------~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D  333 (365)
T 4h5i_A          270 KGITSMDVDMKGEL-AVLASNDNSIALVKLKDL--------------SMSKIFKQAHSFAITEVTISPDST-YVASVSAA  333 (365)
T ss_dssp             SCEEEEEECTTSCE-EEEEETTSCEEEEETTTT--------------EEEEEETTSSSSCEEEEEECTTSC-EEEEEETT
T ss_pred             CCeEeEEECCCCCc-eEEEcCCCEEEEEECCCC--------------cEEEEecCcccCCEEEEEECCCCC-EEEEEeCC
Confidence            99999999999985 999999999999999873              34444 468999999999999999 58899999


Q ss_pred             CeEee
Q psy4578         852 NIMQK  856 (860)
Q Consensus       852 g~IrI  856 (860)
                      ++|||
T Consensus       334 ~tvrv  338 (365)
T 4h5i_A          334 NTIHI  338 (365)
T ss_dssp             SEEEE
T ss_pred             CeEEE
Confidence            99997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.90  E-value=7.4e-23  Score=230.60  Aligned_cols=215  Identities=13%  Similarity=0.182  Sum_probs=170.5

Q ss_pred             EEEeeccchhhhhhhh-hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQICQLL-DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~l~~l~-~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .+.+|+.........+ .|.+.|.+++|+| ++.+|++|+.||.|++||+.++   ..+..+.+|...|++++|+|++..
T Consensus       120 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~  195 (420)
T 3vl1_A          120 DIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDG---SNPRTLIGHRATVTDIAIIDRGRN  195 (420)
T ss_dssp             CEEEECTTSCEEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC---CCCEEEECCSSCEEEEEEETTTTE
T ss_pred             CEEEEeCCCcceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCC---cCceEEcCCCCcEEEEEEcCCCCE
Confidence            4566666666655554 7788999999998 7889999999999999999884   456677899999999999999985


Q ss_pred             EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC---CC---------------------CCeEEEEEc
Q psy4578         682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA---HT---------------------AEVNCLSFN  737 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~---h~---------------------~~I~sl~~s  737 (860)
                       +++|+.||+               |++||++++   ..+..+..   |.                     ..+.+++|+
T Consensus       196 -l~s~~~d~~---------------v~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s  256 (420)
T 3vl1_A          196 -VLSASLDGT---------------IRLWECGTG---TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG  256 (420)
T ss_dssp             -EEEEETTSC---------------EEEEETTTT---EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred             -EEEEcCCCc---------------EEEeECCCC---ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence             889999999               999998876   34444432   33                     445555567


Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCC
Q psy4578         738 PYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG  817 (860)
Q Consensus       738 p~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~  817 (860)
                      |++.+ +++|+.||.|++||++++.........|...|++++|+|+++.++++|+.||.|++||+++...          
T Consensus       257 ~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~----------  325 (420)
T 3vl1_A          257 TYGKY-VIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC----------  325 (420)
T ss_dssp             CTTEE-EEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------
T ss_pred             CCCCE-EEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC----------
Confidence            88884 8999999999999999988744445568899999999999985699999999999999987432          


Q ss_pred             CCccEEEecC-ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         818 PPELLFIHGG-HTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       818 ~~~~i~~~~~-h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                         ++....+ |...|.++.| +++. ++++++.|+.|++
T Consensus       326 ---~~~~~~~~~~~~v~~~~~-~~~~-~l~s~~~d~~v~i  360 (420)
T 3vl1_A          326 ---PVGEFLINEGTPINNVYF-AAGA-LFVSSGFDTSIKL  360 (420)
T ss_dssp             ---CSEEEEESTTSCEEEEEE-ETTE-EEEEETTTEEEEE
T ss_pred             ---chhhhhccCCCCceEEEe-CCCC-EEEEecCCccEEE
Confidence               1233333 6677888855 5666 6889999999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.90  E-value=1.8e-22  Score=225.09  Aligned_cols=204  Identities=17%  Similarity=0.281  Sum_probs=165.8

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      .+|.+.|++++|+|++..++++|+.||.|++||+.++.. .......+|...|.+++|+|++...+++|+.||.      
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~------  142 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK-TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA------  142 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC-EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE------
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc-ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE------
Confidence            456789999999995448999999999999999987533 1222234799999999999954446999999998      


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCeeee---cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSHTV---DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE  774 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~---~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~  774 (860)
                               |++||+.+.    .+..+   .+|...|.+++|+|++. .+++|+.||.|++||++ +.. +..+.+|...
T Consensus       143 ---------i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~-~~~~~~h~~~  206 (383)
T 3ei3_B          143 ---------TTLRDFSGS----VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHE-IFKEKLHKAK  206 (383)
T ss_dssp             ---------EEEEETTSC----EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCE-EEEEECSSSC
T ss_pred             ---------EEEEECCCC----ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCE-EEEeccCCCc
Confidence                     999999852    33334   34458899999999999 49999999999999995 333 7788899999


Q ss_pred             eEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc-CCCeEEEEEeCCCe
Q psy4578         775 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWVICSVSEDNI  853 (860)
Q Consensus       775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp-dg~~Llasgs~Dg~  853 (860)
                      |.+++|+|++++++++|+.||.|++||+++....          ..++... +|...|++++|+| +|.+ +++++.|+.
T Consensus       207 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----------~~~~~~~-~~~~~v~~~~~s~~~~~~-l~~~~~d~~  274 (383)
T 3ei3_B          207 VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK----------NSYIAEM-PHEKPVNAAYFNPTDSTK-LLTTDQRNE  274 (383)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST----------TCEEEEE-ECSSCEEEEEECTTTSCE-EEEEESSSE
T ss_pred             EEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc----------cceEEEe-cCCCceEEEEEcCCCCCE-EEEEcCCCc
Confidence            9999999999867999999999999999874321          2233333 6899999999999 9985 778899999


Q ss_pred             Eee
Q psy4578         854 MQK  856 (860)
Q Consensus       854 IrI  856 (860)
                      |++
T Consensus       275 i~i  277 (383)
T 3ei3_B          275 IRV  277 (383)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.90  E-value=3.3e-22  Score=238.51  Aligned_cols=214  Identities=21%  Similarity=0.319  Sum_probs=174.4

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      .+++|+. ......+.+|.+.|.+++|+|++...|++|+.|++|++||..+   .+....+.+|...|++++|+|+|+ +
T Consensus       130 ~v~~wd~-~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~---~~~~~~l~~H~~~V~~v~fspdg~-~  204 (611)
T 1nr0_A          130 HVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSVRYNPDGS-L  204 (611)
T ss_dssp             EEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---BEEEEEECCCSSCEEEEEECTTSS-E
T ss_pred             EEEEeeC-CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC---CeEeeeeccccCceEEEEECCCCC-E
Confidence            4566663 3334456678889999999995556799999999999999876   355678889999999999999998 5


Q ss_pred             EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeec-------CCCCCeEEEEEcCCCCcEEEEeeCCCcEEE
Q psy4578         683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD-------AHTAEVNCLSFNPYSEYILATGSADKTVAL  755 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~-------~h~~~I~sl~~sp~g~~llasgs~Dg~I~I  755 (860)
                      +++|+.|++               |++||+.++   .....+.       +|.+.|.+++|+|+|.+ |++|+.|++|++
T Consensus       205 las~s~D~~---------------i~lwd~~~g---~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-l~s~s~D~~v~l  265 (611)
T 1nr0_A          205 FASTGGDGT---------------IVLYNGVDG---TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKI  265 (611)
T ss_dssp             EEEEETTSC---------------EEEEETTTC---CEEEECBCTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEE
T ss_pred             EEEEECCCc---------------EEEEECCCC---cEeeeeccccccccccCCCEEEEEECCCCCE-EEEEeCCCeEEE
Confidence            999999999               999999876   3444442       79999999999999995 999999999999


Q ss_pred             EeCCCCcee------------------------------------------eEEeccCCCceEEEEEcCCCCCEEEEEEC
Q psy4578         756 WDLRNLKLK------------------------------------------LHSFESHKDEIFQVQWSPHNETILASSGT  793 (860)
Q Consensus       756 WDl~~~~~~------------------------------------------~~~~~~h~~~V~~l~fsp~g~~lL~tgs~  793 (860)
                      ||++++...                                          ...+.+|...|++++|+|+|++ |++|+.
T Consensus       266 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-l~s~s~  344 (611)
T 1nr0_A          266 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-LFSADA  344 (611)
T ss_dssp             EETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEET
T ss_pred             EeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-EEEEeC
Confidence            999876531                                          1234579999999999999985 899999


Q ss_pred             CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         794 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       794 Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ||+|++||+.++.....             ...+|...|.+++|++++.  +++++.|+.+++
T Consensus       345 D~~v~~Wd~~~~~~~~~-------------~~~~h~~~v~~~~~s~~~~--l~s~s~d~~v~~  392 (611)
T 1nr0_A          345 EGHINSWDISTGISNRV-------------FPDVHATMITGIKTTSKGD--LFTVSWDDHLKV  392 (611)
T ss_dssp             TSCEEEEETTTCCEEEC-------------SSCSCSSCEEEEEECTTSC--EEEEETTTEEEE
T ss_pred             CCcEEEEECCCCceeee-------------cccCCcceEEEEEECCCCc--EEEEEcCCceEE
Confidence            99999999987443211             1146889999999998875  568889998875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.90  E-value=8.9e-22  Score=211.50  Aligned_cols=225  Identities=20%  Similarity=0.259  Sum_probs=184.0

Q ss_pred             EEEEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         602 EVMYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       602 ~il~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      ..+.+|+...... .....|.+.|.+++|+| ++.++++|+.||.|++|++...........+.+|...|.++.|+  ++
T Consensus        39 g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~  115 (313)
T 3odt_A           39 GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DG  115 (313)
T ss_dssp             SEEEEEEESSSEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TT
T ss_pred             CcEEEEECCCCEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--CC
Confidence            3455565554443 33445678899999998 78999999999999999998766566777888999999999993  55


Q ss_pred             eEEEEEeCCCceeeeccccc--------------------------ccCCCcEEEEeCCCCCCCCCeeeecC-CCCCeEE
Q psy4578         681 YILATGSADKTQFEVEEEEE--------------------------ENYDQKLMIWDTRSHNVSKPSHTVDA-HTAEVNC  733 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~--------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~-h~~~I~s  733 (860)
                       .+++|+.||.+.+|+....                          +..+|.|++||..     .....+.. |...|.+
T Consensus       116 -~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~~~~~i~~  189 (313)
T 3odt_A          116 -VVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-----KVIKTFSGIHNDVVRH  189 (313)
T ss_dssp             -EEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-----EEEEEECSSCSSCEEE
T ss_pred             -EEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-----ceEEEEeccCcccEEE
Confidence             5899999999999973321                          2457899999943     34555666 8999999


Q ss_pred             EEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccc
Q psy4578         734 LSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED  813 (860)
Q Consensus       734 l~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~  813 (860)
                      ++|+|++.  +++|+.||.|++||++++.. +..+.+|...|++++|+|++ . +++++.||.|++||+.+.        
T Consensus       190 ~~~~~~~~--~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~--------  256 (313)
T 3odt_A          190 LAVVDDGH--FISCSNDGLIKLVDMHTGDV-LRTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENG--------  256 (313)
T ss_dssp             EEEEETTE--EEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTTC--------
T ss_pred             EEEcCCCe--EEEccCCCeEEEEECCchhh-hhhhhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCCC--------
Confidence            99999987  78999999999999999886 78888999999999999999 4 789999999999999873        


Q ss_pred             ccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         814 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       814 ~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                            ........|...|++++|+|++. ++ +++.||.|++
T Consensus       257 ------~~~~~~~~~~~~i~~~~~~~~~~-~~-~~~~dg~i~i  291 (313)
T 3odt_A          257 ------SLKQVITLPAISIWSVDCMSNGD-II-VGSSDNLVRI  291 (313)
T ss_dssp             ------CEEEEEECSSSCEEEEEECTTSC-EE-EEETTSCEEE
T ss_pred             ------ceeEEEeccCceEEEEEEccCCC-EE-EEeCCCcEEE
Confidence                  34556677888999999999998 34 6888988876

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.90  E-value=2.3e-22  Score=224.51  Aligned_cols=216  Identities=16%  Similarity=0.223  Sum_probs=172.6

Q ss_pred             EEEeeccchhh------hhhhhhc-----ccceeeeEee----ccCCcE-EEEEeCCCcEEEEEcCC------CCccc--
Q psy4578         603 VMYLENKTRAQ------ICQLLDK-----LRLLIDVAWH----LLHESL-FGSVADDQKLMIWDTRS------HNVSK--  658 (860)
Q Consensus       603 il~l~n~~~~~------l~~l~~~-----~~~V~~v~~s----p~~~~~-lasgs~DG~I~IWd~~~------~~~~~--  658 (860)
                      .+.+|+.....      ...+..+     ...|.+++|+    | ++.+ |++|+.||.|++||+.+      +....  
T Consensus        92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  170 (397)
T 1sq9_A           92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS  170 (397)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred             CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeecc
Confidence            35555555554      3444445     4889999999    8 6777 99999999999999987      43221  


Q ss_pred             Ceeec-------cCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC---C-
Q psy4578         659 PSHTV-------DAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA---H-  727 (860)
Q Consensus       659 ~~~~~-------~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~---h-  727 (860)
                      +...+       ..|...|++++|+|++  ++++|+.||.               |++||++++   ..+..+..   | 
T Consensus       171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~---------------i~i~d~~~~---~~~~~~~~~~~h~  230 (397)
T 1sq9_A          171 PTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGT---------------VQISELSTL---RPLYNFESQHSMI  230 (397)
T ss_dssp             CEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSE---------------EEEEETTTT---EEEEEEECCC---
T ss_pred             CcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCc---------------EEEEECCCC---ceeEEEecccccc
Confidence            11144       4588999999999999  5899999998               999999886   56677777   8 


Q ss_pred             --CCCeEEEEEcCCCCcEEEEeeCC---CcEEEEeCCCCceeeEEecc-------------CCCceEEEEEcCCCCCEEE
Q psy4578         728 --TAEVNCLSFNPYSEYILATGSAD---KTVALWDLRNLKLKLHSFES-------------HKDEIFQVQWSPHNETILA  789 (860)
Q Consensus       728 --~~~I~sl~~sp~g~~llasgs~D---g~I~IWDl~~~~~~~~~~~~-------------h~~~V~~l~fsp~g~~lL~  789 (860)
                        ...|.+++|+|++.+ +++|+.|   |.|++||++++.. +..+.+             |...|.+++|+|++++ |+
T Consensus       231 ~~~~~i~~i~~~~~~~~-l~~~~~d~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~  307 (397)
T 1sq9_A          231 NNSNSIRSVKFSPQGSL-LAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LC  307 (397)
T ss_dssp             CCCCCEEEEEECSSTTE-EEEEEEETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSCEEEEEECSSSSE-EE
T ss_pred             ccCCccceEEECCCCCE-EEEEecCCCCceEEEEECCCCcc-cceeccCcccccccccccccCCcEEEEEECCCCCE-EE
Confidence              999999999999984 8899999   9999999999876 778888             9999999999999985 89


Q ss_pred             EEECCCcEEEEECCCCCcccccccccCCCCccEEEec------Cc---------------cCceEEEEEccCCC------
Q psy4578         790 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG------GH---------------TAKISDFSWNPNEP------  842 (860)
Q Consensus       790 tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~------~h---------------~~~I~~i~~spdg~------  842 (860)
                      +|+.||.|++||+.+....              ..+.      +|               ...|++++|+|+|+      
T Consensus       308 ~~~~dg~i~iwd~~~~~~~--------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~  373 (397)
T 1sq9_A          308 SAGWDGKLRFWDVKTKERI--------------TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGA  373 (397)
T ss_dssp             EEETTSEEEEEETTTTEEE--------------EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTC
T ss_pred             EEeCCCeEEEEEcCCCcee--------------EEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccc
Confidence            9999999999999885433              3333      44               89999999999983      


Q ss_pred             ---eEEEEEeCCCeEee
Q psy4578         843 ---WVICSVSEDNIMQK  856 (860)
Q Consensus       843 ---~Llasgs~Dg~IrI  856 (860)
                         .++++++.||.|++
T Consensus       374 ~~~~~l~s~~~dg~i~i  390 (397)
T 1sq9_A          374 DLNESLCCVCLDRSIRW  390 (397)
T ss_dssp             TTSCEEEEEETTTEEEE
T ss_pred             cccceEEEecCCCcEEE
Confidence               36889999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.90  E-value=8.7e-23  Score=224.32  Aligned_cols=227  Identities=14%  Similarity=0.256  Sum_probs=179.2

Q ss_pred             EEEeeccchhhhhhhhh------cccceeeeEeeccC---CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEE
Q psy4578         603 VMYLENKTRAQICQLLD------KLRLLIDVAWHLLH---ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCL  673 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~------~~~~V~~v~~sp~~---~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l  673 (860)
                      .+.+|+.........+.      +...|.+++|+|+.   +.++++|+.||.|++||+.++   +.+..+.+|...|+++
T Consensus        45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~i~~~  121 (366)
T 3k26_A           45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM---QCIKHYVGHGNAINEL  121 (366)
T ss_dssp             EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC---CEEEEEESCCSCEEEE
T ss_pred             EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc---eEeeeecCCCCcEEEE
Confidence            34555555444333332      34679999999842   569999999999999999874   5567778899999999


Q ss_pred             EEcc-CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee---cCCCCCeEEEEEcCCCCcEEEEeeC
Q psy4578         674 SFNP-YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV---DAHTAEVNCLSFNPYSEYILATGSA  749 (860)
Q Consensus       674 ~~sp-~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~---~~h~~~I~sl~~sp~g~~llasgs~  749 (860)
                      +|+| ++. ++++|+.||.               |++||++++   ..+..+   .+|...|.+++|+|++.+ +++|+.
T Consensus       122 ~~~~~~~~-~l~s~~~dg~---------------i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~  181 (366)
T 3k26_A          122 KFHPRDPN-LLLSVSKDHA---------------LRLWNIQTD---TLVAIFGGVEGHRDEVLSADYDLLGEK-IMSCGM  181 (366)
T ss_dssp             EECSSCTT-EEEEEETTSC---------------EEEEETTTT---EEEEEECSTTSCSSCEEEEEECTTSSE-EEEEET
T ss_pred             EECCCCCC-EEEEEeCCCe---------------EEEEEeecC---eEEEEecccccccCceeEEEECCCCCE-EEEecC
Confidence            9999 666 6999999998               999999886   445555   689999999999999985 899999


Q ss_pred             CCcEEEEeCCCCcee---------------------------eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEEC
Q psy4578         750 DKTVALWDLRNLKLK---------------------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL  802 (860)
Q Consensus       750 Dg~I~IWDl~~~~~~---------------------------~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl  802 (860)
                      ||.|++||++++...                           .....+|...|.+++|+  ++ ++++++.||.|++||+
T Consensus       182 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~  258 (366)
T 3k26_A          182 DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKP  258 (366)
T ss_dssp             TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEE
T ss_pred             CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeC
Confidence            999999999876531                           12233499999999999  55 5899999999999999


Q ss_pred             CCCCcccccccccCCCCccEEEecCccCceEEEEEccC--CCeEEEEEeCCCeEee
Q psy4578         803 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN--EPWVICSVSEDNIMQK  856 (860)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd--g~~Llasgs~Dg~IrI  856 (860)
                      .+.................+....+|...|++++|+|+  ++ ++++|+.||.|++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg~i~v  313 (366)
T 3k26_A          259 GKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVGKLYV  313 (366)
T ss_dssp             SSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTSCEEE
T ss_pred             CCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCCcEEE
Confidence            88665433332233334567778899999999999999  88 5779999999886

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.90  E-value=7.4e-22  Score=222.34  Aligned_cols=214  Identities=23%  Similarity=0.438  Sum_probs=177.9

Q ss_pred             EEEEeeccchhhhhhhhh--cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578         602 EVMYLENKTRAQICQLLD--KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~~--~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  679 (860)
                      ..+++|+...+.......  +.+.|.+++|+| ++.+|++|+.||.|++||+.++   ..+..+.+|...|.+++|+  +
T Consensus       113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~--~  186 (401)
T 4aez_A          113 RNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQ---TKLRTMAGHQARVGCLSWN--R  186 (401)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEEE--T
T ss_pred             CeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCC---eEEEEecCCCCceEEEEEC--C
Confidence            346777776666554443  567899999998 7889999999999999999884   5567788999999999995  4


Q ss_pred             CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578         680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR  759 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~  759 (860)
                      . .+++|+.||.               |++||++...  .....+.+|.+.|.+++|+|++. ++++|+.||.|++||++
T Consensus       187 ~-~l~~~~~dg~---------------i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~  247 (401)
T 4aez_A          187 H-VLSSGSRSGA---------------IHHHDVRIAN--HQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDAR  247 (401)
T ss_dssp             T-EEEEEETTSE---------------EEEEETTSSS--CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT
T ss_pred             C-EEEEEcCCCC---------------EEEEecccCc--ceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCC
Confidence            4 6999999998               9999998542  56778889999999999999998 49999999999999999


Q ss_pred             CCceeeEEeccCCCceEEEEEcCCCCCEEEEEE--CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578         760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  837 (860)
Q Consensus       760 ~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs--~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~  837 (860)
                      +... ...+..|...|.+++|+|++..++++|+  .||.|++||+.++..              +... .+...|.+++|
T Consensus       248 ~~~~-~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--------------~~~~-~~~~~v~~~~~  311 (401)
T 4aez_A          248 SSIP-KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR--------------VNTV-DAGSQVTSLIW  311 (401)
T ss_dssp             CSSE-EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--------------EEEE-ECSSCEEEEEE
T ss_pred             CCCc-cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--------------EEEE-eCCCcEEEEEE
Confidence            9876 7788889999999999999988888876  799999999987433              2233 35678999999


Q ss_pred             ccCCCeEEEE-EeCCCeEee
Q psy4578         838 NPNEPWVICS-VSEDNIMQK  856 (860)
Q Consensus       838 spdg~~Llas-gs~Dg~IrI  856 (860)
                      +|++++++++ |+.||.|++
T Consensus       312 s~~~~~l~~~~g~~dg~i~v  331 (401)
T 4aez_A          312 SPHSKEIMSTHGFPDNNLSI  331 (401)
T ss_dssp             CSSSSEEEEEECTTTCEEEE
T ss_pred             CCCCCeEEEEeecCCCcEEE
Confidence            9999976654 448898876

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.5e-22  Score=223.06  Aligned_cols=239  Identities=18%  Similarity=0.192  Sum_probs=170.8

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCC--------------
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAE--------------  669 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~--------------  669 (860)
                      +.+|+.....+..+..|...|.+++|+| ++.++++++.||.|++||+.++.   ....+..+...              
T Consensus       132 i~i~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  207 (425)
T 1r5m_A          132 LRLWNKTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGT---VMQHFELKETGGSSINAENHSGDGS  207 (425)
T ss_dssp             EEEEETTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTE---EEEEECCC---------------CC
T ss_pred             EEEEeCCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCc---EEEEeeccccCccceeeccccCCcc
Confidence            4455555555555666788999999998 78899999999999999997642   22233333322              


Q ss_pred             -eeEEEEccCCCeEEEEEeCCCceeeeccccc---------------------------ccCCCcEEEEeCCCCCCCCCe
Q psy4578         670 -VNCLSFNPYSEYILATGSADKTQFEVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPS  721 (860)
Q Consensus       670 -V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~  721 (860)
                       +.+++|+|++.  +++++.+|.+.+|+....                           +..++.|++||++++   ..+
T Consensus       208 ~~~~~~~~~~~~--~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~  282 (425)
T 1r5m_A          208 LGVDVEWVDDDK--FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG---NSQ  282 (425)
T ss_dssp             CBSCCEEEETTE--EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB---SCS
T ss_pred             eeeEEEEcCCCE--EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC---ccc
Confidence             44444444322  344444444444433221                           112444999999886   566


Q ss_pred             eeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         722 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       722 ~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      ..+.+|...|.+++|+|++  .+++|+.||.|++||++++.. +..+..|...|.+++|+|+++. |++|+.||.|++||
T Consensus       283 ~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~i~~  358 (425)
T 1r5m_A          283 NCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTL-LALSIVDGVPIFAGRISQDGQK-YAVAFMDGQVNVYD  358 (425)
T ss_dssp             EEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEE-EEEEECTTCCEEEEEECTTSSE-EEEEETTSCEEEEE
T ss_pred             eEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcE-eEecccCCccEEEEEEcCCCCE-EEEEECCCeEEEEE
Confidence            7778899999999999998  589999999999999999886 7788889999999999999985 89999999999999


Q ss_pred             CCCCCcccccc-ccc-----CCCCccEEEecCccC--ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         802 LSKIGEEQSTE-DAE-----DGPPELLFIHGGHTA--KISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       802 l~~~~~~~~~~-~~~-----~~~~~~i~~~~~h~~--~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +.+........ ...     .....++..+.+|..  .|++++|+|++++ +++++.||.|++
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i  420 (425)
T 1r5m_A          359 LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK-ISVAYSLQEGSV  420 (425)
T ss_dssp             CHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSE-EEEEESSSCCEE
T ss_pred             CCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCce-EEEEecCceEEE
Confidence            98744111000 000     001226777888876  9999999999995 678889998875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.89  E-value=3.1e-22  Score=219.76  Aligned_cols=200  Identities=21%  Similarity=0.292  Sum_probs=160.9

Q ss_pred             hhhhhcccceeeeEeeccC--CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578         615 CQLLDKLRLLIDVAWHLLH--ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ  692 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~--~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i  692 (860)
                      ..+..|.+.|++++|+|++  +.+|++|+.||.|++||+.+.. ......+.+|...|++++|+|++++ +++|+.||. 
T Consensus        33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~dg~-  109 (368)
T 3mmy_A           33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-QTIPKAQQMHTGPVLDVCWSDDGSK-VFTASCDKT-  109 (368)
T ss_dssp             ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-CEEEEEEEECSSCEEEEEECTTSSE-EEEEETTSE-
T ss_pred             EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-ceeEEEeccccCCEEEEEECcCCCE-EEEEcCCCc-
Confidence            3345677899999999954  6999999999999999998732 2233667789999999999999985 889999998 


Q ss_pred             eeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE--cCCCCcEEEEeeCCCcEEEEeCCCCcee------
Q psy4578         693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF--NPYSEYILATGSADKTVALWDLRNLKLK------  764 (860)
Q Consensus       693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~--sp~g~~llasgs~Dg~I~IWDl~~~~~~------  764 (860)
                                    |++||+.++   . .....+|...|++++|  +|++. ++++|+.||.|++||++++...      
T Consensus       110 --------------v~iwd~~~~---~-~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~  170 (368)
T 3mmy_A          110 --------------AKMWDLSSN---Q-AIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLP  170 (368)
T ss_dssp             --------------EEEEETTTT---E-EEEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred             --------------EEEEEcCCC---C-ceeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecC
Confidence                          999999876   2 3346679999999999  88888 4899999999999998765320      


Q ss_pred             --------------------------------------------------------------------------------
Q psy4578         765 --------------------------------------------------------------------------------  764 (860)
Q Consensus       765 --------------------------------------------------------------------------------  764 (860)
                                                                                                      
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~  250 (368)
T 3mmy_A          171 ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP  250 (368)
T ss_dssp             SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred             CCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence                                                                                            


Q ss_pred             ---eEEeccCCC------------ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCcc
Q psy4578         765 ---LHSFESHKD------------EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT  829 (860)
Q Consensus       765 ---~~~~~~h~~------------~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~  829 (860)
                         ...+.+|..            .|++++|+|++++ |++|+.||.|++||+.++              .++..+.+|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~~--------------~~~~~~~~~~  315 (368)
T 3mmy_A          251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATVGSDGRFSFWDKDAR--------------TKLKTSEQLD  315 (368)
T ss_dssp             HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-EEEEETTSCEEEEETTTT--------------EEEEECCCCS
T ss_pred             cccceeeeeeecccccccccccccceEEEEEecCCCE-EEEEccCCeEEEEECCCC--------------cEEEEecCCC
Confidence               112223333            6999999999986 899999999999999873              4566677899


Q ss_pred             CceEEEEEccCCCeEEEEEeCCC
Q psy4578         830 AKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       830 ~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      ..|++++|+|+|++++ +++.|+
T Consensus       316 ~~v~~~~~s~~g~~l~-~~s~d~  337 (368)
T 3mmy_A          316 QPISACCFNHNGNIFA-YASSYD  337 (368)
T ss_dssp             SCEEEEEECTTSSCEE-EEECCC
T ss_pred             CCceEEEECCCCCeEE-EEeccc
Confidence            9999999999999755 555554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.89  E-value=5.1e-22  Score=223.67  Aligned_cols=214  Identities=21%  Similarity=0.385  Sum_probs=176.0

Q ss_pred             EEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .+.+|+....+ +..+..|.+.|.+++|+   ++++++|+.||.|++||+...  ......+.+|.+.|.+++|+|++..
T Consensus       157 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~  231 (401)
T 4aez_A          157 LVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIA--NHQIGTLQGHSSEVCGLAWRSDGLQ  231 (401)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             eEEEEECcCCeEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccC--cceeeEEcCCCCCeeEEEEcCCCCE
Confidence            35555554444 44445677899999995   479999999999999999853  3456777889999999999999884


Q ss_pred             EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee--CCCcEEEEeCC
Q psy4578         682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS--ADKTVALWDLR  759 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs--~Dg~I~IWDl~  759 (860)
                       +++|+.||.               |++||++++   ..+..+.+|...|.+++|+|++..++++|+  .||.|++||++
T Consensus       232 -l~s~~~d~~---------------v~iwd~~~~---~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~  292 (401)
T 4aez_A          232 -LASGGNDNV---------------VQIWDARSS---IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA  292 (401)
T ss_dssp             -EEEEETTSC---------------EEEEETTCS---SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred             -EEEEeCCCe---------------EEEccCCCC---CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence             899999998               999999986   667778889999999999999988888876  79999999999


Q ss_pred             CCceeeEEeccCCCceEEEEEcCCCCCEEEEE--ECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578         760 NLKLKLHSFESHKDEIFQVQWSPHNETILASS--GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  837 (860)
Q Consensus       760 ~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tg--s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~  837 (860)
                      ++.. +..+. +...|.+++|+|+++. ++++  +.||.|++||+.+...            .......+|.+.|.+++|
T Consensus       293 ~~~~-~~~~~-~~~~v~~~~~s~~~~~-l~~~~g~~dg~i~v~~~~~~~~------------~~~~~~~~h~~~v~~~~~  357 (401)
T 4aez_A          293 TGAR-VNTVD-AGSQVTSLIWSPHSKE-IMSTHGFPDNNLSIWSYSSSGL------------TKQVDIPAHDTRVLYSAL  357 (401)
T ss_dssp             TCCE-EEEEE-CSSCEEEEEECSSSSE-EEEEECTTTCEEEEEEEETTEE------------EEEEEEECCSSCCCEEEE
T ss_pred             CCCE-EEEEe-CCCcEEEEEECCCCCe-EEEEeecCCCcEEEEecCCccc------------eeEEEecCCCCCEEEEEE
Confidence            9876 56664 6788999999999986 5563  3899999999887322            233446689999999999


Q ss_pred             ccCCCeEEEEEeCCCeEee
Q psy4578         838 NPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       838 spdg~~Llasgs~Dg~IrI  856 (860)
                      +|+|++ +++++.||.|++
T Consensus       358 s~dg~~-l~s~~~dg~i~i  375 (401)
T 4aez_A          358 SPDGRI-LSTAASDENLKF  375 (401)
T ss_dssp             CTTSSE-EEEECTTSEEEE
T ss_pred             CCCCCE-EEEEeCCCcEEE
Confidence            999994 779999999886

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.89  E-value=1.1e-22  Score=229.07  Aligned_cols=208  Identities=13%  Similarity=0.150  Sum_probs=147.9

Q ss_pred             hhhhhcccceeeeEeec-------cCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEe
Q psy4578         615 CQLLDKLRLLIDVAWHL-------LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS  687 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp-------~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs  687 (860)
                      ..+.+|.+.|++++|+|       .++++||+|+.|++|+|||+.++   .+.....+|...|.+++|+|++..++++|+
T Consensus       130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~  206 (393)
T 4gq1_A          130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE---GPILAGYPLSSPGISVQFRPSNPNQLIVGE  206 (393)
T ss_dssp             CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT---EEEEEEEECSSCEEEEEEETTEEEEEEEEE
T ss_pred             cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC---ceeeeecCCCCCcEEEEECCCCCceEEecC
Confidence            34567889999999987       36789999999999999999874   445566778899999999999887899999


Q ss_pred             CCCceeeecccccccCCCcEEEEeCCCCCCCCC----------------------eeeecCCCCCeEEEEEc-CCCCcEE
Q psy4578         688 ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKP----------------------SHTVDAHTAEVNCLSFN-PYSEYIL  744 (860)
Q Consensus       688 ~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~----------------------~~~~~~h~~~I~sl~~s-p~g~~ll  744 (860)
                      .||+               |++||++++.....                      .....+|...+.++.|+ |++. .+
T Consensus       207 ~d~~---------------v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l  270 (393)
T 4gq1_A          207 RNGN---------------IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GI  270 (393)
T ss_dssp             TTSE---------------EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC-EE
T ss_pred             CCCE---------------EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC-EE
Confidence            9999               88888876532111                      11234688889999987 7888 48


Q ss_pred             EEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEE------------------cC-CCCCEEEEEECCCcEEEEECCCC
Q psy4578         745 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW------------------SP-HNETILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       745 asgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~f------------------sp-~g~~lL~tgs~Dg~I~iWdl~~~  805 (860)
                      ++++.|+++++||+..... ...+..|...+..+.+                  +| .+..++++|+.||.|++||+.++
T Consensus       271 ~s~s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~  349 (393)
T 4gq1_A          271 LAMCKSGAWLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK  349 (393)
T ss_dssp             EEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT
T ss_pred             EEEeCCCCEEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC
Confidence            9999999999999987654 3444444444333333                  32 34445777889999999999874


Q ss_pred             CcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeec
Q psy4578         806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKP  857 (860)
Q Consensus       806 ~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~  857 (860)
                      ..              .....+|..+|.+++|+|||++ ||++++||++.|+
T Consensus       350 ~~--------------~~~~~~~~~~V~svafspdG~~-LA~as~~Gv~lvr  386 (393)
T 4gq1_A          350 DS--------------NSIPIQLGMPIVDFCWHQDGSH-LAIATEGSVLLTR  386 (393)
T ss_dssp             TC--------------CEEEEECSSCEEEEEECTTSSE-EEEEESSEEEEEE
T ss_pred             cE--------------EEEecCCCCcEEEEEEcCCCCE-EEEEeCCCeEEEE
Confidence            32              3344568889999999999995 7789999987664

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.89  E-value=1.7e-21  Score=211.41  Aligned_cols=210  Identities=16%  Similarity=0.280  Sum_probs=172.9

Q ss_pred             EEEeeccchhh---hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCC
Q psy4578         603 VMYLENKTRAQ---ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       603 il~l~n~~~~~---l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g  679 (860)
                      .+.+|+....+   ......+...|.+++|+| ++.++++++.||.|++||+.++   .....+..|...+.+++|+|++
T Consensus       120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~  195 (337)
T 1gxr_A          120 TLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTS
T ss_pred             cEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCC---ceeeeeecccCceEEEEECCCC
Confidence            45555554443   333445667899999998 7889999999999999999874   5567778899999999999999


Q ss_pred             CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578         680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR  759 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~  759 (860)
                      .. +++++.||.               |++||++++   ..+..+ .|...+.+++|+|++.. +++|+.||.|++||++
T Consensus       196 ~~-l~~~~~dg~---------------i~~~d~~~~---~~~~~~-~~~~~v~~~~~s~~~~~-l~~~~~~~~i~~~~~~  254 (337)
T 1gxr_A          196 TK-LWTGGLDNT---------------VRSWDLREG---RQLQQH-DFTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVN  254 (337)
T ss_dssp             SE-EEEEETTSE---------------EEEEETTTT---EEEEEE-ECSSCEEEEEECTTSSE-EEEEETTSCEEEEETT
T ss_pred             CE-EEEEecCCc---------------EEEEECCCC---ceEeee-cCCCceEEEEECCCCCE-EEEEcCCCcEEEEECC
Confidence            85 889999998               999999876   334443 47889999999999995 8899999999999999


Q ss_pred             CCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc
Q psy4578         760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP  839 (860)
Q Consensus       760 ~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp  839 (860)
                      +...  ..+..|...|.+++|+|+++. +++++.||.|++||+.+....               ....|...|.+++|+|
T Consensus       255 ~~~~--~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~~~~~~~~~---------------~~~~~~~~v~~~~~s~  316 (337)
T 1gxr_A          255 KPDK--YQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYGASI---------------FQSKESSSVLSCDISV  316 (337)
T ss_dssp             SSCE--EEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEE---------------EEEECSSCEEEEEECT
T ss_pred             CCCe--EEEcCCccceeEEEECCCCCE-EEEecCCCcEEEEECCCCeEE---------------EEecCCCcEEEEEECC
Confidence            8764  567789999999999999985 889999999999999874321               2235788999999999


Q ss_pred             CCCeEEEEEeCCCeEee
Q psy4578         840 NEPWVICSVSEDNIMQK  856 (860)
Q Consensus       840 dg~~Llasgs~Dg~IrI  856 (860)
                      ++++ +++++.||.|++
T Consensus       317 ~~~~-l~~~~~dg~i~i  332 (337)
T 1gxr_A          317 DDKY-IVTGSGDKKATV  332 (337)
T ss_dssp             TSCE-EEEEETTSCEEE
T ss_pred             CCCE-EEEecCCCeEEE
Confidence            9995 778889998875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.89  E-value=6.5e-22  Score=220.89  Aligned_cols=219  Identities=16%  Similarity=0.175  Sum_probs=173.2

Q ss_pred             EEEeeccchhh-------hhhhhhcccceeeeEeeccC----C---cEEEEEeCCCcEEEEEcCCCCccc--CeeeccCC
Q psy4578         603 VMYLENKTRAQ-------ICQLLDKLRLLIDVAWHLLH----E---SLFGSVADDQKLMIWDTRSHNVSK--PSHTVDAH  666 (860)
Q Consensus       603 il~l~n~~~~~-------l~~l~~~~~~V~~v~~sp~~----~---~~lasgs~DG~I~IWd~~~~~~~~--~~~~~~~h  666 (860)
                      .+.+|+.....       +..+..|...|.+++|+| +    +   .+|++|+.||.|++||+.++....  ....+..|
T Consensus        37 ~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  115 (397)
T 1sq9_A           37 YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLL  115 (397)
T ss_dssp             EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCS
T ss_pred             EEEEEECCCcccccCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccc
Confidence            35555555544       555567788999999998 5    7   899999999999999998753200  15667777


Q ss_pred             -----CCCeeEEEEc----cCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCC------CCCCC--Ceeee-----
Q psy4578         667 -----TAEVNCLSFN----PYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRS------HNVSK--PSHTV-----  724 (860)
Q Consensus       667 -----~~~V~~l~~s----p~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~------~~~~~--~~~~~-----  724 (860)
                           ...|.+++|+    |++..++++|+.||.               |++||+.+      +....  ....+     
T Consensus       116 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~---------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (397)
T 1sq9_A          116 DSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT---------------TYIWKFHPFADESNSLTLNWSPTLELQGTVE  180 (397)
T ss_dssp             CTTGGGSCEEEEEEECCC----CEEEEEEETTSC---------------EEEEEEESSSSHHHHTTTCCCCEEEEEEEEC
T ss_pred             ccccCCCcEEEEEEeeccCCCCceEEEEEeCCCc---------------EEEEeCCccccccccceeeccCcceeeeeec
Confidence                 5899999999    999854889999998               99999987      53221  11144     


Q ss_pred             --cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc---C---CCceEEEEEcCCCCCEEEEEECC--
Q psy4578         725 --DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES---H---KDEIFQVQWSPHNETILASSGTD--  794 (860)
Q Consensus       725 --~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~---h---~~~V~~l~fsp~g~~lL~tgs~D--  794 (860)
                        ..|...|.+++|+|++  ++++|+.||.|++||+++... +..+..   |   ...|.+++|+|++.+ |++++.|  
T Consensus       181 ~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~h~~~~~~i~~i~~~~~~~~-l~~~~~d~~  256 (397)
T 1sq9_A          181 SPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRP-LYNFESQHSMINNSNSIRSVKFSPQGSL-LAIAHDSNS  256 (397)
T ss_dssp             CSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEE-EEEEECCC---CCCCCEEEEEECSSTTE-EEEEEEETT
T ss_pred             cccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCce-eEEEeccccccccCCccceEEECCCCCE-EEEEecCCC
Confidence              4588999999999999  599999999999999998876 778888   8   999999999999985 8899999  


Q ss_pred             -CcEEEEECCCCCcccccccccCCCCccEEEecC-------------ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         795 -RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG-------------HTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       795 -g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~-------------h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                       |.|++||+++..              .+..+.+             |...|.+++|+|++++ +++++.|+.|++
T Consensus       257 ~g~i~i~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i  317 (397)
T 1sq9_A          257 FGCITLYETEFGE--------------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRF  317 (397)
T ss_dssp             EEEEEEEETTTCC--------------EEEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEE
T ss_pred             CceEEEEECCCCc--------------ccceeccCcccccccccccccCCcEEEEEECCCCCE-EEEEeCCCeEEE
Confidence             999999998743              3344445             8999999999999995 778999999886

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.89  E-value=9.1e-22  Score=217.18  Aligned_cols=231  Identities=17%  Similarity=0.127  Sum_probs=173.9

Q ss_pred             EEeeccchhh---hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe-eeccCCCCCeeEEEEccCC
Q psy4578         604 MYLENKTRAQ---ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS-HTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       604 l~l~n~~~~~---l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~-~~~~~h~~~V~~l~~sp~g  679 (860)
                      +.+|+....+   ......+...|.+++|+| ++.++++|+.||.|++||+..+...... ....+|...|++++|+|++
T Consensus        76 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C           76 AYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             EEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             EEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence            4455554443   333456778999999998 7889999999999999999875422222 2336789999999999999


Q ss_pred             CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCC---------------CCCCCeeeecCCCCCeEEEEEcCCCCcEE
Q psy4578         680 EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSH---------------NVSKPSHTVDAHTAEVNCLSFNPYSEYIL  744 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~---------------~~~~~~~~~~~h~~~I~sl~~sp~g~~ll  744 (860)
                      .. +++|+.||.               |++||++..               .....+..+.+|...|.+++|+|++.+ +
T Consensus       155 ~~-l~~~~~dg~---------------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l  217 (372)
T 1k8k_C          155 VL-LAAGSCDFK---------------CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR-V  217 (372)
T ss_dssp             SE-EEEEETTSC---------------EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE-E
T ss_pred             CE-EEEEcCCCC---------------EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCE-E
Confidence            84 899999998               999996521               112566777789999999999999984 9


Q ss_pred             EEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC--CC--ccccccccc-----
Q psy4578         745 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK--IG--EEQSTEDAE-----  815 (860)
Q Consensus       745 asgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~--~~--~~~~~~~~~-----  815 (860)
                      ++|+.||.|++||++++.. +..+..|...|.+++|+|++. ++++| .||.|++|++..  +.  .........     
T Consensus       218 ~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  294 (372)
T 1k8k_C          218 AWVSHDSTVCLADADKKMA-VATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR  294 (372)
T ss_dssp             EEEETTTEEEEEEGGGTTE-EEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC------
T ss_pred             EEEeCCCEEEEEECCCCce-eEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhh
Confidence            9999999999999998886 788889999999999999997 35555 999999999987  31  111100000     


Q ss_pred             -----------CCCCccE------EEe-cCccCceEEEEEcc-CC---CeEEEEEeCCCeEee
Q psy4578         816 -----------DGPPELL------FIH-GGHTAKISDFSWNP-NE---PWVICSVSEDNIMQK  856 (860)
Q Consensus       816 -----------~~~~~~i------~~~-~~h~~~I~~i~~sp-dg---~~Llasgs~Dg~IrI  856 (860)
                                 .......      ... .+|.+.|++++|++ +|   . ++++|+.||.|++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~-~l~s~~~Dg~i~~  356 (372)
T 1k8k_C          295 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTGMDGGMSI  356 (372)
T ss_dssp             --CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEETTSEEEE
T ss_pred             hcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee-eEEEecCCCceEE
Confidence                       0001111      222 48999999999875 54   6 6889999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.5e-21  Score=214.38  Aligned_cols=203  Identities=20%  Similarity=0.342  Sum_probs=171.5

Q ss_pred             hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         614 ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      ...+.+|.+.|++++|+| ++.+|++|+.||.|++||+.++   ..+..+.+|...|++++|+|++++ +++++.||.  
T Consensus        25 ~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~dg~--   97 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCFTKY-CVTGSADYS--   97 (369)
T ss_dssp             EEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSE-EEEEETTTE--
T ss_pred             cEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCCCCE-EEEEeCCCe--
Confidence            344567889999999998 7889999999999999999884   557788899999999999999985 889999998  


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCce-----
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKL-----  763 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~-----  763 (860)
                                   |++||+.++   ..+..+. |...|.+++|+|++.+ +++++.+     |.|++||++....     
T Consensus        98 -------------i~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~  159 (369)
T 3zwl_B           98 -------------IKLWDVSNG---QCVATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELT  159 (369)
T ss_dssp             -------------EEEEETTTC---CEEEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred             -------------EEEEECCCC---cEEEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeec
Confidence                         999999886   4555555 8899999999999995 8888888     9999999976542     


Q ss_pred             -----eeEEeccCCC--ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEE
Q psy4578         764 -----KLHSFESHKD--EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  836 (860)
Q Consensus       764 -----~~~~~~~h~~--~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~  836 (860)
                           ....+..|..  .+.+++|+|+++. +++++.||.|++||+++.             ...+.....|...|.+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~  225 (369)
T 3zwl_B          160 KVSEEPIHKIITHEGLDAATVAGWSTKGKY-IIAGHKDGKISKYDVSNN-------------YEYVDSIDLHEKSISDMQ  225 (369)
T ss_dssp             EECSSCSEEEECCTTCCCEEEEEECGGGCE-EEEEETTSEEEEEETTTT-------------TEEEEEEECCSSCEEEEE
T ss_pred             ccccceeeeccCCcCccceeEEEEcCCCCE-EEEEcCCCEEEEEECCCC-------------cEeEEEEecCCCceeEEE
Confidence                 2444556666  9999999999985 889999999999999862             234566678999999999


Q ss_pred             EccCCCeEEEEEeCCCeEee
Q psy4578         837 WNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       837 ~spdg~~Llasgs~Dg~IrI  856 (860)
                      |+|++.+ +++++.|+.|++
T Consensus       226 ~~~~~~~-l~~~~~d~~i~v  244 (369)
T 3zwl_B          226 FSPDLTY-FITSSRDTNSFL  244 (369)
T ss_dssp             ECTTSSE-EEEEETTSEEEE
T ss_pred             ECCCCCE-EEEecCCceEEE
Confidence            9999995 678899998876

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.88  E-value=6.2e-22  Score=224.77  Aligned_cols=209  Identities=15%  Similarity=0.279  Sum_probs=159.3

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc--------ccCeeeccCCC------------CCeeEEEEcc
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV--------SKPSHTVDAHT------------AEVNCLSFNP  677 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~--------~~~~~~~~~h~------------~~V~~l~~sp  677 (860)
                      ..+.+.|++++|+| ++.+|++|+.||.|+|||+.++..        ......+.+|.            ..|++++|+|
T Consensus        25 ~~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           25 VAEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CCGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             ccccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            45678999999998 899999999999999999987531        11356778898            8899999999


Q ss_pred             CCC-eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCC------------------------------------CC
Q psy4578         678 YSE-YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVS------------------------------------KP  720 (860)
Q Consensus       678 ~g~-~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~------------------------------------~~  720 (860)
                      ++. ..+++|+.||+               |++||+.++...                                    ..
T Consensus       104 ~~~~~~l~s~s~d~~---------------i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKT---------------IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP  168 (447)
T ss_dssp             CCSSSEEEEEECSSC---------------EEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEE
T ss_pred             CCCcceEEEeCCCCe---------------EEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccc
Confidence            973 25889999999               777776542100                                    00


Q ss_pred             eee-ecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeE-------EeccCCCceEEEEEcCCCCCEEEEEE
Q psy4578         721 SHT-VDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH-------SFESHKDEIFQVQWSPHNETILASSG  792 (860)
Q Consensus       721 ~~~-~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~-------~~~~h~~~V~~l~fsp~g~~lL~tgs  792 (860)
                      ... ..+|...|.+++|+|++.. +++| .||.|++||++.......       .+.+|...|++++|+|++..+|++|+
T Consensus       169 ~~~~~~~h~~~v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~  246 (447)
T 3dw8_B          169 RRIFANAHTYHINSISINSDYET-YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS  246 (447)
T ss_dssp             EEEECSCCSSCCCEEEECTTSSE-EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE
T ss_pred             eEEeccCCCcceEEEEEcCCCCE-EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe
Confidence            012 3679999999999999984 8888 799999999995443233       25689999999999999944699999


Q ss_pred             CCCcEEEEECCCCCcccccccccCCCCccEEEecCcc------------CceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         793 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT------------AKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       793 ~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~------------~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .||.|++||+++.....          ..+..+.+|.            +.|.+++|+|+|++ +++++. +.|++
T Consensus       247 ~dg~i~iwd~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~i  310 (447)
T 3dw8_B          247 SKGTIRLCDMRASALCD----------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKV  310 (447)
T ss_dssp             TTSCEEEEETTTCSSSC----------TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEE
T ss_pred             CCCeEEEEECcCCcccc----------ceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEE
Confidence            99999999999865321          1123334444            49999999999995 667777 88886

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.88  E-value=2.3e-21  Score=237.85  Aligned_cols=230  Identities=16%  Similarity=0.231  Sum_probs=189.7

Q ss_pred             EEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .+.+|+..... +..+..|.+.|.+++|+| ++.+|++|+.||.|++||+.++   ..+..+.+|.+.|++++|+|++++
T Consensus        36 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~  111 (814)
T 3mkq_A           36 RVEIWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTG---EKVVDFEAHPDYIRSIAVHPTKPY  111 (814)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSSSE
T ss_pred             EEEEEECCCCceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC---cEEEEEecCCCCEEEEEEeCCCCE
Confidence            45566654444 444456788999999999 7889999999999999999885   556777889999999999999995


Q ss_pred             EEEEEeCCCceeeeccccc-----------------------------ccCCCcEEEEeCCCCCCCCCeeeecC-CCCCe
Q psy4578         682 ILATGSADKTQFEVEEEEE-----------------------------ENYDQKLMIWDTRSHNVSKPSHTVDA-HTAEV  731 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~-----------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~-h~~~I  731 (860)
                       +++|+.||.+.+|+....                             +..+|.|++||+.++   .....+.. +...+
T Consensus       112 -l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~~v  187 (814)
T 3mkq_A          112 -VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS---TPNFTLTTGQERGV  187 (814)
T ss_dssp             -EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS---SCSEEEECCCTTCC
T ss_pred             -EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cceeEEecCCCCCE
Confidence             889999999999986543                             235788999999876   33344444 44899


Q ss_pred             EEEEEcC--CCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578         732 NCLSFNP--YSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  809 (860)
Q Consensus       732 ~sl~~sp--~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~  809 (860)
                      .+++|+|  ++. .+++|+.||.|++||++++.. +..+.+|...|.+++|+|+|+ ++++|+.||.|++||+.+.    
T Consensus       188 ~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~----  260 (814)
T 3mkq_A          188 NYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY----  260 (814)
T ss_dssp             CEEEECCSTTCC-EEEEECTTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC----
T ss_pred             EEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC----
Confidence            9999999  888 599999999999999999886 788889999999999999998 4899999999999999873    


Q ss_pred             ccccccCCCCccEEEecCccCceEEEEEccCCCeE-EEEEeCCCeEeec
Q psy4578         810 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWV-ICSVSEDNIMQKP  857 (860)
Q Consensus       810 ~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~L-lasgs~Dg~IrI~  857 (860)
                                ........|...|.+++|+|+|..+ ++++++++.+.+.
T Consensus       261 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (814)
T 3mkq_A          261 ----------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS  299 (814)
T ss_dssp             ----------SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred             ----------cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence                      3456667788999999999999754 7778777776654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.88  E-value=1.7e-21  Score=219.27  Aligned_cols=200  Identities=20%  Similarity=0.333  Sum_probs=165.1

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCC-CcccCeeeccCCCCCeeEEEEcc-CCCeEEEEEeCCCceeeecccccc
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSH-NVSKPSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~-~~~~~~~~~~~h~~~V~~l~~sp-~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      ...++++|....++++|+.||.|+||++... ........+.+|.+.|++++|+| ++. ++++|+.||+          
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~-~l~s~s~dg~----------  105 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN-VIASGSEDCT----------  105 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT-EEEEEETTSE----------
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC-EEEEEeCCCe----------
Confidence            4568888855556667899999999999653 22244566789999999999999 666 6999999998          


Q ss_pred             cCCCcEEEEeCCCCCCC----CCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe--ccCCCce
Q psy4578         702 NYDQKLMIWDTRSHNVS----KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF--ESHKDEI  775 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~----~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~--~~h~~~V  775 (860)
                           |++||+.++...    ..+..+.+|...|.+++|+|++..++++|+.||.|++||++++.. +..+  .+|...|
T Consensus       106 -----v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v  179 (402)
T 2aq5_A          106 -----VMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTI  179 (402)
T ss_dssp             -----EEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCE
T ss_pred             -----EEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCce
Confidence                 999999876321    456778899999999999999865799999999999999999886 7777  7899999


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEe-cCccCc-eEEEEEccCCCeEEEEE---eC
Q psy4578         776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAK-ISDFSWNPNEPWVICSV---SE  850 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~-~~h~~~-I~~i~~spdg~~Llasg---s~  850 (860)
                      .+++|+|+|.. |++|+.||.|++||++++.              .+... .+|.+. +.+++|+|++. ++++|   +.
T Consensus       180 ~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~  243 (402)
T 2aq5_A          180 YSVDWSRDGAL-ICTSCRDKRVRVIEPRKGT--------------VVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMS  243 (402)
T ss_dssp             EEEEECTTSSC-EEEEETTSEEEEEETTTTE--------------EEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTC
T ss_pred             EEEEECCCCCE-EEEEecCCcEEEEeCCCCc--------------eeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCC
Confidence            99999999986 8899999999999998733              34444 567765 89999999988 56677   78


Q ss_pred             CCeEee
Q psy4578         851 DNIMQK  856 (860)
Q Consensus       851 Dg~IrI  856 (860)
                      |+.|++
T Consensus       244 d~~i~i  249 (402)
T 2aq5_A          244 ERQVAL  249 (402)
T ss_dssp             CEEEEE
T ss_pred             CceEEE
Confidence            888876

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.88  E-value=1.2e-21  Score=222.35  Aligned_cols=199  Identities=20%  Similarity=0.334  Sum_probs=152.4

Q ss_pred             cceeeeEeeccCC-cEEEEEeCCCcEEEEEcCCCCcc------------------------------------cCe-eec
Q psy4578         622 RLLIDVAWHLLHE-SLFGSVADDQKLMIWDTRSHNVS------------------------------------KPS-HTV  663 (860)
Q Consensus       622 ~~V~~v~~sp~~~-~~lasgs~DG~I~IWd~~~~~~~------------------------------------~~~-~~~  663 (860)
                      +.|++++|+|+++ ..+++|+.||.|++||+.++...                                    .+. ...
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            7899999999433 78999999999999998752110                                    000 113


Q ss_pred             cCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCee-------eecCCCCCeEEEEE
Q psy4578         664 DAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH-------TVDAHTAEVNCLSF  736 (860)
Q Consensus       664 ~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~-------~~~~h~~~I~sl~~  736 (860)
                      .+|...|++++|+|++.. +++| .||.               |++||+++..  ..+.       .+.+|...|++++|
T Consensus       174 ~~h~~~v~~~~~~~~~~~-l~s~-~d~~---------------i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~  234 (447)
T 3dw8_B          174 NAHTYHINSISINSDYET-YLSA-DDLR---------------INLWHLEITD--RSFNIVDIKPANMEELTEVITAAEF  234 (447)
T ss_dssp             SCCSSCCCEEEECTTSSE-EEEE-CSSE---------------EEEEETTEEE--EEEEEEECCCSSGGGCCCCEEEEEE
T ss_pred             cCCCcceEEEEEcCCCCE-EEEe-CCCe---------------EEEEECCCCC--ceeeeeecccccccccCcceEEEEE
Confidence            679999999999999985 7777 7998               9999988431  1222       36689999999999


Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCce---eeEEeccCCC------------ceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         737 NPYSEYILATGSADKTVALWDLRNLKL---KLHSFESHKD------------EIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       737 sp~g~~llasgs~Dg~I~IWDl~~~~~---~~~~~~~h~~------------~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      +|++..++++|+.||.|++||++++..   ....+.+|..            .|.+++|+|+|++ |++++. |.|++||
T Consensus       235 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~iwd  312 (447)
T 3dw8_B          235 HPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKVWD  312 (447)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEEEE
T ss_pred             CCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEEEe
Confidence            999844699999999999999998764   1466777775            8999999999985 788888 9999999


Q ss_pred             CCC-CCcccccccccCCCCccEEEecCccC---------------ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         802 LSK-IGEEQSTEDAEDGPPELLFIHGGHTA---------------KISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       802 l~~-~~~~~~~~~~~~~~~~~i~~~~~h~~---------------~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +++ .....              .+.+|..               .+..++|+|+|++ +++|+.||.|++
T Consensus       313 ~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~dg~v~i  368 (447)
T 3dw8_B          313 LNMENRPVE--------------TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYNNFFRM  368 (447)
T ss_dssp             TTCCSSCSC--------------CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-EEEECSTTEEEE
T ss_pred             CCCCccccc--------------eeeccccccccccccccccccccceEEEECCCCCE-EEEeccCCEEEE
Confidence            986 33322              2223332               1345999999996 689999999986

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.6e-21  Score=214.77  Aligned_cols=228  Identities=12%  Similarity=0.040  Sum_probs=164.7

Q ss_pred             eeeeeeecceeecccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCC------Ccc
Q psy4578         584 LFLNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSH------NVS  657 (860)
Q Consensus       584 l~~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~------~~~  657 (860)
                      .....++.|..+|.      +.+|+....+....+. ...|.++.|+|.    +++|+.||+|++|+....      ...
T Consensus        46 ~d~~~l~sg~~Dg~------v~iwd~~~~~~~~~~~-~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           46 YDKWVCMCRCEDGA------LHFTQLKDSKTITTIT-TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             EEEEEEEEEEETTE------EEEEEESSSSCEEEEE-EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             CCCCEEEEECCCCc------EEEEECCCCcEEEEEe-cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCc
Confidence            34445555555543      5566655555444333 567999999983    999999999999987631      011


Q ss_pred             cCeeec-cCCCCCeeEEEEcc--CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee-cCCCCCeEE
Q psy4578         658 KPSHTV-DAHTAEVNCLSFNP--YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNC  733 (860)
Q Consensus       658 ~~~~~~-~~h~~~V~~l~~sp--~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~-~~h~~~I~s  733 (860)
                      ..+... .+|.+.|.+++|+|  ++.+ +++|+.||+               |++||++++   ...... ..|...|++
T Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~s~dg~---------------i~~wd~~~~---~~~~~~~~~~~~~i~~  175 (343)
T 3lrv_A          115 KVLREIEVDSANEIIYMYGHNEVNTEY-FIWADNRGT---------------IGFQSYEDD---SQYIVHSAKSDVEYSS  175 (343)
T ss_dssp             CEEEEEECCCSSCEEEEECCC---CCE-EEEEETTCC---------------EEEEESSSS---CEEEEECCCSSCCCCE
T ss_pred             ceeEEeecCCCCCEEEEEcCCCCCCCE-EEEEeCCCc---------------EEEEECCCC---cEEEEEecCCCCceEE
Confidence            212222 36778999999999  8885 899999999               999999986   334433 345568999


Q ss_pred             EEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc-CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccc
Q psy4578         734 LSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  812 (860)
Q Consensus       734 l~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~-h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~  812 (860)
                      ++|+|+|. ++++|+.||.|++||++++......+.. |.+.|++++|+|+|.+ |++++ |+.|++||+++......+.
T Consensus       176 ~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~-l~s~~-~~~v~iwd~~~~~~~~~~~  252 (343)
T 3lrv_A          176 GVLHKDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW-MVVEC-DQTVVCFDLRKDVGTLAYP  252 (343)
T ss_dssp             EEECTTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE-EEEEE-SSBEEEEETTSSTTCBSSC
T ss_pred             EEECCCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE-EEEEe-CCeEEEEEcCCCCcceeec
Confidence            99999999 5999999999999999998873367787 9999999999999985 78888 5599999999865543322


Q ss_pred             cccCCCCccEEEecCccCce--EEEEEccCCCeEEEEEeC-CCeEee
Q psy4578         813 DAEDGPPELLFIHGGHTAKI--SDFSWNPNEPWVICSVSE-DNIMQK  856 (860)
Q Consensus       813 ~~~~~~~~~i~~~~~h~~~I--~~i~~spdg~~Llasgs~-Dg~IrI  856 (860)
                      .           +..|...+  .+++|+|+|++++ +++. |+.++|
T Consensus       253 ~-----------~~~~~~~~~~~~~~~~~~g~~l~-~~s~~d~~i~v  287 (343)
T 3lrv_A          253 T-----------YTIPEFKTGTVTYDIDDSGKNMI-AYSNESNSLTI  287 (343)
T ss_dssp             C-----------CBC-----CCEEEEECTTSSEEE-EEETTTTEEEE
T ss_pred             c-----------cccccccccceEEEECCCCCEEE-EecCCCCcEEE
Confidence            1           11223333  4699999999755 5555 888886

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.88  E-value=7.2e-21  Score=204.41  Aligned_cols=209  Identities=22%  Similarity=0.284  Sum_probs=174.6

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      ..+.+|.+.|++++| | ++.++++|+.||.|++||+.++   .....+..|...|.+++|+|++.. +++|+.||.+.+
T Consensus        12 ~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~   85 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKEL-LLFGGKDTMING   85 (313)
T ss_dssp             EEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTE-EEEEETTSCEEE
T ss_pred             HHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCE-EEEecCCCeEEE
Confidence            334567889999999 6 7888999999999999999773   456667789999999999999984 899999999988


Q ss_pred             eccccc----------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC-CCCcEEE
Q psy4578         695 VEEEEE----------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP-YSEYILA  745 (860)
Q Consensus       695 ~~~~~~----------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp-~g~~lla  745 (860)
                      |+....                            +..+|.|++||  ..   .....+..|...+.+++|+| ++. .++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~---~~~~~~~~~~~~v~~~~~~~~~~~-~l~  159 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG---SLVYNLQAHNASVWDAKVVSFSEN-KFL  159 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT---EEEEEEECCSSCEEEEEEEETTTT-EEE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC---cEEEecccCCCceeEEEEccCCCC-EEE
Confidence            875432                            24588999999  22   56677888999999999999 666 599


Q ss_pred             EeeCCCcEEEEeCCCCceeeEEecc-CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEE
Q psy4578         746 TGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI  824 (860)
Q Consensus       746 sgs~Dg~I~IWDl~~~~~~~~~~~~-h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~  824 (860)
                      +|+.||.|++||..  .. ...+.. |...+.+++|+|++.  +++|+.||.|++||+++.              ..+..
T Consensus       160 ~~~~d~~i~i~d~~--~~-~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~--------------~~~~~  220 (313)
T 3odt_A          160 TASADKTIKLWQND--KV-IKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTG--------------DVLRT  220 (313)
T ss_dssp             EEETTSCEEEEETT--EE-EEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTC--------------CEEEE
T ss_pred             EEECCCCEEEEecC--ce-EEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCch--------------hhhhh
Confidence            99999999999933  33 556666 899999999999996  789999999999999873              34566


Q ss_pred             ecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         825 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       825 ~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +.+|.+.|++++|+|++.  +++++.||.|++
T Consensus       221 ~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~i  250 (313)
T 3odt_A          221 YEGHESFVYCIKLLPNGD--IVSCGEDRTVRI  250 (313)
T ss_dssp             EECCSSCEEEEEECTTSC--EEEEETTSEEEE
T ss_pred             hhcCCceEEEEEEecCCC--EEEEecCCEEEE
Confidence            678999999999999994  668899999886

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.4e-21  Score=238.91  Aligned_cols=213  Identities=23%  Similarity=0.357  Sum_probs=174.3

Q ss_pred             hhhhhhcccceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCC
Q psy4578         614 ICQLLDKLRLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADK  690 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg  690 (860)
                      ...+.+|.+.|++++|+|+ ++.++++|+.||.|++||+.++. ......+.+|...|++++|+|+  +. .+++|+.||
T Consensus        46 ~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg  123 (753)
T 3jro_A           46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDG  123 (753)
T ss_dssp             EEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTS
T ss_pred             ceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc-ccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCC
Confidence            4445568889999999973 28899999999999999998753 1256677889999999999998  77 599999999


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC-------------CCcEEEEeeCCCcEEEEe
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY-------------SEYILATGSADKTVALWD  757 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~-------------g~~llasgs~Dg~I~IWD  757 (860)
                      .               |++||++++.. .....+.+|...|.+++|+|.             +. ++++|+.||.|++||
T Consensus       124 ~---------------I~vwdl~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd  186 (753)
T 3jro_A          124 K---------------VSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWK  186 (753)
T ss_dssp             E---------------EEEEECCSSSC-CCCEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEE
T ss_pred             c---------------EEEEEeecCCC-cceeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEe
Confidence            8               99999988643 344567789999999999994             66 499999999999999


Q ss_pred             CCCCc---eeeEEeccCCCceEEEEEcCC---CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCc
Q psy4578         758 LRNLK---LKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK  831 (860)
Q Consensus       758 l~~~~---~~~~~~~~h~~~V~~l~fsp~---g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~  831 (860)
                      ++++.   .....+.+|...|++++|+|+   +. ++++|+.||.|++||+++......         .......+|.+.
T Consensus       187 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~---------~~~~~~~~~~~~  256 (753)
T 3jro_A          187 YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWK---------KTLLKEEKFPDV  256 (753)
T ss_dssp             EETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSSCCB---------CCBSSSSCCSSC
T ss_pred             ccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCCcce---------eEEeccCCCCCc
Confidence            98774   235677889999999999999   66 599999999999999988542211         122233468889


Q ss_pred             eEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         832 ISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       832 I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |++++|+|+|++ +++|+.||.|++
T Consensus       257 v~~l~~spdg~~-l~s~s~Dg~I~v  280 (753)
T 3jro_A          257 LWRASWSLSGNV-LALSGGDNKVTL  280 (753)
T ss_dssp             CCCEEECTTTCC-EEEECSSSCEEC
T ss_pred             eEEEEEcCCCCE-EEEEcCCCEEEE
Confidence            999999999995 778889998886

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.87  E-value=3e-21  Score=212.59  Aligned_cols=173  Identities=21%  Similarity=0.310  Sum_probs=146.5

Q ss_pred             EEEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .+.+|+...... ..+.+|.+.|.+++|+| ++.++++|+.||.|++||+.++   .....+.+|...|++++|+|++..
T Consensus       165 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~~~  240 (340)
T 1got_B          165 TCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGNA  240 (340)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECTTSSE
T ss_pred             cEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC---eeEEEEcCCcCCEEEEEEcCCCCE
Confidence            345566555443 34456778999999998 7889999999999999999874   556788899999999999999985


Q ss_pred             EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeec--CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578         682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR  759 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~--~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~  759 (860)
                       +++|+.||+               |++||++++   ..+..+.  .+...|++++|+|+|.+ +++|+.||.|++||+.
T Consensus       241 -l~s~s~d~~---------------v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          241 -FATGSDDAT---------------CRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             -EEEEETTSC---------------EEEEETTTT---EEEEEECCTTCCSCEEEEEECTTSSE-EEEEETTSEEEEEETT
T ss_pred             -EEEEcCCCc---------------EEEEECCCC---cEEEEEccCCcccceEEEEECCCCCE-EEEECCCCeEEEEEcc
Confidence             899999999               999999876   3333332  33457999999999994 9999999999999999


Q ss_pred             CCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         760 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       760 ~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      +... ...+.+|.+.|.+++|+|+|.+ |++|+.||+|++||
T Consensus       301 ~~~~-~~~~~~h~~~v~~~~~s~dg~~-l~s~s~D~~i~iWd  340 (340)
T 1got_B          301 KADR-AGVLAGHDNRVSCLGVTDDGMA-VATGSWDSFLKIWN  340 (340)
T ss_dssp             TCCE-EEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEEC
T ss_pred             cCcE-eeEeecCCCcEEEEEEcCCCCE-EEEEcCCccEEecC
Confidence            8876 7888999999999999999986 89999999999997

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.87  E-value=2.3e-20  Score=213.63  Aligned_cols=210  Identities=22%  Similarity=0.406  Sum_probs=173.2

Q ss_pred             EEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc--CCC
Q psy4578         604 MYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP--YSE  680 (860)
Q Consensus       604 l~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp--~g~  680 (860)
                      +.+|+....+ +..+.+|.+.|.+++|++ ++ .+++|+.||+|++||+.++   .....+.+|...|.+++|++  ++.
T Consensus       144 i~vwd~~~~~~~~~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~  218 (464)
T 3v7d_B          144 IRVYDSINKKFLLQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKG---CCTHVFEGHNSTVRCLDIVEYKNIK  218 (464)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEEESSSCE
T ss_pred             EEEEECCCCcEEEEEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCC---cEEEEECCCCCccEEEEEecCCCCC
Confidence            4555554444 344456889999999997 34 9999999999999999884   55778889999999999995  445


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCC--------------------CeeeecCCCCCeEEEEEcCCC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSK--------------------PSHTVDAHTAEVNCLSFNPYS  740 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~--------------------~~~~~~~h~~~I~sl~~sp~g  740 (860)
                       .+++|+.||+               |++||+.+.....                    .+..+.+|...|.++  ++++
T Consensus       219 -~l~s~s~d~~---------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~  280 (464)
T 3v7d_B          219 -YIVTGSRDNT---------------LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG  280 (464)
T ss_dssp             -EEEEEETTSC---------------EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET
T ss_pred             -EEEEEcCCCc---------------EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC
Confidence             6999999999               8999988753211                    145677899998887  5567


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCc
Q psy4578         741 EYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE  820 (860)
Q Consensus       741 ~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~  820 (860)
                      . .+++|+.||.|++||++++.. +..+.+|...|.+++|+|+++. +++|+.||.|++||+++              ..
T Consensus       281 ~-~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~vwd~~~--------------~~  343 (464)
T 3v7d_B          281 N-IVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIYSTIYDHERKR-CISASMDTTIRIWDLEN--------------GE  343 (464)
T ss_dssp             T-EEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTT--------------TE
T ss_pred             C-EEEEEeCCCeEEEEECCCCcE-EEEecCCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCC--------------Cc
Confidence            7 599999999999999999886 7888999999999999999985 89999999999999987              34


Q ss_pred             cEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         821 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       821 ~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++..+.+|...|.+++|++  . .+++++.||.|++
T Consensus       344 ~~~~~~~h~~~v~~~~~~~--~-~l~s~s~dg~v~v  376 (464)
T 3v7d_B          344 LMYTLQGHTALVGLLRLSD--K-FLVSAAADGSIRG  376 (464)
T ss_dssp             EEEEECCCSSCEEEEEECS--S-EEEEEETTSEEEE
T ss_pred             EEEEEeCCCCcEEEEEEcC--C-EEEEEeCCCcEEE
Confidence            5667788999999999983  5 5889999999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.87  E-value=9.6e-21  Score=216.74  Aligned_cols=213  Identities=14%  Similarity=0.143  Sum_probs=163.1

Q ss_pred             cccceeeeEeeccCCcE-EEEEeCCCcEEEEEcC--CCCcccCeeecc--CCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         620 KLRLLIDVAWHLLHESL-FGSVADDQKLMIWDTR--SHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~-lasgs~DG~I~IWd~~--~~~~~~~~~~~~--~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      +.+.|.+++|+| ++.+ +++|+.||.|++||+.  ++   ..+..+.  .|...|++++|+|++.+ +++|+.+|.   
T Consensus       101 ~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~~g~---  172 (450)
T 2vdu_B          101 IYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSK---NVLKLRKRFCFSKRPNAISIAEDDTT-VIIADKFGD---  172 (450)
T ss_dssp             CCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSS---SCEEEEEEEECSSCEEEEEECTTSSE-EEEEETTSE---
T ss_pred             cCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCC---ceeeeeecccCCCCceEEEEcCCCCE-EEEEeCCCc---
Confidence            334799999999 5666 5999999999999998  54   3344443  56789999999999985 888988988   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCC-CeeeecCCCCCeEEEEEcCC---CCcEEEEeeCCCcEEEEeCCCCceeeEE-ec
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSK-PSHTVDAHTAEVNCLSFNPY---SEYILATGSADKTVALWDLRNLKLKLHS-FE  769 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~-~~~~~~~h~~~I~sl~~sp~---g~~llasgs~Dg~I~IWDl~~~~~~~~~-~~  769 (860)
                                  +++|++.++.... ....+.+|...|++++|+|+   +. +|++|+.|+.|++||++++.. +.. +.
T Consensus       173 ------------v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~-~~~~~~  238 (450)
T 2vdu_B          173 ------------VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFI-VDKWLF  238 (450)
T ss_dssp             ------------EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTC-EEEECC
T ss_pred             ------------EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCce-eeeeec
Confidence                        9999998875433 44467789999999999999   77 599999999999999998886 444 66


Q ss_pred             cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC----------CCCc-cEEEecCccCceEEEEEc
Q psy4578         770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED----------GPPE-LLFIHGGHTAKISDFSWN  838 (860)
Q Consensus       770 ~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~----------~~~~-~i~~~~~h~~~I~~i~~s  838 (860)
                      +|...|++++|+ ++++ |++|+.|+.|++||+.++.....+.....          .+.. .......+...|.+++|+
T Consensus       239 ~h~~~v~~~~~s-d~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  316 (450)
T 2vdu_B          239 GHKHFVSSICCG-KDYL-LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS  316 (450)
T ss_dssp             CCSSCEEEEEEC-STTE-EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred             CCCCceEEEEEC-CCCE-EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence            899999999999 8875 89999999999999998665433321100          0000 000001334679999999


Q ss_pred             cCCCeEEEEEeCCCeEee
Q psy4578         839 PNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       839 pdg~~Llasgs~Dg~IrI  856 (860)
                      |+++++++++..|+.|+|
T Consensus       317 ~~~~~l~~~~~~d~~i~i  334 (450)
T 2vdu_B          317 KNLPFVAFFVEATKCIII  334 (450)
T ss_dssp             SSSSEEEEEETTCSEEEE
T ss_pred             CCCCEEEEEECCCCeEEE
Confidence            999976655558888876

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3e-21  Score=235.92  Aligned_cols=208  Identities=19%  Similarity=0.339  Sum_probs=173.8

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCCceee
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTQFE  694 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg~i~~  694 (860)
                      +.+|.+.|++++|+| ++.++++|+.||.|++||+.++. ......+.+|.+.|++++|+|+  ++ .+++|+.||.   
T Consensus         5 l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~-~l~s~s~Dg~---   78 (753)
T 3jro_A            5 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGK---   78 (753)
T ss_dssp             ---CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS-EEEEEETTSC---
T ss_pred             cccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC-EEEEEeCCCe---
Confidence            457789999999998 78899999999999999997432 3566778899999999999987  76 5999999999   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC--CCcEEEEeeCCCcEEEEeCCCCce-eeEEeccC
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTVALWDLRNLKL-KLHSFESH  771 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~--g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~h  771 (860)
                                  |++||+.++.. .....+.+|...|++++|+|+  +. ++++|+.||.|++||+++... ....+.+|
T Consensus        79 ------------I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~  144 (753)
T 3jro_A           79 ------------VLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAH  144 (753)
T ss_dssp             ------------EEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred             ------------EEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence                        99999987621 256777889999999999999  77 599999999999999988732 24567789


Q ss_pred             CCceEEEEEcCC-------------CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc
Q psy4578         772 KDEIFQVQWSPH-------------NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN  838 (860)
Q Consensus       772 ~~~V~~l~fsp~-------------g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s  838 (860)
                      ...|.+++|+|.             +.. +++|+.||.|++||+++....          ..+.....+|.+.|++++|+
T Consensus       145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~-l~sgs~dg~I~iwd~~~~~~~----------~~~~~~~~~h~~~V~~l~~s  213 (753)
T 3jro_A          145 AIGVNSASWAPATIEEDGEHNGTKESRK-FVTGGADNLVKIWKYNSDAQT----------YVLESTLEGHSDWVRDVAWS  213 (753)
T ss_dssp             SSCEEEEEECCCC---------CGGGCC-EEEEETTSCEEEEEEETTTTE----------EEEEEEECCCSSCEEEEEEC
T ss_pred             CCceEEEEecCcccccccccccCCCCCE-EEEEECCCeEEEEeccCCccc----------ceeeeeecCCCCcEEEEEec
Confidence            999999999994             665 899999999999999874321          24556778999999999999


Q ss_pred             cC---CCeEEEEEeCCCeEee
Q psy4578         839 PN---EPWVICSVSEDNIMQK  856 (860)
Q Consensus       839 pd---g~~Llasgs~Dg~IrI  856 (860)
                      |+   +. ++++|+.||.|++
T Consensus       214 p~~~~~~-~l~s~s~Dg~I~i  233 (753)
T 3jro_A          214 PTVLLRS-YLASVSQDRTCII  233 (753)
T ss_dssp             CCCSSSE-EEEEEESSSCEEE
T ss_pred             cCCCCCC-EEEEEecCCEEEE
Confidence            99   66 6889999999886

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.86  E-value=5.4e-21  Score=234.55  Aligned_cols=201  Identities=19%  Similarity=0.381  Sum_probs=173.3

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      +.+|.+.|.+++|+| ++.++++|+.||.|++||+.++   ..+..+.+|.+.|++++|+|+++. +++|+.||.     
T Consensus         9 ~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~-----   78 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQ---VEVRSIQVTETPVRAGKFIARKNW-IIVGSDDFR-----   78 (814)
T ss_dssp             EEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTE-EEEEETTSE-----
T ss_pred             eecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCC---ceEEEEecCCCcEEEEEEeCCCCE-EEEEeCCCe-----
Confidence            456778999999999 7899999999999999999884   556778899999999999999985 899999998     


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceE
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIF  776 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~  776 (860)
                                |++||+.++   ..+..+.+|.+.|++++|+|++.+ +++|+.||.|++||++++......+.+|...|.
T Consensus        79 ----------i~vw~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  144 (814)
T 3mkq_A           79 ----------IRVFNYNTG---EKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM  144 (814)
T ss_dssp             ----------EEEEETTTC---CEEEEEECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE
T ss_pred             ----------EEEEECCCC---cEEEEEecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE
Confidence                      999999887   667788899999999999999995 889999999999999987555778889999999


Q ss_pred             EEEEcC-CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc--CCCeEEEEEeCCCe
Q psy4578         777 QVQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP--NEPWVICSVSEDNI  853 (860)
Q Consensus       777 ~l~fsp-~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp--dg~~Llasgs~Dg~  853 (860)
                      +++|+| ++. .+++|+.||.|++||+.+....             ......+...|..++|+|  ++. ++++++.||.
T Consensus       145 ~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~  209 (814)
T 3mkq_A          145 CVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPN-------------FTLTTGQERGVNYVDYYPLPDKP-YMITASDDLT  209 (814)
T ss_dssp             EEEEETTEEE-EEEEEETTSEEEEEETTCSSCS-------------EEEECCCTTCCCEEEECCSTTCC-EEEEECTTSE
T ss_pred             EEEEEcCCCC-EEEEEeCCCeEEEEECCCCcce-------------eEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCE
Confidence            999999 665 5899999999999999764322             222234558899999999  888 5779999998


Q ss_pred             Eee
Q psy4578         854 MQK  856 (860)
Q Consensus       854 IrI  856 (860)
                      |++
T Consensus       210 i~~  212 (814)
T 3mkq_A          210 IKI  212 (814)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.86  E-value=1.4e-20  Score=206.09  Aligned_cols=201  Identities=14%  Similarity=0.246  Sum_probs=160.8

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeC---CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC---CCeEEEEEeCCCc
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVAD---DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY---SEYILATGSADKT  691 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~---DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~---g~~llasgs~Dg~  691 (860)
                      .+|.+.|.+++|+|++..++++|+.   ||.|++||+.++...  .....+|...|++++|+|+   +. ++++|+.||.
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~   91 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK--LLREIEKAKPIKCGTFGATSLQQR-YLATGDFGGN   91 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE--EEEEEEESSCEEEEECTTCCTTTC-CEEEEETTSC
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc--ceeeecccCcEEEEEEcCCCCCCc-eEEEecCCCe
Confidence            3477899999999965567777876   999999999875321  1222378999999999998   46 5899999998


Q ss_pred             eeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE------cCCCCcEEEEeeCCCcEEEEeCCCCceee
Q psy4578         692 QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF------NPYSEYILATGSADKTVALWDLRNLKLKL  765 (860)
Q Consensus       692 i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~------sp~g~~llasgs~Dg~I~IWDl~~~~~~~  765 (860)
                                     |++||+.++.  ..+..+.+|...|.+++|      +|++. .+++|+.||.|++||+++.....
T Consensus        92 ---------------i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~  153 (357)
T 3i2n_A           92 ---------------LHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPV  153 (357)
T ss_dssp             ---------------EEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCS
T ss_pred             ---------------EEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcc
Confidence                           9999999873  267788899999999955      67888 49999999999999999887446


Q ss_pred             EEeccCCC----ceEEEE----EcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578         766 HSFESHKD----EIFQVQ----WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  837 (860)
Q Consensus       766 ~~~~~h~~----~V~~l~----fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~  837 (860)
                      ..+..|.+    .+.+++    |+|++.. +++|+.||.|++||+++...               .....|...|.+++|
T Consensus       154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~---------------~~~~~~~~~v~~~~~  217 (357)
T 3i2n_A          154 ANMEPVQGENKRDCWTVAFGNAYNQEERV-VCAGYDNGDIKLFDLRNMAL---------------RWETNIKNGVCSLEF  217 (357)
T ss_dssp             EEECCCTTSCCCCEEEEEEECCCC-CCCE-EEEEETTSEEEEEETTTTEE---------------EEEEECSSCEEEEEE
T ss_pred             eeccccCCCCCCceEEEEEEeccCCCCCE-EEEEccCCeEEEEECccCce---------------eeecCCCCceEEEEc
Confidence            77766554    899998    7888884 89999999999999987332               223467889999999


Q ss_pred             cc---CCCeEEEEEeCCCeEee
Q psy4578         838 NP---NEPWVICSVSEDNIMQK  856 (860)
Q Consensus       838 sp---dg~~Llasgs~Dg~IrI  856 (860)
                      +|   ++.+ +++++.||.|++
T Consensus       218 ~~~~~~~~~-l~~~~~dg~i~i  238 (357)
T 3i2n_A          218 DRKDISMNK-LVATSLEGKFHV  238 (357)
T ss_dssp             SCSSSSCCE-EEEEESTTEEEE
T ss_pred             CCCCCCCCE-EEEECCCCeEEE
Confidence            99   8885 778899998876

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.86  E-value=2.2e-20  Score=220.69  Aligned_cols=219  Identities=15%  Similarity=0.224  Sum_probs=177.0

Q ss_pred             EEEeeccchh-----hhhhhhhcccc-eeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCC-----cccCeeeccCCCCCe
Q psy4578         603 VMYLENKTRA-----QICQLLDKLRL-LIDVAWHLL-HESLFGSVADDQKLMIWDTRSHN-----VSKPSHTVDAHTAEV  670 (860)
Q Consensus       603 il~l~n~~~~-----~l~~l~~~~~~-V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~-----~~~~~~~~~~h~~~V  670 (860)
                      .+.+|+....     ....+.+|.+. |++++|+|. ++.+|++|+.||.|++||+.++.     .......+..|...|
T Consensus        40 ~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v  119 (615)
T 1pgu_A           40 SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI  119 (615)
T ss_dssp             EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCE
T ss_pred             eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccE
Confidence            3455555544     45556678888 999999973 57899999999999999997531     124566777899999


Q ss_pred             eEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC
Q psy4578         671 NCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD  750 (860)
Q Consensus       671 ~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D  750 (860)
                      .+++|+|++++ +++++.+..           ..+.|.+||.  +   ..+..+.+|...|.+++|+|++.+++++|+.|
T Consensus       120 ~~~~~s~~~~~-l~~~~~~~~-----------~~~~v~~~d~--~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  182 (615)
T 1pgu_A          120 SDISWDFEGRR-LCVVGEGRD-----------NFGVFISWDS--G---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDD  182 (615)
T ss_dssp             EEEEECTTSSE-EEEEECCSS-----------CSEEEEETTT--C---CEEEECCSCSSCEEEEEECSSSSCEEEEEETT
T ss_pred             EEEEEeCCCCE-EEEeccCCC-----------CccEEEEEEC--C---CcceeeecCCccEEEEEECCCCCcEEEEEeCC
Confidence            99999999996 667766621           1223888883  2   56778889999999999999998779999999


Q ss_pred             CcEEEEeCCCCceeeEEeccCCC---ceEEEEEcCC-CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEe-
Q psy4578         751 KTVALWDLRNLKLKLHSFESHKD---EIFQVQWSPH-NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-  825 (860)
Q Consensus       751 g~I~IWDl~~~~~~~~~~~~h~~---~V~~l~fsp~-g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~-  825 (860)
                      |.|++||+.+... ...+.+|..   .|++++|+|+ ++ ++++++.||.|++||+.++.              .+..+ 
T Consensus       183 ~~v~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~--------------~~~~~~  246 (615)
T 1pgu_A          183 GSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGE--------------FLKYIE  246 (615)
T ss_dssp             TEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCC--------------EEEECC
T ss_pred             CcEEEEeCCCcce-eeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCC--------------EeEEec
Confidence            9999999998876 788889999   9999999999 87 48999999999999998743              34444 


Q ss_pred             c---CccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         826 G---GHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       826 ~---~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .   +|...|.+++|+ ++. .+++++.|+.|++
T Consensus       247 ~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~  278 (615)
T 1pgu_A          247 DDQEPVQGGIFALSWL-DSQ-KFATVGADATIRV  278 (615)
T ss_dssp             BTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEE
T ss_pred             ccccccCCceEEEEEc-CCC-EEEEEcCCCcEEE
Confidence            4   789999999999 888 5778999998886

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.86  E-value=1.4e-20  Score=242.14  Aligned_cols=232  Identities=24%  Similarity=0.396  Sum_probs=183.8

Q ss_pred             eeeeecceeecccceeEEEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc
Q psy4578         586 LNFFKQGYFKGTHHIEEVMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD  664 (860)
Q Consensus       586 ~~ll~~G~~~Gs~~l~~il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~  664 (860)
                      +.+...|.+..+......+.+|+....+ +..+.+|.+.|.+++|+| ++.++++|+.||.|++||+.++   +.+..+.
T Consensus       621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~  696 (1249)
T 3sfz_A          621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATG---KLVHTYD  696 (1249)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC---CEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCCC---ceEEEEc
Confidence            3333344443333333345566655544 444556788999999998 7889999999999999999984   5577888


Q ss_pred             CCCCCeeEEEEccCC-CeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcE
Q psy4578         665 AHTAEVNCLSFNPYS-EYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  743 (860)
Q Consensus       665 ~h~~~V~~l~~sp~g-~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~l  743 (860)
                      +|...|.+++|+|++ ..++++|+.||.               |++||+.++   .....+.+|.+.|++++|+|++. .
T Consensus       697 ~~~~~v~~~~~~~~~~~~~l~sg~~d~~---------------v~vwd~~~~---~~~~~~~~h~~~v~~~~~sp~~~-~  757 (1249)
T 3sfz_A          697 EHSEQVNCCHFTNKSNHLLLATGSNDFF---------------LKLWDLNQK---ECRNTMFGHTNSVNHCRFSPDDE-L  757 (1249)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEEETTSC---------------EEEEETTSS---SEEEEECCCSSCEEEEEECSSTT-E
T ss_pred             CCCCcEEEEEEecCCCceEEEEEeCCCe---------------EEEEECCCc---chhheecCCCCCEEEEEEecCCC-E
Confidence            999999999999953 346899999998               999999987   66778889999999999999999 4


Q ss_pred             EEEeeCCCcEEEEeCCCCceee------------------------------------------------------EEec
Q psy4578         744 LATGSADKTVALWDLRNLKLKL------------------------------------------------------HSFE  769 (860)
Q Consensus       744 lasgs~Dg~I~IWDl~~~~~~~------------------------------------------------------~~~~  769 (860)
                      +++|+.||.|++||++++....                                                      ....
T Consensus       758 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~  837 (1249)
T 3sfz_A          758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT  837 (1249)
T ss_dssp             EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence            9999999999999987654310                                                      0112


Q ss_pred             cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       770 ~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      +|...|.+++|+|+++. +++|+.||.|++||+.+              ...+....+|.+.|++++|+|+|.+ +++++
T Consensus       838 ~~~~~v~~~~~sp~~~~-l~~~~~dg~v~vwd~~~--------------~~~~~~~~~h~~~v~~v~~spdg~~-l~s~s  901 (1249)
T 3sfz_A          838 GHHSTIQYCDFSPYDHL-AVIALSQYCVELWNIDS--------------RLKVADCRGHLSWVHGVMFSPDGSS-FLTAS  901 (1249)
T ss_dssp             SSSSCCCEEEECSSTTE-EEEECSSSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSSE-EEEEE
T ss_pred             CCCCceEEEEEcCCCCE-EEEEeCCCeEEEEEcCC--------------CceeeecCCCccceEEEEECCCCCE-EEEEe
Confidence            57778888999998874 78888899999999876              3456677799999999999999995 77999


Q ss_pred             CCCeEee
Q psy4578         850 EDNIMQK  856 (860)
Q Consensus       850 ~Dg~IrI  856 (860)
                      .|+.+++
T Consensus       902 ~dg~v~v  908 (1249)
T 3sfz_A          902 DDQTIRV  908 (1249)
T ss_dssp             TTSCEEE
T ss_pred             CCCeEEE
Confidence            9999886

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.86  E-value=5.6e-20  Score=203.90  Aligned_cols=223  Identities=14%  Similarity=0.175  Sum_probs=163.4

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc-
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE-  700 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~-  700 (860)
                      ..+..+++.+.++.++++|+.|++|++||..++   +.+..+. +...|.++.|+++.   ++++ .|+.+.+|+.... 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~---~~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~  130 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK---QDVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPW  130 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTT---EEEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTC
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCC---cEEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCc
Confidence            358888888754555577888999999999885   3444554 56799999998753   3333 3778999988776 


Q ss_pred             ------------------------ccCCCcEEEEeCCCCCC------------CCC-eeeecCCCCCeEEEEEcCCCCcE
Q psy4578         701 ------------------------ENYDQKLMIWDTRSHNV------------SKP-SHTVDAHTAEVNCLSFNPYSEYI  743 (860)
Q Consensus       701 ------------------------~~~dg~I~iwDl~~~~~------------~~~-~~~~~~h~~~I~sl~~sp~g~~l  743 (860)
                                              +..+|.|++||+.++..            ..+ +..+.+|.+.|++++|+|+|. +
T Consensus       131 ~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~  209 (355)
T 3vu4_A          131 KRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-M  209 (355)
T ss_dssp             CBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-E
T ss_pred             eeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-E
Confidence                                    67899999999987531            012 677899999999999999998 5


Q ss_pred             EEEeeCCCc-EEEEeCCCCceeeEEec-c-CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccccc-----
Q psy4578         744 LATGSADKT-VALWDLRNLKLKLHSFE-S-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE-----  815 (860)
Q Consensus       744 lasgs~Dg~-I~IWDl~~~~~~~~~~~-~-h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~-----  815 (860)
                      |++|+.||+ |++||++++.. +..+. + |...|++++|+|+|++ |++|+.||+|++||+.............     
T Consensus       210 l~s~s~d~~~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~~~~~-l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~  287 (355)
T 3vu4_A          210 VATCSQDGTIIRVFKTEDGVL-VREFRRGLDRADVVDMKWSTDGSK-LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMK  287 (355)
T ss_dssp             EEEEETTCSEEEEEETTTCCE-EEEEECTTCCSCEEEEEECTTSCE-EEEEETTCEEEEEESSCCSCCCSEETTTTEECC
T ss_pred             EEEEeCCCCEEEEEECCCCcE-EEEEEcCCCCCcEEEEEECCCCCE-EEEEECCCEEEEEEccCCCCcccccccceeecc
Confidence            999999998 99999999887 67776 5 9999999999999985 8999999999999998753221110000     


Q ss_pred             --CCCC--ccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         816 --DGPP--ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       816 --~~~~--~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                        ....  ........+......++|+++|.+ +++++.||.+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~-l~~~~~dg~~~~  331 (355)
T 3vu4_A          288 YFQSEWSLCNFKLSVDKHVRGCKIAWISESSL-VVVWPHTRMIET  331 (355)
T ss_dssp             CCCCSSCSEEEECCCCTTCCCCEEEESSSSEE-EEEETTTTEEEE
T ss_pred             ccccccceeEEEeccCCCCCceEEEEeCCCCE-EEEEeCCCeEEE
Confidence              0000  001111122334567999999995 667888988764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.86  E-value=2.3e-20  Score=202.22  Aligned_cols=189  Identities=16%  Similarity=0.315  Sum_probs=150.9

Q ss_pred             hhhhcccceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCcc------cCeeeccCCCCCeeEEEEccC--CCeEEEEE
Q psy4578         616 QLLDKLRLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNVS------KPSHTVDAHTAEVNCLSFNPY--SEYILATG  686 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~~------~~~~~~~~h~~~V~~l~~sp~--g~~llasg  686 (860)
                      .+..|.+.|++++|+|. ++.+|++|+.||.|++||+.++...      .....+.+|...|.+++|+|+  +. .+++|
T Consensus        52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~  130 (351)
T 3f3f_A           52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACL  130 (351)
T ss_dssp             EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEE
T ss_pred             eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEe
Confidence            34467789999999985 5889999999999999999875321      346677889999999999998  77 58999


Q ss_pred             eCCCceeeeccccc-------------------------------------------ccCCCcEEEEeCCCCCCCCCeee
Q psy4578         687 SADKTQFEVEEEEE-------------------------------------------ENYDQKLMIWDTRSHNVSKPSHT  723 (860)
Q Consensus       687 s~Dg~i~~~~~~~~-------------------------------------------~~~dg~I~iwDl~~~~~~~~~~~  723 (860)
                      +.||.+.+|+....                                           +..++.+.+|+...+. ...+..
T Consensus       131 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~  209 (351)
T 3f3f_A          131 GNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-LHVAAK  209 (351)
T ss_dssp             ETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-EEEEEE
T ss_pred             cCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-eeeeee
Confidence            99999888875432                                           1234555555554431 133667


Q ss_pred             ecCCCCCeEEEEEcCCCC---cEEEEeeCCCcEEEEeCCCCc--------------------------------------
Q psy4578         724 VDAHTAEVNCLSFNPYSE---YILATGSADKTVALWDLRNLK--------------------------------------  762 (860)
Q Consensus       724 ~~~h~~~I~sl~~sp~g~---~llasgs~Dg~I~IWDl~~~~--------------------------------------  762 (860)
                      +.+|...|++++|+|++.   .++++|+.||.|++||++...                                      
T Consensus       210 ~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (351)
T 3f3f_A          210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE  289 (351)
T ss_dssp             CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------------
T ss_pred             cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeee
Confidence            788999999999999982   369999999999999998741                                      


Q ss_pred             -------eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578         763 -------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       763 -------~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~  807 (860)
                             ..+..+.+|...|++++|+|+++. |++|+.||.|++||+.+...
T Consensus       290 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          290 LQSNLQVELLSEHDDHNGEVWSVSWNLTGTI-LSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             -CCSEEEEEEEEECTTSSCEEEEEECSSSCC-EEEEETTSCEEEEEECTTSC
T ss_pred             ecccccccEEEEEecccccEEEEEEcCCCCE-EEEecCCCcEEEEecCcCcc
Confidence                   236667889999999999999985 89999999999999997543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.86  E-value=1.4e-20  Score=205.21  Aligned_cols=198  Identities=14%  Similarity=0.107  Sum_probs=163.9

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      .|.+.|++++|+| ++.+|++|+.||.|++|++.++..........+|...|++++|+|++...+++|+.||.       
T Consensus         9 ~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-------   80 (342)
T 1yfq_A            9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE-------   80 (342)
T ss_dssp             CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC-------
T ss_pred             CCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCe-------
Confidence            5678899999999 78899999999999999998764222345556899999999999998823889999998       


Q ss_pred             ccccCCCcEEEEeC-CCCCCCCCeeeecC--CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC---------CceeeE
Q psy4578         699 EEENYDQKLMIWDT-RSHNVSKPSHTVDA--HTAEVNCLSFNPYSEYILATGSADKTVALWDLRN---------LKLKLH  766 (860)
Q Consensus       699 ~~~~~dg~I~iwDl-~~~~~~~~~~~~~~--h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~---------~~~~~~  766 (860)
                              |++||+ .++    ....+.+  |...|.+++|+| +. .+++|+.||.|++||+++         ... +.
T Consensus        81 --------i~~wd~~~~~----~~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~  145 (342)
T 1yfq_A           81 --------ILKVDLIGSP----SFQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SN  145 (342)
T ss_dssp             --------EEEECSSSSS----SEEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESC-SS
T ss_pred             --------EEEEEeccCC----ceEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCe-ee
Confidence                    999999 764    3467778  999999999999 77 599999999999999987         543 44


Q ss_pred             EeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC-CCcccccccccCCCCccEEEecCccCceEEEEEcc-CCCeE
Q psy4578         767 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK-IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWV  844 (860)
Q Consensus       767 ~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~-~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp-dg~~L  844 (860)
                      .+. |...|.+++|+|++   +++++.||.|++||+++ ...            ........|...|.+++|+| ++. +
T Consensus       146 ~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~------------~~~~~~~~~~~~i~~i~~~~~~~~-~  208 (342)
T 1yfq_A          146 NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD------------NGTIEESGLKYQIRDVALLPKEQE-G  208 (342)
T ss_dssp             SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC------------CCEEEECSCSSCEEEEEECSGGGC-E
T ss_pred             EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc------------cceeeecCCCCceeEEEECCCCCC-E
Confidence            444 88999999999887   78999999999999987 432            12233446788999999999 998 5


Q ss_pred             EEEEeCCCeEee
Q psy4578         845 ICSVSEDNIMQK  856 (860)
Q Consensus       845 lasgs~Dg~IrI  856 (860)
                      +++++.||.+++
T Consensus       209 l~~~~~dg~i~i  220 (342)
T 1yfq_A          209 YACSSIDGRVAV  220 (342)
T ss_dssp             EEEEETTSEEEE
T ss_pred             EEEEecCCcEEE
Confidence            778999999986

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.2e-20  Score=216.91  Aligned_cols=192  Identities=8%  Similarity=0.148  Sum_probs=154.6

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCC-----CeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTA-----EVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~-----~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      .+...|.+++|+| ++..+|+++.||.|++||...     .+..+. |..     .|.+++|||+|++ +++|+.||+  
T Consensus        83 ~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~-LAsgs~DGt--  152 (588)
T 2j04_A           83 QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESS-IVVGNEDGE--  152 (588)
T ss_dssp             SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSC-EEEEETTSE--
T ss_pred             CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCE-EEEEcCCCE--
Confidence            4467899999999 899999999999999999543     445555 554     5999999999995 999999999  


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCC----Ceeee----cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee-
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSK----PSHTV----DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-  764 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~----~~~~~----~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~-  764 (860)
                                   |++||+.++....    .+.++    .+|...|.+++|+|+|   +++++.|++|++||+.+.... 
T Consensus       153 -------------VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~  216 (588)
T 2j04_A          153 -------------LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQP  216 (588)
T ss_dssp             -------------EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCC
T ss_pred             -------------EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcccc
Confidence                         9999998863211    24555    6788899999999998   678888999999999887741 


Q ss_pred             -eEEe-ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE--ccC
Q psy4578         765 -LHSF-ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW--NPN  840 (860)
Q Consensus       765 -~~~~-~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~--spd  840 (860)
                       ...+ .+|...|.+++|+  |. .+++++ +|.|++||+...              .......+|.+.|.+++|  +|+
T Consensus       217 ~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~--------------~~~~~~~gh~~~V~~va~~~s~d  278 (588)
T 2j04_A          217 VSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNY--------------SISSLKTGSLENFHIIPLNHEKE  278 (588)
T ss_dssp             CEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTT--------------EEEEEECSCCSCCCEEEETTCSS
T ss_pred             ceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCC--------------eEEEEEcCCCceEEEEEeeeCCC
Confidence             3455 4788999999999  54 477776 799999998872              222233379999999999  999


Q ss_pred             CCeEEEEEeCCCeEee
Q psy4578         841 EPWVICSVSEDNIMQK  856 (860)
Q Consensus       841 g~~Llasgs~Dg~IrI  856 (860)
                      +. .++++++||+ ++
T Consensus       279 ~~-~La~a~edG~-kl  292 (588)
T 2j04_A          279 ST-ILLMSNKTSY-KV  292 (588)
T ss_dssp             CE-EEEECSSCEE-EE
T ss_pred             CC-EEEEEcCCCC-EE
Confidence            97 5889998998 54

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.5e-20  Score=233.78  Aligned_cols=209  Identities=16%  Similarity=0.168  Sum_probs=163.4

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      .+|.+.|++++|+| ++.+||+|+.||.|+||+..+.   ..... ..|...|++++|+| |+ .+++++.|++      
T Consensus        14 ~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~---~~~~~-~~~~~~V~~l~fsp-g~-~L~S~s~D~~------   80 (902)
T 2oaj_A           14 YGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQV---EVVIK-LEDRSAIKEMRFVK-GI-YLVVINAKDT------   80 (902)
T ss_dssp             EECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTC---EEEEE-CSSCCCEEEEEEET-TT-EEEEEETTCE------
T ss_pred             cCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCc---EEEEE-cCCCCCEEEEEEcC-CC-EEEEEECcCe------
Confidence            36678999999999 7899999999999999998763   22222 35788999999999 77 5899999999      


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceee----------EE
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL----------HS  767 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~----------~~  767 (860)
                               |++||+.++   ..+..+. |...|++++|+|++.+ +++|+.||.|++||+++.....          ..
T Consensus        81 ---------v~lWd~~~~---~~~~~~~-~~~~V~~v~~sp~g~~-l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~  146 (902)
T 2oaj_A           81 ---------VYVLSLYSQ---KVLTTVF-VPGKITSIDTDASLDW-MLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFF  146 (902)
T ss_dssp             ---------EEEEETTTC---SEEEEEE-CSSCEEEEECCTTCSE-EEEEETTSCEEEEETTTTEEEEEEECCHHHHHTC
T ss_pred             ---------EEEEECCCC---cEEEEEc-CCCCEEEEEECCCCCE-EEEEcCCCcEEEEECCCCccccceeccccccccc
Confidence                     999999986   4555554 6789999999999995 9999999999999999876421          22


Q ss_pred             eccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccccc-----CCCCccEEEecCccCceEEEEEccCCC
Q psy4578         768 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE-----DGPPELLFIHGGHTAKISDFSWNPNEP  842 (860)
Q Consensus       768 ~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~-----~~~~~~i~~~~~h~~~I~~i~~spdg~  842 (860)
                      ..+|.+.|++++|+|++..++++|+.||.| +||+++......+....     .+... ......|...|++++|+|+|.
T Consensus       147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~h~~~V~~v~fspdg~  224 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFS-EKTNEKRTPKVIQSLYHPNSL  224 (902)
T ss_dssp             SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTC-CCTTSCBCCCEEEEEECTTSS
T ss_pred             cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccc-cccccccCCCeEEEEEcCCCC
Confidence            367899999999999764468999999999 99999865433222110     00000 011234568899999999999


Q ss_pred             eEEEEEeCCCeEee
Q psy4578         843 WVICSVSEDNIMQK  856 (860)
Q Consensus       843 ~Llasgs~Dg~IrI  856 (860)
                       .+++|+.|+.|++
T Consensus       225 -~lasgs~Dg~i~l  237 (902)
T 2oaj_A          225 -HIITIHEDNSLVF  237 (902)
T ss_dssp             -EEEEEETTCCEEE
T ss_pred             -EEEEEECCCeEEE
Confidence             5789999999886

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.85  E-value=3.4e-20  Score=238.56  Aligned_cols=214  Identities=29%  Similarity=0.478  Sum_probs=177.4

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      +.+|.+.|++++|+| ++.++++|+.||+|++||+.++   ..+..+.+|.+.|++++|+|++++ +++|+.||+     
T Consensus       611 ~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~-----  680 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFSSDDSY-IATCSADKK-----  680 (1249)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSE-EEEEETTSE-----
T ss_pred             EecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCC---CEEEEeccCCCCEEEEEEecCCCE-EEEEeCCCe-----
Confidence            446888999999998 7899999999999999999885   557778899999999999999985 899999998     


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCC-CcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCce
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYS-EYILATGSADKTVALWDLRNLKLKLHSFESHKDEI  775 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g-~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V  775 (860)
                                |++||+.++   ..+..+.+|...|.+++|+|++ ..++++|+.||.|++||++++.. ...+.+|.+.|
T Consensus       681 ----------v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v  746 (1249)
T 3sfz_A          681 ----------VKIWDSATG---KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSV  746 (1249)
T ss_dssp             ----------EEEEETTTC---CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCE
T ss_pred             ----------EEEEECCCC---ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCE
Confidence                      999999987   6778889999999999999953 23689999999999999999887 78888999999


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc-----------------------cCC---------------
Q psy4578         776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA-----------------------EDG---------------  817 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~-----------------------~~~---------------  817 (860)
                      ++++|+|+|+. +++|+.||.|++||+.+..........                       .++               
T Consensus       747 ~~~~~sp~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d  825 (1249)
T 3sfz_A          747 NHCRFSPDDEL-LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD  825 (1249)
T ss_dssp             EEEEECSSTTE-EEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEE
T ss_pred             EEEEEecCCCE-EEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEE
Confidence            99999999985 899999999999999875432221100                       000               


Q ss_pred             --CCc-cEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         818 --PPE-LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       818 --~~~-~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                        ... ......+|.+.|.+++|+|++. ++++++.|+.|++
T Consensus       826 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~v  866 (1249)
T 3sfz_A          826 IHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVEL  866 (1249)
T ss_dssp             TTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEE
T ss_pred             ecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEE
Confidence              011 1122237889999999999999 4778888988875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.85  E-value=1.6e-20  Score=209.28  Aligned_cols=209  Identities=15%  Similarity=0.168  Sum_probs=158.5

Q ss_pred             ccccceeeeeeecceee--cccceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc
Q psy4578         579 QEDLKLFLNFFKQGYFK--GTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV  656 (860)
Q Consensus       579 ~~D~~l~~~ll~~G~~~--Gs~~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~  656 (860)
                      .+++...+.+...|.+.  ++......+.+|+....+....+.|.+.|.+++|+| ++.++++++.| .+++|+..++..
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~  209 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSC  209 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCE
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcc
Confidence            34455555555555442  334445567788887777777778888999999999 78899988855 567777666432


Q ss_pred             ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCC-CCCeeeecCCCCCeEEEE
Q psy4578         657 SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLS  735 (860)
Q Consensus       657 ~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~-~~~~~~~~~h~~~I~sl~  735 (860)
                       .......+|...|.+++|+|++.. +++++.|+.           ....++.||+..... ......+.+|...|++++
T Consensus       210 -~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d~~-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~  276 (365)
T 4h5i_A          210 -IARKTDFDKNWSLSKINFIADDTV-LIAASLKKG-----------KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMD  276 (365)
T ss_dssp             -EEEECCCCTTEEEEEEEEEETTEE-EEEEEESSS-----------CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEE
T ss_pred             -eeeeecCCCCCCEEEEEEcCCCCE-EEEEecCCc-----------ceeEEeecccccceecceeeeeecCCCCCeEeEE
Confidence             122345678899999999999985 777776663           111277888876421 112346778999999999


Q ss_pred             EcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE-eccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578         736 FNPYSEYILATGSADKTVALWDLRNLKLKLHS-FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       736 ~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~-~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~  805 (860)
                      |+|+|.+ ||+|+.||+|+|||+++++. +.. +.+|...|++++|+|+|++ |+||+.|++|+|||+...
T Consensus       277 ~Spdg~~-lasgs~D~~V~iwd~~~~~~-~~~~~~gH~~~V~~v~fSpdg~~-laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          277 VDMKGEL-AVLASNDNSIALVKLKDLSM-SKIFKQAHSFAITEVTISPDSTY-VASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             ECTTSCE-EEEEETTSCEEEEETTTTEE-EEEETTSSSSCEEEEEECTTSCE-EEEEETTSEEEEEECCTT
T ss_pred             ECCCCCc-eEEEcCCCEEEEEECCCCcE-EEEecCcccCCEEEEEECCCCCE-EEEEeCCCeEEEEEcCCC
Confidence            9999994 99999999999999999887 555 5789999999999999985 899999999999999753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.85  E-value=7e-20  Score=209.59  Aligned_cols=195  Identities=25%  Similarity=0.425  Sum_probs=163.5

Q ss_pred             hhhcccce-eeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         617 LLDKLRLL-IDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       617 l~~~~~~V-~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      +.+|.+.| .++.++   ++++++|+.||.|++||+.++   +.+..+.+|.+.|++++|+|++  .+++|+.||+    
T Consensus       117 l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~----  184 (464)
T 3v7d_B          117 LRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRT----  184 (464)
T ss_dssp             EECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECSTT--EEEEEETTSC----
T ss_pred             EcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCC---cEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCC----
Confidence            34565664 555554   579999999999999999884   5677888999999999999977  5899999999    


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC--CCCcEEEEeeCCCcEEEEeCCCCcee---------
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP--YSEYILATGSADKTVALWDLRNLKLK---------  764 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp--~g~~llasgs~Dg~I~IWDl~~~~~~---------  764 (860)
                                 |++||+.++   ..+..+.+|...|.+++|++  ++. .+++|+.||.|++||+++....         
T Consensus       185 -----------i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~  249 (464)
T 3v7d_B          185 -----------VRVWDIKKG---CCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDY  249 (464)
T ss_dssp             -----------EEEEETTTT---EEEEEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCS
T ss_pred             -----------EEEEECCCC---cEEEEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCc
Confidence                       999999987   56778889999999999985  556 5999999999999999876531         


Q ss_pred             -------------eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCc
Q psy4578         765 -------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK  831 (860)
Q Consensus       765 -------------~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~  831 (860)
                                   ...+.+|...+.++  ++++. ++++|+.||.|++||+++              ...+..+.+|...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~--------------~~~~~~~~~~~~~  312 (464)
T 3v7d_B          250 PLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQ--------------MKCLYILSGHTDR  312 (464)
T ss_dssp             SEEESCGGGCTTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTT--------------TEEEEEECCCSSC
T ss_pred             ceEeeccCCCeEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCC--------------CcEEEEecCCCCC
Confidence                         45677888888887  56676 489999999999999987              3456677789999


Q ss_pred             eEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         832 ISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       832 I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |++++|+|++++ +++|+.||.|++
T Consensus       313 v~~~~~~~~~~~-l~sg~~dg~i~v  336 (464)
T 3v7d_B          313 IYSTIYDHERKR-CISASMDTTIRI  336 (464)
T ss_dssp             EEEEEEETTTTE-EEEEETTSCEEE
T ss_pred             EEEEEEcCCCCE-EEEEeCCCcEEE
Confidence            999999999995 779999999886

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.1e-20  Score=214.46  Aligned_cols=209  Identities=13%  Similarity=0.206  Sum_probs=157.3

Q ss_pred             ccceeeeE--eeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC--CCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         621 LRLLIDVA--WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA--HTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       621 ~~~V~~v~--~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~--h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      ...+.++.  +++ ++.++++|+.||.|++||+.++   ..+..+.+  |.+.|++++|+|++.. +++|+.||.     
T Consensus       168 ~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~-----  237 (437)
T 3gre_A          168 NEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTL---ERLQIIENSPRHGAVSSICIDEECCV-LILGTTRGI-----  237 (437)
T ss_dssp             CCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTC---CEEEEEECCGGGCCEEEEEECTTSCE-EEEEETTSC-----
T ss_pred             ccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC---eeeEEEccCCCCCceEEEEECCCCCE-EEEEcCCCe-----
Confidence            34555665  334 6889999999999999999884   45666666  8899999999999884 899999999     


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeec-CCCCCeEEEEEcC----CCCcEEEEeeCCCcEEEEeCCCCceeeEEecc-
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNP----YSEYILATGSADKTVALWDLRNLKLKLHSFES-  770 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~-~h~~~I~sl~~sp----~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~-  770 (860)
                                |++||++++   ..+..+. .|...|.+++|+|    ++. ++++|+.||.|++||++++.. +..+.+ 
T Consensus       238 ----------i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~  302 (437)
T 3gre_A          238 ----------IDIWDIRFN---VLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKGHC-QYAFINS  302 (437)
T ss_dssp             ----------EEEEETTTT---EEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTTTEE-EEEEESS
T ss_pred             ----------EEEEEcCCc---cEEEEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCCcE-EEEEEcC
Confidence                      999999986   5556654 7888999997765    455 599999999999999998875 444443 


Q ss_pred             -------------------------CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC---------
Q psy4578         771 -------------------------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED---------  816 (860)
Q Consensus       771 -------------------------h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~---------  816 (860)
                                               |...|++++|+ +++ +|++|+.||.|++||+.++...........         
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  380 (437)
T 3gre_A          303 DEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQ  380 (437)
T ss_dssp             SSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEE
T ss_pred             CCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECCCcccceEEecccccCceEEEEE
Confidence                                     55668889998 665 589999999999999998776544432110         


Q ss_pred             --------------CCCccEEEecCccCceEEEEEccC-CCeEEEEEeCCCeEee
Q psy4578         817 --------------GPPELLFIHGGHTAKISDFSWNPN-EPWVICSVSEDNIMQK  856 (860)
Q Consensus       817 --------------~~~~~i~~~~~h~~~I~~i~~spd-g~~Llasgs~Dg~IrI  856 (860)
                                    ...........|.+.|++++|+++ +..++++|+.||.|+|
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~i  435 (437)
T 3gre_A          381 VTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGI  435 (437)
T ss_dssp             EETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEE
T ss_pred             eecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEE
Confidence                          000111223349999999999998 3447999999999987

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.85  E-value=5.6e-20  Score=199.26  Aligned_cols=193  Identities=10%  Similarity=0.102  Sum_probs=139.7

Q ss_pred             ceeeeEeeccC----CcEEEEEe--------------------CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc-
Q psy4578         623 LLIDVAWHLLH----ESLFGSVA--------------------DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP-  677 (860)
Q Consensus       623 ~V~~v~~sp~~----~~~lasgs--------------------~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp-  677 (860)
                      .|.+++++| +    +..+++++                    .|+.|++|++...  ++.+..+.+|...++.++|++ 
T Consensus       113 ~v~sla~sp-d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d--G~~~~s~~~~~~~v~~l~fs~~  189 (356)
T 2w18_A          113 EIRALFCSS-DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED--GGGKENQFLMPPEETILTFAEV  189 (356)
T ss_dssp             EEEEECC-------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT--SCEEEEEEECCCSSCEEEEEEE
T ss_pred             ceEEEEECC-CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC--CceeeeeccCCCceeeEEeecc
Confidence            567777777 4    45555544                    2788888888442  344556667888888888888 


Q ss_pred             --CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCC---CCeEEEEEcCCCCcE---------
Q psy4578         678 --YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHT---AEVNCLSFNPYSEYI---------  743 (860)
Q Consensus       678 --~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~---~~I~sl~~sp~g~~l---------  743 (860)
                        ++. ++++|+.|++               |++||+.++   +.+.++.+|.   ..+.+++|+|+|..+         
T Consensus       190 ~g~~~-~LaSgS~D~T---------------IkIWDl~TG---k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~  250 (356)
T 2w18_A          190 QGMQE-ALLGTTIMNN---------------IVIWNLKTG---QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK  250 (356)
T ss_dssp             ETSTT-EEEEEETTSE---------------EEEEETTTC---CEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred             CCCCc-eEEEecCCCc---------------EEEEECCCC---cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence              556 5899999998               999999998   6677776654   467788999999853         


Q ss_pred             --EEEeeCCCcEEEEeCCCCceeeEEe-----ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC
Q psy4578         744 --LATGSADKTVALWDLRNLKLKLHSF-----ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED  816 (860)
Q Consensus       744 --lasgs~Dg~I~IWDl~~~~~~~~~~-----~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~  816 (860)
                        +++|+.|++|++||..++.. +..+     .+|...+.+..++  +. ++++|+.||+|++||+.+            
T Consensus       251 w~laSGs~D~tIklWd~~tgk~-l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~t------------  314 (356)
T 2w18_A          251 ESESLRSPVFQLIVINPKTTLS-VGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLL------------  314 (356)
T ss_dssp             -------CCEEEEEEETTTTEE-EEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTT------------
T ss_pred             ceeeccCCCcEEEEEECCCCEE-EEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCC------------
Confidence              36788999999999998876 4433     3676666555554  55 589999999999999998            


Q ss_pred             CCCccEEEecCccCceE-EEEEccCCCeEEEEEeCCCeEee
Q psy4578         817 GPPELLFIHGGHTAKIS-DFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       817 ~~~~~i~~~~~h~~~I~-~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                        .+++..+.+|...+. .++|+|||++ +++|+.|++|+|
T Consensus       315 --Gk~l~tL~gH~~~vvs~vafSPDG~~-LaSGS~D~TIkl  352 (356)
T 2w18_A          315 --GQCTALLPPVSDQHWSFVKWSGTDSH-LLAGQKDGNIFV  352 (356)
T ss_dssp             --CSEEEEECCC--CCCCEEEECSSSSE-EEEECTTSCEEE
T ss_pred             --CcEEEEecCCCCCeEEEEEECCCCCE-EEEEECCCcEEE
Confidence              345667778887655 5899999995 779999999997

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=5.1e-20  Score=229.01  Aligned_cols=224  Identities=13%  Similarity=0.194  Sum_probs=165.2

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      .+.+|+....+......|...|.+++|+|  +.+|++++.|++|++||+.++   +.+..+. |.+.|++++|+|++.+ 
T Consensus        40 ~I~lw~~~~~~~~~~~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~---~~~~~~~-~~~~V~~v~~sp~g~~-  112 (902)
T 2oaj_A           40 EVHIYGQQQVEVVIKLEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQ---KVLTTVF-VPGKITSIDTDASLDW-  112 (902)
T ss_dssp             EEEEECSTTCEEEEECSSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTC---SEEEEEE-CSSCEEEEECCTTCSE-
T ss_pred             EEEEEeCCCcEEEEEcCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCC---cEEEEEc-CCCCEEEEEECCCCCE-
Confidence            45667766655555556778899999998  559999999999999999885   3344553 6689999999999995 


Q ss_pred             EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCC-e-------eeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEE
Q psy4578         683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKP-S-------HTVDAHTAEVNCLSFNPYSEYILATGSADKTVA  754 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~-~-------~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~  754 (860)
                      +++|+.||+               |++||+.++..... +       ....+|.+.|++++|+|++..++++|+.||.| 
T Consensus       113 l~sgs~dg~---------------V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-  176 (902)
T 2oaj_A          113 MLIGLQNGS---------------MIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-  176 (902)
T ss_dssp             EEEEETTSC---------------EEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred             EEEEcCCCc---------------EEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence            899999999               99999987532100 0       23467999999999999765469999999999 


Q ss_pred             EEeCCCCceeeEEeccC------------------CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc--cccc
Q psy4578         755 LWDLRNLKLKLHSFESH------------------KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS--TEDA  814 (860)
Q Consensus       755 IWDl~~~~~~~~~~~~h------------------~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~--~~~~  814 (860)
                      +||+++... ...+..|                  ...|++++|+|+|.+ |++|+.||+|++||+++++....  ....
T Consensus       177 lWd~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~-lasgs~Dg~i~lWd~~~g~~~~~r~l~~~  254 (902)
T 2oaj_A          177 TYSLVENEI-KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH-IITIHEDNSLVFWDANSGHMIMARTVFET  254 (902)
T ss_dssp             EEETTTTEE-EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE-EEEEETTCCEEEEETTTCCEEEEECSSCS
T ss_pred             EEECCCCce-EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCcEEEEEeeccc
Confidence            999999876 6666554                  578999999999985 89999999999999988654321  1000


Q ss_pred             c-CCCC-ccEEEecCccCceEEEEEc----cCCCeEEEEEeCC
Q psy4578         815 E-DGPP-ELLFIHGGHTAKISDFSWN----PNEPWVICSVSED  851 (860)
Q Consensus       815 ~-~~~~-~~i~~~~~h~~~I~~i~~s----pdg~~Llasgs~D  851 (860)
                      . .... ........|...|++++|+    |++..++++|+.|
T Consensus       255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             ccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            0 0000 0000000245689999995    4555678888776

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.85  E-value=1.3e-19  Score=206.28  Aligned_cols=205  Identities=20%  Similarity=0.371  Sum_probs=170.3

Q ss_pred             EEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         604 MYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       604 l~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      +.+|+....+. ..+.+|.+.|.+++|   ++.++++|+.||.|++||+.++   ..+..+.+|...|.+++|++  . .
T Consensus       155 i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~--~-~  225 (435)
T 1p22_A          155 IKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTG---EMLNTLIHHCEAVLHLRFNN--G-M  225 (435)
T ss_dssp             EEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSC---CEEEEECCCCSCEEEEECCT--T-E
T ss_pred             EEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCC---cEEEEEcCCCCcEEEEEEcC--C-E
Confidence            44555544443 334467789999999   4689999999999999999985   55777889999999999974  3 5


Q ss_pred             EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc
Q psy4578         683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK  762 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~  762 (860)
                      +++|+.||.               |++||+.++........+.+|...|.+++|  ++. .+++|+.||.|++||++++.
T Consensus       226 l~s~s~dg~---------------i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~i~vwd~~~~~  287 (435)
T 1p22_A          226 MVTCSKDRS---------------IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSASGDRTIKVWNTSTCE  287 (435)
T ss_dssp             EEEEETTSC---------------EEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-EEEEEETTSEEEEEETTTCC
T ss_pred             EEEeeCCCc---------------EEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-EEEEEeCCCeEEEEECCcCc
Confidence            899999999               999999987543334677899999999999  566 59999999999999999988


Q ss_pred             eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578         763 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  842 (860)
Q Consensus       763 ~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~  842 (860)
                      . +..+.+|...|.+++|+  +. ++++|+.||.|++||++++              .++..+.+|...|.+++|  ++.
T Consensus       288 ~-~~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~~--------------~~~~~~~~h~~~v~~~~~--~~~  347 (435)
T 1p22_A          288 F-VRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECG--------------ACLRVLEGHEELVRCIRF--DNK  347 (435)
T ss_dssp             E-EEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTC--------------CEEEEECCCSSCEEEEEC--CSS
T ss_pred             E-EEEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCCC--------------CEEEEEeCCcCcEEEEEe--cCC
Confidence            7 88889999999999995  44 5899999999999999873              446677789999999999  666


Q ss_pred             eEEEEEeCCCeEee
Q psy4578         843 WVICSVSEDNIMQK  856 (860)
Q Consensus       843 ~Llasgs~Dg~IrI  856 (860)
                       .+++|+.||.|++
T Consensus       348 -~l~sg~~dg~i~v  360 (435)
T 1p22_A          348 -RIVSGAYDGKIKV  360 (435)
T ss_dssp             -EEEEEETTSCEEE
T ss_pred             -EEEEEeCCCcEEE
Confidence             5889999999986

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.84  E-value=9.7e-20  Score=202.01  Aligned_cols=211  Identities=10%  Similarity=0.107  Sum_probs=154.6

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      ....|.+.|++++|+| ++.+|++|+.|| +++|++.++   ......  +...+..+++.++++.++++|+.|+++.+|
T Consensus        14 ~~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPV---AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             -----CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTE---EEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred             ccccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCc---ceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence            4456778999999998 788999988775 789998763   222222  223588899999888777888899998888


Q ss_pred             ccccc-----------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEE-eeCCC
Q psy4578         696 EEEEE-----------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT-GSADK  751 (860)
Q Consensus       696 ~~~~~-----------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llas-gs~Dg  751 (860)
                      +....                       ...++.|++||+.+..  +.+..+..   ....+++++  ..++++ |+.||
T Consensus        87 d~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g  159 (355)
T 3vu4_A           87 DDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPW--KRITDDIR---FGGVCEFSN--GLLVYSNEFNLG  159 (355)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTC--CBSSCCEE---EEEEEEEET--TEEEEEESSCTT
T ss_pred             ECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCc--eeeEEecc---CCceEEEEc--cEEEEeCCCcCc
Confidence            76543                       1236778889888751  12222222   334455666  333333 78999


Q ss_pred             cEEEEeCCCCc--------------ee-eEEeccCCCceEEEEEcCCCCCEEEEEECCCc-EEEEECCCCCccccccccc
Q psy4578         752 TVALWDLRNLK--------------LK-LHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKIGEEQSTEDAE  815 (860)
Q Consensus       752 ~I~IWDl~~~~--------------~~-~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~-I~iWdl~~~~~~~~~~~~~  815 (860)
                      .|++||++++.              .+ +..+.+|...|++++|+|+|.+ |++|+.||+ |++||++++.         
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~-l~s~s~d~~~v~iwd~~~~~---------  229 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM-VATCSQDGTIIRVFKTEDGV---------  229 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE-EEEEETTCSEEEEEETTTCC---------
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE-EEEEeCCCCEEEEEECCCCc---------
Confidence            99999999765              11 5778899999999999999984 999999998 9999998743         


Q ss_pred             CCCCccEEEec-C-ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         816 DGPPELLFIHG-G-HTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       816 ~~~~~~i~~~~-~-h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                           ++..+. + |.+.|++++|+|+|++ +++++.|+.|+|
T Consensus       230 -----~~~~~~~g~h~~~v~~~~~s~~~~~-l~s~s~d~~v~i  266 (355)
T 3vu4_A          230 -----LVREFRRGLDRADVVDMKWSTDGSK-LAVVSDKWTLHV  266 (355)
T ss_dssp             -----EEEEEECTTCCSCEEEEEECTTSCE-EEEEETTCEEEE
T ss_pred             -----EEEEEEcCCCCCcEEEEEECCCCCE-EEEEECCCEEEE
Confidence                 345554 4 8999999999999994 779999999987

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.84  E-value=2.9e-19  Score=202.50  Aligned_cols=196  Identities=21%  Similarity=0.423  Sum_probs=164.8

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY  703 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~  703 (860)
                      ++.++|++  +++|++|. |++|+|||..+++.. ....+.+|...|++++|+|+|++ +++|+.||+            
T Consensus       108 ~~~l~wS~--~n~lAvgl-d~tV~lWd~~tg~~~-~~~~~~~~~~~V~sv~fspdg~~-lasgs~Dg~------------  170 (420)
T 4gga_A          108 LNLVDWSS--GNVLAVAL-DNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNY-LAVGTSSAE------------  170 (420)
T ss_dssp             CBCEEECT--TSEEEEEE-TTEEEEEETTTCCEE-EEEECCSTTCCEEEEEECTTSSE-EEEEETTSC------------
T ss_pred             ceeEEECC--CCEEEEEe-CCEEEEEECCCCCEE-EEEEecCCCCcEEEEEECCCCCE-EEEEECCCe------------
Confidence            56899996  45777775 899999999986432 22345678889999999999995 899999999            


Q ss_pred             CCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCC
Q psy4578         704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH  783 (860)
Q Consensus       704 dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~  783 (860)
                         |++||+.++   +.+..+.+|...+.+++|++  . ++++|+.|+.+++||.+.....+..+.+|...+..+.|+|+
T Consensus       171 ---v~iWd~~~~---~~~~~~~~h~~~v~~~s~~~--~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~  241 (420)
T 4gga_A          171 ---VQLWDVQQQ---KRLRNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD  241 (420)
T ss_dssp             ---EEEEETTTT---EEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred             ---EEEEEcCCC---cEEEEEeCCCCceEEEeeCC--C-EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCC
Confidence               999999987   67788899999999998864  4 69999999999999999877778889999999999999999


Q ss_pred             CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEE--EeCCCeEee
Q psy4578         784 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS--VSEDNIMQK  856 (860)
Q Consensus       784 g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llas--gs~Dg~IrI  856 (860)
                      |.. +++++.||.+++|+..+....          ...+.....|.+.|.+++|+|++..++++  |+.|+.|++
T Consensus       242 g~~-l~s~~~D~~v~i~~~~~~~~~----------~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i  305 (420)
T 4gga_A          242 GRH-LASGGNDNLVNVWPSAPGEGG----------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI  305 (420)
T ss_dssp             SSE-EEEEETTSCEEEEESSCCSSC----------SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred             CCe-eeeeeccccceEEeecccccc----------ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence            985 899999999999999875432          23345667899999999999988877765  457999886

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.84  E-value=2.5e-19  Score=199.82  Aligned_cols=229  Identities=11%  Similarity=0.081  Sum_probs=177.2

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      .+.+|+....+....+.++..+.+++|+|++..++++++.|+.|++||..++   +....+..+. .+.+++|+|+++++
T Consensus        13 ~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~~~~~~~~~-~v~~~~~spdg~~l   88 (391)
T 1l0q_A           13 NISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-SPQGVAVSPDGKQV   88 (391)
T ss_dssp             EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSSEE
T ss_pred             EEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC---eEEEEEECCC-CccceEECCCCCEE
Confidence            4666777777777677777789999999954445678889999999999875   3344544443 89999999999987


Q ss_pred             EEEEeCCCceeeeccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEE
Q psy4578         683 LATGSADKTQFEVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS  735 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~  735 (860)
                      +++++.++.+.+|+....                           +..++.|++||+.++   +.+..+..| ..+.+++
T Consensus        89 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~-~~~~~~~  164 (391)
T 1l0q_A           89 YVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK---AVINTVSVG-RSPKGIA  164 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECC-SSEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEecC-CCcceEE
Confidence            788888899999987643                           134788999999876   444555544 5679999


Q ss_pred             EcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE--CCCcEEEEECCCCCccccccc
Q psy4578         736 FNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTED  813 (860)
Q Consensus       736 ~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs--~Dg~I~iWdl~~~~~~~~~~~  813 (860)
                      |+|++.+++++++.|+.|++||++++.. ...+. +...+.+++|+|+|+++++++.  .++.|++||+.+..       
T Consensus       165 ~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~-------  235 (391)
T 1l0q_A          165 VTPDGTKVYVANFDSMSISVIDTVTNSV-IDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-------  235 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-------
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCeE-EEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe-------
Confidence            9999998668889999999999998875 44444 5678999999999987444443  78999999998743       


Q ss_pred             ccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         814 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       814 ~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                             .+.....| ..+.+++|+|+|++++++++.|+.|++
T Consensus       236 -------~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v  270 (391)
T 1l0q_A          236 -------ITARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSV  270 (391)
T ss_dssp             -------EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             -------EEEEEecC-CCccEEEEccCCCEEEEEcCCCCEEEE
Confidence                   23333344 357899999999988889999998886

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.84  E-value=4.4e-19  Score=202.21  Aligned_cols=222  Identities=20%  Similarity=0.346  Sum_probs=176.7

Q ss_pred             EEEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .+.+|+....+. ..+..|...|.+++|+   +..+++|+.||.|++||+.++   +.+..+.+|...|.+++|  ++. 
T Consensus       180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~--~~~-  250 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETG---QCLHVLMGHVAAVRCVQY--DGR-  250 (445)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSC---CEEEEEECCSSCEEEEEE--CSS-
T ss_pred             eEEEEECCcCcEEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCC---cEEEEEcCCcccEEEEEE--CCC-
Confidence            355566554443 3445677889999996   467999999999999999884   556777889999999999  566 


Q ss_pred             EEEEEeCCCceeeeccccc-------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578         682 ILATGSADKTQFEVEEEEE-------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  736 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~-------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~  736 (860)
                      .+++|+.||.+.+|+....                         ++.||.|++||++++   ..+..+.+|...+.++.+
T Consensus       251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~  327 (445)
T 2ovr_B          251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMEL  327 (445)
T ss_dssp             CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEE
Confidence            4899999999999986543                         245889999999987   667788899999999988


Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc---CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccc
Q psy4578         737 NPYSEYILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED  813 (860)
Q Consensus       737 sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~---h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~  813 (860)
                      +  +. .+++|+.||.|++||++++.. +..+.+   |...|.+++|+  ++ ++++|+.||.|++||+.+++.......
T Consensus       328 ~--~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~  400 (445)
T 2ovr_B          328 K--DN-ILVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFN--KN-FVITSSDDGTVKLWDLKTGEFIRNLVT  400 (445)
T ss_dssp             E--TT-EEEEEETTSCEEEEETTTCCE-EEEECSTTSCSSCEEEEEEC--SS-EEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred             e--CC-EEEEEeCCCeEEEEECCCCcE-EEEEccCCCCCCCEEEEEEC--CC-EEEEEeCCCeEEEEECCCCceeeeeec
Confidence            5  44 599999999999999998886 677765   88899999996  44 589999999999999998543221100


Q ss_pred             ccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         814 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       814 ~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                               ....+|.+.|++++|+|++. ++++|+.||.
T Consensus       401 ---------~~~~~~~~~v~~~~~s~~~~-~la~~~~dg~  430 (445)
T 2ovr_B          401 ---------LESGGSGGVVWRIRASNTKL-VCAVGSRNGT  430 (445)
T ss_dssp             ---------CTTGGGTCEEEEEEECSSEE-EEEEECSSSS
T ss_pred             ---------cccCCCCceEEEEEecCCEE-EEEEcccCCC
Confidence                     01146888999999999998 5889999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.83  E-value=3.7e-19  Score=203.53  Aligned_cols=211  Identities=11%  Similarity=0.071  Sum_probs=162.8

Q ss_pred             EEEEeeccc--hhhhhhhh---hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCccc-CeeeccCCCCCeeEEEE
Q psy4578         602 EVMYLENKT--RAQICQLL---DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSK-PSHTVDAHTAEVNCLSF  675 (860)
Q Consensus       602 ~il~l~n~~--~~~l~~l~---~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~-~~~~~~~h~~~V~~l~~  675 (860)
                      ..+.+|+..  .......+   .+...|++++|+| ++.+|++|+.||.|++|++.++.... ....+.+|...|++++|
T Consensus       125 g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  203 (450)
T 2vdu_B          125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHL  203 (450)
T ss_dssp             TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEE
T ss_pred             CeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEE
Confidence            345555555  44444444   4457899999998 78899999999999999998765433 44467789999999999


Q ss_pred             ccC---CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeee-ecCCCCCeEEEEEcCCCCcEEEEeeCCC
Q psy4578         676 NPY---SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT-VDAHTAEVNCLSFNPYSEYILATGSADK  751 (860)
Q Consensus       676 sp~---g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~-~~~h~~~I~sl~~sp~g~~llasgs~Dg  751 (860)
                      +|+   +. .+++|+.|+.               |++||+.++   ..+.. +.+|...|.+++|+ ++. +|++|+.||
T Consensus       204 sp~~~~~~-~l~s~~~d~~---------------i~vwd~~~~---~~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~  262 (450)
T 2vdu_B          204 IKDSDGHQ-FIITSDRDEH---------------IKISHYPQC---FIVDKWLFGHKHFVSSICCG-KDY-LLLSAGGDD  262 (450)
T ss_dssp             EECTTSCE-EEEEEETTSC---------------EEEEEESCT---TCEEEECCCCSSCEEEEEEC-STT-EEEEEESSS
T ss_pred             cCCCCCCc-EEEEEcCCCc---------------EEEEECCCC---ceeeeeecCCCCceEEEEEC-CCC-EEEEEeCCC
Confidence            999   76 5899999998               999999876   44555 56899999999999 888 499999999


Q ss_pred             cEEEEeCCCCceeeEEec-------------------------cCCCceEEEEEcCCCCCEEEEEE-CCCcEEEEEC--C
Q psy4578         752 TVALWDLRNLKLKLHSFE-------------------------SHKDEIFQVQWSPHNETILASSG-TDRRLHVWDL--S  803 (860)
Q Consensus       752 ~I~IWDl~~~~~~~~~~~-------------------------~h~~~V~~l~fsp~g~~lL~tgs-~Dg~I~iWdl--~  803 (860)
                      .|++||++++.. +..+.                         .....|.+++|+|++++ +++++ .|+.|++|++  .
T Consensus       263 ~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~~d~~i~iw~~~~~  340 (450)
T 2vdu_B          263 KIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF-VAFFVEATKCIIILEMSEK  340 (450)
T ss_dssp             EEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE-EEEEETTCSEEEEEEECSS
T ss_pred             eEEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE-EEEEECCCCeEEEEEeccC
Confidence            999999999876 55554                         23457999999999986 66666 8999999999  3


Q ss_pred             CCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         804 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      ....           ...+..+.+| +.|.+++|+|++ .++++++
T Consensus       341 ~~~~-----------l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~  373 (450)
T 2vdu_B          341 QKGD-----------LALKQIITFP-YNVISLSAHNDE-FQVTLDN  373 (450)
T ss_dssp             STTC-----------EEEEEEEECS-SCEEEEEEETTE-EEEEECC
T ss_pred             CCCc-----------eeeccEeccC-CceEEEEecCCc-EEEEEec
Confidence            3111           1345556666 889999999954 3444444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.83  E-value=1.3e-19  Score=214.09  Aligned_cols=201  Identities=12%  Similarity=0.207  Sum_probs=167.8

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc-cCeeeccCCCCC-eeEEEEcc--CCCeEEEEEeCCCceee
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS-KPSHTVDAHTAE-VNCLSFNP--YSEYILATGSADKTQFE  694 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~-~~~~~~~~h~~~-V~~l~~sp--~g~~llasgs~Dg~i~~  694 (860)
                      .+.+.|.+++|+| +++++++++ ++.|++||+.++... .....+.+|... |++++|+|  ++++ +++|+.||.   
T Consensus        16 ~~~~~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~-l~s~~~dg~---   89 (615)
T 1pgu_A           16 TQRNFTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY-LCSGDESGK---   89 (615)
T ss_dssp             CCTTCCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE-EEEEETTSE---
T ss_pred             CccCceeEEEECC-CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE-EEEecCCCE---
Confidence            4568899999999 788888888 789999999874111 567788899999 99999999  9985 899999998   


Q ss_pred             ecccccccCCCcEEEEeCCCCC-----CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC----CcEEEEeCCCCceee
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHN-----VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD----KTVALWDLRNLKLKL  765 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~-----~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D----g~I~IWDl~~~~~~~  765 (860)
                                  |++||+.++.     .......+..|...|.+++|+|++.+ +++++.+    +.|++||  .+.. +
T Consensus        90 ------------v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~v~~~d--~~~~-~  153 (615)
T 1pgu_A           90 ------------VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR-LCVVGEGRDNFGVFISWD--SGNS-L  153 (615)
T ss_dssp             ------------EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE-EEEEECCSSCSEEEEETT--TCCE-E
T ss_pred             ------------EEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCE-EEEeccCCCCccEEEEEE--CCCc-c
Confidence                        9999996430     11456677889999999999999995 7788777    7899998  3343 7


Q ss_pred             EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccC---ceEEEEEccC-C
Q psy4578         766 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA---KISDFSWNPN-E  841 (860)
Q Consensus       766 ~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~---~I~~i~~spd-g  841 (860)
                      ..+.+|...|.+++|+|+++.++++++.||.|++||+.+              ...+..+.+|..   .|++++|+|+ +
T Consensus       154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (615)
T 1pgu_A          154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP--------------FKFSASDRTHHKQGSFVRDVEFSPDSG  219 (615)
T ss_dssp             EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT--------------BEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred             eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC--------------cceeeeecccCCCCceEEEEEECCCCC
Confidence            788899999999999999987799999999999999876              344566778888   9999999999 8


Q ss_pred             CeEEEEEeCCCeEee
Q psy4578         842 PWVICSVSEDNIMQK  856 (860)
Q Consensus       842 ~~Llasgs~Dg~IrI  856 (860)
                      + ++++++.|+.|++
T Consensus       220 ~-~l~~~~~dg~i~v  233 (615)
T 1pgu_A          220 E-FVITVGSDRKISC  233 (615)
T ss_dssp             C-EEEEEETTCCEEE
T ss_pred             C-EEEEEeCCCeEEE
Confidence            8 5778888998876

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=6.6e-20  Score=201.82  Aligned_cols=192  Identities=13%  Similarity=0.111  Sum_probs=148.7

Q ss_pred             EeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578         628 AWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL  707 (860)
Q Consensus       628 ~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I  707 (860)
                      .+.+ ++.++++|+.||.|++||+.+++   .+..+.  ...|.++.|+|+    +++|+.|+++.+|.....      +
T Consensus        43 ~~~~-d~~~l~sg~~Dg~v~iwd~~~~~---~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~------~  106 (343)
T 3lrv_A           43 SMYY-DKWVCMCRCEDGALHFTQLKDSK---TITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQ------I  106 (343)
T ss_dssp             SSSE-EEEEEEEEEETTEEEEEEESSSS---CEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTE------E
T ss_pred             hhcC-CCCEEEEECCCCcEEEEECCCCc---EEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCc------e
Confidence            3443 67899999999999999999853   344433  467888889886    899999999777765543      6


Q ss_pred             EEEeCCCCCCCCCeeee-cCCCCCeEEEEEcC--CCCcEEEEeeCCCcEEEEeCCCCceeeEEe-ccCCCceEEEEEcCC
Q psy4578         708 MIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNP--YSEYILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPH  783 (860)
Q Consensus       708 ~iwDl~~~~~~~~~~~~-~~h~~~I~sl~~sp--~g~~llasgs~Dg~I~IWDl~~~~~~~~~~-~~h~~~V~~l~fsp~  783 (860)
                      .+||+.++   ..+..+ .+|...|.+++|+|  ++.+ +++|+.||+|++||++++.. .... ..|...+++++|+|+
T Consensus       107 ~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pd  181 (343)
T 3lrv_A          107 TILDSKTN---KVLREIEVDSANEIIYMYGHNEVNTEY-FIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKD  181 (343)
T ss_dssp             EEEETTTC---CEEEEEECCCSSCEEEEECCC---CCE-EEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTT
T ss_pred             EEeecCCc---ceeEEeecCCCCCEEEEEcCCCCCCCE-EEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCC
Confidence            77777765   323333 36778999999999  9984 99999999999999999887 4444 345668999999999


Q ss_pred             CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecC-ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         784 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG-HTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       784 g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~-h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |. ++++|+.||.|++||+++....             ...+.+ |.+.|++++|+|+|.+ ++++++| .|++
T Consensus       182 g~-~lasg~~dg~i~iwd~~~~~~~-------------~~~~~~~h~~~v~~l~fs~~g~~-l~s~~~~-~v~i  239 (343)
T 3lrv_A          182 SL-LLALYSPDGILDVYNLSSPDQA-------------SSRFPVDEEAKIKEVKFADNGYW-MVVECDQ-TVVC  239 (343)
T ss_dssp             SC-EEEEECTTSCEEEEESSCTTSC-------------CEECCCCTTSCEEEEEECTTSSE-EEEEESS-BEEE
T ss_pred             CC-EEEEEcCCCEEEEEECCCCCCC-------------ccEEeccCCCCEEEEEEeCCCCE-EEEEeCC-eEEE
Confidence            98 5899999999999999985432             133445 9999999999999995 5677755 6664

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.83  E-value=1.9e-19  Score=204.80  Aligned_cols=214  Identities=20%  Similarity=0.416  Sum_probs=173.1

Q ss_pred             EEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         604 MYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       604 l~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      +.+|+....+ +..+..|.+.|.+++|++   ..+++|+.||.|++||+.++........+.+|...|.+++|  ++. .
T Consensus       195 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~  268 (435)
T 1p22_A          195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-Y  268 (435)
T ss_dssp             EEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-E
T ss_pred             EEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-E
Confidence            4555554444 344456778899999974   58999999999999999886543334677899999999999  466 5


Q ss_pred             EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc
Q psy4578         683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK  762 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~  762 (860)
                      +++|+.||.               |++||++++   ..+..+.+|...|.++.|+  +. .+++|+.||.|++||++++.
T Consensus       269 l~s~~~dg~---------------i~vwd~~~~---~~~~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~~~  327 (435)
T 1p22_A          269 IVSASGDRT---------------IKVWNTSTC---EFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECGA  327 (435)
T ss_dssp             EEEEETTSE---------------EEEEETTTC---CEEEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTCC
T ss_pred             EEEEeCCCe---------------EEEEECCcC---cEEEEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCCCC
Confidence            899999998               999999987   6778888999999999995  45 59999999999999999988


Q ss_pred             eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578         763 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  842 (860)
Q Consensus       763 ~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~  842 (860)
                      . +..+.+|...|.+++|  ++. .+++|+.||.|++||+.+.......     ....++....+|.+.|++++|  ++.
T Consensus       328 ~-~~~~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~--~~~  396 (435)
T 1p22_A          328 C-LRVLEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAALDPRAP-----AGTLCLRTLVEHSGRVFRLQF--DEF  396 (435)
T ss_dssp             E-EEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHTSTTSC-----TTTTEEEEECCCSSCCCCEEE--CSS
T ss_pred             E-EEEEeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCCCcccc-----ccchheeeccCCCCCeEEEEe--CCC
Confidence            6 8889999999999999  565 4899999999999999764422111     112367778899999999999  666


Q ss_pred             eEEEEEeCCCeEee
Q psy4578         843 WVICSVSEDNIMQK  856 (860)
Q Consensus       843 ~Llasgs~Dg~IrI  856 (860)
                      + +++|+.||.|++
T Consensus       397 ~-l~s~s~Dg~i~i  409 (435)
T 1p22_A          397 Q-IVSSSHDDTILI  409 (435)
T ss_dssp             C-EEECCSSSEEEE
T ss_pred             E-EEEEeCCCEEEE
Confidence            4 779999999986

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.83  E-value=2.8e-19  Score=199.39  Aligned_cols=188  Identities=21%  Similarity=0.299  Sum_probs=152.4

Q ss_pred             eEEEEeeccchhhhhhhhhcccceeeeEeeccC--CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578         601 EEVMYLENKTRAQICQLLDKLRLLIDVAWHLLH--ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  678 (860)
Q Consensus       601 ~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~--~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~  678 (860)
                      ...+.+|+....+....+.+...+.+++|++.+  +.++++|+.||.|++||+.++   .....+.+|...|++++|+|+
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~  197 (408)
T 4a11_B          121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG---SCSHILQGHRQEILAVSWSPR  197 (408)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS---CCCEEECCCCSCEEEEEECSS
T ss_pred             CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc---ceeeeecCCCCcEEEEEECCC
Confidence            345677777777777777788899999999853  348999999999999999874   456778889999999999999


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCC-------------CCCeeeecCCCCCeEEEEEcCCCCcEEE
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV-------------SKPSHTVDAHTAEVNCLSFNPYSEYILA  745 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~-------------~~~~~~~~~h~~~I~sl~~sp~g~~lla  745 (860)
                      +.+++++|+.||.               |++||+++...             ........+|...|.+++|+|++.+ ++
T Consensus       198 ~~~ll~~~~~dg~---------------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~  261 (408)
T 4a11_B          198 YDYILATASADSR---------------VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH-LL  261 (408)
T ss_dssp             CTTEEEEEETTSC---------------EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-EE
T ss_pred             CCcEEEEEcCCCc---------------EEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE-EE
Confidence            9988999999999               99999876531             0111222578999999999999985 89


Q ss_pred             EeeCCCcEEEEeCCCCce----------------------------------------------eeEEeccCCCceEEEE
Q psy4578         746 TGSADKTVALWDLRNLKL----------------------------------------------KLHSFESHKDEIFQVQ  779 (860)
Q Consensus       746 sgs~Dg~I~IWDl~~~~~----------------------------------------------~~~~~~~h~~~V~~l~  779 (860)
                      +|+.||.|++||++++..                                              .+..+.+|...|++++
T Consensus       262 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~  341 (408)
T 4a11_B          262 TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCV  341 (408)
T ss_dssp             EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEE
Confidence            999999999999876431                                              2455677999999999


Q ss_pred             EcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         780 WSPHNETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       780 fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      |+|+++. |++|+.||.|++||+.+.+..
T Consensus       342 ~s~~~~~-l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          342 FQSNFQE-LYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             EETTTTE-EEEEETTSCEEEEEECC----
T ss_pred             EcCCCCE-EEEECCCCeEEEEeCCCCCcc
Confidence            9999985 899999999999999986543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.83  E-value=1.4e-18  Score=198.02  Aligned_cols=218  Identities=21%  Similarity=0.385  Sum_probs=178.6

Q ss_pred             EEEeeccchhh-hhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQ-ICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~-l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .+.+|+....+ +..+.+|.+.|.+++|+   ++++++|+.||.|++||+.++   .....+.+|...|.++.|+  +. 
T Consensus       140 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~-  210 (445)
T 2ovr_B          140 TLKVWSAVTGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETG---ECIHTLYGHTSTVRCMHLH--EK-  210 (445)
T ss_dssp             CEEEEETTTCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEE--TT-
T ss_pred             cEEEEECCCCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcC---cEEEEECCCCCcEEEEEec--CC-
Confidence            35556655444 44455677899999997   468999999999999999884   5577788999999999996  44 


Q ss_pred             EEEEEeCCCceeeeccccc-------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578         682 ILATGSADKTQFEVEEEEE-------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  736 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~-------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~  736 (860)
                      .+++|+.||++.+|+....                         +..+|.|++||++++   ..+..+.+|...|.+++|
T Consensus       211 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~  287 (445)
T 2ovr_B          211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE---TCLHTLQGHTNRVYSLQF  287 (445)
T ss_dssp             EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT---EEEEEECCCSSCEEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC---cEeEEecCCCCceEEEEE
Confidence            4899999999999987643                         245889999999886   667788899999999999


Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC
Q psy4578         737 NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED  816 (860)
Q Consensus       737 sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~  816 (860)
                        ++. .+++|+.||.|++||++++.. +..+.+|...+.++.++  +. ++++|+.||.|++||++++..         
T Consensus       288 --~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~vwd~~~~~~---------  351 (445)
T 2ovr_B          288 --DGI-HVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTSGMELK--DN-ILVSGNADSTVKIWDIKTGQC---------  351 (445)
T ss_dssp             --CSS-EEEEEETTSCEEEEETTTCCE-EEEECCCCSCEEEEEEE--TT-EEEEEETTSCEEEEETTTCCE---------
T ss_pred             --CCC-EEEEEeCCCeEEEEECCCCCE-EEEEcCCcccEEEEEEe--CC-EEEEEeCCCeEEEEECCCCcE---------
Confidence              566 489999999999999999887 78889999999998885  44 589999999999999987433         


Q ss_pred             CCCccEEEec---CccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         817 GPPELLFIHG---GHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       817 ~~~~~i~~~~---~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                           +..+.   .|...|++++|+  +. ++++|+.||.|++
T Consensus       352 -----~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~v~i  386 (445)
T 2ovr_B          352 -----LQTLQGPNKHQSAVTCLQFN--KN-FVITSSDDGTVKL  386 (445)
T ss_dssp             -----EEEECSTTSCSSCEEEEEEC--SS-EEEEEETTSEEEE
T ss_pred             -----EEEEccCCCCCCCEEEEEEC--CC-EEEEEeCCCeEEE
Confidence                 33333   388999999996  45 5889999999986

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.82  E-value=4.2e-19  Score=204.04  Aligned_cols=190  Identities=12%  Similarity=0.203  Sum_probs=143.7

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc----------------------------ccCeeeccCCCCCeeEE
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV----------------------------SKPSHTVDAHTAEVNCL  673 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~----------------------------~~~~~~~~~h~~~V~~l  673 (860)
                      ..|.+++|+| +|.++|+++.|++|+  |...+..                            ......+ .|...|.++
T Consensus        16 ~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~-~~~~~V~~v   91 (588)
T 2j04_A           16 DWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS-QPVCYPRVC   91 (588)
T ss_dssp             SSSCCEEECT-TSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT-SCSCCEEEE
T ss_pred             ccEEEEEECC-CCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec-CCCCcEEEE
Confidence            5688999998 888899999998885  3222110                            0111111 457889999


Q ss_pred             EEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCC-----CeEEEEEcCCCCcEEEEee
Q psy4578         674 SFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA-----EVNCLSFNPYSEYILATGS  748 (860)
Q Consensus       674 ~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~-----~I~sl~~sp~g~~llasgs  748 (860)
                      +|+|+|.. +|+++.||.               |++||...     .+..+. |..     .|.+++|||+|++ ||+|+
T Consensus        92 awSPdG~~-LAs~s~dg~---------------V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~-LAsgs  148 (588)
T 2j04_A           92 KPSPIDDW-MAVLSNNGN---------------VSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESS-IVVGN  148 (588)
T ss_dssp             EECSSSSC-EEEEETTSC---------------EEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSC-EEEEE
T ss_pred             EECCCCCE-EEEEeCCCc---------------EEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCE-EEEEc
Confidence            99999995 899999999               99999543     444455 554     5999999999996 99999


Q ss_pred             CCCcEEEEeCCCCce------eeEEe----ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578         749 ADKTVALWDLRNLKL------KLHSF----ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  818 (860)
Q Consensus       749 ~Dg~I~IWDl~~~~~------~~~~~----~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~  818 (860)
                      .||+|+|||+.++..      .+..+    .+|.+.|.+++|+|+|   +++++.|++|++||+......          
T Consensus       149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~----------  215 (588)
T 2j04_A          149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ----------  215 (588)
T ss_dssp             TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC----------
T ss_pred             CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc----------
Confidence            999999999998752      25665    6788899999999999   678889999999999874421          


Q ss_pred             CccEEEe-cCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         819 PELLFIH-GGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       819 ~~~i~~~-~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                       .....+ .+|...|.+++|+  |.+ +++++ ++.|++
T Consensus       216 -~~~~tL~~~h~~~V~svaFs--g~~-LASa~-~~tIkL  249 (588)
T 2j04_A          216 -PVSRMIQNASRRKITDLKIV--DYK-VVLTC-PGYVHK  249 (588)
T ss_dssp             -CCEEEEECCCSSCCCCEEEE--TTE-EEEEC-SSEEEE
T ss_pred             -cceeeecccccCcEEEEEEE--CCE-EEEEe-CCeEEE
Confidence             122334 4788999999999  564 65666 577775

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.82  E-value=9.9e-20  Score=204.84  Aligned_cols=214  Identities=12%  Similarity=0.107  Sum_probs=146.0

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc--cCeeeccCCCCCeeEEEEcc--------CCCeEEEEEeCCCce
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS--KPSHTVDAHTAEVNCLSFNP--------YSEYILATGSADKTQ  692 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~--~~~~~~~~h~~~V~~l~~sp--------~g~~llasgs~Dg~i  692 (860)
                      ....+.+.+.++.++++|+.|++|++||..++...  ..+..+.+|.+.|++++|+|        +++ +|++|+.|++ 
T Consensus        90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~t-  167 (393)
T 4gq1_A           90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCT-  167 (393)
T ss_dssp             -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSE-
T ss_pred             CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCe-
Confidence            33344444557889999999999999999875321  23456789999999999998        565 6999999999 


Q ss_pred             eeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceee-------
Q psy4578         693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL-------  765 (860)
Q Consensus       693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~-------  765 (860)
                                    |++||+.++   .....+.+|...|.+++|+|++..+|++|+.||+|++||++++....       
T Consensus       168 --------------v~~Wd~~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~  230 (393)
T 4gq1_A          168 --------------LIIWRLTDE---GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL  230 (393)
T ss_dssp             --------------EEEEEEETT---EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred             --------------EEEEECCCC---ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence                          999999876   55667778999999999999987679999999999999998765311       


Q ss_pred             -----------------EEeccCCCceEEEEEc-CCCCCEEEEEECCCcEEEEECCCCCcccccccccCC-----CCccE
Q psy4578         766 -----------------HSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG-----PPELL  822 (860)
Q Consensus       766 -----------------~~~~~h~~~V~~l~fs-p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~-----~~~~i  822 (860)
                                       ....+|...+.++.|+ |+|.. +++++.|+++++||+...............     .....
T Consensus       231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~-l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~  309 (393)
T 4gq1_A          231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSG-ILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNV  309 (393)
T ss_dssp             CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCE-EEEECTTSEEEEEEC-------------------CCSCSE
T ss_pred             cccceEEecccccceeeeecccccccceeeeeecCCCCE-EEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccc
Confidence                             1124577889999987 78875 889999999999999876544333211110     01111


Q ss_pred             EEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         823 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       823 ~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .....+...+..+.+.+.+..++++|+.||.|++
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~l  343 (393)
T 4gq1_A          310 QGISLFPSLLGACPHPRYMDYFATAHSQHGLIQL  343 (393)
T ss_dssp             EEECSSCCSSCCEECSSCTTEEEEEETTTTEEEE
T ss_pred             ccccccCcceeEEEccCCCCEEEEEECCCCEEEE
Confidence            2222233333334444456667889999999986

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.82  E-value=2.5e-18  Score=185.09  Aligned_cols=196  Identities=22%  Similarity=0.422  Sum_probs=160.6

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY  703 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~  703 (860)
                      +++|+|++ + ++|++|. |++|+|||+.+++... .....+|...|++++|+|++++ +++|+.||+            
T Consensus        28 ~~~l~WS~-~-~~lAvg~-D~tV~iWd~~tg~~~~-~~~~~~~~~~V~~v~~~~~~~~-l~sgs~Dg~------------   90 (318)
T 4ggc_A           28 LNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNY-LAVGTSSAE------------   90 (318)
T ss_dssp             CBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSE-EEEEETTSE------------
T ss_pred             ceEEEECC-C-CEEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCeEEEEEECCCCCE-EEEEECCCc------------
Confidence            46899997 3 4777665 8999999999864322 2234578889999999999995 899999999            


Q ss_pred             CCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCC
Q psy4578         704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH  783 (860)
Q Consensus       704 dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~  783 (860)
                         |++||++++   +.+..+.+|...+.++.+.  +. ++++|+.++.+++|+.......+..+.+|...+..+.|+++
T Consensus        91 ---v~iw~~~~~---~~~~~~~~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (318)
T 4ggc_A           91 ---VQLWDVQQQ---KRLRNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD  161 (318)
T ss_dssp             ---EEEEETTTT---EEEEEEECCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred             ---EEEeecCCc---eeEEEecCccceEEEeecC--CC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC
Confidence               999999987   6778888999988877665  44 69999999999999999887778888999999999999999


Q ss_pred             CCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEE--EEEeCCCeEee
Q psy4578         784 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI--CSVSEDNIMQK  856 (860)
Q Consensus       784 g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Ll--asgs~Dg~IrI  856 (860)
                      ++. +++++.||.|++||+++++..          .........|.+.|..++++|++..++  ++++.++.|++
T Consensus       162 ~~~-l~s~~~d~~i~iwd~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~l  225 (318)
T 4ggc_A          162 GRH-LASGGNDNLVNVWPSAPGEGG----------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI  225 (318)
T ss_dssp             SSE-EEEEETTSCEEEEESSCBTTB----------SCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEE
T ss_pred             CCE-EEEEecCcceeEEECCCCccc----------ccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEE
Confidence            985 899999999999999875432          223445567888999999999887655  46677888876

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.80  E-value=4.2e-19  Score=194.72  Aligned_cols=193  Identities=20%  Similarity=0.236  Sum_probs=151.9

Q ss_pred             EEEeeccch-h-hh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEE--cc
Q psy4578         603 VMYLENKTR-A-QI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF--NP  677 (860)
Q Consensus       603 il~l~n~~~-~-~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~--sp  677 (860)
                      .+.+|+... . .+ ..+..|.+.|.+++|+| ++.+|++|+.||.|++||+.++.   . ....+|...|++++|  +|
T Consensus        65 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~---~-~~~~~~~~~v~~~~~~~~~  139 (368)
T 3mmy_A           65 DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQ---A-IQIAQHDAPVKTIHWIKAP  139 (368)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE---E-EEEEECSSCEEEEEEEECS
T ss_pred             cEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCcEEEEEcCCCC---c-eeeccccCceEEEEEEeCC
Confidence            355565543 2 22 34556788999999998 88899999999999999998743   2 335679999999999  88


Q ss_pred             CCCeEEEEEeCCCceeeeccccc---------------------------------------------------------
Q psy4578         678 YSEYILATGSADKTQFEVEEEEE---------------------------------------------------------  700 (860)
Q Consensus       678 ~g~~llasgs~Dg~i~~~~~~~~---------------------------------------------------------  700 (860)
                      ++. ++++|+.||.+.+|+....                                                         
T Consensus       140 ~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (368)
T 3mmy_A          140 NYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCV  218 (368)
T ss_dssp             SCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEE
T ss_pred             CCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceE
Confidence            887 5899999999999986432                                                         


Q ss_pred             ---------------ccCCCcEEEEeCCCCCCCCCeeeecCCCC------------CeEEEEEcCCCCcEEEEeeCCCcE
Q psy4578         701 ---------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTA------------EVNCLSFNPYSEYILATGSADKTV  753 (860)
Q Consensus       701 ---------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~------------~I~sl~~sp~g~~llasgs~Dg~I  753 (860)
                                     +..+|.|++||++..........+.+|..            .|++++|+|++.+ |++|+.||.|
T Consensus       219 ~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i  297 (368)
T 3mmy_A          219 AIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATVGSDGRF  297 (368)
T ss_dssp             EEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-EEEEETTSCE
T ss_pred             EEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCE-EEEEccCCeE
Confidence                           12356677777766432233455666665            7999999999985 8999999999


Q ss_pred             EEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         754 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       754 ~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ++||++++.. +..+.+|...|++++|+|+|++ |++|+.|+..+.|++..
T Consensus       298 ~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~-l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          298 SFWDKDARTK-LKTSEQLDQPISACCFNHNGNI-FAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             EEEETTTTEE-EEECCCCSSCEEEEEECTTSSC-EEEEECCCSTTCGGGCC
T ss_pred             EEEECCCCcE-EEEecCCCCCceEEEECCCCCe-EEEEecccccccccccC
Confidence            9999999887 7888999999999999999986 88999888666665544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.80  E-value=4.5e-18  Score=192.35  Aligned_cols=227  Identities=14%  Similarity=0.148  Sum_probs=175.3

Q ss_pred             EEeeccchhhhh------hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578         604 MYLENKTRAQIC------QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  677 (860)
Q Consensus       604 l~l~n~~~~~l~------~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp  677 (860)
                      +++|+....+..      ....|.+.|.+++|++ ++.++++++.||.|++||+.++   .....+..|...+.+++|+|
T Consensus       146 i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~  221 (433)
T 3bws_A          146 MDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTL---AYKATVDLTGKWSKILLYDP  221 (433)
T ss_dssp             EEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTC---CEEEEEECSSSSEEEEEEET
T ss_pred             EEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCc---eEEEEEcCCCCCeeEEEEcC
Confidence            455555444333      2345677899999987 7889999999999999999874   44566668889999999999


Q ss_pred             CCCeEEEEEeCCCceeeeccccc--------------------------cc--------CCCcEEEEeCCCCCCCCCeee
Q psy4578         678 YSEYILATGSADKTQFEVEEEEE--------------------------EN--------YDQKLMIWDTRSHNVSKPSHT  723 (860)
Q Consensus       678 ~g~~llasgs~Dg~i~~~~~~~~--------------------------~~--------~dg~I~iwDl~~~~~~~~~~~  723 (860)
                      +++.++++++.|+.+.+|+....                          +.        .++.|++||+.++   +.+..
T Consensus       222 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~---~~~~~  298 (433)
T 3bws_A          222 IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE---KLIDT  298 (433)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT---EEEEE
T ss_pred             CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC---cEEee
Confidence            99987788888999999986532                          01        3678999999876   33333


Q ss_pred             ecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC----------
Q psy4578         724 VDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----------  793 (860)
Q Consensus       724 ~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~----------  793 (860)
                       ..|...+.+++|+|+++.++++++.|+.|++||+.+++. ...+. +...+.+++|+|+|+. +++++.          
T Consensus       299 -~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~  374 (433)
T 3bws_A          299 -IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV-QKSIP-VFDKPNTIALSPDGKY-LYVSCRGPNHPTEGYL  374 (433)
T ss_dssp             -EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSE-EEEEECCCCCTTTCTT
T ss_pred             -ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE-EEEec-CCCCCCeEEEcCCCCE-EEEEecCCCccccccc
Confidence             345668899999999988788889999999999998775 55554 6788999999999986 555554          


Q ss_pred             -----CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         794 -----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       794 -----Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                           ||.|++||+.+.+.              +..... ...+.+++|+|+|++++++++.|+.|++
T Consensus       375 ~~g~~dg~v~~~d~~~~~~--------------~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v  427 (433)
T 3bws_A          375 KKGLVLGKVYVIDTTTDTV--------------KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRV  427 (433)
T ss_dssp             SCCSSCCEEEEEETTTTEE--------------EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred             cccccceEEEEEECCCCcE--------------EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence                 57999999987432              233333 4578999999999987777777898876

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.78  E-value=1.3e-17  Score=181.22  Aligned_cols=199  Identities=23%  Similarity=0.335  Sum_probs=148.4

Q ss_pred             EEEeCCCcEEEE--EcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc---------------
Q psy4578         638 GSVADDQKLMIW--DTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE---------------  700 (860)
Q Consensus       638 asgs~DG~I~IW--d~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~---------------  700 (860)
                      .+|...|+..+|  ...+ +......++.+|.+.|++|+|+|++..+|+||+.||+|.+|+....               
T Consensus         8 ~~g~d~g~~~~~~~~~~~-~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~   86 (340)
T 4aow_A            8 SSGVDLGTENLYFQSMMT-EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS   86 (340)
T ss_dssp             -------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCS
T ss_pred             ccccCCCCccEEEEEccC-CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCC
Confidence            344444553333  3322 2234456789999999999999986557999999999888875421               


Q ss_pred             -----------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce
Q psy4578         701 -----------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL  763 (860)
Q Consensus       701 -----------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~  763 (860)
                                       +..|+.|++|+....   ........+...+..+.+++++.. +++|+.||.+++||......
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~~~~~d~~~~~~  162 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTG---TTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCK  162 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEE
T ss_pred             CCEEEEEECCCCCEEEEEcccccceEEeeccc---ceeeeecCCCCceeEEEEeecCcc-ceeecCCCeEEEEEeCCCce
Confidence                             235677888887765   445555667778888888888885 89999999999999988776


Q ss_pred             eeEEeccCCCceEEEEEcCCCC-CEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578         764 KLHSFESHKDEIFQVQWSPHNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  842 (860)
Q Consensus       764 ~~~~~~~h~~~V~~l~fsp~g~-~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~  842 (860)
                      ......+|...+.+++|++++. .++++++.|+.|++||+++              ...+..+.+|.+.|++++|+|+++
T Consensus       163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--------------~~~~~~~~~h~~~v~~~~~s~~~~  228 (340)
T 4aow_A          163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--------------CKLKTNHIGHTGYLNTVTVSPDGS  228 (340)
T ss_dssp             EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSS
T ss_pred             EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC--------------CceeeEecCCCCcEEEEEECCCCC
Confidence            5566778999999999998764 3578999999999999987              345667778999999999999999


Q ss_pred             eEEEEEeCCCeEee
Q psy4578         843 WVICSVSEDNIMQK  856 (860)
Q Consensus       843 ~Llasgs~Dg~IrI  856 (860)
                       ++++|+.|+.|++
T Consensus       229 -~l~s~s~Dg~i~i  241 (340)
T 4aow_A          229 -LCASGGKDGQAML  241 (340)
T ss_dssp             -EEEEEETTCEEEE
T ss_pred             -EEEEEeCCCeEEE
Confidence             5779999999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.77  E-value=6.1e-18  Score=191.28  Aligned_cols=204  Identities=12%  Similarity=0.076  Sum_probs=162.6

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe--eeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS--HTVDAHTAEVNCLSFNPYSEYILATGSADKTQ  692 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~--~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i  692 (860)
                      ...+.....+.+++|+| ++.++++++.|+.|++||+.+++.....  ..+.+|.+.|.+++|++++. ++++++.|+. 
T Consensus       116 ~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~-  192 (433)
T 3bws_A          116 ISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE-LWVSQMQANA-  192 (433)
T ss_dssp             EEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE-EEEEEGGGTE-
T ss_pred             EEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE-EEEEECCCCE-
Confidence            33344456678999999 8888999999999999999886432111  14457889999999999887 6899998888 


Q ss_pred             eeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC
Q psy4578         693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK  772 (860)
Q Consensus       693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~  772 (860)
                                    |++||+.++   ..+..+..|...+.+++|+|++..++++++.|+.|++||++++.. +..+.. .
T Consensus       193 --------------v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~  253 (433)
T 3bws_A          193 --------------VHVFDLKTL---AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-I  253 (433)
T ss_dssp             --------------EEEEETTTC---CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-C
T ss_pred             --------------EEEEECCCc---eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-C
Confidence                          999999876   566677788999999999999997667777899999999998875 555554 4


Q ss_pred             CceEEEEEcCCCCCEEEEEE--------CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeE
Q psy4578         773 DEIFQVQWSPHNETILASSG--------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWV  844 (860)
Q Consensus       773 ~~V~~l~fsp~g~~lL~tgs--------~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~L  844 (860)
                      ..+.+++|+|+|+. +++++        .||.|++||+.+++.              +.. ..|...+.+++|+|+++++
T Consensus       254 ~~~~~~~~~~~g~~-l~~~~~~~~~~~~~dg~i~~~d~~~~~~--------------~~~-~~~~~~~~~~~~~~~g~~l  317 (433)
T 3bws_A          254 GLPRGLLLSKDGKE-LYIAQFSASNQESGGGRLGIYSMDKEKL--------------IDT-IGPPGNKRHIVSGNTENKI  317 (433)
T ss_dssp             SEEEEEEECTTSSE-EEEEEEESCTTCSCCEEEEEEETTTTEE--------------EEE-EEEEECEEEEEECSSTTEE
T ss_pred             CCceEEEEcCCCCE-EEEEECCCCccccCCCeEEEEECCCCcE--------------Eee-ccCCCCcceEEECCCCCEE
Confidence            56999999999986 55665        588999999987432              111 2455678999999999988


Q ss_pred             EEEEeCCCeEee
Q psy4578         845 ICSVSEDNIMQK  856 (860)
Q Consensus       845 lasgs~Dg~IrI  856 (860)
                      +++++.|+.|++
T Consensus       318 ~~~~~~~~~v~v  329 (433)
T 3bws_A          318 YVSDMCCSKIEV  329 (433)
T ss_dssp             EEEETTTTEEEE
T ss_pred             EEEecCCCEEEE
Confidence            999999998876

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.76  E-value=7.1e-18  Score=182.81  Aligned_cols=174  Identities=11%  Similarity=0.105  Sum_probs=124.1

Q ss_pred             hhhhhhcccceeeeEeec--cCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC---CCeeEEEEccCCCeEEEEEeC
Q psy4578         614 ICQLLDKLRLLIDVAWHL--LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT---AEVNCLSFNPYSEYILATGSA  688 (860)
Q Consensus       614 l~~l~~~~~~V~~v~~sp--~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~---~~V~~l~~sp~g~~llasgs~  688 (860)
                      +.....|...++.++|++  .++.+|++|+.|++|+|||+.++   +.+.++.+|.   ..+.+++|+|+|.. +++++.
T Consensus       171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG---k~l~tL~g~~~~v~~v~~vafSpdG~~-lvs~s~  246 (356)
T 2w18_A          171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG---QLLKKMHIDDSYQASVCHKAYSEMGLL-FIVLSH  246 (356)
T ss_dssp             EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC---CEEEEEECCC---CCCEEEEEEETTEE-EEEEC-
T ss_pred             eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC---cEEEEEcCCCcceeeeEEEEECCCCCE-EEEecc
Confidence            334456667788888887  35689999999999999999985   4566666543   46788899999985 555443


Q ss_pred             CCceeeecccccccCCCcEEEEeCCCCCCCCCeeee-----cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce
Q psy4578         689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV-----DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL  763 (860)
Q Consensus       689 Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~-----~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~  763 (860)
                      +..+  | ....+..|+.|++||..++   ..+..+     .+|...+.+..++  +. ++++|+.||+|+|||+.+++.
T Consensus       247 ~~~~--w-~laSGs~D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~  317 (356)
T 2w18_A          247 PCAK--E-SESLRSPVFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQC  317 (356)
T ss_dssp             --------------CCEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSE
T ss_pred             CCCc--c-eeeccCCCcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcE
Confidence            3221  1 1123345566999999876   333222     4676665555544  55 599999999999999999997


Q ss_pred             eeEEeccCCCceE-EEEEcCCCCCEEEEEECCCcEEEEEC
Q psy4578         764 KLHSFESHKDEIF-QVQWSPHNETILASSGTDRRLHVWDL  802 (860)
Q Consensus       764 ~~~~~~~h~~~V~-~l~fsp~g~~lL~tgs~Dg~I~iWdl  802 (860)
                       +.++.+|...+. +++|+|+|++ |++|+.|++|++||+
T Consensus       318 -l~tL~gH~~~vvs~vafSPDG~~-LaSGS~D~TIklWd~  355 (356)
T 2w18_A          318 -TALLPPVSDQHWSFVKWSGTDSH-LLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -EEEECCC--CCCCEEEECSSSSE-EEEECTTSCEEEEEE
T ss_pred             -EEEecCCCCCeEEEEEECCCCCE-EEEEECCCcEEEecC
Confidence             888998887655 5899999985 899999999999995

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.76  E-value=6.6e-18  Score=192.78  Aligned_cols=205  Identities=14%  Similarity=0.149  Sum_probs=148.5

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-------ccCee-----eccCCCCCeeEEEEccCCCeEEE---EE
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-------SKPSH-----TVDAHTAEVNCLSFNPYSEYILA---TG  686 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-------~~~~~-----~~~~h~~~V~~l~~sp~g~~lla---sg  686 (860)
                      ..++.+++++ .+.++++|+.|| +++|+......       .....     ....+...|++++|+|+|+++++   +|
T Consensus        37 ~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           37 ERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            3588999998 677888888887 99987642100       00010     11235667999999999997444   67


Q ss_pred             eCCCceeeecccccccCCCcEEEEeCCCC-----CC---CCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578         687 SADKTQFEVEEEEEENYDQKLMIWDTRSH-----NV---SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL  758 (860)
Q Consensus       687 s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~-----~~---~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl  758 (860)
                      +.|++               |++||+.+.     ..   ...+..+.+|...|.+++|+|++..++++|+.||+|++||+
T Consensus       115 s~d~~---------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~  179 (434)
T 2oit_A          115 EYGSI---------------IAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV  179 (434)
T ss_dssp             TTEEE---------------EEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEE
T ss_pred             CCCce---------------EEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEc
Confidence            77887               999998654     11   11245567799999999999985557999999999999999


Q ss_pred             CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc
Q psy4578         759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN  838 (860)
Q Consensus       759 ~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s  838 (860)
                      +++.. .....+|...|++++|+|+|.+ |++|+.||.|++||++ +..........       .....|...|.+++|+
T Consensus       180 ~~~~~-~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~-~~~~~~~~~~~-------~~~~~~~~~v~~v~w~  249 (434)
T 2oit_A          180 TETVK-VCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPT-LQEKKVIPCPP-------FYESDHPVRVLDVLWI  249 (434)
T ss_dssp             SSSEE-EEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTT-CCEEEEECCCT-------TCCTTSCEEEEEEEEE
T ss_pred             CCCcc-eeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccC-CcccccccCCc-------ccCCCCceeEEEEEEe
Confidence            98865 5556678899999999999986 8899999999999988 22211111000       0011345589999999


Q ss_pred             cCCCeEEEEEeCCCe
Q psy4578         839 PNEPWVICSVSEDNI  853 (860)
Q Consensus       839 pdg~~Llasgs~Dg~  853 (860)
                      +++.++++.++.||.
T Consensus       250 ~~~~~l~~~~~~dg~  264 (434)
T 2oit_A          250 GTYVFAIVYAAADGT  264 (434)
T ss_dssp             ETTEEEEEEEETTCC
T ss_pred             cCceEEEEEccCCCc
Confidence            999887777777654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.75  E-value=5.3e-17  Score=180.92  Aligned_cols=183  Identities=12%  Similarity=0.146  Sum_probs=146.8

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR  713 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~  713 (860)
                      +.++++++.||.|++||+.++   +....+..|. .+.+++|+|++++++++++.|+.               |++||+.
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~---------------i~v~d~~   62 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSN---KVTATIPVGS-NPMGAVISPDGTKVYVANAHSND---------------VSIIDTA   62 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTE---------------EEEEETT
T ss_pred             CEEEEEcCCCCEEEEEECCCC---eEEEEeecCC-CcceEEECCCCCEEEEECCCCCe---------------EEEEECC
Confidence            457889999999999999874   4455555554 58999999999987788888888               9999998


Q ss_pred             CCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC
Q psy4578         714 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT  793 (860)
Q Consensus       714 ~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~  793 (860)
                      ++   +.+..+..+. .+.+++|+|++++++++++.++.|++||+.+++. +..+.. ...+.+++|+|+|+.++++++.
T Consensus        63 ~~---~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~  136 (391)
T 1l0q_A           63 TN---NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNG  136 (391)
T ss_dssp             TT---EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETT
T ss_pred             CC---eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEeC-CCCcceEEECCCCCEEEEEeCC
Confidence            76   4455555444 8999999999998667777889999999999876 555554 4578999999999976688889


Q ss_pred             CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         794 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       794 Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |+.|++||+.++..              +.....+ ..+.+++|+|+|++++++++.|+.|++
T Consensus       137 ~~~v~~~d~~~~~~--------------~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~  184 (391)
T 1l0q_A          137 DKTVSVINTVTKAV--------------INTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISV  184 (391)
T ss_dssp             TTEEEEEETTTTEE--------------EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCEEEEEECCCCcE--------------EEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEE
Confidence            99999999987432              3333333 457899999999988789999998875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.75  E-value=2e-16  Score=179.36  Aligned_cols=211  Identities=15%  Similarity=0.097  Sum_probs=157.8

Q ss_pred             EEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCC---cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578         602 EVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQ---KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  678 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG---~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~  678 (860)
                      ..+++|+........+..|...|.+++|+| ++..+++++.++   .|++||+.+++.    ..+..|.+.+.+++|+|+
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~----~~l~~~~~~~~~~~~spd  233 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV----RQVASFPRHNGAPAFSPD  233 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE----EEEECCSSCEEEEEECTT
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcE----EEeecCCCcccCEEEcCC
Confidence            456677766666666777888999999999 788888888775   999999987532    345667889999999999


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC--cEEEE
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK--TVALW  756 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg--~I~IW  756 (860)
                      |+.++++++.++.             ..|++||+.++.    ...+..|...+.+++|+|+|+++++++..+|  .|.+|
T Consensus       234 g~~la~~~~~~g~-------------~~i~~~d~~~~~----~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~  296 (415)
T 2hqs_A          234 GSKLAFALSKTGS-------------LNLYVMDLASGQ----IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV  296 (415)
T ss_dssp             SSEEEEEECTTSS-------------CEEEEEETTTCC----EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             CCEEEEEEecCCC-------------ceEEEEECCCCC----EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence            9986667776653             348899998752    3566778889999999999997444443455  57777


Q ss_pred             eCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC--CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578         757 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT--DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  834 (860)
Q Consensus       757 Dl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~--Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~  834 (860)
                      |+.++..  ..+..+...+.+++|+|+|+++++++..  ++.|++||+.++..               ..+..+. .+.+
T Consensus       297 d~~~~~~--~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---------------~~l~~~~-~~~~  358 (415)
T 2hqs_A          297 NINGGAP--QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------------QVLSSTF-LDET  358 (415)
T ss_dssp             ETTSSCC--EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---------------EECCCSS-SCEE
T ss_pred             ECCCCCE--EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---------------EEecCCC-CcCC
Confidence            9887763  4455677889999999999974444444  35899999987432               2233343 7899


Q ss_pred             EEEccCCCeEEEEEeCCC
Q psy4578         835 FSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       835 i~~spdg~~Llasgs~Dg  852 (860)
                      ++|+|+|+++++++.+++
T Consensus       359 ~~~spdg~~l~~~s~~~~  376 (415)
T 2hqs_A          359 PSLAPNGTMVIYSSSQGM  376 (415)
T ss_dssp             EEECTTSSEEEEEEEETT
T ss_pred             eEEcCCCCEEEEEEcCCC
Confidence            999999997766666554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.73  E-value=4.7e-17  Score=185.70  Aligned_cols=211  Identities=13%  Similarity=0.095  Sum_probs=146.8

Q ss_pred             cccceeeeEeeccCCcEEE----EEeCCCcEEEEEcCCC-----C---cccCeeeccCCCCCeeEEEEccCCCeEEEEEe
Q psy4578         620 KLRLLIDVAWHLLHESLFG----SVADDQKLMIWDTRSH-----N---VSKPSHTVDAHTAEVNCLSFNPYSEYILATGS  687 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~la----sgs~DG~I~IWd~~~~-----~---~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs  687 (860)
                      +.+.|.+++|+| ++.+|+    +|+.||.|+|||+.++     .   .......+.+|...|++++|+|++..++++|+
T Consensus        91 ~~~~v~~l~~sp-dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s  169 (434)
T 2oit_A           91 MKFPIHHLALSC-DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL  169 (434)
T ss_dssp             CSSCEEEEEECT-TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred             CCCcccEEEEcC-CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence            345699999999 677777    7888999999998753     1   11124556779999999999998555799999


Q ss_pred             CCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE
Q psy4578         688 ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS  767 (860)
Q Consensus       688 ~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~  767 (860)
                      .||+               |++||++++   .......+|...|++++|+|+|.+ |++|+.||.|++||.+ +.. ...
T Consensus       170 ~Dg~---------------v~iwD~~~~---~~~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~-~~~-~~~  228 (434)
T 2oit_A          170 ADGS---------------IAVLQVTET---VKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPT-LQE-KKV  228 (434)
T ss_dssp             TTSC---------------EEEEEESSS---EEEEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTT-CCE-EEE
T ss_pred             CCCe---------------EEEEEcCCC---cceeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccC-Ccc-ccc
Confidence            9999               999999986   344455678899999999999996 8999999999999998 333 333


Q ss_pred             eccC-------CCceEEEEEcCCCCCEEEEEECCCc------EEEEECCCCCccc--ccccccCCCCccEEEecCccCce
Q psy4578         768 FESH-------KDEIFQVQWSPHNETILASSGTDRR------LHVWDLSKIGEEQ--STEDAEDGPPELLFIHGGHTAKI  832 (860)
Q Consensus       768 ~~~h-------~~~V~~l~fsp~g~~lL~tgs~Dg~------I~iWdl~~~~~~~--~~~~~~~~~~~~i~~~~~h~~~I  832 (860)
                      +..|       ...|.+++|++++.+++++++.||.      +++|++++.+...  .+...    ..+.+...+...+-
T Consensus       229 ~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~----~~~~~~~~~~r~~~  304 (434)
T 2oit_A          229 IPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNF----MEPCYGSCTERQHH  304 (434)
T ss_dssp             ECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEEC----CCSSCCCCSSSCCC
T ss_pred             ccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEec----ccCCCCCCCCcCcc
Confidence            4333       3389999999988765555656643      8999998743211  11100    01111111222223


Q ss_pred             EEEEEccCCCeEEEEEeCCCeEee
Q psy4578         833 SDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       833 ~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ..+.+-++.+.++++.+..+.|.|
T Consensus       305 ~~~~~l~dw~l~~v~s~~s~dv~v  328 (434)
T 2oit_A          305 YYLSYIEEWDLVLAASAASTEVSI  328 (434)
T ss_dssp             EEEEEEGGGTEEEEEETTCSBCEE
T ss_pred             eeeehhccCCEEEEecCCCCceeE
Confidence            344455777777777666655543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.71  E-value=7.1e-16  Score=163.01  Aligned_cols=215  Identities=9%  Similarity=0.040  Sum_probs=154.6

Q ss_pred             ceeEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC-CCcccCeeeccCC-CCCeeEEEEc
Q psy4578         599 HIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS-HNVSKPSHTVDAH-TAEVNCLSFN  676 (860)
Q Consensus       599 ~l~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~-~~~~~~~~~~~~h-~~~V~~l~~s  676 (860)
                      .....+++|+....+...+..+...|.+++|+| ++.++++++ ++.|.+||+.+ +..   ......+ ...+.+++|+
T Consensus        19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSP---EKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSC---EECCCTTCCCBCSCCEEC
T ss_pred             CcceeEEEEeCCCCceeeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCc---eEeccccccccccceEEC
Confidence            445567778877777777778888999999999 677888776 78999999987 533   2333344 4678999999


Q ss_pred             cCCCeEEEEEeCC--CceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEE
Q psy4578         677 PYSEYILATGSAD--KTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA  754 (860)
Q Consensus       677 p~g~~llasgs~D--g~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~  754 (860)
                      |++++ +++++.+  +.             ..|..|+..++    ....+..+ ..+.+++|+|++++++++++.|+.+.
T Consensus        94 pdg~~-l~~~~~~~~~~-------------~~l~~~~~~~~----~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~  154 (297)
T 2ojh_A           94 PDGAL-YAISDKVEFGK-------------SAIYLLPSTGG----TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFD  154 (297)
T ss_dssp             TTSSE-EEEEECTTTSS-------------CEEEEEETTCC----CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred             CCCCE-EEEEEeCCCCc-------------ceEEEEECCCC----ceEEeecC-CCccceEECCCCCEEEEEECCCCceE
Confidence            99996 5555532  33             22444555443    22333333 34899999999998666888999999


Q ss_pred             EEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578         755 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  834 (860)
Q Consensus       755 IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~  834 (860)
                      ||+++........+..+...+.+++|+|+|+.+++++..++.+++|++....             .....+..|...+..
T Consensus       155 l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~~~~~~~  221 (297)
T 2ojh_A          155 IYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-------------SSVERITDSAYGDWF  221 (297)
T ss_dssp             EEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-------------SCEEECCCCSEEEEE
T ss_pred             EEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC-------------CCcEEEecCCcccCC
Confidence            9996533222556677888999999999999755555579999999986311             123445567778999


Q ss_pred             EEEccCCCeEEEEEeC
Q psy4578         835 FSWNPNEPWVICSVSE  850 (860)
Q Consensus       835 i~~spdg~~Llasgs~  850 (860)
                      ++|+|+|+++++++.+
T Consensus       222 ~~~s~dg~~l~~~~~~  237 (297)
T 2ojh_A          222 PHPSPSGDKVVFVSYD  237 (297)
T ss_dssp             EEECTTSSEEEEEEEE
T ss_pred             eEECCCCCEEEEEEcC
Confidence            9999999976655554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.69  E-value=1.1e-15  Score=173.17  Aligned_cols=214  Identities=11%  Similarity=0.084  Sum_probs=152.1

Q ss_pred             eeEEEEeecc--chhhhh---hhhhcccceeeeEeecc-------------CCcEEEEEeCC------CcEEEEEcCCCC
Q psy4578         600 IEEVMYLENK--TRAQIC---QLLDKLRLLIDVAWHLL-------------HESLFGSVADD------QKLMIWDTRSHN  655 (860)
Q Consensus       600 l~~il~l~n~--~~~~l~---~l~~~~~~V~~v~~sp~-------------~~~~lasgs~D------G~I~IWd~~~~~  655 (860)
                      ....+.+|+.  ..++..   .+..+...+..+++++.             .+..++.++.+      +.|++||+..+ 
T Consensus        91 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-  169 (415)
T 2hqs_A           91 YNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-  169 (415)
T ss_dssp             EEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-
T ss_pred             EEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-
Confidence            4445677776  544432   24455566777776641             14455555543      79999999742 


Q ss_pred             cccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEE
Q psy4578         656 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS  735 (860)
Q Consensus       656 ~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~  735 (860)
                         ....+.+|...+.+++|+|+|++ +++++.++.            +..|++||+.+++    ...+..|...+.+++
T Consensus       170 ---~~~~l~~~~~~v~~~~~Spdg~~-la~~s~~~~------------~~~i~~~d~~tg~----~~~l~~~~~~~~~~~  229 (415)
T 2hqs_A          170 ---NQFVVHRSPQPLMSPAWSPDGSK-LAYVTFESG------------RSALVIQTLANGA----VRQVASFPRHNGAPA  229 (415)
T ss_dssp             ---SCEEEEEESSCEEEEEECTTSSE-EEEEECTTS------------SCEEEEEETTTCC----EEEEECCSSCEEEEE
T ss_pred             ---CCEEEeCCCCcceeeEEcCCCCE-EEEEEecCC------------CcEEEEEECCCCc----EEEeecCCCcccCEE
Confidence               34566678899999999999996 666666641            2339999998763    235667888999999


Q ss_pred             EcCCCCcEEEEeeCCCc--EEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC-CC--cEEEEECCCCCcccc
Q psy4578         736 FNPYSEYILATGSADKT--VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DR--RLHVWDLSKIGEEQS  810 (860)
Q Consensus       736 ~sp~g~~llasgs~Dg~--I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~-Dg--~I~iWdl~~~~~~~~  810 (860)
                      |+|+|+.++++++.||.  |++||+.++..  ..+..|...+.+++|+|+|++ |++++. ++  .|++||+.++..   
T Consensus       230 ~spdg~~la~~~~~~g~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~spdg~~-l~~~s~~~g~~~i~~~d~~~~~~---  303 (415)
T 2hqs_A          230 FSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGAP---  303 (415)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSCC---
T ss_pred             EcCCCCEEEEEEecCCCceEEEEECCCCCE--EeCcCCCCcccceEECCCCCE-EEEEECCCCCcEEEEEECCCCCE---
Confidence            99999975557777665  99999988764  567778889999999999997 455554 55  677778776331   


Q ss_pred             cccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         811 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       811 ~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                                  .....+...+.+++|+|+|+++++++.+++
T Consensus       304 ------------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g  333 (415)
T 2hqs_A          304 ------------QRITWEGSQNQDADVSSDGKFMVMVSSNGG  333 (415)
T ss_dssp             ------------EECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             ------------EEEecCCCcccCeEECCCCCEEEEEECcCC
Confidence                        122345667889999999998776666644

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.68  E-value=1.1e-15  Score=161.57  Aligned_cols=216  Identities=12%  Similarity=0.112  Sum_probs=153.1

Q ss_pred             EEEeeccch-hhhhhhhhcc--cceeeeEeeccCCcEEEEEe--CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578         603 VMYLENKTR-AQICQLLDKL--RLLIDVAWHLLHESLFGSVA--DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  677 (860)
Q Consensus       603 il~l~n~~~-~~l~~l~~~~--~~V~~v~~sp~~~~~lasgs--~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp  677 (860)
                      .+++|+... .+...+...+  ..+.+++|+| ++..+++++  .++...||.+....  .....+..+ ..+.+++|+|
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~-~~~~~~~~sp  138 (297)
T 2ojh_A           63 LLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTG--GTPRLMTKN-LPSYWHGWSP  138 (297)
T ss_dssp             EEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTC--CCCEECCSS-SSEEEEEECT
T ss_pred             eEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECCC--CceEEeecC-CCccceEECC
Confidence            456666655 5554444333  6789999999 677888887  44566666654321  112333333 3489999999


Q ss_pred             CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578         678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD  757 (860)
Q Consensus       678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD  757 (860)
                      ++++++++++.++.               +++|++....  .....+..|...+.+++|+|+|.++++++..++.+.+|+
T Consensus       139 dg~~l~~~~~~~~~---------------~~l~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~  201 (297)
T 2ojh_A          139 DGKSFTYCGIRDQV---------------FDIYSMDIDS--GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWR  201 (297)
T ss_dssp             TSSEEEEEEEETTE---------------EEEEEEETTT--CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             CCCEEEEEECCCCc---------------eEEEEEECCC--CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEE
Confidence            99987778888887               8888865321  334556678889999999999997555666799999999


Q ss_pred             CCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-----------CcEEEEECCCCCcccccccccCCCCccEEEec
Q psy4578         758 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-----------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG  826 (860)
Q Consensus       758 l~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-----------g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~  826 (860)
                      ++........+..|...+.+++|+|+|++ |++++.+           +.|++||+.+...            ..+....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~------------~~~~~~~  268 (297)
T 2ojh_A          202 VRVDGSSVERITDSAYGDWFPHPSPSGDK-VVFVSYDADVFDHPRDLDVRVQLMDMDGGNV------------ETLFDLF  268 (297)
T ss_dssp             EETTSSCEEECCCCSEEEEEEEECTTSSE-EEEEEEETTCCSCCSSEEEEEEEEETTSCSC------------EEEEEEE
T ss_pred             ECCCCCCcEEEecCCcccCCeEECCCCCE-EEEEEcCCCCCcccccCceEEEEEecCCCCc------------eeeeccC
Confidence            87333236677778888999999999997 5555544           5699999887432            2344445


Q ss_pred             CccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         827 GHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       827 ~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      +|...+.+++|+|+|+++++++.+++
T Consensus       269 ~~~~~~~~~~~spdg~~l~~~~~~~~  294 (297)
T 2ojh_A          269 GGQGTMNSPNWSPDGDEFAYVRYFPV  294 (297)
T ss_dssp             ESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred             CCCcccccceECCCCCEEEEEEeccC
Confidence            67888999999999998776666654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.68  E-value=1.6e-15  Score=164.65  Aligned_cols=228  Identities=9%  Similarity=0.143  Sum_probs=155.1

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCC-CcEEEEEcC--CCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADD-QKLMIWDTR--SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~D-G~I~IWd~~--~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      .....+...+.+++|+| +++.+++++.+ +.|.+|++.  ++.. ..+..+..+. .+.+++|+|+++++++++..++.
T Consensus        31 ~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~  107 (343)
T 1ri6_A           31 TQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGN  107 (343)
T ss_dssp             EEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE-EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTE
T ss_pred             eeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCce-eeccccccCC-CCcEEEEcCCCCEEEEEecCCCe
Confidence            34455667899999999 67766666665 999999997  4322 2333443333 78999999999986677767888


Q ss_pred             eeeecc---ccc---------------------------ccCCCcEEEEeCCCCCCCCCee--eec-CCCCCeEEEEEcC
Q psy4578         692 QFEVEE---EEE---------------------------ENYDQKLMIWDTRSHNVSKPSH--TVD-AHTAEVNCLSFNP  738 (860)
Q Consensus       692 i~~~~~---~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~--~~~-~h~~~I~sl~~sp  738 (860)
                      +.+|+.   ...                           ...++.|.+||+.+........  ... .....+.+++|+|
T Consensus       108 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  187 (343)
T 1ri6_A          108 VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP  187 (343)
T ss_dssp             EEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT
T ss_pred             EEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC
Confidence            999887   211                           1146789999998621111111  222 2345788999999


Q ss_pred             CCCcEEEEeeCCCcEEEEeCCC--Ccee-eEEec----cC--CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578         739 YSEYILATGSADKTVALWDLRN--LKLK-LHSFE----SH--KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  809 (860)
Q Consensus       739 ~g~~llasgs~Dg~I~IWDl~~--~~~~-~~~~~----~h--~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~  809 (860)
                      ++.++++++..++.|.+||++.  +... .....    ++  ...+.+++|+|+|+++++++..++.|.+||+.....  
T Consensus       188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~--  265 (343)
T 1ri6_A          188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS--  265 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC--
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC--
Confidence            9997667777899999999964  3221 11221    11  235778999999997666777899999999974111  


Q ss_pred             ccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         810 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       810 ~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                              ....+.....+.. +.+++|+|+|+++++++..++.+.+
T Consensus       266 --------~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v  303 (343)
T 1ri6_A          266 --------VLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISV  303 (343)
T ss_dssp             --------CEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEE
T ss_pred             --------ceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEE
Confidence                    1122333333333 8899999999987877767888775

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.65  E-value=1.2e-14  Score=159.50  Aligned_cols=210  Identities=12%  Similarity=0.128  Sum_probs=144.9

Q ss_pred             hcccceeeeEeeccCCcEEEEEe-CCCcEEEEEcCCCCcccCeeeccC---------CCCCeeEEEEccCCCeEEEEEeC
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVA-DDQKLMIWDTRSHNVSKPSHTVDA---------HTAEVNCLSFNPYSEYILATGSA  688 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs-~DG~I~IWd~~~~~~~~~~~~~~~---------h~~~V~~l~~sp~g~~llasgs~  688 (860)
                      .+...+..++|+| +++++++++ .++.|.+|++........+..+..         +...+.+++|+|+|+ +++++..
T Consensus        83 ~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~  160 (347)
T 3hfq_A           83 APGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG  160 (347)
T ss_dssp             EESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT
T ss_pred             cCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC
Confidence            3556789999999 666666666 789999999964222222222211         123588999999999 7888777


Q ss_pred             CCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC-CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC--Ccee-
Q psy4578         689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA-HTAEVNCLSFNPYSEYILATGSADKTVALWDLRN--LKLK-  764 (860)
Q Consensus       689 Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~-h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~--~~~~-  764 (860)
                      ++.               |.+||+...........+.. ....+..++|+|+|+++++++..++.|.+|++..  +... 
T Consensus       161 ~~~---------------v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~  225 (347)
T 3hfq_A          161 SDK---------------VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ  225 (347)
T ss_dssp             TTE---------------EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             CCE---------------EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence            777               99999883211112222222 2336788999999998777778899999999874  3321 


Q ss_pred             eEEeccCC------CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc
Q psy4578         765 LHSFESHK------DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN  838 (860)
Q Consensus       765 ~~~~~~h~------~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s  838 (860)
                      ........      ..+..++|+|+|+++++++..++.|.+|++.....           ...+.....+...+.+++|+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~s  294 (347)
T 3hfq_A          226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH-----------LTLIQQISTEGDFPRDFDLD  294 (347)
T ss_dssp             EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC-----------EEEEEEEECSSSCCCEEEEC
T ss_pred             eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc-----------EEEeEEEecCCCCcCeEEEC
Confidence            22222222      45889999999998667788899999999874211           12344444556678899999


Q ss_pred             cCCCeEEEEEeCCCeEee
Q psy4578         839 PNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       839 pdg~~Llasgs~Dg~IrI  856 (860)
                      |+|+++++++..++.+.+
T Consensus       295 pdg~~l~v~~~~~~~v~v  312 (347)
T 3hfq_A          295 PTEAFVVVVNQNTDNATL  312 (347)
T ss_dssp             TTSSEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEEcCCCcEEE
Confidence            999988877777777764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.63  E-value=2.3e-14  Score=156.65  Aligned_cols=217  Identities=10%  Similarity=0.080  Sum_probs=157.8

Q ss_pred             eEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCC---------Cee
Q psy4578         601 EEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTA---------EVN  671 (860)
Q Consensus       601 ~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~---------~V~  671 (860)
                      ...++.++....+..........+.+++|+|+++.+++++..++.|.+||..+++.   ...+..+..         .+.
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~  144 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV---KGRLVLDDRKRTEEVRPLQPR  144 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEEEESCCCCCCSSCCCCEEE
T ss_pred             CccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee---EEEEecCCCccccccCCCCCc
Confidence            34566677666666666666667899999995455667777789999999988543   333333221         278


Q ss_pred             EEEEccCCCeEEEEE-eCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC
Q psy4578         672 CLSFNPYSEYILATG-SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD  750 (860)
Q Consensus       672 ~l~~sp~g~~llasg-s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D  750 (860)
                      +++|+|+|+.+++++ +.++.               |.+||..++   +....+..+...+.+++|+|+|++ +++++.+
T Consensus       145 ~~~~s~dg~~l~~~~~~~~~~---------------i~~~d~~~~---~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~  205 (353)
T 3vgz_A          145 ELVADDATNTVYISGIGKESV---------------IWVVDGGNI---KLKTAIQNTGKMSTGLALDSEGKR-LYTTNAD  205 (353)
T ss_dssp             EEEEETTTTEEEEEEESSSCE---------------EEEEETTTT---EEEEEECCCCTTCCCCEEETTTTE-EEEECTT
T ss_pred             eEEECCCCCEEEEEecCCCce---------------EEEEcCCCC---ceEEEecCCCCccceEEECCCCCE-EEEEcCC
Confidence            999999999766665 34666               999999876   445555545666889999999996 6677789


Q ss_pred             CcEEEEeCCCCceeeEEecc----CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec
Q psy4578         751 KTVALWDLRNLKLKLHSFES----HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG  826 (860)
Q Consensus       751 g~I~IWDl~~~~~~~~~~~~----h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~  826 (860)
                      +.|.+||..++.. ...+..    +...+.+++|+|+|+++++++..++.|.+||..+++....              ..
T Consensus       206 ~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--------------~~  270 (353)
T 3vgz_A          206 GELITIDTADNKI-LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK--------------VA  270 (353)
T ss_dssp             SEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE--------------EE
T ss_pred             CeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE--------------EE
Confidence            9999999998876 444442    5567889999999997666666679999999987543221              11


Q ss_pred             CccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         827 GHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       827 ~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ...  ..+++|+|+|+++++++..++.|.+
T Consensus       271 ~~~--~~~~~~s~dg~~l~v~~~~~~~v~~  298 (353)
T 3vgz_A          271 APE--SLAVLFNPARNEAYVTHRQAGKVSV  298 (353)
T ss_dssp             CSS--CCCEEEETTTTEEEEEETTTTEEEE
T ss_pred             cCC--CceEEECCCCCEEEEEECCCCeEEE
Confidence            111  2568999999988888877887765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.62  E-value=2.4e-14  Score=157.02  Aligned_cols=238  Identities=9%  Similarity=0.081  Sum_probs=153.8

Q ss_pred             cceeecccceeEEEEeeccchhhhh--hhhhcccceeeeEeeccCCcEEEEEeC--CCcEEEEEcCCCCcccCeeeccCC
Q psy4578         591 QGYFKGTHHIEEVMYLENKTRAQIC--QLLDKLRLLIDVAWHLLHESLFGSVAD--DQKLMIWDTRSHNVSKPSHTVDAH  666 (860)
Q Consensus       591 ~G~~~Gs~~l~~il~l~n~~~~~l~--~l~~~~~~V~~v~~sp~~~~~lasgs~--DG~I~IWd~~~~~~~~~~~~~~~h  666 (860)
                      .|.+.+.......++.++...+.+.  ....+...+..++|+| ++++++++..  ++.|.+|++.++.. ..+..+..+
T Consensus         7 vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp-dg~l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~   84 (347)
T 3hfq_A            7 FGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA-KDCLYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAP   84 (347)
T ss_dssp             EEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT-TCEEEEEEEETTEEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             EEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc-CCeEEEEEecCCCceEEEEEecCCcE-EEeeeeecC
Confidence            3444433333334555555444432  2344557788999999 5555555443  68999999976432 334444456


Q ss_pred             CCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC---------CCCCeEEEEEc
Q psy4578         667 TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA---------HTAEVNCLSFN  737 (860)
Q Consensus       667 ~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~---------h~~~I~sl~~s  737 (860)
                      ...+..++|+|+|+++++++..++.               +.+||+........+..+..         +...+.+++|+
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~---------------v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s  149 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGT---------------AEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT  149 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTE---------------EEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCE---------------EEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC
Confidence            7788999999999975555557777               88888853321122222221         22358899999


Q ss_pred             CCCCcEEEEeeCCCcEEEEeCC-CCcee-eEEecc-CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccc
Q psy4578         738 PYSEYILATGSADKTVALWDLR-NLKLK-LHSFES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA  814 (860)
Q Consensus       738 p~g~~llasgs~Dg~I~IWDl~-~~~~~-~~~~~~-h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~  814 (860)
                      |+|+ +++++..++.|.+||+. ++... ...+.. ....+..++|+|+|+++++++..++.|.+|++......      
T Consensus       150 pdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~------  222 (347)
T 3hfq_A          150 PDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA------  222 (347)
T ss_dssp             TTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE------
T ss_pred             CCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc------
Confidence            9999 78888889999999998 44321 122222 23467889999999976766778899999998751110      


Q ss_pred             cCCCCccEEEecCc------cCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         815 EDGPPELLFIHGGH------TAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       815 ~~~~~~~i~~~~~h------~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                          ...+......      ...+..++|+|||+++++++..++.|.+
T Consensus       223 ----~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v  266 (347)
T 3hfq_A          223 ----FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV  266 (347)
T ss_dssp             ----EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred             ----eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence                0111111111      1458899999999988888887877764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.61  E-value=3.1e-14  Score=154.61  Aligned_cols=222  Identities=9%  Similarity=0.074  Sum_probs=148.9

Q ss_pred             EEEeeccchhhhhhhhh-cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQICQLLD-KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~-~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .+.+++....++..... +...+ +++|+|++..+++++..++.|.+||..++..  ....+..+..+..+++|+|+|++
T Consensus        21 ~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~   97 (331)
T 3u4y_A           21 RISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--KVVAIQEGQSSMADVDITPDDQF   97 (331)
T ss_dssp             EEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--EEEEEEECSSCCCCEEECTTSSE
T ss_pred             eEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--eEEecccCCCCccceEECCCCCE
Confidence            34455555555443333 33455 9999994443555555589999999988532  14445555666656999999997


Q ss_pred             EEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc-EEEEeCCC
Q psy4578         682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT-VALWDLRN  760 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~-I~IWDl~~  760 (860)
                      ++ ++..++            ..+.|.+||+.++   ..+..+. +.....+++|+|+|+++++++..++. |.+|++..
T Consensus        98 l~-~~~~~~------------~~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           98 AV-TVTGLN------------HPFNMQSYSFLKN---KFISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             EE-ECCCSS------------SSCEEEEEETTTT---EEEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             EE-EecCCC------------CcccEEEEECCCC---CeEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            55 444332            0113999999876   3344444 34567999999999987777777788 99999986


Q ss_pred             Cceee---EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578         761 LKLKL---HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  837 (860)
Q Consensus       761 ~~~~~---~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~  837 (860)
                      .....   ...........+++|+|+|+++++++..++.|.+||+.++...           ..+.... ....+.+++|
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-----------~~~~~~~-~~~~~~~~~~  228 (331)
T 3u4y_A          161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-----------TLLNAVG-TNNLPGTIVV  228 (331)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-----------EEEEEEE-CSSCCCCEEE
T ss_pred             CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-----------ceeeecc-CCCCCceEEE
Confidence            44311   1222345568999999999976777778999999999874431           0122222 2356788999


Q ss_pred             ccCCCeEEEEEeCCCeEee
Q psy4578         838 NPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       838 spdg~~Llasgs~Dg~IrI  856 (860)
                      +|+|+++++++..++.|.+
T Consensus       229 spdg~~l~v~~~~~~~i~~  247 (331)
T 3u4y_A          229 SRDGSTVYVLTESTVDVFN  247 (331)
T ss_dssp             CTTSSEEEEECSSEEEEEE
T ss_pred             CCCCCEEEEEEcCCCEEEE
Confidence            9999988877776666654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.59  E-value=5.4e-14  Score=164.97  Aligned_cols=219  Identities=11%  Similarity=0.125  Sum_probs=155.9

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEc--CCCCcccCeeeccCCCCCeeEEEEcc---
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDT--RSHNVSKPSHTVDAHTAEVNCLSFNP---  677 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~--~~~~~~~~~~~~~~h~~~V~~l~~sp---  677 (860)
                      .+.+|+....++...+.....+.+++|+| +++++++++.|++|++||+  .++   +.+..+. +...+..++|+|   
T Consensus       160 ~V~v~D~~t~~~~~~i~~g~~~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~---~~~~~i~-~g~~p~~va~sp~~~  234 (543)
T 1nir_A          160 QIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEP---TKVAEIK-IGIEARSVESSKFKG  234 (543)
T ss_dssp             EEEEEETTTCCEEEEEECSTTEEEEEECT-TSCEEEEEETTSEEEEEETTSSSC---EEEEEEE-CCSEEEEEEECCSTT
T ss_pred             eEEEEECCCceEEEEEecCcccceEEECC-CCCEEEEECCCCeEEEEECcCCCC---cEEEEEe-cCCCcceEEeCCCcC
Confidence            34555666666655555333488999999 7889999999999999999  553   4455554 455689999999   


Q ss_pred             -CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC----------C-CCCeEEEEEcCCCCcEEE
Q psy4578         678 -YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA----------H-TAEVNCLSFNPYSEYILA  745 (860)
Q Consensus       678 -~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~----------h-~~~I~sl~~sp~g~~lla  745 (860)
                       +|+++++++..+++               |.+||..+.   +.+..+..          | ...+.++.++|++..+++
T Consensus       235 ~dg~~l~v~~~~~~~---------------v~v~D~~t~---~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v  296 (543)
T 1nir_A          235 YEDRYTIAGAYWPPQ---------------FAIMDGETL---EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  296 (543)
T ss_dssp             CTTTEEEEEEEESSE---------------EEEEETTTC---CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             CCCCEEEEEEccCCe---------------EEEEecccc---ccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence             99975555556787               999998876   44444432          2 237899999999988888


Q ss_pred             EeeCCCcEEEEeCCCCceee-EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEE
Q psy4578         746 TGSADKTVALWDLRNLKLKL-HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI  824 (860)
Q Consensus       746 sgs~Dg~I~IWDl~~~~~~~-~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~  824 (860)
                      +...+|.|.+||..+..... ... .+...+.+++|+|+|+++++++..+++|.+||..+++....+..          .
T Consensus       297 s~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~----------g  365 (543)
T 1nir_A          297 NVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV----------G  365 (543)
T ss_dssp             EETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC----------S
T ss_pred             EECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc----------C
Confidence            99999999999998765422 233 35677889999999998676777799999999998554322210          0


Q ss_pred             ecCccCceEEEEEccCCCeEEEEEe-CCCeEee
Q psy4578         825 HGGHTAKISDFSWNPNEPWVICSVS-EDNIMQK  856 (860)
Q Consensus       825 ~~~h~~~I~~i~~spdg~~Llasgs-~Dg~IrI  856 (860)
                      ...|.+....+ ++|++..++++++ .|++|.+
T Consensus       366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v  397 (543)
T 1nir_A          366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISL  397 (543)
T ss_dssp             SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEE
T ss_pred             CCCCCCCCccc-CCCCCccEEEeccCCCceEEE
Confidence            01255444333 5787555777776 5777774

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.57  E-value=2.3e-13  Score=147.65  Aligned_cols=195  Identities=8%  Similarity=0.109  Sum_probs=140.4

Q ss_pred             eEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCc
Q psy4578         627 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQK  706 (860)
Q Consensus       627 v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~  706 (860)
                      ..|.+.++..+++++.++.|.+||..+++.   ...+..+...+ +++|+|+|+++++++..++.               
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~---------------   63 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI---LNQITLGYDFV-DTAITSDCSNVVVTSDFCQT---------------   63 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCE---EEEEECCCCEE-EEEECSSSCEEEEEESTTCE---------------
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccce---eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCe---------------
Confidence            345555667788999999999999988543   34444455566 99999999987777766777               


Q ss_pred             EEEEeCCCCCCCCC-eeeecCCCCCeEEEEEcCCCCcEEEEeeCC-C--cEEEEeCCCCceeeEEeccCCCceEEEEEcC
Q psy4578         707 LMIWDTRSHNVSKP-SHTVDAHTAEVNCLSFNPYSEYILATGSAD-K--TVALWDLRNLKLKLHSFESHKDEIFQVQWSP  782 (860)
Q Consensus       707 I~iwDl~~~~~~~~-~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g--~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp  782 (860)
                      |.+||..++   .. ...+..+.....+++|+|+|++ ++++..+ +  .|.+||+.++.. +..+.. .....+++|+|
T Consensus        64 i~~~d~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~sp  137 (331)
T 3u4y_A           64 LVQIETQLE---PPKVVAIQEGQSSMADVDITPDDQF-AVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISP  137 (331)
T ss_dssp             EEEEECSSS---SCEEEEEEECSSCCCCEEECTTSSE-EEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECT
T ss_pred             EEEEECCCC---ceeEEecccCCCCccceEECCCCCE-EEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECC
Confidence            999999886   33 5555556666655999999997 5555555 3  899999998876 555553 45578999999


Q ss_pred             CCCCEEEEEECCCc-EEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         783 HNETILASSGTDRR-LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       783 ~g~~lL~tgs~Dg~-I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|+++++++..++. |.+|++.........        . .... .....+..++|+|+|+++++++..++.|++
T Consensus       138 dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~--------~-~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  202 (331)
T 3u4y_A          138 NGNGLILIDRSSANTVRRFKIDADGVLFDT--------G-QEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGI  202 (331)
T ss_dssp             TSSCEEEEEETTTTEEEEEEECTTCCEEEE--------E-EEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCCEEEEEecCCCceEEEEEECCCCcEeec--------C-Cccc-cCCCCccceEECCCCCEEEEEeCCCCeEEE
Confidence            99987777777788 999999863321110        0 1111 234557899999999988888888888775

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.56  E-value=6e-13  Score=146.77  Aligned_cols=238  Identities=8%  Similarity=0.050  Sum_probs=149.9

Q ss_pred             cceeecccceeEEEEeeccchhhhh--hhhhcccceeeeEeeccCCcEEEEEeCC----CcEEEEEcCCC-CcccCeeec
Q psy4578         591 QGYFKGTHHIEEVMYLENKTRAQIC--QLLDKLRLLIDVAWHLLHESLFGSVADD----QKLMIWDTRSH-NVSKPSHTV  663 (860)
Q Consensus       591 ~G~~~Gs~~l~~il~l~n~~~~~l~--~l~~~~~~V~~v~~sp~~~~~lasgs~D----G~I~IWd~~~~-~~~~~~~~~  663 (860)
                      .|.+.+..+....++..+...+++.  ... +...+..++|+| +++++++++.+    |.|.+|++... .....+...
T Consensus        18 vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~   95 (361)
T 3scy_A           18 VGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ   95 (361)
T ss_dssp             EEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE
T ss_pred             EEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe
Confidence            4555443333333443443333322  222 566788999999 67777777775    89999998753 112333444


Q ss_pred             cCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee---c--------CCCCCeE
Q psy4578         664 DAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV---D--------AHTAEVN  732 (860)
Q Consensus       664 ~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~---~--------~h~~~I~  732 (860)
                      ..+......+++  ++++++++...++.               +.+|++........+...   .        .+...+.
T Consensus        96 ~~~~~~p~~~~~--dg~~l~~~~~~~~~---------------v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~  158 (361)
T 3scy_A           96 KTMGADPCYLTT--NGKNIVTANYSGGS---------------ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH  158 (361)
T ss_dssp             ECSSSCEEEEEE--CSSEEEEEETTTTE---------------EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE
T ss_pred             ccCCCCcEEEEE--CCCEEEEEECCCCE---------------EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce
Confidence            445566778888  78876666656777               889988754322222111   1        1233468


Q ss_pred             EEEEcCCCCcEEEEeeCCCcEEEEeCCCCce------e------eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEE
Q psy4578         733 CLSFNPYSEYILATGSADKTVALWDLRNLKL------K------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW  800 (860)
Q Consensus       733 sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~------~------~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iW  800 (860)
                      +++|+|+|+++++++..++.|.+|++.....      .      ......+.....+++|+|+|+++++++..++.|.+|
T Consensus       159 ~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  238 (361)
T 3scy_A          159 CVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAF  238 (361)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEE
Confidence            8999999998677777789999998875431      0      112233456688999999999755555478999999


Q ss_pred             ECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC-CCeEee
Q psy4578         801 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE-DNIMQK  856 (860)
Q Consensus       801 dl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~-Dg~IrI  856 (860)
                      ++.++.... .        ..+.....+.....+++|+|||+++++++.. ++.|.+
T Consensus       239 ~~~~g~~~~-~--------~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v  286 (361)
T 3scy_A          239 RYADGMLDE-I--------QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI  286 (361)
T ss_dssp             EEETTEEEE-E--------EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred             EecCCceEE-e--------EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence            988532110 0        0111222344557899999999987777776 676665

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.55  E-value=3.1e-13  Score=147.53  Aligned_cols=201  Identities=9%  Similarity=0.078  Sum_probs=145.8

Q ss_pred             ccceeeeEeeccCCcEEEEEeC-------CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         621 LRLLIDVAWHLLHESLFGSVAD-------DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~-------DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      ...+..++|+| +++.+++++.       ++.|.+||..+++.   ...+.. ...+.+++|+|+|+++++++..++.  
T Consensus        40 ~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~---~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~--  112 (353)
T 3vgz_A           40 GKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTLEV---TQAIHN-DLKPFGATINNTTQTLWFGNTVNSA--  112 (353)
T ss_dssp             ESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTCCE---EEEEEE-SSCCCSEEEETTTTEEEEEETTTTE--
T ss_pred             ccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCCeE---EEEEec-CCCcceEEECCCCCEEEEEecCCCE--
Confidence            35678999999 5555555553       67899999988543   333322 3457889999999987777777777  


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCC---------CeEEEEEcCCCCcEEEEe-eCCCcEEEEeCCCCce
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA---------EVNCLSFNPYSEYILATG-SADKTVALWDLRNLKL  763 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~---------~I~sl~~sp~g~~llasg-s~Dg~I~IWDl~~~~~  763 (860)
                                   |.+||..++   +.+..+..+..         .+.+++|+|+|+++++++ +.++.|.+||..+++.
T Consensus       113 -------------v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~  176 (353)
T 3vgz_A          113 -------------VTAIDAKTG---EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL  176 (353)
T ss_dssp             -------------EEEEETTTC---CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE
T ss_pred             -------------EEEEeCCCC---eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce
Confidence                         999999876   44444444332         278899999999755555 3588999999998876


Q ss_pred             eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578         764 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW  843 (860)
Q Consensus       764 ~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~  843 (860)
                       ...+..+...+.+++|+|+|++ +++++.++.|.+||..+.........          ...++...+.+++|+|+|++
T Consensus       177 -~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~i~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~~~s~dg~~  244 (353)
T 3vgz_A          177 -KTAIQNTGKMSTGLALDSEGKR-LYTTNADGELITIDTADNKILSRKKL----------LDDGKEHFFINISLDTARQR  244 (353)
T ss_dssp             -EEEECCCCTTCCCCEEETTTTE-EEEECTTSEEEEEETTTTEEEEEEEC----------CCSSSCCCEEEEEEETTTTE
T ss_pred             -EEEecCCCCccceEEECCCCCE-EEEEcCCCeEEEEECCCCeEEEEEEc----------CCCCCCcccceEEECCCCCE
Confidence             6666656666889999999986 67778899999999987543322111          01134567889999999998


Q ss_pred             EEEEEeCCCeEee
Q psy4578         844 VICSVSEDNIMQK  856 (860)
Q Consensus       844 Llasgs~Dg~IrI  856 (860)
                      +++++..++.|.+
T Consensus       245 l~~~~~~~~~v~~  257 (353)
T 3vgz_A          245 AFITDSKAAEVLV  257 (353)
T ss_dssp             EEEEESSSSEEEE
T ss_pred             EEEEeCCCCEEEE
Confidence            8888777677764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.54  E-value=2.3e-13  Score=159.56  Aligned_cols=190  Identities=13%  Similarity=0.171  Sum_probs=145.5

Q ss_pred             EeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578         628 AWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL  707 (860)
Q Consensus       628 ~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I  707 (860)
                      .|+| ++.++++++.|++|.+||..++   +.+..+..+.. +.+++|+|+|++ +++++.|++               |
T Consensus       144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~---~~~~~i~~g~~-~~~v~~spdg~~-l~v~~~d~~---------------V  202 (543)
T 1nir_A          144 DLDL-PNLFSVTLRDAGQIALVDGDSK---KIVKVIDTGYA-VHISRMSASGRY-LLVIGRDAR---------------I  202 (543)
T ss_dssp             CCCG-GGEEEEEEGGGTEEEEEETTTC---CEEEEEECSTT-EEEEEECTTSCE-EEEEETTSE---------------E
T ss_pred             ccCC-CCEEEEEEcCCCeEEEEECCCc---eEEEEEecCcc-cceEEECCCCCE-EEEECCCCe---------------E
Confidence            3777 6788999999999999999885   44555553222 889999999996 677777788               9


Q ss_pred             EEEeC--CCCCCCCCeeeecCCCCCeEEEEEcC----CCCcEEEEeeCCCcEEEEeCCCCceeeEEecc----------C
Q psy4578         708 MIWDT--RSHNVSKPSHTVDAHTAEVNCLSFNP----YSEYILATGSADKTVALWDLRNLKLKLHSFES----------H  771 (860)
Q Consensus       708 ~iwDl--~~~~~~~~~~~~~~h~~~I~sl~~sp----~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~----------h  771 (860)
                      .+||+  .++   +.+..+. +...+.+++|+|    +|+++++++..+++|.+||..+.+. +..+..          |
T Consensus       203 ~v~D~~~~t~---~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~  277 (543)
T 1nir_A          203 DMIDLWAKEP---TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYH  277 (543)
T ss_dssp             EEEETTSSSC---EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEE
T ss_pred             EEEECcCCCC---cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccc
Confidence            99999  554   4455555 456789999999    9997444444689999999998876 555543          2


Q ss_pred             -CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578         772 -KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       772 -~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~  850 (860)
                       ...+.++.++|+++.++++...+|.|.+||+.+.....            +... .+...+.+++|+|+|+++++++..
T Consensus       278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~------------~~~i-~~~~~~~~~~~spdg~~l~va~~~  344 (543)
T 1nir_A          278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT------------VTSI-GAAPFLHDGGWDSSHRYFMTAANN  344 (543)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE------------EEEE-ECCSSCCCEEECTTSCEEEEEEGG
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce------------eEEe-ccCcCccCceECCCCCEEEEEecC
Confidence             23789999999998888888899999999998744321            1111 245668889999999998888888


Q ss_pred             CCeEee
Q psy4578         851 DNIMQK  856 (860)
Q Consensus       851 Dg~IrI  856 (860)
                      ++.|.+
T Consensus       345 ~~~v~v  350 (543)
T 1nir_A          345 SNKVAV  350 (543)
T ss_dssp             GTEEEE
T ss_pred             CCeEEE
Confidence            888775

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.52  E-value=1.3e-13  Score=166.65  Aligned_cols=212  Identities=8%  Similarity=0.008  Sum_probs=144.1

Q ss_pred             EEEeeccchhhhhhhhhccc----ceeeeEeeccCCcEEEEEeCC---------CcEEEEEcCCCCcccCeeeccCCCCC
Q psy4578         603 VMYLENKTRAQICQLLDKLR----LLIDVAWHLLHESLFGSVADD---------QKLMIWDTRSHNVSKPSHTVDAHTAE  669 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~----~V~~v~~sp~~~~~lasgs~D---------G~I~IWd~~~~~~~~~~~~~~~h~~~  669 (860)
                      .+++|+...++...+..++.    .|.+++|+| +++.+++++.+         +.+.+||+.++.. ..+....+|...
T Consensus        38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~  115 (723)
T 1xfd_A           38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAK  115 (723)
T ss_dssp             CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCC
T ss_pred             CEEEEECCCCcEEEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCcccccc
Confidence            46677777766655555543    399999999 78888888764         7888999988643 223333445556


Q ss_pred             eeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCC------------------e
Q psy4578         670 VNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAE------------------V  731 (860)
Q Consensus       670 V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~------------------I  731 (860)
                      +.+++|+|||+. ++.++. +.               |++||+.++.   .......+...                  +
T Consensus       116 ~~~~~~SPdG~~-la~~~~-~~---------------i~~~~~~~g~---~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~  175 (723)
T 1xfd_A          116 LQYAGWGPKGQQ-LIFIFE-NN---------------IYYCAHVGKQ---AIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (723)
T ss_dssp             CSBCCBCSSTTC-EEEEET-TE---------------EEEESSSSSC---CEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             ccccEECCCCCE-EEEEEC-Ce---------------EEEEECCCCc---eEEEecCCCCCceECcccceeEEEEeccCc
Confidence            899999999997 566654 55               9999998763   33333333332                  3


Q ss_pred             EEEEEcCCCCcEEEEeeCCC----------------------------------cEEEEeCCCCceeeEEeccC------
Q psy4578         732 NCLSFNPYSEYILATGSADK----------------------------------TVALWDLRNLKLKLHSFESH------  771 (860)
Q Consensus       732 ~sl~~sp~g~~llasgs~Dg----------------------------------~I~IWDl~~~~~~~~~~~~h------  771 (860)
                      .+++|+|+|++ |++++.|+                                  .|++||+.++.. ...+..+      
T Consensus       176 ~~~~~SpDg~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~  253 (723)
T 1xfd_A          176 IAHWWSPDGTR-LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMR  253 (723)
T ss_dssp             EEEEECTTSSE-EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGS
T ss_pred             ceEEECCCCCE-EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce-eEEeeCCccCCCc
Confidence            78999999996 66665442                                  799999988764 3444443      


Q ss_pred             CCceEEEEEcCCCCCEEEEEE----CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCce----EEEEEccCCCe
Q psy4578         772 KDEIFQVQWSPHNETILASSG----TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI----SDFSWNPNEPW  843 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs----~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I----~~i~~spdg~~  843 (860)
                      ...+.+++|+|||+. +++.+    .++.|++||+.++......             ...+.+.+    ..++|+|||++
T Consensus       254 ~~~~~~~~~SpDg~~-l~~~~~~~~~~~~i~~~d~~~g~~~~~~-------------~~~~~~~~~~~~~~~~~spdg~~  319 (723)
T 1xfd_A          254 EYYITMVKWATSTKV-AVTWLNRAQNVSILTLCDATTGVCTKKH-------------EDESEAWLHRQNEEPVFSKDGRK  319 (723)
T ss_dssp             SEEEEEEEESSSSEE-EEEEEETTSCEEEEEEEETTTCCEEEEE-------------EEECSSCCCCCCCCCEECTTSCS
T ss_pred             cceeEEEEEeCCCeE-EEEEEcCCCCeEEEEEEeCCCCcceEEE-------------EeccCCEEeccCCCceEcCCCCe
Confidence            567899999999985 54543    2367999999874432110             01122333    37899999998


Q ss_pred             EEEE-EeCCC
Q psy4578         844 VICS-VSEDN  852 (860)
Q Consensus       844 Llas-gs~Dg  852 (860)
                      +++. +..++
T Consensus       320 l~~~~~~~~~  329 (723)
T 1xfd_A          320 FFFIRAIPQG  329 (723)
T ss_dssp             EEEEEEECCS
T ss_pred             EEEEEecccC
Confidence            7765 66676

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.52  E-value=1.4e-13  Score=167.12  Aligned_cols=193  Identities=8%  Similarity=0.092  Sum_probs=135.4

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN  702 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~  702 (860)
                      .|.+++|+| +++.+++++. +.|.+||+.++.. .....+..|...+.+++|+|||++ ++.++. +.           
T Consensus       110 ~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~-~~~~~l~~~~~~~~~~~~SPDG~~-la~~~~-~~-----------  173 (741)
T 2ecf_A          110 GIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSPKGGF-VSFIRG-RN-----------  173 (741)
T ss_dssp             ESCCCEECT-TSSEEEEEET-TEEEEEESSSCST-TSCCBCCCSSSCEEEEEECTTSSE-EEEEET-TE-----------
T ss_pred             CcceeEECC-CCCEEEEEeC-CcEEEEECCCCCc-ceEEEcccCCcccccccCCCCCCE-EEEEeC-Cc-----------
Confidence            489999999 7888888776 9999999987510 023455677888999999999996 555553 45           


Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCCCC----------------eEEEEEcCCCCcEEEEeeCCC---------------
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHTAE----------------VNCLSFNPYSEYILATGSADK---------------  751 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~----------------I~sl~~sp~g~~llasgs~Dg---------------  751 (860)
                          |++||+.++.   .......+...                +.+++|+|+|++ |++++.|+               
T Consensus       174 ----i~~~d~~~g~---~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~  245 (741)
T 2ecf_A          174 ----LWVIDLASGR---QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADR  245 (741)
T ss_dssp             ----EEEEETTTTE---EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSC
T ss_pred             ----EEEEecCCCC---EEEeccCCccceeccccceeeeeccccccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCc
Confidence                9999988752   22222222221                478999999997 66666554               


Q ss_pred             ------------------cEEEEeCCC-CceeeEEec--cCCCceEEEEEcCCCCCEEEEEE----CCCcEEEEECCCCC
Q psy4578         752 ------------------TVALWDLRN-LKLKLHSFE--SHKDEIFQVQWSPHNETILASSG----TDRRLHVWDLSKIG  806 (860)
Q Consensus       752 ------------------~I~IWDl~~-~~~~~~~~~--~h~~~V~~l~fsp~g~~lL~tgs----~Dg~I~iWdl~~~~  806 (860)
                                        .|++||+.+ +.. .....  .|...+.+++| |+|+++++++.    .++.|++||+.++.
T Consensus       246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~  323 (741)
T 2ecf_A          246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ  323 (741)
T ss_dssp             EEEEEEECCBTTSCCCEEEEEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred             ccceEeecCCCCCCCCeeEEEEEECCCCCce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence                              789999988 764 22222  47788999999 99997554443    35789999998754


Q ss_pred             cccccccccCCCCccEEEecCccC----ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         807 EEQSTEDAEDGPPELLFIHGGHTA----KISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       807 ~~~~~~~~~~~~~~~i~~~~~h~~----~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ..              .....+..    .+.+++|+|||+ ++++++.|+.++|
T Consensus       324 ~~--------------~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l  362 (741)
T 2ecf_A          324 QR--------------VLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHL  362 (741)
T ss_dssp             EE--------------EEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEE
T ss_pred             eE--------------EEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEE
Confidence            32              11112221    456889999999 6778888886654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.52  E-value=1.4e-12  Score=143.77  Aligned_cols=207  Identities=11%  Similarity=0.161  Sum_probs=134.3

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec-----------cCCCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV-----------DAHTAEVNCLSFNPYSEYILATGSADK  690 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~-----------~~h~~~V~~l~~sp~g~~llasgs~Dg  690 (860)
                      .....+++  ++..++++...++.|.+|++............           ..+...+.+++|+|+|+++++++..++
T Consensus       100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  177 (361)
T 3scy_A          100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD  177 (361)
T ss_dssp             SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT
T ss_pred             CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC
Confidence            45666666  24444444457899999999753222211111           112334688999999998777766677


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCC------CCC----eeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNV------SKP----SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN  760 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~------~~~----~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~  760 (860)
                      .               |.+|++.....      ...    ......+.....+++|+|+|+++++++..++.|.+||+.+
T Consensus       178 ~---------------v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~  242 (361)
T 3scy_A          178 Q---------------IHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD  242 (361)
T ss_dssp             E---------------EEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred             E---------------EEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence            6               99998875431      100    1112334566889999999997555555799999999986


Q ss_pred             Ccee-eEEe---ccCCCceEEEEEcCCCCCEEEEEEC-CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEE
Q psy4578         761 LKLK-LHSF---ESHKDEIFQVQWSPHNETILASSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF  835 (860)
Q Consensus       761 ~~~~-~~~~---~~h~~~V~~l~fsp~g~~lL~tgs~-Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i  835 (860)
                      +... +...   ..+.....+++|+|+|++++++... ++.|.+|++.....          ....+..... ...+.++
T Consensus       243 g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g----------~~~~~~~~~~-g~~~~~~  311 (361)
T 3scy_A          243 GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG----------TLTKVGYQLT-GIHPRNF  311 (361)
T ss_dssp             TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC----------CEEEEEEEEC-SSCCCEE
T ss_pred             CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC----------cEEEeeEecC-CCCCceE
Confidence            6431 2222   2334567899999999975555555 68999999963110          1112222322 4567899


Q ss_pred             EEccCCCeEEEEEeCCCeEee
Q psy4578         836 SWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       836 ~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|+|+|+++++++..++.|.+
T Consensus       312 ~~spdg~~l~~~~~~~~~v~v  332 (361)
T 3scy_A          312 IITPNGKYLLVACRDTNVIQI  332 (361)
T ss_dssp             EECTTSCEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEECCCCCEEE
Confidence            999999988877778888776

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.51  E-value=1.6e-13  Score=148.95  Aligned_cols=196  Identities=11%  Similarity=0.185  Sum_probs=130.3

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR  713 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~  713 (860)
                      ..++++++.|+.|++|++........+.. ..+...+.+++|+|+|+++++++..++.               |.+|++.
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~---------------v~~~~~~   68 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFR---------------VLAYRIA   68 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTE---------------EEEEEEC
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCe---------------EEEEEec
Confidence            44566668899999999964211222333 3467789999999999975544444477               9999987


Q ss_pred             --CCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc--eeeEEeccCCCceEEEEEcCCCCCEEE
Q psy4578         714 --SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILA  789 (860)
Q Consensus       714 --~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~~l~fsp~g~~lL~  789 (860)
                        ++. ...+..+..+. .+.+++|+|+|+++++++..++.|.+||+..+.  ....... ....+.+++|+|+|+++++
T Consensus        69 ~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~  145 (343)
T 1ri6_A           69 PDDGA-LTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWV  145 (343)
T ss_dssp             TTTCC-EEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEE
T ss_pred             CCCCc-eeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEE
Confidence              332 12333444333 789999999999756666668999999995322  1133333 3446889999999987554


Q ss_pred             EEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         790 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       790 tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++..++.|.+||+.+........        ...........+.+++|+|+|+++++++..++.+++
T Consensus       146 ~~~~~~~v~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~  204 (343)
T 1ri6_A          146 PALKQDRICLFTVSDDGHLVAQD--------PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDV  204 (343)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEE--------EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ecCCCCEEEEEEecCCCceeeec--------ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEE
Confidence            44489999999998622111000        001111223578899999999988888878887765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.49  E-value=1.2e-12  Score=141.63  Aligned_cols=217  Identities=9%  Similarity=0.039  Sum_probs=136.8

Q ss_pred             EEeeccchhhhhhhhhccc---ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-CC----CCCeeEEEE
Q psy4578         604 MYLENKTRAQICQLLDKLR---LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AH----TAEVNCLSF  675 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~---~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-~h----~~~V~~l~~  675 (860)
                      +++++....+....+....   .+.+++|+|++..++++++.++.|.+||+.+++.   ...+. ++    ...+.+++|
T Consensus        13 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~   89 (337)
T 1pby_B           13 LVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET---LGRIDLSTPEERVKSLFGAAL   89 (337)
T ss_dssp             EEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE---EEEEECCBTTEEEECTTCEEE
T ss_pred             EEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe---EeeEEcCCcccccccccceEE
Confidence            4455555555554444444   5889999995445667777789999999987543   33222 11    226788999


Q ss_pred             ccCCCeEEEEEeCCCceeeeccccccc--CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcE
Q psy4578         676 NPYSEYILATGSADKTQFEVEEEEEEN--YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTV  753 (860)
Q Consensus       676 sp~g~~llasgs~Dg~i~~~~~~~~~~--~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I  753 (860)
                      +|+|++++++....+.      .....  .++.|.+||+.++   +....+.. ...+.+++|+|+|++ ++++  ++.|
T Consensus        90 s~dg~~l~~~~~~~~~------~~~~~~~~~~~i~v~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~-l~~~--~~~i  156 (337)
T 1pby_B           90 SPDGKTLAIYESPVRL------ELTHFEVQPTRVALYDAETL---SRRKAFEA-PRQITMLAWARDGSK-LYGL--GRDL  156 (337)
T ss_dssp             CTTSSEEEEEEEEEEE------CSSCEEECCCEEEEEETTTT---EEEEEEEC-CSSCCCEEECTTSSC-EEEE--SSSE
T ss_pred             CCCCCEEEEEeccccc------ccccccccCceEEEEECCCC---cEEEEEeC-CCCcceeEECCCCCE-EEEe--CCeE
Confidence            9999975444321000      00000  1234999999775   33334433 456788899999997 4444  6789


Q ss_pred             EEEeCCCCceeeEEec----------------------------------------------------------------
Q psy4578         754 ALWDLRNLKLKLHSFE----------------------------------------------------------------  769 (860)
Q Consensus       754 ~IWDl~~~~~~~~~~~----------------------------------------------------------------  769 (860)
                      .+||+.++.. ...+.                                                                
T Consensus       157 ~~~d~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  235 (337)
T 1pby_B          157 HVMDPEAGTL-VEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEEETTTTEE-EEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             EEEECCCCcE-eeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence            9999887654 22221                                                                


Q ss_pred             --cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEE
Q psy4578         770 --SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS  847 (860)
Q Consensus       770 --~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llas  847 (860)
                        .+...+.+++|+|+|++ ++++  ++.|.+||+.+.+..              .... ....+.+++|+|+|+++++ 
T Consensus       236 ~~~~~~~~~~~~~s~dg~~-l~~~--~~~v~~~d~~~~~~~--------------~~~~-~~~~~~~~~~s~dg~~l~~-  296 (337)
T 1pby_B          236 VRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNASI--------------KRVP-LPHSYYSVNVSTDGSTVWL-  296 (337)
T ss_dssp             EEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEEE--------------EEEE-CSSCCCEEEECTTSCEEEE-
T ss_pred             cCCCCCceeeEEECCCCCE-EEEe--CCeEEEEECCCCcCc--------------ceec-CCCceeeEEECCCCCEEEE-
Confidence              11223556899999986 5555  789999998874322              2222 2245788999999997665 


Q ss_pred             EeCCCeEee
Q psy4578         848 VSEDNIMQK  856 (860)
Q Consensus       848 gs~Dg~IrI  856 (860)
                      ++.++.|++
T Consensus       297 ~~~~~~i~v  305 (337)
T 1pby_B          297 GGALGDLAA  305 (337)
T ss_dssp             ESBSSEEEE
T ss_pred             EcCCCcEEE
Confidence            466777765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.48  E-value=5.9e-13  Score=161.58  Aligned_cols=227  Identities=10%  Similarity=0.029  Sum_probs=150.6

Q ss_pred             EEEEeeccchh---hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCC---------
Q psy4578         602 EVMYLENKTRA---QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAE---------  669 (860)
Q Consensus       602 ~il~l~n~~~~---~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~---------  669 (860)
                      ..+++|+....   ....+..+...+.+++|+| +++.+++++ ++.|.+||+.++..   ......+...         
T Consensus       129 ~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~---~~~~~~~~~~~~~g~~~~v  203 (741)
T 2ecf_A          129 GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQ---MQLTADGSTTIGNGIAEFV  203 (741)
T ss_dssp             TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEE---EECCCCCCSSEEESCCCHH
T ss_pred             CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCE---EEeccCCccceecccccee
Confidence            34666776666   6666777778899999999 778888777 46999999987432   2222222221         


Q ss_pred             -------eeEEEEccCCCeEEEEEeCCC-ceeeec---------------ccccc--cCCCcEEEEeCCC-CCCCCCeee
Q psy4578         670 -------VNCLSFNPYSEYILATGSADK-TQFEVE---------------EEEEE--NYDQKLMIWDTRS-HNVSKPSHT  723 (860)
Q Consensus       670 -------V~~l~~sp~g~~llasgs~Dg-~i~~~~---------------~~~~~--~~dg~I~iwDl~~-~~~~~~~~~  723 (860)
                             +.+++|+|||+++ ++++.|+ .+..+.               ....+  .....|.+||+.+ ++. ..+..
T Consensus       204 ~~~~~~~~~~~~~SpDg~~l-~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~  281 (741)
T 2ecf_A          204 ADEEMDRHTGYWWAPDDSAI-AYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT-QWIDL  281 (741)
T ss_dssp             HHHHSCCCCSEEECTTSSCE-EEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC-EEECC
T ss_pred             eeeccccccceEECCCCCEE-EEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce-EEecC
Confidence                   4789999999974 4444433 221111               00001  1122588889887 632 11111


Q ss_pred             ecCCCCCeEEEEEcCCCCcEEEEee----CCCcEEEEeCCCCceeeEEeccCCC----ceEEEEEcCCCCCEEEEEECCC
Q psy4578         724 VDAHTAEVNCLSFNPYSEYILATGS----ADKTVALWDLRNLKLKLHSFESHKD----EIFQVQWSPHNETILASSGTDR  795 (860)
Q Consensus       724 ~~~h~~~I~sl~~sp~g~~llasgs----~Dg~I~IWDl~~~~~~~~~~~~h~~----~V~~l~fsp~g~~lL~tgs~Dg  795 (860)
                      ...|...+.+++| |+|+++++++.    .++.|++||+.++.. ...+..+..    .+.+++|+|+|+ ++++++.||
T Consensus       282 ~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g  358 (741)
T 2ecf_A          282 GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTG  358 (741)
T ss_dssp             CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTS
T ss_pred             CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCC
Confidence            1147788999999 99997444433    357899999998876 444444432    456899999998 688999999


Q ss_pred             cEEEEECCCCCcccccccccCCCCccEEEecCccCceEEE-EEccCCCeEEEEEeCCC
Q psy4578         796 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF-SWNPNEPWVICSVSEDN  852 (860)
Q Consensus       796 ~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i-~~spdg~~Llasgs~Dg  852 (860)
                      .+++|.+....             . ...+..|...|.++ .|+|+|+.++++++.++
T Consensus       359 ~~~l~~~~~~~-------------~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~  402 (741)
T 2ecf_A          359 FQHLYRIDSKG-------------K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIES  402 (741)
T ss_dssp             SCEEEEECSSS-------------C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSC
T ss_pred             ccEEEEEcCCC-------------C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCC
Confidence            88888876311             1 34455667778887 59999998888888776

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.48  E-value=1.9e-13  Score=165.33  Aligned_cols=202  Identities=10%  Similarity=0.153  Sum_probs=135.2

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCC---CeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTA---EVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~---~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      ..+.+++|+| ++.++++ +.||+|++||+.+++   ....+..|..   .|.+++|+|||++ +++++.++.++     
T Consensus        17 ~~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g~---~~~~~~~~~~~~~~v~~~~~SpDg~~-l~~~~~~~~~~-----   85 (723)
T 1xfd_A           17 IHDPEAKWIS-DTEFIYR-EQKGTVRLWNVETNT---STVLIEGKKIESLRAIRYEISPDREY-ALFSYNVEPIY-----   85 (723)
T ss_dssp             CCCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGCC---CEEEECTTTTTTTTCSEEEECTTSSE-EEEEESCCCCS-----
T ss_pred             ccccccEEcC-CCcEEEE-eCCCCEEEEECCCCc---EEEEeccccccccccceEEECCCCCE-EEEEecCccce-----
Confidence            3578999999 5666665 789999999998853   3444555554   4999999999997 66666654311     


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc----
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE----  774 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~----  774 (860)
                       ....++.+.+||+.+++. ..+....+|...+.+++|||+|+. ++.++. +.|++||+.++.. ......+...    
T Consensus        86 -~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~-la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~  160 (723)
T 1xfd_A           86 -QHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQ-LIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYN  160 (723)
T ss_dssp             -SSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTC-EEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEE
T ss_pred             -eecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCE-EEEEEC-CeEEEEECCCCce-EEEecCCCCCceEC
Confidence             112346699999998743 223333445556899999999996 767665 7999999998765 3333333332    


Q ss_pred             --------------eEEEEEcCCCCCEEEEEECCC----------------------------------cEEEEECCCCC
Q psy4578         775 --------------IFQVQWSPHNETILASSGTDR----------------------------------RLHVWDLSKIG  806 (860)
Q Consensus       775 --------------V~~l~fsp~g~~lL~tgs~Dg----------------------------------~I~iWdl~~~~  806 (860)
                                    +.+++|+|||+. |++++.|+                                  .|++||+.+..
T Consensus       161 g~~~~v~~ee~~~~~~~~~~SpDg~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~  239 (723)
T 1xfd_A          161 GLSDWLYEEEILKTHIAHWWSPDGTR-LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT  239 (723)
T ss_dssp             EECCHHHHHTTSSSSEEEEECTTSSE-EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred             cccceeEEEEeccCcceEEECCCCCE-EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence                          378999999997 55665432                                  67888877644


Q ss_pred             cccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578         807 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       807 ~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                      ....+...        .....+...+.+++|+|||++++++.
T Consensus       240 ~~~~l~~~--------~~~~~~~~~~~~~~~SpDg~~l~~~~  273 (723)
T 1xfd_A          240 HDLEMMPP--------DDPRMREYYITMVKWATSTKVAVTWL  273 (723)
T ss_dssp             CCEECCCC--------CCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred             eeEEeeCC--------ccCCCccceeEEEEEeCCCeEEEEEE
Confidence            21111100        00112356789999999999654443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.48  E-value=3.1e-13  Score=163.18  Aligned_cols=230  Identities=11%  Similarity=0.083  Sum_probs=151.8

Q ss_pred             EEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCC-----CCcccCeeeccCCCC--------
Q psy4578         602 EVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRS-----HNVSKPSHTVDAHTA--------  668 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~-----~~~~~~~~~~~~h~~--------  668 (860)
                      ..+++|+....+...+..+...+.+++|+| +++.++++ .|+.|.+||+.+     ++..   .....+..        
T Consensus       101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~---~~~~~~~~~~~~g~~~  175 (706)
T 2z3z_A          101 GGLVGFDMLARKVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAI---AVTIDGTETLVYGQAV  175 (706)
T ss_dssp             TEEEEEETTTTEEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCE---ESCSCCBTTEEESSCC
T ss_pred             CEEEEEECCCCceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcE---EeccCCCCCeEcccch
Confidence            356677776666666666677899999999 67777775 679999999987     5331   21222222        


Q ss_pred             ------CeeEEEEccCCCeEEEEEeCCCceeeeccc-----------------ccccCCCcEEEEeCCCCCCCCCeeeec
Q psy4578         669 ------EVNCLSFNPYSEYILATGSADKTQFEVEEE-----------------EEENYDQKLMIWDTRSHNVSKPSHTVD  725 (860)
Q Consensus       669 ------~V~~l~~sp~g~~llasgs~Dg~i~~~~~~-----------------~~~~~dg~I~iwDl~~~~~~~~~~~~~  725 (860)
                            .+.++.|+|||++++.++..+..+..+...                 .....++.|.+||+.++.. ..+....
T Consensus       176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~  254 (706)
T 2z3z_A          176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGE  254 (706)
T ss_dssp             GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCS
T ss_pred             hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCC
Confidence                  258999999999744444232222111111                 0112346799999987632 1111122


Q ss_pred             CCCCCeEEEEEcCCCCcEEEEeeCCC-----cEEEEeCCCCceeeEEec-cCCC---ceEEEEEcC--CCCCEEEEEECC
Q psy4578         726 AHTAEVNCLSFNPYSEYILATGSADK-----TVALWDLRNLKLKLHSFE-SHKD---EIFQVQWSP--HNETILASSGTD  794 (860)
Q Consensus       726 ~h~~~I~sl~~sp~g~~llasgs~Dg-----~I~IWDl~~~~~~~~~~~-~h~~---~V~~l~fsp--~g~~lL~tgs~D  794 (860)
                      .|...+.+++|+|+|++ +++++.++     .|++||+.++........ .+..   .+.+++|+|  +|+ ++++++.|
T Consensus       255 ~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~  332 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDENI-LYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRD  332 (706)
T ss_dssp             CTTCEEEEEEECTTSSE-EEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTT
T ss_pred             CCceeEeeEEEECCCCE-EEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccC
Confidence            56778999999999996 66666564     899999998833122221 2222   246789999  998 58888899


Q ss_pred             CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE-EEEccCCCeEEEEEeCCC
Q psy4578         795 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD-FSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       795 g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~-i~~spdg~~Llasgs~Dg  852 (860)
                      |.+++|++...             ...+..+..|...+.+ ++|+|+|+.++++++.++
T Consensus       333 g~~~l~~~~~~-------------~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~  378 (706)
T 2z3z_A          333 GWNHLYLYDTT-------------GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS  378 (706)
T ss_dssp             SSCEEEEEETT-------------SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred             CccEEEEEECC-------------CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence            99999987631             1223444566677876 799999998888887775

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.47  E-value=1.8e-12  Score=140.95  Aligned_cols=222  Identities=8%  Similarity=-0.005  Sum_probs=139.3

Q ss_pred             EEEeeccchhhhhhhhhccc--ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC------CCCeeEEE
Q psy4578         603 VMYLENKTRAQICQLLDKLR--LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH------TAEVNCLS  674 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~--~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h------~~~V~~l~  674 (860)
                      .+++|+....+....+....  .+..++|+|++..+++++..++.|.+||+.+++   ....+...      ...+.+++
T Consensus        22 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~---~~~~~~~~~~~~~~~~~~~~~~   98 (349)
T 1jmx_B           22 NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK---NTFHANLSSVPGEVGRSMYSFA   98 (349)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEESCCSTTEEEECSSCEE
T ss_pred             eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc---EEEEEEcccccccccccccceE
Confidence            35556655555554444444  688999999544456677788999999998753   23333222      22378899


Q ss_pred             EccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEE
Q psy4578         675 FNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVA  754 (860)
Q Consensus       675 ~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~  754 (860)
                      |+|+|++ +++++.+...   ........++.|.+||+.++.....+.... +...+.+++|+|+|+ +++ ++  +.|.
T Consensus        99 ~spdg~~-l~~~~~~~~~---~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~  169 (349)
T 1jmx_B           99 ISPDGKE-VYATVNPTQR---LNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIY  169 (349)
T ss_dssp             ECTTSSE-EEEEEEEEEE---CSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEE
T ss_pred             ECCCCCE-EEEEcccccc---cccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEE
Confidence            9999997 4444433000   000000112349999998754334344444 344688999999998 565 33  3499


Q ss_pred             EEeCCCCceeeEEeccCC--------------------------------------------------------------
Q psy4578         755 LWDLRNLKLKLHSFESHK--------------------------------------------------------------  772 (860)
Q Consensus       755 IWDl~~~~~~~~~~~~h~--------------------------------------------------------------  772 (860)
                      +||..+++. ...+..+.                                                              
T Consensus       170 ~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (349)
T 1jmx_B          170 KMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ  248 (349)
T ss_dssp             EECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE
T ss_pred             EEeCCCCce-eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec
Confidence            999988765 33332221                                                              


Q ss_pred             ------CceEEEEEcC-CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEE
Q psy4578         773 ------DEIFQVQWSP-HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI  845 (860)
Q Consensus       773 ------~~V~~l~fsp-~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Ll  845 (860)
                            ..+.+++|+| +|+. ++++  ++.|.+||+.+.+..              .... ....+.+++|+|+|++++
T Consensus       249 ~~~~~~~~~~~~~~sp~dg~~-l~~~--~~~v~~~d~~~~~~~--------------~~~~-~~~~~~~~~~s~dg~~l~  310 (349)
T 1jmx_B          249 EFADLTELYFTGLRSPKDPNQ-IYGV--LNRLAKYDLKQRKLI--------------KAAN-LDHTYYCVAFDKKGDKLY  310 (349)
T ss_dssp             EEEECSSCEEEEEECSSCTTE-EEEE--ESEEEEEETTTTEEE--------------EEEE-CSSCCCEEEECSSSSCEE
T ss_pred             ccccCCCcceeeEecCCCCCE-EEEE--cCeEEEEECccCeEE--------------EEEc-CCCCccceEECCCCCEEE
Confidence                  1355678889 9986 5555  889999999874322              2221 223467899999999766


Q ss_pred             EEEeCCCeEee
Q psy4578         846 CSVSEDNIMQK  856 (860)
Q Consensus       846 asgs~Dg~IrI  856 (860)
                      + ++.++.|++
T Consensus       311 ~-~~~~~~v~v  320 (349)
T 1jmx_B          311 L-GGTFNDLAV  320 (349)
T ss_dssp             E-ESBSSEEEE
T ss_pred             E-ecCCCeEEE
Confidence            5 566777765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.46  E-value=3.5e-13  Score=159.08  Aligned_cols=205  Identities=12%  Similarity=0.071  Sum_probs=141.9

Q ss_pred             eccchhhhhhhhhcc-cceeeeEeeccCCcEEEEEeC---CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         607 ENKTRAQICQLLDKL-RLLIDVAWHLLHESLFGSVAD---DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       607 ~n~~~~~l~~l~~~~-~~V~~v~~sp~~~~~lasgs~---DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      |....+...++..+. ..+.+++|+| + .++++++.   +...++|.+......... .+... ..+...+|+|+|+.+
T Consensus        49 w~~~~g~~~~lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~  124 (582)
T 3o4h_A           49 YLYDGGETVKLNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAV  124 (582)
T ss_dssp             EEEETTEEEECCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCE
T ss_pred             EEEcCCCcEeeecccccccccccCCC-C-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeE
Confidence            334556666666666 5899999998 4 77777765   556677766541001112 22222 234577899998765


Q ss_pred             EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC----CcEEEEeC
Q psy4578         683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD----KTVALWDL  758 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D----g~I~IWDl  758 (860)
                      +++.+.++.               +.+||+.+++   . ..+..+..  .+++|+|+|+. +++++.+    +.|++||+
T Consensus       125 ~~~s~~~~~---------------~~l~d~~~g~---~-~~l~~~~~--~~~~~spDG~~-la~~~~~~~~~~~i~~~d~  182 (582)
T 3o4h_A          125 VFTGATEDR---------------VALYALDGGG---L-RELARLPG--FGFVSDIRGDL-IAGLGFFGGGRVSLFTSNL  182 (582)
T ss_dssp             EEEEECSSC---------------EEEEEEETTE---E-EEEEEESS--CEEEEEEETTE-EEEEEEEETTEEEEEEEET
T ss_pred             EEEecCCCC---------------ceEEEccCCc---E-EEeecCCC--ceEEECCCCCE-EEEEEEcCCCCeEEEEEcC
Confidence            555444444               5699998762   2 22222333  78999999996 7766666    77999999


Q ss_pred             CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCC--cEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEE
Q psy4578         759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  836 (860)
Q Consensus       759 ~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg--~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~  836 (860)
                      .++..  ..+..|...+.+++|+|||+. |++++.+|  .|++||+.++...               ...+|...+.+++
T Consensus       183 ~~g~~--~~l~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~i~~~d~~~~~~~---------------~~~~~~~~~~~~~  244 (582)
T 3o4h_A          183 SSGGL--RVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVE---------------DLELPSKDFSSYR  244 (582)
T ss_dssp             TTCCC--EEECCSSCEEEEEEECTTSCE-EEEEECSSCEEEEEECTTTCCEE---------------ECCCSCSHHHHHC
T ss_pred             CCCCc--eEeecCCCccccceECCCCCE-EEEccCCCeeEEEEEcCCCCcEE---------------EccCCCcChhhhh
Confidence            88774  467788899999999999996 66888888  8999999874332               3345555555566


Q ss_pred             --------EccCCCeEEEEEeCCCeEee
Q psy4578         837 --------WNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       837 --------~spdg~~Llasgs~Dg~IrI  856 (860)
                              |+||| .++++++.|+.+++
T Consensus       245 ~~~~~~~~~spdg-~~~~~~~~~g~~~l  271 (582)
T 3o4h_A          245 PTAITWLGYLPDG-RLAVVARREGRSAV  271 (582)
T ss_dssp             CSEEEEEEECTTS-CEEEEEEETTEEEE
T ss_pred             hccccceeEcCCC-cEEEEEEcCCcEEE
Confidence                    99999 58889999998876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.44  E-value=2.1e-12  Score=163.30  Aligned_cols=183  Identities=12%  Similarity=0.100  Sum_probs=141.5

Q ss_pred             cceeeeEee-ccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCC-CeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         622 RLLIDVAWH-LLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTA-EVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       622 ~~V~~v~~s-p~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~-~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      ..+.+++|+ | ++..+++++ ++.|.+|+..++.    ...+..|.. .+.+++|+ +|+. ++.++.++.        
T Consensus       296 ~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~s-dg~~-l~~~s~~~~--------  359 (1045)
T 1k32_A          296 PSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTY----VLKVPEPLRIRYVRRGGD-TKVA-FIHGTREGD--------  359 (1045)
T ss_dssp             GGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSB----EEECSCCSCEEEEEECSS-SEEE-EEEEETTEE--------
T ss_pred             cccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCc----eEEccCCCcceEEeeeEc-CCCe-EEEEECCCc--------
Confidence            468999999 8 677777766 7899999987642    234556777 89999999 8886 566665555        


Q ss_pred             cccCCCcEE-EEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEE
Q psy4578         700 EENYDQKLM-IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV  778 (860)
Q Consensus       700 ~~~~dg~I~-iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l  778 (860)
                             +. +||+.++.    ...+.+|...+.+++|+|+|++ +++++.++.|++||+.++.. .....+|...+.++
T Consensus       360 -------l~~~~d~~~~~----~~~l~~~~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~  426 (1045)
T 1k32_A          360 -------FLGIYDYRTGK----AEKFEENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGKP-TVIERSREAMITDF  426 (1045)
T ss_dssp             -------EEEEEETTTCC----EEECCCCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCE
T ss_pred             -------eEEEEECCCCC----ceEecCCccceeeeEECCCCCE-EEEECCCCeEEEEECCCCce-EEeccCCCCCccce
Confidence                   77 88887642    2334478889999999999995 88999999999999998876 55566788999999


Q ss_pred             EEcCCCCCEEEEEECC----------CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578         779 QWSPHNETILASSGTD----------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~D----------g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                      +|+|+|++ |++++.+          +.|++||+.++.               ...+..|...+.+++|+|||+++++++
T Consensus       427 ~~SpDG~~-la~~~~~~~~~~~~~~~~~i~l~d~~~g~---------------~~~l~~~~~~~~~~~~spdG~~l~~~s  490 (1045)
T 1k32_A          427 TISDNSRF-IAYGFPLKHGETDGYVMQAIHVYDMEGRK---------------IFAATTENSHDYAPAFDADSKNLYYLS  490 (1045)
T ss_dssp             EECTTSCE-EEEEEEECSSTTCSCCEEEEEEEETTTTE---------------EEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             EECCCCCe-EEEEecCccccccCCCCCeEEEEECCCCc---------------EEEeeCCCcccCCceEcCCCCEEEEEe
Confidence            99999997 5555543          489999998632               344556777889999999999766444


Q ss_pred             e
Q psy4578         849 S  849 (860)
Q Consensus       849 s  849 (860)
                      .
T Consensus       491 ~  491 (1045)
T 1k32_A          491 Y  491 (1045)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.42  E-value=3e-12  Score=154.46  Aligned_cols=196  Identities=11%  Similarity=0.128  Sum_probs=133.6

Q ss_pred             eeeeEeeccCCcEEEEEe---------------------------------CCCcEEEEEcCCCCcccCeeeccCCCCCe
Q psy4578         624 LIDVAWHLLHESLFGSVA---------------------------------DDQKLMIWDTRSHNVSKPSHTVDAHTAEV  670 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs---------------------------------~DG~I~IWd~~~~~~~~~~~~~~~h~~~V  670 (860)
                      +.+++|+| +++.|++++                                 .++.|.+||+.++... .+.....|...+
T Consensus       183 ~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~  260 (706)
T 2z3z_A          183 EKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV-YLQTGEPKEKFL  260 (706)
T ss_dssp             CCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE-ECCCCSCTTCEE
T ss_pred             CceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE-eeccCCCCceeE
Confidence            58999999 777788776                                 4468999999875321 111122566789


Q ss_pred             eEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCC---CeEEEEEcC--CCCcEEE
Q psy4578         671 NCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA---EVNCLSFNP--YSEYILA  745 (860)
Q Consensus       671 ~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~---~I~sl~~sp--~g~~lla  745 (860)
                      .+++|+|+|+. +++++.++.          .....|.+||+.++.....+.. ..+..   .+.+++|+|  +|+ +++
T Consensus       261 ~~~~~spdg~~-l~~~~~~~~----------~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~sp~~dg~-~l~  327 (706)
T 2z3z_A          261 TNLSWSPDENI-LYVAEVNRA----------QNECKVNAYDAETGRFVRTLFV-ETDKHYVEPLHPLTFLPGSNNQ-FIW  327 (706)
T ss_dssp             EEEEECTTSSE-EEEEEECTT----------SCEEEEEEEETTTCCEEEEEEE-EECSSCCCCCSCCEECTTCSSE-EEE
T ss_pred             eeEEEECCCCE-EEEEEeCCC----------CCeeEEEEEECCCCceeeEEEE-ccCCCeECccCCceeecCCCCE-EEE
Confidence            99999999997 555544431          0123499999987621111111 12222   246789999  998 588


Q ss_pred             EeeCCCcEEEEeCC-CCceeeEEeccCCCceEE-EEEcCCCCCEEEEEECCC----cEEEEECCCCCcccccccccCCCC
Q psy4578         746 TGSADKTVALWDLR-NLKLKLHSFESHKDEIFQ-VQWSPHNETILASSGTDR----RLHVWDLSKIGEEQSTEDAEDGPP  819 (860)
Q Consensus       746 sgs~Dg~I~IWDl~-~~~~~~~~~~~h~~~V~~-l~fsp~g~~lL~tgs~Dg----~I~iWdl~~~~~~~~~~~~~~~~~  819 (860)
                      +++.||.++||+++ ++.. ...+..|...+.+ ++|+|+|+.++++++.++    .|..||+.++..            
T Consensus       328 ~~~~~g~~~l~~~~~~~~~-~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~------------  394 (706)
T 2z3z_A          328 QSRRDGWNHLYLYDTTGRL-IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT------------  394 (706)
T ss_dssp             EECTTSSCEEEEEETTSCE-EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC------------
T ss_pred             EEccCCccEEEEEECCCCE-EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc------------
Confidence            88999999999886 3443 6667777777877 799999998666666665    666667655221            


Q ss_pred             ccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578         820 ELLFIHGGHTAKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       820 ~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D  851 (860)
                         ..+ .|...+.+++|+|||++++++++.+
T Consensus       395 ---~~l-~~~~~~~~~~~spdg~~l~~~~~~~  422 (706)
T 2z3z_A          395 ---KDL-TPESGMHRTQLSPDGSAIIDIFQSP  422 (706)
T ss_dssp             ---EES-CCSSSEEEEEECTTSSEEEEEEECS
T ss_pred             ---eec-cCCCceEEEEECCCCCEEEEEecCC
Confidence               111 2456789999999999877776655

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.42  E-value=5.1e-12  Score=140.10  Aligned_cols=206  Identities=13%  Similarity=0.163  Sum_probs=128.9

Q ss_pred             ceeeeEeeccCCc--EEEEEe-------------CCCcEEEEEcCC-CCcccCeeecc-CCCCCeeEEEEccCCCeEEEE
Q psy4578         623 LLIDVAWHLLHES--LFGSVA-------------DDQKLMIWDTRS-HNVSKPSHTVD-AHTAEVNCLSFNPYSEYILAT  685 (860)
Q Consensus       623 ~V~~v~~sp~~~~--~lasgs-------------~DG~I~IWd~~~-~~~~~~~~~~~-~h~~~V~~l~~sp~g~~llas  685 (860)
                      .+.+++|+| +++  ++++++             .+|.+.+|++.. +.....+..+. .+...+.+++|+|+|++++++
T Consensus        84 ~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           84 HPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence            466799998 555  344543             689999999974 32211122111 245679999999999975544


Q ss_pred             EeCCCceeeecccccccCCCcEEEEeCC-CCCCCCCeeeec--CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC--C
Q psy4578         686 GSADKTQFEVEEEEEENYDQKLMIWDTR-SHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--N  760 (860)
Q Consensus       686 gs~Dg~i~~~~~~~~~~~dg~I~iwDl~-~~~~~~~~~~~~--~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~--~  760 (860)
                      ...++.               |.+||+. +++. ..+..+.  .|...+..++|+|+|+++++++..++.|.+|++.  +
T Consensus       163 ~~~~~~---------------v~~~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~  226 (365)
T 1jof_A          163 DLTANK---------------LWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             ETTTTE---------------EEEEEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             cCCCCE---------------EEEEEECCCCCE-EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC
Confidence            434555               9999997 5421 1222332  2456789999999999755555567899999875  3


Q ss_pred             Cceee--EEec-------cCCC------ceEEEE-EcCCCCCEEEEEECCC-----cEEEEECCCCCcccccccccCCCC
Q psy4578         761 LKLKL--HSFE-------SHKD------EIFQVQ-WSPHNETILASSGTDR-----RLHVWDLSKIGEEQSTEDAEDGPP  819 (860)
Q Consensus       761 ~~~~~--~~~~-------~h~~------~V~~l~-fsp~g~~lL~tgs~Dg-----~I~iWdl~~~~~~~~~~~~~~~~~  819 (860)
                      +....  ....       +|..      .+.+++ |+|+|++++++...++     +|.+|++......           
T Consensus       227 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~-----------  295 (365)
T 1jof_A          227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI-----------  295 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-----------
T ss_pred             CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-----------
Confidence            43211  1121       1222      588999 9999997544443333     8999998631111           


Q ss_pred             ccEE-EecCccCceEEEEEcc---CCCeEEEEEeCCCeEee
Q psy4578         820 ELLF-IHGGHTAKISDFSWNP---NEPWVICSVSEDNIMQK  856 (860)
Q Consensus       820 ~~i~-~~~~h~~~I~~i~~sp---dg~~Llasgs~Dg~IrI  856 (860)
                      ..+. ....+...+..++|+|   +|+++++++.+++.|++
T Consensus       296 ~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v  336 (365)
T 1jof_A          296 EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEE
Confidence            1111 1222344567789999   89987766666677765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.38  E-value=8.1e-13  Score=159.95  Aligned_cols=217  Identities=12%  Similarity=0.108  Sum_probs=139.2

Q ss_pred             EEEeeccchhhhhhhhhcccc----eeeeEeeccCCcEEEEEeC---------CCcEEEEEcCCCCcccCeeeccCCCCC
Q psy4578         603 VMYLENKTRAQICQLLDKLRL----LIDVAWHLLHESLFGSVAD---------DQKLMIWDTRSHNVSKPSHTVDAHTAE  669 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~----V~~v~~sp~~~~~lasgs~---------DG~I~IWd~~~~~~~~~~~~~~~h~~~  669 (860)
                      .+++|+...++...+..++..    +.+++|+| +++.+++++.         ++.|++||+.+++.... ..+   ...
T Consensus        37 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l---~~~  111 (719)
T 1z68_A           37 NIVLYNIETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-NEL---PRP  111 (719)
T ss_dssp             CEEEEESSSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCC---CSS
T ss_pred             CEEEEEcCCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccc-eec---Ccc
Confidence            356677666666666655433    99999999 7777777765         78999999987532100 111   256


Q ss_pred             eeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCC-----------------eE
Q psy4578         670 VNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAE-----------------VN  732 (860)
Q Consensus       670 V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~-----------------I~  732 (860)
                      +.+++|+|||+. ++.+. ++.               |++||+.++....  .+..++...                 ..
T Consensus       112 ~~~~~~SPDG~~-la~~~-~~~---------------i~~~~~~~g~~~~--l~~~~~~~~v~~g~~~~v~~ee~~~~~~  172 (719)
T 1z68_A          112 IQYLCWSPVGSK-LAYVY-QNN---------------IYLKQRPGDPPFQ--ITFNGRENKIFNGIPDWVYEEEMLATKY  172 (719)
T ss_dssp             BCCEEECSSTTC-EEEEE-TTE---------------EEEESSTTSCCEE--CCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred             cccceECCCCCE-EEEEE-CCe---------------EEEEeCCCCCcEE--EecCCCcCCeEcccccceeeeecccCcc
Confidence            889999999997 55554 556               9999987763211  111222221                 25


Q ss_pred             EEEEcCCCCcEEEEeeCCC----------------------------------cEEEEeCCCCcee----e---EEeccC
Q psy4578         733 CLSFNPYSEYILATGSADK----------------------------------TVALWDLRNLKLK----L---HSFESH  771 (860)
Q Consensus       733 sl~~sp~g~~llasgs~Dg----------------------------------~I~IWDl~~~~~~----~---~~~~~h  771 (860)
                      +++|+|||++ |++++.|.                                  .|++||+.++...    +   ..+.+|
T Consensus       173 ~~~wSPDG~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  251 (719)
T 1z68_A          173 ALWWSPNGKF-LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS  251 (719)
T ss_dssp             CEEECTTSSE-EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred             cEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence            8999999996 66666442                                  7889999887631    1   123457


Q ss_pred             CCceEEEEEcCCCCCEEEEEECC----CcEEEEE----CCCCCcccccccccCCCCccEEEecCccCceE-----EEEEc
Q psy4578         772 KDEIFQVQWSPHNETILASSGTD----RRLHVWD----LSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS-----DFSWN  838 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~D----g~I~iWd----l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~-----~i~~s  838 (860)
                      ...+.+++|+||++ ++++....    ..|.+||    ..++.......          ....+|.+.+.     .++|+
T Consensus       252 ~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~~~~~s  320 (719)
T 1z68_A          252 DYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE----------HIEESRTGWAGGFFVSTPVFS  320 (719)
T ss_dssp             CEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE----------EEEECSSSCSSSSSCCCCEEC
T ss_pred             cceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEe----------cccccCCceEccccCCccEEC
Confidence            88899999999976 56664422    2488889    66543321110          00124455555     78999


Q ss_pred             cCCCeEEE-EEeCCCeEe
Q psy4578         839 PNEPWVIC-SVSEDNIMQ  855 (860)
Q Consensus       839 pdg~~Lla-sgs~Dg~Ir  855 (860)
                      |||+.+++ ++..+|..+
T Consensus       321 pdg~~l~~~~~~~~g~~~  338 (719)
T 1z68_A          321 YDAISYYKIFSDKDGYKH  338 (719)
T ss_dssp             TTSSCEEEEEECTTSCEE
T ss_pred             CCCCeEEEEEEccCCceE
Confidence            99997655 455565443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.37  E-value=1.3e-11  Score=145.46  Aligned_cols=188  Identities=13%  Similarity=0.084  Sum_probs=128.0

Q ss_pred             ccceeeeEeeccCCcEEEEEeC-CCcEEEEEcCCCCcccCeeeccCCC-CCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVAD-DQKLMIWDTRSHNVSKPSHTVDAHT-AEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~-DG~I~IWd~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      ..+|.+++|+| +++.+|+++. ||+++||++.++   . ...+..|. ..+.+++|+|+  .++++++.++.       
T Consensus        21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g---~-~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g-------   86 (582)
T 3o4h_A           21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGG---E-TVKLNREPINSVLDPHYGVG--RVILVRDVSKG-------   86 (582)
T ss_dssp             HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETT---E-EEECCSSCCSEECEECTTCS--EEEEEEECSTT-------
T ss_pred             ccchheeecCC-CCCeEEEEEccCCceeEEEEcCC---C-cEeeecccccccccccCCCC--eEEEEeccCCC-------
Confidence            35799999999 7777777766 999999998653   2 23444455 68999999998  46777765221       


Q ss_pred             ccccCCCcEEEEeCCC--CCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceE
Q psy4578         699 EEENYDQKLMIWDTRS--HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIF  776 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~--~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~  776 (860)
                           +...++|.+..  ..  ... .+.. ...+...+|+|+|+.++++++.++.+.+||+.++.. .. +..+..  .
T Consensus        87 -----~~~~~l~~~~~~~~g--~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~-~~-l~~~~~--~  153 (582)
T 3o4h_A           87 -----AEQHALFKVNTSRPG--EEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL-RE-LARLPG--F  153 (582)
T ss_dssp             -----SCCEEEEEEETTSTT--CCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE-EE-EEEESS--C
T ss_pred             -----CcceEEEEEeccCCC--ccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE-EE-eecCCC--c
Confidence                 11255655443  21  111 2222 223456789999876555555556666999988764 22 322333  7


Q ss_pred             EEEEcCCCCCEEEEEECC----CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         777 QVQWSPHNETILASSGTD----RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~D----g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      +++|+|||+. +++++.|    +.|++||+.++..               ..+.+|.+.+.+++|||||++++ +++.++
T Consensus       154 ~~~~spDG~~-la~~~~~~~~~~~i~~~d~~~g~~---------------~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~  216 (582)
T 3o4h_A          154 GFVSDIRGDL-IAGLGFFGGGRVSLFTSNLSSGGL---------------RVFDSGEGSFSSASISPGMKVTA-GLETAR  216 (582)
T ss_dssp             EEEEEEETTE-EEEEEEEETTEEEEEEEETTTCCC---------------EEECCSSCEEEEEEECTTSCEEE-EEECSS
T ss_pred             eEEECCCCCE-EEEEEEcCCCCeEEEEEcCCCCCc---------------eEeecCCCccccceECCCCCEEE-EccCCC
Confidence            8999999996 6666656    7899999887432               23456778899999999999755 777777

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.36  E-value=1.8e-11  Score=132.12  Aligned_cols=147  Identities=20%  Similarity=0.204  Sum_probs=107.8

Q ss_pred             cEEEEEeCCCcEEEEEcCCCCcccCeeeccC-CCC-CeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578         635 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-HTA-EVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDT  712 (860)
Q Consensus       635 ~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~-h~~-~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl  712 (860)
                      .++++++.++.|.+||..+++   ....+.. +.. .+.+++|+|+|++++++++.++.               |.+||+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~---------------v~~~d~   63 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMA---VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSES---------------LVKIDL   63 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTE---EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTE---------------EEEEET
T ss_pred             cEEEEcCCCCeEEEEECCCCc---EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCe---------------EEEEEC
Confidence            478999999999999998753   3333332 211 47899999999987788777777               999999


Q ss_pred             CCCCCCCCeeeecC-C----CCCeEEEEEcCCCCcEEEEee------------CCCcEEEEeCCCCceeeEEeccCCCce
Q psy4578         713 RSHNVSKPSHTVDA-H----TAEVNCLSFNPYSEYILATGS------------ADKTVALWDLRNLKLKLHSFESHKDEI  775 (860)
Q Consensus       713 ~~~~~~~~~~~~~~-h----~~~I~sl~~sp~g~~llasgs------------~Dg~I~IWDl~~~~~~~~~~~~h~~~V  775 (860)
                      .++   +.+..+.. +    ...+.+++|+|+|++ +++++            .++.|.+||+.++.. ...+.. ...+
T Consensus        64 ~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~  137 (337)
T 1pby_B           64 VTG---ETLGRIDLSTPEERVKSLFGAALSPDGKT-LAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQI  137 (337)
T ss_dssp             TTC---CEEEEEECCBTTEEEECTTCEEECTTSSE-EEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSC
T ss_pred             CCC---CeEeeEEcCCcccccccccceEECCCCCE-EEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCc
Confidence            876   33333331 1    125778999999986 55554            579999999988775 444543 4567


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      .+++|+|+|++ ++++  ++.|.+||+.++...
T Consensus       138 ~~~~~s~dg~~-l~~~--~~~i~~~d~~~~~~~  167 (337)
T 1pby_B          138 TMLAWARDGSK-LYGL--GRDLHVMDPEAGTLV  167 (337)
T ss_dssp             CCEEECTTSSC-EEEE--SSSEEEEETTTTEEE
T ss_pred             ceeEECCCCCE-EEEe--CCeEEEEECCCCcEe
Confidence            88999999997 4455  689999999876543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.35  E-value=1.2e-11  Score=156.41  Aligned_cols=184  Identities=12%  Similarity=0.094  Sum_probs=138.7

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC-----------CCCCeeEEEEc-cCCCeEEEEEeC
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-----------HTAEVNCLSFN-PYSEYILATGSA  688 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~-----------h~~~V~~l~~s-p~g~~llasgs~  688 (860)
                      +..+...+|+| ++..++++ .++.|.+|+....    .+..+.+           |...+.+++|+ |+|+. +++++ 
T Consensus       244 ~~~~~~~~~Sp-DG~~la~~-~~~~i~~~d~~~~----~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~-la~~~-  315 (1045)
T 1k32_A          244 FTDYYPRHLNT-DGRRILFS-KGGSIYIFNPDTE----KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDL-IAFVS-  315 (1045)
T ss_dssp             CCSSCEEEEEE-SSSCEEEE-ETTEEEEECTTTC----CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGC-EEEEE-
T ss_pred             CCCcceeeEcC-CCCEEEEE-eCCEEEEecCCce----EeeeeccCcccccccccccccccceeeecCCCCCE-EEEEE-
Confidence            34577889998 66666666 4899999998432    2233333           34479999999 99997 55555 


Q ss_pred             CCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCC-CeEEEEEcCCCCcEEEEeeCCCcEE-EEeCCCCceeeE
Q psy4578         689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA-EVNCLSFNPYSEYILATGSADKTVA-LWDLRNLKLKLH  766 (860)
Q Consensus       689 Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~-~I~sl~~sp~g~~llasgs~Dg~I~-IWDl~~~~~~~~  766 (860)
                      ++.               +.+|+...+    ....+..|.. .+.+++|+ +|.. +++++.++.+. +||..++..  .
T Consensus       316 ~~~---------------i~~~~~~~~----~~~~~~~~~~~~~~~~~~s-dg~~-l~~~s~~~~l~~~~d~~~~~~--~  372 (1045)
T 1k32_A          316 RGQ---------------AFIQDVSGT----YVLKVPEPLRIRYVRRGGD-TKVA-FIHGTREGDFLGIYDYRTGKA--E  372 (1045)
T ss_dssp             TTE---------------EEEECTTSS----BEEECSCCSCEEEEEECSS-SEEE-EEEEETTEEEEEEEETTTCCE--E
T ss_pred             cCE---------------EEEEcCCCC----ceEEccCCCcceEEeeeEc-CCCe-EEEEECCCceEEEEECCCCCc--e
Confidence            566               899998764    2334566777 89999999 9986 77777788888 999987764  3


Q ss_pred             EeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEE
Q psy4578         767 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC  846 (860)
Q Consensus       767 ~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Lla  846 (860)
                      .+.+|...+.+++|+|+|++ |++++.++.|++||+.++.              ......+|.+.+.+++|+|||+++++
T Consensus       373 ~l~~~~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~tg~--------------~~~~~~~~~~~v~~~~~SpDG~~la~  437 (1045)
T 1k32_A          373 KFEENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGK--------------PTVIERSREAMITDFTISDNSRFIAY  437 (1045)
T ss_dssp             ECCCCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCC--------------EEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred             EecCCccceeeeEECCCCCE-EEEECCCCeEEEEECCCCc--------------eEEeccCCCCCccceEECCCCCeEEE
Confidence            44478889999999999986 7899999999999998743              23334468888999999999998765


Q ss_pred             EEeC
Q psy4578         847 SVSE  850 (860)
Q Consensus       847 sgs~  850 (860)
                      ++.+
T Consensus       438 ~~~~  441 (1045)
T 1k32_A          438 GFPL  441 (1045)
T ss_dssp             EEEE
T ss_pred             EecC
Confidence            5543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.33  E-value=5.2e-12  Score=152.85  Aligned_cols=199  Identities=14%  Similarity=0.206  Sum_probs=123.9

Q ss_pred             eeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCC---CeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         625 IDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTA---EVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       625 ~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~---~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      .+++|+| ++.+++ ++.||.|++||+.+++.   ...+.+|..   .+.+++|||||++ ++.++..+..  |+    -
T Consensus        19 ~~~~~s~-dg~~~~-~~~d~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~~~--~~----~   86 (719)
T 1z68_A           19 FFPNWIS-GQEYLH-QSADNNIVLYNIETGQS---YTILSNRTMKSVNASNYGLSPDRQF-VYLESDYSKL--WR----Y   86 (719)
T ss_dssp             CCCEESS-SSEEEE-ECTTSCEEEEESSSCCE---EEEECHHHHHTTTCSEEEECTTSSE-EEEEEEEEEC--SS----S
T ss_pred             CccEECC-CCeEEE-EcCCCCEEEEEcCCCcE---EEEEccccccccceeeEEECCCCCe-EEEEecCcee--EE----e
Confidence            4889998 555554 45799999999988543   333333322   4899999999997 5555431100  00    0


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCce------
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEI------  775 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V------  775 (860)
                      ..++.|++||+.+++.... ..+   ...+.+++|||+|+. |+.++ ++.|++||+.++........++...+      
T Consensus        87 s~~~~i~~~d~~~g~~~~~-~~l---~~~~~~~~~SPDG~~-la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~  160 (719)
T 1z68_A           87 SYTATYYIYDLSNGEFVRG-NEL---PRPIQYLCWSPVGSK-LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPD  160 (719)
T ss_dssp             CEEEEEEEEETTTTEECCS-SCC---CSSBCCEEECSSTTC-EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCC
T ss_pred             ecceEEEEEECCCCccccc-eec---CcccccceECCCCCE-EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccc
Confidence            1123499999988632100 111   356889999999997 66664 78999999988765211122333222      


Q ss_pred             -----------EEEEEcCCCCCEEEEEECCC----------------------------------cEEEEECCCCCcccc
Q psy4578         776 -----------FQVQWSPHNETILASSGTDR----------------------------------RLHVWDLSKIGEEQS  810 (860)
Q Consensus       776 -----------~~l~fsp~g~~lL~tgs~Dg----------------------------------~I~iWdl~~~~~~~~  810 (860)
                                 .+++|+|||++ |++++.|.                                  .|++||+.++.....
T Consensus       161 ~v~~ee~~~~~~~~~wSPDG~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~  239 (719)
T 1z68_A          161 WVYEEEMLATKYALWWSPNGKF-LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP  239 (719)
T ss_dssp             HHHHHHTTCSSCCEEECTTSSE-EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC
T ss_pred             ceeeeecccCcccEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce
Confidence                       48999999997 66665442                                  788888876432100


Q ss_pred             cccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         811 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       811 ~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      ...      ..-..+.+|...+.+++|+||++ ++++..
T Consensus       240 ~~~------~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~  271 (719)
T 1z68_A          240 QEV------PVPAMIASSDYYFSWLTWVTDER-VCLQWL  271 (719)
T ss_dssp             EEC------CCCHHHHTSCEEEEEEEESSSSE-EEEEEE
T ss_pred             eEc------cCCccCCCCcceEEEeEEeCCCe-EEEEEe
Confidence            000      00011235778899999999976 555533

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.32  E-value=5.2e-11  Score=131.91  Aligned_cols=216  Identities=7%  Similarity=0.058  Sum_probs=127.4

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcC-CCCcccCeeeccCCCCCeeEEEEccCCCeE-EEEEeCCCceeeecccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTR-SHNVSKPSHTVDAHTAEVNCLSFNPYSEYI-LATGSADKTQFEVEEEE  699 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~-~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l-lasgs~Dg~i~~~~~~~  699 (860)
                      ..+..++|+| +++++++++.+ .|.+|++. +++... ......+ +.+.+++|+|+|+++ +++++ .|....+....
T Consensus        40 ~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~-~~~~~~~~~~~  114 (365)
T 1jof_A           40 EPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAK-QPPYAVYANPF  114 (365)
T ss_dssp             CCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECS-STTCCEEEEEE
T ss_pred             CCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEec-CCcceecccee
Confidence            4688999998 67778888877 99999997 542211 1111111 235678999999863 34442 11100000000


Q ss_pred             cccCCCcEEEEeCCC-CCCCCCeeeec-CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC-CCcee-eEEec--cCCC
Q psy4578         700 EENYDQKLMIWDTRS-HNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-NLKLK-LHSFE--SHKD  773 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~-~~~~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~-~~~~~-~~~~~--~h~~  773 (860)
                       ...+|.+.+|++.. +.....+..+. .+...+.+++|+|+|++++++...++.|++||+. +++.. +..+.  .|..
T Consensus       115 -~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T 1jof_A          115 -YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             -SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             -ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence             00233499999874 32111111111 2456799999999999744444457899999998 56532 22333  2466


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCC--CCcccccccccCCCCccEEEe----cCccC------ceEEEE-EccC
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSK--IGEEQSTEDAEDGPPELLFIH----GGHTA------KISDFS-WNPN  840 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~--~~~~~~~~~~~~~~~~~i~~~----~~h~~------~I~~i~-~spd  840 (860)
                      .+..++|+|+|+++++++..++.|.+|++..  +......        ..+...    .+|..      .+.+++ |+||
T Consensus       194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd  265 (365)
T 1jof_A          194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH--------HSFPLIPPGIPDRDPETGKGLYRADVCALTFS  265 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE--------EEEESSCTTCCCBCTTTSSBSEEEEEEEECTT
T ss_pred             CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc--------ceEEcCCCCcCCcccccccccccccEEEECCC
Confidence            7999999999997444444578999998763  2210000        001111    12232      588999 9999


Q ss_pred             CCeEEEEEeCC
Q psy4578         841 EPWVICSVSED  851 (860)
Q Consensus       841 g~~Llasgs~D  851 (860)
                      |++++++...+
T Consensus       266 G~~l~v~~~~~  276 (365)
T 1jof_A          266 GKYMFASSRAN  276 (365)
T ss_dssp             SSEEEEEEEES
T ss_pred             CCEEEEECCCC
Confidence            99877665443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.30  E-value=5.9e-11  Score=128.98  Aligned_cols=156  Identities=7%  Similarity=0.037  Sum_probs=110.9

Q ss_pred             eeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC-CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCC
Q psy4578         626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT-AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYD  704 (860)
Q Consensus       626 ~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~d  704 (860)
                      ++++++ ++.++++++.++.|.+||..+++   ....+..+. ..+..++|+|+|+.+++++..++.             
T Consensus         4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~-------------   66 (349)
T 1jmx_B            4 GPALKA-GHEYMIVTNYPNNLHVVDVASDT---VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD-------------   66 (349)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTTE---EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE-------------
T ss_pred             cccccC-CCEEEEEeCCCCeEEEEECCCCc---EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCc-------------
Confidence            456776 78889999999999999998753   333443322 257899999999977777767777             


Q ss_pred             CcEEEEeCCCCCCCCCeeeecCC------CCCeEEEEEcCCCCcEEEEeeCC------------CcEEEEeCCCCce--e
Q psy4578         705 QKLMIWDTRSHNVSKPSHTVDAH------TAEVNCLSFNPYSEYILATGSAD------------KTVALWDLRNLKL--K  764 (860)
Q Consensus       705 g~I~iwDl~~~~~~~~~~~~~~h------~~~I~sl~~sp~g~~llasgs~D------------g~I~IWDl~~~~~--~  764 (860)
                        |.+||+.++   +....+..+      ...+.+++|+|+|++ +++++.+            +.|.+||+.++..  .
T Consensus        67 --i~~~d~~t~---~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  140 (349)
T 1jmx_B           67 --IYGIDLDTC---KNTFHANLSSVPGEVGRSMYSFAISPDGKE-VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP  140 (349)
T ss_dssp             --EEEEETTTT---EEEEEEESCCSTTEEEECSSCEEECTTSSE-EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred             --EEEEeCCCC---cEEEEEEcccccccccccccceEECCCCCE-EEEEcccccccccccccCCCeEEEEECCCccccce
Confidence              999999876   333333322      223788999999996 5555544            8999999987432  1


Q ss_pred             eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578         765 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  809 (860)
Q Consensus       765 ~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~  809 (860)
                      +..+. +...+.+++|+|+|+ +++ ++  +.|.+||..+++...
T Consensus       141 ~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~  180 (349)
T 1jmx_B          141 VRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTV  180 (349)
T ss_dssp             SEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEE
T ss_pred             eeecc-CCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCceec
Confidence            23333 344688999999998 554 43  349999998866543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.24  E-value=1.9e-10  Score=139.97  Aligned_cols=161  Identities=16%  Similarity=0.243  Sum_probs=107.4

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCC-----CeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTA-----EVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~-----~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      ....++.|+| ++.+++++  ||.|++||+.+++.   ...+.+|..     ...+++|||||++ ++.++.++.++.. 
T Consensus        17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Spdg~~-l~~~~~~~~~~r~-   88 (740)
T 4a5s_A           17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNS---SVFLENSTFDEFGHSINDYSISPDGQF-ILLEYNYVKQWRH-   88 (740)
T ss_dssp             CCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCE---EEEECTTTTTTCCSCCCEEEECTTSSE-EEEEEEEEECSSS-
T ss_pred             ccccccEECC-CCcEEEEc--CCcEEEEECCCCce---EEEEechhhhhhcccccceEECCCCCE-EEEEECCeeeEEE-
Confidence            3467899998 67788876  89999999998643   334445443     2345899999997 5555555432211 


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCce-
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEI-  775 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V-  775 (860)
                           ...+.+.+||+.+++.    ..+..|.+.+...+|||+|+. ||.+ .|+.|++||+.++.....+..++...+ 
T Consensus        89 -----~~~~~~~~~d~~~~~~----~~l~~~~~~~~~~~~SPdG~~-la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~  157 (740)
T 4a5s_A           89 -----SYTASYDIYDLNKRQL----ITEERIPNNTQWVTWSPVGHK-LAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIY  157 (740)
T ss_dssp             -----CEEEEEEEEETTTTEE----CCSSCCCTTEEEEEECSSTTC-EEEE-ETTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred             -----ccceEEEEEECCCCcE----EEcccCCCcceeeEECCCCCE-EEEE-ECCeEEEEECCCCceEEEcCCCCcccee
Confidence                 1124488999998642    335567788999999999997 6665 468999999988764222222333322 


Q ss_pred             ----------------EEEEEcCCCCCEEEEEE-CCCcEEEEEC
Q psy4578         776 ----------------FQVQWSPHNETILASSG-TDRRLHVWDL  802 (860)
Q Consensus       776 ----------------~~l~fsp~g~~lL~tgs-~Dg~I~iWdl  802 (860)
                                      .++.|||||+. |+.++ .++.+.+|++
T Consensus       158 ~g~~~~v~~ee~~~~~~~~~wSpDg~~-la~~~~d~~~v~~~~~  200 (740)
T 4a5s_A          158 NGITDWVYEEEVFSAYSALWWSPNGTF-LAYAQFNDTEVPLIEY  200 (740)
T ss_dssp             ESBCCHHHHHHTSSSSBCEEECTTSSE-EEEEEEECTTCCEEEE
T ss_pred             cCcccccccchhcCCCcceEECCCCCE-EEEEEEcccCCceEEE
Confidence                            34899999997 55554 3343555544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.20  E-value=4.2e-10  Score=124.64  Aligned_cols=204  Identities=12%  Similarity=0.030  Sum_probs=130.0

Q ss_pred             eeccchhhhhhhhhcccceee-----eEeeccCCcEEEEEeC-CCc--EEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578         606 LENKTRAQICQLLDKLRLLID-----VAWHLLHESLFGSVAD-DQK--LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  677 (860)
Q Consensus       606 l~n~~~~~l~~l~~~~~~V~~-----v~~sp~~~~~lasgs~-DG~--I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp  677 (860)
                      ........+.++..+......     .+|+| +++.|+.++. +|.  |.+||+.+++   ......++...+.++.|+|
T Consensus        15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g~---~~~lt~~~~~~~~~~~~sp   90 (388)
T 3pe7_A           15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQV---ATQLTEGRGDNTFGGFLSP   90 (388)
T ss_dssp             ECTTTCCEEEECSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTCE---EEECCCSSCBCSSSCEECT
T ss_pred             ecCCCCcceEEecCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCCc---eEEeeeCCCCCccceEEcC
Confidence            333334444444444444444     88999 6666666665 774  7788887743   3333445555555788999


Q ss_pred             CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEE--EcCCCCcEEEE---------
Q psy4578         678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLS--FNPYSEYILAT---------  746 (860)
Q Consensus       678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~--~sp~g~~llas---------  746 (860)
                      +|+. |+.++.++.               +++||+.++   ........+...+....  ++|++.. ++.         
T Consensus        91 dg~~-l~~~~~~~~---------------l~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~dg~~-l~~~~~~~~~~~  150 (388)
T 3pe7_A           91 DDDA-LFYVKDGRN---------------LMRVDLATL---EENVVYQVPAEWVGYGTWVANSDCTK-LVGIEIRREDWV  150 (388)
T ss_dssp             TSSE-EEEEETTTE---------------EEEEETTTC---CEEEEEECCTTEEEEEEEEECTTSSE-EEEEEEEGGGCC
T ss_pred             CCCE-EEEEeCCCe---------------EEEEECCCC---cceeeeechhhcccccceeECCCCCe-eccccccCcccc
Confidence            9996 666666766               999999886   33333444555454444  4899985 442         


Q ss_pred             -------------eeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC-CCCCEEEEEECC------CcEEEEECCCCC
Q psy4578         747 -------------GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTD------RRLHVWDLSKIG  806 (860)
Q Consensus       747 -------------gs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp-~g~~lL~tgs~D------g~I~iWdl~~~~  806 (860)
                                   ++.++.|.+||+.++..  ..+..+...+..++|+| +|+. |+.++.+      ..|.++|.....
T Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~~~~~sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          151 PLTDWKKFHEFYFTKPCCRLMRVDLKTGES--TVILQENQWLGHPIYRPYDDST-VAFCHEGPHDLVDARMWLINEDGTN  227 (388)
T ss_dssp             CCCSHHHHHHHGGGCCCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEEEE-EEEEECSCTTTSSCSEEEEETTSCC
T ss_pred             cccccchhhhhhccCCcceEEEEECCCCce--EEeecCCccccccEECCCCCCE-EEEEEecCCCCCcceEEEEeCCCCc
Confidence                         22457899999998864  44445677899999999 9986 5555443      377788876522


Q ss_pred             cccccccccCCCCccEEEecCcc--CceEEEEEccCCCeEEEEEeCC
Q psy4578         807 EEQSTEDAEDGPPELLFIHGGHT--AKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       807 ~~~~~~~~~~~~~~~i~~~~~h~--~~I~~i~~spdg~~Llasgs~D  851 (860)
                      .               ..+..+.  ..+...+|+|||+.|+..+..+
T Consensus       228 ~---------------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (388)
T 3pe7_A          228 M---------------RKVKTHAEGESCTHEFWVPDGSALVYVSYLK  259 (388)
T ss_dssp             C---------------EESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             e---------------EEeeeCCCCcccccceECCCCCEEEEEecCC
Confidence            1               1111222  3577889999999876555443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.20  E-value=1.4e-09  Score=118.66  Aligned_cols=215  Identities=11%  Similarity=0.132  Sum_probs=143.2

Q ss_pred             EEeeccchhhhhhhhh--cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec---------cCCCCCeeE
Q psy4578         604 MYLENKTRAQICQLLD--KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV---------DAHTAEVNC  672 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~--~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~---------~~h~~~V~~  672 (860)
                      ++.++....++.....  +.....++++++ +++++++...++.|++||.....  ..+..+         .++.....+
T Consensus        71 i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~--~~~~~~~~~~~~g~~~~~~~~P~~  147 (329)
T 3fvz_A           71 ILVIDPNNAEILQSSGKNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKE--GPLLILGRSMQPGSDQNHFCQPTD  147 (329)
T ss_dssp             EEEECTTTCCEEEEECTTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSS--CCSEEESBTTBCCCSTTCCSSEEE
T ss_pred             EEEEECCCCeEEeccCCCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCe--EEEEEecccCCCCCCccccCCCcE
Confidence            3444444333333322  335688999998 67788888889999999986421  123333         234457899


Q ss_pred             EEEcc-CCCeEEEEEe-CCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC----------CCCCeEEEEEcCCC
Q psy4578         673 LSFNP-YSEYILATGS-ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA----------HTAEVNCLSFNPYS  740 (860)
Q Consensus       673 l~~sp-~g~~llasgs-~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~----------h~~~I~sl~~sp~g  740 (860)
                      ++++| ++. ++++.+ .++.               |++||.. +   ..+..+..          +-....+++++|++
T Consensus       148 ia~~~~~g~-lyv~d~~~~~~---------------I~~~~~~-g---~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~  207 (329)
T 3fvz_A          148 VAVEPSTGA-VFVSDGYCNSR---------------IVQFSPS-G---KFVTQWGEESSGSSPRPGQFSVPHSLALVPHL  207 (329)
T ss_dssp             EEECTTTCC-EEEEECSSCCE---------------EEEECTT-S---CEEEEECEECCSSSCCTTEESCEEEEEEETTT
T ss_pred             EEEeCCCCe-EEEEeCCCCCe---------------EEEEcCC-C---CEEEEeccCCCCCCCCCcccCCCcEEEEECCC
Confidence            99999 555 677775 5776               8888843 2   23333321          22347899999995


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCceeeEEe--ccCCCceEEEEEcCCCCCEEEEEE-------CCCcEEEEECCCCCccccc
Q psy4578         741 EYILATGSADKTVALWDLRNLKLKLHSF--ESHKDEIFQVQWSPHNETILASSG-------TDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       741 ~~llasgs~Dg~I~IWDl~~~~~~~~~~--~~h~~~V~~l~fsp~g~~lL~tgs-------~Dg~I~iWdl~~~~~~~~~  811 (860)
                      ..++++...++.|++||..+++. +..+  ..+...+.+++|+| +. ++++.+       .++.|++||..++.....+
T Consensus       208 g~l~v~d~~~~~I~~~~~~~G~~-~~~~~~~~~~~~~~~~~~~p-g~-~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~  284 (329)
T 3fvz_A          208 DQLCVADRENGRIQCFKTDTKEF-VREIKHASFGRNVFAISYIP-GF-LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF  284 (329)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCE-EEEECCTTTTTCEEEEEEET-TE-EEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCcE-EEEEeccccCCCcceeeecC-CE-EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence            55788888899999999987665 5555  34567889999999 32 233333       3458999998875432221


Q ss_pred             ccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         812 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       812 ~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .           ...++...+.+++++|+| .++++...++.|++
T Consensus       285 ~-----------~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~  317 (329)
T 3fvz_A          285 K-----------PVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWK  317 (329)
T ss_dssp             C-----------CSSSCCSSEEEEEECTTS-EEEEEESSSCCEEE
T ss_pred             c-----------CCCCccCCeeEEEECCCC-CEEEEECCCCEEEE
Confidence            1           013566778999999999 47888888887764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.19  E-value=4e-10  Score=137.10  Aligned_cols=219  Identities=10%  Similarity=0.065  Sum_probs=134.5

Q ss_pred             EEEeeccchhhhhhhhhccc------ceeeeEeeccCCcEEEEEeCC---------CcEEEEEcCCCCcccCeeeccCCC
Q psy4578         603 VMYLENKTRAQICQLLDKLR------LLIDVAWHLLHESLFGSVADD---------QKLMIWDTRSHNVSKPSHTVDAHT  667 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~------~V~~v~~sp~~~~~lasgs~D---------G~I~IWd~~~~~~~~~~~~~~~h~  667 (860)
                      .+++|+...++...++..+.      ...+++|+| +++.++.++.+         +.+.+||+.+++.    ..+..|.
T Consensus        37 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~----~~l~~~~  111 (740)
T 4a5s_A           37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL----ITEERIP  111 (740)
T ss_dssp             EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----CCSSCCC
T ss_pred             cEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEEEEEECCCCcE----EEcccCC
Confidence            45566665555444433221      223478999 67777777765         5677999998532    3455677


Q ss_pred             CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCe----------------
Q psy4578         668 AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEV----------------  731 (860)
Q Consensus       668 ~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I----------------  731 (860)
                      +.+...+|||||+. ++.+. ++.               |++||+.++...  ..+..++...+                
T Consensus       112 ~~~~~~~~SPdG~~-la~~~-~~~---------------i~~~~~~~~~~~--~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A          112 NNTQWVTWSPVGHK-LAYVW-NND---------------IYVKIEPNLPSY--RITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             TTEEEEEECSSTTC-EEEEE-TTE---------------EEEESSTTSCCE--ECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             CcceeeEECCCCCE-EEEEE-CCe---------------EEEEECCCCceE--EEcCCCCccceecCcccccccchhcCC
Confidence            88999999999997 45553 455               889998776321  11122222222                


Q ss_pred             -EEEEEcCCCCcEEEEeeCC-C-----------------------------------cEEEEeCCC---Cce-eeEEec-
Q psy4578         732 -NCLSFNPYSEYILATGSAD-K-----------------------------------TVALWDLRN---LKL-KLHSFE-  769 (860)
Q Consensus       732 -~sl~~sp~g~~llasgs~D-g-----------------------------------~I~IWDl~~---~~~-~~~~~~-  769 (860)
                       .++.|||||++ ||.++.| +                                   .|++||+.+   +.. ....+. 
T Consensus       173 ~~~~~wSpDg~~-la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~  251 (740)
T 4a5s_A          173 YSALWWSPNGTF-LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA  251 (740)
T ss_dssp             SBCEEECTTSSE-EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred             CcceEECCCCCE-EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence             35899999997 5555422 1                                   488899988   621 122333 


Q ss_pred             -----cCCCceEEEEEcCCCCCEEEEEEC---CCcEEEEECCCCC----cccccccccCCCCccEEEecCccCce-----
Q psy4578         770 -----SHKDEIFQVQWSPHNETILASSGT---DRRLHVWDLSKIG----EEQSTEDAEDGPPELLFIHGGHTAKI-----  832 (860)
Q Consensus       770 -----~h~~~V~~l~fsp~g~~lL~tgs~---Dg~I~iWdl~~~~----~~~~~~~~~~~~~~~i~~~~~h~~~I-----  832 (860)
                           +|...+..++|+|||+.++.....   +..|.+||+.++.    +....         .+ ...+|.+.|     
T Consensus       252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~---------~l-~~~~~~~~v~~~~~  321 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR---------QH-IEMSTTGWVGRFRP  321 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG---------CE-EEECSSSCSSSSSC
T ss_pred             CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEE---------Ee-eeccCCceEccCcC
Confidence                 377789999999999853333322   3479999998865    21111         00 012333333     


Q ss_pred             EEEEEccCCCeEE-EEEeCCCeEee
Q psy4578         833 SDFSWNPNEPWVI-CSVSEDNIMQK  856 (860)
Q Consensus       833 ~~i~~spdg~~Ll-asgs~Dg~IrI  856 (860)
                      .+.+|+|||+.++ .....+|.-+|
T Consensus       322 ~~p~fspDG~~l~~~~s~~~G~~~l  346 (740)
T 4a5s_A          322 SEPHFTLDGNSFYKIISNEEGYRHI  346 (740)
T ss_dssp             CCCEECTTSSEEEEEEECTTSCEEE
T ss_pred             CCceEcCCCCEEEEEEEcCCCceEE
Confidence            3678999999866 45445664443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.17  E-value=3.7e-10  Score=125.12  Aligned_cols=223  Identities=11%  Similarity=0.059  Sum_probs=128.5

Q ss_pred             EEeeccchhhhhhhhhccc-ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe----------------------
Q psy4578         604 MYLENKTRAQICQLLDKLR-LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS----------------------  660 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~-~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~----------------------  660 (860)
                      ++.++....+..++...+. .+.++.|+| +++.|+.++.++.|.+||+.+++.....                      
T Consensus        62 l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~  140 (388)
T 3pe7_A           62 YYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLV  140 (388)
T ss_dssp             EEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEE
T ss_pred             EEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeec
Confidence            4555655666555554443 445788998 7777888888888999998765321000                      


Q ss_pred             ----------------------------------------eeccCCCCCeeEEEEcc-CCCeEEEEEeCCCceeeecccc
Q psy4578         661 ----------------------------------------HTVDAHTAEVNCLSFNP-YSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       661 ----------------------------------------~~~~~h~~~V~~l~~sp-~g~~llasgs~Dg~i~~~~~~~  699 (860)
                                                              ..+..+...+..+.|+| +|+.++.+. .++.        
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~-~~~~--------  211 (388)
T 3pe7_A          141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCH-EGPH--------  211 (388)
T ss_dssp             EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEE-CSCT--------
T ss_pred             cccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEE-ecCC--------
Confidence                                                    00011223345566666 665433322 2110        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCC--CCeEEEEEcCCCCcEEEEeeCCC----cEEEEeCCCCcee-eEEeccCC
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHT--AEVNCLSFNPYSEYILATGSADK----TVALWDLRNLKLK-LHSFESHK  772 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~--~~I~sl~~sp~g~~llasgs~Dg----~I~IWDl~~~~~~-~~~~~~h~  772 (860)
                       ......|.++|...+.    ...+..+.  ..+...+|+|+|+.+++++..++    .|++||+.++... +..+.++.
T Consensus       212 -~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~  286 (388)
T 3pe7_A          212 -DLVDARMWLINEDGTN----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACS  286 (388)
T ss_dssp             -TTSSCSEEEEETTSCC----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEE
T ss_pred             -CCCcceEEEEeCCCCc----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCce
Confidence             0012347778876542    22333333  35778999999997545444332    3999999988741 22333211


Q ss_pred             Cc---eEEEEEcCCCCCEEEEE--------ECCCcEEEEECCCCCcccccccccCCCCccEEEecCccC-----------
Q psy4578         773 DE---IFQVQWSPHNETILASS--------GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-----------  830 (860)
Q Consensus       773 ~~---V~~l~fsp~g~~lL~tg--------s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~-----------  830 (860)
                      ..   ....+|+|+|+.++++.        +.+..|++||+.++...               .+..+..           
T Consensus       287 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---------------~l~~~~~~~~~~~~~~~~  351 (388)
T 3pe7_A          287 HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH---------------RVARHDTSWKVFEGDRQV  351 (388)
T ss_dssp             EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE---------------EEEECCCCCCCBTTBSST
T ss_pred             eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE---------------EeccccCccccccccccc
Confidence            00   11237999999855443        45678999999874321               1122222           


Q ss_pred             ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         831 KISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       831 ~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .+.+++|+|||+++++++..++..++
T Consensus       352 ~~~~~~~spDg~~l~~~s~~~g~~~l  377 (388)
T 3pe7_A          352 THPHPSFTPDDKQILFTSDVHGKPAL  377 (388)
T ss_dssp             TCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred             CCCCccCCCCCCEEEEEecCCCceeE
Confidence            47788999999988877777776554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.17  E-value=5.6e-09  Score=110.70  Aligned_cols=192  Identities=13%  Similarity=0.137  Sum_probs=131.6

Q ss_pred             cceeeeEeeccCCcEEEEEeC-CCcEEEEEcCCCCcccCeeecc-CCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVAD-DQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~-DG~I~IWd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      ..+.++++.+.++.++++... ++.|.+||. ++   ..+..+. .+...+.+++++++|+ ++++...++.        
T Consensus        77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g---~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~--------  143 (286)
T 1q7f_A           77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG---QFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMR--------  143 (286)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS---CEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTE--------
T ss_pred             cCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CC---cEEEEecCccCCCceEEEEeCCCC-EEEEECCCCE--------
Confidence            467899996436777776643 889999994 43   2233332 3445789999999997 6777766676        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeec--CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccC--CCce
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH--KDEI  775 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~--~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h--~~~V  775 (860)
                             |.+||...    ..+..+.  .+...+.+++++|+|. ++++.+.++.|++||.....  +..+..+  ...+
T Consensus       144 -------i~~~~~~g----~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~--~~~~~~~g~~~~p  209 (286)
T 1q7f_A          144 -------VIIFDQNG----NVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQY--LRQIGGEGITNYP  209 (286)
T ss_dssp             -------EEEECTTS----CEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCCE--EEEESCTTTSCSE
T ss_pred             -------EEEEcCCC----CEEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCCCE--EEEEccCCccCCC
Confidence                   88888643    2333332  3456789999999988 68887889999999985532  4455433  3678


Q ss_pred             EEEEEcCCCCCEEEEEECCC-cEEEEECCCCCcccccccccCCCCccEEEecC--ccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         776 FQVQWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs~Dg-~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~--h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      .+++++++|. ++++...++ .|.+||... ..              +.....  ....+.+++++|+|. ++++ +.|+
T Consensus       210 ~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g-~~--------------~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~~~  271 (286)
T 1q7f_A          210 IGVGINSNGE-ILIADNHNNFNLTIFTQDG-QL--------------ISALESKVKHAQCFDVALMDDGS-VVLA-SKDY  271 (286)
T ss_dssp             EEEEECTTCC-EEEEECSSSCEEEEECTTS-CE--------------EEEEEESSCCSCEEEEEEETTTE-EEEE-ETTT
T ss_pred             cEEEECCCCC-EEEEeCCCCEEEEEECCCC-CE--------------EEEEcccCCCCcceeEEECCCCc-EEEE-CCCC
Confidence            9999999996 577776675 999999543 11              122222  223578999999997 6666 4577


Q ss_pred             eEee-cc
Q psy4578         853 IMQK-PF  858 (860)
Q Consensus       853 ~IrI-~f  858 (860)
                      .|++ +|
T Consensus       272 ~v~v~~~  278 (286)
T 1q7f_A          272 RLYIYRY  278 (286)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEc
Confidence            7764 44

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.16  E-value=6.1e-10  Score=133.15  Aligned_cols=200  Identities=11%  Similarity=0.060  Sum_probs=135.3

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEE--eCCCcEEEEEcCCCCcccCeeeccCCCCCee---------EEEEc--cCCCe-
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSV--ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVN---------CLSFN--PYSEY-  681 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasg--s~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~---------~l~~s--p~g~~-  681 (860)
                      .+.+|...+..++|++ +.-+++++  +.++...||....+   .....+..+...+.         ...|+  |||+. 
T Consensus        18 ~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~   93 (662)
T 3azo_A           18 LVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRAD---GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL   93 (662)
T ss_dssp             HHHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTT---SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred             HHhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCC---CCcceeCCCCccccccccccCCccceeeeecCCCeE
Confidence            4556778899999996 55556666  55889999997442   23445556665555         66676  99997 


Q ss_pred             EEEEEeCCCceeeecccccccCCCcEEEEeCC--C-CCCCCCeeeecC-----CCCCeEEEEEcCCCCcEEEEeeCC---
Q psy4578         682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTR--S-HNVSKPSHTVDA-----HTAEVNCLSFNPYSEYILATGSAD---  750 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~--~-~~~~~~~~~~~~-----h~~~I~sl~~sp~g~~llasgs~D---  750 (860)
                      ++.+...+..               |.+|++.  . +.    ...+..     |...+.+++|+|+|+. |++++.|   
T Consensus        94 la~~~~~~~~---------------l~~~~~~~~g~~~----~~~l~~~~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~  153 (662)
T 3azo_A           94 LVFTHFGDQR---------------LYAFEPDAPGGAV----PRPLTPVSAVGGGLRWADPVLLPERGE-VWCMAEEFTG  153 (662)
T ss_dssp             EEEEBTTTCC---------------EEEECTTSTTCCC----CEECSCCCCSTTCEEEEEEEEETTTTE-EEEEEEEECS
T ss_pred             EEEEECCCCe---------------EEEEcCCCCCCCC----CEeccCCccCCCCccccCcEECCCCCE-EEEEEecccC
Confidence            5544433444               7777765  2 31    223333     5677899999999996 6666655   


Q ss_pred             -------CcEEEEeCCC------CceeeEEec-cCCCceEEEEEcCCCCCEEEEEECC--------CcEEEEECC-CCCc
Q psy4578         751 -------KTVALWDLRN------LKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTD--------RRLHVWDLS-KIGE  807 (860)
Q Consensus       751 -------g~I~IWDl~~------~~~~~~~~~-~h~~~V~~l~fsp~g~~lL~tgs~D--------g~I~iWdl~-~~~~  807 (860)
                             ..|++||+.+      +.  ...+. .+...+.+++|+|||++ |+.++.+        ..|++||+. ++..
T Consensus       154 ~~~~~~~~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG~~-la~~~~~~~~~~~~~~~i~~~d~~~~g~~  230 (662)
T 3azo_A          154 EGPSDVRRFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDGRQ-AVWLAWDHPRMPWEGTELKTARVTEDGRF  230 (662)
T ss_dssp             SSTTCEEEEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTSSE-EEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred             CCCCCceeEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCCCE-EEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence                   5899999988      44  34555 56678888999999997 5555533        479999988 3310


Q ss_pred             ccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         808 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       808 ~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                                 ........+|...+..++|+|||+ ++++++.++..
T Consensus       231 -----------~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~  265 (662)
T 3azo_A          231 -----------ADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWW  265 (662)
T ss_dssp             -----------EEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSC
T ss_pred             -----------cccEEeCCCCCceEcceEECCCCe-EEEEECCCCCe
Confidence                       011222334567899999999999 77788888743

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.14  E-value=1.1e-09  Score=130.96  Aligned_cols=225  Identities=11%  Similarity=-0.001  Sum_probs=128.1

Q ss_pred             hhhhhhhhccccee---------eeEee--ccCCcEEEEEe-CCCcEEEEEcC--C-CCcccCeeeccC-----CCCCee
Q psy4578         612 AQICQLLDKLRLLI---------DVAWH--LLHESLFGSVA-DDQKLMIWDTR--S-HNVSKPSHTVDA-----HTAEVN  671 (860)
Q Consensus       612 ~~l~~l~~~~~~V~---------~v~~s--p~~~~~lasgs-~DG~I~IWd~~--~-~~~~~~~~~~~~-----h~~~V~  671 (860)
                      +...++..+...+.         ...|+  |+++.+++.++ .++.|.+|+..  . +.    ...+..     |...+.
T Consensus        58 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~----~~~l~~~~~~~~~~~~~  133 (662)
T 3azo_A           58 GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV----PRPLTPVSAVGGGLRWA  133 (662)
T ss_dssp             SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC----CEECSCCCCSTTCEEEE
T ss_pred             CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC----CEeccCCccCCCCcccc
Confidence            33444555555555         66676  74444155443 35566666664  2 22    233333     567889


Q ss_pred             EEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCC--CCCeeeec-CCCCCeEEEEEcCCCCcEEEEee
Q psy4578         672 CLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV--SKPSHTVD-AHTAEVNCLSFNPYSEYILATGS  748 (860)
Q Consensus       672 ~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~--~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs  748 (860)
                      +++|+|||+. |++++.+..     ..........|.+||+.+...  ......+. .+...+.+++|+|+|++ |+.++
T Consensus       134 ~~~~spDg~~-l~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~-la~~~  206 (662)
T 3azo_A          134 DPVLLPERGE-VWCMAEEFT-----GEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQ-AVWLA  206 (662)
T ss_dssp             EEEEETTTTE-EEEEEEEEC-----SSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSE-EEEEE
T ss_pred             CcEECCCCCE-EEEEEeccc-----CCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCE-EEEEE
Confidence            9999999997 444444310     000001123499999987200  00122334 45567888999999997 55555


Q ss_pred             CC--------CcEEEEeCC-CCc--eeeEEeccCCCceEEEEEcCCCCCEEEEEECCC--cEEEEECCCCCccccccccc
Q psy4578         749 AD--------KTVALWDLR-NLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAE  815 (860)
Q Consensus       749 ~D--------g~I~IWDl~-~~~--~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg--~I~iWdl~~~~~~~~~~~~~  815 (860)
                      .+        ..|++||+. ++.  .......+|...+.+++|+|+|+ ++++++.+|  .|.+||..++......... 
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-  284 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRRE-  284 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCS-
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccccc-
Confidence            43        379999998 451  22333445678899999999999 788888888  5556665443321111100 


Q ss_pred             CCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         816 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       816 ~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ....     .....-.+..++|++++. ++++++. +.+++
T Consensus       285 ~~~~-----~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l  318 (662)
T 3azo_A          285 EEFA-----GPLWTPGMRWFAPLANGL-IAVVHGK-GAAVL  318 (662)
T ss_dssp             SBSS-----CCCCSTTCCSEEECTTSC-EEEEEBS-SSCEE
T ss_pred             cccc-----CccccccCceEeEeCCCE-EEEEEEc-CccEE
Confidence            0000     000011156788999988 5667766 66554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.12  E-value=2.8e-09  Score=113.85  Aligned_cols=227  Identities=10%  Similarity=0.018  Sum_probs=138.8

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC-CCCCeeEEEEccCCCeE
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-HTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l  682 (860)
                      ++.++.... ..........+.++++++ ++.++++...++.|.+||..++..........+ ....+.+++++|+|+ +
T Consensus        52 i~~~~~~~~-~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l  128 (296)
T 3e5z_A           52 TWAWSDDGQ-LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-L  128 (296)
T ss_dssp             EEEEETTSC-EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-E
T ss_pred             EEEEECCCC-eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-E
Confidence            344444333 333334456689999998 677877777778999999977543111111111 123567899999998 5


Q ss_pred             EEEEeCCCceeeecccc--cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC-
Q psy4578         683 LATGSADKTQFEVEEEE--EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-  759 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~--~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~-  759 (860)
                      +++.+..|+...+....  .....+.|..++.. +    .+..+..+.....+++|+|+|+. +++.+.++.|.+||+. 
T Consensus       129 ~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g----~~~~~~~~~~~~~gi~~s~dg~~-lv~~~~~~~i~~~~~~~  202 (296)
T 3e5z_A          129 WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G----TLSAPIRDRVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNA  202 (296)
T ss_dssp             EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S----CEEEEECCCSSEEEEEECTTSCE-EEEETTTTEEEEEEECS
T ss_pred             EEECCccccccccccccccccCCCcEEEEECCC-C----CEEEeecCCCCCccEEECCCCCE-EEEeCCCCeEEEEEECC
Confidence            66633222100000000  00112235555543 2    23344456677899999999996 4888888999999997 


Q ss_pred             CCce--eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE
Q psy4578         760 NLKL--KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  837 (860)
Q Consensus       760 ~~~~--~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~  837 (860)
                      ++..  ....+..+...+.+++++++|. ++++.  ++.|.+||...               ..+.....+.. +++++|
T Consensus       203 ~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g---------------~~~~~~~~~~~-~~~~~f  263 (296)
T 3e5z_A          203 RGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDG---------------DELGRVLTPQT-TSNLCF  263 (296)
T ss_dssp             SSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTS---------------CEEEEEECSSC-CCEEEE
T ss_pred             CCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCC---------------CEEEEEECCCC-ceeEEE
Confidence            3332  0122333556677899999997 34444  88999999753               22333444555 899999


Q ss_pred             -ccCCCeEEEEEeCCCeEeeccC
Q psy4578         838 -NPNEPWVICSVSEDNIMQKPFK  859 (860)
Q Consensus       838 -spdg~~Llasgs~Dg~IrI~f~  859 (860)
                       +|+++.|+ .++.++..+++.+
T Consensus       264 ~~~d~~~L~-v~t~~~l~~~~~~  285 (296)
T 3e5z_A          264 GGPEGRTLY-MTVSTEFWSIETN  285 (296)
T ss_dssp             ESTTSCEEE-EEETTEEEEEECS
T ss_pred             ECCCCCEEE-EEcCCeEEEEEcc
Confidence             58888644 5667899988764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.10  E-value=1.7e-09  Score=120.19  Aligned_cols=185  Identities=12%  Similarity=0.021  Sum_probs=129.4

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCC--------cccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHN--------VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~--------~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      +++.+++++ ...++++|+.+ .+.+|++.+..        ....... ..+.. |+.++|  ++.. ++++ .++.   
T Consensus        39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~-L~v~-~~~~---  107 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQ-VLVS-TRNA---  107 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTE-EEEE-ESSE---
T ss_pred             cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCE-EEEE-cCCc---
Confidence            689999998 67788888887 56669875421        0111122 23566 999999  7875 6666 6676   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE  774 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~  774 (860)
                                  |++||+.+..   .......|...+.++.+.+.  . +++++.||.+.+||+.++.. ..    +...
T Consensus       108 ------------l~v~dv~sl~---~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~-~~----~~~~  164 (388)
T 1xip_A          108 ------------LYSLDLEELS---EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKST-KQ----LAQN  164 (388)
T ss_dssp             ------------EEEEESSSTT---CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCE-EE----EEES
T ss_pred             ------------EEEEEchhhh---ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcc-cc----ccCC
Confidence                        9999998763   34455667788888887754  2 77889999999999998765 22    4468


Q ss_pred             eEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc--ccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         775 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGE--EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~--~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      |+|++|+|+|   ++.|..||++++|+......  ...+..    + ..+....+|...|.+++|.+++.++++-+.
T Consensus       165 Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~----P-p~~~~~~~~~~~V~sI~wl~~~~flv~y~~  233 (388)
T 1xip_A          165 VTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSL----P-SELEELPVEEYSPLSVTILSPQDFLAVFGN  233 (388)
T ss_dssp             EEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECC----C-HHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred             ceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecC----C-cccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence            9999999999   46788999999998776432  111100    0 000001146788999999999997665443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.10  E-value=1.3e-08  Score=107.84  Aligned_cols=193  Identities=14%  Similarity=0.162  Sum_probs=132.7

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc------CCCCCeeEEEEc-cCCCeEEEEEeC-CC
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD------AHTAEVNCLSFN-PYSEYILATGSA-DK  690 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~------~h~~~V~~l~~s-p~g~~llasgs~-Dg  690 (860)
                      ++...+.++++++ ++.++++.+.++.|.+||... .   ....+.      ++...+.+++++ +++. +++++.. ++
T Consensus        27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g-~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~~~~  100 (286)
T 1q7f_A           27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEG-R---FKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERSPTH  100 (286)
T ss_dssp             TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTS-C---EEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECGGGC
T ss_pred             CccCCCceEEECC-CCCEEEEECCCCEEEEECCCC-c---EEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCCCCC
Confidence            4456788999998 677888888899999999763 2   222221      234578899995 5554 5666533 56


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCeeeec-CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE  769 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~  769 (860)
                      .               |.+||. ++   ..+..+. .+...+.+++++|+|. ++++...++.|.+||.....  +..+.
T Consensus       101 ~---------------i~~~d~-~g---~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~--~~~~~  158 (286)
T 1q7f_A          101 Q---------------IQIYNQ-YG---QFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV--LHKFG  158 (286)
T ss_dssp             E---------------EEEECT-TS---CEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE--EEEEE
T ss_pred             E---------------EEEECC-CC---cEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCCE--EEEeC
Confidence            5               889984 33   3333332 3445789999999997 67787788999999975433  33343


Q ss_pred             --cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec--CccCceEEEEEccCCCeEE
Q psy4578         770 --SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWVI  845 (860)
Q Consensus       770 --~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~--~h~~~I~~i~~spdg~~Ll  845 (860)
                        .+...+.+++++++|+ ++++.+.++.|++||... .              .+....  ++...+.+++++++|. ++
T Consensus       159 ~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g-~--------------~~~~~~~~g~~~~p~~i~~d~~G~-l~  221 (286)
T 1q7f_A          159 CSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEG-Q--------------YLRQIGGEGITNYPIGVGINSNGE-IL  221 (286)
T ss_dssp             CTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTC-C--------------EEEEESCTTTSCSEEEEEECTTCC-EE
T ss_pred             CCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCC-C--------------EEEEEccCCccCCCcEEEECCCCC-EE
Confidence              4456789999999997 577777899999999743 1              122222  2335788999999997 56


Q ss_pred             EEEeCCC-eEee
Q psy4578         846 CSVSEDN-IMQK  856 (860)
Q Consensus       846 asgs~Dg-~IrI  856 (860)
                      ++...++ .|.+
T Consensus       222 v~~~~~~~~i~~  233 (286)
T 1q7f_A          222 IADNHNNFNLTI  233 (286)
T ss_dssp             EEECSSSCEEEE
T ss_pred             EEeCCCCEEEEE
Confidence            6666654 5543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.10  E-value=1e-08  Score=107.33  Aligned_cols=193  Identities=5%  Similarity=0.005  Sum_probs=133.0

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-CCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      ...+.++++++ ++.++++.. ++.|.+||......    ..+. .....+.+++++++|. ++++...++.        
T Consensus        66 ~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~----~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~--------  130 (270)
T 1rwi_B           66 LYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ----TVLPFDGLNYPEGLAVDTQGA-VYVADRGNNR--------  130 (270)
T ss_dssp             CCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC----EECCCCSCSSEEEEEECTTCC-EEEEEGGGTE--------
T ss_pred             cCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE----eeeecCCcCCCcceEECCCCC-EEEEECCCCE--------
Confidence            35688999998 566666655 88999999875321    2222 2235689999999887 6777666666        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ  779 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~  779 (860)
                             |.+|+..+.   ............+.+++++|+|. ++++...++.|.+||..+... ......+...+.+++
T Consensus       131 -------i~~~~~~~~---~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~  198 (270)
T 1rwi_B          131 -------VVKLAAGSK---TQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIA  198 (270)
T ss_dssp             -------EEEECTTCC---SCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEE
T ss_pred             -------EEEEECCCc---eeEeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCce-EeecccCCCCceEEE
Confidence                   888865443   21111222334678899999997 677777788999999887654 222223336789999


Q ss_pred             EcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         780 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       780 fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++++|. ++++...++.|.+||.......              .....+...+.+++++++|. ++++...++.|++
T Consensus       199 ~d~~g~-l~v~~~~~~~v~~~~~~~~~~~--------------~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~  259 (270)
T 1rwi_B          199 VDEAGT-VYVTEHNTNQVVKLLAGSTTST--------------VLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVK  259 (270)
T ss_dssp             ECTTCC-EEEEETTTSCEEEECTTCSCCE--------------ECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEE
T ss_pred             ECCCCC-EEEEECCCCcEEEEcCCCCcce--------------eeccCCCCCceeEEECCCCC-EEEEECCCCEEEE
Confidence            999994 5666667889999998652211              11112335689999999998 7888888888875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.06  E-value=1.8e-08  Score=109.30  Aligned_cols=207  Identities=10%  Similarity=0.070  Sum_probs=129.3

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      +...+.+++|++ ++.+++++..++.|.+||..++..   ......+...+.+++|+++|+ +++++..++.        
T Consensus        43 ~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~--------  109 (333)
T 2dg1_A           43 KGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEI---KRPFVSHKANPAAIKIHKDGR-LFVCYLGDFK--------  109 (333)
T ss_dssp             SCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE---EEEEECSSSSEEEEEECTTSC-EEEEECTTSS--------
T ss_pred             cCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcE---EEEeeCCCCCcceEEECCCCc-EEEEeCCCCC--------
Confidence            444568899998 677888888899999999987532   222224567899999999997 5666655410        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC------CCcEEEEeCCCCceeeEEeccCCC
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA------DKTVALWDLRNLKLKLHSFESHKD  773 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~------Dg~I~IWDl~~~~~~~~~~~~h~~  773 (860)
                         ..+.|.+||..++.. ..+.....+...+.+++++|+|. ++++...      .+.|..||..+...  ..+..+..
T Consensus       110 ---~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~  182 (333)
T 2dg1_A          110 ---STGGIFAATENGDNL-QDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTV--TPIIQNIS  182 (333)
T ss_dssp             ---SCCEEEEECTTSCSC-EEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCE--EEEEEEES
T ss_pred             ---CCceEEEEeCCCCEE-EEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEE--EEeecCCC
Confidence               012288999876532 10111112446789999999997 4655543      35566666655443  22223334


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC-cccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIG-EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~-~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      .+..++|+|+|+.++++.+.++.|.+||+.+.. ......      ........++ ..+.+++++++|. ++++...++
T Consensus       183 ~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~------~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~  254 (333)
T 2dg1_A          183 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG------ATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQG  254 (333)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE------EEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTT
T ss_pred             cccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccccc------ceEEEecCCC-CCCCceEECCCCC-EEEEEcCCC
Confidence            578999999998656666678999999986421 111000      0011112222 4678899999998 455555555


Q ss_pred             eE
Q psy4578         853 IM  854 (860)
Q Consensus       853 ~I  854 (860)
                      .|
T Consensus       255 ~v  256 (333)
T 2dg1_A          255 RV  256 (333)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.05  E-value=1.3e-08  Score=110.84  Aligned_cols=183  Identities=11%  Similarity=0.162  Sum_probs=127.6

Q ss_pred             cccceeeeEeeccCCcEEEEEeCC------------------------CcEEEEEcCCCCcccCeeecc-CCCCCeeEEE
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADD------------------------QKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLS  674 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~D------------------------G~I~IWd~~~~~~~~~~~~~~-~h~~~V~~l~  674 (860)
                      ..+.+.+++++| +++++++.+.+                        +.|.+||..++..   ..... ++-.....++
T Consensus        22 ~l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~p~gia   97 (329)
T 3fvz_A           22 LPGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---LQSSGKNLFYLPHGLS   97 (329)
T ss_dssp             CCSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE---EEEECTTTCSSEEEEE
T ss_pred             ecCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE---EeccCCCccCCceEEE
Confidence            357799999998 67888887777                        4799999987543   33322 3445789999


Q ss_pred             EccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee---------cCCCCCeEEEEEcC-CCCcEE
Q psy4578         675 FNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV---------DAHTAEVNCLSFNP-YSEYIL  744 (860)
Q Consensus       675 ~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~---------~~h~~~I~sl~~sp-~g~~ll  744 (860)
                      ++++|+ ++++...++.               |++||.....  ..+..+         .++.....+++++| ++. ++
T Consensus        98 ~d~~g~-l~v~d~~~~~---------------v~~~~~~g~~--~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-ly  158 (329)
T 3fvz_A           98 IDTDGN-YWVTDVALHQ---------------VFKLDPHSKE--GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VF  158 (329)
T ss_dssp             ECTTSC-EEEEETTTTE---------------EEEECTTCSS--CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EE
T ss_pred             ECCCCC-EEEEECCCCE---------------EEEEeCCCCe--EEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EE
Confidence            999998 6888877777               8889875431  133333         24455789999999 566 67


Q ss_pred             EEee-CCCcEEEEeCCCCceeeEEecc----------CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccc
Q psy4578         745 ATGS-ADKTVALWDLRNLKLKLHSFES----------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED  813 (860)
Q Consensus       745 asgs-~Dg~I~IWDl~~~~~~~~~~~~----------h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~  813 (860)
                      ++.+ .++.|++||.. +.. +..+..          +-....+++++|++..++++...+++|++||..++.....+. 
T Consensus       159 v~d~~~~~~I~~~~~~-g~~-~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~-  235 (329)
T 3fvz_A          159 VSDGYCNSRIVQFSPS-GKF-VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK-  235 (329)
T ss_dssp             EEECSSCCEEEEECTT-SCE-EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-
T ss_pred             EEeCCCCCeEEEEcCC-CCE-EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe-
Confidence            7776 68999999954 443 444432          223489999999955578888889999999988644322211 


Q ss_pred             ccCCCCccEEEecCccCceEEEEEcc
Q psy4578         814 AEDGPPELLFIHGGHTAKISDFSWNP  839 (860)
Q Consensus       814 ~~~~~~~~i~~~~~h~~~I~~i~~sp  839 (860)
                                 ...+...+.+++|+|
T Consensus       236 -----------~~~~~~~~~~~~~~p  250 (329)
T 3fvz_A          236 -----------HASFGRNVFAISYIP  250 (329)
T ss_dssp             -----------CTTTTTCEEEEEEET
T ss_pred             -----------ccccCCCcceeeecC
Confidence                       123455677788888

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.05  E-value=4.4e-09  Score=114.54  Aligned_cols=214  Identities=11%  Similarity=0.090  Sum_probs=120.9

Q ss_pred             eEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCC---Cc--EEEEEcCCCCcccCeeeccCCCCCeeEEEE
Q psy4578         601 EEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADD---QK--LMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  675 (860)
Q Consensus       601 ~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~D---G~--I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~  675 (860)
                      ...+++++....+...+    ..+.+++|+| +++.++.++.+   +.  |.+|++.+++.   . .+..+.. +.+++|
T Consensus        42 ~~~l~~~d~~~~~~~~l----~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g~~---~-~l~~~~~-~~~~~w  111 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI----ENATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETLSS---K-KILEAKN-IRSLEW  111 (347)
T ss_dssp             EEEEEEEETTTCCEEEE----ESCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTTEE---E-EEEEESE-EEEEEE
T ss_pred             cceEEEEeCCCCceEEc----ccCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCCce---E-EEEcCCC-ccceeE
Confidence            34455666555443333    5788999999 66666665543   33  77777776422   2 2222234 999999


Q ss_pred             ccCCCeEEEEEeCCCc---e-----eeeccccc---ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEE
Q psy4578         676 NPYSEYILATGSADKT---Q-----FEVEEEEE---ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  744 (860)
Q Consensus       676 sp~g~~llasgs~Dg~---i-----~~~~~~~~---~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~ll  744 (860)
                      +|+|+.++.++.....   -     ..+..+..   ......|.+||+.+++   .+..+.. . .+..++|+|+|  ++
T Consensus       112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~---~~~~l~~-~-~~~~~~~spdg--~~  184 (347)
T 2gop_A          112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE---VIEEFEK-P-RFSSGIWHRDK--IV  184 (347)
T ss_dssp             CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE---EEEEEEE-E-TTCEEEEETTE--EE
T ss_pred             CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe---EEeeecC-C-CcccccCCCCe--EE
Confidence            9999975555432100   0     00000000   0113458999998752   2133333 3 78899999999  57


Q ss_pred             EEeeCCC-------cEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC--------CcEEEEECCCCCccc
Q psy4578         745 ATGSADK-------TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD--------RRLHVWDLSKIGEEQ  809 (860)
Q Consensus       745 asgs~Dg-------~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D--------g~I~iWdl~~~~~~~  809 (860)
                      ++++.++       ...||.+.++.  ...+..+ ..+.++  +|+|+. |+.++.+        +.|.+||  ++..  
T Consensus       185 ~~~~~~~~~~~~~~~~~l~~~d~~~--~~~l~~~-~~~~~~--spdg~~-l~~~~~~~~~~~~~~~~l~~~d--~~~~--  254 (347)
T 2gop_A          185 VNVPHREIIPQYFKFWDIYIWEDGK--EEKMFEK-VSFYAV--DSDGER-ILLYGKPEKKYMSEHNKLYIYD--GKEV--  254 (347)
T ss_dssp             EEEECCCSSCCSSCCEEEEEEETTE--EEEEEEE-ESEEEE--EECSSC-EEEEECCSSSCCCSSCEEEEEC--SSCE--
T ss_pred             EEEecccccccccccccEEEeCCCc--eEEeccC-cceeeE--CCCCCE-EEEEEccccCCccccceEEEEC--CCce--
Confidence            6765542       34455444433  3334334 455544  999997 4455433        4677787  3211  


Q ss_pred             ccccccCCCCccEEEecCccCceEE-EEEccCCCeEEEEEeCCCeEee
Q psy4578         810 STEDAEDGPPELLFIHGGHTAKISD-FSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       810 ~~~~~~~~~~~~i~~~~~h~~~I~~-i~~spdg~~Llasgs~Dg~IrI  856 (860)
                                  .....+|...+.. +.|+ +|  ++++++.++.+++
T Consensus       255 ------------~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l  287 (347)
T 2gop_A          255 ------------MGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNL  287 (347)
T ss_dssp             ------------EESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEE
T ss_pred             ------------EeccccCCcccCCccEEc-Cc--EEEEEecCCcEEE
Confidence                        1122345566775 8898 77  6777888877665

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.03  E-value=2.9e-08  Score=107.54  Aligned_cols=220  Identities=10%  Similarity=0.047  Sum_probs=132.8

Q ss_pred             EEeeccchhhhhhhh-hcccceeeeEeeccCCcEEEEEeCC----CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC
Q psy4578         604 MYLENKTRAQICQLL-DKLRLLIDVAWHLLHESLFGSVADD----QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY  678 (860)
Q Consensus       604 l~l~n~~~~~l~~l~-~~~~~V~~v~~sp~~~~~lasgs~D----G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~  678 (860)
                      ++.++....+..... .+...+.+++|++ ++++++++..+    +.|.+||..++...... ....+...+.+++++|+
T Consensus        68 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~  145 (333)
T 2dg1_A           68 IFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSK  145 (333)
T ss_dssp             EEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTT
T ss_pred             EEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCC
Confidence            444555444443333 3456799999998 67777777666    68999998875321111 11124467899999999


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL  758 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl  758 (860)
                      |. ++++...+..         ....+.|..||..++    ....+..+...+.+++|+|+|..++++.+.++.|.+||.
T Consensus       146 g~-l~v~~~~~~~---------~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~  211 (333)
T 2dg1_A          146 GG-FYFTDFRGYS---------TNPLGGVYYVSPDFR----TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIAL  211 (333)
T ss_dssp             SC-EEEEECCCBT---------TBCCEEEEEECTTSC----CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CC-EEEEeccccc---------cCCCceEEEEeCCCC----EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence            97 4555443100         001123556665443    122222233457899999999866667677899999999


Q ss_pred             CC-CceeeE--------EeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCcc
Q psy4578         759 RN-LKLKLH--------SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT  829 (860)
Q Consensus       759 ~~-~~~~~~--------~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~  829 (860)
                      .+ +.. ..        .+.++ ..+..++++++|. ++++...++.|.+||... .....+...    .    ...+|.
T Consensus       212 ~~~g~~-~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g-~~~~~~~~~----~----~~~g~~  279 (333)
T 2dg1_A          212 EDDGVT-IQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRG-YPIGQILIP----G----RDEGHM  279 (333)
T ss_dssp             CTTSSS-EEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTTS-CEEEEEECT----T----GGGTCS
T ss_pred             cCCCcC-cccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCCC-CEEEEEEcC----C----Cccccc
Confidence            64 221 11        11222 4678899999997 566767789999999742 211111000    0    001222


Q ss_pred             CceEEEEEccCCCeEEEEEeCC
Q psy4578         830 AKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       830 ~~I~~i~~spdg~~Llasgs~D  851 (860)
                      ..+.+++|+|++..|++++..+
T Consensus       280 ~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          280 LRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             CBCCEEEECTTSCEEEEEEECG
T ss_pred             cCcceEEECCCCCEEEEEeCcc
Confidence            3688999999988777666653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.02  E-value=9.6e-09  Score=109.66  Aligned_cols=198  Identities=12%  Similarity=0.085  Sum_probs=130.0

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      +.....+++|+|+++.+++++..++.|..|+..++     ...+..+...+.+++++++|. ++++...++.        
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~--------   91 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRR--------   91 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECTTCC-EEEEETTTTE--------
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECCCCc-EEEEecCCCe--------
Confidence            34456789999954448888999999999999863     344555677899999999998 5666655566        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecC-CCCCeEEEEEcCCCCcEEEE----ee-------------CCCcEEEEeCCCC
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDA-HTAEVNCLSFNPYSEYILAT----GS-------------ADKTVALWDLRNL  761 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~-h~~~I~sl~~sp~g~~llas----gs-------------~Dg~I~IWDl~~~  761 (860)
                             |.+||..++..........+ ....+.+++++|+|. ++++    |+             ..+.|..+|.. +
T Consensus        92 -------i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g  162 (296)
T 3e5z_A           92 -------LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G  162 (296)
T ss_dssp             -------EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S
T ss_pred             -------EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-C
Confidence                   88999876532111111111 123467899999998 5766    33             13456666655 3


Q ss_pred             ceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc-cccccccCCCCccEEEecCccCceEEEEEccC
Q psy4578         762 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHTAKISDFSWNPN  840 (860)
Q Consensus       762 ~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~-~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd  840 (860)
                      .  ...+..+......++|+|+|+. +++.+.++.|.+|++...... ..         ..+.  ..+.+.+.+++++++
T Consensus       163 ~--~~~~~~~~~~~~gi~~s~dg~~-lv~~~~~~~i~~~~~~~~g~~~~~---------~~~~--~~~~~~p~~i~~d~~  228 (296)
T 3e5z_A          163 T--LSAPIRDRVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNARGETEYQ---------GVHF--TVEPGKTDGLRVDAG  228 (296)
T ss_dssp             C--EEEEECCCSSEEEEEECTTSCE-EEEETTTTEEEEEEECSSSCEEEE---------EEEE--CCSSSCCCSEEEBTT
T ss_pred             C--EEEeecCCCCCccEEECCCCCE-EEEeCCCCeEEEEEECCCCcCcCC---------CeEe--eCCCCCCCeEEECCC
Confidence            3  3444556677899999999986 477788899999998731111 00         0111  234556778999999


Q ss_pred             CCeEEEEEeCCCeEee
Q psy4578         841 EPWVICSVSEDNIMQK  856 (860)
Q Consensus       841 g~~Llasgs~Dg~IrI  856 (860)
                      |+ ++++. .+++.++
T Consensus       229 G~-l~v~~-~~~v~~~  242 (296)
T 3e5z_A          229 GL-IWASA-GDGVHVL  242 (296)
T ss_dssp             SC-EEEEE-TTEEEEE
T ss_pred             CC-EEEEc-CCeEEEE
Confidence            98 45555 4444444

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.99  E-value=3.5e-08  Score=119.23  Aligned_cols=218  Identities=10%  Similarity=-0.016  Sum_probs=140.0

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCc----------------EEEEEcCCCCcc-cCeeeccC
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQK----------------LMIWDTRSHNVS-KPSHTVDA  665 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~----------------I~IWd~~~~~~~-~~~~~~~~  665 (860)
                      .+++++...++..........+.+++|+| +++.|+.++.++.                |.+|++.++... ..+.....
T Consensus       152 ~i~v~d~~tg~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~  230 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD  230 (710)
T ss_dssp             EEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             EEEEEECCCCCCCcccccCcccceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence            56677766666554333334578899999 6777777777665                999999875321 12222233


Q ss_pred             CCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCC------CCCCCCeeeecCCCCCeEEEEEcCC
Q psy4578         666 HTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRS------HNVSKPSHTVDAHTAEVNCLSFNPY  739 (860)
Q Consensus       666 h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~------~~~~~~~~~~~~h~~~I~sl~~sp~  739 (860)
                      |...+.++.|+|+|++++++......           .+..|.+||+.+      +.  .....+..+...+.. .|+|+
T Consensus       231 ~~~~~~~~~~SpDg~~l~~~~~~~~~-----------~~~~l~~~d~~~~~~~~~~~--~~~~~l~~~~~~~~~-~~s~d  296 (710)
T 2xdw_A          231 EPKWMGGAELSDDGRYVLLSIREGCD-----------PVNRLWYCDLQQESNGITGI--LKWVKLIDNFEGEYD-YVTNE  296 (710)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECSSS-----------SCCEEEEEEGGGSSSSSCSS--CCCEEEECSSSSCEE-EEEEE
T ss_pred             CCeEEEEEEEcCCCCEEEEEEEccCC-----------CccEEEEEECcccccccCCc--cceEEeeCCCCcEEE-EEecc
Confidence            55668899999999986655542210           134599999976      32  134455556666555 58899


Q ss_pred             CCcEEEEeeCC---CcEEEEeCCCCce-eeEEeccCCC--ceEEEEEcCCCCCEEEEEECCCc--EEEEECCCCCccccc
Q psy4578         740 SEYILATGSAD---KTVALWDLRNLKL-KLHSFESHKD--EIFQVQWSPHNETILASSGTDRR--LHVWDLSKIGEEQST  811 (860)
Q Consensus       740 g~~llasgs~D---g~I~IWDl~~~~~-~~~~~~~h~~--~V~~l~fsp~g~~lL~tgs~Dg~--I~iWdl~~~~~~~~~  811 (860)
                      |..+++.+..+   +.|.+||+.++.. ....+..|..  .+.+++|++++ .+++++..|+.  |.+||+.++.     
T Consensus       297 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~-----  370 (710)
T 2xdw_A          297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGA-----  370 (710)
T ss_dssp             TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCC-----
T ss_pred             CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCC-----
Confidence            98756555443   3699999987641 1234444543  68889998655 46888888885  5556654422     


Q ss_pred             ccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578         812 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       812 ~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~  850 (860)
                               .+..+..+.+.|..+.++|++..++++.+.
T Consensus       371 ---------~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss  400 (710)
T 2xdw_A          371 ---------LLKIFPLEVGSVVGYSGQKKDTEIFYQFTS  400 (710)
T ss_dssp             ---------EEEEECCCSSEEEEEECCTTCSEEEEEEEC
T ss_pred             ---------EEEecCCCCceEEEEecCCCCCEEEEEEeC
Confidence                     223344456778889999999876666554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.96  E-value=1.2e-08  Score=123.41  Aligned_cols=215  Identities=10%  Similarity=0.024  Sum_probs=130.6

Q ss_pred             cceeeeEeeccCCcEEEEEeC-CC----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee-
Q psy4578         622 RLLIDVAWHLLHESLFGSVAD-DQ----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV-  695 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~-DG----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~-  695 (860)
                      ..+.+++|+| +++.++.++. +|    .|++||+.+++.   ..... ....+.+++|+|||+.++. ++.++.-... 
T Consensus       125 ~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~---~~~~~-~~~~~~~~~wspDg~~l~~-~~~~~~~~~~~  198 (710)
T 2xdw_A          125 VALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKE---LPDVL-ERVKFSCMAWTHDGKGMFY-NAYPQQDGKSD  198 (710)
T ss_dssp             EEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEE---EEEEE-EEECSCCEEECTTSSEEEE-EECCCCSSCCS
T ss_pred             EEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCC---Ccccc-cCcccceEEEEeCCCEEEE-EEECCcccccc
Confidence            3688999999 6666665544 33    899999988643   22111 1223678999999997544 4444320000 


Q ss_pred             cccccccCCCcEEEEeCCCCCCC-CCeeeecCCCCCeEEEEEcCCCCcEEEEeeC----CCcEEEEeCCC------Ccee
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNPYSEYILATGSA----DKTVALWDLRN------LKLK  764 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~-~~~~~~~~h~~~I~sl~~sp~g~~llasgs~----Dg~I~IWDl~~------~~~~  764 (860)
                      ...........|++|++.++... ..+.....|...+.++.|+|+|+++++++..    +..|++||+.+      +...
T Consensus       199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  278 (710)
T 2xdw_A          199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (710)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence            00001122345999999876321 1222223355668899999999985555432    56899999986      4322


Q ss_pred             eEEeccCCCceEEEEEcCCCCCEEEEEECC---CcEEEEECCCCCcccccccccCCCCccEEEecCcc--CceEEEEEcc
Q psy4578         765 LHSFESHKDEIFQVQWSPHNETILASSGTD---RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT--AKISDFSWNP  839 (860)
Q Consensus       765 ~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D---g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~--~~I~~i~~sp  839 (860)
                      ...+..+...+.. .|+|+|+.+++.+..+   +.|.+||+.+....            ....+..|.  ..+.+++|++
T Consensus       279 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------------~~~~l~~~~~~~~~~~~~~~~  345 (710)
T 2xdw_A          279 WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES------------KWKVLVPEHEKDVLEWVACVR  345 (710)
T ss_dssp             CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG------------GCEEEECCCSSCEEEEEEEET
T ss_pred             eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------------cceeccCCCCCCeEEEEEEEc
Confidence            4556666666655 4889998755555433   36999998764210            011122232  3678899986


Q ss_pred             CCCeEEEEEeCCCeEee
Q psy4578         840 NEPWVICSVSEDNIMQK  856 (860)
Q Consensus       840 dg~~Llasgs~Dg~IrI  856 (860)
                      ++. ++++...|+..+|
T Consensus       346 ~~~-lv~~~~~~g~~~l  361 (710)
T 2xdw_A          346 SNF-LVLCYLHDVKNTL  361 (710)
T ss_dssp             TTE-EEEEEEETTEEEE
T ss_pred             CCE-EEEEEEECCEEEE
Confidence            554 7888888886654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.95  E-value=3.7e-08  Score=109.04  Aligned_cols=210  Identities=9%  Similarity=0.033  Sum_probs=117.3

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEe----------CCCcEEEEEcCCCCcccCeeeccC------CC
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVA----------DDQKLMIWDTRSHNVSKPSHTVDA------HT  667 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs----------~DG~I~IWd~~~~~~~~~~~~~~~------h~  667 (860)
                      ++.++....++.........- .++|+| ++++++++.          .++.|.+||..+.+.   +..+..      +.
T Consensus        33 v~v~D~~t~~~~~~i~~g~~p-~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~---~~~i~~~~~~~~~g  107 (361)
T 2oiz_A           33 VHVYDYTNGKFLGMVPTAFNG-HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF---EKEISLPPKRVQGL  107 (361)
T ss_dssp             EEEEETTTCCEEEEEECCEEE-EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE---EEEEEECTTBCCBC
T ss_pred             EEEEECCCCeEEEEecCCCCC-ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCCcE---EEEEEcCccccccC
Confidence            444454444443333222223 899999 666666664          367899999987533   333321      23


Q ss_pred             CCeeEEEEccCCCeEEEEEeC-CCceeeecccccccCCCcEEEEeCCCCCCCCCeee-ecCCCCCeEEEEEcCCCCcEEE
Q psy4578         668 AEVNCLSFNPYSEYILATGSA-DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT-VDAHTAEVNCLSFNPYSEYILA  745 (860)
Q Consensus       668 ~~V~~l~~sp~g~~llasgs~-Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~-~~~h~~~I~sl~~sp~g~~lla  745 (860)
                      .....++++|+|++++++... +++               |.+||+.++   +.+.. +.. . ....+.+.|++...++
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~---------------v~v~d~~~~---~~~~~~i~~-~-~~~~v~~~p~~~~~~~  167 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATS---------------IGIVDVAKG---DYVEDVTAA-A-GCWSVIPQPNRPRSFM  167 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEE---------------EEEEETTTT---EEEEEEGGG-T-TEEEEEECTTSSSEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCCe---------------EEEEECCCC---cEEEEEecC-C-CcceeEEcCCCCeeEE
Confidence            456789999999986555443 566               889998876   33333 221 1 1122334454433344


Q ss_pred             EeeCCCcEEEEeCCC------------------------------------------------Cceee-EEecc------
Q psy4578         746 TGSADKTVALWDLRN------------------------------------------------LKLKL-HSFES------  770 (860)
Q Consensus       746 sgs~Dg~I~IWDl~~------------------------------------------------~~~~~-~~~~~------  770 (860)
                      +.+.||.+.+|+...                                                ....+ ..+..      
T Consensus       168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~  247 (361)
T 2oiz_A          168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK  247 (361)
T ss_dssp             EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred             EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence            555555555554432                                                11100 00000      


Q ss_pred             CC----CceEEEEEcCCCCCEEEEEE----------CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEE
Q psy4578         771 HK----DEIFQVQWSPHNETILASSG----------TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  836 (860)
Q Consensus       771 h~----~~V~~l~fsp~g~~lL~tgs----------~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~  836 (860)
                      +.    .....++|+|++..++++..          .++.|.+||+.+.              +.+.....+.  +.+++
T Consensus       248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--------------~~v~~i~~~~--p~~ia  311 (361)
T 2oiz_A          248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--------------QRVARIPGRD--ALSMT  311 (361)
T ss_dssp             HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--------------EEEEEEECTT--CCEEE
T ss_pred             ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--------------cEEEEEecCC--eeEEE
Confidence            00    00112678898887665554          1347999998874              3344444554  89999


Q ss_pred             EccCCCeEEEEEeCCCeEee
Q psy4578         837 WNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       837 ~spdg~~Llasgs~Dg~IrI  856 (860)
                      |+|||+++++++ . +.|.+
T Consensus       312 ~spdg~~l~v~n-~-~~v~v  329 (361)
T 2oiz_A          312 IDQQRNLMLTLD-G-GNVNV  329 (361)
T ss_dssp             EETTTTEEEEEC-S-SCEEE
T ss_pred             ECCCCCEEEEeC-C-CeEEE
Confidence            999999766544 4 66554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.93  E-value=5.8e-08  Score=107.40  Aligned_cols=197  Identities=11%  Similarity=0.051  Sum_probs=123.3

Q ss_pred             cceeeeEeeccCCcEEEEEe-C-CCcEEEEEcCCCCcccCeee-ccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVA-D-DQKLMIWDTRSHNVSKPSHT-VDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs-~-DG~I~IWd~~~~~~~~~~~~-~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      .....++++| ++++++++. . +++|.+||+.++   +.+.. +.. . ....+.+.|++...+++.+.||.+..+...
T Consensus       108 ~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~---~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~  181 (361)
T 2oiz_A          108 NYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKG---DYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLG  181 (361)
T ss_dssp             CCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTT---EEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred             CCcceEEECC-CCCEEEEECCCCCCeEEEEECCCC---cEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence            4577899999 666666655 3 689999999885   33444 322 1 122244555554445555556655444332


Q ss_pred             cc---------------------------------ccCCCcEEEEeCCCCCCCCCeeeecC------C----CCCeEEEE
Q psy4578         699 EE---------------------------------ENYDQKLMIWDTRSHNVSKPSHTVDA------H----TAEVNCLS  735 (860)
Q Consensus       699 ~~---------------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~------h----~~~I~sl~  735 (860)
                      ..                                 ...++.+.++|+..... .....+.-      +    ......++
T Consensus       182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~~~a  260 (361)
T 2oiz_A          182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDKAKNWVPGGYNLVG  260 (361)
T ss_dssp             TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHHHTTCEECCSSCEE
T ss_pred             CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCccccccccccCCeeEEE
Confidence            11                                 01245678888764321 11111100      0    01112378


Q ss_pred             EcCCCCcEEEEee----------CCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578         736 FNPYSEYILATGS----------ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       736 ~sp~g~~llasgs----------~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~  805 (860)
                      ++|++..++++.+          ..+.|.+||+.+.+. +..+..+.  +.+++|+|+|++ |++++. +.|.+||..++
T Consensus       261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-v~~i~~~~--p~~ia~spdg~~-l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-VARIPGRD--ALSMTIDQQRNL-MLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-EEEEECTT--CCEEEEETTTTE-EEEECS-SCEEEEECSSS
T ss_pred             EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-EEEEecCC--eeEEEECCCCCE-EEEeCC-CeEEEEECCCC
Confidence            9999887666554          134799999999886 77777766  999999999996 666665 99999999884


Q ss_pred             CcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578         806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  842 (860)
Q Consensus       806 ~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~  842 (860)
                      ..            +.+.....+......++++|+|+
T Consensus       336 ~l------------~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          336 EP------------KLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SC------------EEEEEETTSCSSEEEEEECCCSC
T ss_pred             cc------------eeeEEeccCCCCcEEEEecCCCC
Confidence            10            33444445667788899999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.92  E-value=3.8e-09  Score=116.89  Aligned_cols=185  Identities=7%  Similarity=0.014  Sum_probs=113.7

Q ss_pred             eeeeEeeccCCcEEEEEe-CCC--cEEEEEcCCCCcccCeeeccCCCCC-eeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         624 LIDVAWHLLHESLFGSVA-DDQ--KLMIWDTRSHNVSKPSHTVDAHTAE-VNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs-~DG--~I~IWd~~~~~~~~~~~~~~~h~~~-V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      +.+++|+| +++.++.+. .+|  .|.+||+.+++.    ..+..+... ...+.|+|+|++ ++.++.++.        
T Consensus        38 ~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~spdg~~-l~~~~~~~~--------  103 (396)
T 3c5m_A           38 FYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQA----VQLTEGKGDNTFGGFISTDERA-FFYVKNELN--------  103 (396)
T ss_dssp             TTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTEE----EECCCSSCBCTTTCEECTTSSE-EEEEETTTE--------
T ss_pred             eecCcCCC-CCCEEEEEEecCCCceEEEEECCCCcE----EEeecCCCCccccceECCCCCE-EEEEEcCCc--------
Confidence            78899999 566655544 333  688888876432    222223333 334789999996 666666666        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEE-------------------EEEcCCCCcEEEEe----eCCCcEEEE
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNC-------------------LSFNPYSEYILATG----SADKTVALW  756 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~s-------------------l~~sp~g~~llasg----s~Dg~I~IW  756 (860)
                             |.+||+.+++   .......+......                   +.|+|++..+++..    ..++.|.+|
T Consensus       104 -------l~~~d~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~  173 (396)
T 3c5m_A          104 -------LMKVDLETLE---EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV  173 (396)
T ss_dssp             -------EEEEETTTCC---EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred             -------EEEEECCCCC---cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence                   8888887652   22222223332222                   35678887633222    456789999


Q ss_pred             eCCCCceeeEEeccCCCceEEEEEcC-CCCCEEEEEECC------CcEEEEECCCCCcccccccccCCCCccEEEecCc-
Q psy4578         757 DLRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTD------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-  828 (860)
Q Consensus       757 Dl~~~~~~~~~~~~h~~~V~~l~fsp-~g~~lL~tgs~D------g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h-  828 (860)
                      |+.++..  ..+..+...+..+.|+| +|.. ++.++.+      ..|.+||+......               ....+ 
T Consensus       174 d~~~g~~--~~~~~~~~~~~~~~~sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~~~~~---------------~l~~~~  235 (396)
T 3c5m_A          174 DIETGEL--EVIHQDTAWLGHPIYRPFDDST-VGFCHEGPHDLVDARMWLVNEDGSNVR---------------KIKEHA  235 (396)
T ss_dssp             ETTTCCE--EEEEEESSCEEEEEEETTEEEE-EEEEECSCSSSCSCCCEEEETTSCCCE---------------ESSCCC
T ss_pred             ECCCCcE--EeeccCCcccccceECCCCCCE-EEEEecCCCCCCCceEEEEECCCCcee---------------EeeccC
Confidence            9988764  23334667889999999 7875 4444433      36888887653211               11111 


Q ss_pred             -cCceEEEEEccCCCeEEEEEeC
Q psy4578         829 -TAKISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       829 -~~~I~~i~~spdg~~Llasgs~  850 (860)
                       ...+..++|+|+|+++++++..
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~  258 (396)
T 3c5m_A          236 EGESCTHEFWIPDGSAMAYVSYF  258 (396)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEE
T ss_pred             CCccccceEECCCCCEEEEEecC
Confidence             2357889999999986666544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.92  E-value=1.1e-07  Score=101.94  Aligned_cols=205  Identities=11%  Similarity=0.032  Sum_probs=128.2

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-C-CCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-A-HTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-~-h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      .....+.++++++ +++++++ . ++.|.+||..++.. ..+.... + ....+.+++++|+|+ ++++....+..    
T Consensus        51 ~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~----  121 (297)
T 3g4e_A           51 TMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSA-VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETA----  121 (297)
T ss_dssp             ECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEE-EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSB----
T ss_pred             eCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcE-EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccc----
Confidence            3456789999998 5665554 4 56899999887532 1122111 1 124578999999998 45544322210    


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC--CCce----eeEEecc
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NLKL----KLHSFES  770 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~--~~~~----~~~~~~~  770 (860)
                        ........-.+|.+...   .....+..+....+.++|+|+++.++++.+.++.|.+||+.  ++..    ....+..
T Consensus       122 --~~~~~~~~~~l~~~d~~---g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~  196 (297)
T 3g4e_A          122 --PAVLERHQGALYSLFPD---HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK  196 (297)
T ss_dssp             --TTBCCTTCEEEEEECTT---SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG
T ss_pred             --cccccCCCcEEEEEECC---CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC
Confidence              00000111344444332   11222223344568999999999777777888999999974  4432    1222333


Q ss_pred             CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc-cCCCeEEEEEe
Q psy4578         771 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-PNEPWVICSVS  849 (860)
Q Consensus       771 h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s-pdg~~Llasgs  849 (860)
                      +......++++++|. +.++...++.|..||..+++              .+.....+...+++++|. |+++.|+++..
T Consensus       197 ~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~--------------~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          197 EEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGK--------------RLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             GGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCC--------------EEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCce--------------EEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            446788999999996 56677778899999987643              333344455679999998 89998888887


Q ss_pred             CCC
Q psy4578         850 EDN  852 (860)
Q Consensus       850 ~Dg  852 (860)
                      .++
T Consensus       262 ~~~  264 (297)
T 3g4e_A          262 RDG  264 (297)
T ss_dssp             CTT
T ss_pred             CcC
Confidence            654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.91  E-value=1.6e-07  Score=110.20  Aligned_cols=180  Identities=13%  Similarity=0.106  Sum_probs=129.3

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcC--CCCcccCeeeccCCCCCeeEEEEc----c
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTR--SHNVSKPSHTVDAHTAEVNCLSFN----P  677 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~--~~~~~~~~~~~~~h~~~V~~l~~s----p  677 (860)
                      +.+.+..+.++...+.....+..+.|+| +++++++++.||.|.+||+.  +.   +.+..+.. ......++|+    |
T Consensus       179 V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~---~~v~~i~~-G~~P~~ia~s~~~~p  253 (567)
T 1qks_A          179 IALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEP---TTVAEIKI-GSEARSIETSKMEGW  253 (567)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSC---CEEEEEEC-CSEEEEEEECCSTTC
T ss_pred             EEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCC---cEeEEEec-CCCCceeEEccccCC
Confidence            4444555555555555555677999999 78888888899999999996  43   33444443 3346899999    6


Q ss_pred             CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC----------C-CCCeEEEEEcCCCCcEEEE
Q psy4578         678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA----------H-TAEVNCLSFNPYSEYILAT  746 (860)
Q Consensus       678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~----------h-~~~I~sl~~sp~g~~llas  746 (860)
                      +|++++++...+++               +.++|..+.   +.+..+..          | ...+..+..++++..++++
T Consensus       254 DGk~l~v~n~~~~~---------------v~ViD~~t~---~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~  315 (567)
T 1qks_A          254 EDKYAIAGAYWPPQ---------------YVIMDGETL---EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  315 (567)
T ss_dssp             TTTEEEEEEEETTE---------------EEEEETTTC---CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             CCCEEEEEEccCCe---------------EEEEECCCC---cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence            99987777777777               999998775   33333321          1 2267888999988766777


Q ss_pred             eeCCCcEEEEeCCCCcee-eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578         747 GSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       747 gs~Dg~I~IWDl~~~~~~-~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~  807 (860)
                      ...+|.|.++|....... +... .......++.|+|+|+++++++..++.|.++|+.+++.
T Consensus       316 ~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl  376 (567)
T 1qks_A          316 VKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL  376 (567)
T ss_dssp             ETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred             ecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence            777899999999876432 2222 23456778999999998777777889999999998654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.91  E-value=1.2e-07  Score=101.30  Aligned_cols=214  Identities=11%  Similarity=0.087  Sum_probs=127.6

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccC-eeecc-CCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKP-SHTVD-AHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~-~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      +...+.+++++++++.++++.. ++.|.+||.. ++.... ..... .....+.+++++++|+ ++++...++.... ..
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~-~~  144 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPA-DY  144 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTS-CC
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccc-cc
Confidence            3456889999983266555544 4478899987 432111 11111 1224588999999997 4555544310000 00


Q ss_pred             c-ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEc----CCCCcEEEEeeCCCcEEEEeCC-CCce----eeEE
Q psy4578         698 E-EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN----PYSEYILATGSADKTVALWDLR-NLKL----KLHS  767 (860)
Q Consensus       698 ~-~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~s----p~g~~llasgs~Dg~I~IWDl~-~~~~----~~~~  767 (860)
                      . ......+.|..||.. +   . ...+..+......++|+    |+++.++++...++.|.+||.. ++..    ....
T Consensus       145 ~~~~~~~~~~l~~~~~~-g---~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~  219 (314)
T 1pjx_A          145 TRSMQEKFGSIYCFTTD-G---Q-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH  219 (314)
T ss_dssp             CBTTSSSCEEEEEECTT-S---C-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred             cccccCCCCeEEEECCC-C---C-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE
Confidence            0 000111236666654 2   2 12222233456889999    9997666666778999999986 3331    1223


Q ss_pred             eccCC-CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEE
Q psy4578         768 FESHK-DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC  846 (860)
Q Consensus       768 ~~~h~-~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Lla  846 (860)
                      +..+. ..+..++++++|. ++++...++.|.+||..++...              .....+...+.+++|+++|++|++
T Consensus       220 ~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~--------------~~~~~~~~~~~~i~~~~dg~~l~v  284 (314)
T 1pjx_A          220 IPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPK--------------MRIRCPFEKPSNLHFKPQTKTIFV  284 (314)
T ss_dssp             CCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCS--------------EEEECSSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEe--------------EEEeCCCCCceeEEECCCCCEEEE
Confidence            33343 6688999999996 5667677899999998753321              122234467899999999997666


Q ss_pred             EEeCCC-eEeec
Q psy4578         847 SVSEDN-IMQKP  857 (860)
Q Consensus       847 sgs~Dg-~IrI~  857 (860)
                      +...++ +.+++
T Consensus       285 ~~~~~~~l~~~~  296 (314)
T 1pjx_A          285 TEHENNAVWKFE  296 (314)
T ss_dssp             EETTTTEEEEEE
T ss_pred             EeCCCCeEEEEe
Confidence            665544 44443

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.89  E-value=6.4e-09  Score=115.02  Aligned_cols=209  Identities=14%  Similarity=0.102  Sum_probs=119.1

Q ss_pred             EEeeccchhhhhhhhhccccee-eeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         604 MYLENKTRAQICQLLDKLRLLI-DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~-~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      ++.++....+...+..+...+. .+.|+| +++.|+.++.++.|.+||+.+++.   ......+..      |+++|.. 
T Consensus        62 l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~---~~~~~~~~~------~~~~g~~-  130 (396)
T 3c5m_A           62 YYLLNLETQQAVQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLEE---QVIYTVDEE------WKGYGTW-  130 (396)
T ss_dssp             EEEEETTTTEEEECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCCE---EEEEECCTT------EEEEEEE-
T ss_pred             EEEEECCCCcEEEeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCCc---EEEEecccc------cCCCCCE-
Confidence            4555655555555554444433 488998 788888888888999999987532   222222222      4444433 


Q ss_pred             EEEEeCCCceeee------cccc---------cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC-CCCcEEEE
Q psy4578         683 LATGSADKTQFEV------EEEE---------EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP-YSEYILAT  746 (860)
Q Consensus       683 lasgs~Dg~i~~~------~~~~---------~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp-~g~~llas  746 (860)
                      ++..+.++....+      .-+.         ....++.|.+||+.+++    ...+..+...+..+.|+| ++.. ++.
T Consensus       131 l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~----~~~~~~~~~~~~~~~~sp~dg~~-l~~  205 (396)
T 3c5m_A          131 VANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE----LEVIHQDTAWLGHPIYRPFDDST-VGF  205 (396)
T ss_dssp             EECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC----EEEEEEESSCEEEEEEETTEEEE-EEE
T ss_pred             EEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc----EEeeccCCcccccceECCCCCCE-EEE
Confidence            2221111100000      0000         01234569999998753    223334667889999999 7775 443


Q ss_pred             eeCC------CcEEEEeCCCCceeeEEeccC--CCceEEEEEcCCCCCEEEEEECC----CcEEEEECCCCCcccccccc
Q psy4578         747 GSAD------KTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILASSGTD----RRLHVWDLSKIGEEQSTEDA  814 (860)
Q Consensus       747 gs~D------g~I~IWDl~~~~~~~~~~~~h--~~~V~~l~fsp~g~~lL~tgs~D----g~I~iWdl~~~~~~~~~~~~  814 (860)
                      ++.+      ..|.+||+.+...  ..+..+  ...+..++|+|+|+.+++++..+    +.|++||+.++...      
T Consensus       206 ~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~------  277 (396)
T 3c5m_A          206 CHEGPHDLVDARMWLVNEDGSNV--RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE------  277 (396)
T ss_dssp             EECSCSSSCSCCCEEEETTSCCC--EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE------
T ss_pred             EecCCCCCCCceEEEEECCCCce--eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE------
Confidence            3333      4688999876553  233333  23578899999999744443322    44999998764321      


Q ss_pred             cCCCCccEEEecCccCceEEEEEcc-CCCeEEEE
Q psy4578         815 EDGPPELLFIHGGHTAKISDFSWNP-NEPWVICS  847 (860)
Q Consensus       815 ~~~~~~~i~~~~~h~~~I~~i~~sp-dg~~Llas  847 (860)
                            .+....+    .. +.|+| +|++++++
T Consensus       278 ------~l~~~~~----~~-~~~s~~dg~~l~~~  300 (396)
T 3c5m_A          278 ------EVMVMPP----CS-HLMSNFDGSLMVGD  300 (396)
T ss_dssp             ------EEEECCS----EE-EEEECSSSSEEEEE
T ss_pred             ------EeeeCCC----CC-CCccCCCCceEEEe
Confidence                  1111122    22 88999 99965543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.89  E-value=4e-08  Score=106.92  Aligned_cols=201  Identities=10%  Similarity=0.138  Sum_probs=121.2

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeC---------------------------CCcEEEEEcCCCC
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVAD---------------------------DQKLMIWDTRSHN  655 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~---------------------------DG~I~IWd~~~~~  655 (860)
                      .++.++...++...+..... +.+++|+| +++.|+.++.                           ...|.+||+.+++
T Consensus        86 ~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           86 EIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             EEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             eEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence            35566655555555555555 99999999 5666665543                           2578899998753


Q ss_pred             cccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC-CCcEEEEeCCCCCCCCCeeeecCCCCCeEEE
Q psy4578         656 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY-DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCL  734 (860)
Q Consensus       656 ~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~-dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl  734 (860)
                      .   +..+.. . .+..+.|+|+|  ++++++.++..       .... ...|.++|  ++    ....+..+ ..+.++
T Consensus       164 ~---~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~-------~~~~~~~~l~~~d--~~----~~~~l~~~-~~~~~~  222 (347)
T 2gop_A          164 V---IEEFEK-P-RFSSGIWHRDK--IVVNVPHREII-------PQYFKFWDIYIWE--DG----KEEKMFEK-VSFYAV  222 (347)
T ss_dssp             E---EEEEEE-E-TTCEEEEETTE--EEEEEECCCSS-------CCSSCCEEEEEEE--TT----EEEEEEEE-ESEEEE
T ss_pred             E---EeeecC-C-CcccccCCCCe--EEEEEeccccc-------ccccccccEEEeC--CC----ceEEeccC-cceeeE
Confidence            2   122323 3 78899999999  56666554310       0000 12244555  32    22333334 445544


Q ss_pred             EEcCCCCcEEEEeeCC-------CcEEEEeCCCCceeeEEeccCCCceEE-EEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         735 SFNPYSEYILATGSAD-------KTVALWDLRNLKLKLHSFESHKDEIFQ-VQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       735 ~~sp~g~~llasgs~D-------g~I~IWDl~~~~~~~~~~~~h~~~V~~-l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                        +|+|+++++++..+       +.|.+||  ++.. ......+...+.. +.|+ +|  ++++++.++.+++| +.++.
T Consensus       223 --spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g~  293 (347)
T 2gop_A          223 --DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDGE  293 (347)
T ss_dssp             --EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESSS
T ss_pred             --CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCCc
Confidence              99999744444322       4688888  4432 3333456677886 9999 77  68899999999999 87311


Q ss_pred             cccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         807 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       807 ~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                                    .. ....+.+.|.+++|+|  . ++++++.++.
T Consensus       294 --------------~~-~~~~~~~~v~~~~~s~--~-~~~~~~~~~~  322 (347)
T 2gop_A          294 --------------IK-PIAKGRHWIMGFDVDE--I-VVYLKETATR  322 (347)
T ss_dssp             --------------EE-EEECSSSEEEEEEESS--S-EEEEEECSSS
T ss_pred             --------------eE-EEecCCCeEEeeeeeC--c-EEEEEcCCCC
Confidence                          11 1223467899999999  4 4555555543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.89  E-value=1e-07  Score=99.70  Aligned_cols=190  Identities=8%  Similarity=-0.016  Sum_probs=124.8

Q ss_pred             ceeeeEeeccCCcEEE-EEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         623 LLIDVAWHLLHESLFG-SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       623 ~V~~v~~sp~~~~~la-sgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      ...++++++ ++.+++ +.+.++.|.+|+..+...   ......+...+.+++++++|. ++++.. ++.          
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~----------   88 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGT---TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNR----------   88 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCC-EEEEET-TTE----------
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCccc---ceEeeCCcCCcceeEECCCCC-EEEEcC-CCE----------
Confidence            677899998 567777 546788999999765321   111122335678999999888 566655 666          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeec-CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEE
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW  780 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~f  780 (860)
                           |.+||.....    ...+. .....+.+++++|+|. ++++...++.|.+||..+... ..........+.++++
T Consensus        89 -----i~~~d~~~~~----~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~  157 (270)
T 1rwi_B           89 -----VVTLAAGSNN----QTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAV  157 (270)
T ss_dssp             -----EEEECTTCSC----CEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCEEE
T ss_pred             -----EEEEeCCCce----EeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCcee-EeeccccCCCceeEEE
Confidence                 8889876542    12222 2235789999999997 677777788999998765543 2212223346788999


Q ss_pred             cCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         781 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       781 sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      +++|+ ++++...++.|.+||.......              .....+...+.+++++++|. ++++...++.|.
T Consensus       158 ~~~g~-l~v~~~~~~~i~~~~~~~~~~~--------------~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~  216 (270)
T 1rwi_B          158 DNSGN-VYVTDTDNNRVVKLEAESNNQV--------------VLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVV  216 (270)
T ss_dssp             CTTCC-EEEEEGGGTEEEEECTTTCCEE--------------ECCCSSCCSEEEEEECTTCC-EEEEETTTSCEE
T ss_pred             eCCCC-EEEEECCCCEEEEEecCCCceE--------------eecccCCCCceEEEECCCCC-EEEEECCCCcEE
Confidence            99997 5767767889999998763221              11112235688999999996 666666555443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.86  E-value=8.5e-08  Score=115.62  Aligned_cols=211  Identities=11%  Similarity=0.010  Sum_probs=127.3

Q ss_pred             cceeeeEeeccCCcEEE-E----EeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         622 RLLIDVAWHLLHESLFG-S----VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~la-s----gs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      ..+.+++|+| +++.+| +    |+.+..|++||+.+++... ...+..  ....+++|+|||+. |+.++.|..-  -.
T Consensus       121 ~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~--~~~~~~~wspDg~~-l~~~~~d~~~--~~  193 (695)
T 2bkl_A          121 VSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEG--GKYATPKWTPDSKG-FYYEWLPTDP--SI  193 (695)
T ss_dssp             EEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSC--CTTCCCEECTTSSE-EEEEECCCCT--TS
T ss_pred             EEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCc--ccccceEEecCCCE-EEEEEecCCC--CC
Confidence            4688999999 566666 3    3334689999999864320 111111  11268999999997 5555554320  00


Q ss_pred             ccccccCCCcEEEEeCCCCCCC-CCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-C--cEEEEeCCCCceeeEEeccCC
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-K--TVALWDLRNLKLKLHSFESHK  772 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~-~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g--~I~IWDl~~~~~~~~~~~~h~  772 (860)
                      ..........|++|++.++... ..+.....|...+.++.|+|+|+++++++..+ +  .|++||..++.  ...+..+.
T Consensus       194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~  271 (695)
T 2bkl_A          194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD--FRLLVKGV  271 (695)
T ss_dssp             CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS--CEEEEECS
T ss_pred             ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc--eEEeecCC
Confidence            0011122445999999876321 12333344566889999999999855444433 2  56777665443  34455566


Q ss_pred             CceEEEEEcCCCCCEEEEEE---CCCcEEEEECCCCCcccccccccCCCCccEEEecCc-cCceEEEEEccCCCeEEEEE
Q psy4578         773 DEIFQVQWSPHNETILASSG---TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       773 ~~V~~l~fsp~g~~lL~tgs---~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h-~~~I~~i~~spdg~~Llasg  848 (860)
                      ..+....| ++|. +++++.   .++.|.+||+.+....           ........+ ...+.+++|+ + ..++++.
T Consensus       272 ~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~-----------~~~~l~~~~~~~~l~~~~~~-~-~~lv~~~  336 (695)
T 2bkl_A          272 GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA-----------SWKEIVPEDSSASLLSVSIV-G-GHLSLEY  336 (695)
T ss_dssp             SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG-----------GCEEEECCCSSCEEEEEEEE-T-TEEEEEE
T ss_pred             CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc-----------CCeEEecCCCCCeEEEEEEE-C-CEEEEEE
Confidence            66667767 6777 666655   3588999998764320           001111222 4467888888 4 4578889


Q ss_pred             eCCCeEee
Q psy4578         849 SEDNIMQK  856 (860)
Q Consensus       849 s~Dg~IrI  856 (860)
                      ..|+..++
T Consensus       337 ~~dg~~~l  344 (695)
T 2bkl_A          337 LKDATSEV  344 (695)
T ss_dssp             EETTEEEE
T ss_pred             EECCEEEE
Confidence            88888776

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.83  E-value=3.3e-07  Score=107.45  Aligned_cols=186  Identities=10%  Similarity=0.085  Sum_probs=133.3

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578         633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDT  712 (860)
Q Consensus       633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl  712 (860)
                      ++.++++...+++|.+||..+++   .+..+.. ...+..+.|+|+|++ +.+++.|+.               |.+||+
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~---v~~~i~~-g~~p~~v~~SpDGr~-lyv~~~dg~---------------V~viD~  225 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYE---IKTVLDT-GYAVHISRLSASGRY-LFVIGRDGK---------------VNMIDL  225 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCC---EEEEEEC-SSCEEEEEECTTSCE-EEEEETTSE---------------EEEEET
T ss_pred             CceEEEEeCCCCeEEEEECCCCe---EEEEEeC-CCCccceEECCCCCE-EEEEcCCCe---------------EEEEEC
Confidence            45567778889999999998853   3444432 345679999999997 555667777               999999


Q ss_pred             C--CCCCCCCeeeecCCCCCeEEEEEc----CCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc----------C-CCce
Q psy4578         713 R--SHNVSKPSHTVDAHTAEVNCLSFN----PYSEYILATGSADKTVALWDLRNLKLKLHSFES----------H-KDEI  775 (860)
Q Consensus       713 ~--~~~~~~~~~~~~~h~~~I~sl~~s----p~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~----------h-~~~V  775 (860)
                      .  +.   +.+..+.. ......++|+    |+|++++++...+++|.++|..+.+. +..+..          | ...+
T Consensus       226 ~~~t~---~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rv  300 (567)
T 1qks_A          226 WMKEP---TTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRV  300 (567)
T ss_dssp             TSSSC---CEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCE
T ss_pred             CCCCC---cEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCce
Confidence            5  44   44455543 3346789999    69998777777789999999988776 444331          1 1267


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         776 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      ..+..+++++.++++...+|.|.++|........            +.. ........++.|+|+|+++++++..++.|.
T Consensus       301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~------------v~~-i~~~~~~~d~~~~pdgr~~~va~~~sn~V~  367 (567)
T 1qks_A          301 AAILASHYRPEFIVNVKETGKILLVDYTDLNNLK------------TTE-ISAERFLHDGGLDGSHRYFITAANARNKLV  367 (567)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE------------EEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred             EEEEEcCCCCEEEEEecCCCeEEEEecCCCccce------------eee-eeccccccCceECCCCCEEEEEeCCCCeEE
Confidence            8899999988767777788999999987633110            111 122345678899999999888887666665


Q ss_pred             e
Q psy4578         856 K  856 (860)
Q Consensus       856 I  856 (860)
                      +
T Consensus       368 V  368 (567)
T 1qks_A          368 V  368 (567)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.81  E-value=1.5e-07  Score=102.61  Aligned_cols=211  Identities=11%  Similarity=0.127  Sum_probs=135.0

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC-----CCeeEEEEccC
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT-----AEVNCLSFNPY  678 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~-----~~V~~l~~sp~  678 (860)
                      +..++....++...+........+++++ ++.++++...++.|.+||..+++.   ...+....     .....+++  +
T Consensus        66 v~viD~~t~~~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~---~~~i~~g~~~~~~~~p~~i~~--~  139 (328)
T 3dsm_A           66 IFAIDINTFKEVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEI---TGYIECPDMDMESGSTEQMVQ--Y  139 (328)
T ss_dssp             EEEEETTTCCEEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEE---EEEEECTTCCTTTCBCCCEEE--E
T ss_pred             EEEEECcccEEEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeE---EEEEEcCCccccCCCcceEEE--E
Confidence            4444555555544444556788999987 456666555889999999987532   22222211     14556777  4


Q ss_pred             CCeEEEEEe-CCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-------
Q psy4578         679 SEYILATGS-ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-------  750 (860)
Q Consensus       679 g~~llasgs-~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-------  750 (860)
                      +..++++.. .++.               |.+||..++   +....+.. ......++++|+|+ +++++..+       
T Consensus       140 ~~~lyv~~~~~~~~---------------v~viD~~t~---~~~~~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~  199 (328)
T 3dsm_A          140 GKYVYVNCWSYQNR---------------ILKIDTETD---KVVDELTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYG  199 (328)
T ss_dssp             TTEEEEEECTTCCE---------------EEEEETTTT---EEEEEEEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSC
T ss_pred             CCEEEEEcCCCCCE---------------EEEEECCCC---eEEEEEEc-CCCccceEEcCCCC-EEEEECCCccCCccc
Confidence            555566654 3666               999999876   33333332 23457889999998 46666554       


Q ss_pred             ---CcEEEEeCCCCceeeEEeccC-CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec
Q psy4578         751 ---KTVALWDLRNLKLKLHSFESH-KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG  826 (860)
Q Consensus       751 ---g~I~IWDl~~~~~~~~~~~~h-~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~  826 (860)
                         +.|.+||..+.+. ...+... ......++|+|+++. ++.+..  .|.+||..+.......         .   ..
T Consensus       200 ~~~~~v~~id~~t~~v-~~~~~~~~g~~p~~la~~~d~~~-lyv~~~--~v~~~d~~t~~~~~~~---------~---~~  263 (328)
T 3dsm_A          200 YEAPSLYRIDAETFTV-EKQFKFKLGDWPSEVQLNGTRDT-LYWINN--DIWRMPVEADRVPVRP---------F---LE  263 (328)
T ss_dssp             BCCCEEEEEETTTTEE-EEEEECCTTCCCEEEEECTTSCE-EEEESS--SEEEEETTCSSCCSSC---------S---BC
T ss_pred             cCCceEEEEECCCCeE-EEEEecCCCCCceeEEEecCCCE-EEEEcc--EEEEEECCCCceeeee---------e---ec
Confidence               7899999998875 4444322 346899999999986 444433  8999999875532110         0   01


Q ss_pred             CccCceEEEEEccCCCeEEEEE----eCCCeEee
Q psy4578         827 GHTAKISDFSWNPNEPWVICSV----SEDNIMQK  856 (860)
Q Consensus       827 ~h~~~I~~i~~spdg~~Llasg----s~Dg~IrI  856 (860)
                      .......+++++|++..++++.    ..++.|.+
T Consensus       264 ~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v  297 (328)
T 3dsm_A          264 FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR  297 (328)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEE
T ss_pred             CCCCceEEEEEcCCCCeEEEEcccccccCCEEEE
Confidence            1145688999999666678887    55666553

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.79  E-value=1.3e-06  Score=92.09  Aligned_cols=196  Identities=3%  Similarity=-0.012  Sum_probs=131.3

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      ...+.++++.+ ++.++++...++.|.+||. ++.. . ..........+.++++.++|. ++++...++.         
T Consensus        98 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~-~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~---------  163 (299)
T 2z2n_A           98 DSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKI-R-EYELPNKGSYPSFITLGSDNA-LWFTENQNNA---------  163 (299)
T ss_dssp             TCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCE-E-EEECSSTTCCEEEEEECTTSC-EEEEETTTTE---------
T ss_pred             CCCceeeEECC-CCCEEEEecCCceEEEECC-CCCE-E-EecCCCCCCCCceEEEcCCCC-EEEEeCCCCE---------
Confidence            34688999997 6778787777889999998 4322 1 112223446789999999886 5666655565         


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEE
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW  780 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~f  780 (860)
                            |..||. ++.. . ......+...+.+++++++|. ++++...++.|.+||. ++.........+...+.++++
T Consensus       164 ------i~~~~~-~g~~-~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~  232 (299)
T 2z2n_A          164 ------IGRITE-SGDI-T-EFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITA  232 (299)
T ss_dssp             ------EEEECT-TCCE-E-EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred             ------EEEEcC-CCcE-E-EeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEE
Confidence                  788887 4321 1 111223445688999999987 5666666889999999 555322223345577899999


Q ss_pred             cCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeecc
Q psy4578         781 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKPF  858 (860)
Q Consensus       781 sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~f  858 (860)
                      +++|. ++++...++.|..||... . ..            ......+...+.++++ ++|. ++++.+.++++++.-
T Consensus       233 ~~~g~-l~v~~~~~~~i~~~d~~g-~-~~------------~~~~~~~~~~~~~i~~-~~g~-l~v~~~~~~l~~~~~  293 (299)
T 2z2n_A          233 GAGID-LWFTEWGANKIGRLTSNN-I-IE------------EYPIQIKSAEPHGICF-DGET-IWFAMECDKIGKLTL  293 (299)
T ss_dssp             CSTTC-EEEEETTTTEEEEEETTT-E-EE------------EEECSSSSCCEEEEEE-CSSC-EEEEETTTEEEEEEE
T ss_pred             CCCCC-EEEeccCCceEEEECCCC-c-eE------------EEeCCCCCCccceEEe-cCCC-EEEEecCCcEEEEEc
Confidence            99997 455555778999999732 1 10            1112234567899999 8888 566666788888753

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.77  E-value=1.6e-07  Score=104.35  Aligned_cols=135  Identities=16%  Similarity=0.116  Sum_probs=102.0

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      ...+ |+.++|   ++.+|+++ .+|.|++||+.+..   .......|...+.++.+.+.  . +++++.||.       
T Consensus        86 ~lp~-V~~l~f---d~~~L~v~-~~~~l~v~dv~sl~---~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~-------  147 (388)
T 1xip_A           86 EIPD-VIFVCF---HGDQVLVS-TRNALYSLDLEELS---EFRTVTSFEKPVFQLKNVNN--T-LVILNSVND-------  147 (388)
T ss_dssp             ECTT-EEEEEE---ETTEEEEE-ESSEEEEEESSSTT---CEEEEEECSSCEEEEEECSS--E-EEEEETTSE-------
T ss_pred             eCCC-eeEEEE---CCCEEEEE-cCCcEEEEEchhhh---ccCccceeecceeeEEecCC--C-EEEEECCCC-------
Confidence            3445 999999   57888888 88999999998743   23344556777888887754  3 788889998       


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee-eEEe------c--
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-LHSF------E--  769 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~-~~~~------~--  769 (860)
                              +.+||+.++..   . .   +...|+|++|||+|   ++.|..||++++|+..+.... ...+      .  
T Consensus       148 --------L~v~dl~~~~~---~-~---~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~  209 (388)
T 1xip_A          148 --------LSALDLRTKST---K-Q---LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEEL  209 (388)
T ss_dssp             --------EEEEETTTCCE---E-E---EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTS
T ss_pred             --------EEEEEccCCcc---c-c---ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccc
Confidence                    99999987632   1 1   45689999999999   467889999999998876631 2233      2  


Q ss_pred             -cCCCceEEEEEcCCCCCEEE
Q psy4578         770 -SHKDEIFQVQWSPHNETILA  789 (860)
Q Consensus       770 -~h~~~V~~l~fsp~g~~lL~  789 (860)
                       +|...|.++.|.+++.++++
T Consensus       210 ~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          210 PVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             CTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCCeeEEEEEEecCCeEEEE
Confidence             37889999999999986443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.73  E-value=2.4e-06  Score=90.10  Aligned_cols=193  Identities=8%  Similarity=-0.004  Sum_probs=126.7

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      ...+.++++.+ ++.++++...++.|.+||.. +.. . ......+...+.+++++++|. ++++...++.         
T Consensus        14 ~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~-~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~---------   79 (299)
T 2z2n_A           14 DTGPYGITVSD-KGKVWITQHKANMISCINLD-GKI-T-EYPLPTPDAKVMCLTISSDGE-VWFTENAANK---------   79 (299)
T ss_dssp             SCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCE-E-EEECSSTTCCEEEEEECTTSC-EEEEETTTTE---------
T ss_pred             CCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCe-E-EecCCcccCceeeEEECCCCC-EEEeCCCCCe---------
Confidence            45788999998 67777776668899999987 432 1 111223456789999999887 5666655666         


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEE
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW  780 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~f  780 (860)
                            |..||.. +.  ............+.+++++|+|. ++++...++.|..||. ++.........+...+.++++
T Consensus        80 ------i~~~~~~-g~--~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~  148 (299)
T 2z2n_A           80 ------IGRITKK-GI--IKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITL  148 (299)
T ss_dssp             ------EEEECTT-SC--EEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred             ------EEEECCC-Cc--EEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEE
Confidence                  7777764 21  11111122455789999999987 5777667889999998 444322233334567899999


Q ss_pred             cCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         781 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       781 sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      +++|. ++++...++.|..||. ++...             ..........+.+++++++|. ++++...++.|
T Consensus       149 ~~~g~-l~v~~~~~~~i~~~~~-~g~~~-------------~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i  206 (299)
T 2z2n_A          149 GSDNA-LWFTENQNNAIGRITE-SGDIT-------------EFKIPTPASGPVGITKGNDDA-LWFVEIIGNKI  206 (299)
T ss_dssp             CTTSC-EEEEETTTTEEEEECT-TCCEE-------------EEECSSTTCCEEEEEECTTSS-EEEEETTTTEE
T ss_pred             cCCCC-EEEEeCCCCEEEEEcC-CCcEE-------------EeeCCCCCCcceeEEECCCCC-EEEEccCCceE
Confidence            99996 4666656789999997 42211             011122345678999999988 55555444433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.72  E-value=1.2e-06  Score=98.70  Aligned_cols=227  Identities=7%  Similarity=0.001  Sum_probs=133.3

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCC--cEEEEEcCCCCcccCeeeccC-CCCCeeEEEEccCCC
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQ--KLMIWDTRSHNVSKPSHTVDA-HTAEVNCLSFNPYSE  680 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG--~I~IWd~~~~~~~~~~~~~~~-h~~~V~~l~~sp~g~  680 (860)
                      +..++.....+..+........ ++|++ +++.++++..++  .|.+|+...+.....+..... ....+.+++++|++.
T Consensus       154 I~~id~~~g~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g  231 (409)
T 3hrp_A          154 VRLISVDDNKVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE  231 (409)
T ss_dssp             EEEEETTTTEEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS
T ss_pred             EEEEECCCCEEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC
Confidence            3344444444443333333344 99998 566777777655  788888765422111111112 456778999999666


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeee--ecCCCCCe--EEEEEcCCCCcEEEEeeCCCcEEEE
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT--VDAHTAEV--NCLSFNPYSEYILATGSADKTVALW  756 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~--~~~h~~~I--~sl~~sp~g~~llasgs~Dg~I~IW  756 (860)
                      .+++ +..++.               |..||..++.. ..+..  ..++...-  ..++|+|++..++++...++.|+.|
T Consensus       232 ~lyv-~d~~~~---------------I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~  294 (409)
T 3hrp_A          232 WLYF-VDSNKN---------------FGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKI  294 (409)
T ss_dssp             EEEE-ECTTCE---------------EEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eEEE-EECCCc---------------EEEEECCCCCE-EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEE
Confidence            5555 555666               88888876421 11100  11222222  3899999766678887888999999


Q ss_pred             eCCCCceeeEEeccCC---------------CceEEEEEcCCCCCEEEEEE-CCCcEEEEECCCCCcccccccccCCCCc
Q psy4578         757 DLRNLKLKLHSFESHK---------------DEIFQVQWSPHNETILASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPE  820 (860)
Q Consensus       757 Dl~~~~~~~~~~~~h~---------------~~V~~l~fsp~g~~lL~tgs-~Dg~I~iWdl~~~~~~~~~~~~~~~~~~  820 (860)
                      |.....   ..+.++.               .....++++|+|. ++++-+ .+++|+.|++..+... .+.........
T Consensus       295 ~~~g~~---~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~  369 (409)
T 3hrp_A          295 TPDGEC---EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQ  369 (409)
T ss_dssp             CTTCCE---EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSC
T ss_pred             ecCCCE---EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCc
Confidence            987542   2232222               4578999999997 677777 7899999997653321 11100000000


Q ss_pred             cE-EEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         821 LL-FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       821 ~i-~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      .- ......-....+++++++|. |+++...++.|+
T Consensus       370 ~~g~~~~~~~~~P~giavd~~g~-lyVad~~n~~Ir  404 (409)
T 3hrp_A          370 IDGTPLEATFNYPYDICYDGEGG-YWIAEAWGKAIR  404 (409)
T ss_dssp             CCBSTTTCCBSSEEEEEECSSSE-EEEEESTTCEEE
T ss_pred             CCCChhceEeCCceEEEEcCCCC-EEEEECCCCeEE
Confidence            00 00001124588999999976 777888877776

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.71  E-value=5.5e-07  Score=108.50  Aligned_cols=213  Identities=6%  Similarity=-0.086  Sum_probs=133.2

Q ss_pred             EEEEeeccchhhhhhhhhcccce--eeeEeeccCCcEEEEEeCCCc-------------EEEEEcCCCCcc-cCeeeccC
Q psy4578         602 EVMYLENKTRAQICQLLDKLRLL--IDVAWHLLHESLFGSVADDQK-------------LMIWDTRSHNVS-KPSHTVDA  665 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~~~~~~V--~~v~~sp~~~~~lasgs~DG~-------------I~IWd~~~~~~~-~~~~~~~~  665 (860)
                      ..+++++..+++... ..+...+  .+++|+| ++..|+.++.|+.             |++|++.++... ..+.....
T Consensus       147 ~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~  224 (695)
T 2bkl_A          147 AVLHVIDVDSGEWSK-VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG  224 (695)
T ss_dssp             CEEEEEETTTCCBCS-SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC
T ss_pred             EEEEEEECCCCCCcC-CcccCcccccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC
Confidence            456667766665431 1122223  7899999 6777777777765             999999875321 12333344


Q ss_pred             CCCCeeEEEEccCCCeEEEEEeCC-CceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEE
Q psy4578         666 HTAEVNCLSFNPYSEYILATGSAD-KTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  744 (860)
Q Consensus       666 h~~~V~~l~~sp~g~~llasgs~D-g~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~ll  744 (860)
                      +...+.++.|+|+|++++++...+ +.             ..|.+||..++    ....+..+...+....| ++|. ++
T Consensus       225 ~~~~~~~~~~SpDG~~l~~~~~~~~~~-------------~~l~~~~~~~~----~~~~l~~~~~~~~~~~~-~~g~-l~  285 (695)
T 2bkl_A          225 DPTTFLQSDLSRDGKYLFVYILRGWSE-------------NDVYWKRPGEK----DFRLLVKGVGAKYEVHA-WKDR-FY  285 (695)
T ss_dssp             CTTCEEEEEECTTSCCEEEEEEETTTE-------------EEEEEECTTCS----SCEEEEECSSCCEEEEE-ETTE-EE
T ss_pred             CCEEEEEEEECCCCCEEEEEEeCCCCc-------------eEEEEEcCCCC----ceEEeecCCCceEEEEe-cCCc-EE
Confidence            556889999999999866655443 22             22666655433    23344455566666667 6676 67


Q ss_pred             EEee---CCCcEEEEeCCCCce--eeEEeccC-CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578         745 ATGS---ADKTVALWDLRNLKL--KLHSFESH-KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  818 (860)
Q Consensus       745 asgs---~Dg~I~IWDl~~~~~--~~~~~~~h-~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~  818 (860)
                      +++.   .++.|.+||+.++..  .......+ ...+.+++|+ ++ .+++++..|+..++|.+....            
T Consensus       286 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g------------  351 (695)
T 2bkl_A          286 VLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKG------------  351 (695)
T ss_dssp             EEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTC------------
T ss_pred             EEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCC------------
Confidence            6665   358899999987642  12223333 4568888888 44 578899999998888765311            


Q ss_pred             CccEEEecCc-cCceEEEEEccCCCeEEEEEeC
Q psy4578         819 PELLFIHGGH-TAKISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       819 ~~~i~~~~~h-~~~I~~i~~spdg~~Llasgs~  850 (860)
                       .....+..+ .+.|..++++|++..++++.+.
T Consensus       352 -~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss  383 (695)
T 2bkl_A          352 -KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS  383 (695)
T ss_dssp             -CEEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred             -CeeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence             111222222 4567778888888776655544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.69  E-value=1.9e-06  Score=93.51  Aligned_cols=196  Identities=10%  Similarity=0.010  Sum_probs=121.3

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-C-CCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-A-HTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-~-h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      ...+.++.|++ ++++++++ .+ .|.+||..++... .+.... . ....+.+++++|+|+. +++...+..       
T Consensus        89 ~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~~-------  156 (326)
T 2ghs_A           89 PFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRKA-------  156 (326)
T ss_dssp             SSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSCE-EEEEEETTC-------
T ss_pred             CCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEE-EEeeCCCCCCCCCCCCEEECCCCCE-EEEeCCCcC-------
Confidence            45789999998 56666644 44 4999998775421 111111 1 1245889999999984 444332110       


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC--CC-ce----eeEEeccC
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR--NL-KL----KLHSFESH  771 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~--~~-~~----~~~~~~~h  771 (860)
                        ....+.|..++  ++    .+..+..+......++|+|+++.++++.+.++.|.+||+.  ++ ..    ....+...
T Consensus       157 --~~~~~~l~~~~--~g----~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~  228 (326)
T 2ghs_A          157 --ETGAGSIYHVA--KG----KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI  228 (326)
T ss_dssp             --CTTCEEEEEEE--TT----EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS
T ss_pred             --CCCceEEEEEe--CC----cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC
Confidence              00112255555  22    1222222334567899999998766676778899999986  44 21    12223334


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc-cCCCeEEEEEeC
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-PNEPWVICSVSE  850 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s-pdg~~Llasgs~  850 (860)
                      ......++++++|. ++++...++.|..||... +              .+.....+...+++++|+ +++..|+++...
T Consensus       229 ~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g-~--------------~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          229 KGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG-N--------------HIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             SSEEEEEEECTTSC-EEEEEETTTEEEEECTTC-C--------------EEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCCCeeEECCCCC-EEEEEeCCCEEEEECCCC-C--------------EEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            45678899999996 465655678899998732 2              222333345579999998 898888777766


Q ss_pred             CC
Q psy4578         851 DN  852 (860)
Q Consensus       851 Dg  852 (860)
                      ++
T Consensus       293 ~~  294 (326)
T 2ghs_A          293 EH  294 (326)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.65  E-value=4.2e-07  Score=96.54  Aligned_cols=174  Identities=11%  Similarity=0.046  Sum_probs=116.6

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC-CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT-AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDT  712 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~-~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl  712 (860)
                      ++++++++.|+.|.+||.+++   +.+..+..+. ..+.++.+.|+|+ ++++  .++.               |..||.
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~~~~~~pdG~-ilvs--~~~~---------------V~~~d~   63 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTK---EIVWEYPLEKGWECNSVAATKAGE-ILFS--YSKG---------------AKMITR   63 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTT---EEEEEEECCTTCCCCEEEECTTSC-EEEE--CBSE---------------EEEECT
T ss_pred             CcEEEeeCCCCEEEEEECCCC---eEEEEeCCCccCCCcCeEECCCCC-EEEe--CCCC---------------EEEECC
Confidence            688999999999999999885   4455555554 4789999999998 4553  3454               788887


Q ss_pred             CCCCCCCCeeeecCC-CCCeEEEEEcCCCCcEEEEeeC-CCcEEEEeCCCCceeeEEec------cCCCceEEEEEcCCC
Q psy4578         713 RSHNVSKPSHTVDAH-TAEVNCLSFNPYSEYILATGSA-DKTVALWDLRNLKLKLHSFE------SHKDEIFQVQWSPHN  784 (860)
Q Consensus       713 ~~~~~~~~~~~~~~h-~~~I~sl~~sp~g~~llasgs~-Dg~I~IWDl~~~~~~~~~~~------~h~~~V~~l~fsp~g  784 (860)
                       ++   +.+..+..+ ...+.++.+.|+|.. +++.+. ++.|..+|.. ++. +..+.      .+......+++.++|
T Consensus        64 -~G---~~~W~~~~~~~~~~~~~~~~~dG~~-lv~~~~~~~~v~~vd~~-Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G  136 (276)
T 3no2_A           64 -DG---RELWNIAAPAGCEMQTARILPDGNA-LVAWCGHPSTILEVNMK-GEV-LSKTEFETGIERPHAQFRQINKNKKG  136 (276)
T ss_dssp             -TS---CEEEEEECCTTCEEEEEEECTTSCE-EEEEESTTEEEEEECTT-SCE-EEEEEECCSCSSGGGSCSCCEECTTS
T ss_pred             -CC---CEEEEEcCCCCccccccEECCCCCE-EEEecCCCCEEEEEeCC-CCE-EEEEeccCCCCcccccccCceECCCC
Confidence             55   455555543 346889999999995 666665 7788888864 433 33332      122244556788999


Q ss_pred             CCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         785 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       785 ~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                      .. +++...++.|..||.. ++.......              . ..+.++...++|.. +++++.++.
T Consensus       137 ~~-lv~~~~~~~v~~~d~~-G~~~w~~~~--------------~-~~~~~~~~~~~g~~-~v~~~~~~~  187 (276)
T 3no2_A          137 NY-LVPLFATSEVREIAPN-GQLLNSVKL--------------S-GTPFSSAFLDNGDC-LVACGDAHC  187 (276)
T ss_dssp             CE-EEEETTTTEEEEECTT-SCEEEEEEC--------------S-SCCCEEEECTTSCE-EEECBTTSE
T ss_pred             CE-EEEecCCCEEEEECCC-CCEEEEEEC--------------C-CCccceeEcCCCCE-EEEeCCCCe
Confidence            84 7888899999999987 554433221              1 23445566677773 445554443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.65  E-value=1.9e-06  Score=93.75  Aligned_cols=183  Identities=9%  Similarity=0.027  Sum_probs=122.4

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN  702 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~  702 (860)
                      ...++.+.  ++.++++...++.|.+||..+++   .+..+. .......+++++++ .++++...++.           
T Consensus        45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~---~~~~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~-----------  106 (328)
T 3dsm_A           45 VAQSMVIR--DGIGWIVVNNSHVIFAIDINTFK---EVGRIT-GFTSPRYIHFLSDE-KAYVTQIWDYR-----------  106 (328)
T ss_dssp             CEEEEEEE--TTEEEEEEGGGTEEEEEETTTCC---EEEEEE-CCSSEEEEEEEETT-EEEEEEBSCSE-----------
T ss_pred             cceEEEEE--CCEEEEEEcCCCEEEEEECcccE---EEEEcC-CCCCCcEEEEeCCC-eEEEEECCCCe-----------
Confidence            35677775  56777777788999999999854   344443 34678899999888 56666656777           


Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCC-----CCeEEEEEcCCCCcEEEEee-CCCcEEEEeCCCCceeeEEeccCCCceE
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHT-----AEVNCLSFNPYSEYILATGS-ADKTVALWDLRNLKLKLHSFESHKDEIF  776 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~-----~~I~sl~~sp~g~~llasgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~  776 (860)
                          |.+||..+.   +....+....     .....+++  ++..++++.. .++.|.+||..+++. ...+.. .....
T Consensus       107 ----v~~iD~~t~---~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~-~~~i~~-g~~p~  175 (328)
T 3dsm_A          107 ----IFIINPKTY---EITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKV-VDELTI-GIQPT  175 (328)
T ss_dssp             ----EEEEETTTT---EEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEE-EEEEEC-SSCBC
T ss_pred             ----EEEEECCCC---eEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeE-EEEEEc-CCCcc
Confidence                999998876   2222332211     14556777  3454566654 489999999998875 444443 33456


Q ss_pred             EEEEcCCCCCEEEEEECC----------CcEEEEECCCCCcccccccccCCCCccEEEec-CccCceEEEEEccCCCeEE
Q psy4578         777 QVQWSPHNETILASSGTD----------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWVI  845 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~D----------g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~-~h~~~I~~i~~spdg~~Ll  845 (860)
                      .++++|+|+ +++++..+          +.|.+||..+.+..              .... ........++|+|++++++
T Consensus       176 ~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~--------------~~~~~~~g~~p~~la~~~d~~~ly  240 (328)
T 3dsm_A          176 SLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVE--------------KQFKFKLGDWPSEVQLNGTRDTLY  240 (328)
T ss_dssp             CCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE--------------EEEECCTTCCCEEEEECTTSCEEE
T ss_pred             ceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEE--------------EEEecCCCCCceeEEEecCCCEEE
Confidence            789999997 45565544          78999998874322              1111 1123578999999999776


Q ss_pred             EEEe
Q psy4578         846 CSVS  849 (860)
Q Consensus       846 asgs  849 (860)
                      ++.+
T Consensus       241 v~~~  244 (328)
T 3dsm_A          241 WINN  244 (328)
T ss_dssp             EESS
T ss_pred             EEcc
Confidence            6543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.64  E-value=1.9e-06  Score=92.07  Aligned_cols=197  Identities=13%  Similarity=0.149  Sum_probs=122.7

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY  703 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~  703 (860)
                      .-+..|++.++.++++...++.|..||..++..    ..+ .....+.+++++++|+ ++++ ..+ .            
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----~~~-~~~~~~~~i~~~~dG~-l~v~-~~~-~------------   74 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----QRV-TMDAPVSSVALRQSGG-YVAT-IGT-K------------   74 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----EEE-ECSSCEEEEEEBTTSS-EEEE-ETT-E------------
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----EEE-eCCCceEEEEECCCCC-EEEE-ECC-e------------
Confidence            347889987778888888899999999987432    222 2356799999999998 3444 333 3            


Q ss_pred             CCcEEEEeCCCCCCCCCeeeecC--CCCCeEEEEEcCCCCcEEEEeeCC---------CcEEEEeCCCCceeeEEeccCC
Q psy4578         704 DQKLMIWDTRSHNVSKPSHTVDA--HTAEVNCLSFNPYSEYILATGSAD---------KTVALWDLRNLKLKLHSFESHK  772 (860)
Q Consensus       704 dg~I~iwDl~~~~~~~~~~~~~~--h~~~I~sl~~sp~g~~llasgs~D---------g~I~IWDl~~~~~~~~~~~~h~  772 (860)
                         |.+||..++.. ..+.....  ....++.++++|+|. ++++...+         ..-.+|.+..... ......+.
T Consensus        75 ---l~~~d~~~g~~-~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~  148 (297)
T 3g4e_A           75 ---FCALNWKEQSA-VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQV  148 (297)
T ss_dssp             ---EEEEETTTTEE-EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEE
T ss_pred             ---EEEEECCCCcE-EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC-EEEEeecc
Confidence               88888876521 11111111  123478899999998 45543221         2334554443222 22233334


Q ss_pred             CceEEEEEcCCCCCEEEEEECCCcEEEEECC--CCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578         773 DEIFQVQWSPHNETILASSGTDRRLHVWDLS--KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~--~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~  850 (860)
                      ...+.++|+|+++.++++.+.++.|..|++.  ++...         ..+.......+.+...+++++++|. +.++...
T Consensus       149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~---------~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~  218 (297)
T 3g4e_A          149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS---------NRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYN  218 (297)
T ss_dssp             SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE---------EEEEEEECCGGGCEEEEEEEBTTSC-EEEEEET
T ss_pred             ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc---------CcEEEEECCCCCCCCCeeEECCCCC-EEEEEcC
Confidence            5678999999998766777778999999974  22110         0122233333446678899999997 5656555


Q ss_pred             CC-eEee
Q psy4578         851 DN-IMQK  856 (860)
Q Consensus       851 Dg-~IrI  856 (860)
                      ++ +.++
T Consensus       219 ~~~v~~~  225 (297)
T 3g4e_A          219 GGRVIRL  225 (297)
T ss_dssp             TTEEEEE
T ss_pred             CCEEEEE
Confidence            55 4444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.63  E-value=1.9e-06  Score=91.42  Aligned_cols=202  Identities=11%  Similarity=0.009  Sum_probs=126.7

Q ss_pred             EEEEeeccchhhhhhhhhcc--cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC-CCCeeEEEEccC
Q psy4578         602 EVMYLENKTRAQICQLLDKL--RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH-TAEVNCLSFNPY  678 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~~~~--~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h-~~~V~~l~~sp~  678 (860)
                      ..++.++...+++...+...  ..+.++.+.| ++++++  +.++.|..||. ++   +.+..+..+ ...+.++.+.++
T Consensus        15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G---~~~W~~~~~~~~~~~~~~~~~d   87 (276)
T 3no2_A           15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DG---RELWNIAAPAGCEMQTARILPD   87 (276)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TS---CEEEEEECCTTCEEEEEEECTT
T ss_pred             CEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CC---CEEEEEcCCCCccccccEECCC
Confidence            34555666455544444333  3688999998 678877  45778999998 54   344455443 357889999999


Q ss_pred             CCeEEEEEeC-CCceeeecccccccCCCcEEEEeCCCCCCCCCeeeec------CCCCCeEEEEEcCCCCcEEEEeeCCC
Q psy4578         679 SEYILATGSA-DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD------AHTAEVNCLSFNPYSEYILATGSADK  751 (860)
Q Consensus       679 g~~llasgs~-Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~------~h~~~I~sl~~sp~g~~llasgs~Dg  751 (860)
                      |+. +++.+. ++.               +..+|. ++   +.+..+.      .+......++..++|. ++++.+.++
T Consensus        88 G~~-lv~~~~~~~~---------------v~~vd~-~G---k~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~  146 (276)
T 3no2_A           88 GNA-LVAWCGHPST---------------ILEVNM-KG---EVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATS  146 (276)
T ss_dssp             SCE-EEEEESTTEE---------------EEEECT-TS---CEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTT
T ss_pred             CCE-EEEecCCCCE---------------EEEEeC-CC---CEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCC
Confidence            995 555554 555               333333 11   1111111      1222345567899998 488888999


Q ss_pred             cEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCc
Q psy4578         752 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK  831 (860)
Q Consensus       752 ~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~  831 (860)
                      .|..||.. ++. +..+... ....++.+.++|. ++++++.+++|..+|..+++............        .....
T Consensus       147 ~v~~~d~~-G~~-~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~--------~~l~~  214 (276)
T 3no2_A          147 EVREIAPN-GQL-LNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVNANDIEG--------VQLFF  214 (276)
T ss_dssp             EEEEECTT-SCE-EEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEEGGGSBS--------CCCSE
T ss_pred             EEEEECCC-CCE-EEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC--------ccccc
Confidence            99999998 665 5556543 4556778889987 47778888899999988766544332111000        01123


Q ss_pred             eEEEEEccCCCe
Q psy4578         832 ISDFSWNPNEPW  843 (860)
Q Consensus       832 I~~i~~spdg~~  843 (860)
                      +..++..++|..
T Consensus       215 ~~~~~~~~~G~i  226 (276)
T 3no2_A          215 VAQLFPLQNGGL  226 (276)
T ss_dssp             EEEEEECTTSCE
T ss_pred             cccceEcCCCCE
Confidence            666777777774

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.62  E-value=9.9e-07  Score=94.16  Aligned_cols=203  Identities=6%  Similarity=0.035  Sum_probs=123.2

Q ss_pred             ccceeeeEeeccCCcEEEE-------EeCCCcEEEEEcCCCCcccCeee--ccCCCCCeeEEEEccC-CCeEEEEEeCCC
Q psy4578         621 LRLLIDVAWHLLHESLFGS-------VADDQKLMIWDTRSHNVSKPSHT--VDAHTAEVNCLSFNPY-SEYILATGSADK  690 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~las-------gs~DG~I~IWd~~~~~~~~~~~~--~~~h~~~V~~l~~sp~-g~~llasgs~Dg  690 (860)
                      .....+++|++ ++.++++       +..++.|.+||..+++.. ....  ..++...+.+++++++ |. +++++..+ 
T Consensus        17 ~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~-   92 (314)
T 1pjx_A           17 IPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRL-   92 (314)
T ss_dssp             CTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSE-EEEEETTT-
T ss_pred             CCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCc-EEEEECCC-
Confidence            34567899996 6777777       577889999998765321 1110  0124467899999998 65 45555433 


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCe-eee-c-CCCCCeEEEEEcCCCCcEEEEeeCC---------------Cc
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPS-HTV-D-AHTAEVNCLSFNPYSEYILATGSAD---------------KT  752 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~-~~~-~-~h~~~I~sl~~sp~g~~llasgs~D---------------g~  752 (860)
                      .               |.+||.. ++. ..+ ... . .....+.+++++++|. ++++...+               +.
T Consensus        93 ~---------------l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~  154 (314)
T 1pjx_A           93 G---------------LLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGS  154 (314)
T ss_dssp             E---------------EEEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred             C---------------EEEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCe
Confidence            3               7788876 421 111 110 1 1124578999999997 46665544               56


Q ss_pred             EEEEeCCCCceeeEEeccCCCceEEEEEc----CCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCc
Q psy4578         753 VALWDLRNLKLKLHSFESHKDEIFQVQWS----PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH  828 (860)
Q Consensus       753 I~IWDl~~~~~~~~~~~~h~~~V~~l~fs----p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h  828 (860)
                      |..||.. +..  ..+..+......++|+    |+|+.++++...++.|.+||.........        ........++
T Consensus       155 l~~~~~~-g~~--~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~--------~~~~~~~~~~  223 (314)
T 1pjx_A          155 IYCFTTD-GQM--IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN--------KKVWGHIPGT  223 (314)
T ss_dssp             EEEECTT-SCE--EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE--------EEEEEECCCC
T ss_pred             EEEECCC-CCE--EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc--------ceEEEECCCC
Confidence            7777765 332  2222334456889999    99976566666789999999762111000        0122233334


Q ss_pred             c-CceEEEEEccCCCeEEEEEeC-CCeEeec
Q psy4578         829 T-AKISDFSWNPNEPWVICSVSE-DNIMQKP  857 (860)
Q Consensus       829 ~-~~I~~i~~spdg~~Llasgs~-Dg~IrI~  857 (860)
                      . ..+.+++++++|. ++++... +++.+++
T Consensus       224 ~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d  253 (314)
T 1pjx_A          224 HEGGADGMDFDEDNN-LLVANWGSSHIEVFG  253 (314)
T ss_dssp             SSCEEEEEEEBTTCC-EEEEEETTTEEEEEC
T ss_pred             CCCCCCceEECCCCC-EEEEEcCCCEEEEEc
Confidence            3 5678899999998 4555544 4454443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.61  E-value=1.1e-06  Score=106.84  Aligned_cols=211  Identities=10%  Similarity=0.046  Sum_probs=123.1

Q ss_pred             cceeeeEeeccCCcEEEEEeC-CC----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         622 RLLIDVAWHLLHESLFGSVAD-DQ----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~-DG----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      ..+.+++|+| +++.++.++. +|    .|++||+.+++.   +.. ..+...+..++|+|| +.++ .++.++... -.
T Consensus       163 ~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~---~~~-~~~~~~~~~~~wspD-~~l~-~~~~~~~~~-~~  234 (741)
T 1yr2_A          163 TALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKP---LAD-ELKWVKFSGLAWLGN-DALL-YSRFAEPKE-GQ  234 (741)
T ss_dssp             EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCE---EEE-EEEEEESCCCEESTT-SEEE-EEECCCC-----
T ss_pred             EEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCC---CCc-cCCCceeccEEEECC-CEEE-EEEecCccc-cc
Confidence            3688999999 5666665543 34    599999998643   211 111222367899999 8644 444444200 00


Q ss_pred             ccccccCCCcEEEEeCCCCCCC-CCeeeecCCCCCeEEEEEcCCCCcEEEEeeC----CCcEEEEeCCCCcee-eEEecc
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNPYSEYILATGSA----DKTVALWDLRNLKLK-LHSFES  770 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~-~~~~~~~~h~~~I~sl~~sp~g~~llasgs~----Dg~I~IWDl~~~~~~-~~~~~~  770 (860)
                      ..........|++|++.++... ..+.....+...+.++.|+|+|+++++++..    ...|++||+.++... ...+..
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~  314 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP  314 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred             ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence            0011122445889998765321 1222223334468899999999975555432    347999999877322 344555


Q ss_pred             CCCceEEEEEcCCCCCEEEEEEC----CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEE
Q psy4578         771 HKDEIFQVQWSPHNETILASSGT----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC  846 (860)
Q Consensus       771 h~~~V~~l~fsp~g~~lL~tgs~----Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Lla  846 (860)
                      +...+.... +|+|+.++ ..+.    ++.|.+||+.+..  .          ........+...+.+++|+  +..+++
T Consensus       315 ~~~~~~~~~-~~dg~~l~-~~s~~~~~~~~l~~~d~~~~~--~----------~~~~l~~~~~~~l~~~~~~--~~~lv~  378 (741)
T 1yr2_A          315 DLKAQWDFV-DGVGDQLW-FVSGDGAPLKKIVRVDLSGST--P----------RFDTVVPESKDNLESVGIA--GNRLFA  378 (741)
T ss_dssp             SSSSCEEEE-EEETTEEE-EEECTTCTTCEEEEEECSSSS--C----------EEEEEECCCSSEEEEEEEE--BTEEEE
T ss_pred             CCCceEEEE-eccCCEEE-EEECCCCCCCEEEEEeCCCCc--c----------ccEEEecCCCCeEEEEEEE--CCEEEE
Confidence            555555554 48888744 4443    3569999987632  0          1111223344456677777  445788


Q ss_pred             EEeCCCeEee
Q psy4578         847 SVSEDNIMQK  856 (860)
Q Consensus       847 sgs~Dg~IrI  856 (860)
                      +...|+..+|
T Consensus       379 ~~~~dg~~~l  388 (741)
T 1yr2_A          379 SYIHDAKSQV  388 (741)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEECCEEEE
Confidence            8888887665

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.59  E-value=7.4e-06  Score=86.33  Aligned_cols=195  Identities=8%  Similarity=-0.008  Sum_probs=128.0

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      ...+.++++.+ ++.++++...++.|.+||.. +... . .........+.++++.++|. ++++...++.         
T Consensus        19 ~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~-~-~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~---------   84 (300)
T 2qc5_A           19 DSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIK-E-FEVPTPDAKVMCLIVSSLGD-IWFTENGANK---------   84 (300)
T ss_dssp             TCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE-E-EECSSTTCCEEEEEECTTSC-EEEEETTTTE---------
T ss_pred             CCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceE-E-EECCCCCCcceeEEECCCCC-EEEEecCCCe---------
Confidence            45778999998 67777777778999999987 4321 1 12223346789999999887 5666555565         


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEE
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW  780 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~f  780 (860)
                            |..||.. +..  ...........+.++++.++|. ++++...++.|..||.. +.............+.++++
T Consensus        85 ------v~~~d~~-g~~--~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~  153 (300)
T 2qc5_A           85 ------IGKLSKK-GGF--TEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITL  153 (300)
T ss_dssp             ------EEEECTT-SCE--EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred             ------EEEECCC-CCe--EEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEE
Confidence                  7788766 321  1112222346789999999887 57676668899999987 44322223334567899999


Q ss_pred             cCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC-eEee
Q psy4578         781 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN-IMQK  856 (860)
Q Consensus       781 sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg-~IrI  856 (860)
                      +++|+ ++++...++.|..||. .+...             ......+...+.+++++++|. ++++...++ +.++
T Consensus       154 d~~g~-l~v~~~~~~~i~~~~~-~g~~~-------------~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~  214 (300)
T 2qc5_A          154 GSDNA-LWFTENQNNSIGRITN-TGKLE-------------EYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRI  214 (300)
T ss_dssp             CTTSS-EEEEETTTTEEEEECT-TCCEE-------------EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEE
T ss_pred             CCCCC-EEEEecCCCeEEEECC-CCcEE-------------EeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEE
Confidence            99997 5666656788999987 32211             111223345688999999987 555555444 4433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.59  E-value=4.6e-06  Score=90.51  Aligned_cols=193  Identities=12%  Similarity=-0.010  Sum_probs=118.7

Q ss_pred             eeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCC
Q psy4578         625 IDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYD  704 (860)
Q Consensus       625 ~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~d  704 (860)
                      .+..|+|+++.++++...++.|..||..++..    ..+ .....+.+++|+++|+. +++ +.++              
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~----~~~-~~~~~v~~i~~~~dg~l-~v~-~~~g--------------  110 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRK----TVH-ALPFMGSALAKISDSKQ-LIA-SDDG--------------  110 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE----EEE-ECSSCEEEEEEEETTEE-EEE-ETTE--------------
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcE----EEE-ECCCcceEEEEeCCCeE-EEE-ECCC--------------
Confidence            46789986677888888889999999986422    222 13467999999999874 443 3443              


Q ss_pred             CcEEEEeCCCCCCCCCeeeec-C-CCCCeEEEEEcCCCCcEEEEeeC------CCcEEEEeCCCCceeeEEeccCCCceE
Q psy4578         705 QKLMIWDTRSHNVSKPSHTVD-A-HTAEVNCLSFNPYSEYILATGSA------DKTVALWDLRNLKLKLHSFESHKDEIF  776 (860)
Q Consensus       705 g~I~iwDl~~~~~~~~~~~~~-~-h~~~I~sl~~sp~g~~llasgs~------Dg~I~IWDl~~~~~~~~~~~~h~~~V~  776 (860)
                        |.+||..++.. ..+.... + ....+.+++++|+|.. +++...      .+.|..+|  ++..  ..+..+.....
T Consensus       111 --l~~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~~~~~~~~l~~~~--~g~~--~~~~~~~~~~~  182 (326)
T 2ghs_A          111 --LFLRDTATGVL-TLHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVA--KGKV--TKLFADISIPN  182 (326)
T ss_dssp             --EEEEETTTCCE-EEEECSSTTCTTEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEE--TTEE--EEEEEEESSEE
T ss_pred             --EEEEECCCCcE-EEEeeCCCCCCCCCCCCEEECCCCCE-EEEeCCCcCCCCceEEEEEe--CCcE--EEeeCCCcccC
Confidence              78888876531 1111111 1 1235889999999984 554432      24566666  3332  23333334578


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECC--CC-CcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe-CCC
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLS--KI-GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS-EDN  852 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~--~~-~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs-~Dg  852 (860)
                      .++|+|+|+.++++.+.++.|.+||+.  ++ ...         ..............+.+++++++|.. .++.. .++
T Consensus       183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------~~~~~~~~~~~~~~p~gi~~d~~G~l-wva~~~~~~  252 (326)
T 2ghs_A          183 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------KAEVFIDSTGIKGGMDGSVCDAEGHI-WNARWGEGA  252 (326)
T ss_dssp             EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------CCEEEEECTTSSSEEEEEEECTTSCE-EEEEETTTE
T ss_pred             CeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---------CceEEEECCCCCCCCCeeEECCCCCE-EEEEeCCCE
Confidence            899999998766666678899999986  32 110         01122222333455678999999984 44443 344


Q ss_pred             eEee
Q psy4578         853 IMQK  856 (860)
Q Consensus       853 ~IrI  856 (860)
                      +.++
T Consensus       253 v~~~  256 (326)
T 2ghs_A          253 VDRY  256 (326)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.58  E-value=2.6e-06  Score=95.88  Aligned_cols=209  Identities=6%  Similarity=0.034  Sum_probs=126.1

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      ......++|++ +++++++...++.|++||..++..   ...... ..... ++|+++++. ++++..++.         
T Consensus       130 ~~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~---~~~~~~-~~~~~-ia~~~~g~~-l~~~d~~~~---------  193 (409)
T 3hrp_A          130 FKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKV---TTVHPG-FKGGK-PAVTKDKQR-VYSIGWEGT---------  193 (409)
T ss_dssp             CCCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEE---EEEEET-CCBCB-CEECTTSSE-EEEEBSSTT---------
T ss_pred             cCCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEE---EEeecc-CCCCc-eeEecCCCc-EEEEecCCC---------
Confidence            45678999997 677888877789999999986432   122222 23334 999999996 555555441         


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeee----cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE---eccCCC
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTV----DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS---FESHKD  773 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~----~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~---~~~h~~  773 (860)
                          ..|.+|+.....   ....+    ......+.+++++|++..+++ +..++.|+.||..+.......   ..++..
T Consensus       194 ----~~I~~~d~~~~~---~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~  265 (409)
T 3hrp_A          194 ----HTVYVYMKASGW---APTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLG  265 (409)
T ss_dssp             ----CEEEEEEGGGTT---CEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCC
T ss_pred             ----ceEEEEEcCCCc---eeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCC
Confidence                027777776542   12222    214466788999995554455 667889999999877642211   122222


Q ss_pred             ce--EEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccE-EEecCccCceEEEEEccCCCeEEEEEe-
Q psy4578         774 EI--FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL-FIHGGHTAKISDFSWNPNEPWVICSVS-  849 (860)
Q Consensus       774 ~V--~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i-~~~~~h~~~I~~i~~spdg~~Llasgs-  849 (860)
                      .-  ..++|+|++..++++-..+++|+.|+....  ..............- ......-....+++++++|. ++++.+ 
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~  342 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGF  342 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETT
T ss_pred             CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCC
Confidence            22  389999975566777778899999987642  111100000000000 00001123478999999999 677777 


Q ss_pred             CCCeEee
Q psy4578         850 EDNIMQK  856 (860)
Q Consensus       850 ~Dg~IrI  856 (860)
                      .++.|+.
T Consensus       343 ~~~~I~~  349 (409)
T 3hrp_A          343 KGYCLRK  349 (409)
T ss_dssp             TTCEEEE
T ss_pred             CCCEEEE
Confidence            6666653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.56  E-value=9.1e-07  Score=106.61  Aligned_cols=211  Identities=11%  Similarity=0.107  Sum_probs=127.8

Q ss_pred             ccceeeeEeeccCCcEEE-EEeCC----CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         621 LRLLIDVAWHLLHESLFG-SVADD----QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~la-sgs~D----G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      ...+.+++|+| +++++| +.+..    ..|++||+.+++...  ..+.  ......++|+ ||+.++.+. .+..  .-
T Consensus       128 ~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~--~~~~--~~k~~~~~Ws-Dg~~l~y~~-~~~~--~~  198 (693)
T 3iuj_A          128 TTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLE--TPLK--DVKFSGISWL-GNEGFFYSS-YDKP--DG  198 (693)
T ss_dssp             CCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEE--EEEE--EEESCCCEEE-TTTEEEEEE-SSCC--C-
T ss_pred             cEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCc--cccC--CceeccEEEe-CCCEEEEEE-ecCc--cc
Confidence            34688899999 566555 33333    469999999864311  1111  1113578999 999755544 4321  00


Q ss_pred             cccccccCCCcEEEEeCCCCCCC-CCeeeecC-CCCCeEEEEEcCCCCcEEEEeeCC---CcEEEEeCCCCceeeEEecc
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVS-KPSHTVDA-HTAEVNCLSFNPYSEYILATGSAD---KTVALWDLRNLKLKLHSFES  770 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~-~~~~~~~~-h~~~I~sl~~sp~g~~llasgs~D---g~I~IWDl~~~~~~~~~~~~  770 (860)
                      ..........+|++|++.++... ..+..... |...+.++.|+|+|++++++.+.+   +.|++||+.++......+..
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~  278 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG  278 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence            00001122345899998875321 12222233 445678899999999876666533   57999999877533556666


Q ss_pred             CCCceEEEEEcCCCCCEEEEEECC---CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEE
Q psy4578         771 HKDEIFQVQWSPHNETILASSGTD---RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS  847 (860)
Q Consensus       771 h~~~V~~l~fsp~g~~lL~tgs~D---g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llas  847 (860)
                      +....... |+++|..+++.+..+   +.|..||+.+....            ....+..|...+.  .|++++.+|+++
T Consensus       279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~------------~~~~l~~~~~~~~--~~s~~g~~lv~~  343 (693)
T 3iuj_A          279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA------------HWRDLIPERQQVL--TVHSGSGYLFAE  343 (693)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG------------GCEEEECCCSSCE--EEEEETTEEEEE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------------ccEEEecCCCCEE--EEEEECCEEEEE
Confidence            66666555 677777766666554   67999998874321            0112233444444  899999988888


Q ss_pred             EeCCCeEe
Q psy4578         848 VSEDNIMQ  855 (860)
Q Consensus       848 gs~Dg~Ir  855 (860)
                      ...++.-+
T Consensus       344 ~~~~g~~~  351 (693)
T 3iuj_A          344 YMVDATAR  351 (693)
T ss_dssp             EEETTEEE
T ss_pred             EEECCeeE
Confidence            87776544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.56  E-value=4.5e-06  Score=101.30  Aligned_cols=219  Identities=11%  Similarity=0.031  Sum_probs=131.3

Q ss_pred             EEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCc--------------EEEEEcCCCCcc-cCeeeccCC
Q psy4578         602 EVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQK--------------LMIWDTRSHNVS-KPSHTVDAH  666 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~--------------I~IWd~~~~~~~-~~~~~~~~h  666 (860)
                      ..+++++...++..........+.+++|+| + +.|+.++.|+.              |.+|++.++... ..+.....+
T Consensus       189 ~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~  266 (741)
T 1yr2_A          189 RTVKFVGVADGKPLADELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL  266 (741)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEESCCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred             EEEEEEECCCCCCCCccCCCceeccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC
Confidence            456777776666544322223347899999 4 66666665543              889998765321 122222233


Q ss_pred             CCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEE
Q psy4578         667 TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT  746 (860)
Q Consensus       667 ~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llas  746 (860)
                      ...+.++.|+|||+++++++.. +.          .....|.+||+.++.. .....+..+...+.... +|+|..+++.
T Consensus       267 ~~~~~~~~~SpDG~~l~~~~~~-~~----------~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~-~~dg~~l~~~  333 (741)
T 1yr2_A          267 PKRGHGASVSSDGRWVVITSSE-GT----------DPVNTVHVARVTNGKI-GPVTALIPDLKAQWDFV-DGVGDQLWFV  333 (741)
T ss_dssp             TTCEEEEEECTTSCEEEEEEEC-TT----------CSCCEEEEEEEETTEE-CCCEEEECSSSSCEEEE-EEETTEEEEE
T ss_pred             CeEEEEEEECCCCCEEEEEEEc-cC----------CCcceEEEEECCCCCC-cccEEecCCCCceEEEE-eccCCEEEEE
Confidence            3468899999999986655543 21          0133599999876511 10334444555555553 4888864444


Q ss_pred             eeC---CCcEEEEeCCCCc-eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccE
Q psy4578         747 GSA---DKTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL  822 (860)
Q Consensus       747 gs~---Dg~I~IWDl~~~~-~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i  822 (860)
                      +..   ++.|.+||+.++. .....+..+...+.+++|+  +..++++...|+..++|.+....             ...
T Consensus       334 s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g-------------~~~  398 (741)
T 1yr2_A          334 SGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDG-------------KPA  398 (741)
T ss_dssp             ECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTS-------------CEE
T ss_pred             ECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCC-------------Cce
Confidence            332   3459999998752 2233445555567778887  44578889999988888665211             112


Q ss_pred             EEecC-ccCceEEEEEccCCCeEEEEEeC
Q psy4578         823 FIHGG-HTAKISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       823 ~~~~~-h~~~I~~i~~spdg~~Llasgs~  850 (860)
                      ..+.. +.+.|..+.++|++..++++.+.
T Consensus       399 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss  427 (741)
T 1yr2_A          399 GAVSLPGIGSASGLSGRPGDRHAYLSFSS  427 (741)
T ss_dssp             EECBCSSSCEEEEEECCBTCSCEEEEEEE
T ss_pred             eeccCCCCeEEEEeecCCCCCEEEEEEcC
Confidence            22222 35678889999998876655543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.55  E-value=1.2e-05  Score=84.55  Aligned_cols=194  Identities=5%  Similarity=-0.051  Sum_probs=125.7

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      ..+.++++.+ ++.++++...++.|..||.. +.. . ..........+.++++.++|. ++++...++.          
T Consensus        62 ~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~----------  126 (300)
T 2qc5_A           62 AKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD-IWFTQLNGDR----------  126 (300)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC-EEEEETTTTE----------
T ss_pred             CcceeEEECC-CCCEEEEecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC-EEEEccCCCe----------
Confidence            5688999987 67777777667899999987 432 1 112222346789999999887 5666655565          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEc
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS  781 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fs  781 (860)
                           |..||.. +..  ...........+.+++++++|. ++++...++.|..||. ++.........+...+.+++++
T Consensus       127 -----i~~~~~~-g~~--~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d  196 (300)
T 2qc5_A          127 -----IGKLTAD-GTI--YEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSG  196 (300)
T ss_dssp             -----EEEECTT-SCE--EEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             -----EEEECCC-CCE--EEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEEC
Confidence                 7777765 311  1111222345789999999998 5767666789999998 4443222233345678999999


Q ss_pred             CCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeC-CCeEee
Q psy4578         782 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE-DNIMQK  856 (860)
Q Consensus       782 p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~-Dg~IrI  856 (860)
                      ++|. ++++....+.|.+||. .+...             ......+...+.+++++++|. ++++... +++.++
T Consensus       197 ~~g~-l~v~~~~~~~i~~~~~-~g~~~-------------~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~  256 (300)
T 2qc5_A          197 NDGA-LWFVEIMGNKIGRITT-TGEIS-------------EYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRI  256 (300)
T ss_dssp             TTSS-EEEEETTTTEEEEECT-TCCEE-------------EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEE
T ss_pred             CCCC-EEEEccCCCEEEEEcC-CCcEE-------------EEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEE
Confidence            9986 4555556678999997 32111             111223446688999999998 5655544 344444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.51  E-value=5.5e-06  Score=99.74  Aligned_cols=217  Identities=12%  Similarity=0.103  Sum_probs=133.6

Q ss_pred             eEEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCC-------------cEEEEEcCCCCcc-cCeeeccC-
Q psy4578         601 EEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQ-------------KLMIWDTRSHNVS-KPSHTVDA-  665 (860)
Q Consensus       601 ~~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG-------------~I~IWd~~~~~~~-~~~~~~~~-  665 (860)
                      +..+++++..+++.............++|+ + ++.|+.++.+.             .|.+|++.++... ..+..... 
T Consensus       154 ~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-D-g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~  231 (693)
T 3iuj_A          154 WREIHLMDVESKQPLETPLKDVKFSGISWL-G-NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA  231 (693)
T ss_dssp             EEEEEEEETTTCSEEEEEEEEEESCCCEEE-T-TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGG
T ss_pred             eEEEEEEECCCCCCCccccCCceeccEEEe-C-CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCC
Confidence            355677777666644332112224788999 5 45555555553             3999998764321 12222233 


Q ss_pred             CCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEE
Q psy4578         666 HTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA  745 (860)
Q Consensus       666 h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~lla  745 (860)
                      |...+.++.|+|+|++++++.+.++.            .+.|.++|+.++.  .....+..+....... |+++|..+++
T Consensus       232 ~~~~~~~~~~SpDg~~l~~~~~~~~~------------~~~i~~~d~~~~~--~~~~~l~~~~~~~~~~-~~~~g~~l~~  296 (693)
T 3iuj_A          232 QHHRYVGATVTEDDRFLLISAANSTS------------GNRLYVKDLSQEN--APLLTVQGDLDADVSL-VDNKGSTLYL  296 (693)
T ss_dssp             GCCSEEEEEECTTSCEEEEEEESSSS------------CCEEEEEETTSTT--CCCEEEECSSSSCEEE-EEEETTEEEE
T ss_pred             CCeEEEEEEEcCCCCEEEEEEccCCC------------CcEEEEEECCCCC--CceEEEeCCCCceEEE-EeccCCEEEE
Confidence            45567899999999987777665432            3459999998753  2334555566655555 6777776677


Q ss_pred             EeeCC---CcEEEEeCCCCce-eeEEeccCCCceEEEEEcCCCCCEEEEEECCC--cEEEEECCCCCcccccccccCCCC
Q psy4578         746 TGSAD---KTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPP  819 (860)
Q Consensus       746 sgs~D---g~I~IWDl~~~~~-~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg--~I~iWdl~~~~~~~~~~~~~~~~~  819 (860)
                      ++..+   +.|..||+.++.. ....+..|...+.  .|++++++++++...+|  .|++||+..... ..         
T Consensus       297 ~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~---------  364 (693)
T 3iuj_A          297 LTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-RE---------  364 (693)
T ss_dssp             EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EE---------
T ss_pred             EECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EE---------
Confidence            76654   6799999987643 1244556666665  89999998666666666  688888764211 11         


Q ss_pred             ccEEEecCccCceEEEEEccCCCeEEEEEeC
Q psy4578         820 ELLFIHGGHTAKISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       820 ~~i~~~~~h~~~I~~i~~spdg~~Llasgs~  850 (860)
                          ......+.+..+.+++++..++++.+.
T Consensus       365 ----l~~p~~~~~~~~~~~~d~~~l~~~~ss  391 (693)
T 3iuj_A          365 ----VALPGLGSVSGFNGKHDDPALYFGFEN  391 (693)
T ss_dssp             ----ECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred             ----eecCCCceEEeeecCCCCCEEEEEecC
Confidence                111233456677777777766655543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.44  E-value=2.3e-05  Score=86.88  Aligned_cols=62  Identities=10%  Similarity=-0.017  Sum_probs=39.7

Q ss_pred             eeEeeccCCcEEEEEe----------CCCcEEEEEcCCCCcccCeeeccCC-------CCCeeEEEEccCCCeEEEEEeC
Q psy4578         626 DVAWHLLHESLFGSVA----------DDQKLMIWDTRSHNVSKPSHTVDAH-------TAEVNCLSFNPYSEYILATGSA  688 (860)
Q Consensus       626 ~v~~sp~~~~~lasgs----------~DG~I~IWd~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~g~~llasgs~  688 (860)
                      .+.++| +++.++++.          .++.|.+||..+.+.   +..+...       ......+.|+|+|++++++...
T Consensus        70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~---~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~  145 (373)
T 2mad_H           70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP---IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA  145 (373)
T ss_pred             CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcE---EEEEECCCccccccCCCccceEECCCCCEEEEEecC
Confidence            999999 566555554          367899999987433   2222111       1234589999999986555433


Q ss_pred             -CCc
Q psy4578         689 -DKT  691 (860)
Q Consensus       689 -Dg~  691 (860)
                       ++.
T Consensus       146 ~~~~  149 (373)
T 2mad_H          146 AGPA  149 (373)
T ss_pred             CCCe
Confidence             455

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.44  E-value=4.1e-06  Score=89.81  Aligned_cols=211  Identities=12%  Similarity=0.033  Sum_probs=119.9

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC-CCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH-TAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h-~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      .....+.++++++ +++++++...++.|.+|+.. +..........+. ...+.+++++++|. ++++-..-|+...+..
T Consensus        83 ~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~  159 (305)
T 3dr2_A           83 DATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQG  159 (305)
T ss_dssp             ESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGS
T ss_pred             CCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccc
Confidence            3445688999998 67776666566789999975 3221111111111 23467899999998 4665211111000000


Q ss_pred             c--ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC-----CCcEEEEeCCCCcee-eEEe-
Q psy4578         698 E--EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA-----DKTVALWDLRNLKLK-LHSF-  768 (860)
Q Consensus       698 ~--~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~-----Dg~I~IWDl~~~~~~-~~~~-  768 (860)
                      .  ......+.|..||..+++.   . .+. .......++|+|++..++++.+.     ++.|.+||+...... ...+ 
T Consensus       160 ~~~~~~~~~~~v~~~d~~~g~~---~-~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~  234 (305)
T 3dr2_A          160 CPADPELAHHSVYRLPPDGSPL---Q-RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA  234 (305)
T ss_dssp             CCCCCSSSCEEEEEECSSSCCC---E-EEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE
T ss_pred             cccccccCCCeEEEEcCCCCcE---E-EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE
Confidence            0  0011124477777765532   1 122 33456889999999964444433     278999998764310 1111 


Q ss_pred             ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578         769 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       769 ~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                      ....+....++++++|.  |..++.+ .|.+|+... +              .+....... .+.+++|+++++.|++ +
T Consensus       235 ~~~~~~pdgi~~d~~G~--lwv~~~~-gv~~~~~~g-~--------------~~~~~~~~~-~~~~~~f~~d~~~L~i-t  294 (305)
T 3dr2_A          235 SVPDGLPDGFCVDRGGW--LWSSSGT-GVCVFDSDG-Q--------------LLGHIPTPG-TASNCTFDQAQQRLFI-T  294 (305)
T ss_dssp             CCSSSCCCSEEECTTSC--EEECCSS-EEEEECTTS-C--------------EEEEEECSS-CCCEEEECTTSCEEEE-E
T ss_pred             ECCCCCCCeEEECCCCC--EEEecCC-cEEEECCCC-C--------------EEEEEECCC-ceeEEEEeCCCCEEEE-E
Confidence            11234456789999997  3444444 499998743 1              122222222 5889999999987554 4


Q ss_pred             eCCCeEeec
Q psy4578         849 SEDNIMQKP  857 (860)
Q Consensus       849 s~Dg~IrI~  857 (860)
                      +.++..+++
T Consensus       295 ~~~~l~~~~  303 (305)
T 3dr2_A          295 GGPCLWMLP  303 (305)
T ss_dssp             ETTEEEEEE
T ss_pred             cCCeEEEEE
Confidence            557877764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.33  E-value=9.2e-06  Score=87.03  Aligned_cols=196  Identities=12%  Similarity=0.054  Sum_probs=117.8

Q ss_pred             cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      +.....+..|+|+++.+++++..++.|..|+. ++.    ...+..+...+.+++++++|+ ++++...++.        
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~----~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~--------  108 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT----VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRA--------  108 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC----EEEEEESCSCEEEEEECTTSC-EEEEETTTTE--------
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC----EEEEeCCCCccceeeECCCCC-EEEEECCCCE--------
Confidence            34445688999955557888888999999987 332    233444567789999999998 5555544455        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCee-eecC-CCCCeEEEEEcCCCCcEEEE----eeC-------------CCcEEEEeCCC
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSH-TVDA-HTAEVNCLSFNPYSEYILAT----GSA-------------DKTVALWDLRN  760 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~-~~~~-h~~~I~sl~~sp~g~~llas----gs~-------------Dg~I~IWDl~~  760 (860)
                             |..|+.. +.. ..+. ...+ ....+.+++++|+|. +++|    |..             .+.|..||..+
T Consensus       109 -------v~~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~  178 (305)
T 3dr2_A          109 -------ITRSDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG  178 (305)
T ss_dssp             -------EEEECTT-SCE-EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred             -------EEEECCC-CCE-EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence                   7777764 211 1111 1111 113467899999998 5665    432             25678888766


Q ss_pred             CceeeEEeccCCCceEEEEEcCCCCCEEEEEECC------CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEE
Q psy4578         761 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTD------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  834 (860)
Q Consensus       761 ~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D------g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~  834 (860)
                      +....  +. .....+.++|+|+++.+ +.+...      +.|.+|++.... ...        .....  ....+...+
T Consensus       179 g~~~~--~~-~~~~p~gl~~spdg~~l-yv~~~~~~~~~~~~i~~~~~~~~~-l~~--------~~~~~--~~~~~~pdg  243 (305)
T 3dr2_A          179 SPLQR--MA-DLDHPNGLAFSPDEQTL-YVSQTPEQGHGSVEITAFAWRDGA-LHD--------RRHFA--SVPDGLPDG  243 (305)
T ss_dssp             CCCEE--EE-EESSEEEEEECTTSSEE-EEEECCC---CCCEEEEEEEETTE-EEE--------EEEEE--CCSSSCCCS
T ss_pred             CcEEE--Ee-cCCCCcceEEcCCCCEE-EEEecCCcCCCCCEEEEEEecCCC-ccC--------CeEEE--ECCCCCCCe
Confidence            65422  22 33467889999999864 444443      789999987532 100        00011  111234556


Q ss_pred             EEEccCCCeEEEEEeCCCeEee
Q psy4578         835 FSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       835 i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++++++|+ +.++. .+++.++
T Consensus       244 i~~d~~G~-lwv~~-~~gv~~~  263 (305)
T 3dr2_A          244 FCVDRGGW-LWSSS-GTGVCVF  263 (305)
T ss_dssp             EEECTTSC-EEECC-SSEEEEE
T ss_pred             EEECCCCC-EEEec-CCcEEEE
Confidence            78888888 34333 5554443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.30  E-value=0.00027  Score=73.80  Aligned_cols=161  Identities=6%  Similarity=0.043  Sum_probs=108.5

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      ..+.+++|++.++.++++-..++.|..++......   .............+++++++..++++....+.          
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~----------  102 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDR----------  102 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---EEEECTTCCCEEEEEEETTTTEEEEEETTTTE----------
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---EEEEECCCCCccEEEEEecCCeEEEEECCCCE----------
Confidence            45779999986677777777788999999876321   22222223567899999987777777666666          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC--CCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA--DKTVALWDLRNLKLKLHSFESHKDEIFQVQ  779 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~--Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~  779 (860)
                           |.+++.....   ..............++++|++.+++++...  .+.|..++...... .............++
T Consensus       103 -----I~~~~~~g~~---~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~~~~~~P~gia  173 (267)
T 1npe_A          103 -----IEVAKMDGTQ---RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLT  173 (267)
T ss_dssp             -----EEEEETTSCS---CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEE
T ss_pred             -----EEEEEcCCCC---EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEEECCCCCCcEEE
Confidence                 8888876431   111122222457899999976665655543  47888888875442 111222335678999


Q ss_pred             EcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         780 WSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       780 fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      +++++..++++....+.|.++|...
T Consensus       174 ~d~~~~~lyv~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          174 FDAFSSQLCWVDAGTHRAECLNPAQ  198 (267)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTE
T ss_pred             EcCCCCEEEEEECCCCEEEEEecCC
Confidence            9998887677777788999999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.29  E-value=1.3e-05  Score=87.67  Aligned_cols=196  Identities=13%  Similarity=0.128  Sum_probs=117.8

Q ss_pred             cccceeeeEeeccCCcEEEEEeC-----CCcEEEEEcCCCCcccCeeecc------CCCCCeeEEEEccCCCeEEEEEe-
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVAD-----DQKLMIWDTRSHNVSKPSHTVD------AHTAEVNCLSFNPYSEYILATGS-  687 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~-----DG~I~IWd~~~~~~~~~~~~~~------~h~~~V~~l~~sp~g~~llasgs-  687 (860)
                      +...+.++++++ +++++++-..     ++.|.+||..+++.   +..+.      .+...+..+++++++..++++.. 
T Consensus        65 ~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~---~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~  140 (343)
T 2qe8_A           65 TFDTVLGIKSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQL---SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA  140 (343)
T ss_dssp             CCSCEEEEEECS-SSEEEEEECHHHHTSCCEEEEEETTTTEE---EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred             ceeEeeEEEEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeE---EEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence            456799999998 5666665443     57899999987532   22221      12345689999987666666655 


Q ss_pred             --CCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCC-----------------------------CCCeEEEEE
Q psy4578         688 --ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAH-----------------------------TAEVNCLSF  736 (860)
Q Consensus       688 --~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h-----------------------------~~~I~sl~~  736 (860)
                        .++.               |.+||..++..   ...+.+|                             ...+..++|
T Consensus       141 ~~~~~~---------------i~v~d~~~g~~---~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~  202 (343)
T 2qe8_A          141 PDDKAA---------------LIRVDLQTGLA---ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL  202 (343)
T ss_dssp             SGGGCE---------------EEEEETTTCCE---EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE
T ss_pred             cCCCCe---------------EEEEECCCCCE---EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe
Confidence              4555               67777654421   1111110                             124688999


Q ss_pred             cCCCCcEEEEeeCCC-cEEEEeCC---CCce----e--eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         737 NPYSEYILATGSADK-TVALWDLR---NLKL----K--LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       737 sp~g~~llasgs~Dg-~I~IWDl~---~~~~----~--~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      +|+|+. ++.+..++ .+..++..   ....    .  .....++.+....++++++|. ++++...++.|.+||..++.
T Consensus       203 s~dg~~-ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          203 DAENEW-LYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             CTTSCE-EEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTTE
T ss_pred             ccCCCE-EEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCCC
Confidence            999986 55555444 55555432   1110    0  001123444567799999986 67777788999999983321


Q ss_pred             cccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         807 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       807 ~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                      .            ..+.. ..+...+.+++|+++|. ++++.+..+.
T Consensus       281 ~------------~~~~~-~~~~~~p~~va~~~~g~-l~v~~~~~~~  313 (343)
T 2qe8_A          281 Y------------KLLVT-DEKLSWTDSFNFGSDGY-LYFDCNQLHH  313 (343)
T ss_dssp             E------------EEEEE-CGGGSCEEEEEECTTSC-EEEEECCGGG
T ss_pred             E------------EEEEE-CCceecCCeeEECCCCc-EEEEeCcccc
Confidence            1            11111 12345689999999987 5666654443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.19  E-value=2.9e-05  Score=86.81  Aligned_cols=201  Identities=15%  Similarity=0.135  Sum_probs=122.2

Q ss_pred             eeeeEeeccCCcEEEEEeCC------CcEEEEEcCCCCcccCeeeccC--C-CCCeeEEEEccCCCeEEEEEeC------
Q psy4578         624 LIDVAWHLLHESLFGSVADD------QKLMIWDTRSHNVSKPSHTVDA--H-TAEVNCLSFNPYSEYILATGSA------  688 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~D------G~I~IWd~~~~~~~~~~~~~~~--h-~~~V~~l~~sp~g~~llasgs~------  688 (860)
                      -..+...| ++ +++++..+      |.|.++|..+.+   .+.++..  . ...-..+.|+|+++. +++...      
T Consensus       140 Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~---v~~~~~~~~~~~~~~Yd~~~~p~~~~-mvsS~wg~p~~~  213 (462)
T 2ece_A          140 LHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFE---PLGKWEIDRGDQYLAYDFWWNLPNEV-LVSSEWAVPNTI  213 (462)
T ss_dssp             EEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCC---EEEECCSBCTTCCCCCCEEEETTTTE-EEECBCCCHHHH
T ss_pred             ccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCe---EEEEEccCCCCccccceEEECCCCCE-EEEccCcCcccc
Confidence            44566777 55 77776666      789999998854   3444431  1 123456889999995 555531      


Q ss_pred             -CCceeeecccc-cccCCCcEEEEeCCCCCCCCCeeeecCC--CCCeEEEEE--cCCCCcEEEEee-----CCCcEEEEe
Q psy4578         689 -DKTQFEVEEEE-EENYDQKLMIWDTRSHNVSKPSHTVDAH--TAEVNCLSF--NPYSEYILATGS-----ADKTVALWD  757 (860)
Q Consensus       689 -Dg~i~~~~~~~-~~~~dg~I~iwDl~~~~~~~~~~~~~~h--~~~I~sl~~--sp~g~~llasgs-----~Dg~I~IWD  757 (860)
                       .|.    .... .+..+..|.+||+.++   +.+.++...  ......+.|  +|++++.++++.     .+++|.+|.
T Consensus       214 ~~g~----~~~~~~~~~~d~V~v~D~~~~---k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~  286 (462)
T 2ece_A          214 EDGL----KLEHLKDRYGNRIHFWDLRKR---KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWF  286 (462)
T ss_dssp             TTCC----CTTTHHHHSCCEEEEEETTTT---EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEE
T ss_pred             cccc----chhhhhhccCCEEEEEECCCC---cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEE
Confidence             110    0000 0123456999999875   344444432  123445655  999998777777     788998877


Q ss_pred             CCCCceeeEE---eccC----------------CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCC
Q psy4578         758 LRNLKLKLHS---FESH----------------KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP  818 (860)
Q Consensus       758 l~~~~~~~~~---~~~h----------------~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~  818 (860)
                      ...+......   ....                ......+.+++||+++.++.-..+.|.+||+......          
T Consensus       287 ~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~----------  356 (462)
T 2ece_A          287 YEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKP----------  356 (462)
T ss_dssp             EETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSC----------
T ss_pred             ecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCc----------
Confidence            6554321111   1110                2457789999999987777778899999998642211          


Q ss_pred             CccEEEec-C-------c------cCceEEEEEccCCCeEEEEE
Q psy4578         819 PELLFIHG-G-------H------TAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       819 ~~~i~~~~-~-------h------~~~I~~i~~spdg~~Llasg  848 (860)
                       .++.... +       |      .+.-..++++|||++|+++.
T Consensus       357 -~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          357 -VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             -EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             -EEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence             1111111 0       0      12357899999999988887

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.18  E-value=0.00035  Score=72.91  Aligned_cols=186  Identities=6%  Similarity=0.045  Sum_probs=115.7

Q ss_pred             EEEEEeCCCcEEEEEcCCCCcccC--eeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578         636 LFGSVADDQKLMIWDTRSHNVSKP--SHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR  713 (860)
Q Consensus       636 ~lasgs~DG~I~IWd~~~~~~~~~--~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~  713 (860)
                      +|+.+.. +.|+.+++........  ...+......+.+++|++++..++++....+.               |..++..
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~---------------I~~~~~~   66 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPS---------------IGRASLH   66 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTE---------------EEEEESS
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCE---------------EEEEecC
Confidence            3444433 4788888875432110  11111112457899999988877777766666               8888887


Q ss_pred             CCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC
Q psy4578         714 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT  793 (860)
Q Consensus       714 ~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~  793 (860)
                      ...   .............+++++|++..++++....+.|.++|...... .............++++|++..++++...
T Consensus        67 g~~---~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~  142 (267)
T 1npe_A           67 GGE---PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWN  142 (267)
T ss_dssp             SCC---CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECC
T ss_pred             CCC---cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECC
Confidence            542   22222222356789999998776777777788999999876543 22222222567899999976665555543


Q ss_pred             --CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         794 --DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       794 --Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                        .+.|..+++.....            ..+  ..........+++++++.+|+++....+.|.
T Consensus       143 ~~~~~I~~~~~dg~~~------------~~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~  192 (267)
T 1npe_A          143 RDNPKIETSHMDGTNR------------RIL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (267)
T ss_dssp             SSSCEEEEEETTSCCC------------EEE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCcEEEEEecCCCCc------------EEE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence              46888888754211            111  1112245788999998887888877776665

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.16  E-value=3.6e-05  Score=84.05  Aligned_cols=211  Identities=12%  Similarity=0.076  Sum_probs=117.5

Q ss_pred             cceeeeEeeccCCcEEEEEe--CCCcEEEEEcCCCCcccCe----eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         622 RLLIDVAWHLLHESLFGSVA--DDQKLMIWDTRSHNVSKPS----HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs--~DG~I~IWd~~~~~~~~~~----~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      ..+..+++++ +++++++..  .+|.++||.+.++.. ...    .....+-..+.+++++++++ ++++....      
T Consensus        17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~------   87 (343)
T 2qe8_A           17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGN------   87 (343)
T ss_dssp             SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHH------
T ss_pred             CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCC------
Confidence            4678999998 678888764  234366666653311 100    11123456899999999886 55554321      


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeec------CCCCCeEEEEEcCCCCcEEEEee---CCCcEEEEeCCCCceeeE
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVD------AHTAEVNCLSFNPYSEYILATGS---ADKTVALWDLRNLKLKLH  766 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~------~h~~~I~sl~~sp~g~~llasgs---~Dg~I~IWDl~~~~~~~~  766 (860)
                          ....++.|.+||+.+++   .+..+.      .+...+..++++|++..++++.+   .++.|.+||..++.. ..
T Consensus        88 ----~~~~~~~i~~~d~~tg~---~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r  159 (343)
T 2qe8_A           88 ----QSKSVPKLVAWDTLNNQ---LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-AR  159 (343)
T ss_dssp             ----HHTSCCEEEEEETTTTE---EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EE
T ss_pred             ----CcCCCCeEEEEECCCCe---EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EE
Confidence                00011238888887653   222222      12345689999987666667766   688999999987654 33


Q ss_pred             EeccC-----------------------------CCceEEEEEcCCCCCEEEEEECCC-cEEEEECCCCCcccccccccC
Q psy4578         767 SFESH-----------------------------KDEIFQVQWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAED  816 (860)
Q Consensus       767 ~~~~h-----------------------------~~~V~~l~fsp~g~~lL~tgs~Dg-~I~iWdl~~~~~~~~~~~~~~  816 (860)
                      .+.+|                             ...+..++|+|+|+. |+.+..++ .+..++........ ..... 
T Consensus       160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~-ly~~~~~~~~l~~~~~~~~~~~~-~~~~~-  236 (343)
T 2qe8_A          160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW-LYLSPMHSTSMYRIKSADLSNLQ-LTDAE-  236 (343)
T ss_dssp             ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE-EEEEESSCSEEEEEEHHHHTCTT-CCHHH-
T ss_pred             EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCE-EEEEeCCCCeEEEEEHHHhcCCC-CChhh-
Confidence            33221                             123688999999986 55555444 55555532111000 00000 


Q ss_pred             CCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         817 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       817 ~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                       ....+. ..++.+....++++++|. ++++...++.|.
T Consensus       237 -~~~~~~-~~g~~g~pdgia~d~~G~-l~va~~~~~~V~  272 (343)
T 2qe8_A          237 -LGSKIE-RYSEKPICDGISIDKDHN-IYVGDLAHSAIG  272 (343)
T ss_dssp             -HHTTCE-EEEECCSCSCEEECTTCC-EEEEEGGGTEEE
T ss_pred             -hhcceE-ecccCCCCceEEECCCCC-EEEEccCCCeEE
Confidence             000000 112333456788888887 566666655554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.09  E-value=3.7e-05  Score=85.91  Aligned_cols=209  Identities=13%  Similarity=0.137  Sum_probs=124.8

Q ss_pred             ccCCcEEEEEeCCCcEEEEEcCCCC-cccCeeecc-------CCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578         631 LLHESLFGSVADDQKLMIWDTRSHN-VSKPSHTVD-------AHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN  702 (860)
Q Consensus       631 p~~~~~lasgs~DG~I~IWd~~~~~-~~~~~~~~~-------~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~  702 (860)
                      ++...++++|..++.|.|+|+.+.. ..+...++.       ........+...|+|  +++++..+.         .+.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~---------~g~  161 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNE---------EGE  161 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEET---------TSC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCc---------CCC
Confidence            5445567778888999999997532 123333331       011245667888988  455554331         122


Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecC--CC-CCeEEEEEcCCCCcEEEEee-------------------CCCcEEEEeCCC
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDA--HT-AEVNCLSFNPYSEYILATGS-------------------ADKTVALWDLRN  760 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~--h~-~~I~sl~~sp~g~~llasgs-------------------~Dg~I~IWDl~~  760 (860)
                      ..|.+.++|..+.   +.+.....  .. ..-..+.|+|+++. +++..                   .+.+|.+||+.+
T Consensus       162 ~~g~v~vlD~~T~---~v~~~~~~~~~~~~~~Yd~~~~p~~~~-mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~  237 (462)
T 2ece_A          162 GPGGILMLDHYSF---EPLGKWEIDRGDQYLAYDFWWNLPNEV-LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK  237 (462)
T ss_dssp             SCCEEEEECTTTC---CEEEECCSBCTTCCCCCCEEEETTTTE-EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred             CCCeEEEEECCCC---eEEEEEccCCCCccccceEEECCCCCE-EEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence            4456999999886   33334331  11 22346889999994 66663                   368999999998


Q ss_pred             CceeeEEeccC--CCceEEEEE--cCCCCCEEEEEE-----CCCcEEEEECCCCCcccccccccCCCCccEEEe------
Q psy4578         761 LKLKLHSFESH--KDEIFQVQW--SPHNETILASSG-----TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH------  825 (860)
Q Consensus       761 ~~~~~~~~~~h--~~~V~~l~f--sp~g~~lL~tgs-----~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~------  825 (860)
                      .+. +..+...  ......+.|  +|+|++.++++-     .+++|.+|....+. ......-.-........+      
T Consensus       238 ~k~-~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~  315 (462)
T 2ece_A          238 RKR-IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKP  315 (462)
T ss_dssp             TEE-EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGG
T ss_pred             CcE-eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccc
Confidence            764 5555432  123455655  999998777777     78899888765421 100000000000000000      


Q ss_pred             -cCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         826 -GGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       826 -~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                       .+-......|.+|+||++|.++.-..+.|.+
T Consensus       316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vav  347 (462)
T 2ece_A          316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQ  347 (462)
T ss_dssp             GTEECCCCCCEEECTTSCEEEEEETTTTEEEE
T ss_pred             cccCCCceeEEEECCCCCEEEEEeCCCCEEEE
Confidence             0012457889999999999999888888875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.07  E-value=0.00021  Score=74.90  Aligned_cols=202  Identities=8%  Similarity=0.035  Sum_probs=123.0

Q ss_pred             eeeeEeeccCCcEEEEEeC--CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         624 LIDVAWHLLHESLFGSVAD--DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~--DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      ...+.|++ ++.++++.+.  ++.|+++|..+++....+. +..+ .....+++.  +..++++.-.++.          
T Consensus        23 ~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~-~fgeGi~~~--g~~lyv~t~~~~~----------   87 (266)
T 2iwa_A           23 TQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHK-MDDS-YFGEGLTLL--NEKLYQVVWLKNI----------   87 (266)
T ss_dssp             EEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTT-CCEEEEEEE--TTEEEEEETTCSE----------
T ss_pred             cccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCC-cceEEEEEe--CCEEEEEEecCCE----------
Confidence            46899997 4665555543  5799999999865422221 1122 122345554  5566666666666          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc--C---CCceE
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--H---KDEIF  776 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~--h---~~~V~  776 (860)
                           +.++|..+.   +.+.++......  ...++++|..++++ ..++.|.++|..+.+. .....-  +   -..++
T Consensus        88 -----v~viD~~t~---~v~~~i~~g~~~--g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v-~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           88 -----GFIYDRRTL---SNIKNFTHQMKD--GWGLATDGKILYGS-DGTSILYEIDPHTFKL-IKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             -----EEEEETTTT---EEEEEEECCSSS--CCEEEECSSSEEEE-CSSSEEEEECTTTCCE-EEEEECEETTEECCCEE
T ss_pred             -----EEEEECCCC---cEEEEEECCCCC--eEEEEECCCEEEEE-CCCCeEEEEECCCCcE-EEEEEECCCCcccccce
Confidence                 999999876   444454322111  23355678875655 4688999999998776 444332  1   12467


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      .+.|. +|. +++....++.|.+.|..+++....+....... ........-......|+|+|+++.+++++...+.+.
T Consensus       156 ele~~-dg~-lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~-~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~  231 (266)
T 2iwa_A          156 ELEYI-NGE-VWANIWQTDCIARISAKDGTLLGWILLPNLRK-KLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF  231 (266)
T ss_dssp             EEEEE-TTE-EEEEETTSSEEEEEETTTCCEEEEEECHHHHH-HHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             eEEEE-CCE-EEEecCCCCeEEEEECCCCcEEEEEECCCccc-ccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence            88888 664 56666578999999999876544432110000 000000001135689999999999999998777664

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.05  E-value=2.5e-05  Score=86.29  Aligned_cols=222  Identities=7%  Similarity=-0.066  Sum_probs=113.5

Q ss_pred             eccchhhhhhhhh-cccceeeeEeeccCCcEEEEEe---------CCCcEEEEEcCCCCcccCeeeccCC-------CCC
Q psy4578         607 ENKTRAQICQLLD-KLRLLIDVAWHLLHESLFGSVA---------DDQKLMIWDTRSHNVSKPSHTVDAH-------TAE  669 (860)
Q Consensus       607 ~n~~~~~l~~l~~-~~~~V~~v~~sp~~~~~lasgs---------~DG~I~IWd~~~~~~~~~~~~~~~h-------~~~  669 (860)
                      .+....++...+. ...+  .+.++|++..++++.+         .++.|.+||..+++.   +.++...       ...
T Consensus        51 ID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v---v~~I~v~~~~~~~~g~~  125 (368)
T 1mda_H           51 SCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---IADIELPDAPRFSVGPR  125 (368)
T ss_dssp             EETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---EEEEEETTSCSCCBSCC
T ss_pred             EECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE---EEEEECCCccccccCCC
Confidence            3444444444433 3344  8999995445444432         468899999998543   4443221       124


Q ss_pred             eeEEEEccCCCeEEEEEeC-CCceee--eccccc---------------------ccCCCcEEEEeCCCCCCCCCeeeec
Q psy4578         670 VNCLSFNPYSEYILATGSA-DKTQFE--VEEEEE---------------------ENYDQKLMIWDTRSHNVSKPSHTVD  725 (860)
Q Consensus       670 V~~l~~sp~g~~llasgs~-Dg~i~~--~~~~~~---------------------~~~dg~I~iwDl~~~~~~~~~~~~~  725 (860)
                      ...++++|||++++++... +..+.+  ++....                     ...+|.+.+.|+.+..  ..-....
T Consensus       126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~--~~~~~v~  203 (368)
T 1mda_H          126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP--AAAGIVG  203 (368)
T ss_dssp             TTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSC--CCCEECC
T ss_pred             cceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcccc--ccCCeEE
Confidence            5689999999985555433 344444  333220                     0011111111111100  0000000


Q ss_pred             --------CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee-eEEecc-------C---CCceEEEEEcCCCCC
Q psy4578         726 --------AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-LHSFES-------H---KDEIFQVQWSPHNET  786 (860)
Q Consensus       726 --------~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~-~~~~~~-------h---~~~V~~l~fsp~g~~  786 (860)
                              -...+.   . ++++.. ++..+. +.+.+.|..+.... +..+.-       +   ......++++|+++.
T Consensus       204 ~~~t~~i~vg~~P~---~-~~~~~~-~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~  277 (368)
T 1mda_H          204 AQCTGAQNCSSQAA---Q-ANYPGM-LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG  277 (368)
T ss_dssp             CCSCTTSCBCSCCE---E-ETTTTE-EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred             EEeeeeeeCCCCcc---c-cccCCE-EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence                    000011   2 344443 233333 77888887643211 111110       0   011112689999988


Q ss_pred             EEEEEE-C-------CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe-CCCeEee
Q psy4578         787 ILASSG-T-------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS-EDNIMQK  856 (860)
Q Consensus       787 lL~tgs-~-------Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs-~Dg~IrI  856 (860)
                      ++++.. .       ++.+.++|+.+.+....+.              . .....+++|+|||+++++++. .++.|.|
T Consensus       278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~--------------v-g~~p~gi~~s~Dg~~l~va~~~~~~~VsV  341 (368)
T 1mda_H          278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--------------N-GHDSDAIIAAQDGASDNYANSAGTEVLDI  341 (368)
T ss_dssp             EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE--------------E-EEEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred             EEEEeccccCcccccCCCEEEEECCCCeEEEEEE--------------C-CCCcceEEECCCCCEEEEEccCCCCeEEE
Confidence            665544 2       2456699999865443321              1 124788999999998888888 5777764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.01  E-value=0.0001  Score=82.89  Aligned_cols=218  Identities=9%  Similarity=0.014  Sum_probs=113.4

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEe---------CCCcEEEEEcCCCCcccCeeec-cC---CCCCe
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVA---------DDQKLMIWDTRSHNVSKPSHTV-DA---HTAEV  670 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs---------~DG~I~IWd~~~~~~~~~~~~~-~~---h~~~V  670 (860)
                      +...+....++...+.-...- .+.++|++..++++..         .++.|.++|..+.+....+..- ..   .....
T Consensus       101 VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P  179 (426)
T 3c75_H          101 QFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQ  179 (426)
T ss_dssp             EEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG
T ss_pred             EEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCc
Confidence            334444444444444333233 8999995555555432         4678999999985432222210 00   12345


Q ss_pred             eEEEEccCCCeEEEEEeC-CCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCC----------------------
Q psy4578         671 NCLSFNPYSEYILATGSA-DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAH----------------------  727 (860)
Q Consensus       671 ~~l~~sp~g~~llasgs~-Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h----------------------  727 (860)
                      ..+.++|||++++++... ++.               |.+.|+.+.+   .+..+.-.                      
T Consensus       180 ~~~~~spDGk~lyV~n~~~~~~---------------VsVID~~t~k---vv~~I~v~g~~~~~p~g~~~~v~~~~dG~~  241 (426)
T 3c75_H          180 WMNALTPDNKNLLFYQFSPAPA---------------VGVVDLEGKT---FDRMLDVPDCYHIFPASPTVFYMNCRDGSL  241 (426)
T ss_dssp             GGSEECTTSSEEEEEECSSSCE---------------EEEEETTTTE---EEEEEECCSEEEEEEEETTEEEEEETTSSE
T ss_pred             ceEEEcCCCCEEEEEecCCCCe---------------EEEEECCCCe---EEEEEEcCCceeeccCCCcEEEEEcCCCCE
Confidence            678999999986665433 566               5555555432   11111100                      


Q ss_pred             ------CCCe----------------EEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceee-EEecc----------CCCc
Q psy4578         728 ------TAEV----------------NCLSFNPYSEYILATGSADKTVALWDLRNLKLKL-HSFES----------HKDE  774 (860)
Q Consensus       728 ------~~~I----------------~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~-~~~~~----------h~~~  774 (860)
                            .+.+                ..+.+.+++..++++ +..|.+.+.|..+....+ ..+.-          ....
T Consensus       242 ~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~-s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g  320 (426)
T 3c75_H          242 ARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWP-TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGG  320 (426)
T ss_dssp             EEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEE-BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECS
T ss_pred             EEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEE-eCCCcEEEEeccCCceEEeeeeeeccccccccccccCC
Confidence                  0000                012334554432222 345566666664433110 00000          0011


Q ss_pred             eEEEEEcCCCCCEEEEEEC---------CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC-eE
Q psy4578         775 IFQVQWSPHNETILASSGT---------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WV  844 (860)
Q Consensus       775 V~~l~fsp~g~~lL~tgs~---------Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~-~L  844 (860)
                      ...++++|++..++++...         ++.|.++|..+.+....+              .. .....+++|+|||+ .+
T Consensus       321 ~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I--------------~v-g~~P~gia~spDg~~~l  385 (426)
T 3c75_H          321 WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI--------------EL-GHEIDSINVSQDAEPLL  385 (426)
T ss_dssp             SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE--------------EE-EEEECEEEECCSSSCEE
T ss_pred             ceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEE--------------EC-CCCcCeEEEccCCCEEE
Confidence            1226788888876655431         357999998885543222              11 12478899999999 66


Q ss_pred             EEEEeCCCeEee
Q psy4578         845 ICSVSEDNIMQK  856 (860)
Q Consensus       845 lasgs~Dg~IrI  856 (860)
                      +++...++.|.|
T Consensus       386 yv~n~~s~~VsV  397 (426)
T 3c75_H          386 YALSAGTQTLHI  397 (426)
T ss_dssp             EEEETTTTEEEE
T ss_pred             EEEcCCCCeEEE
Confidence            666656777654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.97  E-value=0.002  Score=70.41  Aligned_cols=164  Identities=10%  Similarity=0.039  Sum_probs=110.9

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      ........++|++.++.++++-...+.|..++......   .............+++.+.+..++.+-...+.       
T Consensus        70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~-------  139 (349)
T 3v64_C           70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSR-------  139 (349)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSCCCEEEEETTTTEEEEEETTTTE-------
T ss_pred             cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc---eEEEeCCCCCccEEEEecCCCeEEEEcCCCCe-------
Confidence            34456789999986777777777788999999876422   11222223455788998877777777666665       


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-CcEEEEeCCCCceeeEEeccCCCceEE
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-KTVALWDLRNLKLKLHSFESHKDEIFQ  777 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g~I~IWDl~~~~~~~~~~~~h~~~V~~  777 (860)
                              |.+.++...   ...............++++|.+.+++++-... +.|..+++..... .......-...+.
T Consensus       140 --------I~~~~~dG~---~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnG  207 (349)
T 3v64_C          140 --------IEVANLDGA---HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNG  207 (349)
T ss_dssp             --------EEEEETTSC---SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEE
T ss_pred             --------EEEEcCCCC---ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcce
Confidence                    888887653   12222223345678999999777667776666 8899999876543 1112223446789


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         778 VQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       778 l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ++|+|++..+.++-...+.|..+|+..
T Consensus       208 la~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          208 LTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            999998877676666778999999864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.97  E-value=0.0012  Score=73.26  Aligned_cols=166  Identities=11%  Similarity=0.055  Sum_probs=111.0

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      +.........++|++.++.++++-...+.|..++......   ...+.........+++.+.+..++++-...+.     
T Consensus       111 ~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~-----  182 (386)
T 3v65_B          111 LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSR-----  182 (386)
T ss_dssp             EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE---EEEECSSCSCCCCEEEETTTTEEEEEETTTTE-----
T ss_pred             EecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc---EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCe-----
Confidence            3344556889999986777777777788999999876421   11122222345678888877777777665665     


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-CcEEEEeCCCCceeeEEeccCCCce
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-KTVALWDLRNLKLKLHSFESHKDEI  775 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g~I~IWDl~~~~~~~~~~~~h~~~V  775 (860)
                                |.+.++...   .....+.........++++|.+.+++++-... +.|..+++..... .......-...
T Consensus       183 ----------I~~~~~dg~---~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~P  248 (386)
T 3v65_B          183 ----------IEVANLDGA---HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWP  248 (386)
T ss_dssp             ----------EEECBTTSC---SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCE
T ss_pred             ----------EEEEeCCCC---ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCe
Confidence                      777776543   12222223335678999999887767666555 7899999876543 22223334567


Q ss_pred             EEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         776 FQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       776 ~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      +.++|+|++..++++-+..+.|..+|+..
T Consensus       249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          249 NGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             eeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            89999988877677766778899999764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.94  E-value=1.5e-05  Score=88.11  Aligned_cols=158  Identities=13%  Similarity=0.077  Sum_probs=85.2

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc------------
Q psy4578         633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE------------  700 (860)
Q Consensus       633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~------------  700 (860)
                      .+..+++++.||.|..||..+++.   +..+..  +.+.+..+..++. ++++++.||.++.|+..+.            
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~---~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~   81 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSI---KWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE   81 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCE---EEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE---EEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence            467788899999999999998643   333333  3444444555565 4666678888777654221            


Q ss_pred             ----------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee
Q psy4578         701 ----------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK  764 (860)
Q Consensus       701 ----------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~  764 (860)
                                      +..++.+..||..+++   .+..+..+.    ...++|++.. +++|+.|+.|+.||.++++. 
T Consensus        82 ~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~---~~w~~~~~~----~~~~~p~~~~-v~~~~~dg~v~a~d~~tG~~-  152 (369)
T 2hz6_A           82 LVQASPCRSSDGILYMGKKQDIWYVIDLLTGE---KQQTLSSAF----ADSLSPSTSL-LYLGRTEYTITMYDTKTREL-  152 (369)
T ss_dssp             HHTTCSCC-----CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSC-
T ss_pred             ccccCceEecCCEEEEEeCCCEEEEEECCCCc---EEEEecCCC----cccccccCCE-EEEEecCCEEEEEECCCCCE-
Confidence                            1235678899988873   333333332    2345666764 77888999999999998875 


Q ss_pred             eEEeccCCCceEEEEEcCCC---CCEEEEEECCCcEEEEECCCCCcc
Q psy4578         765 LHSFESHKDEIFQVQWSPHN---ETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       765 ~~~~~~h~~~V~~l~fsp~g---~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      +..+..+.  ....++++++   .. +++++.||.++.||..+++..
T Consensus       153 ~W~~~~~~--~~~~~~~~~~~~~~~-v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          153 RWNATYFD--YAASLPEDDVDYKMS-HFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             CCEEEEEE--ECCBCCCCCTTCCCC-EEEEETSCEEEEECTTTCCEE
T ss_pred             EEeEeccc--ccCccccCCccccce-EEEECCCCEEEEEECCCCcEE
Confidence            32222111  1222333331   33 667889999999999886543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.92  E-value=0.00048  Score=71.55  Aligned_cols=193  Identities=10%  Similarity=0.132  Sum_probs=117.8

Q ss_pred             eeeeEeeccCCcEEEEEeCCC--cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         624 LIDVAWHLLHESLFGSVADDQ--KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG--~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      ...+.|+  ++.++.+++.+|  .|+++|+.+++..   ..... ..........++++.++.+.-.++.          
T Consensus        45 tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~---~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~----------  108 (262)
T 3nol_A           45 TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTL---QQIEL-GKRYFGEGISDWKDKIVGLTWKNGL----------  108 (262)
T ss_dssp             EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEE---EEEEC-CTTCCEEEEEEETTEEEEEESSSSE----------
T ss_pred             cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEE---EEEec-CCccceeEEEEeCCEEEEEEeeCCE----------
Confidence            4678887  467777777776  8999999996543   33222 2223222223346666666656666          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc--CC---CceE
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--HK---DEIF  776 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~--h~---~~V~  776 (860)
                           +.+||..+.   +.+.++.... .-..+  ++++..++++ ..++.|.++|..+.+. ......  ..   ..++
T Consensus       109 -----v~v~D~~t~---~~~~ti~~~~-eG~gl--t~dg~~L~~S-dGs~~i~~iDp~T~~v-~~~I~V~~~g~~~~~lN  175 (262)
T 3nol_A          109 -----GFVWNIRNL---RQVRSFNYDG-EGWGL--THNDQYLIMS-DGTPVLRFLDPESLTP-VRTITVTAHGEELPELN  175 (262)
T ss_dssp             -----EEEEETTTC---CEEEEEECSS-CCCCE--EECSSCEEEC-CSSSEEEEECTTTCSE-EEEEECEETTEECCCEE
T ss_pred             -----EEEEECccC---cEEEEEECCC-CceEE--ecCCCEEEEE-CCCCeEEEEcCCCCeE-EEEEEeccCCccccccc
Confidence                 999999887   4555554322 11233  3567764444 4578899999998876 444332  11   3455


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      .+.|. +|+ +++..-.++.|.+.|..+++....+....-.+.  ......-......|||+|+++.|+++|-
T Consensus       176 ELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~--~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          176 ELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGILAE--AGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTGGGG--SCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             eeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcCccc--cccccCcCCceEEEEEcCCCCEEEEECC
Confidence            67886 664 555555788999999999776554432210000  0000111245688999999998888774

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.90  E-value=0.0038  Score=67.12  Aligned_cols=167  Identities=10%  Similarity=0.055  Sum_probs=107.2

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      .......+++|++.++.++++-..++.|..++...... ......+...-.....+++.+.+..++++-...+.      
T Consensus        27 ~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~------  100 (316)
T 1ijq_A           27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT------  100 (316)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTE------
T ss_pred             cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCE------
Confidence            34456789999986677777777788999999875110 01111122222456788998777766676666666      


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-CcEEEEeCCCCceeeEEeccCCCceE
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-KTVALWDLRNLKLKLHSFESHKDEIF  776 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g~I~IWDl~~~~~~~~~~~~h~~~V~  776 (860)
                               |.++|....   .....+.........++++|.+.+++++.... +.|..+++..... .......-...+
T Consensus       101 ---------I~~~~~~g~---~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~~~~~~~P~  167 (316)
T 1ijq_A          101 ---------VSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPN  167 (316)
T ss_dssp             ---------EEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEE
T ss_pred             ---------EEEEeCCCC---ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEEECCCCCce
Confidence                     888887643   11112222335678999999777666665443 7898888876543 222222345688


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      .++|++++..++++-+..+.|..+|+..
T Consensus       168 gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          168 GITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            9999998877666666778999999874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.90  E-value=0.00014  Score=80.50  Aligned_cols=233  Identities=12%  Similarity=0.028  Sum_probs=131.5

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEe---------CCCcEEEEEcCCCCcccCeeeccC----CCCCe
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVA---------DDQKLMIWDTRSHNVSKPSHTVDA----HTAEV  670 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs---------~DG~I~IWd~~~~~~~~~~~~~~~----h~~~V  670 (860)
                      ++..+....++...+.....- .+.++|++..++++.+         .++.|.+||..+.+....+..-.+    .....
T Consensus        61 V~ViD~~t~~v~~~I~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P  139 (386)
T 3sjl_D           61 QFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYP  139 (386)
T ss_dssp             EEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG
T ss_pred             EEEEECCCCeEEEEEECCCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCC
Confidence            333444444444444332222 4999995444444432         467899999998543222221110    01245


Q ss_pred             eEEEEccCCCeEEEEEeC-CCceeeeccccc------------------------ccCCCcEEEEeCCCCCCCCCeeeec
Q psy4578         671 NCLSFNPYSEYILATGSA-DKTQFEVEEEEE------------------------ENYDQKLMIWDTRSHNVSKPSHTVD  725 (860)
Q Consensus       671 ~~l~~sp~g~~llasgs~-Dg~i~~~~~~~~------------------------~~~dg~I~iwDl~~~~~~~~~~~~~  725 (860)
                      ..++++|||++++++... ++.+.+++....                        ...||++.+.++.+..  +......
T Consensus       140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g--~v~~~~~  217 (386)
T 3sjl_D          140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG--TPEITHT  217 (386)
T ss_dssp             GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSS--CCEEEEC
T ss_pred             ceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCC--eEEEeec
Confidence            679999999986666543 677766665433                        1357777778876521  1111111


Q ss_pred             CC----CCCeE-EEEEc-CCCCcEEEEeeCCCcEEEEeCCCCcee-eEEec---------c-CCCceEEEEEcCCCCCEE
Q psy4578         726 AH----TAEVN-CLSFN-PYSEYILATGSADKTVALWDLRNLKLK-LHSFE---------S-HKDEIFQVQWSPHNETIL  788 (860)
Q Consensus       726 ~h----~~~I~-sl~~s-p~g~~llasgs~Dg~I~IWDl~~~~~~-~~~~~---------~-h~~~V~~l~fsp~g~~lL  788 (860)
                      .+    ...+. ...|. ++|+. ++ .+.+|.|.+.|..+.... ...+.         + .......+++++++..++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~dG~~-~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ly  295 (386)
T 3sjl_D          218 EVFHPEDEFLINHPAYSQKAGRL-VW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY  295 (386)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEE-EE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             ceeccccccccccceeEcCCCcE-EE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEE
Confidence            11    12221 23553 67753 33 455799999999765421 11111         0 112233477799988766


Q ss_pred             EEEEC---------CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC-eEEEEEeCCCeEee
Q psy4578         789 ASSGT---------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVSEDNIMQK  856 (860)
Q Consensus       789 ~tgs~---------Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~-~Llasgs~Dg~IrI  856 (860)
                      ++-..         .+.|.+.|+.+.+....+.               -...+.++++++|++ .|+++...++.|.|
T Consensus       296 V~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~---------------vg~~~~~lavs~D~~~~ly~tn~~~~~VsV  358 (386)
T 3sjl_D          296 LLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE---------------MGHEIDSINVSQDEKPLLYALSTGDKTLYI  358 (386)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---------------EEEEECEEEECSSSSCEEEEEETTTTEEEE
T ss_pred             EEeccccccccCCCCCEEEEEECCCCeEEEEEE---------------CCCCcceEEECCCCCeEEEEEcCCCCeEEE
Confidence            55431         2579999999855443321               123678999999996 66666666777764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.87  E-value=0.0011  Score=73.10  Aligned_cols=154  Identities=10%  Similarity=-0.060  Sum_probs=95.3

Q ss_pred             CCcEEEEEeC--CC---cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578         633 HESLFGSVAD--DQ---KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL  707 (860)
Q Consensus       633 ~~~~lasgs~--DG---~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I  707 (860)
                      +++.+.++..  .+   .|.+||..+++   .+..+.....+  .++++|||++++++......      ...+..++.|
T Consensus        31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~---~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~------~~rg~~~~~v   99 (373)
T 2mad_H           31 DGRRSYINLPAHHSAIIQQWVLDAGSGS---ILGHVNGGFLP--NPVAAHSGSEFALASTSFSR------IAKGKRTDYV   99 (373)
T ss_pred             CCCEEEEeCCcccCCccEEEEEECCCCe---EEEEecCCCCC--CeEECCCCCEEEEEeccccc------cccCCCCCeE
Confidence            4555555442  33   88999998853   34444433333  89999999986666532111      0001123348


Q ss_pred             EEEeCCCCCCCCCeeeecCC-------CCCeEEEEEcCCCCcEEEEeeC-CCcEEEEeCCCCceeeEE-eccCCCceEEE
Q psy4578         708 MIWDTRSHNVSKPSHTVDAH-------TAEVNCLSFNPYSEYILATGSA-DKTVALWDLRNLKLKLHS-FESHKDEIFQV  778 (860)
Q Consensus       708 ~iwDl~~~~~~~~~~~~~~h-------~~~I~sl~~sp~g~~llasgs~-Dg~I~IWDl~~~~~~~~~-~~~h~~~V~~l  778 (860)
                      .+||..+.+   .+..+...       ......+.|+|+|++++++... ++.|.++| .+++. +.. +.. ..   ++
T Consensus       100 ~viD~~t~~---~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~-~~~~i~~-~~---~~  170 (373)
T 2mad_H          100 EVFDPVTFL---PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS-DDQLLSS-PT---CY  170 (373)
T ss_pred             EEEECCCCc---EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE-EeEEcCC-Cc---eE
Confidence            999998753   23222111       1234589999999985555433 58899999 88875 544 432 22   25


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578         779 QWSPHNETILASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~  807 (860)
                      .+.|+++..+++.+.||.+.+||. +++.
T Consensus       171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~  198 (373)
T 2mad_H          171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGA  198 (373)
T ss_pred             EEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence            566777666778889999999999 6443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.84  E-value=0.00062  Score=70.73  Aligned_cols=193  Identities=10%  Similarity=0.045  Sum_probs=119.9

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY  703 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~  703 (860)
                      ...+.|+  ++.++.+++.+|.|+++|+.+++....+  +.. ......++.  +++.++.+.-.++.            
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~-~~FgeGit~--~g~~Ly~ltw~~~~------------  117 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME--RLG-NIFAEGLAS--DGERLYQLTWTEGL------------  117 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT-TCCEEEEEE--CSSCEEEEESSSCE------------
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC-CcceeEEEE--eCCEEEEEEccCCE------------
Confidence            4578887  5788888899999999999997553333  222 111123444  45566666666666            


Q ss_pred             CCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc--CC---CceEEE
Q psy4578         704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--HK---DEIFQV  778 (860)
Q Consensus       704 dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~--h~---~~V~~l  778 (860)
                         +.+||..+.   +.+.++... ..-..++  +++..++++ ..++.|.++|..+.+. +.....  +.   ..++.+
T Consensus       118 ---v~V~D~~Tl---~~~~ti~~~-~eGwGLt--~Dg~~L~vS-dGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeL  186 (268)
T 3nok_A          118 ---LFTWSGMPP---QRERTTRYS-GEGWGLC--YWNGKLVRS-DGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINEL  186 (268)
T ss_dssp             ---EEEEETTTT---EEEEEEECS-SCCCCEE--EETTEEEEE-CSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEE
T ss_pred             ---EEEEECCcC---cEEEEEeCC-CceeEEe--cCCCEEEEE-CCCCEEEEEcCCCCeE-EEEEEeCCCCccccccccc
Confidence               999999887   445555432 2223444  457764544 5588999999998876 444432  21   245677


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      .|. +|+ +++..-.++.|.+.|..+++....+....-.+... .....-....++|||+|+++.|++||-
T Consensus       187 e~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~-~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          187 ECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVA-GQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHT-TTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECCCCccccc-ccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            887 674 55555568899999999877655443211000000 000112245688999999888888874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.76  E-value=0.0014  Score=67.48  Aligned_cols=194  Identities=9%  Similarity=0.110  Sum_probs=117.9

Q ss_pred             eeeeEeeccCCcEEEEEeCCC--cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         624 LIDVAWHLLHESLFGSVADDQ--KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG--~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      .-.+.|+.  +.++.+++.+|  .|+.+|+.+++.   ...... ............++.++...-.++.          
T Consensus        23 tqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv---~~~~~l-~~~~fgeGi~~~~~~ly~ltw~~~~----------   86 (243)
T 3mbr_X           23 TEGLFYLR--GHLYESTGETGRSSVRKVDLETGRI---LQRAEV-PPPYFGAGIVAWRDRLIQLTWRNHE----------   86 (243)
T ss_dssp             EEEEEEET--TEEEEEECCTTSCEEEEEETTTCCE---EEEEEC-CTTCCEEEEEEETTEEEEEESSSSE----------
T ss_pred             cccEEEEC--CEEEEECCCCCCceEEEEECCCCCE---EEEEeC-CCCcceeEEEEeCCEEEEEEeeCCE----------
Confidence            55888884  66777777654  899999999654   333221 1122222222335666676666666          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc--CC---CceE
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES--HK---DEIF  776 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~--h~---~~V~  776 (860)
                           +.+||..+.   +.+.++... ..-..++  +++..+++| ..++.|.++|..+.+. +.....  +.   ..++
T Consensus        87 -----v~v~D~~tl---~~~~ti~~~-~~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lN  153 (243)
T 3mbr_X           87 -----GFVYDLATL---TPRARFRYP-GEGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLN  153 (243)
T ss_dssp             -----EEEEETTTT---EEEEEEECS-SCCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCE-EEEEECEETTEECCCEE
T ss_pred             -----EEEEECCcC---cEEEEEeCC-CCceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeE-EEEEEEccCCcccccce
Confidence                 999999886   455555432 2223444  457765555 4588999999998876 444432  11   3456


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      .+.|. +|+ +++..-.+..|.+.|..+++....+....-.+.... ....-....++|+|+|++..|++||-
T Consensus       154 eLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~-~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          154 ELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA-LTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS-CCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             eeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc-ccCCcCCceEEEEEcCCCCEEEEECC
Confidence            67776 564 555554678999999999776655443211100000 00112245688999999988888874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.75  E-value=0.00056  Score=75.55  Aligned_cols=159  Identities=10%  Similarity=0.021  Sum_probs=98.5

Q ss_pred             eeEeeccCCcEEEEEeC-----CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         626 DVAWHLLHESLFGSVAD-----DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       626 ~v~~sp~~~~~lasgs~-----DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      .....| +++.+++...     ++.|.+.|..+.   +.+..+..-..+ . ++++|+|++++++......      ...
T Consensus        37 ~~~~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~---~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r------~~~  104 (386)
T 3sjl_D           37 LEAPAP-DARRVYVNDPAHFAAVTQQFVIDGEAG---RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSR------IAR  104 (386)
T ss_dssp             CCCCCC-CTTEEEEEECGGGCSSEEEEEEETTTT---EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEE------TTE
T ss_pred             eeccCC-CCCEEEEEcCcccCCCCEEEEEECCCC---eEEEEEECCCCC-c-EEECCCCCEEEEEcccccc------ccc
Confidence            344566 4555444443     689999999885   334444433334 4 9999999986666531000      000


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCC-------CCCeEEEEEcCCCCcEEEEeeC-CCcEEEEeCCCCceeeEEeccCC
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAH-------TAEVNCLSFNPYSEYILATGSA-DKTVALWDLRNLKLKLHSFESHK  772 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h-------~~~I~sl~~sp~g~~llasgs~-Dg~I~IWDl~~~~~~~~~~~~h~  772 (860)
                      +..++.|.+||..+.   +.+..+.-.       ......++++|+|++++++... ++.|.++|+.+.+. +..+....
T Consensus       105 G~~~~~VsviD~~t~---~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v-v~tI~v~g  180 (386)
T 3sjl_D          105 GERTDYVEVFDPVTL---LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPD  180 (386)
T ss_dssp             EEEEEEEEEECTTTC---CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS
T ss_pred             CCCCCEEEEEECCCC---eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE-EEEEECCC
Confidence            001223999999987   334433211       1245679999999986655433 78999999999886 55554221


Q ss_pred             CceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                        .  ....|.|...+++.+.||.+.+.++..
T Consensus       181 --~--~~~~P~g~~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          181 --C--YHIFPTAPDTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             --E--EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             --c--ceeecCCCceeEEECCCCCEEEEECCC
Confidence              1  223355544467888899999988876

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.70  E-value=6e-05  Score=87.02  Aligned_cols=216  Identities=8%  Similarity=0.052  Sum_probs=129.1

Q ss_pred             cceeeeEee--ccCCcEEEEEe------------------CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         622 RLLIDVAWH--LLHESLFGSVA------------------DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       622 ~~V~~v~~s--p~~~~~lasgs------------------~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .....+++.  | ++.++++++                  .++.+.++|..+.   +...++..- +....++.+|+|++
T Consensus       134 ~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~---~v~~qI~Vg-g~pd~~~~spdGk~  208 (595)
T 1fwx_A          134 KGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKW---EVAWQVLVS-GNLDNCDADYEGKW  208 (595)
T ss_dssp             CSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTT---EEEEEEEES-SCCCCEEECSSSSE
T ss_pred             CCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEEEECCCC---eEEEEEEeC-CCccceEECCCCCE
Confidence            456788873  6 566666553                  3567999999874   333333221 23466789999998


Q ss_pred             EEEEEeCCCc--------------eeeeccccc------c--cCCCcEEEEeCCCCCCCCC-eeeecCCCCCeEEEEEcC
Q psy4578         682 ILATGSADKT--------------QFEVEEEEE------E--NYDQKLMIWDTRSHNVSKP-SHTVDAHTAEVNCLSFNP  738 (860)
Q Consensus       682 llasgs~Dg~--------------i~~~~~~~~------~--~~dg~I~iwDl~~~~~~~~-~~~~~~h~~~I~sl~~sp  738 (860)
                      +++++.....              +.+.+....      +  ..-+.|.+.|..+.+. .. +..+.. .....++.++|
T Consensus       209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~-~~~~~~Ipv-g~~PhGv~~sP  286 (595)
T 1fwx_A          209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS-SLFTRYIPI-ANNPHGCNMAP  286 (595)
T ss_dssp             EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC-CSSEEEEEE-ESSCCCEEECT
T ss_pred             EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC-ceeEEEEec-CCCceEEEEcC
Confidence            6666644422              111111110      0  1124599999987211 22 333321 23456899999


Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCce-----------eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCc
Q psy4578         739 YSEYILATGSADKTVALWDLRNLKL-----------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       739 ~g~~llasgs~Dg~I~IWDl~~~~~-----------~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~  807 (860)
                      ||+++++++..+.+|.++|+.+...           ..... .-......++|+|+| +..++.-.|+.|.+||+.....
T Consensus       287 DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~  364 (595)
T 1fwx_A          287 DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIR  364 (595)
T ss_dssp             TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHH
T ss_pred             CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhh
Confidence            9999899988999999999986521           12222 234567899999999 6677778999999999876210


Q ss_pred             ccccccccCCCCccEEEecCccCc-----eEEEEEccCCCeEEEEEeC
Q psy4578         808 EQSTEDAEDGPPELLFIHGGHTAK-----ISDFSWNPNEPWVICSVSE  850 (860)
Q Consensus       808 ~~~~~~~~~~~~~~i~~~~~h~~~-----I~~i~~spdg~~Llasgs~  850 (860)
                      .  ..  .+.....+.....|..+     -.++..+|||++|+++...
T Consensus       365 ~--~~--g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~  408 (595)
T 1fwx_A          365 A--YA--GEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF  408 (595)
T ss_dssp             H--HH--TCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred             h--hc--ccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence            0  00  00011233333333222     1233568999998877643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.70  E-value=0.01  Score=66.00  Aligned_cols=169  Identities=10%  Similarity=0.067  Sum_probs=110.5

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      +......+..++|++.++.++.+-...+.|..+++..... ......+.........+++.+.+..++++-...+.    
T Consensus       107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~----  182 (400)
T 3p5b_L          107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT----  182 (400)
T ss_dssp             EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE----
T ss_pred             eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCe----
Confidence            3445567899999986677777766778999998865211 01122222234567889998877767777666666    


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC-CCcEEEEeCCCCceeeEEeccCCCc
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA-DKTVALWDLRNLKLKLHSFESHKDE  774 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~-Dg~I~IWDl~~~~~~~~~~~~h~~~  774 (860)
                                 |.+.++...   .....+.........++++|.+.+++++-.. .+.|...++..... .......-..
T Consensus       183 -----------I~~~~~~g~---~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-~~~~~~~l~~  247 (400)
T 3p5b_L          183 -----------VSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQW  247 (400)
T ss_dssp             -----------EEEECTTTC---SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-EEEECSSCSC
T ss_pred             -----------EEEEeCCCC---ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-EEEEECCCCc
Confidence                       888887653   1222222234457899999977766665433 47899999887554 2223333457


Q ss_pred             eEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         775 IFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      .+.+++++++..+.++-+..+.|..+|+..
T Consensus       248 P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          248 PNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             eEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence            899999998877666666778899999865

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.69  E-value=0.0014  Score=69.83  Aligned_cols=136  Identities=14%  Similarity=0.060  Sum_probs=87.3

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR  713 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~  713 (860)
                      +..+..++.+|.+..+|.. +..   ..........+.++...+++.  +..|+.++.               +..||..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~---~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~---------------l~~~d~~  165 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTE---KWRFKTKKAIYATPIVSEDGT--IYVGSNDNY---------------LYAINPD  165 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCE---EEEEECSSCCCSCCEECTTSC--EEEECTTSE---------------EEEECTT
T ss_pred             CCEEEEEecCCEEEEEcCC-CCE---EEEEcCCCceeeeeEEcCCCE--EEEEcCCCE---------------EEEECCC
Confidence            4456677888999999987 432   223333344566667776676  455666666               7777776


Q ss_pred             CCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC
Q psy4578         714 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT  793 (860)
Q Consensus       714 ~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~  793 (860)
                       +   ............+.++...+++. ++ .|+  +.+..|| .++.. ..........+.++...++|.  +..++.
T Consensus       166 -g---~~~~~~~~~~~~~~~~~~d~~g~-l~-v~t--~~l~~~d-~~g~~-~~~~~~~~~~~~~~~~~~~g~--l~v~t~  233 (330)
T 3hxj_A          166 -G---TEKWRFKTNDAITSAASIGKDGT-IY-FGS--DKVYAIN-PDGTE-KWNFYAGYWTVTRPAISEDGT--IYVTSL  233 (330)
T ss_dssp             -S---CEEEEEECSSCCCSCCEECTTCC-EE-EES--SSEEEEC-TTSCE-EEEECCSSCCCSCCEECTTSC--EEEEET
T ss_pred             -C---CEeEEEecCCCceeeeEEcCCCE-EE-EEe--CEEEEEC-CCCcE-EEEEccCCcceeceEECCCCe--EEEEcC
Confidence             4   33333333445566777777776 34 444  8899999 55554 444444556677888888875  567777


Q ss_pred             CCcEEEEEC
Q psy4578         794 DRRLHVWDL  802 (860)
Q Consensus       794 Dg~I~iWdl  802 (860)
                      ++.+..+|.
T Consensus       234 ~~gl~~~~~  242 (330)
T 3hxj_A          234 DGHLYAINP  242 (330)
T ss_dssp             TTEEEEECT
T ss_pred             CCeEEEECC
Confidence            888888874

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.68  E-value=0.00071  Score=78.14  Aligned_cols=207  Identities=12%  Similarity=0.121  Sum_probs=124.7

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEE-c-cCCCeEEEEE------eCCCceeeecccccccCCC
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF-N-PYSEYILATG------SADKTQFEVEEEEEENYDQ  705 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~-s-p~g~~llasg------s~Dg~i~~~~~~~~~~~dg  705 (860)
                      ..++++...++.|.+.|+.+.+..+.+ .+ ........+++ + |++.++++++      ..||.    .+......++
T Consensus       102 ~~lfVnd~~~~rVavIdl~t~~~~~ii-~i-p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~----~l~~~~~~~~  175 (595)
T 1fwx_A          102 RFLFMNDKANTRVARVRCDVMKCDAIL-EI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT----NMEDVANYVN  175 (595)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEE-EC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS----STTCGGGEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCceEeeEE-eC-CCCCCCcceeeeecCCCcEEEEecccccccCCCCc----ccccccccCc
Confidence            334555555678999999985332222 22 22345788888 5 9999866654      23554    1222344566


Q ss_pred             cEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----------------------------------
Q psy4578         706 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----------------------------------  750 (860)
Q Consensus       706 ~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----------------------------------  750 (860)
                      .+.++|..+.   +....+.-. +.-..++.+|+|+++++++...                                   
T Consensus       176 ~vtvID~~t~---~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~  251 (595)
T 1fwx_A          176 VFTAVDADKW---EVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  251 (595)
T ss_dssp             EEEEEETTTT---EEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             eEEEEECCCC---eEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence            7999999875   333333311 1345678999999755554332                                   


Q ss_pred             --CcEEEEeCCC--CceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec
Q psy4578         751 --KTVALWDLRN--LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG  826 (860)
Q Consensus       751 --g~I~IWDl~~--~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~  826 (860)
                        +.|.+.|.++  +...+..... .....++.++|||+++++++..+.+|.++|+.+.....  ... -.....+....
T Consensus       252 ~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~--~~~-l~~~~~v~~~v  327 (595)
T 1fwx_A          252 ELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YEN-ADPRSAVVAEP  327 (595)
T ss_dssp             EETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HSC-CCGGGGEEECC
T ss_pred             EECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc--ccc-cCcccceEEEc
Confidence              2466777776  3221222321 23456799999999988888899999999999642110  000 00011121122


Q ss_pred             CccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         827 GHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       827 ~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      .-......++|+++| ++.++.--|+.|.
T Consensus       328 ~vG~gP~h~aF~~dG-~aY~t~~ldsqV~  355 (595)
T 1fwx_A          328 ELGLGPLHTAFDGRG-NAYTSLFLDSQVV  355 (595)
T ss_dssp             BCCSCEEEEEECTTS-EEEEEETTTTEEE
T ss_pred             CCCCCcceEEECCCC-eEEEEEecCCcEE
Confidence            233567899999999 7888888777764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.66  E-value=0.018  Score=61.93  Aligned_cols=165  Identities=9%  Similarity=0.017  Sum_probs=109.1

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      .......++.|++.++.++.+-...+.|..++........  ..+...-.....+++.+.+..++.+-...+.       
T Consensus        32 ~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~--~~~~~~l~~p~glavd~~~g~ly~~d~~~~~-------  102 (318)
T 3sov_A           32 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLLSPDGLACDWLGEKLYWTDSETNR-------  102 (318)
T ss_dssp             EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC--EEEEECCSCCCEEEEETTTTEEEEEETTTTE-------
T ss_pred             cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE--EEEcCCCCCccEEEEEcCCCeEEEEECCCCE-------
Confidence            3445678999998677777777778899999987642111  1111222456788888877766776655555       


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee-CCCcEEEEeCCCCceeeEEeccCCCceEE
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS-ADKTVALWDLRNLKLKLHSFESHKDEIFQ  777 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~  777 (860)
                              |.++++...   ...............++++|.+.+++++-. ..+.|...++..... .......-...+.
T Consensus       103 --------I~~~~~dG~---~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~l~~Png  170 (318)
T 3sov_A          103 --------IEVSNLDGS---LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYWPNG  170 (318)
T ss_dssp             --------EEEEETTSC---SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEE
T ss_pred             --------EEEEECCCC---cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEEECCCCCccE
Confidence                    888887653   111222234456789999997776555542 357898888876543 2222233356789


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         778 VQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       778 l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ++|++++..+.++=+..+.|..+|+..
T Consensus       171 lavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          171 LTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            999998777666666778999999864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.62  E-value=0.014  Score=62.52  Aligned_cols=178  Identities=10%  Similarity=0.005  Sum_probs=110.0

Q ss_pred             CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCC-CCCee
Q psy4578         644 QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV-SKPSH  722 (860)
Q Consensus       644 G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~-~~~~~  722 (860)
                      ..|+..|+.+...   ...+ .....+..++|++.+..++.+....+.               |..+++..... .....
T Consensus        10 ~~I~~i~~~~~~~---~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~---------------I~~~~~~g~~~~~~~~~   70 (316)
T 1ijq_A           10 HEVRKMTLDRSEY---TSLI-PNLRNVVALDTEVASNRIYWSDLSQRM---------------ICSTQLDRAHGVSSYDT   70 (316)
T ss_dssp             SSEEEEETTSCCC---EEEE-CSCSSEEEEEEETTTTEEEEEETTTTE---------------EEEEEC--------CEE
T ss_pred             CeEEEEECCCcce---Eehh-cCCCceEEEEEEeCCCEEEEEECCCCc---------------EEEEECCCCCCCcccEE
Confidence            5689999887432   2222 234567899999988777777766666               77887765110 01111


Q ss_pred             eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-CcEEEEE
Q psy4578         723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHVWD  801 (860)
Q Consensus       723 ~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-g~I~iWd  801 (860)
                      .+...-....++++++.+..++++-..++.|.++|...... .............++++|.+..++++.... +.|...+
T Consensus        71 ~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~  149 (316)
T 1ijq_A           71 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  149 (316)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence            22222245578999876666677767788999999886543 222333345678999999777666665443 7888888


Q ss_pred             CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      +.....            ..+  ....-.....++|++++..|+++-+..+.|.
T Consensus       150 ~dG~~~------------~~~--~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~  189 (316)
T 1ijq_A          150 LNGVDI------------YSL--VTENIQWPNGITLDLLSGRLYWVDSKLHSIS  189 (316)
T ss_dssp             TTSCCE------------EEE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCCe------------EEE--EECCCCCceEEEEeccCCEEEEEECCCCeEE
Confidence            754111            001  1112345678999988877777776666554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.59  E-value=0.0037  Score=75.73  Aligned_cols=201  Identities=9%  Similarity=0.055  Sum_probs=110.0

Q ss_pred             ceeeeEee-ccCCcEEE-EEeCCC----cEEEEEcCCC-CcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         623 LLIDVAWH-LLHESLFG-SVADDQ----KLMIWDTRSH-NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       623 ~V~~v~~s-p~~~~~la-sgs~DG----~I~IWd~~~~-~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      .+...+|+ | +++.+| +.+.+|    .|+++|+.++ +...  ..+   .....+++|+|||+.++.+......    
T Consensus       175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~---~~~~~~~~WspDg~~l~y~~~d~~~----  244 (751)
T 2xe4_A          175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKV---SGTNGEIVWGPDHTSLFYVTKDETL----  244 (751)
T ss_dssp             EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCE---EEECSCCEECSSTTEEEEEEECTTC----
T ss_pred             EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccc---cCceeeEEEecCCCEEEEEEECCCC----
Confidence            57789999 8 555554 444444    4999999886 4211  111   1124578999999986666543210    


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeec-CCCCCeEEEEEcCCCCcEEEEeeC--CCcEEEEeCCCCceee--EEec-
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSA--DKTVALWDLRNLKLKL--HSFE-  769 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs~--Dg~I~IWDl~~~~~~~--~~~~-  769 (860)
                             ...+|..+++.++.. .....+. .+.....++.|+|+|++++++...  ...|.++|+.++....  ..+. 
T Consensus       245 -------~~~~v~~~~lgt~~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~  316 (751)
T 2xe4_A          245 -------RENKVWRHVMGKLQS-EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP  316 (751)
T ss_dssp             -------CEEEEEEEETTSCGG-GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred             -------CCCEEEEEECCCCch-hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence                   112477788876521 1112222 223456788999999986666543  3458888988753212  3332 


Q ss_pred             cCCCceEEEEEcCCCCCEEEEEECC--C--cEEEEECCCCCcccccccccCCCCcc-EEEecCccCceEEEEEccCCCeE
Q psy4578         770 SHKDEIFQVQWSPHNETILASSGTD--R--RLHVWDLSKIGEEQSTEDAEDGPPEL-LFIHGGHTAKISDFSWNPNEPWV  844 (860)
Q Consensus       770 ~h~~~V~~l~fsp~g~~lL~tgs~D--g--~I~iWdl~~~~~~~~~~~~~~~~~~~-i~~~~~h~~~I~~i~~spdg~~L  844 (860)
                      .......++.|+. |+.+++....+  +  .|..+|+.+....           .. +... .....+.++.+  .+.++
T Consensus       317 ~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~-----------~~~li~~-~~~~~l~~~~~--~~~~l  381 (751)
T 2xe4_A          317 REKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDW-----------SHVLVDH-SEDVFMESIAV--RSNYL  381 (751)
T ss_dssp             CCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCC-----------CCEEECC-CSSEEEEEEEE--CSSEE
T ss_pred             CCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccc-----------eeeEECC-CCCcEEEEEEE--ECCEE
Confidence            2344556666654 55555555544  3  5666665532110           11 1110 11113444444  45667


Q ss_pred             EEEEeCCCeEee
Q psy4578         845 ICSVSEDNIMQK  856 (860)
Q Consensus       845 lasgs~Dg~IrI  856 (860)
                      +++...++..++
T Consensus       382 v~~~~~~g~~~l  393 (751)
T 2xe4_A          382 VVAGRRAGLTRI  393 (751)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEeCCEEEE
Confidence            878887776554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.59  E-value=0.0014  Score=70.00  Aligned_cols=182  Identities=10%  Similarity=-0.030  Sum_probs=112.7

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN  702 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~  702 (860)
                      .+.++...+ ++. +..|+.++.+..||.. +..   ..........+.++...+++.  +..|+  +.           
T Consensus       138 ~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~---~~~~~~~~~~~~~~~~d~~g~--l~v~t--~~-----------  196 (330)
T 3hxj_A          138 IYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTE---KWRFKTNDAITSAASIGKDGT--IYFGS--DK-----------  196 (330)
T ss_dssp             CCSCCEECT-TSC-EEEECTTSEEEEECTT-SCE---EEEEECSSCCCSCCEECTTCC--EEEES--SS-----------
T ss_pred             eeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCE---eEEEecCCCceeeeEEcCCCE--EEEEe--CE-----------
Confidence            356666664 444 5567788999999987 432   223333345567777777776  34444  44           


Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcC
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  782 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp  782 (860)
                          +..+| .++   ............+.++...++|.  +..|+.++.+..+|... .. +..+......+.++...+
T Consensus       197 ----l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~~g-~~-~~~~~~~~~~~~~~~~~~  264 (330)
T 3hxj_A          197 ----VYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLYAINPDG-TE-KWRFKTGKRIESSPVIGN  264 (330)
T ss_dssp             ----EEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC--EEEEETTTEEEEECTTS-CE-EEEEECSSCCCSCCEECT
T ss_pred             ----EEEEC-CCC---cEEEEEccCCcceeceEECCCCe--EEEEcCCCeEEEECCCC-CE-eEEeeCCCCccccceEcC
Confidence                77787 443   33334444445678888888876  55677788898888543 33 344443344444566666


Q ss_pred             CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         783 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       783 ~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|.  +..++.+|.+..+|. +++.              ..........+.++..+++|.  +..++.+|.+++
T Consensus       265 ~g~--l~v~t~~ggl~~~d~-~g~~--------------~~~~~~~~~~~~~~~~d~~g~--l~~gt~~G~~~~  319 (330)
T 3hxj_A          265 TDT--IYFGSYDGHLYAINP-DGTE--------------KWNFETGSWIIATPVIDENGT--IYFGTRNGKFYA  319 (330)
T ss_dssp             TSC--EEEECTTCEEEEECT-TSCE--------------EEEEECSSCCCSCCEECTTCC--EEEECTTSCEEE
T ss_pred             CCe--EEEecCCCCEEEECC-CCcE--------------EEEEEcCCccccceEEcCCCE--EEEEcCCCeEEE
Confidence            674  678888989999985 3222              111222244567778888888  345788888876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.57  E-value=0.00089  Score=75.14  Aligned_cols=153  Identities=9%  Similarity=0.049  Sum_probs=94.3

Q ss_pred             CCcEE-EEEeCC----CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578         633 HESLF-GSVADD----QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL  707 (860)
Q Consensus       633 ~~~~l-asgs~D----G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I  707 (860)
                      +++.+ ++...+    +.|.++|..+.   +.+..+..-..+  .+.++|||++++++....+.      ...+..++.|
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~---~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~------~~~G~~~~~V  151 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTG---RILGMTDGGFLP--HPVAAEDGSFFAQASTVFER------IARGKRTDYV  151 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEE------TTEEEEEEEE
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCC---EEEEEEECCCCC--ceEECCCCCEEEEEeccccc------cccCCCCCEE
Confidence            44544 444433    79999999985   334444333344  89999999986666531000      0000112239


Q ss_pred             EEEeCCCCCCCCCeeeecCC-------CCCeEEEEEcCCCCcEEEEeeC-CCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578         708 MIWDTRSHNVSKPSHTVDAH-------TAEVNCLSFNPYSEYILATGSA-DKTVALWDLRNLKLKLHSFESHKDEIFQVQ  779 (860)
Q Consensus       708 ~iwDl~~~~~~~~~~~~~~h-------~~~I~sl~~sp~g~~llasgs~-Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~  779 (860)
                      .++|..+.   +.+..+.-.       ......+.++|+|++++++... ++.|.+.|+.+.+. +..+..-.  .  ..
T Consensus       152 sviD~~t~---~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g--~--~~  223 (426)
T 3c75_H          152 EVFDPVTF---LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD--C--YH  223 (426)
T ss_dssp             EEECTTTC---CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS--E--EE
T ss_pred             EEEECCCC---cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE-EEEEEcCC--c--ee
Confidence            99999887   333333211       1234578999999985555433 68899999999886 55555311  1  33


Q ss_pred             EcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         780 WSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       780 fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ..|+|...+++.+.||.+.+.+...
T Consensus       224 ~~p~g~~~~v~~~~dG~~~~V~~~~  248 (426)
T 3c75_H          224 IFPASPTVFYMNCRDGSLARVDFAD  248 (426)
T ss_dssp             EEEEETTEEEEEETTSSEEEEECCT
T ss_pred             eccCCCcEEEEEcCCCCEEEEECCC
Confidence            4566655677777888888888744

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.57  E-value=0.0086  Score=66.32  Aligned_cols=176  Identities=9%  Similarity=0.051  Sum_probs=112.9

Q ss_pred             CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCee
Q psy4578         643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH  722 (860)
Q Consensus       643 DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~  722 (860)
                      ...|+.+++.....    ..+......+..++|++.+..++.+-...+.               |..++.....   ...
T Consensus        95 ~~~I~~i~~~~~~~----~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~---------------I~r~~~~g~~---~~~  152 (386)
T 3v65_B           95 RIDIRQVLPHRSEY----TLLLNNLENAIALDFHHRRELVFWSDVTLDR---------------ILRANLNGSN---VEE  152 (386)
T ss_dssp             BSCEEEECTTSCCC----EEEECSCSCEEEEEEETTTTEEEEEETTTTE---------------EEEEETTSCC---EEE
T ss_pred             CccceeeccCCCcE----EEEecCCCccEEEEEecCCCeEEEEeCCCCc---------------EEEEecCCCC---cEE
Confidence            45788888875322    2222234567899999877777777666666               8888877542   111


Q ss_pred             eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-CcEEEEE
Q psy4578         723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHVWD  801 (860)
Q Consensus       723 ~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-g~I~iWd  801 (860)
                      .+.........+++.+.+..++++-...+.|.+.++..... .......-.....++++|.+..++++-... +.|..++
T Consensus       153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence            22222234567888887776777777788899999876553 233333445678999999887766665555 7888888


Q ss_pred             CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      +......              ............++|+|++..|+++-+..+.|.
T Consensus       232 ~dG~~~~--------------~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~  271 (386)
T 3v65_B          232 MDGSGRR--------------IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  271 (386)
T ss_dssp             TTSCSCE--------------EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CCCCCcE--------------EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEE
Confidence            7642111              111112334678999988777887777766654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.56  E-value=0.015  Score=63.33  Aligned_cols=176  Identities=9%  Similarity=0.033  Sum_probs=112.8

Q ss_pred             CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCee
Q psy4578         643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH  722 (860)
Q Consensus       643 DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~  722 (860)
                      ...|+..++....    ...+......+..++|++.+..++.+-...+.               |..+++....   ...
T Consensus        52 ~~~I~~i~~~g~~----~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~---------------I~r~~~~g~~---~~~  109 (349)
T 3v64_C           52 RIDIRQVLPHRSE----YTLLLNNLENAIALDFHHRRELVFWSDVTLDR---------------ILRANLNGSN---VEE  109 (349)
T ss_dssp             BSCEEEECTTSCC----EEEEECSCSCEEEEEEETTTTEEEEEETTTTE---------------EEEEETTSCS---CEE
T ss_pred             ccceEEEeCCCCe----eEEeecCCCceEEEEEeccccEEEEEeccCCc---------------eEEEecCCCC---ceE
Confidence            3467777776532    22222234457899999888777777666666               8888887542   112


Q ss_pred             eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-CcEEEEE
Q psy4578         723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHVWD  801 (860)
Q Consensus       723 ~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-g~I~iWd  801 (860)
                      ...........+++.+.+..++++-...+.|.+.+...... .......-.....++++|.+..++++-... +.|..++
T Consensus       110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            22222344578999987766777777788999999887653 223333345678999999777766666555 7888888


Q ss_pred             CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      +........              ..........++|+|++..|+++-+..+.|.
T Consensus       189 ~dG~~~~~~--------------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~  228 (349)
T 3v64_C          189 MDGSGRRII--------------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE  228 (349)
T ss_dssp             TTSCSCEES--------------CCSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCCcEEE--------------EECCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence            764221100              0111234678999987777777776666554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.48  E-value=0.003  Score=67.78  Aligned_cols=190  Identities=9%  Similarity=0.054  Sum_probs=108.9

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-----------------CCCCCeeEEEEcc-CCCeEE
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-----------------AHTAEVNCLSFNP-YSEYIL  683 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-----------------~h~~~V~~l~~sp-~g~~ll  683 (860)
                      ....+++|++ +++++.++..++.|..|+..++.. .......                 .....+.++++.+ ++. ++
T Consensus        19 ~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~   95 (322)
T 2fp8_A           19 YAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LY   95 (322)
T ss_dssp             SCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EE
T ss_pred             CCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EE
Confidence            3466888997 577677788889999998875321 1111000                 0113578899997 554 44


Q ss_pred             EEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeee-ecC-CCCCeEEEEEcC-CCCcEEEEeeC-----------
Q psy4578         684 ATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT-VDA-HTAEVNCLSFNP-YSEYILATGSA-----------  749 (860)
Q Consensus       684 asgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~-~~~-h~~~I~sl~~sp-~g~~llasgs~-----------  749 (860)
                      ++ ...+.               +..+|..++.. ..+.. ..+ .......+++.+ +|. ++++...           
T Consensus        96 v~-d~~~~---------------i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~  157 (322)
T 2fp8_A           96 IV-DCYYH---------------LSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQI  157 (322)
T ss_dssp             EE-ETTTE---------------EEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHH
T ss_pred             EE-ECCCC---------------EEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE-EEEECCccccccccccee
Confidence            44 33333               66666554311 11111 111 123467899999 887 4554322           


Q ss_pred             ------CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEE
Q psy4578         750 ------DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF  823 (860)
Q Consensus       750 ------Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~  823 (860)
                            +|.|..||..++..  ..+.........++|+|+|+.++++-+.++.|..|++.....         +......
T Consensus       158 ~~~~~~~g~v~~~d~~~~~~--~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~---------~~~~~~~  226 (322)
T 2fp8_A          158 MDTSDKTGRLIKYDPSTKET--TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK---------GTAEVLV  226 (322)
T ss_dssp             HHHTCCCEEEEEEETTTTEE--EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT---------TCEEEEE
T ss_pred             hcccCCCceEEEEeCCCCEE--EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC---------CccceEE
Confidence                  36788899876653  112111234567999999986566666778999999875211         0011111


Q ss_pred             EecCccCceEEEEEccCCCeEEEEE
Q psy4578         824 IHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       824 ~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                      ..   .+ ...++++++|.. .++.
T Consensus       227 ~~---~g-P~gi~~d~~G~l-~va~  246 (322)
T 2fp8_A          227 KI---PN-PGNIKRNADGHF-WVSS  246 (322)
T ss_dssp             EC---SS-EEEEEECTTSCE-EEEE
T ss_pred             eC---CC-CCCeEECCCCCE-EEEe
Confidence            11   22 677888888874 4443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.44  E-value=0.017  Score=69.98  Aligned_cols=169  Identities=10%  Similarity=0.068  Sum_probs=110.6

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCc-ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNV-SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~-~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      +......+.+++|++.++.++++-...+.|+.+++..... ......+.........|++.+.++.|+++-...+.    
T Consensus       419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~----  494 (791)
T 3m0c_C          419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT----  494 (791)
T ss_dssp             EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTE----
T ss_pred             eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCe----
Confidence            3344566789999986677777777778899998874211 01122222234566789999888877777766666    


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-CcEEEEeCCCCceeeEEeccCCCc
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-KTVALWDLRNLKLKLHSFESHKDE  774 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g~I~IWDl~~~~~~~~~~~~h~~~  774 (860)
                                 |.+.++...   .....+.........|+++|.+.+|+++-..+ +.|...++..... .......-..
T Consensus       495 -----------I~v~~ldG~---~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~~l~~  559 (791)
T 3m0c_C          495 -----------VSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQW  559 (791)
T ss_dssp             -----------EEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSC
T ss_pred             -----------EEEEeCCCC---eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEeCCCCC
Confidence                       888888753   11122223345678999999877666664333 7899999887654 3333333467


Q ss_pred             eEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         775 IFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      .+.|++++.+..|+++=...+.|...++..
T Consensus       560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          560 PNGITLDLLSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence            899999988777666656677899998865

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.44  E-value=0.029  Score=58.18  Aligned_cols=196  Identities=11%  Similarity=0.149  Sum_probs=116.3

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-CCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      +.+..++|+|+++.++++...++.|...|.. +..   ...+. +-....-.|++.+++.+ +++.-.++.         
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v---~~~i~l~g~~D~EGIa~~~~g~~-~vs~E~~~~---------   92 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL---IRTIPLDFVKDLETIEYIGDNQF-VISDERDYA---------   92 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE---EEEEECSSCSSEEEEEECSTTEE-EEEETTTTE---------
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE---EEEEecCCCCChHHeEEeCCCEE-EEEECCCCc---------
Confidence            5699999999767778888889999999987 432   33321 12256788999887763 455434555         


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeee------cCCCCCeEEEEEcCCCCcEEEEeeCCC-cEEEEeCCCCceeeEEec----
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTV------DAHTAEVNCLSFNPYSEYILATGSADK-TVALWDLRNLKLKLHSFE----  769 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~------~~h~~~I~sl~~sp~g~~llasgs~Dg-~I~IWDl~~~~~~~~~~~----  769 (860)
                            +.++++........+...      ........+++|+|.+..++++.-.+. .|..|+-......+....    
T Consensus        93 ------l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~  166 (255)
T 3qqz_A           93 ------IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL  166 (255)
T ss_dssp             ------EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH
T ss_pred             ------EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh
Confidence                  555554432110001111      123456789999999876555544443 455554100100112111    


Q ss_pred             ---cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec-Cc------cCceEEEEEcc
Q psy4578         770 ---SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GH------TAKISDFSWNP  839 (860)
Q Consensus       770 ---~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~-~h------~~~I~~i~~sp  839 (860)
                         .+...+.+++++|....+++....++.+..+|.... ...            ...+. +.      -..--.|+|++
T Consensus       167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~------------~~~L~~g~~~l~~~~~qpEGia~d~  233 (255)
T 3qqz_A          167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIG------------EMSLTKGSRGLSHNIKQAEGVAMDA  233 (255)
T ss_dssp             HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEE------------EEECSTTGGGCSSCCCSEEEEEECT
T ss_pred             ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEE------------EEEcCCccCCcccccCCCCeeEECC
Confidence               133457899999988877878778888999986642 111            11111 11      13567899999


Q ss_pred             CCCeEEEEEeCCC
Q psy4578         840 NEPWVICSVSEDN  852 (860)
Q Consensus       840 dg~~Llasgs~Dg  852 (860)
                      +|+ |+++ ++.+
T Consensus       234 ~G~-lyIv-sE~n  244 (255)
T 3qqz_A          234 SGN-IYIV-SEPN  244 (255)
T ss_dssp             TCC-EEEE-ETTT
T ss_pred             CCC-EEEE-cCCc
Confidence            998 5555 4544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.36  E-value=0.0024  Score=66.80  Aligned_cols=151  Identities=14%  Similarity=0.150  Sum_probs=102.0

Q ss_pred             eeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCC
Q psy4578         626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQ  705 (860)
Q Consensus       626 ~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg  705 (860)
                      .+++.  ++.+.++.-.++.+.++|..+.   +.+.++......  ...++++|..++++. .++.              
T Consensus        70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~---~v~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~--------------  127 (266)
T 2iwa_A           70 GLTLL--NEKLYQVVWLKNIGFIYDRRTL---SNIKNFTHQMKD--GWGLATDGKILYGSD-GTSI--------------  127 (266)
T ss_dssp             EEEEE--TTEEEEEETTCSEEEEEETTTT---EEEEEEECCSSS--CCEEEECSSSEEEEC-SSSE--------------
T ss_pred             EEEEe--CCEEEEEEecCCEEEEEECCCC---cEEEEEECCCCC--eEEEEECCCEEEEEC-CCCe--------------
Confidence            45554  4567777778899999999874   334444321111  233556787766543 4555              


Q ss_pred             cEEEEeCCCCCCCCCeeeecC--C---CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccC---------
Q psy4578         706 KLMIWDTRSHNVSKPSHTVDA--H---TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH---------  771 (860)
Q Consensus       706 ~I~iwDl~~~~~~~~~~~~~~--h---~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h---------  771 (860)
                       |.++|..+.+   ....+.-  +   -...+.+.|. +|. +++....++.|.+.|..+++. +..+...         
T Consensus       128 -l~viD~~t~~---v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~~~~  200 (266)
T 2iwa_A          128 -LYEIDPHTFK---LIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTL-LGWILLPNLRKKLIDE  200 (266)
T ss_dssp             -EEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHHHHT
T ss_pred             -EEEEECCCCc---EEEEEEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcE-EEEEECCCcccccccc
Confidence             9999998763   3333321  1   1246788888 664 666666788999999999886 5554321         


Q ss_pred             ----CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578         772 ----KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       772 ----~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~  805 (860)
                          ....+.++|+|+++.+++++...+.+...++...
T Consensus       201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence                1356899999999988999989999999998764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.31  E-value=0.053  Score=60.24  Aligned_cols=185  Identities=9%  Similarity=-0.018  Sum_probs=114.9

Q ss_pred             EEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCC
Q psy4578         636 LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSH  715 (860)
Q Consensus       636 ~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~  715 (860)
                      +++.+. ...|+..++.....    ..+......+..++|++.+..++.+-...+.               |..+++...
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~----~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~---------------I~~~~~~g~  144 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEY----TSLIPNLRNVVALDTEVASNRIYWSDLSQRM---------------ICSTQLDRA  144 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSC----EEEECSCSCEEEEEEETTTTEEEEEETTTTE---------------EEEEEC---
T ss_pred             eeEEec-cceeEEEccCCcce----eEeccccCcceEEeeeeccCceEEEecCCCe---------------EEEEEcccC
Confidence            444433 46888888876422    2222345678899999987777777666666               777777642


Q ss_pred             CC-CCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC-
Q psy4578         716 NV-SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-  793 (860)
Q Consensus       716 ~~-~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~-  793 (860)
                      .. ......+.........+++.+.+..++++-...+.|.+.|+..... .............++++|.+.+++++-.. 
T Consensus       145 ~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~  223 (400)
T 3p5b_L          145 HGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGT  223 (400)
T ss_dssp             ---CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE-EEEEECSSCCEEEEEEETTTTEEEEEECSS
T ss_pred             CCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce-EEEEeCCCCCcceEEEecccCeEEEEeCCC
Confidence            11 0122223323456788999986666777777788999999987654 33333344567899999977766655533 


Q ss_pred             CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         794 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       794 Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      .+.|...++......              ......-.....|++++++..|+++-+..+.|.
T Consensus       224 ~~~I~~~~~dG~~~~--------------~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~  271 (400)
T 3p5b_L          224 PAKIKKGGLNGVDIY--------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  271 (400)
T ss_dssp             SCCEEEEETTSCSCE--------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCccE--------------EEEECCCCceEEEEEEeCCCEEEEEECCCCEEE
Confidence            478888887642211              111112245678899988777777766665554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.24  E-value=0.018  Score=61.11  Aligned_cols=156  Identities=13%  Similarity=0.081  Sum_probs=91.5

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeC-CCceeeecccccc
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA-DKTQFEVEEEEEE  701 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~-Dg~i~~~~~~~~~  701 (860)
                      ...+++|++ ++.++++-..++.|..||....    ..... .....+.++++.++|+ ++++... ++.          
T Consensus        33 ~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~----~~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~----------   95 (306)
T 2p4o_A           33 FLENLASAP-DGTIFVTNHEVGEIVSITPDGN----QQIHA-TVEGKVSGLAFTSNGD-LVATGWNADSI----------   95 (306)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTTCC----EEEEE-ECSSEEEEEEECTTSC-EEEEEECTTSC----------
T ss_pred             CcceEEECC-CCCEEEEeCCCCeEEEECCCCc----eEEEE-eCCCCceeEEEcCCCc-EEEEeccCCcc----------
Confidence            456889998 6777777767899999987652    11111 2235688999999998 4554432 221          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec---------cCC
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE---------SHK  772 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~---------~h~  772 (860)
                          .|..+|..++.. ..+... ........++..+.+. ++++...+|.|..+|..++...+....         ..-
T Consensus        96 ----~v~~~d~~~g~~-~~~~~~-~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~  168 (306)
T 2p4o_A           96 ----PVVSLVKSDGTV-ETLLTL-PDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF  168 (306)
T ss_dssp             ----EEEEEECTTSCE-EEEEEC-TTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             ----eEEEEcCCCCeE-EEEEeC-CCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence                144455544421 111111 1122234555555443 465555688999999876432121111         111


Q ss_pred             CceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ...+.+  +|++++++++-...+.|..|++..
T Consensus       169 ~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          169 PAANGL--KRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             CSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred             CcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence            234556  888887777777889999999875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.20  E-value=0.0048  Score=64.02  Aligned_cols=162  Identities=14%  Similarity=0.207  Sum_probs=98.2

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      .+...+..+.++.....-..........+.++.+.+..-.++.+.+||..+.   +.+.++.... .-..+  ++++..+
T Consensus        66 ~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~---~~~~ti~~~~-eG~gl--t~dg~~L  139 (262)
T 3nol_A           66 SIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNL---RQVRSFNYDG-EGWGL--THNDQYL  139 (262)
T ss_dssp             EEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTC---CEEEEEECSS-CCCCE--EECSSCE
T ss_pred             eEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccC---cEEEEEECCC-CceEE--ecCCCEE
Confidence            3444455555555544434444443333335666666677899999999985   3344443322 11233  3567765


Q ss_pred             EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC--CC---CCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578         683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA--HT---AEVNCLSFNPYSEYILATGSADKTVALWD  757 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~--h~---~~I~sl~~sp~g~~llasgs~Dg~I~IWD  757 (860)
                      +++- .++.               |.++|..+.+   .+..+.-  ..   ..++.+.|. +|. +++..-.++.|.+.|
T Consensus       140 ~~Sd-Gs~~---------------i~~iDp~T~~---v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vID  198 (262)
T 3nol_A          140 IMSD-GTPV---------------LRFLDPESLT---PVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRID  198 (262)
T ss_dssp             EECC-SSSE---------------EEEECTTTCS---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEC
T ss_pred             EEEC-CCCe---------------EEEEcCCCCe---EEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEE
Confidence            5553 3444               9999998763   3333221  11   335567887 565 676666788999999


Q ss_pred             CCCCceeeEEeccC------------CCceEEEEEcCCCCCEEEEEE
Q psy4578         758 LRNLKLKLHSFESH------------KDEIFQVQWSPHNETILASSG  792 (860)
Q Consensus       758 l~~~~~~~~~~~~h------------~~~V~~l~fsp~g~~lL~tgs  792 (860)
                      ..+++. +..+...            ....+.|+|+|+++.+++||-
T Consensus       199 p~tG~V-~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          199 PETGKV-TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TTTCBE-EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCCCcE-EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            999886 4444321            235689999999987666663

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.19  E-value=0.0012  Score=72.69  Aligned_cols=76  Identities=5%  Similarity=-0.038  Sum_probs=57.1

Q ss_pred             EEEcCCCCcEEEEee---C-----CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE-CCCcEEEEECCC
Q psy4578         734 LSFNPYSEYILATGS---A-----DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TDRRLHVWDLSK  804 (860)
Q Consensus       734 l~~sp~g~~llasgs---~-----Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs-~Dg~I~iWdl~~  804 (860)
                      ++++|++..++++..   .     ++.+.++|..+.+. +..+... ....+++|+|+|+++++++. .++.|.++|+.+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v-v~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE-EECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE-EEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            689999997665544   2     23566999999886 5555432 25889999999998788888 699999999999


Q ss_pred             CCccccc
Q psy4578         805 IGEEQST  811 (860)
Q Consensus       805 ~~~~~~~  811 (860)
                      .+....+
T Consensus       347 ~kvv~~I  353 (368)
T 1mda_H          347 DQDQSSV  353 (368)
T ss_dssp             CEEEEEC
T ss_pred             CcEEEEE
Confidence            6654433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.13  E-value=0.011  Score=66.37  Aligned_cols=163  Identities=11%  Similarity=0.129  Sum_probs=101.0

Q ss_pred             ccceeeeEeec-cCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         621 LRLLIDVAWHL-LHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       621 ~~~V~~v~~sp-~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      ......++|+| .++.++++ ...+.|+.+|...+.    +..+.........++|+++|+.++++...++.+       
T Consensus       136 ~~~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~----v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~-------  203 (430)
T 3tc9_A          136 FGGAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEY----VSTVYSGLSKVRTICWTHEADSMIITNDQNNND-------  203 (430)
T ss_dssp             CSCCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTE----EEEEECCCSCEEEEEECTTSSEEEEEECCSCTT-------
T ss_pred             CCCCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCE----EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcc-------
Confidence            34567899997 35555554 444889999987632    223333456688999999999766666544320       


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-eeEEeccCCCceEEE
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQV  778 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~h~~~V~~l  778 (860)
                          ...+..++.. +.. .....+. ......+++++|++.+++++-..++.|..||..+... .+... +.......+
T Consensus       204 ----~~~v~~~~~~-g~~-~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-~~~~~P~gi  275 (430)
T 3tc9_A          204 ----RPNNYILTRE-SGF-KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI-QDSGWEFHI  275 (430)
T ss_dssp             ----SEEEEEEEGG-GTS-CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC-SSSSCCEEE
T ss_pred             ----cceEEEEeCC-Cce-eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc-CCCCcceeE
Confidence                0113333332 211 1111222 1234567889994444677766788999999987654 12222 122457889


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEECC
Q psy4578         779 QWSPHNETILASSGTDRRLHVWDLS  803 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWdl~  803 (860)
                      +|+|+|++++++-...++|..++..
T Consensus       276 a~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          276 QFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEcCCCCEEEEEECCCCEEEEEeCC
Confidence            9999998767676778899998765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.12  E-value=0.01  Score=70.97  Aligned_cols=58  Identities=9%  Similarity=0.038  Sum_probs=40.7

Q ss_pred             CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc
Q psy4578         750 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  810 (860)
Q Consensus       750 Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~  810 (860)
                      +|.|..||+.+++. +-....+. .+..-.+...+. +++.|+.||.++.||.++++.+..
T Consensus       454 ~g~l~A~D~~tG~~-~W~~~~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~  511 (689)
T 1yiq_A          454 SGKLIAWDPVKQQA-AWEVPYVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADTGEKLWE  511 (689)
T ss_dssp             EEEEEEEETTTTEE-EEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ceeEEEEECCCCCe-EeEccCCC-CccCccceECCC-EEEEECCCCcEEEEECCCCcccee
Confidence            47899999999886 44444332 233334555665 578899999999999999765433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.11  E-value=0.035  Score=62.43  Aligned_cols=163  Identities=9%  Similarity=0.127  Sum_probs=96.7

Q ss_pred             cceeeeEeecc--CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         622 RLLIDVAWHLL--HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       622 ~~V~~v~~sp~--~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      .....++|+|+  ++.+++ +...+.|+.+|..++.    +..+........+++|+++|+ ++++......        
T Consensus       139 ~~P~gvavd~~s~~g~Lyv-~D~~~~I~~id~~~g~----v~~~~~~~~~P~giavd~dG~-lyVad~~~~~--------  204 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYW-VGQRDAFRHVDFVNQY----VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSD--------  204 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEE-ECBTSCEEEEETTTTE----EEEECCCCSCEEEEEECTTCC-EEEEECCSCT--------
T ss_pred             CCCceEEEccccCCCEEEE-EeCCCCEEEEECCCCE----EEEeecCCCCccEEEECCCCC-EEEEcCCCCc--------
Confidence            45678999984  355444 4444899999987642    233333455689999999998 6666542211        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec-cCCCceEEE
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQV  778 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~-~h~~~V~~l  778 (860)
                         ....+..++.... . .....+. .......++++|++..++++-..++.|+.+|..++......+. +....-..+
T Consensus       205 ---~~~gv~~~~~~~~-~-~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~i  278 (433)
T 4hw6_A          205 ---TNTGIYLFTRASG-F-TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHI  278 (433)
T ss_dssp             ---TSEEEEEECGGGT-T-CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEE
T ss_pred             ---ccceEEEEECCCC-e-ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccE
Confidence               0001222332221 1 1011111 2344567889994444566666778899999886653111111 122334579


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         779 QWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      +|+|+|++++++-...++|+.++...
T Consensus       279 a~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          279 VWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             EEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            99999987666666788999988763

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.06  E-value=0.009  Score=71.36  Aligned_cols=58  Identities=16%  Similarity=0.111  Sum_probs=41.3

Q ss_pred             CcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578         751 KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       751 g~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                      |.|..||+.+++. +-... +...+.+..+...+.. ++.++.||.+++||..+++....+
T Consensus       457 g~l~A~D~~tG~~-~W~~~-~~~~~~~g~~~~~g~~-v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          457 GRLLAWDPVAQKA-AWSVE-HVSPWNGGTLTTAGNV-VFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             EEEEEEETTTTEE-EEEEE-ESSSCCCCEEEETTTE-EEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEeCCCCcE-EeecC-CCCCCcCcceEeCCCE-EEEECCCCcEEEEECCCCceeeee
Confidence            7899999999886 44443 3334444556666764 777899999999999997655433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.05  E-value=0.0023  Score=76.82  Aligned_cols=169  Identities=9%  Similarity=0.062  Sum_probs=101.3

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc-cCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS-KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~-~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      +......+.+++|++.++.++++-...+.|+.+++...... .....+.........+++.+.+..++++-...+.    
T Consensus       401 ~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~----  476 (699)
T 1n7d_A          401 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT----  476 (699)
T ss_dssp             CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSC----
T ss_pred             eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCe----
Confidence            33344567899999866666666566789999998751100 1111111112234567777656555555444455    


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-CcEEEEeCCCCceeeEEeccCCCc
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-KTVALWDLRNLKLKLHSFESHKDE  774 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g~I~IWDl~~~~~~~~~~~~h~~~  774 (860)
                                 |.++++...   .....+.........++++|.+.+++++-... +.|..+++..... .......-..
T Consensus       477 -----------I~v~d~dg~---~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~~~l~~  541 (699)
T 1n7d_A          477 -----------VSVADTKGV---KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQW  541 (699)
T ss_dssp             -----------EEEEBSSSC---CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESCSSCSS
T ss_pred             -----------EEEEecCCC---ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEeCCCCC
Confidence                       888887643   11111122223457889999777656554333 7888888765443 1122222345


Q ss_pred             eEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         775 IFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      .+.|+|+|++..|+++-+..+.|..+++..
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence            678999998877777777788999999864

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.99  E-value=0.067  Score=57.40  Aligned_cols=179  Identities=9%  Similarity=0.042  Sum_probs=110.8

Q ss_pred             CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCee
Q psy4578         643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH  722 (860)
Q Consensus       643 DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~  722 (860)
                      ...|+.+++..... .....+ .....+..+.|++.+..++.+-...+.               |..++........  .
T Consensus        12 ~~~I~~i~l~~~~~-~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~---------------I~r~~~~g~~~~~--~   72 (318)
T 3sov_A           12 RRDLRLVDATNGKE-NATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEA---------------IKRTEFNKTESVQ--N   72 (318)
T ss_dssp             EEEEEEEETTCTTS-CCEEEE-EEEEEEEEEEEEGGGTEEEEEETTTTE---------------EEEEETTSSSCCC--E
T ss_pred             cCeEEEEECCCCce-EEEEEe-cCCCccEEEEEEeCCCEEEEEECCCCc---------------EEEEEccCCCceE--E
Confidence            45799999876421 111111 112356789999877777777666666               8888877542111  1


Q ss_pred             eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE-CCCcEEEEE
Q psy4578         723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TDRRLHVWD  801 (860)
Q Consensus       723 ~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs-~Dg~I~iWd  801 (860)
                      .+...-....++++.+.+..++++-...+.|.+++...... .............++++|.+..++++-. ..+.|...+
T Consensus        73 ~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~  151 (318)
T 3sov_A           73 VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG  151 (318)
T ss_dssp             EEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred             EEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence            12222345678899886666677777788999999887543 2223344456789999997766555542 357888888


Q ss_pred             CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      +......            .+  ....-.....++|++++..|+++-+..+.|.
T Consensus       152 ~dG~~~~------------~~--~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~  191 (318)
T 3sov_A          152 MDGSSRF------------II--INSEIYWPNGLTLDYEEQKLYWADAKLNFIH  191 (318)
T ss_dssp             TTSCSCE------------EE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cCCCCeE------------EE--EECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence            7642110            01  1111234578999998777787777666654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.98  E-value=0.014  Score=59.86  Aligned_cols=161  Identities=11%  Similarity=0.101  Sum_probs=97.8

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEE
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  683 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ll  683 (860)
                      +...+...+++.....-............++.++...-.++.+.+||..+.   +.+.++.... .-..++  +++..++
T Consensus        45 v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl---~~~~ti~~~~-~Gwglt--~dg~~L~  118 (243)
T 3mbr_X           45 VRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATL---TPRARFRYPG-EGWALT--SDDSHLY  118 (243)
T ss_dssp             EEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTT---EEEEEEECSS-CCCEEE--ECSSCEE
T ss_pred             EEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcC---cEEEEEeCCC-CceEEe--eCCCEEE
Confidence            334445555555544433444333333335677777778899999999884   4444543322 223444  5677655


Q ss_pred             EEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC--CC---CCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578         684 ATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA--HT---AEVNCLSFNPYSEYILATGSADKTVALWDL  758 (860)
Q Consensus       684 asgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~--h~---~~I~sl~~sp~g~~llasgs~Dg~I~IWDl  758 (860)
                      ++- .++.               |.++|..+.+   .+.++.-  +.   ..++.+.|. +|. +++..-.+..|.+.|.
T Consensus       119 vSd-gs~~---------------l~~iDp~t~~---~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp  177 (243)
T 3mbr_X          119 MSD-GTAV---------------IRKLDPDTLQ---QVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDP  177 (243)
T ss_dssp             EEC-SSSE---------------EEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECT
T ss_pred             EEC-CCCe---------------EEEEeCCCCe---EEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCCeEEEEEC
Confidence            554 3555               9999988863   3333321  21   345667776 455 5666656789999999


Q ss_pred             CCCceeeEEecc-------------CCCceEEEEEcCCCCCEEEEEE
Q psy4578         759 RNLKLKLHSFES-------------HKDEIFQVQWSPHNETILASSG  792 (860)
Q Consensus       759 ~~~~~~~~~~~~-------------h~~~V~~l~fsp~g~~lL~tgs  792 (860)
                      ++++. +..+..             .....+.|+|+|+++.+++||-
T Consensus       178 ~tG~V-~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          178 ASGKV-VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTCBE-EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCCE-EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            99986 444331             1235689999999888776663

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.98  E-value=0.026  Score=60.30  Aligned_cols=174  Identities=11%  Similarity=0.105  Sum_probs=93.6

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC-CCCCeeEEEEcc-CCCeEEEEEeCCC-ceeeeccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA-HTAEVNCLSFNP-YSEYILATGSADK-TQFEVEEE  698 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~-h~~~V~~l~~sp-~g~~llasgs~Dg-~i~~~~~~  698 (860)
                      ..+.++++.+.++++++ +...+.|..+|..++..........+ .......+++.+ +|. ++++..... ....+...
T Consensus        80 ~~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~  157 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQI  157 (322)
T ss_dssp             CCEEEEEEETTTTEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHH
T ss_pred             CCCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCccccccccccee
Confidence            45788999863455544 44445588888765321111111111 113467899999 886 455433211 00000000


Q ss_pred             -ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-eeEEeccCCCceE
Q psy4578         699 -EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-KLHSFESHKDEIF  776 (860)
Q Consensus       699 -~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-~~~~~~~h~~~V~  776 (860)
                       ......+.|..||..++.    +..+.........++|+|+|..++++-+.++.|..||+..... ....+....+ ..
T Consensus       158 ~~~~~~~g~v~~~d~~~~~----~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~  232 (322)
T 2fp8_A          158 MDTSDKTGRLIKYDPSTKE----TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PG  232 (322)
T ss_dssp             HHHTCCCEEEEEEETTTTE----EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EE
T ss_pred             hcccCCCceEEEEeCCCCE----EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CC
Confidence             001234568888876542    1111111234567999999986566666778999999875321 0111211223 78


Q ss_pred             EEEEcCCCCCEEEEEEC----------CCcEEEEECC
Q psy4578         777 QVQWSPHNETILASSGT----------DRRLHVWDLS  803 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~----------Dg~I~iWdl~  803 (860)
                      .+++.++|. ++++...          .+.|..+|..
T Consensus       233 gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          233 NIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             EEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred             CeEECCCCC-EEEEecCcccccccCCCccEEEEECCC
Confidence            899999997 4555433          3567777753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.94  E-value=0.056  Score=57.29  Aligned_cols=194  Identities=7%  Similarity=0.035  Sum_probs=105.0

Q ss_pred             ccceeeeEeeccCCcEEEEEeCC-C-cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADD-Q-KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~D-G-~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      .....++++.+ +++++++.... + .|..++..++... .+.... .......++..+++ .++++...++.       
T Consensus        71 ~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~-~~~v~d~~~g~-------  139 (306)
T 2p4o_A           71 EGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDT-QYLTADSYRGA-------  139 (306)
T ss_dssp             SSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSS-EEEEEETTTTE-------
T ss_pred             CCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCC-cEEEEECCCCe-------
Confidence            34688999998 56666555433 2 4666676664321 111111 12223444444433 34555445665       


Q ss_pred             ccccCCCcEEEEeCCCCC--CC---CCee--eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC-Cce-eeEEec
Q psy4578         699 EEENYDQKLMIWDTRSHN--VS---KPSH--TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN-LKL-KLHSFE  769 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~--~~---~~~~--~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~-~~~-~~~~~~  769 (860)
                              |.++|..++.  ..   ....  .....-...+.+  +|++.+++++-+..+.|..||+.. +.. ....+.
T Consensus       140 --------i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~  209 (306)
T 2p4o_A          140 --------IWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV  209 (306)
T ss_dssp             --------EEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE
T ss_pred             --------EEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe
Confidence                    5555544310  00   0000  001111234556  888887777777889999999875 221 011121


Q ss_pred             cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc---cCCCeEEE
Q psy4578         770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN---PNEPWVIC  846 (860)
Q Consensus       770 ~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s---pdg~~Lla  846 (860)
                      . ......++++++|. ++++....+.|.++|... ...            .+..........++++|.   |++..|++
T Consensus       210 ~-~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G-~~~------------~~~~~~~~~~~p~~~a~~g~~~d~~~LyV  274 (306)
T 2p4o_A          210 E-QTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR-STT------------IIAQAEQGVIGSTAVAFGQTEGDCTAIYV  274 (306)
T ss_dssp             E-SCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC-CEE------------EEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred             c-cCCCCCeEECCCCC-EEEEeCCCCeEEEECCCC-CEE------------EEeecccccCCceEEEEecccCCCCEEEE
Confidence            1 13456688999996 566666678899998642 110            011111123458899999   89888887


Q ss_pred             EEeC
Q psy4578         847 SVSE  850 (860)
Q Consensus       847 sgs~  850 (860)
                      +.+.
T Consensus       275 t~~~  278 (306)
T 2p4o_A          275 VTNG  278 (306)
T ss_dssp             EECT
T ss_pred             ECCC
Confidence            7764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.89  E-value=0.081  Score=56.65  Aligned_cols=170  Identities=11%  Similarity=0.192  Sum_probs=103.1

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC----C--CCCeeEEEE---ccCCCeEEEEEeCCCceee
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA----H--TAEVNCLSF---NPYSEYILATGSADKTQFE  694 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~----h--~~~V~~l~~---sp~g~~llasgs~Dg~i~~  694 (860)
                      --+++|++.++.++++.-..|+|..|+...+.. ..+ .+.+    .  ...+..+.|   .|+++ ++++... +.  .
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~-~~--a   88 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-FNV-VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKN-AK--S   88 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-EEE-CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEE-TT--T
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-EEE-ecCCccccCCCcceeeEEEEeccCCCCc-EEEEEcc-cc--c
Confidence            347889976666666666899999999875422 111 2221    1  114689999   68865 5554331 11  0


Q ss_pred             ecc-cccccCCCcEEEEeCC---CCCCCCCeeeec--C-----------CCCCeEEEEEcCCCCcEEEEeeCC-CcEEEE
Q psy4578         695 VEE-EEEENYDQKLMIWDTR---SHNVSKPSHTVD--A-----------HTAEVNCLSFNPYSEYILATGSAD-KTVALW  756 (860)
Q Consensus       695 ~~~-~~~~~~dg~I~iwDl~---~~~~~~~~~~~~--~-----------h~~~I~sl~~sp~g~~llasgs~D-g~I~IW  756 (860)
                      +.. ......+..+..||+.   +++   .+....  .           -......++..++|+ ..++++.. +.|...
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~---~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV  164 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSK---PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARV  164 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCC---CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEE
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCC---EEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEE
Confidence            000 0111234568999998   553   222221  1           113478999999999 58888888 888888


Q ss_pred             eCCCCceeeEEec----cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         757 DLRNLKLKLHSFE----SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       757 Dl~~~~~~~~~~~----~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      +............    ......+.|+++|+|..++ ....+|.+..+|+.+
T Consensus       165 ~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Li-v~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          165 SADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLI-AFGGPRALTAFDVSK  215 (334)
T ss_dssp             CTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEE-EESSSSSEEEEECSS
T ss_pred             eCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEE-EEcCCCeEEEEcCCC
Confidence            7776532111111    1122467899999998644 444499999999884

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.85  E-value=0.14  Score=61.92  Aligned_cols=180  Identities=9%  Similarity=-0.002  Sum_probs=109.9

Q ss_pred             CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCC-CCC
Q psy4578         642 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV-SKP  720 (860)
Q Consensus       642 ~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~-~~~  720 (860)
                      ....|+..++.....    ..+......+..++|++.+..++++-...+.               |+.+++..... ...
T Consensus       402 n~~~Ir~i~l~~~~~----~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~---------------I~~~~l~g~~~~~~~  462 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEY----TSLIPNLRNVVALDTEVASNRIYWSDLSQRM---------------ICSTQLDRAHGVSSY  462 (791)
T ss_dssp             CBSSEEEECTTSCCC----EEEECSCSSEEEEEEETTTTEEEEEETTTTE---------------EEEEEC--------C
T ss_pred             cccceeEeeccCCcc----eeeecCCCceEEEeecccCCeeEEeecccee---------------EEEEeccCCCCCcce
Confidence            345678877765322    2222334567899999877777777766666               77777764211 012


Q ss_pred             eeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-CcEEE
Q psy4578         721 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHV  799 (860)
Q Consensus       721 ~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-g~I~i  799 (860)
                      ...+.........|++.+.+..|+++-...+.|.+.++..... .............|+++|.+.+|+++-... +.|..
T Consensus       463 ~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~  541 (791)
T 3m0c_C          463 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK  541 (791)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             eEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEE
Confidence            2223323455678999988877788878889999999987654 233333445689999999876666655333 77888


Q ss_pred             EECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         800 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       800 Wdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      .++......              ......-....+|++++.+..|+++-...+.|.
T Consensus       542 ~~~dG~~~~--------------~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~  583 (791)
T 3m0c_C          542 GGLNGVDIY--------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  583 (791)
T ss_dssp             EETTSCCEE--------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EecCCCceE--------------EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEE
Confidence            887642211              111122245677888876666666655555443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.85  E-value=0.016  Score=60.20  Aligned_cols=160  Identities=13%  Similarity=0.074  Sum_probs=98.0

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEE
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  683 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ll  683 (860)
                      +...+..+.++.... -..........+.++.+.+..-.++.+.+||..+.   +.+.++... ..-..++  +++..++
T Consensus        77 v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl---~~~~ti~~~-~eGwGLt--~Dg~~L~  149 (268)
T 3nok_A           77 LRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP---QRERTTRYS-GEGWGLC--YWNGKLV  149 (268)
T ss_dssp             EEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTT---EEEEEEECS-SCCCCEE--EETTEEE
T ss_pred             EEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcC---cEEEEEeCC-CceeEEe--cCCCEEE
Confidence            444455555554444 33344332233335677777778999999999984   444444332 2223444  4677655


Q ss_pred             EEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC--CC---CCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578         684 ATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA--HT---AEVNCLSFNPYSEYILATGSADKTVALWDL  758 (860)
Q Consensus       684 asgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~--h~---~~I~sl~~sp~g~~llasgs~Dg~I~IWDl  758 (860)
                      ++. .++.               |.++|..+.+   .+.++.-  +.   ..++.+.|. +|. +++..-.++.|.+.|.
T Consensus       150 vSd-Gs~~---------------l~~iDp~T~~---v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp  208 (268)
T 3nok_A          150 RSD-GGTM---------------LTFHEPDGFA---LVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDP  208 (268)
T ss_dssp             EEC-SSSE---------------EEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECT
T ss_pred             EEC-CCCE---------------EEEEcCCCCe---EEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeC
Confidence            554 3555               9999988863   3333321  22   245677887 564 6666667889999999


Q ss_pred             CCCceeeEEecc-------------CCCceEEEEEcCCCCCEEEEEE
Q psy4578         759 RNLKLKLHSFES-------------HKDEIFQVQWSPHNETILASSG  792 (860)
Q Consensus       759 ~~~~~~~~~~~~-------------h~~~V~~l~fsp~g~~lL~tgs  792 (860)
                      .+++. +..+..             -....+.|+|+|+++.+++||-
T Consensus       209 ~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          209 ATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            99886 443331             1246799999999888777663

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.76  E-value=0.21  Score=60.56  Aligned_cols=199  Identities=9%  Similarity=0.107  Sum_probs=117.1

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec-----cCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV-----DAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~-----~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      ...|.++...+ ++.+.+ |+.++-+..||..++... .....     .-....|.++...++|.  +..|+.+|     
T Consensus       214 ~~~i~~i~~d~-~g~lwi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~G-----  283 (795)
T 4a2l_A          214 TKQIQAILQQS-PTRIWV-ATEGAGLFLINPKTKEIK-NYLHSPSNPKSISSNYIRSLAMDSQNR--LWIGTFND-----  283 (795)
T ss_dssp             CCCEEEEEEEE-TTEEEE-EEBSSCEEEEETTTTEEE-EECCCTTCTTSCSCSBEEEEEECTTSC--EEEEESSC-----
T ss_pred             CCeeEEEEEcC-CCCEEE-EECCCCeEEEeCCCCeEE-EeecCCCCccccCCCeEEEEEEcCCCC--EEEEeCCh-----
Confidence            34678888775 455444 554444888998763211 11000     01235699999988887  44455556     


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeec--------CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEE
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVD--------AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS  767 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~--------~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~  767 (860)
                                 +.+||..++.    ...+.        -....|.++...++|.  +..|+.++-|..|+..+...  ..
T Consensus       284 -----------l~~~~~~~~~----~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~--~~  344 (795)
T 4a2l_A          284 -----------LNIYHEGTDS----FASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRF--KN  344 (795)
T ss_dssp             -----------EEEEETTTTE----EEEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSS--EE
T ss_pred             -----------hheEcCCCCe----EEEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccc--eE
Confidence                       7777766531    11111        1235799999999887  66788888899998765442  22


Q ss_pred             ecc-------CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccC
Q psy4578         768 FES-------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN  840 (860)
Q Consensus       768 ~~~-------h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd  840 (860)
                      +..       ....|.++...++|.  |..|+.++-|..||..+.....-.. .....     ...-....|.+++.+++
T Consensus       345 ~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~-~~~~~-----~~~l~~~~v~~i~~d~~  416 (795)
T 4a2l_A          345 IRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTL-QEDES-----ARGIGSNNIKAVYVDEK  416 (795)
T ss_dssp             ECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECC-C-----------CCSCSCEEEEEEETT
T ss_pred             EcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEec-CCCCc-----ccCCCCccEEEEEEcCC
Confidence            211       245699999998886  6678888889999977632211000 00000     00012356889998888


Q ss_pred             CCeEEEEEeCCCeEee
Q psy4578         841 EPWVICSVSEDNIMQK  856 (860)
Q Consensus       841 g~~Llasgs~Dg~IrI  856 (860)
                      |..+.++...+|..++
T Consensus       417 g~~lWigt~~~Gl~~~  432 (795)
T 4a2l_A          417 KSLVYIGTHAGGLSIL  432 (795)
T ss_dssp             TTEEEEEETTTEEEEE
T ss_pred             CCEEEEEeCcCceeEE
Confidence            8722333333565554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.73  E-value=0.24  Score=60.05  Aligned_cols=196  Identities=8%  Similarity=0.085  Sum_probs=119.6

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec----cCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV----DAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~----~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      ..|.++...+ ++. +-.|+.++-|..|+..++.. ......    .-....|.++...++|.  +..|+.++-      
T Consensus       310 ~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~G------  378 (795)
T 4a2l_A          310 RSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGG------  378 (795)
T ss_dssp             SCEEEEEECT-TSC-EEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSC------
T ss_pred             CcEEEEEEeC-CcC-EEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCC------
Confidence            4688888886 444 45577777889998765321 111100    01235689999888887  455666644      


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCeeeec---------CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSHTVD---------AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF  768 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~---------~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~  768 (860)
                               +..||..++.    ...+.         -....|.++...++|. ++..|+.++.+..||..++..  ..+
T Consensus       379 ---------l~~~~~~~~~----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~~~--~~~  442 (795)
T 4a2l_A          379 ---------LNLYNPITQR----FTSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSGQV--ENF  442 (795)
T ss_dssp             ---------EEEECTTTCC----EEEECCC------CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTTCCE--EEE
T ss_pred             ---------eEEEcCCCCc----EEEEecCCCCcccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCCcE--EEe
Confidence                     7788876542    11111         1235789999988887 356777778899999987664  233


Q ss_pred             c-----cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578         769 E-----SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW  843 (860)
Q Consensus       769 ~-----~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~  843 (860)
                      .     .....|.++...++|.  |..|+. +-+..||..+........ ...  .     ..-....|.++..+++|. 
T Consensus       443 ~~~~~~l~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~~~~~-~~~--~-----~~~~~~~i~~i~~d~~g~-  510 (795)
T 4a2l_A          443 NQRNSQLVNENVYAILPDGEGN--LWLGTL-SALVRFNPEQRSFTTIEK-EKD--G-----TPVVSKQITTLFRDSHKR-  510 (795)
T ss_dssp             CTTTSCCSCSCEEEEEECSSSC--EEEEES-SCEEEEETTTTEEEECCB-CTT--C-----CBCCCCCEEEEEECTTCC-
T ss_pred             ecCCCCcCCCeeEEEEECCCCC--EEEEec-CceeEEeCCCCeEEEccc-ccc--c-----cccCCceEEEEEECCCCC-
Confidence            2     1346799999998886  455665 458889977632211000 000  0     001235688999999998 


Q ss_pred             EEEEEeCCCeEeec
Q psy4578         844 VICSVSEDNIMQKP  857 (860)
Q Consensus       844 Llasgs~Dg~IrI~  857 (860)
                      +.+++. +|..+++
T Consensus       511 lWigt~-~Gl~~~~  523 (795)
T 4a2l_A          511 LWIGGE-EGLSVFK  523 (795)
T ss_dssp             EEEEES-SCEEEEE
T ss_pred             EEEEeC-CceEEEe
Confidence            344443 7776653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.72  E-value=0.43  Score=56.18  Aligned_cols=161  Identities=4%  Similarity=0.011  Sum_probs=108.9

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      ...+.+++|++.++.++++-..++.|..+++.....   ...+.........+++.+.+..++.+-...+.         
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~---~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~---------  103 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL---EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNR---------  103 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSCCCEEEEETTTTEEEEEETTTTE---------
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc---EEEEeCCCCCcceEEEEeCCCEEEEEECCCCE---------
Confidence            456789999987777777777889999999875321   12222222456788998877777777665565         


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEe-eCCCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG-SADKTVALWDLRNLKLKLHSFESHKDEIFQVQ  779 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasg-s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~  779 (860)
                            |.+.++....   ........-....+++++|...+++++- +..+.|...++.....  ..+...-.....++
T Consensus       104 ------I~v~~~dG~~---~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~--~~l~~~~~~P~Gla  172 (628)
T 4a0p_A          104 ------IEVSKLDGQH---RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER--TTLVPNVGRANGLT  172 (628)
T ss_dssp             ------EEEEETTSTT---CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEECSCSSEEEEE
T ss_pred             ------EEEEecCCCc---EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce--EEEECCCCCcceEE
Confidence                  8888876531   1112223345578999999766556554 2357888888876654  22223456788999


Q ss_pred             EcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         780 WSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       780 fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      +++++..+.++-...+.|...|+..
T Consensus       173 lD~~~~~LY~aD~~~~~I~~~d~dG  197 (628)
T 4a0p_A          173 IDYAKRRLYWTDLDTNLIESSNMLG  197 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EccccCEEEEEECCCCEEEEEcCCC
Confidence            9998777666666778999999875

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.69  E-value=0.11  Score=62.68  Aligned_cols=158  Identities=8%  Similarity=0.061  Sum_probs=87.1

Q ss_pred             eeeeEeeccCCcEEEEEeCC-----CcEEEEEcCCCCcccCeeecc-CCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         624 LIDVAWHLLHESLFGSVADD-----QKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~D-----G~I~IWd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      ..+++|+|++..++++ ..|     ..|.++++.++.. .....+. .......++.|+|||++++++....+       
T Consensus       223 ~~~~~WspDg~~l~y~-~~d~~~~~~~v~~~~lgt~~~-~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-------  293 (751)
T 2xe4_A          223 NGEIVWGPDHTSLFYV-TKDETLRENKVWRHVMGKLQS-EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPE-------  293 (751)
T ss_dssp             CSCCEECSSTTEEEEE-EECTTCCEEEEEEEETTSCGG-GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSS-------
T ss_pred             eeeEEEecCCCEEEEE-EECCCCCCCEEEEEECCCCch-hcEEEEecCCCceEEEEEECCCCCEEEEEecCCC-------
Confidence            4689999944444444 443     2577778766422 1112221 22345678899999998776664332       


Q ss_pred             cccccCCCcEEEEeCCCCCCCCC--eeeecCCCCCeEEEEEcCCCCcEEEEeeCC----CcEEEEeCCCCceeeEE-ecc
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKP--SHTVDAHTAEVNCLSFNPYSEYILATGSAD----KTVALWDLRNLKLKLHS-FES  770 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~--~~~~~~h~~~I~sl~~sp~g~~llasgs~D----g~I~IWDl~~~~~~~~~-~~~  770 (860)
                            ...|.++|+.++.. ..  ............++.|+. |..+++.+..+    ..|..+|+.+... ... +..
T Consensus       294 ------~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~~~li~  364 (751)
T 2xe4_A          294 ------TAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD-WSHVLVD  364 (751)
T ss_dssp             ------CEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC-CCCEEEC
T ss_pred             ------CceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc-ceeeEEC
Confidence                  23488889876521 12  222233344556666654 55456665544    3567777765321 122 223


Q ss_pred             CCC--ceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         771 HKD--EIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       771 h~~--~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      +..  .+..+.+  .+..++++...+|..++|-
T Consensus       365 ~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          365 HSEDVFMESIAV--RSNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             CCSSEEEEEEEE--CSSEEEEEEEETTEEEEEE
T ss_pred             CCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEE
Confidence            333  3444444  4667788888888655543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.65  E-value=0.044  Score=61.52  Aligned_cols=154  Identities=12%  Similarity=0.150  Sum_probs=91.5

Q ss_pred             CeeEEEEcc-CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEe
Q psy4578         669 EVNCLSFNP-YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG  747 (860)
Q Consensus       669 ~V~~l~~sp-~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasg  747 (860)
                      ....++|+| ++..++++-.. +.               |+.+|....    .+..+.........++|+++|.+++++.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~-~~---------------I~~id~~~~----~v~~~~~~~~~P~~ia~d~~G~~lyvad  197 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ-HP---------------TRLIDFEKE----YVSTVYSGLSKVRTICWTHEADSMIITN  197 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT-EE---------------EEEEETTTT----EEEEEECCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCC-Cc---------------EEEEECCCC----EEEEEecCCCCcceEEEeCCCCEEEEEe
Confidence            457788887 35554544433 44               888988764    2333333456688999999999756665


Q ss_pred             eCCC----cEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEE
Q psy4578         748 SADK----TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF  823 (860)
Q Consensus       748 s~Dg----~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~  823 (860)
                      ..++    .+..++..........+. .......++++|++..++++-..++.|..++.......            .+.
T Consensus       198 ~~~~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~------------~~~  264 (430)
T 3tc9_A          198 DQNNNDRPNNYILTRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT------------PLF  264 (430)
T ss_dssp             CCSCTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE------------EEE
T ss_pred             CCCCcccceEEEEeCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE------------EEE
Confidence            4333    233344332211112222 12345678899944455666667889999998752210            111


Q ss_pred             EecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         824 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       824 ~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .... ......++|+|+|++++++....+.|..
T Consensus       265 ~~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          265 TIQD-SGWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             ECSS-SSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EcCC-CCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence            1111 2346789999999977777776666653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.59  E-value=0.22  Score=58.55  Aligned_cols=168  Identities=9%  Similarity=0.014  Sum_probs=107.6

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      ......+...+++|++.++.++++=...+.|..+++.....  ....+...-.....+++.+.+..++.+-...+.    
T Consensus        34 ~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~--~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~----  107 (619)
T 3s94_A           34 IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNR----  107 (619)
T ss_dssp             --CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTE----
T ss_pred             EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc--eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCE----
Confidence            34445567889999986676777666678899998875311  112222223568899999988877777666666    


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee-CCCcEEEEeCCCCceeeEEeccCCCc
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS-ADKTVALWDLRNLKLKLHSFESHKDE  774 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~  774 (860)
                                 |.+.++....   ........-.....++++|.+.++++|-- ..+.|...++..... .......-..
T Consensus       108 -----------I~v~~~dG~~---~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~~  172 (619)
T 3s94_A          108 -----------IEVSNLDGSL---RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYW  172 (619)
T ss_dssp             -----------EEEEETTSCS---CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSS
T ss_pred             -----------EEEEECCCCC---EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-EEEEeCCCCC
Confidence                       8888886531   11122233445678999998776666642 246777777776543 2223334456


Q ss_pred             eEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         775 IFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      .+.+++++++..++++=+..+.|...|+..
T Consensus       173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred             CcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence            889999998777666666778899888865

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.58  E-value=0.0004  Score=76.61  Aligned_cols=107  Identities=14%  Similarity=0.039  Sum_probs=56.0

Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeC
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL  758 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl  758 (860)
                      +. .+++++.||.               |+.||..++   +.+..+..  +.+.+..+..++. ++++++.||.|+.||.
T Consensus         9 ~~-~v~~gs~dg~---------------v~a~d~~tG---~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~   66 (369)
T 2hz6_A            9 ET-LLFVSTLDGS---------------LHAVSKRTG---SIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGS   66 (369)
T ss_dssp             TT-EEEEEETTSE---------------EEEEETTTC---CEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC--
T ss_pred             CC-EEEEEcCCCE---------------EEEEECCCC---CEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEEC
Confidence            44 4778888888               999999887   44445444  4455555556676 4778889999999999


Q ss_pred             CCCceeeEEeccCCC-ceE-EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc
Q psy4578         759 RNLKLKLHSFESHKD-EIF-QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  810 (860)
Q Consensus       759 ~~~~~~~~~~~~h~~-~V~-~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~  810 (860)
                      .+++. +..+..+.. .+. +..+.. +.. +++|+.|+.++.||..+++....
T Consensus        67 ~tG~~-~w~~~~~~~~~~~~sp~~~~-~~~-v~~g~~dg~v~a~D~~tG~~~w~  117 (369)
T 2hz6_A           67 KNNEG-LTKLPFTIPELVQASPCRSS-DGI-LYMGKKQDIWYVIDLLTGEKQQT  117 (369)
T ss_dssp             ---CC-SEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-------
T ss_pred             CCCce-eeeeeccCccccccCceEec-CCE-EEEEeCCCEEEEEECCCCcEEEE
Confidence            88765 333332211 010 011112 333 66788899999999998766543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.52  E-value=0.12  Score=56.11  Aligned_cols=176  Identities=11%  Similarity=0.110  Sum_probs=97.8

Q ss_pred             CCCcEEEEEcCCCCc-ccCeeeccC-----CCCCeeEEEEcc--CCC-eEEEEEeCCCceeeecccccccCCCcEEEEeC
Q psy4578         642 DDQKLMIWDTRSHNV-SKPSHTVDA-----HTAEVNCLSFNP--YSE-YILATGSADKTQFEVEEEEEENYDQKLMIWDT  712 (860)
Q Consensus       642 ~DG~I~IWd~~~~~~-~~~~~~~~~-----h~~~V~~l~~sp--~g~-~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl  712 (860)
                      .+|.|.++|..+... ...+ .+.+     .......+.+.+  ++. +++++-...             .+..|.+|++
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~-------------~~s~ielf~~  146 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG-------------SSSTVEVFKF  146 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECST-------------TCCEEEEEEE
T ss_pred             CCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCC-------------CCCeEEEEEE
Confidence            689999999874211 1111 1222     224566777655  343 344443331             1234778777


Q ss_pred             CCCCC-CCCeeeecCC-CCCeEEEEEcCCCCcEEEEee-----------------CCCcEEEEeCCCCceeeEEeccCCC
Q psy4578         713 RSHNV-SKPSHTVDAH-TAEVNCLSFNPYSEYILATGS-----------------ADKTVALWDLRNLKLKLHSFESHKD  773 (860)
Q Consensus       713 ~~~~~-~~~~~~~~~h-~~~I~sl~~sp~g~~llasgs-----------------~Dg~I~IWDl~~~~~~~~~~~~h~~  773 (860)
                      ..... ...+..+.+. -...+.+.+.++|.+ +++..                 ..|.|.-+|..  .  +......-.
T Consensus       147 d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~--~~~~~~~l~  221 (355)
T 3sre_A          147 QEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D--VRVVAEGFD  221 (355)
T ss_dssp             ETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C--CEEEEEEES
T ss_pred             ECCCCEEEEEeccccCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCccEEEEEECC--e--EEEeecCCc
Confidence            65321 1222333322 235688999999984 55543                 12445555543  2  222222334


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEcc-CCCeEEEEEe
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWVICSVS  849 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp-dg~~Llasgs  849 (860)
                      ..+.++|+||++.++++-+..+.|..|++........        .+   .+ ...+..-.++.++ +|. +.+++.
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~--------~~---~~-~~~g~PDGi~vD~e~G~-lwva~~  285 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP--------LR---VL-SFDTLVDNISVDPVTGD-LWVGCH  285 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE--------EE---EE-ECSSEEEEEEECTTTCC-EEEEEE
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec--------CE---EE-eCCCCCceEEEeCCCCc-EEEEec
Confidence            5789999999998777777889999999874221110        01   11 1235677889999 588 455444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.50  E-value=0.16  Score=61.50  Aligned_cols=199  Identities=7%  Similarity=-0.027  Sum_probs=117.6

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeee-------ccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHT-------VDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~-------~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      ..|.++...+ ++. +-.|+.++-|..|+..+... .....       .......|.++...++|.  +..|+.++-   
T Consensus       313 ~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~G---  384 (781)
T 3v9f_A          313 ASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTF-HTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGG---  384 (781)
T ss_dssp             SCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSC-EEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSC---
T ss_pred             CeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcc-eeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCc---
Confidence            4588888876 444 45567677788888765321 11100       011235689998888776  445554433   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec---cC
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE---SH  771 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~---~h  771 (860)
                                  +..||..++...............|.++...++|.  |..|+.++.+..+|..++..  ..+.   ..
T Consensus       385 ------------l~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~  448 (781)
T 3v9f_A          385 ------------INVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKKF--QIIELEKNE  448 (781)
T ss_dssp             ------------EEEEETTEEEEECC-----CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSSCEE--EECCSTTTC
T ss_pred             ------------EEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCCCcE--EEeccCCCC
Confidence                        77777654311000000012346789999888887  55577777899999877653  2332   23


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D  851 (860)
                      ...|.++...++|.  +..|+. +-+..||..+......... ..  .      ......|.++...++|. +.++...+
T Consensus       449 ~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~~~~~~-~~--~------~~~~~~i~~i~~d~~g~-lWigt~~~  515 (781)
T 3v9f_A          449 LLDVRVFYEDKNKK--IWIGTH-AGVFVIDLASKKVIHHYDT-SN--S------QLLENFVRSIAQDSEGR-FWIGTFGG  515 (781)
T ss_dssp             CCCEEEEEECTTSE--EEEEET-TEEEEEESSSSSCCEEECT-TT--S------SCSCSCEEEEEECTTCC-EEEEESSS
T ss_pred             CCeEEEEEECCCCC--EEEEEC-CceEEEeCCCCeEEecccC-cc--c------ccccceeEEEEEcCCCC-EEEEEcCC
Confidence            46799999988886  556666 5688898776432111000 00  0      01135789999999998 45444447


Q ss_pred             CeEeec
Q psy4578         852 NIMQKP  857 (860)
Q Consensus       852 g~IrI~  857 (860)
                      |..+++
T Consensus       516 Gl~~~~  521 (781)
T 3v9f_A          516 GVGIYT  521 (781)
T ss_dssp             CEEEEC
T ss_pred             CEEEEe
Confidence            777764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.39  E-value=0.044  Score=62.30  Aligned_cols=171  Identities=14%  Similarity=0.153  Sum_probs=101.2

Q ss_pred             cceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEE-------ccCCCeEEEEEeCCCcee
Q psy4578         622 RLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF-------NPYSEYILATGSADKTQF  693 (860)
Q Consensus       622 ~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~-------sp~g~~llasgs~Dg~i~  693 (860)
                      .....|+|+|. +++++++-...+.|++.|..++........-.........++|       ++++.+++++...++.. 
T Consensus       139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~-  217 (496)
T 3kya_A          139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG-  217 (496)
T ss_dssp             CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG-
T ss_pred             CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc-
Confidence            45678999983 5666666665577899998864322111111112235899999       99999766665544210 


Q ss_pred             eecccccccCCCcEEEEeCCC-CCCCC-C-eeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC-------CCce
Q psy4578         694 EVEEEEEENYDQKLMIWDTRS-HNVSK-P-SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR-------NLKL  763 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~-~~~~~-~-~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~-------~~~~  763 (860)
                              .....|.+++... +.... . ...+.. .....+++.+|++.+++++-..++.|..+|..       ++..
T Consensus       218 --------~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~  288 (496)
T 3kya_A          218 --------DESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS  288 (496)
T ss_dssp             --------GGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred             --------ccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence                    0011255555333 11110 0 011111 12345788899777778788888999999987       4432


Q ss_pred             -------------eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECC
Q psy4578         764 -------------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  803 (860)
Q Consensus       764 -------------~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~  803 (860)
                                   .+... +.....+.++|+|+|+.++++-+..++|+.++..
T Consensus       289 ~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          289 WDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             CCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence                         11111 2234568999999998655565677889986654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.38  E-value=0.013  Score=70.08  Aligned_cols=179  Identities=9%  Similarity=-0.003  Sum_probs=101.3

Q ss_pred             CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCC-CCCe
Q psy4578         643 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV-SKPS  721 (860)
Q Consensus       643 DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~-~~~~  721 (860)
                      .+.|+..++.+....    .+......+..++|++.+..++++-...+.               |+.+++..... ....
T Consensus       385 ~~~I~~id~~~~~~~----~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~---------------I~~~~~~g~~~~~~~~  445 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNRIYWSDLSQRM---------------ICSTQLDRAHGVSSYD  445 (699)
T ss_dssp             TTC-CEECTTSCCEE----CCSCCCTTCCCCEEETTTTEEEECCTTTTS---------------BEEEESCCCCC-CCCC
T ss_pred             ccceEEEeCCCCcce----eeeccCcceEEEccccccCeEEEEecCCCe---------------EEEEecCCCCCCcceE
Confidence            357777777653321    111223456788999877776666555555               77888764100 0111


Q ss_pred             eeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-CcEEEE
Q psy4578         722 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHVW  800 (860)
Q Consensus       722 ~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-g~I~iW  800 (860)
                      ..+.........+++.+.+..++++-...+.|.+++...... .............++++|.+.+++++-... +.|..+
T Consensus       446 ~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~  524 (699)
T 1n7d_A          446 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  524 (699)
T ss_dssp             CBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred             EEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence            111111223456888866665677766778999999886653 222222234567889999776655554333 677777


Q ss_pred             ECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         801 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       801 dl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      ++......             +. ..........|+|+|++..|+++-+..+.|.
T Consensus       525 ~~dG~~~~-------------~l-~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          525 GLNGVDIY-------------SL-VTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             CSSSCCCC-------------EE-SCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             eCCCCCee-------------EE-EeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence            76532110             00 0111234567889888776777776666554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.34  E-value=0.1  Score=61.76  Aligned_cols=119  Identities=13%  Similarity=0.148  Sum_probs=69.3

Q ss_pred             eeEeeccCCcEEEEEeCCC-----------cEEEEEcCCCCcccCeeec-cCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         626 DVAWHLLHESLFGSVADDQ-----------KLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       626 ~v~~sp~~~~~lasgs~DG-----------~I~IWd~~~~~~~~~~~~~-~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      .+++.+.++.+++.|+.++           .+.+||..++.- ..+... ..+.....++++..++. +++.|+.++.  
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w-~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~--  265 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV-SDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAK--  265 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB-CCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTT--
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE-EeCcccCCCCCCccccccCCCCCC-EEEeCCCCCC--
Confidence            5566654678888887543           588999987643 222222 22334445677777777 6888875432  


Q ss_pred             eecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee-CC-----CcEEEEeCCCCce
Q psy4578         694 EVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS-AD-----KTVALWDLRNLKL  763 (860)
Q Consensus       694 ~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs-~D-----g~I~IWDl~~~~~  763 (860)
                                  .+.+||..+... ..+..+.... .-.+++..++|+ +++.|+ .+     ..+.+||..+...
T Consensus       266 ------------~v~~yd~~t~~W-~~~~~~~~~R-~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          266 ------------KTSLYDSSSDSW-IPGPDMQVAR-GYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             ------------CEEEEEGGGTEE-EECCCCSSCC-SSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ------------ceEEecCcCCce-eECCCCCccc-cccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcc
Confidence                        288888876521 1111121111 123455566777 577777 34     4688888876553

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.30  E-value=0.059  Score=64.22  Aligned_cols=87  Identities=9%  Similarity=0.119  Sum_probs=51.5

Q ss_pred             eEEEEccCCCeEEEEEeCCCceeeecccc------cccCCCcEEEEeCCCCCCCCCeeeecC--CC-------CCeEEEE
Q psy4578         671 NCLSFNPYSEYILATGSADKTQFEVEEEE------EENYDQKLMIWDTRSHNVSKPSHTVDA--HT-------AEVNCLS  735 (860)
Q Consensus       671 ~~l~~sp~g~~llasgs~Dg~i~~~~~~~------~~~~dg~I~iwDl~~~~~~~~~~~~~~--h~-------~~I~sl~  735 (860)
                      ..++++|++.. +..++.++..  |....      .....+.|..+|..++   +.+..++.  |.       .....+.
T Consensus       246 ~~~~~d~~~~~-vy~~~~~~~~--w~~~~~~~~~gd~~~~~sv~AlD~~TG---~~~W~~~~~~~d~wd~~~~~~p~l~~  319 (677)
T 1kb0_A          246 DSMTFDAELNT-MYVGTGNGSP--WSHKVRSPKGGDNLYLASIVALDPDTG---KYKWHYQETPGDNWDYTSTQPMILAD  319 (677)
T ss_dssp             SCEEEETTTTE-EEEECCCEES--SCHHHHSTTCCCCTTTTEEEEECTTTC---CEEEEEESSTTCCSCCCCCSCCEEEE
T ss_pred             cceeEcCCCCE-EEEECCCCcc--ccCCCCCccCCCCeeeEEEEEEECCCC---CEEEEEecCCCcccccccCCCcEEEe
Confidence            35788888874 6666666542  22111      1112245888888887   33333321  21       1222333


Q ss_pred             EcCCCC--cEEEEeeCCCcEEEEeCCCCce
Q psy4578         736 FNPYSE--YILATGSADKTVALWDLRNLKL  763 (860)
Q Consensus       736 ~sp~g~--~llasgs~Dg~I~IWDl~~~~~  763 (860)
                      ...+|+  .+++.++.+|.++++|.++++.
T Consensus       320 ~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~  349 (677)
T 1kb0_A          320 IKIAGKPRKVILHAPKNGFFFVLDRTNGKF  349 (677)
T ss_dssp             EEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             cccCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence            344662  3688999999999999999886

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.27  E-value=0.64  Score=54.66  Aligned_cols=178  Identities=9%  Similarity=0.056  Sum_probs=112.3

Q ss_pred             CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCe
Q psy4578         642 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPS  721 (860)
Q Consensus       642 ~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~  721 (860)
                      ....|+..++.+... .....+ ..-..+..++|++.+..++.+-..++.               |..+++....   ..
T Consensus        13 ~~~~I~~i~l~~~~~-~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~---------------I~r~~~~g~~---~~   72 (628)
T 4a0p_A           13 RRADIRRISLETNNN-NVAIPL-TGVKEASALDFDVTDNRIYWTDISLKT---------------ISRAFMNGSA---LE   72 (628)
T ss_dssp             ETTEEEEEESSCTTC-EEECCC-CSCSCEEEEEEETTTTEEEEEETTTTE---------------EEEEETTSCS---CE
T ss_pred             eCCcEEEEECCCCCc-ceEEEc-CCCCceEEEEEECCCCEEEEEECCCCe---------------EEEEECCCCC---cE
Confidence            456899999976422 111112 123467899999988877777766676               7777776431   11


Q ss_pred             eeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEE-ECCCcEEEE
Q psy4578         722 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS-GTDRRLHVW  800 (860)
Q Consensus       722 ~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tg-s~Dg~I~iW  800 (860)
                      ..+.........+++.+.+..++++-...+.|.+.++.+... .......-....+++++|....++++- +..+.|...
T Consensus        73 ~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~  151 (628)
T 4a0p_A           73 HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRA  151 (628)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEE
Confidence            122222245678888887776777777788999999987653 222223445678999999666655554 235677777


Q ss_pred             ECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         801 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       801 dl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      ++.....            ..+.   .......++++++++..|+++-...+.|.
T Consensus       152 ~~dG~~~------------~~l~---~~~~~P~GlalD~~~~~LY~aD~~~~~I~  191 (628)
T 4a0p_A          152 AMDGSER------------TTLV---PNVGRANGLTIDYAKRRLYWTDLDTNLIE  191 (628)
T ss_dssp             ETTSCSC------------EEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eCCCCce------------EEEE---CCCCCcceEEEccccCEEEEEECCCCEEE
Confidence            7664221            1111   12345678889888777777776666554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.18  E-value=0.26  Score=59.55  Aligned_cols=193  Identities=9%  Similarity=0.094  Sum_probs=112.8

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      ..|.++...+ ++. +..|+.++-+..|+..++...............|.++...++|.  +..|+.++-          
T Consensus       363 ~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~--lWigt~~~G----------  428 (781)
T 3v9f_A          363 KVVSSVCDDG-QGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN--LWFGTYLGN----------  428 (781)
T ss_dssp             SCEEEEEECT-TSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC--EEEEETTEE----------
T ss_pred             cceEEEEEcC-CCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC--EEEEeccCC----------
Confidence            4588888875 444 44566566688898765321110000012346788888887776  444555443          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeec---CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccC-----CC
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVD---AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESH-----KD  773 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~---~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h-----~~  773 (860)
                           +..+|..++.    ...+.   .....|.++...++|.  +..|+. +.+..||..+... .......     ..
T Consensus       429 -----l~~~~~~~~~----~~~~~~~~~~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~-~~~~~~~~~~~~~~  495 (781)
T 3v9f_A          429 -----ISYYNTRLKK----FQIIELEKNELLDVRVFYEDKNKK--IWIGTH-AGVFVIDLASKKV-IHHYDTSNSQLLEN  495 (781)
T ss_dssp             -----EEEECSSSCE----EEECCSTTTCCCCEEEEEECTTSE--EEEEET-TEEEEEESSSSSC-CEEECTTTSSCSCS
T ss_pred             -----EEEEcCCCCc----EEEeccCCCCCCeEEEEEECCCCC--EEEEEC-CceEEEeCCCCeE-EecccCcccccccc
Confidence                 7778776542    11111   2346789999888886  444555 5688999887654 2221111     36


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                      .|.++...++|.  +..|+.++-+..||..+.... .... .         ..-....|.++..+++|. +.+ |+.+|.
T Consensus       496 ~i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~-~~~~-~---------~~l~~~~i~~i~~d~~g~-lWi-~T~~Gl  560 (781)
T 3v9f_A          496 FVRSIAQDSEGR--FWIGTFGGGVGIYTPDMQLVR-KFNQ-Y---------EGFCSNTINQIYRSSKGQ-MWL-ATGEGL  560 (781)
T ss_dssp             CEEEEEECTTCC--EEEEESSSCEEEECTTCCEEE-EECT-T---------TTCSCSCEEEEEECTTSC-EEE-EETTEE
T ss_pred             eeEEEEEcCCCC--EEEEEcCCCEEEEeCCCCeEE-EccC-C---------CCCCCCeeEEEEECCCCC-EEE-EECCCc
Confidence            799999999887  556776555777887653211 0000 0         001235688999999988 343 334777


Q ss_pred             -Eee
Q psy4578         854 -MQK  856 (860)
Q Consensus       854 -IrI  856 (860)
                       .++
T Consensus       561 v~~~  564 (781)
T 3v9f_A          561 VCFP  564 (781)
T ss_dssp             EEES
T ss_pred             eEEE
Confidence             554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.17  E-value=0.061  Score=64.25  Aligned_cols=88  Identities=7%  Similarity=0.103  Sum_probs=51.0

Q ss_pred             EEEEccCCCeEEEEEeCCCceeeecccc----cccCCCcEEEEeCCCCCCCCCeeeecC--CC-------CCeEEEEEcC
Q psy4578         672 CLSFNPYSEYILATGSADKTQFEVEEEE----EENYDQKLMIWDTRSHNVSKPSHTVDA--HT-------AEVNCLSFNP  738 (860)
Q Consensus       672 ~l~~sp~g~~llasgs~Dg~i~~~~~~~----~~~~dg~I~iwDl~~~~~~~~~~~~~~--h~-------~~I~sl~~sp  738 (860)
                      .++++|++. ++..++.++..+......    .....+.|..||..++   +.+..++.  |.       ..........
T Consensus       239 ~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG---~~~W~~~~~~~d~wd~~~~~~~~l~d~~~  314 (689)
T 1yiq_A          239 SFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG---EYVWHYQTTPGDAWDYTATQHMILAELPI  314 (689)
T ss_dssp             CEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC---CEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred             ceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC---ceeEeeecCCcccccccCCCCcEEEeecc
Confidence            578888777 477777776421111110    0111235889999887   44443332  21       1222222223


Q ss_pred             CCC--cEEEEeeCCCcEEEEeCCCCce
Q psy4578         739 YSE--YILATGSADKTVALWDLRNLKL  763 (860)
Q Consensus       739 ~g~--~llasgs~Dg~I~IWDl~~~~~  763 (860)
                      +|.  .+++.++.+|.++++|.++++.
T Consensus       315 ~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          315 DGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             TTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCcEEEEEEEECCCCeEEEEECCCCCE
Confidence            443  2588899999999999999886

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.12  E-value=1.1  Score=52.42  Aligned_cols=162  Identities=8%  Similarity=0.048  Sum_probs=105.8

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      ...+.+++|.+.++.++++-...+.|..++......   ...+...-.....+++...+..++.+-+..+.         
T Consensus       348 l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~---~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~---------  415 (619)
T 3s94_A          348 IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS---QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDR---------  415 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSCCCEEEEETTTTEEEEEETTTTE---------
T ss_pred             cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc---EEEEECCCCCcCceEEecccCcEEEEeCCCCc---------
Confidence            356788999986677777766788999999875321   12222223466788998777777777666666         


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee-CCCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS-ADKTVALWDLRNLKLKLHSFESHKDEIFQVQ  779 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~  779 (860)
                            |.+.++....   ........-....+++++|...++++|-. ..+.|...++..... .......-...+.++
T Consensus       416 ------I~v~~~~G~~---~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~l~~P~Gla  485 (619)
T 3s94_A          416 ------IEVTRLNGTM---RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLVNTSLGWPNGLA  485 (619)
T ss_dssp             ------EEEEETTSCS---CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEE
T ss_pred             ------EEEEeCCCCe---EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEEeCCCCCCeeeE
Confidence                  8888876531   11122223456789999997555565542 246777777766543 222333446788999


Q ss_pred             EcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         780 WSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       780 fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      +++++..+.++=+..+.|..+++..
T Consensus       486 lD~~~~~LY~aD~~~~~I~~~~~dG  510 (619)
T 3s94_A          486 LDYDEGKIYWGDAKTDKIEVMNTDG  510 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEESSS
T ss_pred             EcccCCEEEEEECCCCEEEEEecCC
Confidence            9997776565555668899998865

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.10  E-value=0.77  Score=47.35  Aligned_cols=164  Identities=10%  Similarity=0.053  Sum_probs=100.4

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec------cCCCCCeeEEEEccCCCeEEEEEeCCC-c
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV------DAHTAEVNCLSFNPYSEYILATGSADK-T  691 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~------~~h~~~V~~l~~sp~g~~llasgs~Dg-~  691 (860)
                      ......-.|++.+ ++.++++.-.++.+.++++........+...      .........++|+|.++.++++.-.+. .
T Consensus        67 ~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~  145 (255)
T 3qqz_A           67 DFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIE  145 (255)
T ss_dssp             SSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEE
T ss_pred             CCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCce
Confidence            3345677888886 5666666667788999988754321111111      123455789999999987666554444 2


Q ss_pred             eeeecccccccCCCcEEEEeCCCCCCCCCeeee-------cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee
Q psy4578         692 QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV-------DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK  764 (860)
Q Consensus       692 i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~-------~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~  764 (860)
                                     |..|+-...  ...+...       ..+...+.+++++|...++++....+..+.++|.......
T Consensus       146 ---------------i~~~~g~~~--~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~  208 (255)
T 3qqz_A          146 ---------------VYKVNGLLS--SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIG  208 (255)
T ss_dssp             ---------------EEEEESTTC--SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEE
T ss_pred             ---------------EEEEccccc--CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEE
Confidence                           333331000  0011111       1133467899999988888888888899999998765332


Q ss_pred             eEEecc-C------CCceEEEEEcCCCCCEEEEEECCCcEEEEEC
Q psy4578         765 LHSFES-H------KDEIFQVQWSPHNETILASSGTDRRLHVWDL  802 (860)
Q Consensus       765 ~~~~~~-h------~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl  802 (860)
                      ...+.. .      -..--.|+|.++|+  |+..+..+.++.+.-
T Consensus       209 ~~~L~~g~~~l~~~~~qpEGia~d~~G~--lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          209 EMSLTKGSRGLSHNIKQAEGVAMDASGN--IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEECSTTGGGCSSCCCSEEEEEECTTCC--EEEEETTTEEEEEEC
T ss_pred             EEEcCCccCCcccccCCCCeeEECCCCC--EEEEcCCceEEEEEe
Confidence            333331 1      13678999999996  444577776666653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.08  E-value=0.64  Score=50.15  Aligned_cols=193  Identities=12%  Similarity=0.173  Sum_probs=109.9

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC----CCe--EEEEEeCCCceeeecccccccCCCc
Q psy4578         633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY----SEY--ILATGSADKTQFEVEEEEEENYDQK  706 (860)
Q Consensus       633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~----g~~--llasgs~Dg~i~~~~~~~~~~~dg~  706 (860)
                      ...+++.....+-+.+||+ ++   +.+..+..  +.++.+..-|.    |+.  ++++...+            ..+++
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G---~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~------------~~~n~  100 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DG---KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRS------------EGKNT  100 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TS---CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECS------------TTCCE
T ss_pred             CccEEEEEcCCCCEEEEcC-CC---cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCC------------CCCCe
Confidence            3456777778889999999 43   44555432  56666666652    221  22333322            00133


Q ss_pred             EEEEeCCCCCCCCCeeeecC------CC-CCeEEEEE--cCC-CCcEEEEeeCCCcEEEEeCCC---Cc---eeeEEecc
Q psy4578         707 LMIWDTRSHNVSKPSHTVDA------HT-AEVNCLSF--NPY-SEYILATGSADKTVALWDLRN---LK---LKLHSFES  770 (860)
Q Consensus       707 I~iwDl~~~~~~~~~~~~~~------h~-~~I~sl~~--sp~-g~~llasgs~Dg~I~IWDl~~---~~---~~~~~~~~  770 (860)
                      |.+|++....  ..+..+..      .. ..+..+|+  +|. +...+++...+|.+..|++..   +.   ..++.+..
T Consensus       101 l~vf~iDp~~--~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l  178 (355)
T 3amr_A          101 IEIYAIDGKN--GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM  178 (355)
T ss_dssp             EEEEEECTTT--CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred             EEEEEECCCC--CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC
Confidence            9999774221  12333311      11 55677777  774 443366677789999998832   21   12455553


Q ss_pred             CCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEe-cCc-cCceEEEEE--ccCCC-eEE
Q psy4578         771 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGH-TAKISDFSW--NPNEP-WVI  845 (860)
Q Consensus       771 h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~-~~h-~~~I~~i~~--spdg~-~Ll  845 (860)
                       .+.+..|...+.... |+.+-.|.-|..++......         .....+... .++ ...+..|++  .++|+ ||+
T Consensus       179 -gsq~EgcvvDd~~g~-Lyv~eEd~GIw~~da~p~~~---------~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi  247 (355)
T 3amr_A          179 -NSQTEGMAADDEYGR-LYIAEEDEAIWKFSAEPDGG---------SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM  247 (355)
T ss_dssp             -SSCEEEEEEETTTTE-EEEEETTTEEEEEECSTTSC---------SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred             -CCCcceEEEcCCCCe-EEEecccceEEEEeCCcCCC---------CCceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence             467888999987765 77888886655555443110         012233332 222 246888888  56666 788


Q ss_pred             EEEeCCCeEee
Q psy4578         846 CSVSEDNIMQK  856 (860)
Q Consensus       846 asgs~Dg~IrI  856 (860)
                      +++-.++.+.+
T Consensus       248 vSsQG~~s~~V  258 (355)
T 3amr_A          248 ASSQGNSSYAI  258 (355)
T ss_dssp             EEEGGGTEEEE
T ss_pred             EEcCCCCEEEE
Confidence            88866655543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.89  E-value=0.066  Score=60.88  Aligned_cols=167  Identities=13%  Similarity=0.153  Sum_probs=95.0

Q ss_pred             CeeEEEEcc-CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC----CCCCeEEEEE-------
Q psy4578         669 EVNCLSFNP-YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA----HTAEVNCLSF-------  736 (860)
Q Consensus       669 ~V~~l~~sp-~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~----h~~~I~sl~~-------  736 (860)
                      ....++|+| ++..|+++....+.               |++.|...+.    +..+..    .......++|       
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~---------------i~~ID~~~~~----v~~l~~~~~~~~~~p~~ia~~~~~~~~  200 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKA---------------IQLIDLKNRM----LSSPLNINTIPTNRIRSIAFNKKIEGY  200 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEE---------------EEEEETTTTE----EEEEECCTTSSCSBEEEEEECCCBTTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCe---------------EEEEECCCCE----EEEEEccCccccCCCcEEEEeeccccc
Confidence            467899998 45656666554344               8888887642    222221    1235789999       


Q ss_pred             cCCCCcEEEEeeCCCc------EEEEeCCC-Ccee----eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECC--
Q psy4578         737 NPYSEYILATGSADKT------VALWDLRN-LKLK----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS--  803 (860)
Q Consensus       737 sp~g~~llasgs~Dg~------I~IWDl~~-~~~~----~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~--  803 (860)
                      +++|.+++++...++.      |.+++... +...    ...+.. -.....++.+|++.+++++-..++.|..+|+.  
T Consensus       201 d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~  279 (496)
T 3kya_A          201 ADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDY  279 (496)
T ss_dssp             BCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHH
T ss_pred             CCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccc
Confidence            9999975655544423      66776443 1210    012211 12345678899777777777788899999987  


Q ss_pred             -----CCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         804 -----KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       804 -----~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                           +............+....+... +.......++|+|+|++++++-+..+.|+.
T Consensus       280 ~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k  336 (496)
T 3kya_A          280 FKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMR  336 (496)
T ss_dssp             HHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             cccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence                 3222000000000000112222 223446789999999977777776666653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.84  E-value=0.61  Score=49.86  Aligned_cols=190  Identities=10%  Similarity=0.055  Sum_probs=97.8

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCC-CCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRS-HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~-~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      +.+..+.+.+ ++.+++++ .+|.|  |-..+ +.....+.  ......+..+.+.+++. +++++ .+|.+        
T Consensus       122 ~~~~~i~~~~-~~~~~~~~-~~g~v--~~S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~-~~~~g-~~G~~--------  185 (327)
T 2xbg_A          122 GSPRLIKALG-NGSAEMIT-NVGAI--YRTKDSGKNWQALV--QEAIGVMRNLNRSPSGE-YVAVS-SRGSF--------  185 (327)
T ss_dssp             SCEEEEEEEE-TTEEEEEE-TTCCE--EEESSTTSSEEEEE--CSCCCCEEEEEECTTSC-EEEEE-TTSSE--------
T ss_pred             CCeEEEEEEC-CCCEEEEe-CCccE--EEEcCCCCCCEEee--cCCCcceEEEEEcCCCc-EEEEE-CCCcE--------
Confidence            4467777765 45555555 45643  33332 32222222  24456788999999877 35555 44441        


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc---CCCceEE
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQ  777 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~---h~~~V~~  777 (860)
                            .+-+|- .+.....+  -......+..+.+.+++. ++ .++.+|.+++++...+......-..   +...+.+
T Consensus       186 ------~~S~d~-gG~tW~~~--~~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~  254 (327)
T 2xbg_A          186 ------YSTWEP-GQTAWEPH--NRTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLD  254 (327)
T ss_dssp             ------EEEECT-TCSSCEEE--ECCSSSCEEEEEECTTSC-EE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEE
T ss_pred             ------EEEeCC-CCCceeEC--CCCCCCccceeEECCCCC-EE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEE
Confidence                  222221 01111222  123456788999999887 34 4556788887753323221111111   2235889


Q ss_pred             EEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         778 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       778 l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      +.+.+++.  ++.++.+|.+ .+..+.+..-....           ........+.++.|.+++. ++ .++.+|.|
T Consensus       255 v~~~~~~~--~~~~g~~g~i-~~S~DgG~tW~~~~-----------~~~~~~~~~~~v~~~~~~~-~~-~~G~~G~i  315 (327)
T 2xbg_A          255 LAYRTPNE--VWLAGGAGAL-LCSQDGGQTWQQDV-----------DVKKVPSNFYKILFFSPDQ-GF-ILGQKGIL  315 (327)
T ss_dssp             EEESSSSC--EEEEESTTCE-EEESSTTSSCEECG-----------GGTTSSSCCCEEEEEETTE-EE-EECSTTEE
T ss_pred             EEecCCCE--EEEEeCCCeE-EEeCCCCcccEEcC-----------ccCCCCCCeEEEEEECCCc-eE-EEcCCceE
Confidence            99998775  3445557776 34444332211110           0011234577888876655 44 44555554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.74  E-value=1.2  Score=47.45  Aligned_cols=192  Identities=8%  Similarity=-0.004  Sum_probs=97.6

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      ..+.+|.+.+  +..+++ +.+|.|.. ....+.....+.....+.+.+..+.+.+++. +++++ .+|.          
T Consensus        80 ~~~~~i~~~~--~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~----------  143 (327)
T 2xbg_A           80 YRFNSVSFQG--NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGA----------  143 (327)
T ss_dssp             CEEEEEEEET--TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCC----------
T ss_pred             ccEEEEEecC--CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC-EEEEe-CCcc----------
Confidence            3688898875  445554 45564433 2222333332222112345577888776665 45555 3454          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEE-EeCCCCceeeEEeccCCCceEEEEE
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL-WDLRNLKLKLHSFESHKDEIFQVQW  780 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~I-WDl~~~~~~~~~~~~h~~~V~~l~f  780 (860)
                           |.. ....+.....+  ...+...+.++.+.|++. +++++. +|.+.. +|-. +......-......+..+.+
T Consensus       144 -----v~~-S~DgG~tW~~~--~~~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~  212 (327)
T 2xbg_A          144 -----IYR-TKDSGKNWQAL--VQEAIGVMRNLNRSPSGE-YVAVSS-RGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGF  212 (327)
T ss_dssp             -----EEE-ESSTTSSEEEE--ECSCCCCEEEEEECTTSC-EEEEET-TSSEEEEECTT-CSSCEEEECCSSSCEEEEEE
T ss_pred             -----EEE-EcCCCCCCEEe--ecCCCcceEEEEEcCCCc-EEEEEC-CCcEEEEeCCC-CCceeECCCCCCCccceeEE
Confidence                 211 11112111111  123455788999999887 465554 455443 4421 22111122345567889999


Q ss_pred             cCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         781 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       781 sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      .+++.  ++.++.+|.+++.+...+..-.....   .  .     ..+...+.++++.+++. +++++. ++.+
T Consensus       213 ~~~g~--~~~~~~~G~~~~s~~D~G~tW~~~~~---~--~-----~~~~~~~~~v~~~~~~~-~~~~g~-~g~i  272 (327)
T 2xbg_A          213 TPDGR--LWMIVNGGKIAFSDPDNSENWGELLS---P--L-----RRNSVGFLDLAYRTPNE-VWLAGG-AGAL  272 (327)
T ss_dssp             CTTSC--EEEEETTTEEEEEETTEEEEECCCBC---T--T-----SSCCSCEEEEEESSSSC-EEEEES-TTCE
T ss_pred             CCCCC--EEEEeCCceEEEecCCCCCeeEeccC---C--c-----ccCCcceEEEEecCCCE-EEEEeC-CCeE
Confidence            99886  45666788887764221111111000   0  0     01123578888988777 455544 4444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.63  E-value=0.62  Score=52.12  Aligned_cols=222  Identities=7%  Similarity=0.011  Sum_probs=113.0

Q ss_pred             hhhhhhhhhcccceeeeEeeccCCcEEEEEeCC---Cc-EEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEE
Q psy4578         611 RAQICQLLDKLRLLIDVAWHLLHESLFGSVADD---QK-LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG  686 (860)
Q Consensus       611 ~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~D---G~-I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasg  686 (860)
                      ...+..+........+++|++ +++++++....   .. +...+...+ . .....+. .......++++|++..++++.
T Consensus       171 ~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~-~-~~~~~~~-~~~~P~giavd~~~G~lyv~d  246 (433)
T 4hw6_A          171 NQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG-F-TERLSLC-NARGAKTCAVHPQNGKIYYTR  246 (433)
T ss_dssp             TTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT-T-CCEEEEE-ECSSBCCCEECTTTCCEEECB
T ss_pred             CCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC-e-ecccccc-ccCCCCEEEEeCCCCeEEEEE
Confidence            344444444556688999998 55555554321   12 233332221 1 1001111 223456788888444455555


Q ss_pred             eCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCC--Cce-
Q psy4578         687 SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN--LKL-  763 (860)
Q Consensus       687 s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~--~~~-  763 (860)
                      ..++.               |+.+|..++.....+... +....-..++|+|++.+++++-...+.|+.+|...  +.. 
T Consensus       247 ~~~~~---------------V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~  310 (433)
T 4hw6_A          247 YHHAM---------------ISSYDPATGTLTEEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLA  310 (433)
T ss_dssp             TTCSE---------------EEEECTTTCCEEEEEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBC
T ss_pred             CCCCE---------------EEEEECCCCeEEEEEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccC
Confidence            45555               777777654210111111 11223357999999987677777788999988653  211 


Q ss_pred             eeEEeccC---------------CCceEEEEE---------cCCCCCEEEEEECCCcEEEEECCCCCcccccccccC--C
Q psy4578         764 KLHSFESH---------------KDEIFQVQW---------SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED--G  817 (860)
Q Consensus       764 ~~~~~~~h---------------~~~V~~l~f---------sp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~--~  817 (860)
                      ....+.+.               -.....+++         .++|. ++++-...++|+.++.. + ....+.....  .
T Consensus       311 ~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~-G-~v~t~~G~g~~~~  387 (433)
T 4hw6_A          311 VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPE-G-RVTTYAGRGNSRE  387 (433)
T ss_dssp             CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECTT-S-EEEEEECCCTTCS
T ss_pred             cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECCC-C-CEEEEEeCCCCCc
Confidence            01122111               123667888         66665 45565667889888742 2 1111111000  0


Q ss_pred             CCccEE--EecCccCceEEEEEc-cCCCeEEEEEeCCCeEee
Q psy4578         818 PPELLF--IHGGHTAKISDFSWN-PNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       818 ~~~~i~--~~~~h~~~I~~i~~s-pdg~~Llasgs~Dg~IrI  856 (860)
                      ....-.  .....-....+|+++ ++|. |+++-..++.|+.
T Consensus       388 ~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~~n~rIr~  428 (433)
T 4hw6_A          388 WGYVDGELRSQALFNHPTSIAYDMKRKC-FYIGDCDNHRVRK  428 (433)
T ss_dssp             SCCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEGGGTEEEE
T ss_pred             cccCCCccccccEeCCCcEEEEECCCCE-EEEEeCCCCEEEE
Confidence            000000  000112346789999 5555 7777777777763

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.63  E-value=0.91  Score=50.07  Aligned_cols=154  Identities=10%  Similarity=0.136  Sum_probs=88.0

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC--CCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc---cc-----
Q psy4578         633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA--HTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE---EN-----  702 (860)
Q Consensus       633 ~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~--h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~---~~-----  702 (860)
                      ++.-++.+- ++.||.-++..+...+.+.. ..  .-..+..+..+|+|.+ +|..+..+ |.+..+-..   ..     
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~-~~~i~f~~i~qlvlSpsG~l-LAl~g~~~-V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNF-SRHLVLDDTFHVISSTSGDL-LCLFNDNE-IFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEEC-TTTCCCCTTCEEEECTTSSE-EEEECSSE-EEEEECCTTCSCCCCHHHH
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEec-CcccccCceeEEEECCCCCE-EEEecCCe-EEEEEecCccccCcccccc
Confidence            444444433 46788888875432222222 11  1236788999999996 45444333 222222211   00     


Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCc--EEEEeeCCCcEEEEeCCCCc-eeeEEec---------c
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY--ILATGSADKTVALWDLRNLK-LKLHSFE---------S  770 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~--llasgs~Dg~I~IWDl~~~~-~~~~~~~---------~  770 (860)
                      ..-+++-|.+...+        ......|..+.|||-+..  .|++=..|+.|++||+.... .+. .+.         .
T Consensus       107 ~~~q~~ty~l~~~~--------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~  177 (452)
T 3pbp_A          107 DAFQIFHYSIDEEE--------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDA  177 (452)
T ss_dssp             HTTEEEEEEGGGCC----------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCS
T ss_pred             cccceeEEEcCCcc--------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCc
Confidence            01123444443210        113578999999996532  47788899999999998632 222 222         2


Q ss_pred             CCCceEEEEEcCCCCCEEEEEE--CCCcEEEE
Q psy4578         771 HKDEIFQVQWSPHNETILASSG--TDRRLHVW  800 (860)
Q Consensus       771 h~~~V~~l~fsp~g~~lL~tgs--~Dg~I~iW  800 (860)
                      ....|.+++|.++|-. |...+  .+|.|+-.
T Consensus       178 ~~~ev~S~~Fg~~~lT-LYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          178 RVNDITDLEFSKDGLT-LYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SCCCEEEEEECTTSSC-EEEEECTTSCEEEEE
T ss_pred             ccceEEEEEEcCCCcE-EEEEecCCCCCEEEE
Confidence            3357889999997765 66655  77888764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.56  E-value=0.17  Score=54.87  Aligned_cols=144  Identities=10%  Similarity=-0.014  Sum_probs=81.3

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC--C-----CeeEEEEcc--CCCeEEEEEeCCCceeeecccccccCC
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT--A-----EVNCLSFNP--YSEYILATGSADKTQFEVEEEEEENYD  704 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~--~-----~V~~l~~sp--~g~~llasgs~Dg~i~~~~~~~~~~~d  704 (860)
                      +..++.++.+|.+..+|..+++.   ........  +     .+..+.-.|  .+.. +..++.++.             
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-v~~~~~~g~-------------  250 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQM---IWQQRISQATGSTEIDRLSDVDTTPVVVNGV-VFALAYNGN-------------  250 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCE---EEEEECCC-----------CCCCCCEEETTE-EEEECTTSC-------------
T ss_pred             CCEEEEEcCCCEEEEEECCCCcE---EEEEecccCCCCcccccccccCCCcEEECCE-EEEEecCcE-------------
Confidence            34567788899999999988643   22211110  0     000000011  1333 555666666             


Q ss_pred             CcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec-cCCCceEEEEEcCC
Q psy4578         705 QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPH  783 (860)
Q Consensus       705 g~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~-~h~~~V~~l~fsp~  783 (860)
                        +..+|..++   +.+....  .....++...  +.. +..++.+|.+..+|..+++. ..... .....+......  
T Consensus       251 --l~~~d~~tG---~~~w~~~--~~~~~~~~~~--~~~-l~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~--  317 (376)
T 3q7m_A          251 --LTALDLRSG---QIMWKRE--LGSVNDFIVD--GNR-IYLVDQNDRVMALTIDGGVT-LWTQSDLLHRLLTSPVLY--  317 (376)
T ss_dssp             --EEEEETTTC---CEEEEEC--CCCEEEEEEE--TTE-EEEEETTCCEEEEETTTCCE-EEEECTTTTSCCCCCEEE--
T ss_pred             --EEEEECCCC---cEEeecc--CCCCCCceEE--CCE-EEEEcCCCeEEEEECCCCcE-EEeecccCCCcccCCEEE--
Confidence              888888776   3333322  2234444443  443 66778899999999998876 43333 112222222222  


Q ss_pred             CCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         784 NETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       784 g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      +.. ++.++.+|.++.+|..+++..
T Consensus       318 ~~~-l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          318 NGN-LVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             TTE-EEEECTTSEEEEEETTTCCEE
T ss_pred             CCE-EEEEeCCCeEEEEECCCCcEE
Confidence            333 778889999999999886543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.49  E-value=0.25  Score=58.73  Aligned_cols=59  Identities=10%  Similarity=0.053  Sum_probs=39.5

Q ss_pred             CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578         750 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       750 Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                      +|.|..||..+++. +-....+ .......+...+. +++.++.||.++.||.++++.....
T Consensus       437 ~g~l~A~D~~tG~~-~W~~~~~-~~~~~~~~~t~gg-~vf~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          437 SGALLAWDPVKQKA-AWKVPYP-THWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             EEEEEEEETTTTEE-EEEEEES-SSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cceEEEEeCCCCcE-EEEccCC-CCCcCceeEeCCC-EEEEECCcccchhhhhhcChhheEe
Confidence            48899999999886 3333322 2223333444565 4778899999999999987655433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.22  E-value=0.38  Score=51.49  Aligned_cols=164  Identities=10%  Similarity=0.118  Sum_probs=95.7

Q ss_pred             CCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC----C--CCCeEEEEE---
Q psy4578         666 HTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA----H--TAEVNCLSF---  736 (860)
Q Consensus       666 h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~----h--~~~I~sl~~---  736 (860)
                      ...-..++.|++....++++.-..++               |..||...+.. ..+ .+.+    .  ...+.++.|   
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~---------------V~~~~~~~~~~-~~~-~~~~~s~~g~~~~~~sGl~~~~~   73 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGR---------------IEVYNPKTQSH-FNV-VIDGASSNGDGEQQMSGLSLLTH   73 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTE---------------EEEECTTTCCE-EEE-CCTTTCCSSCCSEEEEEEEESSS
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCE---------------EEEEcCCCCeE-EEE-ecCCccccCCCcceeeEEEEecc
Confidence            34445678998876655555557787               88887764311 111 2221    1  113579999   


Q ss_pred             cCCCCcEEEEee-------------CCCcEEEEeCC---CCcee-eEEecc-----------CCCceEEEEEcCCCCCEE
Q psy4578         737 NPYSEYILATGS-------------ADKTVALWDLR---NLKLK-LHSFES-----------HKDEIFQVQWSPHNETIL  788 (860)
Q Consensus       737 sp~g~~llasgs-------------~Dg~I~IWDl~---~~~~~-~~~~~~-----------h~~~V~~l~fsp~g~~lL  788 (860)
                      .|++. ++++..             .+..+..||+.   +++.. ...+..           -......++..++|+. .
T Consensus        74 D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna-Y  151 (334)
T 2p9w_A           74 DNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS-Y  151 (334)
T ss_dssp             SSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE-E
T ss_pred             CCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE-E
Confidence            68866 565433             26779999998   55541 222221           1134889999999984 7


Q ss_pred             EEEECC-CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEeec
Q psy4578         789 ASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQKP  857 (860)
Q Consensus       789 ~tgs~D-g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI~  857 (860)
                      ++++.. +.|..++.... ....+... ..       ........+.|+++|+|..|++..+.....+++
T Consensus       152 Vt~s~~~~~I~rV~pdG~-~~~~~~~~-~~-------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD  212 (334)
T 2p9w_A          152 VAFALGMPAIARVSADGK-TVSTFAWE-SG-------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD  212 (334)
T ss_dssp             EEEEESSCEEEEECTTSC-CEEEEEEC-CC-------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred             EeCCCCCCeEEEEeCCCC-EEeeeeec-CC-------CcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence            788877 77776665532 11111000 00       011123467899999999888777744444443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=94.84  E-value=0.25  Score=53.54  Aligned_cols=136  Identities=10%  Similarity=0.064  Sum_probs=79.9

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR  713 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~  713 (860)
                      +..++.++.+|.+..+|..+++.   +....  .....++...  +.. +.+++.++.               +..+|..
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~---~w~~~--~~~~~~~~~~--~~~-l~~~~~~g~---------------l~~~d~~  295 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQI---MWKRE--LGSVNDFIVD--GNR-IYLVDQNDR---------------VMALTID  295 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCE---EEEEC--CCCEEEEEEE--TTE-EEEEETTCC---------------EEEEETT
T ss_pred             CCEEEEEecCcEEEEEECCCCcE---Eeecc--CCCCCCceEE--CCE-EEEEcCCCe---------------EEEEECC
Confidence            45667778899999999988643   22221  2233444443  444 556666776               8888887


Q ss_pred             CCCCCCCeeeecC-CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE
Q psy4578         714 SHNVSKPSHTVDA-HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG  792 (860)
Q Consensus       714 ~~~~~~~~~~~~~-h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs  792 (860)
                      ++   +.+..... ....+......  +. .++.++.+|.+.++|..+++. +.........+.+.....++ . |+.++
T Consensus       296 tG---~~~w~~~~~~~~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~tG~~-~~~~~~~~~~~~~~~~~~~~-~-l~v~~  366 (376)
T 3q7m_A          296 GG---VTLWTQSDLLHRLLTSPVLY--NG-NLVVGDSEGYLHWINVEDGRF-VAQQKVDSSGFQTEPVAADG-K-LLIQA  366 (376)
T ss_dssp             TC---CEEEEECTTTTSCCCCCEEE--TT-EEEEECTTSEEEEEETTTCCE-EEEEECCTTCBCSCCEEETT-E-EEEEB
T ss_pred             CC---cEEEeecccCCCcccCCEEE--CC-EEEEEeCCCeEEEEECCCCcE-EEEEecCCCcceeCCEEECC-E-EEEEe
Confidence            76   33333221 11222222232  34 377888899999999999886 44444322333221111234 3 67888


Q ss_pred             CCCcEEEEE
Q psy4578         793 TDRRLHVWD  801 (860)
Q Consensus       793 ~Dg~I~iWd  801 (860)
                      .+|.|+.|+
T Consensus       367 ~~G~l~~~~  375 (376)
T 3q7m_A          367 KDGTVYSIT  375 (376)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCEEEEEe
Confidence            999999987

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=94.68  E-value=0.53  Score=54.73  Aligned_cols=59  Identities=14%  Similarity=-0.060  Sum_probs=37.4

Q ss_pred             CCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc
Q psy4578         749 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  810 (860)
Q Consensus       749 ~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~  810 (860)
                      .+|.|..||..+++. +-.+.. ...+.+..+...+.. ++.++.||.++.||.++++....
T Consensus       442 ~~g~l~a~D~~tG~~-~W~~~~-~~~~~~~~~~t~gg~-v~~g~~dg~l~a~D~~tG~~lw~  500 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKA-KWTKWE-KFAAWGGTLYTKGGL-VWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             CCEEEEEECTTTCCE-EEEEEE-SSCCCSBCEEETTTE-EEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCCeEEEEECCCCCE-EEEecC-CCCccceeEEECCCE-EEEEcCCCeEEEEECCCCCEEEE
Confidence            357899999998876 333332 122222222233443 66788999999999998766543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=93.94  E-value=2.2  Score=49.54  Aligned_cols=59  Identities=10%  Similarity=0.054  Sum_probs=37.1

Q ss_pred             CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578         750 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       750 Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                      +|.|..||+.+++. +-..... ..+..-.....+. +++.|+.||.++.||.++++...+.
T Consensus       465 ~G~l~A~D~~tG~~-~W~~~~~-~~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          465 VGSLRAMDPVSGKV-VWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             SEEEEEECTTTCCE-EEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cceEEEEECCCCCE-EEEecCC-CCCcccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEe
Confidence            68899999998876 3333321 1111111112344 4677999999999999997665443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.81  E-value=4.1  Score=44.92  Aligned_cols=140  Identities=11%  Similarity=0.166  Sum_probs=84.7

Q ss_pred             EEEEeCCCCCCCCCeeeecCC----CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-----------eeEEecc-
Q psy4578         707 LMIWDTRSHNVSKPSHTVDAH----TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-----------KLHSFES-  770 (860)
Q Consensus       707 I~iwDl~~~~~~~~~~~~~~h----~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-----------~~~~~~~-  770 (860)
                      ||.-++...   ...+.+...    -..|..+..+|+|.+ +|..+ +..|.|-.+..+..           ..+.+.- 
T Consensus        43 iR~~~i~~~---~~Yk~L~~~~~i~f~~i~qlvlSpsG~l-LAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           43 IRWYNVLTD---SLYHSLNFSRHLVLDDTFHVISSTSGDL-LCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             EEEEETTTC---SSCEEEECTTTCCCCTTCEEEECTTSSE-EEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             EEEEECCCC---CcceEEecCcccccCceeEEEECCCCCE-EEEec-CCeEEEEEecCccccCcccccccccceeEEEcC
Confidence            776677643   223333222    236788999999995 55543 45788888763221           1122221 


Q ss_pred             -----CCCceEEEEEcCCCCC--EEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578         771 -----HKDEIFQVQWSPHNET--ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW  843 (860)
Q Consensus       771 -----h~~~V~~l~fsp~g~~--lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~  843 (860)
                           ...+|..+.|+|-|..  -|++-..|+.|++||+.........-.   . ....+........|.+++|..+|-.
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~---k-~~~~fg~d~~~~ev~S~~Fg~~~lT  193 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLN---K-PNNSFGLDARVNDITDLEFSKDGLT  193 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEES---C-CCSEEESCSSCCCEEEEEECTTSSC
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchh---c-cccccCCCcccceEEEEEEcCCCcE
Confidence                 2567999999997542  588899999999999997322111000   0 0112233344578999999998876


Q ss_pred             EEEEE-eCCCeEe
Q psy4578         844 VICSV-SEDNIMQ  855 (860)
Q Consensus       844 Llasg-s~Dg~Ir  855 (860)
                      |.+.. +.+|-|.
T Consensus       194 LYvl~~t~~GDIY  206 (452)
T 3pbp_A          194 LYCLNTTEGGDIF  206 (452)
T ss_dssp             EEEEECTTSCEEE
T ss_pred             EEEEecCCCCCEE
Confidence            55433 3555554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.53  E-value=3  Score=43.27  Aligned_cols=154  Identities=10%  Similarity=0.121  Sum_probs=78.0

Q ss_pred             CCcEEEEEeCC-----CcEEEEEcCCCCc--ccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCC
Q psy4578         633 HESLFGSVADD-----QKLMIWDTRSHNV--SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQ  705 (860)
Q Consensus       633 ~~~~lasgs~D-----G~I~IWd~~~~~~--~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg  705 (860)
                      ++.+++.|+.+     ..+.+||..+...  ...+..+........++.+   +..+++.|+.++.          ....
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~----------~~~~  128 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGS----------RRHT  128 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSS----------CBCC
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCC----------cccc
Confidence            56777777755     3588999877531  1222222111122222222   3346777766543          1234


Q ss_pred             cEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCceeeE-EeccCCCceEEEE
Q psy4578         706 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKLKLH-SFESHKDEIFQVQ  779 (860)
Q Consensus       706 ~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~~~~-~~~~h~~~V~~l~  779 (860)
                      .+.+||..+... ..+..+........++.+  ++. +++.|+.+     ..+.+||..+...... .+........++.
T Consensus       129 ~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  204 (301)
T 2vpj_A          129 SMERYDPNIDQW-SMLGDMQTAREGAGLVVA--SGV-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL  204 (301)
T ss_dssp             EEEEEETTTTEE-EEEEECSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             eEEEEcCCCCeE-EECCCCCCCcccceEEEE--CCE-EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE
Confidence            588899876532 222222211222223333  444 67777754     4588999988765211 1111111122222


Q ss_pred             EcCCCCCEEEEEECC-----CcEEEEECCCCC
Q psy4578         780 WSPHNETILASSGTD-----RRLHVWDLSKIG  806 (860)
Q Consensus       780 fsp~g~~lL~tgs~D-----g~I~iWdl~~~~  806 (860)
                      +  ++ .+++.||.+     ..+.+||+.+..
T Consensus       205 ~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          205 L--ND-HIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             E--TT-EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             E--CC-EEEEEeCCCCCcccceEEEEeCCCCc
Confidence            2  34 467777754     468899987743

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=93.42  E-value=0.53  Score=55.81  Aligned_cols=88  Identities=14%  Similarity=0.229  Sum_probs=49.9

Q ss_pred             EEEEccCCCeEEEEEeCCCceeeecccc----cccCCCcEEEEeCCCCCCCCCeeeecC--CC-------CCeEEEEEcC
Q psy4578         672 CLSFNPYSEYILATGSADKTQFEVEEEE----EENYDQKLMIWDTRSHNVSKPSHTVDA--HT-------AEVNCLSFNP  738 (860)
Q Consensus       672 ~l~~sp~g~~llasgs~Dg~i~~~~~~~----~~~~dg~I~iwDl~~~~~~~~~~~~~~--h~-------~~I~sl~~sp  738 (860)
                      .+++.|++. ++..++.++..+......    .....+.|..+|..++   +.+..++.  |.       ..........
T Consensus       234 ~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG---~~~W~~~~~~~~~wd~~~~~~~~~~d~~~  309 (668)
T 1kv9_A          234 SMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG---KLAWHYQVTPGDSWDFTATQQITLAELNI  309 (668)
T ss_dssp             CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC---CEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred             ceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC---ceeeEeecCCCccccccCCCCcEEEEecc
Confidence            467888776 466776665421111110    0112235888888887   33333322  22       2222233333


Q ss_pred             CCC--cEEEEeeCCCcEEEEeCCCCce
Q psy4578         739 YSE--YILATGSADKTVALWDLRNLKL  763 (860)
Q Consensus       739 ~g~--~llasgs~Dg~I~IWDl~~~~~  763 (860)
                      +|.  .+++.++.+|.++++|..+++.
T Consensus       310 ~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          310 DGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             TTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCcEEEEEEEECCCCEEEEEECCCCCE
Confidence            554  2488899999999999999886

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.23  E-value=12  Score=41.33  Aligned_cols=188  Identities=12%  Similarity=0.176  Sum_probs=115.1

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC----CCCeeEEEEccC
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH----TAEVNCLSFNPY  678 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h----~~~V~~l~~sp~  678 (860)
                      .+.+.|.........+.-..+|.-=.|-.  .+.++-.+ +..|.-|++...  ..+...+..|    ...|.....+++
T Consensus        87 ~lQiFnle~K~klks~~~~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~--s~P~kvFdR~~~L~~~QIInY~~d~~  161 (494)
T 1bpo_A           87 TLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAK  161 (494)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSS--CCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred             eEEEEchHHhhhhcceecCCCceEEEecC--CCeEEEEc-CCeeEEecccCC--CCchhheecchhcccceEEEEEECCC
Confidence            34455555555555555556777777874  45555544 458999999753  3455555444    356777788899


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC--CCcEEEEeeCC---CcE
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSAD---KTV  753 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~--g~~llasgs~D---g~I  753 (860)
                      .++++++|-..+.         +.-.|.+.+|..+.    +....+.||.+....+...-+  ...+++-+...   +.+
T Consensus       162 ~kW~~l~GI~~~~---------~~v~G~mQLYS~er----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL  228 (494)
T 1bpo_A          162 QKWLLLTGISAQQ---------NRVVGAMQLYSVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  228 (494)
T ss_dssp             SSEEEEEEEEEET---------TEEEEEEEEEESTT----CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred             CCeEEEEeecccC---------CcccceEEEeeccc----cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence            9998877742111         12346799999886    345667788665544444321  12345555443   789


Q ss_pred             EEEeCCCC---ceee--EE----ec--cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578         754 ALWDLRNL---KLKL--HS----FE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  809 (860)
Q Consensus       754 ~IWDl~~~---~~~~--~~----~~--~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~  809 (860)
                      +|-++...   ..+.  ..    +.  ....-..++..++.-. ++..-+.-|.|++||+.++.+..
T Consensus       229 hi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~  294 (494)
T 1bpo_A          229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIY  294 (494)
T ss_dssp             EEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccceeee
Confidence            99998543   1100  00    11  1233445677777665 57788899999999999976653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.20  E-value=5.9  Score=42.55  Aligned_cols=215  Identities=8%  Similarity=0.030  Sum_probs=102.2

Q ss_pred             ccceeeeEeecc---CCcEEEEEeCC-----CcEEEEEcCCCCcc--c-Ceeecc---CCCCCeeEEEEccCCCeEEEEE
Q psy4578         621 LRLLIDVAWHLL---HESLFGSVADD-----QKLMIWDTRSHNVS--K-PSHTVD---AHTAEVNCLSFNPYSEYILATG  686 (860)
Q Consensus       621 ~~~V~~v~~sp~---~~~~lasgs~D-----G~I~IWd~~~~~~~--~-~~~~~~---~h~~~V~~l~~sp~g~~llasg  686 (860)
                      ......++|+|+   ++.++++-+.+     +.|..|+...+...  + .+..+.   +.......++|.|+|. ++++.
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~  152 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTT  152 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEEC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEE
Confidence            356789999984   35555554433     57888887643110  1 111122   1112346899999995 55554


Q ss_pred             eCCCceeeecccccccCCCcEEEEeCCCCC-----------CCCCeeeecCCCCCeEEEEEcC-CCCcEEEEeeCCCcE-
Q psy4578         687 SADKTQFEVEEEEEENYDQKLMIWDTRSHN-----------VSKPSHTVDAHTAEVNCLSFNP-YSEYILATGSADKTV-  753 (860)
Q Consensus       687 s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~-----------~~~~~~~~~~h~~~I~sl~~sp-~g~~llasgs~Dg~I-  753 (860)
                      +..+.. . .........|.|.-++....-           ....+. ..++ .....++|+| ++. ++++-...+.+ 
T Consensus       153 G~~~~~-~-~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~-a~G~-rnp~g~a~d~~~g~-l~v~d~g~~~~~  227 (352)
T 2ism_A          153 GEVYER-E-LAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVY-SLGH-RNPQGLAWHPKTGE-LFSSEHGPSGEQ  227 (352)
T ss_dssp             CCTTCG-G-GGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEE-EECC-SEECCCEECTTTCC-EEEEEECC----
T ss_pred             CCCCCC-c-cccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEE-EEcC-CCcccEEEECCCCC-EEEEEcCCCCCC
Confidence            433321 0 000011233556666654310           001111 1223 3356789999 555 45443322221 


Q ss_pred             -----EEEeCCCCc-----------------eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578         754 -----ALWDLRNLK-----------------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       754 -----~IWDl~~~~-----------------~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                           .|.-+..+.                 .++..+. +......++| .+|. ++++.-..+.|...++.........
T Consensus       228 ~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~-l~v~~~~~~~v~~v~~~~~~~~~~~  304 (352)
T 2ism_A          228 GYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGD-LYVAGLRGQALLRLVLEGERGRWRV  304 (352)
T ss_dssp             --CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTE-EEEEETTTTEEEEEEEEEETTEEEE
T ss_pred             CCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCE-EEEEECCCCEEEEEEECCCCcceee
Confidence                 122222221                 1233332 2334567777 4564 4555556677777776542210000


Q ss_pred             ccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         812 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       812 ~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                             ......+ .-...+.++++.|||...+++.+.+|
T Consensus       305 -------~~~~~~~-~~~~rp~~v~~~pdG~lyv~~~~~~g  337 (352)
T 2ism_A          305 -------LRVETAL-SGFGRLREVQVGPDGALYVTTSNRDG  337 (352)
T ss_dssp             -------EEEEEEE-ESSCCEEEEEECTTSCEEEEECSTTT
T ss_pred             -------cchheec-ccCCCeeEEEECCCCcEEEEEeCCCC
Confidence                   0001111 12367899999999985444444443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.80  E-value=2.5  Score=45.81  Aligned_cols=135  Identities=8%  Similarity=0.086  Sum_probs=73.8

Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecC-----CCCCeEEEEEcC--CCC-cEEEEeeC--CCcEEEEeCCCCce---eeEEec
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDA-----HTAEVNCLSFNP--YSE-YILATGSA--DKTVALWDLRNLKL---KLHSFE  769 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~-----h~~~I~sl~~sp--~g~-~llasgs~--Dg~I~IWDl~~~~~---~~~~~~  769 (860)
                      .+|.|.++|..+.........+.+     .......+.+.+  ++. +++++-..  +++|.+|++.....   .+..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            456699999874321111112222     223566777765  343 45555444  56788887765322   123333


Q ss_pred             cC-CCceEEEEEcCCCCCEEEEEE---C--------------CCcEEEEECCCCCcccccccccCCCCccEEEecCccCc
Q psy4578         770 SH-KDEIFQVQWSPHNETILASSG---T--------------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK  831 (860)
Q Consensus       770 ~h-~~~V~~l~fsp~g~~lL~tgs---~--------------Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~  831 (860)
                      +. -...+++++.++|.+ +++..   .              .|.+.-+|..  +               +......-..
T Consensus       161 g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~---------------~~~~~~~l~~  222 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D---------------VRVVAEGFDF  222 (355)
T ss_dssp             CTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C---------------CEEEEEEESS
T ss_pred             cCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCccEEEEEECC--e---------------EEEeecCCcc
Confidence            32 246899999999973 55543   1              1333333321  0               0111112244


Q ss_pred             eEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         832 ISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       832 I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      -+.++|+||+++++++-+..+.|.
T Consensus       223 pNGia~spDg~~lYvadt~~~~I~  246 (355)
T 3sre_A          223 ANGINISPDGKYVYIAELLAHKIH  246 (355)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             cCcceECCCCCEEEEEeCCCCeEE
Confidence            688999999998888887766665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.56  E-value=10  Score=40.83  Aligned_cols=220  Identities=11%  Similarity=0.063  Sum_probs=108.0

Q ss_pred             cceeeeEeecc---CCcEEEEEeC---C----CcEEEEEcCCCC--c--ccCe-eecc-CCCCCeeEEEEccCCCeEEEE
Q psy4578         622 RLLIDVAWHLL---HESLFGSVAD---D----QKLMIWDTRSHN--V--SKPS-HTVD-AHTAEVNCLSFNPYSEYILAT  685 (860)
Q Consensus       622 ~~V~~v~~sp~---~~~~lasgs~---D----G~I~IWd~~~~~--~--~~~~-~~~~-~h~~~V~~l~~sp~g~~llas  685 (860)
                      .....|+++|+   ++.++++-+.   +    +.|..|+.....  .  .+.+ ..+. ........++|.|+|. ++++
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt  151 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYIT  151 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEE
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEE
Confidence            46789999985   4565555442   3    567777765431  0  0111 1111 1112346799999997 5555


Q ss_pred             EeCCCceeeecccccccCCCcEEEEeCCCCCC------CCCeeeecCCCCCeEEEEEcC-CCCcEEEEeeC-CC--cEEE
Q psy4578         686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNV------SKPSHTVDAHTAEVNCLSFNP-YSEYILATGSA-DK--TVAL  755 (860)
Q Consensus       686 gs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~------~~~~~~~~~h~~~I~sl~~sp-~g~~llasgs~-Dg--~I~I  755 (860)
                      .+..+..  ..........|+|.-++....-.      ...+. ..++ .....++|+| +|. ++++-.. ++  .|.+
T Consensus       152 ~G~~~~~--~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~-rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~  226 (354)
T 3a9g_A          152 TGDAADP--RLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGH-RNPQGIDWHRASGV-MVATEHGPVGHDEVNI  226 (354)
T ss_dssp             CCCTTCG--GGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECC-SCCCEEEECTTTCC-EEEEECCSSSCCEEEE
T ss_pred             ECCCCCC--ccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEcc-CCcceEEEeCCCCC-EEEEecCCCCCcEEEE
Confidence            4433221  00000112345566665542100      01111 1233 3356899999 555 4444322 21  1333


Q ss_pred             EeCCC---------------CceeeEEeccCCCceEEEEEc-------CCCCCEEEEEECCCcEEEEECCCCCccccccc
Q psy4578         756 WDLRN---------------LKLKLHSFESHKDEIFQVQWS-------PHNETILASSGTDRRLHVWDLSKIGEEQSTED  813 (860)
Q Consensus       756 WDl~~---------------~~~~~~~~~~h~~~V~~l~fs-------p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~  813 (860)
                      ...-.               ...++..+.........++|.       .+|. ++++.-..+.|...++.......    
T Consensus       227 i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~~g~~~----  301 (354)
T 3a9g_A          227 ILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGDNMEVR----  301 (354)
T ss_dssp             ECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECGGGCEE----
T ss_pred             ecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECCCCccc----
Confidence            22110               011233332223467788883       4564 45555566778888876522110    


Q ss_pred             ccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe-CC----------CeEeeccC
Q psy4578         814 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS-ED----------NIMQKPFK  859 (860)
Q Consensus       814 ~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs-~D----------g~IrI~f~  859 (860)
                            .....+.+....+.++++.|||. |+++.. .+          .++||.+.
T Consensus       302 ------~~~~~~~~~~~rp~~v~~~pDG~-lyv~~~~~~G~g~~~~~~g~i~ri~~~  351 (354)
T 3a9g_A          302 ------KISTFFKNVFGRLRDVVIDDDGG-ILISTSNRDGRGSLRAGDDKILKIVSE  351 (354)
T ss_dssp             ------EEEEECTTTSCCEEEEEECTTSC-EEEEECTTSSSSCCCTTCSCEEEEEET
T ss_pred             ------ceeeeccCCCCCeeEEEECCCCc-EEEEEeCCCCCcCCCCCCCEEEEEecC
Confidence                  00111222245789999999997 555543 23          57888653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.40  E-value=5.1  Score=43.17  Aligned_cols=61  Identities=13%  Similarity=0.105  Sum_probs=38.3

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec---cCCCCCeeEEEEccC---CCeEEEEEe
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV---DAHTAEVNCLSFNPY---SEYILATGS  687 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~---~~h~~~V~~l~~sp~---g~~llasgs  687 (860)
                      ....+++|.| ++++++ +..+|.|++++. ++.  ..+..+   .........|+++|+   +..++++-+
T Consensus        29 ~~P~~ia~~p-dG~l~V-~e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~   95 (354)
T 3a9g_A           29 EVPWSIAPLG-GGRYLV-TERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS   95 (354)
T ss_dssp             SCEEEEEEEE-TTEEEE-EETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCCeEEEEcC-CCeEEE-EeCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence            4567899998 566544 566799999973 332  222221   122356889999998   566666554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=92.17  E-value=1.1  Score=52.93  Aligned_cols=127  Identities=14%  Similarity=0.121  Sum_probs=72.7

Q ss_pred             EEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee-cCCCCCeEEEEEcCCCCcEEEEee-C
Q psy4578         672 CLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSEYILATGS-A  749 (860)
Q Consensus       672 ~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~-~~h~~~I~sl~~sp~g~~llasgs-~  749 (860)
                      ++++.+.+..+++.|+.+..-    ..........+.+||..+... ..+..+ ..+.....++++.+++. +++.|+ .
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~----~~~~~~~~~~~~~yd~~t~~w-~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~  263 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDA----FGGSPGGITLTSSWDPSTGIV-SDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGND  263 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTT----TCSCCCSEEEEEEECTTTCCB-CCCEEEECSCCCSSCEEEECTTSC-EEEECSSS
T ss_pred             eEEEEecCCEEEEEecccccc----cccCCCCeEEEEEEeCCCCcE-EeCcccCCCCCCccccccCCCCCC-EEEeCCCC
Confidence            556666333477777765420    000000112488999988754 333333 22333445677888887 677877 4


Q ss_pred             CCcEEEEeCCCCceeeEEeccC-CCceEEEEEcCCCCCEEEEEE-CC-----CcEEEEECCCCC
Q psy4578         750 DKTVALWDLRNLKLKLHSFESH-KDEIFQVQWSPHNETILASSG-TD-----RRLHVWDLSKIG  806 (860)
Q Consensus       750 Dg~I~IWDl~~~~~~~~~~~~h-~~~V~~l~fsp~g~~lL~tgs-~D-----g~I~iWdl~~~~  806 (860)
                      ++.+.+||..+... ...-..+ ...-.+++..++|+ +++.|| .+     ..+.+||..+..
T Consensus       264 ~~~v~~yd~~t~~W-~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          264 AKKTSLYDSSSDSW-IPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             TTCEEEEEGGGTEE-EECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CCceEEecCcCCce-eECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCc
Confidence            56899999987654 2111111 11123455567787 577777 44     579999987643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=91.81  E-value=4.4  Score=47.16  Aligned_cols=60  Identities=5%  Similarity=-0.090  Sum_probs=36.8

Q ss_pred             CCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccc
Q psy4578         749 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       749 ~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                      .+|.+..||+.+++. +-.... ..+..+-.....+. +++.++.||.++.||.++++...+.
T Consensus       451 ~~G~l~A~D~~tG~~-~W~~~~-~~~~~~g~~~tagg-~vf~gt~dg~l~A~D~~tG~~lW~~  510 (599)
T 1w6s_A          451 GLGQIKAYNAITGDY-KWEKME-RFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDLLWKF  510 (599)
T ss_dssp             CCEEEEEECTTTCCE-EEEEEE-SSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CcCeEEEEECCCCCE-EeEecC-CCCccCcceEecCC-EEEEECCCCeEEEEECCCCCEEEEe
Confidence            347899999988875 333321 11111111122344 4667899999999999997765443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=91.69  E-value=6.3  Score=42.39  Aligned_cols=178  Identities=9%  Similarity=0.139  Sum_probs=99.4

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeecc---CCc---E-EEEEeC--CCcEEEEEcCCCCcccCeeeccC------CC-
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLL---HES---L-FGSVAD--DQKLMIWDTRSHNVSKPSHTVDA------HT-  667 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~---~~~---~-lasgs~--DG~I~IWd~~~~~~~~~~~~~~~------h~-  667 (860)
                      +++.+. .+++.+.+.. +.++.+..-|.   ++.   + +++...  +++|++|++....  ..+..+..      .. 
T Consensus        52 L~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--~~l~~i~~~~~pv~t~~  127 (355)
T 3amr_A           52 LVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GTLQSMTDPDHPIATAI  127 (355)
T ss_dssp             EEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT--CCEEECSCTTSCEECCC
T ss_pred             EEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC--CceeeccccccCcCCCC
Confidence            444455 3444444332 56666666651   111   3 333333  5789999774211  12333211      11 


Q ss_pred             CCeeEEEE--ccC-CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCC----CCCCeeeecCCCCCeEEEEEcCCC
Q psy4578         668 AEVNCLSF--NPY-SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHN----VSKPSHTVDAHTAEVNCLSFNPYS  740 (860)
Q Consensus       668 ~~V~~l~~--sp~-g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~----~~~~~~~~~~h~~~I~sl~~sp~g  740 (860)
                      ..+..+++  +|. +...+.+...+|.               +..|++....    ..+.+.++.- .+.+-.+...+..
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~---------------~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~  191 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGE---------------FEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEY  191 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSE---------------EEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTT
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCe---------------EEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCC
Confidence            45566666  664 4433556666677               6676663211    1133444443 4578888888877


Q ss_pred             CcEEEEeeCCCcEEEEeCCC-----CceeeEEec-c-CCCceEEEEE--cCCCC-CEEEEEECCCcEEEEECC
Q psy4578         741 EYILATGSADKTVALWDLRN-----LKLKLHSFE-S-HKDEIFQVQW--SPHNE-TILASSGTDRRLHVWDLS  803 (860)
Q Consensus       741 ~~llasgs~Dg~I~IWDl~~-----~~~~~~~~~-~-h~~~V~~l~f--sp~g~-~lL~tgs~Dg~I~iWdl~  803 (860)
                      .. |..+-.+..|..+|.+.     ... +.... + ....+..++.  .++++ ++++++-.+++..+||..
T Consensus       192 g~-Lyv~eEd~GIw~~da~p~~~~~~~~-v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          192 GR-LYIAEEDEAIWKFSAEPDGGSNGTV-IDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TE-EEEEETTTEEEEEECSTTSCSCCEE-EEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             Ce-EEEecccceEEEEeCCcCCCCCceE-EEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            75 77888886677777542     222 33332 2 2246788887  45555 667666678899999986

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.60  E-value=5.5  Score=39.93  Aligned_cols=142  Identities=11%  Similarity=0.050  Sum_probs=75.6

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCc--c-cCeeeccCC--CCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEE
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNV--S-KPSHTVDAH--TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLM  708 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~--~-~~~~~~~~h--~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~  708 (860)
                      ..+|.+...| +++.=...++..  . .....+ +.  =..+++++|+|+|. |.++  .+|.               +.
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~-LYaV--~~G~---------------Ly   63 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGE-LYGV--LNDK---------------IY   63 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSC-EEEE--ETTE---------------EE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCcc-EEEE--eCCe---------------EE
Confidence            4566677777 655554444321  1 011111 22  24788999999887 5666  5665               44


Q ss_pred             EEeCCCCCCCCCe--eeecCC--CCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc--eeeE---Ee-ccCCCceEEE
Q psy4578         709 IWDTRSHNVSKPS--HTVDAH--TAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK--LKLH---SF-ESHKDEIFQV  778 (860)
Q Consensus       709 iwDl~~~~~~~~~--~~~~~h--~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~--~~~~---~~-~~h~~~V~~l  778 (860)
                      -.+..+.....-.  .+.-+.  -....++.|.|+|. +.++  .||.|+-++--+..  ..+.   .+ ..-=..+..+
T Consensus        64 ~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~l  140 (236)
T 1tl2_A           64 KGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFL  140 (236)
T ss_dssp             EESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEE
T ss_pred             EECCCCCCcccccccccEecccccccceEEEECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEE
Confidence            4444332110000  000000  01147899999998 4555  56999888753321  1111   11 1111467899


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEE
Q psy4578         779 QWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      .|.|+|.  |.+.. |+.++-+.
T Consensus       141 ff~p~G~--Lyav~-dg~lyr~~  160 (236)
T 1tl2_A          141 FFHPNGY--LYAVH-GQQFYKAL  160 (236)
T ss_dssp             EECTTSC--EEEEE-TTEEEEEC
T ss_pred             EECCCce--EEEEe-CCcEEecC
Confidence            9999996  55666 88865443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.47  E-value=17  Score=38.96  Aligned_cols=63  Identities=13%  Similarity=0.042  Sum_probs=40.1

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec----cCCCCCeeEEEEccC---CCeEEEEE
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV----DAHTAEVNCLSFNPY---SEYILATG  686 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~----~~h~~~V~~l~~sp~---g~~llasg  686 (860)
                      .....++|.| ++.++++-...|.|++++..++.. ..+..+    ....+....|+++|+   +.+++++-
T Consensus        32 ~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           32 NSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence            4557999998 677776655489999998654432 112211    223567899999996   45555543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=90.95  E-value=1.3  Score=51.29  Aligned_cols=84  Identities=12%  Similarity=-0.006  Sum_probs=48.3

Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC-CceEEEEEc
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK-DEIFQVQWS  781 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~-~~V~~l~fs  781 (860)
                      .+|.+..||..++   +.+..+... ..+.+......+. +++.++.||.++.||.++++. +..+.... ....-+.+.
T Consensus       442 ~~g~l~a~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg-~v~~g~~dg~l~a~D~~tG~~-lw~~~~~~~~~~~p~~~~  515 (571)
T 2ad6_A          442 EMGQIRAFDLTTG---KAKWTKWEK-FAAWGGTLYTKGG-LVWYATLDGYLKALDNKDGKE-LWNFKMPSGGIGSPMTYS  515 (571)
T ss_dssp             CCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEE
T ss_pred             CCCeEEEEECCCC---CEEEEecCC-CCccceeEEECCC-EEEEEcCCCeEEEEECCCCCE-EEEEeCCCCcEeeeEEEE
Confidence            3578999999887   333333321 2222222233345 466789999999999999987 55554222 112223455


Q ss_pred             CCCCCEEEEEE
Q psy4578         782 PHNETILASSG  792 (860)
Q Consensus       782 p~g~~lL~tgs  792 (860)
                      .+|+.++++.+
T Consensus       516 ~~G~~yv~~~~  526 (571)
T 2ad6_A          516 FKGKQYIGSMY  526 (571)
T ss_dssp             ETTEEEEEEEE
T ss_pred             ECCEEEEEEEC
Confidence            77764444443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.47  E-value=9.8  Score=40.82  Aligned_cols=65  Identities=17%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             ccceeeeEeeccCCc-EEEEEeCCCcEEEEEcCCCCcccCeeec----cCCCCCeeEEEEccC---CCeEEEEEeC
Q psy4578         621 LRLLIDVAWHLLHES-LFGSVADDQKLMIWDTRSHNVSKPSHTV----DAHTAEVNCLSFNPY---SEYILATGSA  688 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~-~lasgs~DG~I~IWd~~~~~~~~~~~~~----~~h~~~V~~l~~sp~---g~~llasgs~  688 (860)
                      ......|+|.| +++ +++ +...|.|++++... .....+..+    ....+....++|+|+   +.+++++-+.
T Consensus        17 l~~P~~i~~~p-dG~~l~V-~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~   89 (353)
T 2g8s_A           17 LDHPWALAFLP-DNHGMLI-TLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSE   89 (353)
T ss_dssp             ESSEEEEEECS-TTCCEEE-EETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCCcEEEEEcC-CCCEEEE-EeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeC
Confidence            34567999998 566 554 56679999998532 111111111    122346789999996   5666666443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=90.42  E-value=11  Score=47.88  Aligned_cols=226  Identities=15%  Similarity=0.198  Sum_probs=127.9

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC----CCCeeEEEEccC
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH----TAEVNCLSFNPY  678 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h----~~~V~~l~~sp~  678 (860)
                      .+.+.|.........+.-..+|.-=.|-.  .+.++-.+ +..|.-|++...  ..+...+..|    ...|..-..+++
T Consensus        87 ~lQiFnl~~k~klks~~~~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~--s~P~k~fdR~~~L~~~QIinY~~d~~  161 (1630)
T 1xi4_A           87 TLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAK  161 (1630)
T ss_pred             eEEEeehHHhhhhcccccCCCceEEEecC--CCeeEEEc-CCeEEEeccCCC--CccHHHHhcchhcccCeeEEeeeCCC
Confidence            45556666666666666667787777874  44444443 358999999753  3444444444    456777888899


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEc--CCCCcEEEEeeC---CCcE
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN--PYSEYILATGSA---DKTV  753 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~s--p~g~~llasgs~---Dg~I  753 (860)
                      .++++++|-..+.         +.-.|.+.+|+.+.+    ....+.||.+....+...  +....+++.+..   .|.+
T Consensus       162 ~kW~~l~gi~~~~---------~~v~G~mQLyS~er~----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL  228 (1630)
T 1xi4_A          162 QKWLLLTGISAQQ---------NRVVGAMQLYSVDRK----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  228 (1630)
T ss_pred             CCeEEEEeeccCC---------Ccccceeeeeecccc----cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence            9998888753322         234577999998764    333456666554444332  222224443332   2688


Q ss_pred             EEEeCCCC---ceee-----EE-ec--cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccE
Q psy4578         754 ALWDLRNL---KLKL-----HS-FE--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL  822 (860)
Q Consensus       754 ~IWDl~~~---~~~~-----~~-~~--~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i  822 (860)
                      +|-++...   ..+.     .. +.  ....-..++..++.-. ++..-+.-|.|+++|+.++.+.....-  .  ...+
T Consensus       229 hi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~~~i~~~ri--s--~~~i  303 (1630)
T 1xi4_A          229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRI--S--GETI  303 (1630)
T ss_pred             EEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccchhhhhccc--c--CCce
Confidence            88888543   1100     00 11  0122234566666555 577788899999999999876543321  1  1223


Q ss_pred             EEecCc--cCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         823 FIHGGH--TAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       823 ~~~~~h--~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                      +....+  ++.|  ++.+..|..+-++..++++
T Consensus       304 F~~~~~~~~~g~--~~vnr~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          304 FVTAPHEATAGI--IGVNRKGQVLSVCVEEENI  334 (1630)
T ss_pred             EEeccCCCCCce--EEEcCCceEEEEEEccchh
Confidence            322222  3334  4455677744444444433

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=90.34  E-value=3  Score=44.91  Aligned_cols=104  Identities=12%  Similarity=0.140  Sum_probs=59.0

Q ss_pred             CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeee---ecCCCCCeEEEEEcCC---CC
Q psy4578         668 AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT---VDAHTAEVNCLSFNPY---SE  741 (860)
Q Consensus       668 ~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~---~~~h~~~I~sl~~sp~---g~  741 (860)
                      .....++|.|+|+ ++++ ..+|.               |.+++  .+. ...+..   ..........++++|+   +.
T Consensus        31 ~~P~~ia~~pdG~-l~V~-e~~g~---------------I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g   90 (352)
T 2ism_A           31 EVPWALAFLPDGG-MLIA-ERPGR---------------IRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEP   90 (352)
T ss_dssp             SCEEEEEECTTSC-EEEE-ETTTE---------------EEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSC
T ss_pred             CCceEEEEcCCCe-EEEE-eCCCe---------------EEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCC
Confidence            3567999999998 4444 45576               66665  221 011111   1122356789999998   55


Q ss_pred             cEEEEeeCC-----CcEEEEeCCCCce-----eeEEec---cCCCceEEEEEcCCCCCEEEEEE
Q psy4578         742 YILATGSAD-----KTVALWDLRNLKL-----KLHSFE---SHKDEIFQVQWSPHNETILASSG  792 (860)
Q Consensus       742 ~llasgs~D-----g~I~IWDl~~~~~-----~~~~~~---~h~~~V~~l~fsp~g~~lL~tgs  792 (860)
                      .++++-+.+     +.|..|+......     .+..+.   +.......++|.|+|. ++++.+
T Consensus        91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G  153 (352)
T 2ism_A           91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTG  153 (352)
T ss_dssp             EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECC
T ss_pred             EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEEC
Confidence            556555433     6788888764321     112232   1112346899999995 455544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=89.33  E-value=31  Score=40.91  Aligned_cols=186  Identities=8%  Similarity=0.049  Sum_probs=101.3

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      ..|.++.-..  ...|..|+.+| +..||..+.....   ........|.++.. .+|.  +..|+.+|           
T Consensus        63 ~~i~~i~~d~--~g~lWigT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~--lWigt~~G-----------  122 (758)
T 3ott_A           63 TRIYCGVIID--NTYLYMGTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT--LWLGALNG-----------  122 (758)
T ss_dssp             SCEEEEEEET--TTEEEEEETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE--EEEEETTE-----------
T ss_pred             ceEEEEEEcC--CCcEEEEeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc--EEEEcCCc-----------
Confidence            4578877664  34555566665 7889987642211   11112235666654 3443  44455555           


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeee-----cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc----CC
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTV-----DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES----HK  772 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~-----~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~----h~  772 (860)
                           +..+|..+..    +..+     ......|.++....+|.  +..|+.+ .+..+|..+..........    ..
T Consensus       123 -----l~~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~  190 (758)
T 3ott_A          123 -----LYTYQLQSRK----LTSFDTRRNGLPNNTIYSIIRTKDNQ--IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSN  190 (758)
T ss_dssp             -----EEEEETTTCC----EEEECHHHHCCSCSCEEEEEECTTCC--EEEEETT-EEEEEETTTTEEEEECCCCCTTCSS
T ss_pred             -----ceeEeCCCCe----EEEeccCCCCcCCCeEEEEEEcCCCC--EEEEeCC-CHhhCccCCCceEEecCCCcccccc
Confidence                 7778776532    1122     01234688888888787  3345544 5778887765531111111    12


Q ss_pred             CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      ..|.++....++.. |..|+. +-+..+|..+....            .....  ....|.++....+|.. .+ |+.+|
T Consensus       191 ~~i~~i~~d~~~~~-lWigt~-~Gl~~~~~~~~~~~------------~~~~l--~~~~i~~i~~d~~g~l-Wi-gT~~G  252 (758)
T 3ott_A          191 LFVNSLLEDTTRQC-VWIGTE-GYLFQYFPSTGQIK------------QTEAF--HNNSIKSLALDGNGDL-LA-GTDNG  252 (758)
T ss_dssp             CCEEEEEEETTTTE-EEEEEE-EEEEEEETTTTEEE------------EEEEE--EEEEEEEEEECTTCCE-EE-EETTE
T ss_pred             ceeEEEEEECCCCE-EEEEEC-CCCeEEcCCCCeEE------------eccCC--CCCeEEEEEEcCCCCE-EE-EeCCc
Confidence            34888888777654 444553 45778887652210            00111  1345888888888883 33 34667


Q ss_pred             eEeec
Q psy4578         853 IMQKP  857 (860)
Q Consensus       853 ~IrI~  857 (860)
                      ..+++
T Consensus       253 l~~~~  257 (758)
T 3ott_A          253 LYVYH  257 (758)
T ss_dssp             EEEEC
T ss_pred             eeEEe
Confidence            76654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.31  E-value=5.6  Score=41.46  Aligned_cols=152  Identities=12%  Similarity=0.145  Sum_probs=74.2

Q ss_pred             CCcEEEEEeC----C-----CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578         633 HESLFGSVAD----D-----QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY  703 (860)
Q Consensus       633 ~~~~lasgs~----D-----G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~  703 (860)
                      ++.+++.|+.    +     ..+.+||..+.. ...+..+.........+.+  ++ .+++.|+.++.          ..
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~----------~~  135 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ-WSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGC----------IH  135 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTE-EEECCCCSSCCBTCEEEEE--TT-EEEEECCEETT----------EE
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCe-EeECCCCCcCccccEEEEE--CC-EEEEEcCCCCC----------cc
Confidence            5667777765    2     357888887642 1112111111112222222  23 46666664432          12


Q ss_pred             CCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCceeeE-EeccCCCceEE
Q psy4578         704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKLKLH-SFESHKDEIFQ  777 (860)
Q Consensus       704 dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~~~~-~~~~h~~~V~~  777 (860)
                      ...+.+||..+... ..+..+........++.+  ++. +++.|+.+     ..+.+||..+...... .+........+
T Consensus       136 ~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  211 (308)
T 1zgk_A          136 HNSVERYEPERDEW-HLVAPMLTRRIGVGVAVL--NRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGV  211 (308)
T ss_dssp             CCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred             cccEEEECCCCCeE-eECCCCCccccceEEEEE--CCE-EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceE
Confidence            23488888876521 111111111222223333  344 67777764     4589999987764111 11111111222


Q ss_pred             EEEcCCCCCEEEEEECC-----CcEEEEECCCC
Q psy4578         778 VQWSPHNETILASSGTD-----RRLHVWDLSKI  805 (860)
Q Consensus       778 l~fsp~g~~lL~tgs~D-----g~I~iWdl~~~  805 (860)
                      +.+  ++ .+++.||.+     ..+.+||+.+.
T Consensus       212 ~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          212 CVL--HN-CIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             EEE--TT-EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EEE--CC-EEEEEeCCCCCCccceEEEEeCCCC
Confidence            323  34 467777754     56889998774

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.24  E-value=10  Score=42.32  Aligned_cols=64  Identities=17%  Similarity=0.281  Sum_probs=39.2

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC------CCCCeeEEEEccC---CCeEEEEEe
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCLSFNPY---SEYILATGS  687 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~------h~~~V~~l~~sp~---g~~llasgs  687 (860)
                      ....+++|.| +++++++-...+.|.+++..++.. ..+..+..      ..+....|+|+|+   +..++++-+
T Consensus        27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence            3556899998 677666544334788887654322 22222211      2456789999996   666666654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=88.81  E-value=5.5  Score=41.28  Aligned_cols=152  Identities=12%  Similarity=0.133  Sum_probs=74.6

Q ss_pred             CCcEEEEEeCCC-----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578         633 HESLFGSVADDQ-----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL  707 (860)
Q Consensus       633 ~~~~lasgs~DG-----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I  707 (860)
                      ++.+++.|+.++     .+.+||..+.. ...+..+.........+.+   +..+++.|+.++.          .....+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~----------~~~~~~  126 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQ-WTSVANMRDRRSTLGAAVL---NGLLYAVGGFDGS----------TGLSSV  126 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE---TTEEEEEEEECSS----------CEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCc-eeeCCCCCccccceEEEEE---CCEEEEEcCCCCC----------ccCceE
Confidence            567777777543     57888887642 1222222111122222222   3357777776543          111347


Q ss_pred             EEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-------CcEEEEeCCCCceeeE-EeccCCCceEEEE
Q psy4578         708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-------KTVALWDLRNLKLKLH-SFESHKDEIFQVQ  779 (860)
Q Consensus       708 ~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-------g~I~IWDl~~~~~~~~-~~~~h~~~V~~l~  779 (860)
                      .+||+.+... ..+..+........++.+  ++. +++.|+.+       ..+.+||..+...... .+.........+.
T Consensus       127 ~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  202 (302)
T 2xn4_A          127 EAYNIKSNEW-FHVAPMNTRRSSVGVGVV--GGL-LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV  202 (302)
T ss_dssp             EEEETTTTEE-EEECCCSSCCBSCEEEEE--TTE-EEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             EEEeCCCCeE-eecCCCCCcccCceEEEE--CCE-EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE
Confidence            7888876521 112112111122222333  344 67777643       4588999987764211 1111111122222


Q ss_pred             EcCCCCCEEEEEECC-----CcEEEEECCCC
Q psy4578         780 WSPHNETILASSGTD-----RRLHVWDLSKI  805 (860)
Q Consensus       780 fsp~g~~lL~tgs~D-----g~I~iWdl~~~  805 (860)
                      +  ++ .+++.||.+     ..+.+||+.+.
T Consensus       203 ~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          203 L--NN-LLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             E--TT-EEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             E--CC-EEEEECCCCCCcccceEEEEeCCCC
Confidence            2  34 467777754     46888998764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=88.49  E-value=6.2  Score=40.81  Aligned_cols=151  Identities=12%  Similarity=0.115  Sum_probs=75.0

Q ss_pred             CCcEEEEEeCCC-----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578         633 HESLFGSVADDQ-----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL  707 (860)
Q Consensus       633 ~~~~lasgs~DG-----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I  707 (860)
                      ++.+++.|+.++     .+.+||..+.. ...+...........++.+  ++ .+++.|+.++.          .....+
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~----------~~~~~~  177 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQ-WSMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGL----------NILNSV  177 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTE-EEEEEECSSCCBSCEEEEE--TT-EEEEECCBCSS----------CBCCCE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCe-EEECCCCCCCcccceEEEE--CC-EEEEECCCCCC----------cccceE
Confidence            567777776543     57888887642 2222222211112222222  33 46777766543          123458


Q ss_pred             EEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCceeeE-EeccCCCceEEEEEc
Q psy4578         708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKLKLH-SFESHKDEIFQVQWS  781 (860)
Q Consensus       708 ~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~~~~-~~~~h~~~V~~l~fs  781 (860)
                      .+||+.+... ..+..+........++.+  ++ .+++.|+.+     ..+.+||..+...... .+........++.+ 
T Consensus       178 ~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-  252 (301)
T 2vpj_A          178 EKYDPHTGHW-TNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-  252 (301)
T ss_dssp             EEEETTTTEE-EEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred             EEEeCCCCcE-EeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-
Confidence            8899876532 222112111122223333  34 467788764     4689999988765211 11111111222222 


Q ss_pred             CCCCCEEEEEECC-----CcEEEEECCC
Q psy4578         782 PHNETILASSGTD-----RRLHVWDLSK  804 (860)
Q Consensus       782 p~g~~lL~tgs~D-----g~I~iWdl~~  804 (860)
                       ++. +++.||.+     ..+.+||..+
T Consensus       253 -~~~-i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          253 -RGR-LYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             -TTE-EEEECCBCSSSBEEEEEEEETTT
T ss_pred             -CCE-EEEEcCcCCCcccccEEEEcCCC
Confidence             444 67777755     3577788776

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=88.14  E-value=7.5  Score=40.30  Aligned_cols=153  Identities=8%  Similarity=0.088  Sum_probs=74.1

Q ss_pred             CCcEEEEEeCC----CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEE
Q psy4578         633 HESLFGSVADD----QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLM  708 (860)
Q Consensus       633 ~~~~lasgs~D----G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~  708 (860)
                      ++.+++.|+.+    ..+.+||..+.. ...+..+.........+.+   +..+++.|+.+..         ......+.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~---------~~~~~~~~  121 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDS-WYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVG---------NSALYLFE  121 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTE-EEEEECCSSCCBSCEEEEE---TTEEEEECCBBTT---------BSCCCCEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCe-EEECCCCCccccceeEEEE---CCEEEEECCCCCC---------CcEeeeEE
Confidence            56777777754    568888887642 1222222111112222222   3346777765411         12234588


Q ss_pred             EEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC---------CCcEEEEeCCCCceeeE-EeccCCCceEEE
Q psy4578         709 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA---------DKTVALWDLRNLKLKLH-SFESHKDEIFQV  778 (860)
Q Consensus       709 iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~---------Dg~I~IWDl~~~~~~~~-~~~~h~~~V~~l  778 (860)
                      +||..+... ..+..+........++.+  ++. +++.|+.         -..+.+||..+...... .+.........+
T Consensus       122 ~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  197 (306)
T 3ii7_A          122 CYDTRTESW-HTKPSMLTQRCSHGMVEA--NGL-IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLV  197 (306)
T ss_dssp             EEETTTTEE-EEECCCSSCCBSCEEEEE--TTE-EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             EEeCCCCce-EeCCCCcCCcceeEEEEE--CCE-EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEE
Confidence            888876531 111111111112222332  344 6677654         34588999988764211 111111111222


Q ss_pred             EEcCCCCCEEEEEECC-----CcEEEEECCCC
Q psy4578         779 QWSPHNETILASSGTD-----RRLHVWDLSKI  805 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~D-----g~I~iWdl~~~  805 (860)
                      .+  ++. +++.||.+     ..+.+||+.+.
T Consensus       198 ~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          198 FV--KDK-IFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             EE--TTE-EEEECCEETTEEBCCEEEEETTTT
T ss_pred             EE--CCE-EEEEeCCCCCCCCceEEEeeCCCC
Confidence            22  343 67777643     46888998774

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=87.25  E-value=17  Score=45.76  Aligned_cols=155  Identities=8%  Similarity=0.085  Sum_probs=88.8

Q ss_pred             cceeeeE---eeccCCcEEEEEe----------CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeC
Q psy4578         622 RLLIDVA---WHLLHESLFGSVA----------DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA  688 (860)
Q Consensus       622 ~~V~~v~---~sp~~~~~lasgs----------~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~  688 (860)
                      ..+.+++   |......++++|+          ..|.|.+|++..++ .+.+.. ....++|++++--. | +++++-+ 
T Consensus       829 E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv~~-~~v~g~v~al~~~~-g-~Lla~ig-  903 (1158)
T 3ei3_A          829 EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTVAE-KEVKGAVYSMVEFN-G-KLLASIN-  903 (1158)
T ss_dssp             EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEEEE-EEESSCEEEEEEET-T-EEEEEET-
T ss_pred             cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEEEE-EEcCCcCEEEeeeC-C-EEEEEcC-
Confidence            3344444   3322357888876          35889999997431 222222 23367888877543 4 4444332 


Q ss_pred             CCceeeecccccccCCCcEEEEeCCCCCCCCCee-eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe--CCCCceee
Q psy4578         689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH-TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD--LRNLKLKL  765 (860)
Q Consensus       689 Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~-~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD--l~~~~~~~  765 (860)
                       ..               +++|++...+   .+. ....+ ..|..+.....+++ ++.|..-.+|.++.  ....+...
T Consensus       904 -~~---------------l~vy~l~~~~---~L~~~~~~~-~~i~~~~l~~~~~~-I~vgD~~~Sv~~~~y~~~~~~L~~  962 (1158)
T 3ei3_A          904 -ST---------------VRLYEWTTEK---ELRTECNHY-NNIMALYLKTKGDF-ILVGDLMRSVLLLAYKPMEGNFEE  962 (1158)
T ss_dssp             -TE---------------EEEEEECTTS---CEEEEEEEC-CCSCEEEEEEETTE-EEEEESSBCEEEEEEETTTTEEEE
T ss_pred             -CE---------------EEEEECCCCc---eEEEEeecc-ccEEEEEEeccCCE-EEEEEhhheEEEEEEEcCCCeEEE
Confidence             33               8999987642   222 11111 11332222234664 77887777776654  44443322


Q ss_pred             EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         766 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       766 ~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ..-..+..+++++.+-.++.  ++.+..+|.+.+.....
T Consensus       963 ~a~D~~~~~vta~~~ld~~t--~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          963 IARDFNPNWMSAVEILDDDN--FLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEECCSCBCEEEEEEEETTE--EEEEETTSEEEEEEECT
T ss_pred             EEeecccccEEEEEEEccCc--EEEEcCCCcEEEEecCC
Confidence            22334567889999876653  67789999999998765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=87.24  E-value=6.6  Score=45.47  Aligned_cols=84  Identities=18%  Similarity=0.166  Sum_probs=49.3

Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc-eEEEEEc
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE-IFQVQWS  781 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~-V~~l~fs  781 (860)
                      ..|.+..||+.++   +.+...... ..+..-.....+. +++.|+.||.++.||.++++. +..+....+. ..-+.|.
T Consensus       464 ~~G~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~-lW~~~~~~g~~a~P~~y~  537 (582)
T 1flg_A          464 HVGSLRAMDPVSG---KVVWEHKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKE-LWKFQTGSGIVSPPITWE  537 (582)
T ss_dssp             CSEEEEEECTTTC---CEEEEEEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEE
T ss_pred             CcceEEEEECCCC---CEEEEecCC-CCCcccceEeCCC-EEEEECCCCcEEEEECCCCCE-EEEecCCCCcccCceEEE
Confidence            3578999999987   333333222 1121111112344 577799999999999999987 5555532221 1225666


Q ss_pred             CCCCCEEEEEE
Q psy4578         782 PHNETILASSG  792 (860)
Q Consensus       782 p~g~~lL~tgs  792 (860)
                      .+|+.++++.+
T Consensus       538 ~~G~qYv~~~~  548 (582)
T 1flg_A          538 QDGEQYLGVTV  548 (582)
T ss_dssp             ETTEEEEEEEE
T ss_pred             ECCEEEEEEEc
Confidence            78875454443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=86.72  E-value=35  Score=36.39  Aligned_cols=74  Identities=8%  Similarity=0.073  Sum_probs=40.8

Q ss_pred             CceEEEEEcC-------CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEE
Q psy4578         773 DEIFQVQWSP-------HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI  845 (860)
Q Consensus       773 ~~V~~l~fsp-------~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Ll  845 (860)
                      .....++|..       +|. ++++.-..+.|...++.......           ....+.+....+.++++.|||...+
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~-l~v~~~~~~~v~~~~~~~~~~~~-----------~~~~~~~~~~rp~~v~~~pdG~lyv  338 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQK-LFIGALKDKDVIVMSVNGDKVTE-----------DGRILTDRGQRIRDVRTGPDGYLYV  338 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTE-EEEEETTTTEEEEEEEETTEEEE-----------EEEESGGGCCCEEEEEECTTSCEEE
T ss_pred             cCcceeEEECCccCcccCCc-EEEEEccCCEEEEEEeCCCeEee-----------eEEcccCCCCceeEEEECCCCcEEE
Confidence            4567777764       344 45555566777777765421100           0011123345799999999999433


Q ss_pred             EEEe-CCCeEeecc
Q psy4578         846 CSVS-EDNIMQKPF  858 (860)
Q Consensus       846 asgs-~Dg~IrI~f  858 (860)
                      ++-. .+.+.||..
T Consensus       339 ~td~~~g~I~ri~~  352 (353)
T 2g8s_A          339 LTDESSGELLKVSP  352 (353)
T ss_dssp             EECSTTEEEEEEEC
T ss_pred             EEeCCCCEEEEEeC
Confidence            3332 344566643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=86.59  E-value=28  Score=38.76  Aligned_cols=108  Identities=18%  Similarity=0.251  Sum_probs=57.1

Q ss_pred             CCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeec------CCCCCeEEEEEcCC--
Q psy4578         668 AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVD------AHTAEVNCLSFNPY--  739 (860)
Q Consensus       668 ~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~------~h~~~I~sl~~sp~--  739 (860)
                      ...+.++|.|+|+ ++++-...+.               |.+++..++.. ..+..+.      ........|+|+|+  
T Consensus        27 ~~P~~~a~~pdG~-l~V~e~~gg~---------------I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~   89 (454)
T 1cru_A           27 NKPHALLWGPDNQ-IWLTERATGK---------------ILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFK   89 (454)
T ss_dssp             SSEEEEEECTTSC-EEEEETTTCE---------------EEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTT
T ss_pred             CCceEEEEcCCCc-EEEEEcCCCE---------------EEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcC
Confidence            4567999999998 4555433334               44444322211 1111111      12456789999995  


Q ss_pred             -CCcEEEEeeC------------CCcEEEEeCCCCc-------eeeEEecc-CCCceEEEEEcCCCCCEEEEEEC
Q psy4578         740 -SEYILATGSA------------DKTVALWDLRNLK-------LKLHSFES-HKDEIFQVQWSPHNETILASSGT  793 (860)
Q Consensus       740 -g~~llasgs~------------Dg~I~IWDl~~~~-------~~~~~~~~-h~~~V~~l~fsp~g~~lL~tgs~  793 (860)
                       +..+.++-+.            ...|.-|+.....       ..+..+.. .......++|.|+|. |+++.+.
T Consensus        90 ~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd  163 (454)
T 1cru_A           90 NNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGD  163 (454)
T ss_dssp             TSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECC
T ss_pred             cCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECC
Confidence             5545555442            2346666553321       11111221 123478899999997 4555553

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=85.66  E-value=7.8  Score=40.05  Aligned_cols=154  Identities=10%  Similarity=0.118  Sum_probs=73.9

Q ss_pred             CCcEEEEEeCCC-----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578         633 HESLFGSVADDQ-----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL  707 (860)
Q Consensus       633 ~~~~lasgs~DG-----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I  707 (860)
                      ++.+++.|+.++     .+.+||..+.. ...+..+........++.+   +..+++.|+.++.        .......+
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~--------~~~~~~~~  175 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNE-WFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVA--------SRQCLSTV  175 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTE-EEEECCCSSCCBSCEEEEE---TTEEEEECCEETT--------TTEECCCE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCe-EeecCCCCCcccCceEEEE---CCEEEEEeCCCCC--------CCccccEE
Confidence            567777777654     46778876532 1222222111111222222   2346677665432        00112348


Q ss_pred             EEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCceeeE-EeccCCCceEEEEEc
Q psy4578         708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKLKLH-SFESHKDEIFQVQWS  781 (860)
Q Consensus       708 ~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~~~~-~~~~h~~~V~~l~fs  781 (860)
                      .+||+.+... ..+..+........++.+  ++. +++.|+.+     ..+.+||..+...... ...........+.+ 
T Consensus       176 ~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-  250 (302)
T 2xn4_A          176 ECYNATTNEW-TYIAEMSTRRSGAGVGVL--NNL-LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-  250 (302)
T ss_dssp             EEEETTTTEE-EEECCCSSCCBSCEEEEE--TTE-EEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred             EEEeCCCCcE-EECCCCccccccccEEEE--CCE-EEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-
Confidence            8888876521 111112111122223333  344 67788764     4689999988764211 11111111122222 


Q ss_pred             CCCCCEEEEEECCC-----cEEEEECCCC
Q psy4578         782 PHNETILASSGTDR-----RLHVWDLSKI  805 (860)
Q Consensus       782 p~g~~lL~tgs~Dg-----~I~iWdl~~~  805 (860)
                       ++. +++.||.++     .+.+||..+.
T Consensus       251 -~~~-i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          251 -NGL-LYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             -TTE-EEEECCBCSSSBCCCEEEEETTTT
T ss_pred             -CCE-EEEECCcCCCcccccEEEEcCCCC
Confidence             444 677777553     4888888764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=85.15  E-value=8.2  Score=40.15  Aligned_cols=151  Identities=11%  Similarity=0.147  Sum_probs=73.7

Q ss_pred             CCcEEEEEeCC-----CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcE
Q psy4578         633 HESLFGSVADD-----QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL  707 (860)
Q Consensus       633 ~~~~lasgs~D-----G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I  707 (860)
                      ++.+++.|+.+     ..+.+||..+.. ...+..+........++.+   +..+++.|+.++.          .....+
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~----------~~~~~~  186 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDE-WHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGT----------NRLNSA  186 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE---TTEEEEECCBCSS----------CBCCCE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCe-EeECCCCCccccceEEEEE---CCEEEEEeCCCCC----------CcCceE
Confidence            56777777643     357888887642 1111111111122222333   3357777776543          113458


Q ss_pred             EEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCceeeE-EeccCCCceEEEEEc
Q psy4578         708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKLKLH-SFESHKDEIFQVQWS  781 (860)
Q Consensus       708 ~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~~~~-~~~~h~~~V~~l~fs  781 (860)
                      .+||+.+... ..+..+........++.+  ++. +++.|+.+     ..+.+||+.+...... .+.........+.+ 
T Consensus       187 ~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-  261 (308)
T 1zgk_A          187 ECYYPERNEW-RMITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-  261 (308)
T ss_dssp             EEEETTTTEE-EECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-
T ss_pred             EEEeCCCCeE-eeCCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-
Confidence            8888876531 111111111222223333  344 67788765     5699999988764211 11111111122222 


Q ss_pred             CCCCCEEEEEECC-----CcEEEEECCC
Q psy4578         782 PHNETILASSGTD-----RRLHVWDLSK  804 (860)
Q Consensus       782 p~g~~lL~tgs~D-----g~I~iWdl~~  804 (860)
                       ++ .+++.||.+     ..+.+||+.+
T Consensus       262 -~~-~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          262 -QG-RIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             -TT-EEEEECCBCSSCBCCEEEEEETTT
T ss_pred             -CC-EEEEEcCcCCCcccceEEEEcCCC
Confidence             34 467777644     3567777765

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=84.49  E-value=18  Score=37.92  Aligned_cols=127  Identities=9%  Similarity=0.132  Sum_probs=68.6

Q ss_pred             CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEE-eCCCceeeecccccccCCCcEEEEeCCCCCCCCCee
Q psy4578         644 QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG-SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSH  722 (860)
Q Consensus       644 G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasg-s~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~  722 (860)
                      +.|+..++...+.    ..+..  .  .+..|++++++++.+. +.++.             ..|...++...    ...
T Consensus        88 ~~Iy~i~~dg~~~----~~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~-------------~~Iy~~~~dGs----~~~  142 (302)
T 3s25_A           88 NSLCRIKRNGHGS----TVLDP--D--PCIYASLIGNYIYYLHYDTQTA-------------TSLYRIRIDGE----EKK  142 (302)
T ss_dssp             EEEEEEETTSCCC----EEEEC--S--CEEEEEEETTEEEEEEESSSSC-------------EEEEEEETTSC----CCE
T ss_pred             CeEEEEeCCCCcc----eEeec--C--CccEEEEeCCEEEEEeecCCCC-------------ceEEEEECCCC----CeE
Confidence            3566667665421    12211  1  1236778888866655 22332             22555566543    122


Q ss_pred             eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-CcEEEEE
Q psy4578         723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-RRLHVWD  801 (860)
Q Consensus       723 ~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-g~I~iWd  801 (860)
                      .+..+..    ..++|+++.++.+......|..-++.+... ...+.   +... ..++|++.++..+-..+ ..|..-+
T Consensus       143 ~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~-~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~  213 (302)
T 3s25_A          143 KIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE-ALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVN  213 (302)
T ss_dssp             EEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE-EEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEEC
T ss_pred             EEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE-EEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEE
Confidence            3333322    456778888776766567888888887664 22232   2222 34569998866555433 3555555


Q ss_pred             CCC
Q psy4578         802 LSK  804 (860)
Q Consensus       802 l~~  804 (860)
                      +..
T Consensus       214 ldG  216 (302)
T 3s25_A          214 INN  216 (302)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=83.90  E-value=14  Score=36.99  Aligned_cols=150  Identities=11%  Similarity=0.058  Sum_probs=76.6

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCccc---Ceeecc-CCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSK---PSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~---~~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      ..+.+++|+| ++.+.++  .+|.+.-.+..+.....   .-..+. .--....++.|.|+|. +.++  .||.      
T Consensus        41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~------  108 (236)
T 1tl2_A           41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDK------  108 (236)
T ss_dssp             TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTE------
T ss_pred             ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC-EEEe--CCCE------
Confidence            3677999999 7777666  66775555543321100   001110 0011247899999997 4555  4577      


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCee---ee-cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-----eeEEe
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSH---TV-DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-----KLHSF  768 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~---~~-~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-----~~~~~  768 (860)
                               |.-++-.+.....-+.   .+ .+-=..+..|.+.|+|. |.+..  ||.+.-+..-....     ....+
T Consensus       109 ---------iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~  176 (236)
T 1tl2_A          109 ---------LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQDNWLARATKI  176 (236)
T ss_dssp             ---------EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTCCHHHHCEEE
T ss_pred             ---------EEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCccccccccee
Confidence                     6555543221111110   11 11124679999999998 45444  77754332221110     01111


Q ss_pred             c-cCCCceEEEEEcCCCCCEEEEEECCCcEE
Q psy4578         769 E-SHKDEIFQVQWSPHNETILASSGTDRRLH  798 (860)
Q Consensus       769 ~-~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~  798 (860)
                      . ..-..-+.+.|+++|.  |.... +|.+.
T Consensus       177 g~~g~~~yr~l~f~~~G~--l~~v~-~g~~Y  204 (236)
T 1tl2_A          177 GQGGWDTFKFLFFSSVGT--LFGVQ-GGKFY  204 (236)
T ss_dssp             ESSSGGGEEEEEECTTSC--EEEEE-TTEEE
T ss_pred             ccCCcceEEEEEECCCCc--EEEEe-CCeEE
Confidence            1 2223445577999986  33444 77443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=83.75  E-value=9.8  Score=39.38  Aligned_cols=156  Identities=9%  Similarity=0.100  Sum_probs=75.0

Q ss_pred             CCcEEEEEeCC------CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCc
Q psy4578         633 HESLFGSVADD------QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQK  706 (860)
Q Consensus       633 ~~~~lasgs~D------G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~  706 (860)
                      ++.+++.|+.+      ..+.+||..+.. ...+..+........++.+  ++ .+++.|+.++.      ...+.....
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~------~~~~~~~~~  170 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTES-WHTKPSMLTQRCSHGMVEA--NG-LIYVCGGSLGN------NVSGRVLNS  170 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TT-EEEEECCEESC------TTTCEECCC
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCc-eEeCCCCcCCcceeEEEEE--CC-EEEEECCCCCC------CCcccccce
Confidence            56777777765      458888887642 1112111111111122222  23 46666654332      000001345


Q ss_pred             EEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----CcEEEEeCCCCceeeE-EeccCCCceEEEEE
Q psy4578         707 LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----KTVALWDLRNLKLKLH-SFESHKDEIFQVQW  780 (860)
Q Consensus       707 I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----g~I~IWDl~~~~~~~~-~~~~h~~~V~~l~f  780 (860)
                      +.+||+.+... ..+..+.........+.+  ++. +++.|+.+     ..+.+||..+...... .+........++.+
T Consensus       171 ~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  246 (306)
T 3ii7_A          171 CEVYDPATETW-TELCPMIEARKNHGLVFV--KDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV  246 (306)
T ss_dssp             EEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE
T ss_pred             EEEeCCCCCeE-EECCCccchhhcceEEEE--CCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE
Confidence            88899877531 222222111122222333  344 67777654     4688999988764111 11111112223333


Q ss_pred             cCCCCCEEEEEECC-----CcEEEEECCCC
Q psy4578         781 SPHNETILASSGTD-----RRLHVWDLSKI  805 (860)
Q Consensus       781 sp~g~~lL~tgs~D-----g~I~iWdl~~~  805 (860)
                        ++ .+++.||.+     ..+.+||..+.
T Consensus       247 --~~-~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          247 --GS-IVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             --TT-EEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             --CC-EEEEEeCcCCCeeeeeEEEEcCCCC
Confidence              34 467788744     56888888763

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=83.56  E-value=16  Score=38.31  Aligned_cols=114  Identities=11%  Similarity=0.139  Sum_probs=63.4

Q ss_pred             EEEccCCCeEEEEEeCCCc---eeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEe--
Q psy4578         673 LSFNPYSEYILATGSADKT---QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG--  747 (860)
Q Consensus       673 l~~sp~g~~llasgs~Dg~---i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasg--  747 (860)
                      --++++|.++..+...++.   ..+|     ......|+..++...+   . ..+..  .  .+..|++++.++..+-  
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~-----~~n~~~Iy~i~~dg~~---~-~~l~~--~--~~~~~s~~g~~Iy~~~~~  124 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFF-----SYDRNSLCRIKRNGHG---S-TVLDP--D--PCIYASLIGNYIYYLHYD  124 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCS-----SCCSEEEEEEETTSCC---C-EEEEC--S--CEEEEEEETTEEEEEEES
T ss_pred             eeEEEcCCEEEEEECCCCccccccee-----ccCCCeEEEEeCCCCc---c-eEeec--C--CccEEEEeCCEEEEEeec
Confidence            4567899988877766531   0000     0113347777777652   1 12221  1  1236788898766554  


Q ss_pred             -eCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578         748 -SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       748 -s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~  805 (860)
                       ..+..|..-++.+..  ...+..+..    ..|+++|+.+..+......|..-++...
T Consensus       125 ~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          125 TQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             SSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT
T ss_pred             CCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC
Confidence             234556666666544  333443332    4567888886666554677887777653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=83.54  E-value=72  Score=37.67  Aligned_cols=191  Identities=10%  Similarity=0.030  Sum_probs=99.1

Q ss_pred             ceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec--cCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV--DAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~--~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      .|.++...  ++. +..|+.+ -+..+|..++.. ......  ......|.++....+|.  +..|+.+|          
T Consensus       104 ~i~~i~~~--~g~-lWigt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~G----------  166 (758)
T 3ott_A          104 DVRTMALQ--GDT-LWLGALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQ--IYVGTYNG----------  166 (758)
T ss_dssp             CEEEEEEE--TTE-EEEEETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCC--EEEEETTE----------
T ss_pred             eEEEEEec--CCc-EEEEcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCC--EEEEeCCC----------
Confidence            46666432  444 4445555 577888765322 111000  11234678888777776  33344555          


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeec--C----CCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVD--A----HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE  774 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~--~----h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~  774 (860)
                            +..+|..+..    ...+.  .    ....|.++...+++.. |..|+. +.+..+|..+.... .........
T Consensus       167 ------l~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d~~~~~-lWigt~-~Gl~~~~~~~~~~~-~~~~l~~~~  233 (758)
T 3ott_A          167 ------LCRYIPSNGK----FEGIPLPVHSSQSNLFVNSLLEDTTRQC-VWIGTE-GYLFQYFPSTGQIK-QTEAFHNNS  233 (758)
T ss_dssp             ------EEEEETTTTE----EEEECCCCCTTCSSCCEEEEEEETTTTE-EEEEEE-EEEEEEETTTTEEE-EEEEEEEEE
T ss_pred             ------HhhCccCCCc----eEEecCCCccccccceeEEEEEECCCCE-EEEEEC-CCCeEEcCCCCeEE-eccCCCCCe
Confidence                  5566655431    11110  0    1234888888877663 444553 46888998766531 111112345


Q ss_pred             eEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         775 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      |.++....+|.  |..|+.+ -+.+++..+.... ..........      .-....|.++..+.+|.. . .|+..|..
T Consensus       234 i~~i~~d~~g~--lWigT~~-Gl~~~~~~~~~~~-~~~~~~~~~~------~l~~~~i~~i~~D~~g~l-W-iGT~~Gl~  301 (758)
T 3ott_A          234 IKSLALDGNGD--LLAGTDN-GLYVYHNDTTPLQ-HIIHDSRNIQ------SLTNNIIWNIFADQEHNI-W-LGTDYGIS  301 (758)
T ss_dssp             EEEEEECTTCC--EEEEETT-EEEEECCTTSCCE-EECCCTTCTT------SCSCSCEEEEEECTTCCE-E-EEESSSEE
T ss_pred             EEEEEEcCCCC--EEEEeCC-ceeEEecCCCcEE-EEEcCCCCcC------cCCcCeEEEEEEcCCCCE-E-EEeCCccc
Confidence            88888888886  4566644 5778886653211 0000000000      012346888888888873 3 34455643


Q ss_pred             e
Q psy4578         855 Q  855 (860)
Q Consensus       855 r  855 (860)
                      .
T Consensus       302 ~  302 (758)
T 3ott_A          302 L  302 (758)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=83.46  E-value=13  Score=38.56  Aligned_cols=153  Identities=12%  Similarity=0.181  Sum_probs=72.8

Q ss_pred             CCcEEEEEeCC--------CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCC
Q psy4578         633 HESLFGSVADD--------QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYD  704 (860)
Q Consensus       633 ~~~~lasgs~D--------G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~d  704 (860)
                      ++.+++.|+.+        ..+.+||..+.. ...+..+........++.+   +..+++.|+.+..         ....
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~---------~~~~  164 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFK-WGESDPLPYVVYGHTVLSH---MDLVYVIGGKGSD---------RKCL  164 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE---TTEEEEECCBCTT---------SCBC
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCc-EeECCCCCCcccceeEEEE---CCEEEEEeCCCCC---------Cccc
Confidence            56777777632        358888887642 1222221111111222222   3346777765211         1223


Q ss_pred             CcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC-----cEEEEeCCCCceeeE-EeccCCCceEEE
Q psy4578         705 QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK-----TVALWDLRNLKLKLH-SFESHKDEIFQV  778 (860)
Q Consensus       705 g~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg-----~I~IWDl~~~~~~~~-~~~~h~~~V~~l  778 (860)
                      ..+.+||..+... ..+..+........++.+  ++. +++.|+.++     .+.+||..+...... ...........+
T Consensus       165 ~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  240 (315)
T 4asc_A          165 NKMCVYDPKKFEW-KELAPMQTARSLFGATVH--DGR-IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV  240 (315)
T ss_dssp             CCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTE-EEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             ceEEEEeCCCCeE-EECCCCCCchhceEEEEE--CCE-EEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence            4588888876521 111112111122223333  344 677777654     488999988764211 111111112222


Q ss_pred             EEcCCCCCEEEEEECC--------------CcEEEEECCCC
Q psy4578         779 QWSPHNETILASSGTD--------------RRLHVWDLSKI  805 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~D--------------g~I~iWdl~~~  805 (860)
                      .+  ++ .+++.||.+              ..+.+||+.+.
T Consensus       241 ~~--~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          241 SL--VG-TLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             EE--TT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             EE--CC-EEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            22  34 467777753              24677887763

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=83.15  E-value=9  Score=44.52  Aligned_cols=84  Identities=10%  Similarity=0.017  Sum_probs=48.1

Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCC-CceEEEEEc
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK-DEIFQVQWS  781 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~-~~V~~l~fs  781 (860)
                      ..|.+..||+.++   +.+..... .....+-.....+. +++.|+.||.++.||.++++. +-.+.... ....-+.|.
T Consensus       451 ~~G~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~tagg-~vf~gt~dg~l~A~D~~tG~~-lW~~~l~~g~~~~P~~y~  524 (599)
T 1w6s_A          451 GLGQIKAYNAITG---DYKWEKME-RFAVWGGTMATAGD-LVFYGTLDGYLKARDSDTGDL-LWKFKIPSGAIGYPMTYT  524 (599)
T ss_dssp             CCEEEEEECTTTC---CEEEEEEE-SSCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEE
T ss_pred             CcCeEEEEECCCC---CEEeEecC-CCCccCcceEecCC-EEEEECCCCeEEEEECCCCCE-EEEeeCCCCcEeccEEEE
Confidence            3578999999987   33333321 11111111122345 466789999999999999987 55554222 222235556


Q ss_pred             CCCCCEEEEEE
Q psy4578         782 PHNETILASSG  792 (860)
Q Consensus       782 p~g~~lL~tgs  792 (860)
                      .+|+.++++.+
T Consensus       525 ~~G~qyv~~~~  535 (599)
T 1w6s_A          525 HKGTQYVAIYY  535 (599)
T ss_dssp             ETTEEEEEEEE
T ss_pred             eCCEEEEEEEc
Confidence            67765444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	860
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-23
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-21
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-15
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	9e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	7e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-05

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 99.4 bits (246), Expect = 4e-23
 Identities = 32/173 (18%), Positives = 54/173 (31%), Gaps = 23/173 (13%)

Query: 629 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA 688
                  LF S A D    +WD R         T   H +++N + F P      ATGS 
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVRE---GMCRQTFTGHESDINAICFFPNGNA-FATGSD 246

Query: 689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS 748
           D T                        +    +++ D     +  +SF+      L  G 
Sbjct: 247 DAT----------------CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL-LLAGY 289

Query: 749 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
            D    +WD             H + +  +  +  +   +A+   D  L +W+
Sbjct: 290 DDFNCNVWDALKADR-AGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.3 bits (199), Expect = 4e-17
 Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 21/152 (13%)

Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL-WDLRN 760
             D    +WD R         T   H +++N + F P      ATGS D T  L     +
Sbjct: 203 ACDASAKLWDVRE---GMCRQTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRAD 258

Query: 761 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 820
            +L  +S ++    I  V +S  +  +L +   D   +VWD  K               +
Sbjct: 259 QELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALK--------------AD 303

Query: 821 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
              +  GH  ++S      +   V  + S D+
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVA-TGSWDS 334

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (126), Expect = 6e-08
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 6/104 (5%)

Query: 688 ADKTQFEVEEEEEENYDQKLMIWDTRSHNVS----KPSHTVDAHTAEVNCLSFNPYSEYI 743
           A++ + ++ +  +   D  L         V     +   T+  H A++  + +   S   
Sbjct: 11  AEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRL- 69

Query: 744 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 787
           L + S D  + +WD      K+H+       +    ++P    +
Sbjct: 70  LVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSGNYV 112

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 7e-07
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL 683
           +  V++      L  +  DD    +WD      +  +  +  H   V+CL         +
Sbjct: 273 ITSVSFSK-SGRLLLAGYDDFNCNVWDALK---ADRAGVLAGHDNRVSCLGVTDDGMA-V 327

Query: 684 ATGSADKT 691
           ATGS D  
Sbjct: 328 ATGSWDSF 335

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.6 bits (101), Expect = 6e-05
 Identities = 19/222 (8%), Positives = 52/222 (23%), Gaps = 40/222 (18%)

Query: 658 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT----QFEVEEEEEENYDQKLMIWDTR 713
           +   T+  H A++  + +   S   L + S D            +      +   +    
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 714 -SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHK 772
            + + +  +     +   +  L     +  +    +               ++ +     
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 773 DEIFQ-------------------VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED 813
                                         +  +  S   D    +WD+ +         
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--------- 215

Query: 814 AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
                        GH + I+   + PN      + S+D   +
Sbjct: 216 -----GMCRQTFTGHESDINAICFFPNGNA-FATGSDDATCR 251

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.3 bits (230), Expect = 3e-21
 Identities = 30/173 (17%), Positives = 71/173 (41%), Gaps = 13/173 (7%)

Query: 633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ 692
             +L  S ++DQ + +W   +    +    +  H   V C+S+ P S Y   + +     
Sbjct: 154 DGTLIASCSNDQTVRVWVVATK---ECKAELREHRHVVECISWAPESSYSSISEATGSET 210

Query: 693 FEVEEEEEENY----DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS 748
            +  +          D+ + +WD  +        T+  H   V  + F+   ++I  + +
Sbjct: 211 KKSGKPGPFLLSGSRDKTIKMWDVST---GMCLMTLVGHDNWVRGVLFHSGGKFI-LSCA 266

Query: 749 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
            DKT+ +WD +N +  + +  +H+  +  + +       + +   D+ + VW+
Sbjct: 267 DDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.9 bits (198), Expect = 4e-17
 Identities = 45/286 (15%), Positives = 92/286 (32%), Gaps = 58/286 (20%)

Query: 586 LNFFKQGYFKGTHHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQK 645
           ++F   G    +   +  + L +    +  + +      +     + +     S + D+ 
Sbjct: 65  ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124

Query: 646 LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQ 705
           + +W+ ++        T   H   V  +  N     I A+ S D+T              
Sbjct: 125 IKMWEVQTG---YCVKTFTGHREWVRMVRPNQDGTLI-ASCSNDQT-------------- 166

Query: 706 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-------------------ILAT 746
            + +W   +    +    +  H   V C+S+ P S Y                    L +
Sbjct: 167 -VRVWVVATK---ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222

Query: 747 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 806
           GS DKT+ +WD+      L +   H + +  V +       + S   D+ L VWD     
Sbjct: 223 GSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKN-- 278

Query: 807 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
                          +     H   ++   ++   P+V+ + S D 
Sbjct: 279 ------------KRCMKTLNAHEHFVTSLDFHKTAPYVV-TGSVDQ 311

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.0 bits (193), Expect = 2e-16
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 23/133 (17%)

Query: 625 IDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 684
            +            S + D+ + +WD  +        T+  H   V  + F+   ++I  
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVST---GMCLMTLVGHDNWVRGVLFHSGGKFI-L 263

Query: 685 TGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL 744
           + + DKT               L +WD ++    +   T++AH   V  L F+  + Y +
Sbjct: 264 SCADDKT---------------LRVWDYKN---KRCMKTLNAHEHFVTSLDFHKTAPY-V 304

Query: 745 ATGSADKTVALWD 757
            TGS D+TV +W+
Sbjct: 305 VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.6 bits (153), Expect = 2e-11
 Identities = 36/253 (14%), Positives = 83/253 (32%), Gaps = 71/253 (28%)

Query: 649 WDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLM 708
           W  R        + +  H + V  + F+P     + + S D T               + 
Sbjct: 3   WIPRP----PEKYALSGHRSPVTRVIFHPVFSV-MVSASEDAT---------------IK 42

Query: 709 IWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY-------------------------- 742
           +WD  +        T+  HT  V  +SF+   +                           
Sbjct: 43  VWDYET---GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG 99

Query: 743 ---------------ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 787
                           + + S DKT+ +W+++     + +F  H++ +  V+ +  + T+
Sbjct: 100 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQ-DGTL 157

Query: 788 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW---- 843
           +AS   D+ + VW ++    +    +       + +      + IS+ + +  +      
Sbjct: 158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 217

Query: 844 -VICSVSEDNIMQ 855
             + S S D  ++
Sbjct: 218 PFLLSGSRDKTIK 230

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 2e-10
 Identities = 41/269 (15%), Positives = 81/269 (30%), Gaps = 63/269 (23%)

Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
            V +H    S+  S ++D  + +WD  +        T+  HT  V  +SF+   + + + 
Sbjct: 22  RVIFHP-VFSVMVSASEDATIKVWDYET---GDFERTLKGHTDSVQDISFDHSGKLLASC 77

Query: 686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVS-----------------------KPSH 722
            +    +    +  E          +  S ++                            
Sbjct: 78  SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 137

Query: 723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW-- 780
           T   H   V  +  N     I A+ S D+TV +W +   + K      H+  +  + W  
Sbjct: 138 TFTGHREWVRMVRPNQDGTLI-ASCSNDQTVRVWVVATKECK-AELREHRHVVECISWAP 195

Query: 781 -----------------SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 823
                            S      L S   D+ + +WD+S                  L 
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST--------------GMCLM 241

Query: 824 IHGGHTAKISDFSWNPNEPWVICSVSEDN 852
              GH   +    ++    +++ S ++D 
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFIL-SCADDK 269

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHT 662
           +   +  T   +  L+     +  V +H        S ADD+ L +WD ++    +   T
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKN---KRCMKT 284

Query: 663 VDAHTAEVNCLSFNPYSEYILATGSADKT 691
           ++AH   V  L F+  + Y + TGS D+T
Sbjct: 285 LNAHEHFVTSLDFHKTAPY-VVTGSVDQT 312

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.1 bits (232), Expect = 5e-21
 Identities = 33/186 (17%), Positives = 67/186 (36%), Gaps = 18/186 (9%)

Query: 629 WHLLHESLFGSVADDQKLMIWDTRS----HNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 684
                     + + D+ + +WD+ +      +   + +   H   V  + F    +  + 
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VV 270

Query: 685 TGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL 744
           +GS D++   V+    +N + K       S        T   H   V  ++     EYI 
Sbjct: 271 SGSLDRS---VKLWNLQNANNKSDSKTPNSG---TCEVTYIGHKDFVLSVATTQNDEYI- 323

Query: 745 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-----NETILASSGTDRRLHV 799
            +GS D+ V  WD ++    L   + H++ +  V  +          + A+   D +  +
Sbjct: 324 LSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

Query: 800 WDLSKI 805
           W   KI
Sbjct: 383 WKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 8e-12
 Identities = 37/270 (13%), Positives = 92/270 (34%), Gaps = 51/270 (18%)

Query: 627 VAWHLLHESLFGSVADDQKLMIWDTRSHNV---------------SKPSHTVDAHTAEVN 671
           V +   ++  + +   ++   ++     ++               +  + +  +    + 
Sbjct: 68  VKFS--NDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR 125

Query: 672 CLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEV 731
            + F+P  +++ ATG+ D+     + E  +                  PS       +  
Sbjct: 126 SVCFSPDGKFL-ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 184

Query: 732 NCL-----------------------SFNPYSEYILATGSADKTVALWDLRN------LK 762
             +                       + +P     +A GS D+ V +WD         L 
Sbjct: 185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 244

Query: 763 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 822
            +  S   HKD ++ V ++   ++ + S   DR + +W+L     +  ++    G  E+ 
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303

Query: 823 FIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
           +I   H   +   +   N+ +++ S S+D 
Sbjct: 304 YIG--HKDFVLSVATTQNDEYIL-SGSKDR 330

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.0 bits (154), Expect = 3e-11
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 34/150 (22%)

Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAE---------VNCLSFN 676
            V +         S + D+ + +W+ ++ N    S T ++ T E         V  ++  
Sbjct: 259 SVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317

Query: 677 PYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF 736
              EYI  +GS D+                ++ WD +S     P   +  H   V  ++ 
Sbjct: 318 QNDEYI-LSGSKDRG---------------VLFWDKKS---GNPLLMLQGHRNSVISVAV 358

Query: 737 NPYSEY-----ILATGSADKTVALWDLRNL 761
              S       + ATGS D    +W  + +
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.7 bits (135), Expect = 5e-09
 Identities = 17/122 (13%), Positives = 40/122 (32%), Gaps = 9/122 (7%)

Query: 733 CLSFNPYSEYILATGSADKTVALWDL---RNLKLKLHSFESHKDEIFQVQWSPHNETILA 789
            L  +  S         +    L++    R + ++LH    H   +  V++S   E +  
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYL-- 77

Query: 790 SSGTDRRLHVWDLSKIGEEQSTED----AEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 845
           ++G ++   V+ +S         D     +D               I    ++P+  ++ 
Sbjct: 78  ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 846 CS 847
             
Sbjct: 138 TG 139

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 4e-07
 Identities = 40/256 (15%), Positives = 84/256 (32%), Gaps = 52/256 (20%)

Query: 641 ADDQKLMIWD-TRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE 699
             +   ++++      +    H    HT+ V C+ F+   EY LATG  +KT       +
Sbjct: 35  QTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSD 92

Query: 700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR 759
                +            +  + +  +    +  + F+P  +++ ATG+ D+ + +WD+ 
Sbjct: 93  GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL-ATGAEDRLIRIWDIE 151

Query: 760 NLKLKLHSFESHK----------------------------------------DEIFQVQ 779
           N K+ +      +                                        D +  V 
Sbjct: 152 NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA 211

Query: 780 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 839
            SP +   +A+   DR + VWD       +  +   +          GH   +    +  
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE-------SGTGHKDSVYSVVFTR 264

Query: 840 NEPWVICSVSEDNIMQ 855
           +   V+ S S D  ++
Sbjct: 265 DGQSVV-SGSLDRSVK 279

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.4 bits (186), Expect = 3e-15
 Identities = 26/221 (11%), Positives = 64/221 (28%), Gaps = 46/221 (20%)

Query: 661 HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKP 720
           +   AH A++  +S          + S D                 L +WD +  +   P
Sbjct: 8   NAGKAHDADIFSVSACNS---FTVSCSGDGY---------------LKVWDNKLLDNENP 49

Query: 721 SHTVDA---------HTAEVNCLSFNPYSEYILATGSADKTVALWDLRN---------LK 762
                +         H   +  +  + +   ++AT S    +  + +            K
Sbjct: 50  KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 109

Query: 763 LKLHSFESHKDEIFQVQWSPHNET----ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 818
           L L   +  K   + ++W   N+      L ++      ++W      +E ++      P
Sbjct: 110 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 169

Query: 819 ----PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
                  +      +   +    +     +I +   +  +Q
Sbjct: 170 TLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQ 208

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 9e-11
 Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 12/195 (6%)

Query: 627 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 686
           V        L  +  ++  + I +  +        +  +     N +    +S       
Sbjct: 190 VDIS--ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 687 SADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 746
            A  +         E    + +   +   + S+ S    AH++ V  LSFN   E +  +
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-CS 306

Query: 747 GSADKTVALWDLRNLKLKLHSFESHKDEI----FQVQWSPHNETILASSGTDRRLHVWDL 802
              D  +  WD++  +  + +   H D+I      +    H ++ LA  G      V  L
Sbjct: 307 AGWDGKLRFWDVKTKER-ITTLNMHCDDIEIEEDILAVDEHGDS-LAEPGVF---DVKFL 361

Query: 803 SKIGEEQSTEDAEDG 817
            K        D  + 
Sbjct: 362 KKGWRSGMGADLNES 376

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 3e-13
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 36/211 (17%)

Query: 642 DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE 701
            D+ + +WD  S         +  H A VN + F+        + S D+T          
Sbjct: 113 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV---SASGDRT---------- 159

Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 761
                + +W+T +    +   T++ H   + CL +      ++ +GS+D T+ LWD+   
Sbjct: 160 -----IKVWNTSTC---EFVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIECG 208

Query: 762 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 821
                     +     V+    +   + S   D ++ VWDL    + ++           
Sbjct: 209 ACLRV----LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA-----GTLC 259

Query: 822 LFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
           L     H+ ++    ++      I S S D+
Sbjct: 260 LRTLVEHSGRVFRLQFDEF---QIVSSSHDD 287

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (164), Expect = 7e-13
 Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 38/181 (20%)

Query: 629 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA 688
                +    S + D+ + +W+T +    +   T++ H   + CL +      ++ +GS+
Sbjct: 143 VVDFDDKYIVSASGDRTIKVWNTSTC---EFVRTLNGHKRGIACLQYRDR---LVVSGSS 196

Query: 689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS 748
           D T               + +WD            +         +    +    + +G+
Sbjct: 197 DNT---------------IRLWDIECGAC------LRVLEGHEELVRCIRFDNKRIVSGA 235

Query: 749 ADKTVALWDLRNLK--------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 800
            D  + +WDL            L L +   H   +F++Q+       + SS  D  + +W
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIW 292

Query: 801 D 801
           D
Sbjct: 293 D 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 7e-10
 Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 30/137 (21%)

Query: 627 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATG 686
           +A     + L  S + D  + +WD            +         +    +    + +G
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGAC------LRVLEGHEELVRCIRFDNKRIVSG 234

Query: 687 SADKTQFEVEEEEEENYDQKLMIWDTRSHNV------SKPSHTVDAHTAEVNCLSFNPYS 740
           + D                 + +WD  +         +    T+  H+  V  L F+ + 
Sbjct: 235 AYDGK---------------IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF- 278

Query: 741 EYILATGSADKTVALWD 757
              + + S D T+ +WD
Sbjct: 279 --QIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 1e-08
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 715 HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE 774
           H++ +  H     +  V CL ++      + +G  D T+ +WD   L+        H   
Sbjct: 3   HSLQR-IHCRSETSKGVYCLQYDDQ---KIVSGLRDNTIKIWDKNTLEC-KRILTGHTGS 57

Query: 775 IFQVQWSPH 783
           +  +Q+   
Sbjct: 58  VLCLQYDER 66

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 4e-05
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 22/86 (25%)

Query: 654 HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR 713
           H++ +  H     +  V CL ++      + +G  D T               + IWD  
Sbjct: 3   HSLQR-IHCRSETSKGVYCLQYDD---QKIVSGLRDNT---------------IKIWDKN 43

Query: 714 SHNVSKPSHTVDAHTAEVNCLSFNPY 739
           +    +    +  HT  V CL ++  
Sbjct: 44  TL---ECKRILTGHTGSVLCLQYDER 66

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 17/83 (20%)

Query: 764 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 823
           ++H        ++ +Q+   ++  + S   D  + +WD +                E   
Sbjct: 7   RIHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNT--------------LECKR 49

Query: 824 IHGGHTAKISDFSWNPNEPWVIC 846
           I  GHT  +    ++        
Sbjct: 50  ILTGHTGSVLCLQYDERVIITGS 72

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 1e-12
 Identities = 43/227 (18%), Positives = 76/227 (33%), Gaps = 38/227 (16%)

Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
            V           S A D  + +WD  +       HT+  HT  V  L F+      + +
Sbjct: 139 AVRCVQYDGRRVVSGAYDFMVKVWDPETE---TCLHTLQGHTNRVYSLQFDGI---HVVS 192

Query: 686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
           GS D +               + +WD  +       HT+  H +  + +        IL 
Sbjct: 193 GSLDTS---------------IRVWDVETG---NCIHTLTGHQSLTSGMELKDN---ILV 231

Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 805
           +G+AD TV +WD++  +        +K +        +   ++ SS  D  + +WDL   
Sbjct: 232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD-DGTVKLWDLKT- 289

Query: 806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
           GE        +         GG    +     +  +  V    S + 
Sbjct: 290 GEFIRNLVTLE--------SGGSGGVVWRIRASNTKL-VCAVGSRNG 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 2e-09
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 710 WDTRSHNVSKPSHTVDAHTAEVN-CLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF 768
           W        K    +  H   V  CL F       + +GS D T+ +W     K  L + 
Sbjct: 1   WRRGEL---KSPKVLKGHDDHVITCLQFCGN---RIVSGSDDNTLKVWSAVTGKC-LRTL 53

Query: 769 ESHKDEIFQVQWSPH 783
             H   ++  Q   +
Sbjct: 54  VGHTGGVWSSQMRDN 68

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 5e-08
 Identities = 40/250 (16%), Positives = 69/250 (27%), Gaps = 42/250 (16%)

Query: 635 SLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP----------------- 677
           +   S +DD  L +W   +    K   T+  HT  V                        
Sbjct: 28  NRIVSGSDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA 84

Query: 678 -----YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVN 732
                       T +        +     + D  L +WD       +  H +  H A V 
Sbjct: 85  ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD---IETGQCLHVLMGHVAAVR 141

Query: 733 CLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 792
           C     Y    + +G+ D  V +WD       LH+ + H     +V     +   + S  
Sbjct: 142 C---VQYDGRRVVSGAYDFMVKVWDPETETC-LHTLQGHT---NRVYSLQFDGIHVVSGS 194

Query: 793 TDRRLHVWDLSKIGEEQSTEDAEDG-------PPELLFIHGGHTAKISDFSWNPNEPWVI 845
            D  + VWD+       +    +            L+  +   T KI D         + 
Sbjct: 195 LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 254

Query: 846 CSVSEDNIMQ 855
                 + + 
Sbjct: 255 GPNKHQSAVT 264

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 25/91 (27%)

Query: 649 WDTRSHNVSKPSHTVDAHTAEVN-CLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKL 707
           W        K    +  H   V  CL F       + +GS D T               L
Sbjct: 1   WRRGEL---KSPKVLKGHDDHVITCLQFCGN---RIVSGSDDNT---------------L 39

Query: 708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP 738
            +W   +    K   T+  HT  V       
Sbjct: 40  KVWSAVTG---KCLRTLVGHTGGVWSSQMRD 67

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 15/91 (16%), Positives = 20/91 (21%), Gaps = 17/91 (18%)

Query: 756 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 815
           W    LK      + H D +            + S   D  L VW               
Sbjct: 1   WRRGELKSP-KVLKGHDDHVITC-LQF-CGNRIVSGSDDNTLKVWSAVT----------- 46

Query: 816 DGPPELLFIHGGHTAKISDFSWNPNEPWVIC 846
               + L    GHT  +       N      
Sbjct: 47  ---GKCLRTLVGHTGGVWSSQMRDNIIISGS 74

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.0 bits (164), Expect = 1e-12
 Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 18/133 (13%)

Query: 670 VNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTA 729
           ++C ++N      +A    +                 + I++   +      H +  H  
Sbjct: 10  ISCHAWNKDRTQ-IAICPNNHE---------------VHIYEKSGNKW-VQVHELKEHNG 52

Query: 730 EVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 789
           +V  + + P S   + T   D+   +W L+    K        +   +      NE   A
Sbjct: 53  QVTGVDWAPDSNR-IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA 111

Query: 790 SSGTDRRLHVWDL 802
                R + +   
Sbjct: 112 VGSGSRVISICYF 124

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 27/235 (11%), Positives = 64/235 (27%), Gaps = 26/235 (11%)

Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
             AW+    +      ++ ++ I++   +      H +  H  +V  + + P S   + T
Sbjct: 12  CHAWNK-DRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSNR-IVT 68

Query: 686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
              D+                  +W  +          +  + A           ++   
Sbjct: 69  CGTDRN---------------AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA-- 111

Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQV--QWSPHNETILASSGTDRRLHVWDLS 803
            GS  + +++                K     V       N  +LA+   D +  ++   
Sbjct: 112 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171

Query: 804 KIGEEQSTEDAEDGP----PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
               E+       G      EL+F        +    ++ N   V     +  + 
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC 226

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.4 bits (108), Expect = 9e-06
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 29/141 (20%)

Query: 629 WHLLHESLFGSVADDQ-KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS 687
             +   SL  +  D    L  +D+ +  +S                  +   +      +
Sbjct: 250 TFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRL-------------DVPKQSSQRGLT 296

Query: 688 ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY---IL 744
           A +          +N D+K     + +      S     H   V+ +S     +      
Sbjct: 297 ARERF--------QNLDKKASSEGSAAAGAGLDS----LHKNSVSQISVLSGGKAKCSQF 344

Query: 745 ATGSADKTVALWDLRNLKLKL 765
            T   D  +++WD+R+L+  L
Sbjct: 345 CTTGMDGGMSIWDVRSLESAL 365

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 24/209 (11%), Positives = 55/209 (26%), Gaps = 29/209 (13%)

Query: 598 HHIEEVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS 657
                  +       ++          +       + S    V+ D  + + D       
Sbjct: 177 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 236

Query: 658 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV 717
               +    T  +  ++F   S  ++A G                    L  +D+ +  +
Sbjct: 237 ATLAS---ETLPLLAVTFITESS-LVAAGHDCFP--------------VLFTYDSAAGKL 278

Query: 718 SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ 777
           S          +    L+            + DK  +          L S   HK+ + Q
Sbjct: 279 SFGGRLDVPKQSSQRGLT------ARERFQNLDKKASSEGSAAAGAGLDSL--HKNSVSQ 330

Query: 778 VQWSP---HNETILASSGTDRRLHVWDLS 803
           +          +   ++G D  + +WD+ 
Sbjct: 331 ISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 31/224 (13%), Positives = 58/224 (25%), Gaps = 20/224 (8%)

Query: 629 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA 688
               +  L  + + D K  I+      V +        +           S         
Sbjct: 148 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV 207

Query: 689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS 748
             +          ++D  + + D           +    T  +  ++F   S  ++A G 
Sbjct: 208 CFSANG-SRVAWVSHDSTVCLADADKKMAVATLAS---ETLPLLAVTFITESS-LVAAGH 262

Query: 749 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 808
               V L+   +   KL SF    D           ++         R    D     E 
Sbjct: 263 DCFPV-LFTYDSAAGKL-SFGGRLD--------VPKQSSQRGLTARERFQNLDKKASSEG 312

Query: 809 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
            +   A      L  +H    ++IS  S    +    C+   D 
Sbjct: 313 SAAAGAG-----LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 65.7 bits (158), Expect = 7e-12
 Identities = 17/186 (9%), Positives = 45/186 (24%), Gaps = 23/186 (12%)

Query: 629 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPS----HTVDAHTAEVNCLSFNPYSEYILA 684
                      ++        D    N S         +       N     P S     
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT-SE 243

Query: 685 TGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL 744
            G  D                             +    +++     +      ++ Y  
Sbjct: 244 AGEYDLNDMYKR-----------SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY-Y 291

Query: 745 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 804
                   +  +D++  K+        K+ +  ++ S  +   +     D +++ + L K
Sbjct: 292 QGAPEKGVLLKYDVKTRKV-----TEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEK 345

Query: 805 IGEEQS 810
             +E++
Sbjct: 346 PEDERT 351

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 9e-12
 Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 727 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 786
           H + V  L F    ++   +   D  +  W          S       +     S  ++ 
Sbjct: 264 HESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISV-DDK 319

Query: 787 ILASSGTDRRLHVWDL 802
            + +   D++  V+++
Sbjct: 320 YIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 1e-09
 Identities = 20/130 (15%), Positives = 34/130 (26%), Gaps = 21/130 (16%)

Query: 629 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA 688
              L     G               H      + +  H + V  L F    ++   +   
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW-FVSTGK 285

Query: 689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS 748
           D                 L  W T        S      ++ V     +   +YI  TGS
Sbjct: 286 DNL---------------LNAWRTPYGASIFQSK----ESSSVLSCDISVDDKYI-VTGS 325

Query: 749 ADKTVALWDL 758
            DK   ++++
Sbjct: 326 GDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 6e-06
 Identities = 16/129 (12%), Positives = 38/129 (29%), Gaps = 21/129 (16%)

Query: 658 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV 717
           +  +T++ H   V  ++ +  + + + TG                    + +WD      
Sbjct: 43  RQINTLN-HGEVVCAVTISNPTRH-VYTGG----------------KGCVKVWDISHPGN 84

Query: 718 SKPSHTVD--AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEI 775
             P   +D       +      P     L  G    T+++WDL     ++ +  +     
Sbjct: 85  KSPVSQLDCLNRDNYIRSCKLLPDGCT-LIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143

Query: 776 FQVQWSPHN 784
                   +
Sbjct: 144 CYALAISPD 152

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 16/143 (11%), Positives = 41/143 (28%), Gaps = 20/143 (13%)

Query: 710 WDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE 769
                             T+++  L + P  E++     +     L   +  K   +   
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK---YQLH 262

Query: 770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 829
            H+  +  ++++        S+G D  L+ W     G                      +
Sbjct: 263 LHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPY-GA--------------SIFQSKES 306

Query: 830 AKISDFSWNPNEPWVICSVSEDN 852
           + +     + ++ + I + S D 
Sbjct: 307 SSVLSCDISVDDKY-IVTGSGDK 328

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 13/100 (13%)

Query: 748 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 807
             D  +     R+ + ++++  +H + +  V  S     +   +G    + VWD+S  G 
Sbjct: 29  PPDALIGPGIPRHAR-QINTL-NHGEVVCAVTISNPTRHVY--TGGKGCVKVWDISHPGN 84

Query: 808 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS 847
           +          P            I      P+   +I  
Sbjct: 85  KS---------PVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.5 bits (155), Expect = 2e-11
 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS 767
                R  + +  S     H   ++ ++    S+ IL +GS +    +++LR+ KL   +
Sbjct: 261 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHAN 319

Query: 768 FESHKDEIFQVQWSPHNETILASSGTDRR--LHVWDLS 803
                D+I+ V +    +T++A+   D +  L + D S
Sbjct: 320 ILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.1 bits (146), Expect = 2e-10
 Identities = 32/145 (22%), Positives = 50/145 (34%), Gaps = 24/145 (16%)

Query: 661 HTVDAHTAEV-NCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSK 719
            T+  H   V  CL F       + TG+ DK                + ++D+ +    K
Sbjct: 6   TTLRGHMTSVITCLQFEDN---YVITGADDKM---------------IRVYDSINK---K 44

Query: 720 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ 779
               +  H   V  L +      IL +GS D+TV +WD++           +        
Sbjct: 45  FLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 102

Query: 780 WSPHNETILASSGTDRRLHVWDLSK 804
               N   + +   D  LHVW L K
Sbjct: 103 VEYKNIKYIVTGSRDNTLHVWKLPK 127

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 24/214 (11%), Positives = 53/214 (24%), Gaps = 22/214 (10%)

Query: 633 HESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ 692
            ++   + ADD+ + ++D+ +    K    +  H   V  L +      IL +GS D+  
Sbjct: 22  EDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDR-- 74

Query: 693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 752
                           +                 ++           +   + TGS D T
Sbjct: 75  ---------------TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119

Query: 753 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 812
           + +W L          E H   +       +   +    G    +             + 
Sbjct: 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179

Query: 813 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 846
           D      ++  +   +                  
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 213

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 10/87 (11%), Positives = 29/87 (33%), Gaps = 16/87 (18%)

Query: 766 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 825
             F  H   +  +     ++ IL S G++ + ++++L       +               
Sbjct: 275 RKFSYHHTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGKLVHANIL------------ 321

Query: 826 GGHTAKISDFSWNPNEPWVICSVSEDN 852
                +I   ++      ++ +V +D 
Sbjct: 322 -KDADQIWSVNFKGK--TLVAAVEKDG 345

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 7/69 (10%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 625 IDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 684
             +    + +++      + +  I++ RS  +      +     ++  ++F    + ++A
Sbjct: 285 SAITTFYVSDNIL-VSGSENQFNIYNLRSGKLVH--ANILKDADQIWSVNFKG--KTLVA 339

Query: 685 TGSADKTQF 693
               D   F
Sbjct: 340 AVEKDGQSF 348

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.5 bits (155), Expect = 2e-11
 Identities = 16/136 (11%), Positives = 36/136 (26%), Gaps = 3/136 (2%)

Query: 725 DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRN--LKLKLHSFESHKDEIFQVQWSP 782
            A    ++ +   P     L   S D ++ ++        + L     +K  +    +  
Sbjct: 8   QAPKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 783 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 842
           + +  +        +   DL      Q+  + E           G    I+       E 
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 843 WVICSVSEDNIMQKPF 858
               +  +  I  K  
Sbjct: 127 IDPRNYGDGVIAVKNL 142

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 5e-09
 Identities = 11/121 (9%), Positives = 29/121 (23%), Gaps = 16/121 (13%)

Query: 664 DAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHT 723
            A    ++ +   P     L   S D +               L ++       +     
Sbjct: 8   QAPKDYISDIKIIPSKSL-LLITSWDGS---------------LTVYKFDIQAKNVDLLQ 51

Query: 724 VDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 783
              +   + C +F   ++  +  G+    +   DL           +  +          
Sbjct: 52  SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG 111

Query: 784 N 784
           +
Sbjct: 112 D 112

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 2e-08
 Identities = 27/260 (10%), Positives = 65/260 (25%), Gaps = 35/260 (13%)

Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           D+      +SL    + D  L ++       +        +   + C +F   ++  +  
Sbjct: 16  DIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV 74

Query: 686 GSADKTQFEVEEEEEENYDQKLM------------------------------IWDTRSH 715
           G+      +V+     ++                                          
Sbjct: 75  GTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD 134

Query: 716 NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEI 775
            V    +    +T   N +     +   L  G  +  V  + L   +    + E    + 
Sbjct: 135 GVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY 194

Query: 776 FQVQW--SPHNETILASSGTDRRLHVWDL-SKIGEEQSTEDAEDGPPELLFIHGGHTAKI 832
                   P  +   A S  D R+ V     +  +  S++        L          +
Sbjct: 195 QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPV 254

Query: 833 SDFSWNPNEPWVICSVSEDN 852
           +   ++P     + +   D 
Sbjct: 255 NSIEFSPR-HKFLYTAGSDG 273

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 2e-08
 Identities = 25/183 (13%), Positives = 59/183 (32%), Gaps = 7/183 (3%)

Query: 629 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA 688
               + S      ++ ++  +          +        ++  ++  P  +   A  S 
Sbjct: 155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI 214

Query: 689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS 748
           D     V  E  ++           +    + +         VN + F+P     L T  
Sbjct: 215 DGR---VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAG 270

Query: 749 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 808
           +D  ++ W+L+  K K+ +F    +E   V+ +  ++ IL  + +D             E
Sbjct: 271 SDGIISCWNLQTRK-KIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTNAAIDQTIE 327

Query: 809 QST 811
            + 
Sbjct: 328 LNA 330

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 2e-07
 Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 12/88 (13%)

Query: 768 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 827
            ++ KD I  ++  P ++++L  +  D  L V+      +              L     
Sbjct: 7   EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVD-----------LLQSLR 54

Query: 828 HTAKISDFSWNPNEPWVICSVSEDNIMQ 855
           +   +   ++  N    I   +    + 
Sbjct: 55  YKHPLLCCNFIDNTDLQIYVGTVQGEIL 82

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 5e-05
 Identities = 16/165 (9%), Positives = 48/165 (29%), Gaps = 31/165 (18%)

Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 761
             + ++  +          +        ++  ++  P  +   A  S D  VA+    + 
Sbjct: 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226

Query: 762 KLK--------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 807
                                 +    +  +++SP     L ++G+D  +  W+L    +
Sbjct: 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQT-RK 284

Query: 808 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
           +                   +   +   + + N   ++C  + D+
Sbjct: 285 KIKN------------FAKFNEDSVVKIACSDN---ILCLATSDD 314

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.1 bits (146), Expect = 1e-10
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS 767
               T             +        +     E ++ATGS D  + ++ ++     + +
Sbjct: 194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA 253

Query: 768 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 801
             +HKD +  + W   +   L SSG D  +  W+
Sbjct: 254 LNAHKDGVNNLLWETPS--TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.7 bits (137), Expect = 1e-09
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 11/67 (16%)

Query: 719 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 778
           +   T+  H   +  L+ NP     L +GS D  +  W   +        + H + I  +
Sbjct: 4   EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS------MHQDHSNLIVSL 52

Query: 779 QWSPHNE 785
             S   E
Sbjct: 53  DNSKAQE 59

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 28/86 (32%)

Query: 658 KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNV 717
           +   T+  H   +  L+ NP     L +GS D                 +M W + S   
Sbjct: 4   EVLKTISGHNKGITALTVNP-----LISGSYDGR---------------IMEWSSSS--- 40

Query: 718 SKPSHTVDAHTAEVNCLSFNPYSEYI 743
                    H+  +  L  +   EY 
Sbjct: 41  -----MHQDHSNLIVSLDNSKAQEYS 61

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 639 SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT 691
           + + D  + I+  +     K    ++AH   VN L +       L +  AD  
Sbjct: 232 TGSLDTNIFIYSVKRP--MKIIKALNAHKDGVNNLLWET--PSTLVSSGADAC 280

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 5e-05
 Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 24/82 (29%)

Query: 765 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 824
           L +   H   I  +  +P     L S   D R+  W  S + +                 
Sbjct: 6   LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ----------------- 43

Query: 825 HGGHTAKISDFSWNPNEPWVIC 846
              H+  I     +  + +   
Sbjct: 44  --DHSNLIVSLDNSKAQEYSSI 63

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 15/87 (17%)

Query: 766 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 825
            +  S K            E ++A+   D  + ++ + +             P +++   
Sbjct: 208 INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR-------------PMKIIKAL 254

Query: 826 GGHTAKISDFSWNPNEPWVICSVSEDN 852
             H   +++  W       + S   D 
Sbjct: 255 NAHKDGVNNLLWETPS--TLVSSGADA 279

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.0 bits (143), Expect = 3e-10
 Identities = 13/125 (10%), Positives = 35/125 (28%), Gaps = 1/125 (0%)

Query: 722 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 781
                H   +  LS +   +  L +  A+  +  WD+          + H   I  ++ +
Sbjct: 6   QVRYGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 782 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 841
              +    S     ++     S +   ++  +     P  L +       ++    +   
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124

Query: 842 PWVIC 846
                
Sbjct: 125 YSHGK 129

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.1 bits (120), Expect = 2e-07
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-LH 766
           +I  + ++N                           LATGS D +V +W++       + 
Sbjct: 203 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 262

Query: 767 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 803
              +H            NET + S+G D  +  W++ 
Sbjct: 263 IKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.8 bits (114), Expect = 1e-06
 Identities = 15/141 (10%), Positives = 39/141 (27%), Gaps = 22/141 (15%)

Query: 661 HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKP 720
                H   +  LS +   +  L +  A+                 +  WD  +      
Sbjct: 6   QVRYGHNKAITALSSSADGKT-LFSADAEGH---------------INSWDIST---GIS 46

Query: 721 SHTV-DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ 779
           +    D H   +  +         L T S D  + +       +      ++K     + 
Sbjct: 47  NRVFPDVHATMITGIKTTSK--GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 104

Query: 780 WSPHNETILASSGTDRRLHVW 800
            +   +  +A +   + + ++
Sbjct: 105 LAVSADGDIAVAACYKHIAIY 125

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 7/56 (12%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL 758
            D  +++W+    +            + VN + +    E  + +   D  +  W++
Sbjct: 244 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 14/83 (16%)

Query: 765 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 824
                 H   I  +  S  +   L S+  +  ++ WD+S  G                  
Sbjct: 5   DQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDIST-GISNRV------------F 50

Query: 825 HGGHTAKISDFSWNPNEPWVICS 847
              H   I+             S
Sbjct: 51  PDVHATMITGIKTTSKGDLFTVS 73

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 1e-09
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 761
             D+K+  +D +S    K                    S+   AT  AD T+ +WD+   
Sbjct: 225 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK-FATVGADATIRVWDVTTS 283

Query: 762 K-LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
           K ++  + +  +    QV         + S   D  L+ ++L
Sbjct: 284 KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.2 bits (128), Expect = 3e-08
 Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 17/133 (12%)

Query: 626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT 685
           DV +         +V  D+K+  +D +S    K                    S+   AT
Sbjct: 210 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK-FAT 268

Query: 686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
             AD T               + +WD  +    +   T+D        +         + 
Sbjct: 269 VGADAT---------------IRVWDVTTSKCVQ-KWTLDKQQLGNQQVGVVATGNGRII 312

Query: 746 TGSADKTVALWDL 758
           + S D T+  ++L
Sbjct: 313 SLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 7e-08
 Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 9/123 (7%)

Query: 727 HTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-LHSFESH-KDEIFQVQWSP-H 783
                  LS++P +  I         V   D  + K+  +  F  H    +  V++SP  
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 784 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 843
               L S     ++ VW  +   E  S E                   ISD SW+     
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS------EFQVLAGPISDISWDFEGRR 129

Query: 844 VIC 846
           +  
Sbjct: 130 LCV 132

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 6e-06
 Identities = 14/177 (7%), Positives = 41/177 (23%), Gaps = 11/177 (6%)

Query: 627 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE-YILAT 685
           +++     ++         +   D     V          ++ V  + F+P      L +
Sbjct: 23  LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS 82

Query: 686 GSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA 745
           G             ++  +   +                      ++ +S++     +  
Sbjct: 83  GDESGKVIVWGWTFDKESNSVEVNVK----------SEFQVLAGPISDISWDFEGRRLCV 132

Query: 746 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
            G       ++   +    L     H   I              + G D  +  +  
Sbjct: 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG 189

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 21/152 (13%), Positives = 46/152 (30%), Gaps = 13/152 (8%)

Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 761
             D  ++ +       S    T     + V  + F+P S   + T  +D+ ++ +D ++ 
Sbjct: 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 238

Query: 762 KLKLHSFESHKDEIFQVQW-SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPE 820
           +   +  +  +     +   S  +    A+ G D  + VWD+                  
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV------------TTSKCV 286

Query: 821 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
             +                     I S+S D 
Sbjct: 287 QKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.7 bits (132), Expect = 8e-09
 Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL--KL 765
              D     V +     +   +              +A+ SADKT+ +W++  LK+   +
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276

Query: 766 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 802
                 +D+   + W+      L S   +  ++  + 
Sbjct: 277 PVGTRIEDQQLGIIWTKQ---ALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.8 bits (109), Expect = 6e-06
 Identities = 16/118 (13%), Positives = 30/118 (25%), Gaps = 16/118 (13%)

Query: 729 AEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 788
                L   P  + I        +V    + +L      +  H  +    + SP +    
Sbjct: 18  GTAVVLGNTPAGDKIQYC--NGTSVYTVPVGSLTD-TEIYTEHSHQTTVAKTSP-SGYYC 73

Query: 789 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 846
           AS      + +W            D       L       +  + D SW+     +  
Sbjct: 74  ASGDVHGNVRIW------------DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA 119

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 13/119 (10%), Positives = 27/119 (22%), Gaps = 22/119 (18%)

Query: 668 AEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAH 727
                L   P  + I                        +      S      +     H
Sbjct: 18  GTAVVLGNTPAGDKIQYCN-----------------GTSVYTVPVGS---LTDTEIYTEH 57

Query: 728 TAEVNCLSFNPYSEYILATGSADKTVALWDLR-NLKLKLHSFESHKDEIFQVQWSPHNE 785
           + +      +P   Y  A+G     V +WD      +   +       +  + W   ++
Sbjct: 58  SHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 115

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 9e-04
 Identities = 6/77 (7%), Positives = 19/77 (24%), Gaps = 4/77 (5%)

Query: 640 VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE 699
             +   +      S      +     H+ +      +P   Y  A+G         +  +
Sbjct: 34  YCNGTSVYTVPVGS---LTDTEIYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQ 89

Query: 700 EENYDQKLMIWDTRSHN 716
             +  +  +   +    
Sbjct: 90  TTHILKTTIPVFSGPVK 106

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 9/87 (10%), Positives = 26/87 (29%), Gaps = 14/87 (16%)

Query: 766 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 825
                             + T +AS+  D+ + +W+++   + + T          + + 
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKT----------IPVG 279

Query: 826 GGHTAKISDFSWNPNEPWVICSVSEDN 852
                +     W       + S+S + 
Sbjct: 280 TRIEDQQLGIIWTKQ---ALVSISANG 303

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 629 WHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT-AEVNCLSFNPYSEYILATGS 687
                 +   S + D+ + IW+  +    K   T+   T  E   L      +  L + S
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVAT---LKVEKTIPVGTRIEDQQLGIIWTKQA-LVSIS 300

Query: 688 ADKT 691
           A+  
Sbjct: 301 ANGF 304

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 23/158 (14%), Positives = 45/158 (28%), Gaps = 9/158 (5%)

Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 761
               KL++ DT    V K   T+             P      AT +  +++   DL   
Sbjct: 8   ARPDKLVVIDTEKMAVDK-VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG 66

Query: 762 KL----KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG 817
           +      L + E     +F    SP  +T+       R            + +     D 
Sbjct: 67  ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV----QPTRVALYDA 122

Query: 818 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 855
                        +I+  +W  +   +     + ++M 
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMD 160

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 17/142 (11%), Positives = 33/142 (23%), Gaps = 14/142 (9%)

Query: 625 IDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV---DAHTAEVNCLSFNPYSEY 681
            DV          G +A        D    + +     +   D  T E+          +
Sbjct: 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242

Query: 682 ILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE 741
             +T                     L  +D   +        V         ++ +    
Sbjct: 243 YFSTAVNPAKTRAF------GAYNVLESFDLEKN---ASIKRVP-LPHSYYSVNVSTDGS 292

Query: 742 YILATGSADKTVALWDLRNLKL 763
             +  G A   +A +D   L+ 
Sbjct: 293 T-VWLGGALGDLAAYDAETLEK 313

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 13/115 (11%), Positives = 30/115 (26%), Gaps = 10/115 (8%)

Query: 741 EYILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 799
              +   +    + + D   + + K+ +             +P      A+      L  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 800 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 854
            DL   GE     D       +  + G         + +P+   +    S   + 
Sbjct: 61  IDLVT-GETLGRIDLSTPEERVKSLFG--------AALSPDGKTLAIYESPVRLE 106

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 50.5 bits (119), Expect = 4e-07
 Identities = 14/120 (11%), Positives = 33/120 (27%), Gaps = 9/120 (7%)

Query: 734 LSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 793
            +     EY +   +    + + D+ +  +        K        +P N T    +  
Sbjct: 2   PALKAGHEY-MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 794 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 853
              ++  DL           +           G     +  F+ +P+   V  +V+    
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSV--------PGEVGRSMYSFAISPDGKEVYATVNPTQR 112

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 48.6 bits (114), Expect = 2e-06
 Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 7/110 (6%)

Query: 702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNL 761
           NY   L + D  S  V K S  +             P +       +    +   DL   
Sbjct: 15  NYPNNLHVVDVASDTVYK-SCVMP-DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC 72

Query: 762 KLKLH-----SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 806
           K   H             ++    SP  + + A+    +RL+   + K  
Sbjct: 73  KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.2 bits (118), Expect = 6e-07
 Identities = 18/150 (12%), Positives = 51/150 (34%), Gaps = 13/150 (8%)

Query: 640 VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE 699
                K+   D  S +       V+A T       + P     +A       +  +  ++
Sbjct: 212 PTYTGKIHQIDLSSGDAK-FLPAVEALTEAERADGWRPGGWQQVA-YHRALDRIYLLVDQ 269

Query: 700 EENY-----DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL-ATGSADKTV 753
            + +      + +++ D ++    +     +    E++ ++ +   + +L A  + DKT+
Sbjct: 270 RDEWRHKTASRFVVVLDAKTG---ERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTL 325

Query: 754 ALWDLRNLKLKLHSFESHKDEIFQVQWSPH 783
            + D  + +  L S          +  +  
Sbjct: 326 YIHDAESGEE-LRSVNQLGHGPQVITTADM 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 23/191 (12%), Positives = 58/191 (30%), Gaps = 10/191 (5%)

Query: 641 ADDQKLMIWDTRSHNVS--KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE 698
            D     +                       +N  +++  +   L   +      +++  
Sbjct: 166 RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDLS 224

Query: 699 EEENY---DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVAL 755
             +       + +    R+           A+   ++ +             +A + V +
Sbjct: 225 SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 284

Query: 756 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL-ASSGTDRRLHVWDLSKIGEEQSTEDA 814
            D +  +  L  FE   + I  +  S   + +L A S  D+ L++ D    GEE  + + 
Sbjct: 285 LDAKTGER-LAKFEMGHE-IDSINVSQDEKPLLYALSTGDKTLYIHDAES-GEELRSVNQ 341

Query: 815 EDGPPELLFIH 825
               P+++   
Sbjct: 342 LGHGPQVITTA 352

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 49.1 bits (115), Expect = 9e-07
 Identities = 7/65 (10%), Positives = 21/65 (32%), Gaps = 2/65 (3%)

Query: 740 SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 799
           S +     S    +++ D+ + K+   +             SP    +  ++     + +
Sbjct: 1   STFAYIANSESDNISVIDVTSNKV-TATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSI 58

Query: 800 WDLSK 804
            D + 
Sbjct: 59  IDTAT 63

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.1 bits (102), Expect = 4e-05
 Identities = 8/76 (10%), Positives = 21/76 (27%), Gaps = 10/76 (13%)

Query: 708 MIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHS 767
                     +K +  +     +   ++  P  + +    S   TV++ D     +    
Sbjct: 224 NTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT--- 279

Query: 768 FESHKDEIFQVQWSPH 783
                     V  +P+
Sbjct: 280 ------ATMAVGKNPY 289

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 10/106 (9%), Positives = 24/106 (22%), Gaps = 19/106 (17%)

Query: 679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP 738
           S +     S                   + + D  S+ V+    T+    +       +P
Sbjct: 1   STFAYIANSESDN---------------ISVIDVTSNKVTA---TIPVG-SNPMGAVISP 41

Query: 739 YSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 784
               +    +    V++ D     +          +   V      
Sbjct: 42  DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQ 87

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 47.5 bits (111), Expect = 3e-06
 Identities = 9/122 (7%), Positives = 32/122 (26%), Gaps = 4/122 (3%)

Query: 741 EYILATGSADKTVALWDL-RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 799
           + +       + + +W+L     L L        ++  +  SP    +      + R+  
Sbjct: 4   QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63

Query: 800 WDLSK---IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK 856
           + ++         +          +   H G    +  ++        +       ++  
Sbjct: 64  YRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV 123

Query: 857 PF 858
             
Sbjct: 124 VE 125

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 9/83 (10%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDL--RNL 761
            Q++ +W+         +  VD    +V  +  +P   Y+      +  V  + +   + 
Sbjct: 13  SQQIHVWNLNHEGALTLTQVVD-VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG 71

Query: 762 KLKLHSFESHKDEIFQVQWSPHN 784
            L   +  +    +  +      
Sbjct: 72  ALTFAAESALPGSLTHISTDHQG 94

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (111), Expect = 7e-06
 Identities = 19/153 (12%), Positives = 44/153 (28%), Gaps = 12/153 (7%)

Query: 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 763
             ++ + D  ++   +    +D   A V+    +    Y L     D  V + DL   + 
Sbjct: 41  AGQIALIDGSTY---EIKTVLDTGYA-VHISRLSASGRY-LFVIGRDGKVNMIDLWMKEP 95

Query: 764 K----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 819
                +      +           ++  +A +    +  + D   +  ++          
Sbjct: 96  TTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD 155

Query: 820 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
           E  +      A I     +   P  I +V E  
Sbjct: 156 EQEYHPEPRVAAILA---SHYRPEFIVNVKETG 185

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.5 bits (109), Expect = 1e-05
 Identities = 20/153 (13%), Positives = 41/153 (26%), Gaps = 12/153 (7%)

Query: 704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL 763
             ++ + D  S    K    +D   A V+    +    Y L     D  + + DL   + 
Sbjct: 41  AGQIALVDGDSK---KIVKVIDTGYA-VHISRMSASGRY-LLVIGRDARIDMIDLWAKEP 95

Query: 764 K----LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP 819
                +      +           +   +A +    +  + D   +  +Q          
Sbjct: 96  TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD 155

Query: 820 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 852
              +      A I     +   P  I +V E  
Sbjct: 156 TQTYHPEPRVAAI---IASHEHPEFIVNVKETG 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	860
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.94
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.93
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.92
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.91
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.91
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.87
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.86
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.86
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.86
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.84
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.84
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.84
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.83
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.81
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.8
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.71
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.71
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.7
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.67
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.65
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.63
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.61
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.6
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.55
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.52
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.51
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.45
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.45
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.39
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.39
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.37
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.18
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.17
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.07
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.02
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.91
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.75
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.62
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.58
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.56
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.56
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.55
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.44
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.39
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.35
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.32
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.31
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.28
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.24
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.1
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.99
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.92
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.88
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.77
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.74
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.68
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.58
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.57
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.52
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.33
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.13
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.97
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.93
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.63
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.38
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.24
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.99
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.48
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.2
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	91.72
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.16
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	90.96
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.68
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	89.63
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	89.59
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	86.63
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	85.72

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=5.9e-27  Score=250.97  Aligned_cols=214  Identities=24%  Similarity=0.374  Sum_probs=184.3

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      +.+|.+.|++++|+| ++.+|++|+.||+|+|||+.++   ..+..+..|...|.+++|+|++.+ +++|+.|+.+..|.
T Consensus        51 L~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~v~~~~~~~~-l~~~~~d~~i~~~~  125 (340)
T d1tbga_          51 LRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGNY-VACGGLDNICSIYN  125 (340)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTT---EEEEEEECSCSCEEEEEECTTSSE-EEEEETTCCEEEEE
T ss_pred             ECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecccc---eeEEEEecccccEEeeEeecccee-eeeecccceeeccc
Confidence            567889999999998 7889999999999999999884   557778899999999999999985 89999999987775


Q ss_pred             cccc------------------------------------------------------------------------ccCC
Q psy4578         697 EEEE------------------------------------------------------------------------ENYD  704 (860)
Q Consensus       697 ~~~~------------------------------------------------------------------------~~~d  704 (860)
                      ....                                                                        +..+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence            3221                                                                        1347


Q ss_pred             CcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe--ccCCCceEEEEEcC
Q psy4578         705 QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF--ESHKDEIFQVQWSP  782 (860)
Q Consensus       705 g~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~--~~h~~~V~~l~fsp  782 (860)
                      +.|++||++++   ..+..+.+|...|++++|+|++.+ +++|+.||.|++||++.... ...+  ..+...|.+++|+|
T Consensus       206 ~~v~i~d~~~~---~~~~~~~~h~~~i~~v~~~p~~~~-l~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~  280 (340)
T d1tbga_         206 ASAKLWDVREG---MCRQTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             TEEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECS
T ss_pred             ceEEEEECCCC---cEEEEEeCCCCCeEEEEECCCCCE-EEEEeCCCeEEEEeeccccc-ccccccccccCceEEEEECC
Confidence            88999999886   677788899999999999999984 99999999999999998876 4333  45677899999999


Q ss_pred             CCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         783 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       783 ~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++++ |++|+.||.|++||+.++              .++..+.+|.+.|++++|+|++++ +++|+.||.|+|
T Consensus       281 ~~~~-l~~g~~dg~i~iwd~~~~--------------~~~~~~~~H~~~V~~l~~s~d~~~-l~s~s~Dg~v~i  338 (340)
T d1tbga_         281 SGRL-LLAGYDDFNCNVWDALKA--------------DRAGVLAGHDNRVSCLGVTDDGMA-VATGSWDSFLKI  338 (340)
T ss_dssp             SSCE-EEEEETTSCEEEEETTTC--------------CEEEEECCCSSCEEEEEECTTSSC-EEEEETTSCEEE
T ss_pred             CCCE-EEEEECCCEEEEEECCCC--------------cEEEEEcCCCCCEEEEEEeCCCCE-EEEEccCCEEEE
Confidence            9985 889999999999999873              456777899999999999999995 679999999986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=6.2e-26  Score=244.62  Aligned_cols=224  Identities=17%  Similarity=0.256  Sum_probs=180.4

Q ss_pred             EEeeccchhhhhh-hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeE
Q psy4578         604 MYLENKTRAQICQ-LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYI  682 (860)
Q Consensus       604 l~l~n~~~~~l~~-l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~l  682 (860)
                      +++|+........ +.+|.+.|++++|+| ++++|++|+.||+|++||+.++.. .....+.+|.++|.+++|+|+++. 
T Consensus        40 v~i~~~~~~~~~~~~~~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~d~~~-  116 (311)
T d1nr0a1          40 VYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTH-ILKTTIPVFSGPVKDISWDSESKR-  116 (311)
T ss_dssp             EEEEETTCSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTC-CEEEEEECSSSCEEEEEECTTSCE-
T ss_pred             EEEEECCCCceeEEEcCCCCCEEEEEEeC-CCCeEeccccCceEeeeeeecccc-ccccccccccCccccccccccccc-
Confidence            3455554444433 446778999999999 799999999999999999987542 223456789999999999999996 


Q ss_pred             EEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCc
Q psy4578         683 LATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLK  762 (860)
Q Consensus       683 lasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~  762 (860)
                      +++++.+..             ..+++|+..++   .....+.+|...|++++|+|++.+++++|+.||.|++||+++..
T Consensus       117 l~~~~~~~~-------------~~~~v~~~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~  180 (311)
T d1nr0a1         117 IAAVGEGRE-------------RFGHVFLFDTG---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK  180 (311)
T ss_dssp             EEEEECCSS-------------CSEEEEETTTC---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred             ccccccccc-------------ccccccccccc---cccccccccccccccccccccceeeecccccccccccccccccc
Confidence            566654321             22899999887   55667889999999999999999889999999999999999988


Q ss_pred             eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCC
Q psy4578         763 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  842 (860)
Q Consensus       763 ~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~  842 (860)
                      . ...+..|...|++++|+|+++. +++|+.||.|++||..+..........       .....+|.+.|++++|+|+|+
T Consensus       181 ~-~~~~~~~~~~i~~v~~~p~~~~-l~~~~~d~~v~~~d~~~~~~~~~~~~~-------~~~~~~h~~~V~~~~~s~~~~  251 (311)
T d1nr0a1         181 F-KSTFGEHTKFVHSVRYNPDGSL-FASTGGDGTIVLYNGVDGTKTGVFEDD-------SLKNVAHSGSVFGLTWSPDGT  251 (311)
T ss_dssp             E-EEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEECBCT-------TSSSCSSSSCEEEEEECTTSS
T ss_pred             c-ccccccccccccccccCccccc-ccccccccccccccccccccccccccc-------ccccccccccccccccCCCCC
Confidence            6 7788899999999999999985 889999999999999886544332211       112347899999999999999


Q ss_pred             eEEEEEeCCCeEee
Q psy4578         843 WVICSVSEDNIMQK  856 (860)
Q Consensus       843 ~Llasgs~Dg~IrI  856 (860)
                      + +++|+.||.|+|
T Consensus       252 ~-l~tgs~Dg~v~i  264 (311)
T d1nr0a1         252 K-IASASADKTIKI  264 (311)
T ss_dssp             E-EEEEETTSEEEE
T ss_pred             E-EEEEeCCCeEEE
Confidence            5 778999999987

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3e-25  Score=233.59  Aligned_cols=220  Identities=20%  Similarity=0.307  Sum_probs=182.4

Q ss_pred             hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         612 AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       612 ~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      .....+.+|.+.|++++|+| ++++|+||+.||+|+|||+.++   +.+..+.+|...|.+++|+|++.. +++++.++.
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~---~~~~~~~~h~~~V~~~~~~~~~~~-~~~~~~~~~   82 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHSGKL-LASCSADMT   82 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTC---CCCEEECCCSSCEEEEEECTTSSE-EEEEETTSC
T ss_pred             CccEEEcCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---CEEEEEeCCCCcEEEEeeeccccc-ccccccccc
Confidence            33445667889999999998 7889999999999999999884   557788899999999999999985 888888888


Q ss_pred             eeeeccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEE
Q psy4578         692 QFEVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  744 (860)
Q Consensus       692 i~~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~ll  744 (860)
                      +..+.....                           ...++.+++||++++   .....+.+|...+.+++|+|++. ++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~l  158 (317)
T d1vyhc1          83 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQDGT-LI  158 (317)
T ss_dssp             CCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSS-EE
T ss_pred             cccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccc---eeeeEEccCCCcceeeecccCCC-EE
Confidence            766654332                           245788999999987   66778888999999999999988 48


Q ss_pred             EEeeCCCcEEEEeCCCCce-------------------------------------------------------------
Q psy4578         745 ATGSADKTVALWDLRNLKL-------------------------------------------------------------  763 (860)
Q Consensus       745 asgs~Dg~I~IWDl~~~~~-------------------------------------------------------------  763 (860)
                      ++|+.||.|++|+.++...                                                             
T Consensus       159 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  238 (317)
T d1vyhc1         159 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  238 (317)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             EEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc
Confidence            8888888888888764321                                                             


Q ss_pred             eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578         764 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW  843 (860)
Q Consensus       764 ~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~  843 (860)
                      .+..+.+|...|.+++|+|++++ |++|+.||.|++||+.++              .++..+.+|.+.|++++|+|++++
T Consensus       239 ~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~--------------~~~~~~~~h~~~V~~~~~s~~~~~  303 (317)
T d1vyhc1         239 CLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNK--------------RCMKTLNAHEHFVTSLDFHKTAPY  303 (317)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTS--------------CCCEEEECCSSCEEEEEECSSSSC
T ss_pred             EEEEEeCCCCCEEEEEECCCCCE-EEEEECCCeEEEEECCCC--------------cEEEEEcCCCCCEEEEEEcCCCCE
Confidence            13445678889999999999986 889999999999999873              345667789999999999999995


Q ss_pred             EEEEEeCCCeEee
Q psy4578         844 VICSVSEDNIMQK  856 (860)
Q Consensus       844 Llasgs~Dg~IrI  856 (860)
                       +++|+.||+|+|
T Consensus       304 -l~s~s~Dg~i~i  315 (317)
T d1vyhc1         304 -VVTGSVDQTVKV  315 (317)
T ss_dssp             -EEEEETTSEEEE
T ss_pred             -EEEEeCCCeEEE
Confidence             779999999986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.8e-24  Score=232.10  Aligned_cols=227  Identities=14%  Similarity=0.229  Sum_probs=182.5

Q ss_pred             EEEeeccchhhhh------hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEc
Q psy4578         603 VMYLENKTRAQIC------QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN  676 (860)
Q Consensus       603 il~l~n~~~~~l~------~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~s  676 (860)
                      .+.+|+.......      ...+|.+.|.+++|+| ++++|++|+.||.|++||+.... ......+..|...+.+++|+
T Consensus        73 ~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~-dg~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~  150 (337)
T d1gxra_          73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPT-PRIKAELTSSAPACYALAIS  150 (337)
T ss_dssp             EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEEC
T ss_pred             EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC-CCCEEEEeecccccccccccccc-cccccccccccccccccccc
Confidence            4556665433221      2335667899999998 78899999999999999987643 24455677899999999999


Q ss_pred             cCCCeEEEEEeCCCceeeeccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCC
Q psy4578         677 PYSEYILATGSADKTQFEVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTA  729 (860)
Q Consensus       677 p~g~~llasgs~Dg~i~~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~  729 (860)
                      |++. ++++++.|+.+.+|+....                           +..++.+++||++++   +.+..+ .|..
T Consensus       151 ~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~---~~~~~~-~~~~  225 (337)
T d1gxra_         151 PDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQH-DFTS  225 (337)
T ss_dssp             TTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEE-ECSS
T ss_pred             cccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---eeeccc-cccc
Confidence            9998 4889999999988876543                           245789999999886   344443 5889


Q ss_pred             CeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578         730 EVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  809 (860)
Q Consensus       730 ~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~  809 (860)
                      .|.+++|+|++.. +++|+.||.+++||+++...  .....|...|++++|+|+|++ |++|+.||.|++||+.++..  
T Consensus       226 ~i~~l~~~~~~~~-l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~i~~v~~s~~g~~-l~s~s~Dg~i~iwd~~~~~~--  299 (337)
T d1gxra_         226 QIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPDK--YQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYGAS--  299 (337)
T ss_dssp             CEEEEEECTTSSE-EEEEETTSCEEEEETTSSCE--EEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCE--
T ss_pred             ceEEEEEcccccc-cceecccccccccccccccc--ccccccccccceEEECCCCCE-EEEEeCCCeEEEEECCCCCE--
Confidence            9999999999985 88999999999999998875  456779999999999999985 88999999999999987433  


Q ss_pred             ccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         810 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       810 ~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                                  +.. .+|.+.|++++|+|++++ +++|+.||.|+|
T Consensus       300 ------------~~~-~~~~~~v~~~~~s~d~~~-l~t~s~D~~I~v  332 (337)
T d1gxra_         300 ------------IFQ-SKESSSVLSCDISVDDKY-IVTGSGDKKATV  332 (337)
T ss_dssp             ------------EEE-EECSSCEEEEEECTTSCE-EEEEETTSCEEE
T ss_pred             ------------EEE-ccCCCCEEEEEEeCCCCE-EEEEeCCCeEEE
Confidence                        222 347889999999999995 778999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.9e-24  Score=233.27  Aligned_cols=220  Identities=22%  Similarity=0.380  Sum_probs=176.9

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      .+...|++++|+| ++.+|++|+.||.|++||...+   .......+|...|.++.|++++.. +++|+.++.+.+|+..
T Consensus       119 ~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~-~~~~~~~~~i~~~d~~  193 (388)
T d1erja_         119 SSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLR  193 (388)
T ss_dssp             CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEECC-CCCcceeccccccccccccccc---cccccccccccccccccccccccc-ccccccceeeeeeecc
Confidence            4556799999998 7899999999999999999874   556777889999999999999885 8899999999998765


Q ss_pred             cc---------------------------ccCCCcEEEEeCCCCCCCC----CeeeecCCCCCeEEEEEcCCCCcEEEEe
Q psy4578         699 EE---------------------------ENYDQKLMIWDTRSHNVSK----PSHTVDAHTAEVNCLSFNPYSEYILATG  747 (860)
Q Consensus       699 ~~---------------------------~~~dg~I~iwDl~~~~~~~----~~~~~~~h~~~I~sl~~sp~g~~llasg  747 (860)
                      ..                           +..++.|++||..++....    ......+|...|++++|+|++.+ |++|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~  272 (388)
T d1erja_         194 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSG  272 (388)
T ss_dssp             TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-EEEE
T ss_pred             ccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCE-EEEE
Confidence            43                           3468899999998763211    12234578899999999999995 8999


Q ss_pred             eCCCcEEEEeCCCCce-----------eeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccC
Q psy4578         748 SADKTVALWDLRNLKL-----------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED  816 (860)
Q Consensus       748 s~Dg~I~IWDl~~~~~-----------~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~  816 (860)
                      +.||.|++||+++...           .......|...|.+++|+|+|++ |++|+.||.|++||+.+            
T Consensus       273 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~sg~~dg~i~vwd~~~------------  339 (388)
T d1erja_         273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKS------------  339 (388)
T ss_dssp             ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTT------------
T ss_pred             ECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCE-EEEEeCCCEEEEEECCC------------
Confidence            9999999999976542           13445678899999999999985 89999999999999987            


Q ss_pred             CCCccEEEecCccCceEEEEE------ccCCCeEEEEEeCCCeEee-ccCC
Q psy4578         817 GPPELLFIHGGHTAKISDFSW------NPNEPWVICSVSEDNIMQK-PFKK  860 (860)
Q Consensus       817 ~~~~~i~~~~~h~~~I~~i~~------spdg~~Llasgs~Dg~IrI-~f~k  860 (860)
                        ..++..+.+|.+.|+++++      +|++. ++++|+.||.|+| +++|
T Consensus       340 --~~~~~~l~~H~~~V~~~~~~~~~~~spd~~-~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         340 --GNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             --CCEEEEEECCSSCEEEEEECSSCTTCTTCE-EEEEEETTSEEEEEEEEE
T ss_pred             --CcEEEEEeCCCCCEEEEEEecCcccCCCCC-EEEEEeCCCEEEEEeeee
Confidence              3456777899999999975      56777 5889999999987 6654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.2e-24  Score=229.42  Aligned_cols=215  Identities=18%  Similarity=0.270  Sum_probs=179.4

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCee--eccCCCCCeeEEEEccCCCeEEEEEeCCCcee
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSH--TVDAHTAEVNCLSFNPYSEYILATGSADKTQF  693 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~--~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~  693 (860)
                      ..+.|...|++++|+| ++.+|++|+ ||.|+|||+.++.....+.  ...+|.+.|.+++|+|++++ |++|+.||.|.
T Consensus        46 ~~~~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~-l~s~~~dg~i~  122 (337)
T d1gxra_          46 NTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT-LIVGGEASTLS  122 (337)
T ss_dssp             EEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE-EEEEESSSEEE
T ss_pred             EECCCCCcEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCE-EEEeecccccc
Confidence            4456888999999998 889999987 8999999998754433333  34578999999999999985 89999999999


Q ss_pred             eeccccc-----------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEE
Q psy4578         694 EVEEEEE-----------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  744 (860)
Q Consensus       694 ~~~~~~~-----------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~ll  744 (860)
                      +|+....                             +..++.|++||+.++   .......+|...|.+++|++++.. +
T Consensus       123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~---~~~~~~~~~~~~v~~l~~s~~~~~-~  198 (337)
T d1gxra_         123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISNDGTK-L  198 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSE-E
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccc-c
Confidence            9976532                             235778999999876   556677889999999999999985 8


Q ss_pred             EEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEE
Q psy4578         745 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI  824 (860)
Q Consensus       745 asgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~  824 (860)
                      ++|+.||.|++||+++++. +..+ .|...|.+++|+|+++. +++|+.||.+++||+++..               ...
T Consensus       199 ~~~~~d~~v~i~d~~~~~~-~~~~-~~~~~i~~l~~~~~~~~-l~~~~~d~~i~i~d~~~~~---------------~~~  260 (337)
T d1gxra_         199 WTGGLDNTVRSWDLREGRQ-LQQH-DFTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPD---------------KYQ  260 (337)
T ss_dssp             EEEETTSEEEEEETTTTEE-EEEE-ECSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSSC---------------EEE
T ss_pred             cccccccccccccccccee-eccc-ccccceEEEEEcccccc-cceeccccccccccccccc---------------ccc
Confidence            8999999999999999875 5544 48899999999999985 8899999999999998733               234


Q ss_pred             ecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         825 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       825 ~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ...|.+.|++++|+|+|++ +++|+.||.|++
T Consensus       261 ~~~~~~~i~~v~~s~~g~~-l~s~s~Dg~i~i  291 (337)
T d1gxra_         261 LHLHESCVLSLKFAYCGKW-FVSTGKDNLLNA  291 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSE-EEEEETTSEEEE
T ss_pred             ccccccccceEEECCCCCE-EEEEeCCCeEEE
Confidence            4578999999999999994 779999999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=7.4e-24  Score=233.32  Aligned_cols=213  Identities=15%  Similarity=0.300  Sum_probs=173.7

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      ++|+|++|+| ++.+||+|+.||.|+|||..+++ ...+..+.+|.++|++++|+|++++ +++|+.|++          
T Consensus         8 ~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~~-~~~~~~l~gH~~~V~~l~fsp~~~~-l~s~s~D~~----------   74 (371)
T d1k8kc_           8 EPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNR-IVTCGTDRN----------   74 (371)
T ss_dssp             SCCCEEEECT-TSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTE-EEEEETTSC----------
T ss_pred             CCeEEEEECC-CCCEEEEEeCCCEEEEEECCCCC-EEEEEEecCCCCCEEEEEECCCCCE-EEEEECCCe----------
Confidence            6899999998 78999999999999999998643 2456778899999999999999985 889999999          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee---eEEeccCCCceEEE
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK---LHSFESHKDEIFQV  778 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~---~~~~~~h~~~V~~l  778 (860)
                           |++||+.++.. .....+.+|...|++++|+|+++. +++|+.|++|++|+.......   ......|...|.++
T Consensus        75 -----i~vWd~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~-l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v  147 (371)
T d1k8kc_          75 -----AYVWTLKGRTW-KPTLVILRINRAARCVRWAPNEKK-FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL  147 (371)
T ss_dssp             -----EEEEEEETTEE-EEEEECCCCSSCEEEEEECTTSSE-EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred             -----EEEEeeccccc-cccccccccccccccccccccccc-ceeecccCcceeeeeecccccccccccccccccccccc
Confidence                 99999986532 344556788999999999999995 999999999999998765431   23455788999999


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEECCCCCccccccc----ccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED----AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~----~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      +|+|++.+ |++|+.||.|++||............    ........+....+|.+.|.+++|+|+|++ +++++.|+.|
T Consensus       148 ~~~p~~~~-l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~s~~~d~~i  225 (371)
T d1k8kc_         148 DWHPNSVL-LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR-VAWVSHDSTV  225 (371)
T ss_dssp             EECTTSSE-EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE-EEEEETTTEE
T ss_pred             cccccccc-eeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc-ccccccCCcc
Confidence            99999985 89999999999999876543322111    111233566777889999999999999995 7789999998


Q ss_pred             ee
Q psy4578         855 QK  856 (860)
Q Consensus       855 rI  856 (860)
                      ++
T Consensus       226 ~i  227 (371)
T d1k8kc_         226 CL  227 (371)
T ss_dssp             EE
T ss_pred             eE
Confidence            76

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.2e-23  Score=231.69  Aligned_cols=217  Identities=16%  Similarity=0.198  Sum_probs=170.9

Q ss_pred             EEeeccchh---hhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         604 MYLENKTRA---QICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       604 l~l~n~~~~---~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      +.+|+....   .+..+.+|.+.|.+++|+| ++++|++|+.||+|+|||+.++.. .....+.+|...|++++|+|+++
T Consensus        31 i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~  108 (371)
T d1k8kc_          31 VHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTW-KPTLVILRINRAARCVRWAPNEK  108 (371)
T ss_dssp             EEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEE-EEEEECCCCSSCEEEEEECTTSS
T ss_pred             EEEEECCCCCEEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeeccccc-ccccccccccccccccccccccc
Confidence            444554333   2333456788999999999 788999999999999999986432 33455678899999999999998


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCC-CeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSK-PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR  759 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~-~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~  759 (860)
                      . +++|+.|++               +++|++....... .......|...|.+++|+|++.+ |++|+.||+|++||..
T Consensus       109 ~-l~~~s~d~~---------------i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-l~s~s~D~~v~v~~~~  171 (371)
T d1k8kc_         109 K-FAVGSGSRV---------------ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL-LAAGSCDFKCRIFSAY  171 (371)
T ss_dssp             E-EEEEETTSS---------------EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE-EEEEETTSCEEEEECC
T ss_pred             c-ceeecccCc---------------ceeeeeecccccccccccccccccccccccccccccc-eeccccCcEEEEEeec
Confidence            5 899999998               9999887653211 12345678899999999999995 8999999999999986


Q ss_pred             CCc-----------------eeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccE
Q psy4578         760 NLK-----------------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL  822 (860)
Q Consensus       760 ~~~-----------------~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i  822 (860)
                      ...                 .......+|...|.+++|+|+|+. +++++.||.|++||+.+.              ..+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~s~~~d~~i~iwd~~~~--------------~~~  236 (371)
T d1k8kc_         172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR-VAWVSHDSTVCLADADKK--------------MAV  236 (371)
T ss_dssp             CTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE-EEEEETTTEEEEEEGGGT--------------TEE
T ss_pred             cCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc-ccccccCCcceEEeeecc--------------cce
Confidence            532                 124556678999999999999985 899999999999999873              446


Q ss_pred             EEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         823 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       823 ~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      .....|..+|.+++|+|++. ++++|+++....
T Consensus       237 ~~~~~~~~~v~s~~fs~d~~-~la~g~d~~~~~  268 (371)
T d1k8kc_         237 ATLASETLPLLAVTFITESS-LVAAGHDCFPVL  268 (371)
T ss_dssp             EEEECSSCCEEEEEEEETTE-EEEEETTSSCEE
T ss_pred             eeeecccccceeeeecCCCC-EEEEEcCCceEE
Confidence            66778999999999999998 576766554433

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=5.3e-23  Score=221.39  Aligned_cols=212  Identities=17%  Similarity=0.323  Sum_probs=167.4

Q ss_pred             EEEeeccchhhh---hhhhhcccceeeeEeeccCCcEEEEEeC--CCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEcc
Q psy4578         603 VMYLENKTRAQI---CQLLDKLRLLIDVAWHLLHESLFGSVAD--DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  677 (860)
Q Consensus       603 il~l~n~~~~~l---~~l~~~~~~V~~v~~sp~~~~~lasgs~--DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp  677 (860)
                      .+.+|+......   ..+..|.+.|.+++|+| ++.++++++.  ++.++||++.++   +....+.+|...|++++|+|
T Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~---~~~~~l~~h~~~v~~v~~~~  156 (311)
T d1nr0a1          81 NVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTG---TSNGNLTGQARAMNSVDFKP  156 (311)
T ss_dssp             EEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTC---CBCBCCCCCSSCEEEEEECS
T ss_pred             eEeeeeeeccccccccccccccCccccccccc-cccccccccccccccccccccccc---cccccccccccccccccccc
Confidence            455666544432   22345678999999998 6778887775  456999999874   44567788999999999999


Q ss_pred             CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEe
Q psy4578         678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWD  757 (860)
Q Consensus       678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWD  757 (860)
                      ++++++++|+.||.               |++||+++.   .....+.+|...|+++.|+|++.+ +++|+.||.|++||
T Consensus       157 ~~~~~l~sgs~d~~---------------i~i~d~~~~---~~~~~~~~~~~~i~~v~~~p~~~~-l~~~~~d~~v~~~d  217 (311)
T d1nr0a1         157 SRPFRIISGSDDNT---------------VAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSL-FASTGGDGTIVLYN  217 (311)
T ss_dssp             SSSCEEEEEETTSC---------------EEEEETTTB---EEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEE
T ss_pred             cceeeecccccccc---------------ccccccccc---ccccccccccccccccccCccccc-cccccccccccccc
Confidence            99988999999998               999999986   667778899999999999999994 89999999999999


Q ss_pred             CCCCceeeEEe-------ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCc--
Q psy4578         758 LRNLKLKLHSF-------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--  828 (860)
Q Consensus       758 l~~~~~~~~~~-------~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h--  828 (860)
                      .+++.. ...+       .+|.+.|++++|+|+|++ |++|+.||.|++||+++++.              +..+..|  
T Consensus       218 ~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~s~~~~~-l~tgs~Dg~v~iwd~~t~~~--------------~~~l~~~~~  281 (311)
T d1nr0a1         218 GVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVATLKV--------------EKTIPVGTR  281 (311)
T ss_dssp             TTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEE--------------EEEEECCSS
T ss_pred             cccccc-cccccccccccccccccccccccCCCCCE-EEEEeCCCeEEEEECCCCcE--------------EEEEECCCC
Confidence            998765 4433       358899999999999985 88999999999999988543              3333333  


Q ss_pred             -cCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         829 -TAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       829 -~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                       ...+.++.|++  .+ +++++.||.|++
T Consensus       282 ~~~~~~~~~~~~--~~-l~s~s~dG~i~~  307 (311)
T d1nr0a1         282 IEDQQLGIIWTK--QA-LVSISANGFINF  307 (311)
T ss_dssp             GGGCEEEEEECS--SC-EEEEETTCCEEE
T ss_pred             ccceEEEEEecC--CE-EEEEECCCEEEE
Confidence             33455666654  44 668889999886

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=1e-22  Score=215.58  Aligned_cols=213  Identities=16%  Similarity=0.206  Sum_probs=166.6

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec-cCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~-~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      +.+|.+.|++++|+| ++.+|++|+.||+|++||+.++.   ....+ .+|...|++++|+|++.  +++++.|+.+.+|
T Consensus         8 ~~GH~~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~---~~~~~~~~h~~~v~~v~~~~~g~--~~~~~~d~~v~~~   81 (299)
T d1nr0a2           8 RYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGI---SNRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLKVV   81 (299)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCC---EEECSSCSCSSCEEEEEECTTSC--EEEEETTTEEEEE
T ss_pred             cCCCCCCcEEEEECC-CCCEEEEEcCCCeEEEEECCCCc---EEEEEcCCCCCcEEEEEeeccce--eecccceeeEEEe
Confidence            456888999999998 78999999999999999998853   33444 47899999999999987  4566678888888


Q ss_pred             cccccc-----------------------------cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEE
Q psy4578         696 EEEEEE-----------------------------NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT  746 (860)
Q Consensus       696 ~~~~~~-----------------------------~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llas  746 (860)
                      +.....                             ..++.+.+|+....     ...  .....+.+++|+|++. ++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~-----~~~--~~~~~~~~~~~s~~~~-~l~~  153 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL-----TEV--PISYNSSCVALSNDKQ-FVAV  153 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE-----EEE--ECSSCEEEEEECTTSC-EEEE
T ss_pred             ccCCccccccccccccccccccccccccccccccccccccccccccccc-----ccc--cccccccccccccccc-cccc
Confidence            654321                             12345667764321     111  2345678999999998 4899


Q ss_pred             eeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec
Q psy4578         747 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG  826 (860)
Q Consensus       747 gs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~  826 (860)
                      |+.||.|++||+++..........|...|++++|+|++.+ +++++.||.|++||+.+......           .....
T Consensus       154 g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~~~~~~~~~~~~-----------~~~~~  221 (299)
T d1nr0a2         154 GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF-LVATDQSRKVIPYSVANNFELAH-----------TNSWT  221 (299)
T ss_dssp             EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE-EEEEETTSCEEEEEGGGTTEESC-----------CCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc-----------ccccc
Confidence            9999999999998877534445578999999999999985 88999999999999987543221           23345


Q ss_pred             CccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         827 GHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       827 ~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|...|++++|+|++++ +++|+.||.|++
T Consensus       222 ~h~~~v~~l~~s~~~~~-l~sgs~dg~i~i  250 (299)
T d1nr0a2         222 FHTAKVACVSWSPDNVR-LATGSLDNSVIV  250 (299)
T ss_dssp             CCSSCEEEEEECTTSSE-EEEEETTSCEEE
T ss_pred             ccccccccccccccccc-eEEEcCCCEEEE
Confidence            78999999999999994 779999999887

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.8e-22  Score=218.65  Aligned_cols=228  Identities=19%  Similarity=0.325  Sum_probs=166.8

Q ss_pred             hhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccC---------------eeeccCCCCCeeEEEEccCCC
Q psy4578         616 QLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKP---------------SHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       616 ~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~---------------~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      ..++|.+.|++++|+| ++.+|++|+ ||.|+|||+.++.....               ......|...|++++|+|+++
T Consensus        57 ~~~~H~~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~  134 (388)
T d1erja_          57 KSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  134 (388)
T ss_dssp             EEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             eeCCCCCcEEEEEECC-CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence            4457889999999998 788999986 89999999987532111               112235677899999999998


Q ss_pred             eEEEEEeCCCceeeeccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEE
Q psy4578         681 YILATGSADKTQFEVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNC  733 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~s  733 (860)
                      + +++|+.||.+.+|+....                           +..++.+++||..+.   ....... +.....+
T Consensus       135 ~-l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~-~~~~~~~  209 (388)
T d1erja_         135 F-LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG---QCSLTLS-IEDGVTT  209 (388)
T ss_dssp             E-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEE
T ss_pred             c-ceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccc---ccccccc-ccccccc
Confidence            5 899999999999976543                           245788999999875   3344444 3445556


Q ss_pred             EEEcC-CCCcEEEEeeCCCcEEEEeCCCCceeeEE-------eccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578         734 LSFNP-YSEYILATGSADKTVALWDLRNLKLKLHS-------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       734 l~~sp-~g~~llasgs~Dg~I~IWDl~~~~~~~~~-------~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~  805 (860)
                      +.+++ ++. ++++|+.||.|++||.+++.. ...       ..+|.+.|++++|+|+++. |++|+.||.|++||+++.
T Consensus       210 ~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         210 VAVSPGDGK-YIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             EEECSTTCC-EEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEEEEC---
T ss_pred             ccccCCCCC-eEEEEcCCCeEEEeecccCcc-ceeeccccccccCCCCCEEEEEECCCCCE-EEEEECCCcEEEEeccCC
Confidence            66665 555 699999999999999998765 322       3468899999999999985 899999999999999876


Q ss_pred             CcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         806 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       806 ~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ........  ............|...|++++|+|+|++ +++|+.||.|++
T Consensus       287 ~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~sg~~dg~i~v  334 (388)
T d1erja_         287 NNKSDSKT--PNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLF  334 (388)
T ss_dssp             --------------CEEEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEE
T ss_pred             cccccccc--ccccceeeecccccceEEEEEECCCCCE-EEEEeCCCEEEE
Confidence            55433221  1223455666789999999999999995 779999999886

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.4e-21  Score=209.20  Aligned_cols=210  Identities=13%  Similarity=0.193  Sum_probs=163.6

Q ss_pred             hhhhhhcc-cceeeeEeecc-CCcEEEEEeCCCcEEEEEcCCCCcccCe-----eeccCCCCCeeEEEEccCCCeEEEEE
Q psy4578         614 ICQLLDKL-RLLIDVAWHLL-HESLFGSVADDQKLMIWDTRSHNVSKPS-----HTVDAHTAEVNCLSFNPYSEYILATG  686 (860)
Q Consensus       614 l~~l~~~~-~~V~~v~~sp~-~~~~lasgs~DG~I~IWd~~~~~~~~~~-----~~~~~h~~~V~~l~~sp~g~~llasg  686 (860)
                      .....+|+ ..|++++|+|. ++.++++|+.||+|+|||+..+......     ..+..|.++|.+++|++++.++++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  134 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG  134 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence            44455664 57999999984 5679999999999999999764322211     23456889999999999999754444


Q ss_pred             e-CCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceee
Q psy4578         687 S-ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL  765 (860)
Q Consensus       687 s-~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~  765 (860)
                      . .++.               +++|+..++   ..+..+.+|...|++++|+|++.+++++|+.||.+++||....+...
T Consensus       135 ~~~~~~---------------~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~  196 (325)
T d1pgua1         135 EGRDNF---------------GVFISWDSG---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA  196 (325)
T ss_dssp             CCSSCS---------------EEEEETTTC---CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE
T ss_pred             ccccce---------------EEEEeeccc---ccceeeeecccccccccccccccceEEEeecccccccccccccccce
Confidence            2 3444               899999876   66778889999999999999998878899999999999998776522


Q ss_pred             E--EeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc---cC
Q psy4578         766 H--SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN---PN  840 (860)
Q Consensus       766 ~--~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s---pd  840 (860)
                      .  ....|...|++++|+|++..++++|+.||.|++||++++              ..+..+.+|...+.++.|+   ++
T Consensus       197 ~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~--------------~~~~~l~~~~~~v~~~~~s~~~~d  262 (325)
T d1pgua1         197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG--------------EFLKYIEDDQEPVQGGIFALSWLD  262 (325)
T ss_dssp             EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC--------------CEEEECCBTTBCCCSCEEEEEESS
T ss_pred             ecccccCCCCccEEeeeccccceeccccccccceeeeeeccc--------------cccccccccccccccceeeeeccC
Confidence            2  234577889999999986667999999999999999874              3455566777777666665   67


Q ss_pred             CCeEEEEEeCCCeEee
Q psy4578         841 EPWVICSVSEDNIMQK  856 (860)
Q Consensus       841 g~~Llasgs~Dg~IrI  856 (860)
                      |++ +++++.|+.|+|
T Consensus       263 g~~-l~s~s~D~~i~i  277 (325)
T d1pgua1         263 SQK-FATVGADATIRV  277 (325)
T ss_dssp             SSE-EEEEETTSEEEE
T ss_pred             CCE-EEEEeCCCeEEE
Confidence            885 779999999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=4.1e-21  Score=203.47  Aligned_cols=216  Identities=12%  Similarity=0.087  Sum_probs=154.8

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      .|.+.|++|+|+| ++++|++|+.||+|+|||+.++..........+|.++|.+++|+|++..++++|+.||.+.+|...
T Consensus         9 ~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~   87 (342)
T d1yfqa_           9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CCCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecc
Confidence            4557899999999 788999999999999999987543333444457999999999999887789999999999888765


Q ss_pred             cc----------------------------cc------------------------------------------------
Q psy4578         699 EE----------------------------EN------------------------------------------------  702 (860)
Q Consensus       699 ~~----------------------------~~------------------------------------------------  702 (860)
                      ..                            +.                                                
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (342)
T d1yfqa_          88 GSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM  167 (342)
T ss_dssp             SSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeec
Confidence            32                            01                                                


Q ss_pred             CCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee--------------eEEe
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK--------------LHSF  768 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~--------------~~~~  768 (860)
                      .++.|++||+..............+...+.+..+.+.....+++++.||.+.+|+.......              ....
T Consensus       168 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (342)
T d1yfqa_         168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD  247 (342)
T ss_dssp             STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC
T ss_pred             CCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCC
Confidence            24455555555443333333334455566677777655556999999999999998654321              0112


Q ss_pred             ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578         769 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       769 ~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                      .+|...|++++|+|++++ |+||+.||.|++||+.+.+.              +..+..+ ..+..++|+|+|+.+++++
T Consensus       248 ~~~~~~v~~l~~sp~~~~-lasg~~Dg~v~vWD~~~~~~--------------l~~~~~~-~~~~~~~~s~~~~~l~~a~  311 (342)
T d1yfqa_         248 TNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQTRKK--------------IKNFAKF-NEDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             CSSCCCEEEEEECTTTCC-EEEEETTSCEEEEETTTTEE--------------EEECCCC-SSSEEEEEEECSSEEEEEE
T ss_pred             CcccccceeEEecCCccE-EEEECCCCEEEEEECCCCcE--------------EEEecCC-CCCEEEEEEeCCCEEEEEE
Confidence            346678999999999986 89999999999999988433              3333322 3445678888999655555


Q ss_pred             eCC
Q psy4578         849 SED  851 (860)
Q Consensus       849 s~D  851 (860)
                      ++|
T Consensus       312 sdd  314 (342)
T d1yfqa_         312 SDD  314 (342)
T ss_dssp             ECT
T ss_pred             cCC
Confidence            544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=6.6e-22  Score=208.16  Aligned_cols=209  Identities=14%  Similarity=0.256  Sum_probs=163.2

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      ..+.+|.++|++++|+|     |+||+.||+|++||+.++        ..+|...|.++.+++++.  +++++.|+++.+
T Consensus         7 ~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~~--~~s~s~D~~v~~   71 (287)
T d1pgua2           7 KTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQE--YSSISWDDTLKV   71 (287)
T ss_dssp             EEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE--------ECCCCSCEEEEECCSTTC--CEEEETTTEEEE
T ss_pred             EEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCCe--EEEEeecccccc
Confidence            34567889999999986     899999999999998752        247899999999987654  688999999888


Q ss_pred             eccccc----------------------------------------------------------cc-CCCcEEEEeCCCC
Q psy4578         695 VEEEEE----------------------------------------------------------EN-YDQKLMIWDTRSH  715 (860)
Q Consensus       695 ~~~~~~----------------------------------------------------------~~-~dg~I~iwDl~~~  715 (860)
                      |+....                                                          +. .++.+++|++...
T Consensus        72 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~  151 (287)
T d1pgua2          72 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL  151 (287)
T ss_dssp             TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE
T ss_pred             ccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeecccc
Confidence            865431                                                          01 1234667766543


Q ss_pred             CCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCC---------C
Q psy4578         716 NVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE---------T  786 (860)
Q Consensus       716 ~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~---------~  786 (860)
                      .  ........|...+++++|+|++.+ |++|+.||.|++||+.++......+.+|...|.+++|+|.+.         .
T Consensus       152 ~--~~~~~~~~~~~~v~~~~~s~~~~~-l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~  228 (287)
T d1pgua2         152 E--VSFDLKTPLRAKPSYISISPSETY-IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED  228 (287)
T ss_dssp             E--EEEECSSCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred             c--eeeeeeeccCCceeEEEeccCccc-cccccccccccceeecccccccccccccccccceeeecccccccccccCCCC
Confidence            1  111122347788999999999995 999999999999999998864555778999999999998542         3


Q ss_pred             EEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         787 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       787 lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++++|+.|++|++||+++..             ..+....+|.+.|++++|+|++.  +++++.|+.|++
T Consensus       229 ~l~sgs~D~~i~iw~~~~~~-------------~~~~~~~~h~~~V~~v~~~~~~~--l~s~g~D~~v~i  283 (287)
T d1pgua2         229 LVATGSLDTNIFIYSVKRPM-------------KIIKALNAHKDGVNNLLWETPST--LVSSGADACIKR  283 (287)
T ss_dssp             EEEEEETTSCEEEEESSCTT-------------CCEEETTSSTTCEEEEEEEETTE--EEEEETTSCEEE
T ss_pred             eeEeecCCCeEEEEECCCCC-------------eEEEEeCCCCCCeEEEEECCCCE--EEEEECCCeEEE
Confidence            58999999999999987622             34566778999999999999875  668889999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.5e-21  Score=207.89  Aligned_cols=202  Identities=15%  Similarity=0.186  Sum_probs=155.0

Q ss_pred             cccceeeeEeeccCCcEEEEEe--CCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVA--DDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs--~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      +.++|.+++|++ ++..+++++  .++.+++|+..++   ..+..+.+|...|++++|+|++++++++++.|+.      
T Consensus       114 ~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~------  183 (325)
T d1pgua1         114 LAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS------  183 (325)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTC---CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTE------
T ss_pred             ccCcEEEEEECC-CCCccceeeccccceEEEEeeccc---ccceeeeecccccccccccccccceEEEeecccc------
Confidence            457899999998 666666554  4678999999874   5577788999999999999999988899999998      


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEE
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQ  777 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~  777 (860)
                               +++||....+.........+|...|++++|+|++..++++|+.||.|++||++++.. +..+.+|...+.+
T Consensus       184 ---------v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~-~~~l~~~~~~v~~  253 (325)
T d1pgua1         184 ---------VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQG  253 (325)
T ss_dssp             ---------EEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE-EEECCBTTBCCCS
T ss_pred             ---------cccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccc-ccccccccccccc
Confidence                     999998765332333345678889999999998655799999999999999999886 7888888877665


Q ss_pred             EEEc---CCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecC--ccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         778 VQWS---PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       778 l~fs---p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~--h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      +.|+   |+|.+ |++|+.||.|++||+++++.              +..+..  |...+..+++.+.+...+++++.||
T Consensus       254 ~~~s~~~~dg~~-l~s~s~D~~i~iwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg  318 (325)
T d1pgua1         254 GIFALSWLDSQK-FATVGADATIRVWDVTTSKC--------------VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG  318 (325)
T ss_dssp             CEEEEEESSSSE-EEEEETTSEEEEEETTTTEE--------------EEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred             ceeeeeccCCCE-EEEEeCCCeEEEEECCCCCE--------------EEEEEecCCcccCeEEEEEECCCCEEEEEECCC
Confidence            5555   67774 88999999999999987443              333323  3333334444433332477999999


Q ss_pred             eEee
Q psy4578         853 IMQK  856 (860)
Q Consensus       853 ~IrI  856 (860)
                      .|+|
T Consensus       319 ~i~v  322 (325)
T d1pgua1         319 TLNF  322 (325)
T ss_dssp             CEEE
T ss_pred             EEEE
Confidence            9986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.6e-21  Score=201.26  Aligned_cols=209  Identities=22%  Similarity=0.342  Sum_probs=160.0

Q ss_pred             hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      +.+|.+.|.+ ++++ ++++|+||+.||+|+|||+.++   +++.++.+|.+.|.+++|+|+   ++++|+.|+.+.+|.
T Consensus        12 l~GH~~~V~s-~~~~-~g~~l~sgs~Dg~i~vWd~~~~---~~~~~~~~h~~~V~~v~~~~~---~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWN   83 (342)
T ss_dssp             EECSTTSCEE-EEEE-ETTEEEEEETTSCEEEEETTTC---CEEEECCCCSSCEEEEEEETT---EEEEEETTSCEEEEE
T ss_pred             ECCcCCceEE-EEEE-CCCEEEEEeCCCeEEEEECCCC---CEEEEEeCCCCCEEEEEeCCC---ccccceecccccccc
Confidence            4567778765 3555 5789999999999999999884   567888999999999999873   589999999877765


Q ss_pred             cccc----------------------------------------------------------------------------
Q psy4578         697 EEEE----------------------------------------------------------------------------  700 (860)
Q Consensus       697 ~~~~----------------------------------------------------------------------------  700 (860)
                      ....                                                                            
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d  163 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD  163 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEee
Confidence            3321                                                                            


Q ss_pred             -----------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC
Q psy4578         701 -----------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK  751 (860)
Q Consensus       701 -----------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg  751 (860)
                                                   ++.||.|++||++.+   ..+..+.+|...+.++++++  . ++++|+.||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~--~-~l~s~s~d~  237 (342)
T d2ovrb2         164 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELKD--N-ILVSGNADS  237 (342)
T ss_dssp             GGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEET--T-EEEEEETTS
T ss_pred             cccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccc---eeeeEecccccceeEEecCC--C-EEEEEcCCC
Confidence                                         123566777777765   56677888999999888875  4 589999999


Q ss_pred             cEEEEeCCCCceeeEEec---cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCc
Q psy4578         752 TVALWDLRNLKLKLHSFE---SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH  828 (860)
Q Consensus       752 ~I~IWDl~~~~~~~~~~~---~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h  828 (860)
                      .|++||...... ...+.   .|...+.++.+++  + ++++|+.||+|++||+++++....+..         ....+|
T Consensus       238 ~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~-~~~s~s~Dg~i~iwd~~tg~~i~~~~~---------~~~~~~  304 (342)
T d2ovrb2         238 TVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLKTGEFIRNLVT---------LESGGS  304 (342)
T ss_dssp             CEEEEETTTCCE-EEEECSTTSCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCEEEEEEE---------CTTGGG
T ss_pred             EEEEEecccccc-cccccccceeeeceeecccCC--C-eeEEEcCCCEEEEEECCCCCEEEEEec---------ccCCCC
Confidence            999999988776 44444   3566777777764  4 589999999999999998654332210         112368


Q ss_pred             cCceEEEEEccCCCeEEEEEeCCCe
Q psy4578         829 TAKISDFSWNPNEPWVICSVSEDNI  853 (860)
Q Consensus       829 ~~~I~~i~~spdg~~Llasgs~Dg~  853 (860)
                      .+.|++++|+|++. ++++|+.||+
T Consensus       305 ~~~v~~v~~s~~~~-~la~g~~dGt  328 (342)
T d2ovrb2         305 GGVVWRIRASNTKL-VCAVGSRNGT  328 (342)
T ss_dssp             TCEEEEEEECSSEE-EEEEECSSSS
T ss_pred             CCCEEEEEECCCCC-EEEEEeCCCC
Confidence            88999999999987 6889999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-20  Score=196.09  Aligned_cols=212  Identities=22%  Similarity=0.398  Sum_probs=165.2

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      ..+...|+|++|   ++++|+||+.||+|+|||+.++   +++..+.+|.+.|++++|+  ++ +|++|+.||.+.+|+.
T Consensus        12 ~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~v~~~--~~-~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2          12 SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTL---ECKRILTGHTGSVLCLQYD--ER-VIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSC---CEEEEECCCSSCEEEEECC--SS-EEEEEETTSCEEEEES
T ss_pred             CCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCC---cEEEEEecCCCCEeeeecc--cc-eeeccccccccccccc
Confidence            345567888765   4789999999999999999884   5678889999999999984  55 5899999999988876


Q ss_pred             ccc--------------------------------------------------------------------ccCCCcEEE
Q psy4578         698 EEE--------------------------------------------------------------------ENYDQKLMI  709 (860)
Q Consensus       698 ~~~--------------------------------------------------------------------~~~dg~I~i  709 (860)
                      ...                                                                    ...|+.+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~  162 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV  162 (293)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred             ccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceee
Confidence            432                                                                    124667777


Q ss_pred             EeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEE
Q psy4578         710 WDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA  789 (860)
Q Consensus       710 wDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~  789 (860)
                      ||.+++   +.+..+.++...+..+.+++  . .+++|+.||.|++||+++... +....+|...+..+  ++++. .|+
T Consensus       163 ~d~~~~---~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~--~~~~~-~l~  232 (293)
T d1p22a2         163 WNTSTC---EFVRTLNGHKRGIACLQYRD--R-LVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCI--RFDNK-RIV  232 (293)
T ss_dssp             EETTTC---CEEEEEECCSSCEEEEEEET--T-EEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEE--ECCSS-EEE
T ss_pred             ecCCCC---cEEEEEcccccccccccCCC--C-eEEEecCCCEEEEEeccccee-eeeecccceeeeec--cccce-EEE
Confidence            777765   55667778888888877764  4 488999999999999998886 77788888888764  44565 488


Q ss_pred             EEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         790 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       790 tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +|+.||.|++||+.........     .....+..+.+|.+.|++++|+  +.+ +++||.||+|+|
T Consensus       233 sg~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~H~~~V~~v~~d--~~~-l~s~s~Dg~i~i  291 (293)
T d1p22a2         233 SGAYDGKIKVWDLVAALDPRAP-----AGTLCLRTLVEHSGRVFRLQFD--EFQ-IVSSSHDDTILI  291 (293)
T ss_dssp             EEETTSCEEEEEHHHHTSTTSC-----TTTTEEEEECCCSSCCCCEEEC--SSC-EEECCSSSEEEE
T ss_pred             EEcCCCEEEEEECCCCcccccc-----CCceeeEEecCCCCCEEEEEEc--CCE-EEEEecCCEEEE
Confidence            9999999999998764433221     1235677888999999999995  454 789999999986

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.86  E-value=8.7e-21  Score=200.49  Aligned_cols=232  Identities=16%  Similarity=0.239  Sum_probs=165.5

Q ss_pred             EEEeeccchhhhhhhh--hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         603 VMYLENKTRAQICQLL--DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       603 il~l~n~~~~~l~~l~--~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      .+.+|+....+....+  .|...|++++|+| ++. +++++.|+.+++|+...............+...+.+++|++++.
T Consensus        35 ~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  112 (299)
T d1nr0a2          35 HINSWDISTGISNRVFPDVHATMITGIKTTS-KGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD  112 (299)
T ss_dssp             CEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred             eEEEEECCCCcEEEEEcCCCCCcEEEEEeec-cce-eecccceeeEEEeccCCccccccccccccccccccccccccccc
Confidence            3566666655544444  4567899999998 555 55677899999999875433222333345677888999999888


Q ss_pred             eEEEEEeCCCceeeeccccc-----------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEc
Q psy4578         681 YILATGSADKTQFEVEEEEE-----------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN  737 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~-----------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~s  737 (860)
                      . +++++ ++.+.+|+....                       +..+|.|++||++++..  .......|...|++++|+
T Consensus       113 ~-~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~  188 (299)
T d1nr0a2         113 I-AVAAC-YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV--SEVKTIVHPAEITSVAFS  188 (299)
T ss_dssp             C-EEEEE-SSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE--EEEEEEECSSCEEEEEEC
T ss_pred             c-ccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccc
Confidence            4 44444 445666643221                       34678899999987531  112345688999999999


Q ss_pred             CCCCcEEEEeeCCCcEEEEeCCCCcee--eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccccc
Q psy4578         738 PYSEYILATGSADKTVALWDLRNLKLK--LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE  815 (860)
Q Consensus       738 p~g~~llasgs~Dg~I~IWDl~~~~~~--~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~  815 (860)
                      |++.+ +++|+.||.|++||+.+....  ...+.+|...|++++|+|++++ |++|+.||.|++||+.+....       
T Consensus       189 ~~~~~-l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~sgs~dg~i~iwd~~~~~~~-------  259 (299)
T d1nr0a2         189 NNGAF-LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR-LATGSLDNSVIVWNMNKPSDH-------  259 (299)
T ss_dssp             TTSSE-EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTCTTSC-------
T ss_pred             ccccc-ccccccccccccccccccccccccccccccccccccccccccccc-eEEEcCCCEEEEEECCCCCcc-------
Confidence            99985 889999999999999876542  3456678999999999999985 899999999999999874432       


Q ss_pred             CCCCccEEEecC-ccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         816 DGPPELLFIHGG-HTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       816 ~~~~~~i~~~~~-h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                           ....... +...|..+.| +++++ +++++.|+.|++
T Consensus       260 -----~~~~~~~~~~~~v~~~~~-~~~~~-l~s~s~D~~i~i  294 (299)
T d1nr0a2         260 -----PIIIKGAHAMSSVNSVIW-LNETT-IVSAGQDSNIKF  294 (299)
T ss_dssp             -----CEEETTSSTTSCEEEEEE-EETTE-EEEEETTSCEEE
T ss_pred             -----eEEEecCCCCCcEEEEEE-CCCCE-EEEEeCCCEEEE
Confidence                 2222333 3456666655 55664 678899999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.5e-20  Score=194.22  Aligned_cols=179  Identities=17%  Similarity=0.288  Sum_probs=156.2

Q ss_pred             hhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         612 AQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       612 ~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      ........+...+.++.|++ ++..+++++.|+.+++||+.++   .....+.+|...+.+++|+|++. ++++|+.||.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~  166 (317)
T d1vyhc1          92 ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQT  166 (317)
T ss_dssp             CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             ccccccccccccceeeeccC-CCceEEeeccCcceeEeecccc---eeeeEEccCCCcceeeecccCCC-EEEEEeCCCe
Confidence            33444556778899999998 7888999999999999999884   45677788999999999999998 5899999999


Q ss_pred             eeeeccccc-----------------------------------------------ccCCCcEEEEeCCCCCCCCCeeee
Q psy4578         692 QFEVEEEEE-----------------------------------------------ENYDQKLMIWDTRSHNVSKPSHTV  724 (860)
Q Consensus       692 i~~~~~~~~-----------------------------------------------~~~dg~I~iwDl~~~~~~~~~~~~  724 (860)
                      +.+|+....                                               +..|+.|++||++++   ..+..+
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~  243 (317)
T d1vyhc1         167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTL  243 (317)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEE
T ss_pred             EEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC---cEEEEE
Confidence            988875432                                               134788999999987   677888


Q ss_pred             cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         725 DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       725 ~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      .+|...|.+++|+|++.+ |++|+.||.|++||+++++. +..+.+|.+.|++++|+|++++ |++|+.||+|++||
T Consensus       244 ~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~-~~~~~~h~~~V~~~~~s~~~~~-l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         244 VGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTSCC-CEEEECCSSCEEEEEECSSSSC-EEEEETTSEEEEEC
T ss_pred             eCCCCCEEEEEECCCCCE-EEEEECCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCeEEEeC
Confidence            999999999999999995 89999999999999999886 8889999999999999999986 88999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.4e-20  Score=198.09  Aligned_cols=210  Identities=20%  Similarity=0.313  Sum_probs=159.3

Q ss_pred             hhhhcccce-eeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         616 QLLDKLRLL-IDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       616 ~l~~~~~~V-~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      .+.+|.+.| +|++|   ++++|+||+.||+|+|||+.++   +.+..+.+|.+.|++++|+|++  .+++|+.||++.+
T Consensus         7 tL~GH~~~vitc~~~---~~~~l~tgs~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~l~~s~~~--~l~s~s~D~~i~i   78 (355)
T d1nexb2           7 TLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRV   78 (355)
T ss_dssp             EEECCSSSCEEEEEE---ETTEEEEEETTTEEEEEETTTT---EEEEEEECCSSCEEEEEEETTT--EEEEEETTCCEEE
T ss_pred             EECCcCCCcEEEEEE---CCCEEEEEeCCCeEEEEECCCC---cEEEEEECCCCCEEEEEEcCCC--EEEEEeccccccc
Confidence            355677775 55555   4679999999999999999884   6678889999999999999854  4899999999998


Q ss_pred             eccccc-----------------------------ccCCCcEEEEeCCCCCC----------------------------
Q psy4578         695 VEEEEE-----------------------------ENYDQKLMIWDTRSHNV----------------------------  717 (860)
Q Consensus       695 ~~~~~~-----------------------------~~~dg~I~iwDl~~~~~----------------------------  717 (860)
                      |+....                             +..++.|++||+.+...                            
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence            876543                             24577888888754311                            


Q ss_pred             --------------------------------CCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceee
Q psy4578         718 --------------------------------SKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKL  765 (860)
Q Consensus       718 --------------------------------~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~  765 (860)
                                                      .+.+....++...+.++.|+|++.. +++++.||.|++||.+++.. +
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~-~  236 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR-CISASMDTTIRIWDLENGEL-M  236 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTCCE-E
T ss_pred             eccccccccccccceeeeecccceeeeeecccccceeeeecccccccccccccccee-eecccccceEEeeecccccc-c
Confidence                                            0112233456677889999999985 88999999999999999887 8


Q ss_pred             EEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEE-EccCCCeE
Q psy4578         766 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS-WNPNEPWV  844 (860)
Q Consensus       766 ~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~-~spdg~~L  844 (860)
                      ..+.+|...|.+++|++  + ++++|+.||.|++||+++...                ....|...+.+++ +++++. +
T Consensus       237 ~~~~~h~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~  296 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSD--K-FLVSAAADGSIRGWDANDYSR----------------KFSYHHTNLSAITTFYVSDN-I  296 (355)
T ss_dssp             EEECCCSSCCCEEEECS--S-EEEEECTTSEEEEEETTTCCE----------------EEEEECTTCCCCCEEEECSS-E
T ss_pred             ccccccccccccccccc--c-eeeeeecccccccccccccce----------------ecccccCCceEEEEEcCCCC-E
Confidence            88999999999999975  3 489999999999999986322                2234555666654 456665 6


Q ss_pred             EEEEeCCCeEee
Q psy4578         845 ICSVSEDNIMQK  856 (860)
Q Consensus       845 lasgs~Dg~IrI  856 (860)
                      +++|+ |+.|+|
T Consensus       297 l~~g~-d~~i~v  307 (355)
T d1nexb2         297 LVSGS-ENQFNI  307 (355)
T ss_dssp             EEEEE-TTEEEE
T ss_pred             EEEEe-CCEEEE
Confidence            66665 677775

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.4e-20  Score=205.36  Aligned_cols=230  Identities=16%  Similarity=0.179  Sum_probs=160.0

Q ss_pred             hhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCccc---CeeeccCCCCCeeEEE------EccCCCeEEEEEeC
Q psy4578         618 LDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSK---PSHTVDAHTAEVNCLS------FNPYSEYILATGSA  688 (860)
Q Consensus       618 ~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~---~~~~~~~h~~~V~~l~------~sp~g~~llasgs~  688 (860)
                      .+|.+.|.++++++   ++++||+.||+|+|||..+.....   .......|...+..+.      .+.....++++++.
T Consensus        11 ~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          11 KAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            46788999999864   689999999999999987643211   1122223444333222      22223346889999


Q ss_pred             CCceeeeccccc------------------------------------------ccCCCcEEEEeCCCCCC--------C
Q psy4578         689 DKTQFEVEEEEE------------------------------------------ENYDQKLMIWDTRSHNV--------S  718 (860)
Q Consensus       689 Dg~i~~~~~~~~------------------------------------------~~~dg~I~iwDl~~~~~--------~  718 (860)
                      ||.+.+|+....                                          +..+|.+++|++.....        .
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence            999988864321                                          13478899999854210        0


Q ss_pred             C-------CeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeE------EeccCCCceEEEEEcCCCC
Q psy4578         719 K-------PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH------SFESHKDEIFQVQWSPHNE  785 (860)
Q Consensus       719 ~-------~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~------~~~~h~~~V~~l~fsp~g~  785 (860)
                      .       .......+...+.+++|+|++  ++++|+.||+|++||+++++. +.      .+.+|..+|++++|+|+|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~-~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRP-LYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEE-EEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             ccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeeccccc-ccccccccccccccceEEEcccccccc
Confidence            0       111223455678999999987  589999999999999998775 33      3456899999999999998


Q ss_pred             CEEEEEECCCc---EEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         786 TILASSGTDRR---LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       786 ~lL~tgs~Dg~---I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      . |++|+.|++   |++||+.++......... ...........+|.+.|++++|+|+|+ +|++||.|++|+|
T Consensus       245 ~-l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~-~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~v  315 (393)
T d1sq9a_         245 L-LAIAHDSNSFGCITLYETEFGERIGSLSVP-THSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRF  315 (393)
T ss_dssp             E-EEEEEEETTEEEEEEEETTTCCEEEEECBC---------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEE
T ss_pred             e-eeeecCCCCcceeeecccccceeeeeeccc-cccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEE
Confidence            5 899998874   999999987665543321 122334455668999999999999999 5889999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=2e-19  Score=191.68  Aligned_cols=167  Identities=21%  Similarity=0.324  Sum_probs=141.3

Q ss_pred             hhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCC
Q psy4578         611 RAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK  690 (860)
Q Consensus       611 ~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg  690 (860)
                      .........+...+....+.+ ...++++|+.||.|++||++++   ..+..+.+|...|++++|+|++.. +++|+.||
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~---~~~~~~~~h~~~i~~v~~~p~~~~-l~s~s~d~  248 (340)
T d1tbga_         174 GQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGNA-FATGSDDA  248 (340)
T ss_dssp             TEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSE-EEEEETTS
T ss_pred             ccccccccccceeEeeecccc-ccceeEEeecCceEEEEECCCC---cEEEEEeCCCCCeEEEEECCCCCE-EEEEeCCC
Confidence            333444445566788888887 7889999999999999999884   567788899999999999999985 89999999


Q ss_pred             ceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc
Q psy4578         691 TQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES  770 (860)
Q Consensus       691 ~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~  770 (860)
                      .               |++||++.... ........+...|.+++|+|++.+ |++|+.||.|++||+.++.. +..+.+
T Consensus       249 ~---------------i~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~-l~~g~~dg~i~iwd~~~~~~-~~~~~~  310 (340)
T d1tbga_         249 T---------------CRLFDLRADQE-LMTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDALKADR-AGVLAG  310 (340)
T ss_dssp             C---------------EEEEETTTTEE-EEEECCTTCCSCEEEEEECSSSCE-EEEEETTSCEEEEETTTCCE-EEEECC
T ss_pred             e---------------EEEEeeccccc-ccccccccccCceEEEEECCCCCE-EEEEECCCEEEEEECCCCcE-EEEEcC
Confidence            8               99999987522 112233466778999999999995 89999999999999999887 889999


Q ss_pred             CCCceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         771 HKDEIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       771 h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      |.+.|++++|+|++.+ |+||+.||+|++||
T Consensus       311 H~~~V~~l~~s~d~~~-l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         311 HDNRVSCLGVTDDGMA-VATGSWDSFLKIWN  340 (340)
T ss_dssp             CSSCEEEEEECTTSSC-EEEEETTSCEEEEC
T ss_pred             CCCCEEEEEEeCCCCE-EEEEccCCEEEEeC
Confidence            9999999999999986 88999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.1e-18  Score=193.08  Aligned_cols=218  Identities=15%  Similarity=0.208  Sum_probs=150.6

Q ss_pred             cccceeeeEeeccC----CcEEEEEeCCCcEEEEEcCCCCcc---------------cCeeeccCCCCCeeEEEEccCCC
Q psy4578         620 KLRLLIDVAWHLLH----ESLFGSVADDQKLMIWDTRSHNVS---------------KPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       620 ~~~~V~~v~~sp~~----~~~lasgs~DG~I~IWd~~~~~~~---------------~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      +...+..++|.+..    +.++++++.||.+++|++......               ........+...+.+++|+|++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-
Confidence            44567788887642    467899999999999998532100               0112223455678999999987 


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCC---CCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc---EE
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVS---KPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT---VA  754 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~---~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~---I~  754 (860)
                       ++++|+.||+               |++||+.+++..   .....+.+|...|++++|+|+|. +|++|+.|++   |+
T Consensus       197 -~lasgs~Dg~---------------i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~  259 (393)
T d1sq9a_         197 -LIATGFNNGT---------------VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCIT  259 (393)
T ss_dssp             -EEEEECTTSE---------------EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEE
T ss_pred             -EEEEEeCCCc---------------EEEEeecccccccccccccccccccceEEEcccccccc-eeeeecCCCCcceee
Confidence             4899999999               999999876321   12234567999999999999999 4899998875   99


Q ss_pred             EEeCCCCceeeEEe-------------ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCC--
Q psy4578         755 LWDLRNLKLKLHSF-------------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP--  819 (860)
Q Consensus       755 IWDl~~~~~~~~~~-------------~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~--  819 (860)
                      +||++++.. +..+             .+|.+.|++++|+|+|++ |+|||.||+|++||+.++.+......+.+...  
T Consensus       260 lwd~~~g~~-~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~-l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~  337 (393)
T d1sq9a_         260 LYETEFGER-IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIE  337 (393)
T ss_dssp             EEETTTCCE-EEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEEEECCGGGCSSG
T ss_pred             eccccccee-eeeeccccccccceeeeecccCceeeeccCCCCCe-eEEECCCCEEEEEECCCCCEEEEECCcCCcccCC
Confidence            999998775 4443             479999999999999985 89999999999999998655443322111000  


Q ss_pred             --ccEEEec---CccCceEEEEEccCC---------CeEEEEEeCCCeEeec
Q psy4578         820 --ELLFIHG---GHTAKISDFSWNPNE---------PWVICSVSEDNIMQKP  857 (860)
Q Consensus       820 --~~i~~~~---~h~~~I~~i~~spdg---------~~Llasgs~Dg~IrI~  857 (860)
                        .......   ...+.+.++.|.+.+         ...+++.+.|+.||+.
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~  389 (393)
T d1sq9a_         338 EDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF  389 (393)
T ss_dssp             GGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred             ccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEE
Confidence              0000000   012346677776543         1236788888888873

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=7e-19  Score=187.68  Aligned_cols=224  Identities=17%  Similarity=0.251  Sum_probs=153.5

Q ss_pred             EEEeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCe
Q psy4578         603 VMYLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEY  681 (860)
Q Consensus       603 il~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~  681 (860)
                      .+.+|+....+. ..+.+|.+.|++++|+|  +.+|++|+.||.|++|+........ ......+........+++++. 
T Consensus        34 ~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~--~~~l~s~s~D~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-  109 (355)
T d1nexb2          34 MIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIKKGCCTH-VFEGHNSTVRCLDIVEYKNIK-  109 (355)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEEET--TTEEEEEETTCCEEEEETTTTEEEE-EECCCSSCEEEEEEEEETTEE-
T ss_pred             eEEEEECCCCcEEEEEECCCCCEEEEEEcC--CCEEEEEeccccccccccccccccc-ccccccccccccccccccccc-
Confidence            455666655554 44456788999999997  4689999999999999998642211 111112223334445555554 


Q ss_pred             EEEEEeCCCceeeeccccc-------------------------------------------------------------
Q psy4578         682 ILATGSADKTQFEVEEEEE-------------------------------------------------------------  700 (860)
Q Consensus       682 llasgs~Dg~i~~~~~~~~-------------------------------------------------------------  700 (860)
                      .+++|+.|+.+.+|+....                                                             
T Consensus       110 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~  189 (355)
T d1nexb2         110 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA  189 (355)
T ss_dssp             EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecc
Confidence            3666666666666543211                                                             


Q ss_pred             -----------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCC
Q psy4578         701 -----------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADK  751 (860)
Q Consensus       701 -----------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg  751 (860)
                                                   +..++.|++||..++   ..+..+.+|...|.+++|++  . .+++|+.||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~~~--~-~l~~~~~dg  263 (355)
T d1nexb2         190 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---ELMYTLQGHTALVGLLRLSD--K-FLVSAAADG  263 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCCCEEEECS--S-EEEEECTTS
T ss_pred             cccceeeeeccccccccccccccceeeecccccceEEeeecccc---cccccccccccccccccccc--c-eeeeeeccc
Confidence                                         123566777777665   56677889999999999975  4 589999999


Q ss_pred             cEEEEeCCCCceeeEEeccCCCceEEEE-EcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccC
Q psy4578         752 TVALWDLRNLKLKLHSFESHKDEIFQVQ-WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA  830 (860)
Q Consensus       752 ~I~IWDl~~~~~~~~~~~~h~~~V~~l~-fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~  830 (860)
                      .|++||+++...   .+..|...+.++. +++++. +++ ++.||.|++||+++++....             ...+|.+
T Consensus       264 ~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~-~l~-~g~d~~i~vwd~~tg~~~~~-------------~~~~~~~  325 (355)
T d1nexb2         264 SIRGWDANDYSR---KFSYHHTNLSAITTFYVSDN-ILV-SGSENQFNIYNLRSGKLVHA-------------NILKDAD  325 (355)
T ss_dssp             EEEEEETTTCCE---EEEEECTTCCCCCEEEECSS-EEE-EEETTEEEEEETTTCCBCCS-------------CTTTTCS
T ss_pred             ccccccccccce---ecccccCCceEEEEEcCCCC-EEE-EEeCCEEEEEECCCCCEEEE-------------EecCCCC
Confidence            999999998764   3445666666654 455554 454 45699999999998654322             2346889


Q ss_pred             ceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         831 KISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       831 ~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .|++++|+|+  .++++++.||.+.|
T Consensus       326 ~V~~v~~~~~--~~~~~~s~dg~~~l  349 (355)
T d1nexb2         326 QIWSVNFKGK--TLVAAVEKDGQSFL  349 (355)
T ss_dssp             EEEEEEEETT--EEEEEEESSSCEEE
T ss_pred             CEEEEEEcCC--eEEEEEECCCcEEE
Confidence            9999999986  47889999998654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.71  E-value=2.4e-16  Score=169.26  Aligned_cols=174  Identities=10%  Similarity=0.120  Sum_probs=138.3

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEe-CCC-cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVA-DDQ-KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs-~DG-~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      -+++|+...+...++ .|...|.+++|+| +++.|++++ .+| .|++||..++.    ...+..|...+.+++|+|+|+
T Consensus        25 ~v~v~d~~~~~~~~~-~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~----~~~~~~~~~~v~~~~~spdg~   98 (360)
T d1k32a3          25 QAFIQDVSGTYVLKV-PEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGK----AEKFEENLGNVFAMGVDRNGK   98 (360)
T ss_dssp             EEEEECTTSSBEEEC-SCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCC----EEECCCCCCSEEEEEECTTSS
T ss_pred             eEEEEECCCCcEEEc-cCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCc----EEEeeCCCceEEeeeeccccc
Confidence            366777777766654 6888999999999 666666554 443 79999998743    456678999999999999999


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEE---------eeCCC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILAT---------GSADK  751 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llas---------gs~Dg  751 (860)
                      + +++++.++.               +++|+..++   .....+..|...+.+++|+|+|++++++         +..++
T Consensus        99 ~-l~~~~~~~~---------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~  159 (360)
T d1k32a3          99 F-AVVANDRFE---------------IMTVDLETG---KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ  159 (360)
T ss_dssp             E-EEEEETTSE---------------EEEEETTTC---CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             c-cceeccccc---------------ccccccccc---ceeeeeecccccccchhhccceeeeeeeccccccceeecccc
Confidence            6 888888888               999999886   5566777888999999999999964333         23455


Q ss_pred             cEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         752 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       752 ~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      .+++||..++..  .....+...+..++|+|+|++ |++++.|+.+.+||...
T Consensus       160 ~~~v~d~~~~~~--~~~~~~~~~~~~~~~spdg~~-l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         160 AIHVYDMEGRKI--FAATTENSHDYAPAFDADSKN-LYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             EEEEEETTTTEE--EECSCSSSBEEEEEECTTSCE-EEEEESCCCCCEECSSS
T ss_pred             ceeeeccccCce--eeecccccccccccccCCCCE-EEEEeCCCceEcccccc
Confidence            699999998764  455567788999999999986 88999999999998654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.71  E-value=1.9e-16  Score=170.10  Aligned_cols=190  Identities=13%  Similarity=0.110  Sum_probs=148.8

Q ss_pred             eeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCC
Q psy4578         625 IDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYD  704 (860)
Q Consensus       625 ~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~d  704 (860)
                      ..-.|+|.+++++|+++ +|.|.+||...+.   .. .+ +|...|.+++|+|||+.++.++..+|.             
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~---~~-~~-~~~~~v~~~~~spDg~~l~~~~~~~g~-------------   66 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY---VL-KV-PEPLRIRYVRRGGDTKVAFIHGTREGD-------------   66 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSB---EE-EC-SCCSCEEEEEECSSSEEEEEEEETTEE-------------
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCc---EE-Ec-cCCCCEEEEEECCCCCEEEEEEcCCCC-------------
Confidence            34679997788888876 5799999998642   22 33 689999999999999986666666542             


Q ss_pred             CcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCC
Q psy4578         705 QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN  784 (860)
Q Consensus       705 g~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g  784 (860)
                       .|++||..++    ....+..|...|.+++|+|+|++ +++++.++.+++|+..+... ...+..|...+.+++|+|+|
T Consensus        67 -~v~v~d~~~~----~~~~~~~~~~~v~~~~~spdg~~-l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg  139 (360)
T d1k32a3          67 -FLGIYDYRTG----KAEKFEENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNS  139 (360)
T ss_dssp             -EEEEEETTTC----CEEECCCCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTS
T ss_pred             -EEEEEECCCC----cEEEeeCCCceEEeeeecccccc-cceeccccccccccccccce-eeeeecccccccchhhccce
Confidence             2899999875    34567789999999999999995 88999999999999999886 67778888999999999999


Q ss_pred             CCEEEEE---------ECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         785 ETILASS---------GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       785 ~~lL~tg---------s~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      ++++++.         ..++.+++||+.+...               .....|...+..++|+|+|++ +++++.++.++
T Consensus       140 ~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~---------------~~~~~~~~~~~~~~~spdg~~-l~~~s~~~~~~  203 (360)
T d1k32a3         140 RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI---------------FAATTENSHDYAPAFDADSKN-LYYLSYRSLDP  203 (360)
T ss_dssp             CEEEEEEEECSSTTCSCCEEEEEEEETTTTEE---------------EECSCSSSBEEEEEECTTSCE-EEEEESCCCCC
T ss_pred             eeeeeeccccccceeeccccceeeeccccCce---------------eeecccccccccccccCCCCE-EEEEeCCCceE
Confidence            9743332         2345799999887332               233456678889999999996 56777777665


Q ss_pred             e
Q psy4578         856 K  856 (860)
Q Consensus       856 I  856 (860)
                      +
T Consensus       204 ~  204 (360)
T d1k32a3         204 S  204 (360)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=9.6e-17  Score=168.00  Aligned_cols=167  Identities=18%  Similarity=0.344  Sum_probs=125.3

Q ss_pred             hhhhhhhhhcccceeeeEeeccCCcEEEEEeCC-CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCC
Q psy4578         611 RAQICQLLDKLRLLIDVAWHLLHESLFGSVADD-QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD  689 (860)
Q Consensus       611 ~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~D-G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~D  689 (860)
                      .............+  .++++ ++..+++++.| +.+++|++....  ........|.+.+++++|+|++.+ |++|+.|
T Consensus       110 ~~~~~~~~~~~~~~--~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~-l~~g~~d  183 (287)
T d1pgua2         110 TGDIIKSVRLNSPG--SAVSL-SQNYVAVGLEEGNTIQVFKLSDLE--VSFDLKTPLRAKPSYISISPSETY-IAAGDVM  183 (287)
T ss_dssp             TCCEEEEEECSSCE--EEEEE-CSSEEEEEETTTSCEEEEETTEEE--EEEECSSCCSSCEEEEEECTTSSE-EEEEETT
T ss_pred             ceeeeeecccccee--eeeec-cCcceeeeccccceeeeeeccccc--eeeeeeeccCCceeEEEeccCccc-ccccccc
Confidence            33333333333344  34565 45566666665 479999987531  122223457789999999999985 8999999


Q ss_pred             CceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCC---------cEEEEeeCCCcEEEEeCCC
Q psy4578         690 KTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE---------YILATGSADKTVALWDLRN  760 (860)
Q Consensus       690 g~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~---------~llasgs~Dg~I~IWDl~~  760 (860)
                      |.               |++||+.++.  .....+.+|...|.+++|+|.+.         .++++|+.||+|++||++.
T Consensus       184 g~---------------i~i~d~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         184 GK---------------ILLYDLQSRE--VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR  246 (287)
T ss_dssp             SC---------------EEEEETTTTE--EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred             cc---------------ccceeecccc--cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCC
Confidence            98               9999998762  12234568999999999998542         3599999999999999987


Q ss_pred             CceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEEC
Q psy4578         761 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL  802 (860)
Q Consensus       761 ~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl  802 (860)
                      ....+..+.+|...|++++|+|++.  ++|+|.||+|++|++
T Consensus       247 ~~~~~~~~~~h~~~V~~v~~~~~~~--l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         247 PMKIIKALNAHKDGVNNLLWETPST--LVSSGADACIKRWNV  286 (287)
T ss_dssp             TTCCEEETTSSTTCEEEEEEEETTE--EEEEETTSCEEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEECCCCE--EEEEECCCeEEEEEE
Confidence            6655777889999999999999874  789999999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.67  E-value=2.4e-16  Score=176.11  Aligned_cols=247  Identities=11%  Similarity=0.101  Sum_probs=168.2

Q ss_pred             EEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCccc--CeeeccCCCCCeeEEEEccCC
Q psy4578         602 EVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSK--PSHTVDAHTAEVNCLSFNPYS  679 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~--~~~~~~~h~~~V~~l~~sp~g  679 (860)
                      ..+.+|+....++...+..+..+..++|+| +++++++++.||+|++||+.+++...  .+....+|.+.+.+++|+|||
T Consensus        42 g~v~vwD~~t~~~~~~l~~g~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG  120 (426)
T d1hzua2          42 GQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED  120 (426)
T ss_dssp             TEEEEEETTTCSEEEEEECCSSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTT
T ss_pred             CEEEEEECCCCcEEEEEeCCCCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCC
Confidence            345667777777777777777899999999 78889999999999999999864321  122334566677788899999


Q ss_pred             CeEEEEEeCCCceeeecccccc----------------------------cCCCc-----------EEEEeCCCCCCCCC
Q psy4578         680 EYILATGSADKTQFEVEEEEEE----------------------------NYDQK-----------LMIWDTRSHNVSKP  720 (860)
Q Consensus       680 ~~llasgs~Dg~i~~~~~~~~~----------------------------~~dg~-----------I~iwDl~~~~~~~~  720 (860)
                      +++++++..++++.+|+.....                            ..++.           +.+++.....  ..
T Consensus       121 ~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~--~~  198 (426)
T d1hzua2         121 RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID--NL  198 (426)
T ss_dssp             TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS--SC
T ss_pred             CEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccc--ce
Confidence            9888888889998888655320                            11222           2222222221  12


Q ss_pred             eeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-------------------------------------
Q psy4578         721 SHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-------------------------------------  763 (860)
Q Consensus       721 ~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-------------------------------------  763 (860)
                      .....++...+..+.|+|+++++++++..+..+.+||..+...                                     
T Consensus       199 ~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  278 (426)
T d1hzua2         199 TVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI  278 (426)
T ss_dssp             EEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEE
T ss_pred             eeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceE
Confidence            2233457778889999999998666666666677776654321                                     


Q ss_pred             ----------------eeEEeccCCCceEEEEEcCCCCCEEE------EEECCCcEEEEECCCCCcccccccccCCCCcc
Q psy4578         764 ----------------KLHSFESHKDEIFQVQWSPHNETILA------SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL  821 (860)
Q Consensus       764 ----------------~~~~~~~h~~~V~~l~fsp~g~~lL~------tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~  821 (860)
                                      ....+.+|...+..++|+|+|+++.+      +++.|++|++||+.+++........     ..
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~-----~~  353 (426)
T d1hzua2         279 SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI-----AE  353 (426)
T ss_dssp             EEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH-----HH
T ss_pred             EEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEecc-----ch
Confidence                            12345678888999999999997332      3456789999999987654332100     00


Q ss_pred             EEEecCccCceEEEEEccCCCeEEEEE----eCCCeEee
Q psy4578         822 LFIHGGHTAKISDFSWNPNEPWVICSV----SEDNIMQK  856 (860)
Q Consensus       822 i~~~~~h~~~I~~i~~spdg~~Llasg----s~Dg~IrI  856 (860)
                      ...+..|...|.+++|||||+++++++    +.++.|+|
T Consensus       354 ~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v  392 (426)
T d1hzua2         354 WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV  392 (426)
T ss_dssp             HHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEE
T ss_pred             hcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEE
Confidence            012335677899999999999887775    35676765

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.7e-15  Score=158.48  Aligned_cols=171  Identities=22%  Similarity=0.378  Sum_probs=128.6

Q ss_pred             Eeeccchhhh-hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEE
Q psy4578         605 YLENKTRAQI-CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  683 (860)
Q Consensus       605 ~l~n~~~~~l-~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ll  683 (860)
                      .+++...... ..+.+|...+..+.+   ++..+++|+.||.|++||+..+   ..+..+.+|...+.++.+++  + ++
T Consensus       160 ~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~--~-~l  230 (342)
T d2ovrb2         160 KVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELKD--N-IL  230 (342)
T ss_dssp             EEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEET--T-EE
T ss_pred             EEeecccceeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccc---eeeeEecccccceeEEecCC--C-EE
Confidence            3444443333 233344444444433   5788999999999999999874   55778889999999998875  4 58


Q ss_pred             EEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce
Q psy4578         684 ATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL  763 (860)
Q Consensus       684 asgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~  763 (860)
                      ++|+.||.               |++||+...+....+.....|...+.++.+++  . ++++|+.||+|++||+++++.
T Consensus       231 ~s~s~d~~---------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~s~s~Dg~i~iwd~~tg~~  292 (342)
T d2ovrb2         231 VSGNADST---------------VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLKTGEF  292 (342)
T ss_dssp             EEEETTSC---------------EEEEETTTCCEEEEECSTTSCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCCE
T ss_pred             EEEcCCCE---------------EEEEecccccccccccccceeeeceeecccCC--C-eeEEEcCCCEEEEEECCCCCE
Confidence            99999998               99999987633223333345667778887765  4 589999999999999999886


Q ss_pred             eeEEe-----ccCCCceEEEEEcCCCCCEEEEEECCCc----EEEEECCC
Q psy4578         764 KLHSF-----ESHKDEIFQVQWSPHNETILASSGTDRR----LHVWDLSK  804 (860)
Q Consensus       764 ~~~~~-----~~h~~~V~~l~fsp~g~~lL~tgs~Dg~----I~iWdl~~  804 (860)
                       +..+     .+|...|++++|+|++. ++++|+.||+    |++||++.
T Consensus       293 -i~~~~~~~~~~~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         293 -IRNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             -EEEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCC
T ss_pred             -EEEEecccCCCCCCCEEEEEECCCCC-EEEEEeCCCCCeeEEEEEeCCC
Confidence             5554     35778899999999997 5899998885    99999874

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=3.1e-15  Score=157.47  Aligned_cols=88  Identities=13%  Similarity=0.087  Sum_probs=73.4

Q ss_pred             CeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcC
Q psy4578         659 PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNP  738 (860)
Q Consensus       659 ~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp  738 (860)
                      .++..++|...|++|+|+|++++ |++|+.||+               |++||+.+......+....+|.+.|.+++|+|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~-L~s~s~Dg~---------------v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~   66 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSL-LLITSWDGS---------------LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID   66 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTE-EEEEETTSE---------------EEEEEEETTTTEEEEEEEEECSSCEEEEEEEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCE-EEEEECCCe---------------EEEEEccCCCcceEEEEecCCCCCEEEEEEeC
Confidence            35566789999999999999985 899999999               99999987643333444457999999999999


Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCc
Q psy4578         739 YSEYILATGSADKTVALWDLRNLK  762 (860)
Q Consensus       739 ~g~~llasgs~Dg~I~IWDl~~~~  762 (860)
                      ++..++++|+.||.|++|+.....
T Consensus        67 ~~~~~l~sg~~d~~v~~w~~~~~~   90 (342)
T d1yfqa_          67 NTDLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             SSSEEEEEEETTSCEEEECSSSSS
T ss_pred             CCCCEEEEcccccceeeeeccccc
Confidence            877679999999999999987554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.61  E-value=4e-14  Score=147.63  Aligned_cols=228  Identities=11%  Similarity=0.071  Sum_probs=164.2

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEE
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYIL  683 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~ll  683 (860)
                      +.+|+..+.++...+.....+..++|+|++..++++++.++.|++||+.++   ..+..+..+. .+..+.|++++.+++
T Consensus        14 v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~---~~~~~~~~~~-~~~~~~~~~~~~~~~   89 (301)
T d1l0qa2          14 ISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-SPQGVAVSPDGKQVY   89 (301)
T ss_dssp             EEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSSEEE
T ss_pred             EEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---ceeeeeeccc-ccccccccccccccc
Confidence            456677777777777766778999999944445577888999999999885   4455555554 568999999999878


Q ss_pred             EEEeCCCceeeeccccc---------------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEE
Q psy4578         684 ATGSADKTQFEVEEEEE---------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSF  736 (860)
Q Consensus       684 asgs~Dg~i~~~~~~~~---------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~  736 (860)
                      +++..++.+.+|+....                           ...++.+.+|+..+.   .....+. +...+.++++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~  165 (301)
T d1l0qa2          90 VTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK---AVINTVS-VGRSPKGIAV  165 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CCSSEEEEEE
T ss_pred             ccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeecccc---ceeeecc-cCCCceEEEe
Confidence            88878877777765433                           123455777887765   3334443 4456889999


Q ss_pred             cCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE--CCCcEEEEECCCCCcccccccc
Q psy4578         737 NPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDA  814 (860)
Q Consensus       737 sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs--~Dg~I~iWdl~~~~~~~~~~~~  814 (860)
                      +|++..+++++..++.+.+|+...... ..... ....+..++|++++..+++++.  .++.|.+||..+.+.       
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~-------  236 (301)
T d1l0qa2         166 TPDGTKVYVANFDSMSISVIDTVTNSV-IDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI-------  236 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE-------
T ss_pred             eccccceeeecccccccccccccceee-eeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeE-------
Confidence            999997555555667788888777664 44443 4566788999999997555543  347899999988443       


Q ss_pred             cCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         815 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       815 ~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                             +.... +...+.+++|+|||++++++++.|+.|+|
T Consensus       237 -------~~~~~-~~~~~~~va~spdg~~l~va~~~~~~i~v  270 (301)
T d1l0qa2         237 -------TARIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSV  270 (301)
T ss_dssp             -------EEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             -------EEEEc-CCCCEEEEEEeCCCCEEEEEECCCCeEEE
Confidence                   22222 23568999999999998889999998875

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.6e-15  Score=151.67  Aligned_cols=195  Identities=19%  Similarity=0.364  Sum_probs=140.0

Q ss_pred             eeeeecceeecccceeEEEEeeccchhhhhh-hhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCccc------
Q psy4578         586 LNFFKQGYFKGTHHIEEVMYLENKTRAQICQ-LLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSK------  658 (860)
Q Consensus       586 ~~ll~~G~~~Gs~~l~~il~l~n~~~~~l~~-l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~------  658 (860)
                      .+.++.|..+|.      +.+|+....+... +.+|.+.|++++|+   +++|++|+.||.|++|++..+....      
T Consensus        25 ~~~l~sgs~Dg~------i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~   95 (293)
T d1p22a2          25 DQKIVSGLRDNT------IKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTLIHHC   95 (293)
T ss_dssp             SSEEEEEESSSC------EEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEECCCC
T ss_pred             CCEEEEEeCCCe------EEEEECCCCcEEEEEecCCCCEeeeecc---cceeecccccccccccccccccccccccccc
Confidence            344444544443      4556665555444 44577899999885   5799999999999999986542110      


Q ss_pred             ----------------------------------CeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc----
Q psy4578         659 ----------------------------------PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE----  700 (860)
Q Consensus       659 ----------------------------------~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~----  700 (860)
                                                        ....+..|...+.++.+.+  . .+++++.|+.+..|+....    
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~~~s~d~~i~~~d~~~~~~~~  172 (293)
T d1p22a2          96 EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K-YIVSASGDRTIKVWNTSTCEFVR  172 (293)
T ss_dssp             SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTTCCEEE
T ss_pred             cccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--c-ccccccCCCceeeecCCCCcEEE
Confidence                                              0112234556666666654  3 4678889999988877543    


Q ss_pred             ---------------------ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCC
Q psy4578         701 ---------------------ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLR  759 (860)
Q Consensus       701 ---------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~  759 (860)
                                           +..||.|++||+++.   ..+....+|...+.++  ++++. .+++|+.||.|++||+.
T Consensus       173 ~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~--~~~~~-~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         173 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCI--RFDNK-RIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEE--ECCSS-EEEEEETTSCEEEEEHH
T ss_pred             EEcccccccccccCCCCeEEEecCCCEEEEEecccc---eeeeeecccceeeeec--cccce-EEEEEcCCCEEEEEECC
Confidence                                 246899999999986   6677788888888764  45566 59999999999999975


Q ss_pred             CC--------ceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEE
Q psy4578         760 NL--------KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  801 (860)
Q Consensus       760 ~~--------~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWd  801 (860)
                      ..        ...+..+.+|.+.|++++|+  +.+ |+|||.||+|++||
T Consensus       247 ~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~-l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQ-IVSSSHDDTILIWD  293 (293)
T ss_dssp             HHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSC-EEECCSSSEEEEEC
T ss_pred             CCccccccCCceeeEEecCCCCCEEEEEEc--CCE-EEEEecCCEEEEeC
Confidence            32        12367788999999999995  444 89999999999997

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=3.2e-14  Score=159.32  Aligned_cols=188  Identities=9%  Similarity=0.029  Sum_probs=142.6

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR  713 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~  713 (860)
                      +-++++.+.||+|.|||..++   +.+..+..+ ..+..++|+|||++ +++++.||+               +++||+.
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~---~v~~~~~~g-~~~~~v~fSpDG~~-l~~~s~dg~---------------v~~~d~~   91 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTY---EIKTVLDTG-YAVHISRLSASGRY-LFVIGRDGK---------------VNMIDLW   91 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTC---CEEEEEECS-SCEEEEEECTTSCE-EEEEETTSE---------------EEEEETT
T ss_pred             cEEEEEEcCCCEEEEEECCCC---cEEEEEeCC-CCeeEEEECCCCCE-EEEEcCCCC---------------EEEEEee
Confidence            344689999999999999985   556666655 46999999999997 678888998               9999998


Q ss_pred             CCCCCCCee---eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc-----------CCCceEEEE
Q psy4578         714 SHNVSKPSH---TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES-----------HKDEIFQVQ  779 (860)
Q Consensus       714 ~~~~~~~~~---~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~-----------h~~~V~~l~  779 (860)
                      +++. ....   ...+|.+.+.+..|+|||++++++++.+++|++||..+++. +..+..           +......+.
T Consensus        92 t~~~-~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~  169 (432)
T d1qksa2          92 MKEP-TTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAIL  169 (432)
T ss_dssp             SSSC-CEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEE
T ss_pred             CCCc-eEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc-eeeeccCCccccceeccCCCceeEEE
Confidence            7642 2222   22345556666778899998788999999999999998876 444433           345677889


Q ss_pred             EcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         780 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       780 fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++|+|..++++...++.|.+||....+...            +.. ..+...+.+++|+|+|+++++++..++.+.+
T Consensus       170 ~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~------------~~~-i~~g~~~~~~~~spdg~~~~va~~~~~~v~v  233 (432)
T d1qksa2         170 ASHYRPEFIVNVKETGKILLVDYTDLNNLK------------TTE-ISAERFLHDGGLDGSHRYFITAANARNKLVV  233 (432)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEETTCSSEEE------------EEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred             ECCCCCEEEEEEccCCeEEEEEccCCCcce------------EEE-EcccCccccceECCCCCEEEEeccccceEEE
Confidence            999999877888889999999987643211            111 1345668899999999998888887777765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.9e-13  Score=144.85  Aligned_cols=216  Identities=7%  Similarity=0.066  Sum_probs=130.1

Q ss_pred             hhhhhhhcccceeeeEeeccCCcEE-EEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         613 QICQLLDKLRLLIDVAWHLLHESLF-GSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       613 ~l~~l~~~~~~V~~v~~sp~~~~~l-asgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      .+.+...+.+.+.+++|+| ++++| +++..|+.|++|++..............+...+..++|+|+|+++++++..++.
T Consensus        28 ~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~  106 (333)
T d1ri6a_          28 TLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGN  106 (333)
T ss_dssp             EEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTE
T ss_pred             EEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCc
Confidence            4556677889999999999 56555 566668999999998643222222222345567889999999986665555666


Q ss_pred             eeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeE-----
Q psy4578         692 QFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH-----  766 (860)
Q Consensus       692 i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~-----  766 (860)
                                     +.+|+...... ........+...+.++.++|+++++++++..+..|.+|+.........     
T Consensus       107 ---------------v~~~~~~~~~~-~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  170 (333)
T d1ri6a_         107 ---------------VSVTRLEDGLP-VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE  170 (333)
T ss_dssp             ---------------EEEEEEETTEE-EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             ---------------eeeeccccccc-eecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee
Confidence                           77777655421 222233445666778888888886555555566788887655432110     


Q ss_pred             EeccCCCceEEEEEcCCC-----------------------------------------------------CCEEEEEEC
Q psy4578         767 SFESHKDEIFQVQWSPHN-----------------------------------------------------ETILASSGT  793 (860)
Q Consensus       767 ~~~~h~~~V~~l~fsp~g-----------------------------------------------------~~lL~tgs~  793 (860)
                      ...........++|++++                                                     +++++++..
T Consensus       171 ~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~  250 (333)
T d1ri6a_         171 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT  250 (333)
T ss_dssp             EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred             eeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeeccc
Confidence            011122333444454444                                                     443333334


Q ss_pred             CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         794 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       794 Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ++.+.+|++......           ........+...+.+++|+|||++|++++++++.|+|
T Consensus       251 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v  302 (333)
T d1ri6a_         251 ASLITVFSVSEDGSV-----------LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISV  302 (333)
T ss_dssp             TTEEEEEEECTTSCC-----------EEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred             CCeEEEEEEcCCCCE-----------EEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEE
Confidence            444444444332111           1111112234557789999999998888888888875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=1.5e-13  Score=153.91  Aligned_cols=187  Identities=11%  Similarity=0.031  Sum_probs=142.1

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcc--cCeeeccCCCCCeeEEEEccCCC
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVS--KPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~--~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      .+.+|+..+.++...+..+..+..++|+| +++++++++.||.|++||+.+++..  ..+....+|.+.+.+..|+|||+
T Consensus        43 ~v~v~D~~t~~v~~~~~~g~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~  121 (432)
T d1qksa2          43 QIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK  121 (432)
T ss_dssp             EEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTT
T ss_pred             EEEEEECCCCcEEEEEeCCCCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCC
Confidence            46677777777777776667899999999 8899999999999999999875421  12233345566677778899999


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecC-----------CCCCeEEEEEcCCCCcEEEEeeC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDA-----------HTAEVNCLSFNPYSEYILATGSA  749 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~-----------h~~~I~sl~~sp~g~~llasgs~  749 (860)
                      +++++++.+++               |++||..++   ..+..+..           +......+.++|+|..++++.+.
T Consensus       122 ~l~vs~~~~~~---------------v~i~d~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~  183 (432)
T d1qksa2         122 YAIAGAYWPPQ---------------YVIMDGETL---EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  183 (432)
T ss_dssp             EEEEEEEETTE---------------EEEEETTTC---CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             EEEEEcCCCCe---------------EEEEeCccc---cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc
Confidence            98899999998               999999876   33333322           34566788999999987788888


Q ss_pred             CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         750 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       750 Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      ++.|.+||..+........-.+...+.+++|+|+|+++++++..++.+.+||..+....
T Consensus       184 ~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~  242 (432)
T d1qksa2         184 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  242 (432)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEE
Confidence            99999999988765222222356678999999999986666667789999998875443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.45  E-value=3.7e-12  Score=132.35  Aligned_cols=180  Identities=12%  Similarity=0.155  Sum_probs=140.3

Q ss_pred             EEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCC
Q psy4578         637 FGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHN  716 (860)
Q Consensus       637 lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~  716 (860)
                      +++++.|++|.+||+.++   +.+..+.. ...+..++|+|+|++++++++.++.               |++||+.++ 
T Consensus         5 yV~~~~~~~v~v~D~~t~---~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~---------------i~v~d~~t~-   64 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSN---KVTATIPV-GSNPMGAVISPDGTKVYVANAHSND---------------VSIIDTATN-   64 (301)
T ss_dssp             EEEETTTTEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTE---------------EEEEETTTT-
T ss_pred             EEEECCCCEEEEEECCCC---eEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCE---------------EEEEECCCC-
Confidence            567788999999999985   34444433 3557899999999988788888887               999999887 


Q ss_pred             CCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCc
Q psy4578         717 VSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR  796 (860)
Q Consensus       717 ~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~  796 (860)
                        ..+..+..+. .+..++|++++.++++++..++.+.+||..++.. ...+. +.....+++|+|+|..+++++..++.
T Consensus        65 --~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~  139 (301)
T d1l0qa2          65 --NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKT  139 (301)
T ss_dssp             --EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             --ceeeeeeccc-cccccccccccccccccccccceeeeccccccee-eeecc-ccccceEEEeecCCCeeeeeeccccc
Confidence              5566666554 5789999999998788888899999999998875 55555 44567889999999987778888999


Q ss_pred             EEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         797 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       797 I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      +.+|+..+...              ..... +...+..++++|++.++++++.+++.+.+
T Consensus       140 ~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (301)
T d1l0qa2         140 VSVINTVTKAV--------------INTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISV  184 (301)
T ss_dssp             EEEEETTTTEE--------------EEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeeccccce--------------eeecc-cCCCceEEEeeccccceeeeccccccccc
Confidence            99999987432              22222 33557889999999987777777666654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.45  E-value=3.3e-13  Score=150.19  Aligned_cols=196  Identities=12%  Similarity=0.102  Sum_probs=135.1

Q ss_pred             eEeeccCCc-EEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCC
Q psy4578         627 VAWHLLHES-LFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQ  705 (860)
Q Consensus       627 v~~sp~~~~-~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg  705 (860)
                      ..+..+... ++++++.||+|+|||+.++   +.+..+..| ..+..++|+|||++ +++++.|++              
T Consensus        24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~---~~~~~l~~g-~~~~~vafSPDGk~-l~~~~~d~~--------------   84 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRDAGQIALVDGDSK---KIVKVIDTG-YAVHISRMSASGRY-LLVIGRDAR--------------   84 (426)
T ss_dssp             CCSCCCGGGEEEEEETTTTEEEEEETTTC---SEEEEEECC-SSEEEEEECTTSCE-EEEEETTSE--------------
T ss_pred             ccccCCCCeEEEEEEcCCCEEEEEECCCC---cEEEEEeCC-CCeeEEEECCCCCE-EEEEeCCCC--------------
Confidence            334443344 4577888999999999985   556677665 46899999999996 678888998              


Q ss_pred             cEEEEeCCCCCCCC--CeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc---------
Q psy4578         706 KLMIWDTRSHNVSK--PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE---------  774 (860)
Q Consensus       706 ~I~iwDl~~~~~~~--~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~---------  774 (860)
                       +++||+.+++...  .+....+|...+.+++|+|+|+++++++..++.+.+||..++.. ......|...         
T Consensus        85 -v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~  162 (426)
T d1hzua2          85 -IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPE  162 (426)
T ss_dssp             -EEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESC
T ss_pred             -EEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce-eEEeeccCCCccceeecCC
Confidence             9999998874211  11222356666777888999998778888999999999999876 5555544433         


Q ss_pred             --eEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         775 --IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       775 --V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                        ...+.+++++..++++....+.+.+++.....             .......++...+..+.|+|+|++++++...+.
T Consensus       163 ~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~  229 (426)
T d1hzua2         163 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID-------------NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSN  229 (426)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS-------------SCEEEEEECCSSEEEEEECTTSCEEEEEETTCS
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEecccc-------------ceeeEEeccCCccEeeeECCCCcEEEeeeeccc
Confidence              34455555555444444444455555444321             122233356778999999999999888887777


Q ss_pred             eEee
Q psy4578         853 IMQK  856 (860)
Q Consensus       853 ~IrI  856 (860)
                      .+.+
T Consensus       230 ~~~~  233 (426)
T d1hzua2         230 KVAV  233 (426)
T ss_dssp             EEEE
T ss_pred             ceee
Confidence            7664

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=9.7e-12  Score=131.00  Aligned_cols=193  Identities=10%  Similarity=0.051  Sum_probs=132.6

Q ss_pred             cEEEEEeCCCcEEEEEcCCCCcccCeeecc--CCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc-----------
Q psy4578         635 SLFGSVADDQKLMIWDTRSHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE-----------  701 (860)
Q Consensus       635 ~~lasgs~DG~I~IWd~~~~~~~~~~~~~~--~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~-----------  701 (860)
                      +++++++.|++|.|||+.++   +.+..+.  .+...+.+++|+|||++++++++.++.|.+|+.....           
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~---~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM---AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT---EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             eEEEEEcCCCEEEEEECCCC---eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc
Confidence            57999999999999999985   3444443  3455688999999999887888899998888764420           


Q ss_pred             ---------------------------------cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee
Q psy4578         702 ---------------------------------NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS  748 (860)
Q Consensus       702 ---------------------------------~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs  748 (860)
                                                       ..++.+.+||..++   .....+. +...+.+++|+|+|.+ +++++
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~-~~~~~~~~~~s~dg~~-l~~~~  153 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL---SRRKAFE-APRQITMLAWARDGSK-LYGLG  153 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT---EEEEEEE-CCSSCCCEEECTTSSC-EEEES
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC---eEEEecc-ccCCceEEEEcCCCCE-EEEEc
Confidence                                             12345667777765   3333443 4566889999999997 55554


Q ss_pred             CCCcEEEEeCCCCcee----------------------------------------------------------------
Q psy4578         749 ADKTVALWDLRNLKLK----------------------------------------------------------------  764 (860)
Q Consensus       749 ~Dg~I~IWDl~~~~~~----------------------------------------------------------------  764 (860)
                      .  .+.+||..++...                                                                
T Consensus       154 ~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (337)
T d1pbyb_         154 R--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             S--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             C--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE
Confidence            3  4667876544210                                                                


Q ss_pred             -eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe
Q psy4578         765 -LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW  843 (860)
Q Consensus       765 -~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~  843 (860)
                       ...+..+...+..+.++|++.. ++++  ++.|++||+.+....              ... .+...+.+++|+|||++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~i~v~d~~~~~~~--------------~~~-~~~~~~~~~~~s~dG~~  293 (337)
T d1pbyb_         232 AMREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNASI--------------KRV-PLPHSYYSVNVSTDGST  293 (337)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEEE--------------EEE-ECSSCCCEEEECTTSCE
T ss_pred             EEEEecCCCcceEEEEecccceE-EEEc--cccEEEEECCCCcEE--------------EEE-cCCCCEEEEEECCCCCE
Confidence             1112234455666777787764 4333  689999999985432              222 24567889999999996


Q ss_pred             EEEEEeCCCeEee
Q psy4578         844 VICSVSEDNIMQK  856 (860)
Q Consensus       844 Llasgs~Dg~IrI  856 (860)
                       +++++.|+.|+|
T Consensus       294 -l~v~~~~~~i~v  305 (337)
T d1pbyb_         294 -VWLGGALGDLAA  305 (337)
T ss_dssp             -EEEESBSSEEEE
T ss_pred             -EEEEeCCCcEEE
Confidence             556788888876

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=3.7e-12  Score=134.62  Aligned_cols=199  Identities=11%  Similarity=0.187  Sum_probs=137.5

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCC
Q psy4578         634 ESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTR  713 (860)
Q Consensus       634 ~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~  713 (860)
                      ...+++++.|++|++|++.+......+.. ..|.+.+.+++|+|||++|++++..|+.               |.+|++.
T Consensus         4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~---------------i~~~~i~   67 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFR---------------VLAYRIA   67 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTE---------------EEEEEEC
T ss_pred             eEEEEECCCCCcEEEEEEcCCCCeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCe---------------EEEEEEe
Confidence            34568888999999999976432233333 3577899999999999997777777888               9999987


Q ss_pred             CCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee-eEEeccCCCceEEEEEcCCCCCEEEEEE
Q psy4578         714 SHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSG  792 (860)
Q Consensus       714 ~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~-~~~~~~h~~~V~~l~fsp~g~~lL~tgs  792 (860)
                      .............+...+.+++|+|+|+++++++..++.|.+|+....... ......+...+.++.++|++++++++..
T Consensus        68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~  147 (333)
T d1ri6a_          68 PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL  147 (333)
T ss_dssp             TTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred             CCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc
Confidence            653322222233355667889999999985555556889999988766542 2333456777889999999997555555


Q ss_pred             CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         793 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       793 ~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      .+..|.+|+..........        ...............++|++++.+++.++...+...+
T Consensus       148 ~~~~i~~~~~~~~~~~~~~--------~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v  203 (333)
T d1ri6a_         148 KQDRICLFTVSDDGHLVAQ--------DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDV  203 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEE--------EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccceeeEEEeccCCcceee--------eceeeeeecCCCccEEEEeccceeEEeeccccCceEE
Confidence            6778999998764332111        0111122344567889999999987777666655443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.37  E-value=1.3e-11  Score=130.63  Aligned_cols=61  Identities=8%  Similarity=-0.046  Sum_probs=50.9

Q ss_pred             eEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc-CCCCCeeEEEEccCCCeEEEEEeCCCc
Q psy4578         627 VAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKT  691 (860)
Q Consensus       627 v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~-~h~~~V~~l~~sp~g~~llasgs~Dg~  691 (860)
                      ++|++ +++++++++.|++|.+||+.++   +.+.++. .+...+.+++|+|||++++++++.++.
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~---~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCC---CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCc
Confidence            46787 8999999999999999999985   4455554 456678999999999988888888888

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.18  E-value=1.8e-10  Score=121.08  Aligned_cols=82  Identities=13%  Similarity=0.116  Sum_probs=64.3

Q ss_pred             ecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECC
Q psy4578         724 VDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  803 (860)
Q Consensus       724 ~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~  803 (860)
                      +..+...+.++.++|++.+ ++++  ++.|++||+.+++. +.... +...+.+++|+|+|++ |++++.||.|++||..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dG~~-l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         236 VRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNAS-IKRVP-LPHSYYSVNVSTDGST-VWLGGALGDLAAYDAE  309 (337)
T ss_dssp             EEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEE-EEEEE-CSSCCCEEEECTTSCE-EEEESBSSEEEEEETT
T ss_pred             ecCCCcceEEEEecccceE-EEEc--cccEEEEECCCCcE-EEEEc-CCCCEEEEEECCCCCE-EEEEeCCCcEEEEECC
Confidence            3456667788888998885 5444  58999999999886 55554 5677899999999996 7788999999999999


Q ss_pred             CCCccccc
Q psy4578         804 KIGEEQST  811 (860)
Q Consensus       804 ~~~~~~~~  811 (860)
                      +.+....+
T Consensus       310 t~~~v~~i  317 (337)
T d1pbyb_         310 TLEKKGQV  317 (337)
T ss_dssp             TCCEEEEE
T ss_pred             CCcEEEEE
Confidence            86654443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.17  E-value=2.5e-10  Score=120.33  Aligned_cols=200  Identities=10%  Similarity=0.038  Sum_probs=127.3

Q ss_pred             EEEEeeccchhhhhhhhh--cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC------CCCCeeEE
Q psy4578         602 EVMYLENKTRAQICQLLD--KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA------HTAEVNCL  673 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~~--~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~------h~~~V~~l  673 (860)
                      ..+.+|+..+.++...+.  +...+.+++|+|++..++++++.++.|.+||+.+++.   +..+..      +...+..+
T Consensus        18 ~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~---~~~~~~~~~~~~~~~~~~~v   94 (346)
T d1jmxb_          18 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN---TFHANLSSVPGEVGRSMYSF   94 (346)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE---EEEEESCCSTTEEEECSSCE
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee---eeeecccccccccCCceEEE
Confidence            346677777777766543  3456889999995445567777899999999988533   222211      11245678


Q ss_pred             EEccCCCeEEEEEe-----------CCCceeeeccccc-------------------cc-------CCCcEEEEeCCCCC
Q psy4578         674 SFNPYSEYILATGS-----------ADKTQFEVEEEEE-------------------EN-------YDQKLMIWDTRSHN  716 (860)
Q Consensus       674 ~~sp~g~~llasgs-----------~Dg~i~~~~~~~~-------------------~~-------~dg~I~iwDl~~~~  716 (860)
                      +|+|||+++++++.           .++.+.+|+....                   ..       .++.+.+|+..++.
T Consensus        95 ~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (346)
T d1jmxb_          95 AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGK  174 (346)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCC
T ss_pred             EEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCC
Confidence            99999997555442           2333333322211                   00       12233444443221


Q ss_pred             C-----------------------------------------------------------------CCCeeeecCCCCCe
Q psy4578         717 V-----------------------------------------------------------------SKPSHTVDAHTAEV  731 (860)
Q Consensus       717 ~-----------------------------------------------------------------~~~~~~~~~h~~~I  731 (860)
                      .                                                                 .........|...+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (346)
T d1jmxb_         175 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY  254 (346)
T ss_dssp             EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             EEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeeccccee
Confidence            0                                                                 00111223456677


Q ss_pred             EEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccc
Q psy4578         732 NCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  809 (860)
Q Consensus       732 ~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~  809 (860)
                      .++.+++++.+ ++.+. ++.|.+||..+++. +.... +...+.+++|+|||++ +++++.||.|++||..+.+...
T Consensus       255 ~~~~~~~~~~~-~~~~~-~~~v~v~d~~~~~~-~~~~~-~~~~~~~va~s~DG~~-l~v~~~d~~v~v~D~~t~~~i~  327 (346)
T d1jmxb_         255 FTGLRSPKDPN-QIYGV-LNRLAKYDLKQRKL-IKAAN-LDHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLEKVK  327 (346)
T ss_dssp             EEEEECSSCTT-EEEEE-ESEEEEEETTTTEE-EEEEE-CSSCCCEEEECSSSSC-EEEESBSSEEEEEETTTTEEEE
T ss_pred             EEEEEeCCCCE-EEEec-CCeEEEEECCCCcE-EEEEc-CCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECccCCEEE
Confidence            78888888887 44444 46799999999886 55444 4557899999999997 7788899999999999865543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.07  E-value=4.7e-09  Score=112.55  Aligned_cols=132  Identities=12%  Similarity=0.055  Sum_probs=80.8

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEe----------CCCcEEEEEcCCCCcccCeeeccCCCCCe---
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVA----------DDQKLMIWDTRSHNVSKPSHTVDAHTAEV---  670 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs----------~DG~I~IWd~~~~~~~~~~~~~~~h~~~V---  670 (860)
                      ++.++....++...+.. +....+.|+| ++..+++++          .++.|.+||..+++   ....+..+....   
T Consensus        49 v~v~D~~tg~~~~~~~~-~~~~~~a~Sp-DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~---~~~~~~~~~~~~~~~  123 (373)
T d2madh_          49 QWVLDAGSGSILGHVNG-GFLPNPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL---PIADIELPDAPRFDV  123 (373)
T ss_pred             EEEEECCCCCEEEEEeC-CCCccEEEcC-CCCEEEEEeecCCcccccccceEEEEEECCCCc---EEEEEecCCcceeEe
Confidence            44445555554444332 2334799999 677666654          46789999999853   344443343332   


Q ss_pred             ----eEEEEccCCCeEEEEEe-CCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEE
Q psy4578         671 ----NCLSFNPYSEYILATGS-ADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA  745 (860)
Q Consensus       671 ----~~l~~sp~g~~llasgs-~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~lla  745 (860)
                          ..+.|+++++.+++... .++.               +.+|+....   +.    ..+.....++.++|+|..+++
T Consensus       124 ~~~~~~~~~s~dg~~~~v~~~~~~~~---------------~~~~~~~~~---~~----~~~~~~~~~~~~s~~g~~~~v  181 (373)
T d2madh_         124 GPYSWMNANTPNNADLLFFQFAAGPA---------------VGLVVQGGS---SD----DQLLSSPTCYHIHPGAPSTFY  181 (373)
T ss_pred             ccCCCcEEEEeCCCcEEEEEEcCCCc---------------eEEeeccCC---eE----EEEeccceeEEEecCCCcEEE
Confidence                45677888776443332 2333               777777654   11    223344567888888887777


Q ss_pred             EeeCCCcEEEEeCCCCc
Q psy4578         746 TGSADKTVALWDLRNLK  762 (860)
Q Consensus       746 sgs~Dg~I~IWDl~~~~  762 (860)
                      +++.||.+.+||.....
T Consensus       182 ~~~~dg~~~~~~~~~~~  198 (373)
T d2madh_         182 LLCAQGGLAKTDHAGGA  198 (373)
T ss_pred             EEcCCCeEEEEEcCCce
Confidence            88888888888876544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.02  E-value=7e-10  Score=118.06  Aligned_cols=202  Identities=16%  Similarity=0.102  Sum_probs=117.2

Q ss_pred             EEEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEE---------EeCCCcEEEEEcCCCCcccCeeeccCC----CC
Q psy4578         602 EVMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGS---------VADDQKLMIWDTRSHNVSKPSHTVDAH----TA  668 (860)
Q Consensus       602 ~il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~las---------gs~DG~I~IWd~~~~~~~~~~~~~~~h----~~  668 (860)
                      ..+++++....++..... .+....++|+|++..+.++         ++.||.|++||..+++....+.....+    ..
T Consensus        28 ~~v~v~D~~tg~~~~~~~-~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~  106 (355)
T d2bbkh_          28 TQQFVIDGEAGRVIGMID-GGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT  106 (355)
T ss_dssp             EEEEEEETTTTEEEEEEE-ECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred             CeEEEEECCCCcEEEEEE-CCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCC
Confidence            345566666665554443 2345579999944444333         245789999999986432222211111    12


Q ss_pred             CeeEEEEccCCCeEEEEE-eCCCceeeeccccc-----------------------------------------------
Q psy4578         669 EVNCLSFNPYSEYILATG-SADKTQFEVEEEEE-----------------------------------------------  700 (860)
Q Consensus       669 ~V~~l~~sp~g~~llasg-s~Dg~i~~~~~~~~-----------------------------------------------  700 (860)
                      ....++|+|+++++++.. +.+..+.+|+....                                               
T Consensus       107 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~  186 (355)
T d2bbkh_         107 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT  186 (355)
T ss_dssp             CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred             CCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEec
Confidence            335678888887644332 22233333322110                                               


Q ss_pred             -------------------------ccCCCcEEEEeCCCCCCCCCeeeecCC----------CCCeEEEEEcCCCCcEEE
Q psy4578         701 -------------------------ENYDQKLMIWDTRSHNVSKPSHTVDAH----------TAEVNCLSFNPYSEYILA  745 (860)
Q Consensus       701 -------------------------~~~dg~I~iwDl~~~~~~~~~~~~~~h----------~~~I~sl~~sp~g~~lla  745 (860)
                                               ...++.+.+|++..+.. ..+.....+          ......++++|++..+++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~  265 (355)
T d2bbkh_         187 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL  265 (355)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             ccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-EEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEE
Confidence                                     02356677777766432 111111111          122345788898886444


Q ss_pred             EeeCC---------CcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCC-EEEEEECCCcEEEEECCCCCc
Q psy4578         746 TGSAD---------KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET-ILASSGTDRRLHVWDLSKIGE  807 (860)
Q Consensus       746 sgs~D---------g~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~-lL~tgs~Dg~I~iWdl~~~~~  807 (860)
                      +....         +.|.+||..+++. +..+. +...+.+++|+|+|+. ++++++.|+.|++||..+++.
T Consensus       266 ~~~~~~~~~~~~~~~~v~v~d~~t~~~-~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         266 LVDQRDEWRHKTASRFVVVLDAKTGER-LAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCE-EEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             EeccCCceeecCCCCeEEEEeCCCCcE-EEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence            43322         4699999999886 55554 3456889999999985 456677899999999998554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.91  E-value=3.3e-08  Score=105.78  Aligned_cols=173  Identities=9%  Similarity=-0.108  Sum_probs=115.4

Q ss_pred             hhhcccceeeeEeeccCCcEEEEE----eCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCce
Q psy4578         617 LLDKLRLLIDVAWHLLHESLFGSV----ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQ  692 (860)
Q Consensus       617 l~~~~~~V~~v~~sp~~~~~lasg----s~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i  692 (860)
                      .-.+.+++.+++++|++..++++.    +.++.|.+||..++   +.+..+..+..  ..++|+|||+++++++...+. 
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg---~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~-   89 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG---SILGHVNGGFL--PNPVAAHSGSEFALASTSFSR-   89 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC---CEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCc-
Confidence            335667899999999555544442    23467999998885   44555554443  379999999985554433221 


Q ss_pred             eeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCe-------EEEEEcCCCCcEEEEe-eCCCcEEEEeCCCCcee
Q psy4578         693 FEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEV-------NCLSFNPYSEYILATG-SADKTVALWDLRNLKLK  764 (860)
Q Consensus       693 ~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I-------~sl~~sp~g~~llasg-s~Dg~I~IWDl~~~~~~  764 (860)
                           ...+..++.|.+||..++   +.+..+..+....       ..+.|+|+++.+++.. ..++.+.+|+...... 
T Consensus        90 -----~~~~~~~~~v~v~D~~t~---~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-  160 (373)
T d2madh_          90 -----IAKGKRTDYVEVFDPVTF---LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD-  160 (373)
T ss_pred             -----ccccccceEEEEEECCCC---cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE-
Confidence                 111234556999999987   4444444443332       4578889888644333 4467888998877654 


Q ss_pred             eEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         765 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       765 ~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      .    .+.....++.++|+|+.++++++.||.+.+|+.......
T Consensus       161 ~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~  200 (373)
T d2madh_         161 D----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG  200 (373)
T ss_pred             E----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence            2    233456788999999988889999999999998875543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=5.7e-07  Score=91.40  Aligned_cols=212  Identities=13%  Similarity=0.079  Sum_probs=131.9

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEE-EEeCCCc--EEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCC
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFG-SVADDQK--LMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE  680 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~la-sgs~DG~--I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~  680 (860)
                      +++-+........+..+...+.+.+|+| +++.|| +...++.  +.+.+...+    ....+..+.+......|+|+|.
T Consensus        21 l~i~d~dG~~~~~l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          21 LRVSDYDGYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANG----AVRQVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             EEEEETTSCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC----CEEEEECCSSCEEEEEECTTSS
T ss_pred             EEEEcCCCCCcEEEecCCCceeeeEECC-CCCEEEEEEeeccCcceeeeecccC----ceeEEeeeecccccceecCCCC
Confidence            4454555666666777778889999999 555555 4444443  444455442    2334456678889999999999


Q ss_pred             eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEE--eC
Q psy4578         681 YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALW--DL  758 (860)
Q Consensus       681 ~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IW--Dl  758 (860)
                      .++.....++.             ..+..+....    .................+++++..++++...+|...+|  +.
T Consensus        96 ~i~~~~~~~~~-------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~  158 (269)
T d2hqsa1          96 KLAFALSKTGS-------------LNLYVMDLAS----GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI  158 (269)
T ss_dssp             EEEEEECTTSS-------------CEEEEEETTT----CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             eeeEeeecCCc-------------cceeeccccc----ccceeeeeccccccccccccccccceecccccCCceEeeeec
Confidence            86666555544             1122222222    22223333445556677888888767777777765544  55


Q ss_pred             CCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc
Q psy4578         759 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN  838 (860)
Q Consensus       759 ~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s  838 (860)
                      ....  ......+........|+|+|..++.+....|...+|........             . ....+........|+
T Consensus       159 ~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-------------~-~~~~~~~~~~~p~~S  222 (269)
T d2hqsa1         159 NGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-------------V-QVLSSTFLDETPSLA  222 (269)
T ss_dssp             TSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-------------E-EECCCSSSCEEEEEC
T ss_pred             cccc--ceeeecccccccccccccccceeEEEeecCCceeeeEeeccccc-------------c-eEeecCccccceEEC
Confidence            5443  34455566777888999999987777777777777765542211             1 111234556778999


Q ss_pred             cCCCeEEEEEeCCCe
Q psy4578         839 PNEPWVICSVSEDNI  853 (860)
Q Consensus       839 pdg~~Llasgs~Dg~  853 (860)
                      |||++|+.+...++.
T Consensus       223 PDG~~i~f~s~~~~~  237 (269)
T d2hqsa1         223 PNGTMVIYSSSQGMG  237 (269)
T ss_dssp             TTSSEEEEEEEETTE
T ss_pred             CCCCEEEEEEcCCCC
Confidence            999998777655443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.62  E-value=2.6e-07  Score=99.15  Aligned_cols=230  Identities=7%  Similarity=-0.042  Sum_probs=134.0

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEe----------CCCcEEEEEcCCCCcccCeeeccCC-------
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVA----------DDQKLMIWDTRSHNVSKPSHTVDAH-------  666 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs----------~DG~I~IWd~~~~~~~~~~~~~~~h-------  666 (860)
                      ++.++....++....... ....+.|+| +++.+++++          .|+.|++||..+++.   ...+..+       
T Consensus        48 ~~~~d~~~~~~~~~~~~~-~~~~~a~sp-Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~---~~~i~~p~~~~~~~  122 (368)
T d1mdah_          48 NWVSCAGCGVTLGHSLGA-FLSLAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---IADIELPDAPRFSV  122 (368)
T ss_dssp             EEEEETTTTEEEEEEEEC-TTCEEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---EEEEEETTSCSCCB
T ss_pred             EEEEeCCCCcEEEEEeCC-CCCcceECC-CCCEEEEEcccCccccccccCCeEEEEECCCCcE---eeeecCCccceecc
Confidence            444455555554444332 234689999 565555433          467899999988543   3332211       


Q ss_pred             CCCeeEEEEccCCCeEEEEEeCCCceeeeccccc------------------------ccCCCcEEEEeCCCCCCCCCe-
Q psy4578         667 TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE------------------------ENYDQKLMIWDTRSHNVSKPS-  721 (860)
Q Consensus       667 ~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~------------------------~~~dg~I~iwDl~~~~~~~~~-  721 (860)
                      ......++|+|||++++++...++.+.+|+....                        ...||.+.+|+.......... 
T Consensus       123 g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~  202 (368)
T d1mdah_         123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV  202 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred             cCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeee
Confidence            1223568999999987666667888777765443                        134677777776654221110 


Q ss_pred             --eeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeE-EeccC----------CCceEEEEEcCCCCCEE
Q psy4578         722 --HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH-SFESH----------KDEIFQVQWSPHNETIL  788 (860)
Q Consensus       722 --~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~-~~~~h----------~~~V~~l~fsp~g~~lL  788 (860)
                        .....+...+....+++++.. +.  ..++.+.+++......... ....+          ......+++++++..++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~g~~-~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~  279 (368)
T d1mdah_         203 GAQCTGAQNCSSQAAQANYPGML-VW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM  279 (368)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEE-EE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             ecccccccccceeecccccCcEE-EE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEE
Confidence              112234445556777777652 33  3345666777665443111 01111          11223477888888655


Q ss_pred             EEEECC--------CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCe-EEEEEeCCCeEee
Q psy4578         789 ASSGTD--------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-VICSVSEDNIMQK  856 (860)
Q Consensus       789 ~tgs~D--------g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~-Llasgs~Dg~IrI  856 (860)
                      ++...+        ..|.+||..+++....+               .+...+.+++|+|||+. ++++++.|+.|+|
T Consensus       280 v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~---------------~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v  341 (368)
T d1mdah_         280 ILTVEHSRSCLAAAENTSSVTASVGQTSGPI---------------SNGHDSDAIIAAQDGASDNYANSAGTEVLDI  341 (368)
T ss_dssp             EEEEECSSCTTSCEEEEEEEESSSCCEEECC---------------EEEEEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred             EEecCCCceeecCCceEEEEECCCCcEeEEe---------------cCCCceeEEEECCCCCEEEEEEeCCCCeEEE
Confidence            444322        35889999885543222               13456889999999974 6788888998875

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.58  E-value=3e-07  Score=100.70  Aligned_cols=202  Identities=8%  Similarity=0.017  Sum_probs=121.6

Q ss_pred             EEEEEeCCCcEEEEEcCCCCcccCeeec---------------------------cCCCCCeeEEEEccCCCeEEEEEeC
Q psy4578         636 LFGSVADDQKLMIWDTRSHNVSKPSHTV---------------------------DAHTAEVNCLSFNPYSEYILATGSA  688 (860)
Q Consensus       636 ~lasgs~DG~I~IWd~~~~~~~~~~~~~---------------------------~~h~~~V~~l~~sp~g~~llasgs~  688 (860)
                      .|+||+.+|.|++|++.+++..+.+-.+                           ..|..........|||++++++...
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            3778889999999999775322211111                           1122334555567899987777777


Q ss_pred             CCceeeecccccccCCCcEEEEeCCCCCCCCCeeee-cCCCCCeEEEEEcCCCCcEEEEeeCCCcE--------------
Q psy4578         689 DKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSEYILATGSADKTV--------------  753 (860)
Q Consensus       689 Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~-~~h~~~I~sl~~sp~g~~llasgs~Dg~I--------------  753 (860)
                      ++.               |.++|+.+.+   ....+ ..+...+..++|+|+|+..++++.....+              
T Consensus        93 ~~r---------------VavIDl~t~k---~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~  154 (441)
T d1qnia2          93 NTR---------------VARIRLDIMK---TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS  154 (441)
T ss_dssp             TTE---------------EEEEETTTTE---EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred             CCE---------------EEEEECCCCc---EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence            776               9999999863   22222 23567899999999998655554433333              


Q ss_pred             ----EEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccc-------------------
Q psy4578         754 ----ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS-------------------  810 (860)
Q Consensus       754 ----~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~-------------------  810 (860)
                          ..+|..+... ..+... .+....++|+|+|+++++++.....+..++..+......                   
T Consensus       155 ~~~~~~iD~~t~~v-~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~  232 (441)
T d1qnia2         155 YTMFTAIDAETMDV-AWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK  232 (441)
T ss_dssp             EEEEEEEETTTCSE-EEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB
T ss_pred             cceEEeecCcccee-eEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEE
Confidence                4577777665 333332 245678999999998655554333222222211111000                   


Q ss_pred             -ccc------ccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee-cc
Q psy4578         811 -TED------AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK-PF  858 (860)
Q Consensus       811 -~~~------~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI-~f  858 (860)
                       ...      ........+...... .....++++|||+++++++..+++|.| ++
T Consensus       233 ~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~  287 (441)
T d1qnia2         233 TIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAI  287 (441)
T ss_dssp             CCTTCCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred             EeCCCCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence             000      000111233333332 235679999999999999999999986 44

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.56  E-value=9.5e-07  Score=95.11  Aligned_cols=167  Identities=12%  Similarity=0.169  Sum_probs=105.5

Q ss_pred             CCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeee--cCCCCCeEEEEEcCCCCcEE
Q psy4578         667 TAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTV--DAHTAEVNCLSFNPYSEYIL  744 (860)
Q Consensus       667 ~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~--~~h~~~I~sl~~sp~g~~ll  744 (860)
                      ...+.++.|+|+|++++++......               |.+|+.............  .......+.++|+|++++++
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~---------------v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~y  208 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANK---------------LWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLY  208 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTE---------------EEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCE---------------EEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEE
Confidence            3457899999999987666544444               777765543211111111  12345788999999999877


Q ss_pred             EEeeCCCcEEEEeCCCCcee-eE---Eec--------------cCCCceEEEEEcCCCCCEEEEEECCC-----cEEEEE
Q psy4578         745 ATGSADKTVALWDLRNLKLK-LH---SFE--------------SHKDEIFQVQWSPHNETILASSGTDR-----RLHVWD  801 (860)
Q Consensus       745 asgs~Dg~I~IWDl~~~~~~-~~---~~~--------------~h~~~V~~l~fsp~g~~lL~tgs~Dg-----~I~iWd  801 (860)
                      +++..+++|.+||....... ..   ...              .+......+.++|+|++++++...+.     .|..|+
T Consensus       209 v~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~  288 (365)
T d1jofa_         209 ALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFK  288 (365)
T ss_dssp             EEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEE
T ss_pred             EeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEE
Confidence            88888999999998765431 11   110              11224567899999998665554333     377777


Q ss_pred             CCCCCcccccccccCCCCccEEEecCccCceEEEEEcc-CCCeEEEEEeCCCeEee
Q psy4578         802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWVICSVSEDNIMQK  856 (860)
Q Consensus       802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~sp-dg~~Llasgs~Dg~IrI  856 (860)
                      +.........        ..+...........+++++| +|++|++++..++.|.|
T Consensus       289 ~~~~g~~~~~--------~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v  336 (365)
T d1jofa_         289 LRDCGSIEKQ--------LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             ECTTSCEEEE--------EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             ecCCCceeeE--------eEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEE
Confidence            6653221110        11111122334567799998 89999999889998876

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.56  E-value=3.9e-07  Score=96.10  Aligned_cols=165  Identities=10%  Similarity=0.015  Sum_probs=94.7

Q ss_pred             eeeEeeccCCcEEEEE----eCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         625 IDVAWHLLHESLFGSV----ADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       625 ~~v~~sp~~~~~lasg----s~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      .-.+.+|++..++++.    ..++.|.+||..++   +.+.++..+  ....++|+|||+++++++.....      ...
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg---~~~~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~------~~~   73 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVIGMIDGG--FLPNPVVADDGSFIAHASTVFSR------IAR   73 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEEEEEEEC--SSCEEEECTTSSCEEEEEEEEEE------TTE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCC---cEEEEEECC--CCCceEEcCCCCEEEEEeCCCcc------ccc
Confidence            3345677444444443    24567999999885   445555443  34479999999986555432111      001


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCC-------CCCeEEEEEcCCCCcEEEEe-eCCCcEEEEeCCCCceeeEEeccCC
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAH-------TAEVNCLSFNPYSEYILATG-SADKTVALWDLRNLKLKLHSFESHK  772 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h-------~~~I~sl~~sp~g~~llasg-s~Dg~I~IWDl~~~~~~~~~~~~h~  772 (860)
                      +..++.|++||..+++   .+..+..+       ......++|+|++.++++.. +.+..+.+||..++.. +..+..+.
T Consensus        74 g~~d~~v~v~D~~t~~---~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~  149 (355)
T d2bbkh_          74 GERTDYVEVFDPVTLL---PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPD  149 (355)
T ss_dssp             EEEEEEEEEECTTTCC---EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS
T ss_pred             cCCCCEEEEEECCCCC---EEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE-eeEEecCC
Confidence            1223459999999873   33333222       12345689999999744332 4567899999998876 44444332


Q ss_pred             C-------ceEEEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         773 D-------EIFQVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       773 ~-------~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      .       ....+.++++|..+++....++.+.+++...
T Consensus       150 ~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~  188 (355)
T d2bbkh_         150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  188 (355)
T ss_dssp             EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             cceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc
Confidence            1       2233555666655444444455555555444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.55  E-value=2.2e-07  Score=103.27  Aligned_cols=161  Identities=16%  Similarity=0.197  Sum_probs=106.9

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe--eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS--HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~--~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      -..+.|.+ ++.++.  ..||.+.+||+.+++....+  ..+..|...|.++.|||||++++ .++....  +|+.    
T Consensus        19 ~~~~~W~~-d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~-~~~~~~~--~~r~----   88 (470)
T d2bgra1          19 LYSLRWIS-DHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFIL-LEYNYVK--QWRH----   88 (470)
T ss_dssp             CCCCEECS-SSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEE-EEEEEEE--CSSS----
T ss_pred             ccCCEeCC-CCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEE-EEECCcc--eeee----
Confidence            34688997 666654  45788999999987542211  24456678899999999999854 4433221  1111    


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc-----------
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES-----------  770 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~-----------  770 (860)
                      ..++.+.+||+.+++    +..+..|...+..+.|||+|+. +|.. .++.+++|+..++.. ......           
T Consensus        89 s~~~~~~l~d~~~~~----~~~l~~~~~~~~~~~~SPDG~~-ia~~-~~~~l~~~~~~~g~~-~~~t~~~~~~~~~~g~~  161 (470)
T d2bgra1          89 SYTASYDIYDLNKRQ----LITEERIPNNTQWVTWSPVGHK-LAYV-WNNDIYVKIEPNLPS-YRITWTGKEDIIYNGIT  161 (470)
T ss_dssp             CEEEEEEEEETTTTE----ECCSSCCCTTEEEEEECSSTTC-EEEE-ETTEEEEESSTTSCC-EECCSCCBTTTEEESBC
T ss_pred             ccCceEEEEECCCCc----ccccccCCccccccccccCcce-eeEe-ecccceEEECCCCce-eeeeeccCCCccccccc
Confidence            223459999999863    3456678889999999999997 5554 567899999988764 221111           


Q ss_pred             -------CCCceEEEEEcCCCCCEEEEEECC-CcEEEEEC
Q psy4578         771 -------HKDEIFQVQWSPHNETILASSGTD-RRLHVWDL  802 (860)
Q Consensus       771 -------h~~~V~~l~fsp~g~~lL~tgs~D-g~I~iWdl  802 (860)
                             ..+....+.|+|||++ |+....| ..+..|++
T Consensus       162 d~~~~~~~~~~~~~~~wSPDGk~-ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         162 DWVYEEEVFSAYSALWWSPNGTF-LAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             CHHHHHHTSSSSBCEEECTTSSE-EEEEEEECTTCCEEEE
T ss_pred             ceeeeeeecCCccccEECCCCCc-cceeEecCCcCceEEE
Confidence                   1233456889999997 5555433 44555544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.44  E-value=4e-07  Score=101.04  Aligned_cols=156  Identities=18%  Similarity=0.248  Sum_probs=104.7

Q ss_pred             eEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCe--eeecCCCCCeEEEEEcCCCCcEEEEee
Q psy4578         671 NCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPS--HTVDAHTAEVNCLSFNPYSEYILATGS  748 (860)
Q Consensus       671 ~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~--~~~~~h~~~I~sl~~sp~g~~llasgs  748 (860)
                      ..+.|.+++.+ +.  ..++.               +.+||+.+++....+  ..+..|...|.++.|||||++ |+.++
T Consensus        20 ~~~~W~~d~~~-~~--~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~-i~~~~   80 (470)
T d2bgra1          20 YSLRWISDHEY-LY--KQENN---------------ILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQF-ILLEY   80 (470)
T ss_dssp             CCCEECSSSEE-EE--ESSSC---------------EEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSE-EEEEE
T ss_pred             cCCEeCCCCEE-EE--EcCCc---------------EEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCE-EEEEE
Confidence            45789998874 33  24555               899999987421111  133456678999999999997 44443


Q ss_pred             ---------CCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCC
Q psy4578         749 ---------ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP  819 (860)
Q Consensus       749 ---------~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~  819 (860)
                               .++.+.+||+.++..  ..+..+...+..+.|||||+. ++.. .++.+++|+..++...+......   .
T Consensus        81 ~~~~~~r~s~~~~~~l~d~~~~~~--~~l~~~~~~~~~~~~SPDG~~-ia~~-~~~~l~~~~~~~g~~~~~t~~~~---~  153 (470)
T d2bgra1          81 NYVKQWRHSYTASYDIYDLNKRQL--ITEERIPNNTQWVTWSPVGHK-LAYV-WNNDIYVKIEPNLPSYRITWTGK---E  153 (470)
T ss_dssp             EEEECSSSCEEEEEEEEETTTTEE--CCSSCCCTTEEEEEECSSTTC-EEEE-ETTEEEEESSTTSCCEECCSCCB---T
T ss_pred             CCcceeeeccCceEEEEECCCCcc--cccccCCccccccccccCcce-eeEe-ecccceEEECCCCceeeeeeccC---C
Confidence                     357889999998874  557788899999999999997 5554 57899999998876543332111   1


Q ss_pred             ccEEEec-------CccCceEEEEEccCCCeEEEEEeCCC
Q psy4578         820 ELLFIHG-------GHTAKISDFSWNPNEPWVICSVSEDN  852 (860)
Q Consensus       820 ~~i~~~~-------~h~~~I~~i~~spdg~~Llasgs~Dg  852 (860)
                      .......       ...+....+.|||||++++....++.
T Consensus       154 ~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~  193 (470)
T d2bgra1         154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT  193 (470)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred             CcccccccceeeeeeecCCccccEECCCCCccceeEecCC
Confidence            1111100       12344567889999998665554444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.39  E-value=1.9e-06  Score=94.11  Aligned_cols=220  Identities=9%  Similarity=0.005  Sum_probs=127.7

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeec-cCCCCCeeEEEEccCCCeEEEEEeCCCceee-eccc-
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSEYILATGSADKTQFE-VEEE-  698 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~-~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~-~~~~-  698 (860)
                      .........|++..++++...+++|.++|+.+.+.   ...+ ..+...+..++|+|+|+..++++..+..+.+ .+.. 
T Consensus        72 P~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~---~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          72 PHISMTDGRYDGKYLFINDKANTRVARIRLDIMKT---DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             CEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE---EEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             CCcceecccCCCCEEEEEcCCCCEEEEEECCCCcE---eeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            33445556774444456666888999999998533   2222 2356789999999999865444433332211 1000 


Q ss_pred             -ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeC----------------------------
Q psy4578         699 -EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA----------------------------  749 (860)
Q Consensus       699 -~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~----------------------------  749 (860)
                       ........+..+|..+.   .....+.. .+....++++|+|+++++++..                            
T Consensus       149 ~~~~~~~~~~~~iD~~t~---~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~  224 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETM---DVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA  224 (441)
T ss_dssp             CCGGGEEEEEEEEETTTC---SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred             cccccccceEEeecCccc---eeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence             00111234566777765   33333332 2456789999999975555422                            


Q ss_pred             ------------CCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCC
Q psy4578         750 ------------DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDG  817 (860)
Q Consensus       750 ------------Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~  817 (860)
                                  ++.+.+++...... +....... ....+.++|||+++++++..+++|.+||+.+.....  ... ..
T Consensus       225 ~~~dGk~~~v~~~~v~vvd~~~~~~v-~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~--~~~-~~  299 (441)
T d1qnia2         225 AVKAGNFKTIGDSKVPVVDGRGESEF-TRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLF--EDK-IE  299 (441)
T ss_dssp             HHHTTCCBCCTTCCCCEEECSSSCSS-EEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHT--TTS-SC
T ss_pred             EecCCCEEEeCCCCcEEEEcccCCce-EEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHh--hcc-CC
Confidence                        23444444444333 44454433 356799999999988888899999999998643211  110 11


Q ss_pred             CCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeE
Q psy4578         818 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM  854 (860)
Q Consensus       818 ~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~I  854 (860)
                      ....+.......-.....+|+++|. .+.+..-|..|
T Consensus       300 ~~~~~~~~~~~glgplh~~fd~~g~-~yts~~~ds~v  335 (441)
T d1qnia2         300 LRDTIVAEPELGLGPLHTTFDGRGN-AYTTLFIDSQV  335 (441)
T ss_dssp             GGGGEEECCBCCSCEEEEEECSSSE-EEEEETTTTEE
T ss_pred             cceEEEeecccccCcccceecCCce-EEEcccccceE
Confidence            1222222222233456678999986 67777777555

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.35  E-value=6.7e-06  Score=88.24  Aligned_cols=224  Identities=8%  Similarity=-0.003  Sum_probs=121.8

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeC--CCceeeeccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSA--DKTQFEVEEE  698 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~--Dg~i~~~~~~  698 (860)
                      ...+..++|+| +++.+.++.. +.+..|.+........... .........+.++++++.++++...  .+++..+...
T Consensus        39 ~~~~s~la~s~-d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~-~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          39 DEPISWMTFDH-ERKNIYGAAM-KKWSSFAVKSPTEIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TCCCSEEEECT-TSSEEEEEEB-TEEEEEEEEETTEEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCEEEEcC-CCCEEEEEeC-CcEEEEEEeCCCCeEEEee-ecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence            34567799998 5666665554 5788887764321111111 1123446678889998865444432  3342222111


Q ss_pred             ccccCCCcEEEEeCCCCCCC-CCeee-ecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee--eEE--eccCC
Q psy4578         699 EEENYDQKLMIWDTRSHNVS-KPSHT-VDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK--LHS--FESHK  772 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~-~~~~~-~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~--~~~--~~~h~  772 (860)
                      ..   .+...++.+...... ..... .......+.++.|+|+|++++++......|.+|+.......  ...  .....
T Consensus       116 ~~---~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T d1jofa_         116 KF---AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             SS---CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             CC---CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCC
Confidence            11   112233333221000 00111 11123347899999999986666655678999876543321  111  12245


Q ss_pred             CceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCccccccc-----ccCCCCccEEEecCccCceEEEEEccCCCeEEEE
Q psy4578         773 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED-----AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS  847 (860)
Q Consensus       773 ~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~-----~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llas  847 (860)
                      ...+.++|+|+|+++.+++..+++|.+|++...........     ..............+......+.++|||++++++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            67899999999998777777889999999876433211100     0000000000011233346678999999998877


Q ss_pred             EeC
Q psy4578         848 VSE  850 (860)
Q Consensus       848 gs~  850 (860)
                      ...
T Consensus       273 nr~  275 (365)
T d1jofa_         273 SRA  275 (365)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.32  E-value=1.9e-06  Score=92.18  Aligned_cols=205  Identities=6%  Similarity=-0.066  Sum_probs=113.1

Q ss_pred             eeEEEEeeccchhhhhhhhh--------cccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC----
Q psy4578         600 IEEVMYLENKTRAQICQLLD--------KLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT----  667 (860)
Q Consensus       600 l~~il~l~n~~~~~l~~l~~--------~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~----  667 (860)
                      ....+.+|+....+......        .......++|+|++..++++...++.+.+||+.+++.   ...+..+.    
T Consensus        94 ~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~  170 (368)
T d1mdah_          94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHI  170 (368)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCC
T ss_pred             cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE---eEEeeccCcceE
Confidence            34456666665555433321        1123457899995444444545789999999988532   33332222    


Q ss_pred             ---CCeeEEEEccCCCeEEEEEeCCCceeeeccccc---------------------ccCCCcEEEEeCCCCCCCCCeee
Q psy4578         668 ---AEVNCLSFNPYSEYILATGSADKTQFEVEEEEE---------------------ENYDQKLMIWDTRSHNVSKPSHT  723 (860)
Q Consensus       668 ---~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~---------------------~~~dg~I~iwDl~~~~~~~~~~~  723 (860)
                         +....+.++++|..+ .....++....+.....                     ....+.+.+++...... .....
T Consensus       171 ~~~~~~~~v~~~~Dg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~~~~~  248 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLA-ASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGA-TMKAA  248 (368)
T ss_dssp             EEEETTEEECCCCTTSCE-EEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCC-EEECC
T ss_pred             ccCCCceEEEEcCCCCEE-EEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCce-EEEee
Confidence               222345556666532 22222222111110000                     12234556666554321 11111


Q ss_pred             ecC----------CCCCeEEEEEcCCCCcEEEEeeCC--------CcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCC
Q psy4578         724 VDA----------HTAEVNCLSFNPYSEYILATGSAD--------KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE  785 (860)
Q Consensus       724 ~~~----------h~~~I~sl~~sp~g~~llasgs~D--------g~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~  785 (860)
                      ...          .......++++|++..++++...+        +.|.+||..+++. +..+. +...+.+++|+|||+
T Consensus       249 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~-~~~~~-~~~~~~~~a~spDG~  326 (368)
T d1mdah_         249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPIS-NGHDSDAIIAAQDGA  326 (368)
T ss_dssp             CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE-EECCE-EEEEECEEEECCSSS
T ss_pred             cccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE-eEEec-CCCceeEEEECCCCC
Confidence            111          112234578899888655443322        3588999999876 54444 345788999999997


Q ss_pred             C-EEEEEECCCcEEEEECCCCCccccc
Q psy4578         786 T-ILASSGTDRRLHVWDLSKIGEEQST  811 (860)
Q Consensus       786 ~-lL~tgs~Dg~I~iWdl~~~~~~~~~  811 (860)
                      . +++++..|+.|++||..+++....+
T Consensus       327 ~~ly~s~~~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         327 SDNYANSAGTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             CEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred             EEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence            5 4567778999999999987665444

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=2.9e-05  Score=78.17  Aligned_cols=201  Identities=8%  Similarity=-0.011  Sum_probs=124.9

Q ss_pred             EeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEE
Q psy4578         605 YLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILA  684 (860)
Q Consensus       605 ~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~lla  684 (860)
                      +..+...........+.+......|+|++..++.....+|...++......  .................+++++..++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (269)
T d2hqsa1          66 VIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS--GQIRQVTDGRSNNTEPTWFPDSQNLAF  143 (269)
T ss_dssp             EEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEECCCCSSCEEEEEECTTSSEEEE
T ss_pred             eeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccccc--ccceeeeecccccccccccccccccee
Confidence            334444455555666677888999999555555555556655555544321  222333344555566778888887777


Q ss_pred             EEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee
Q psy4578         685 TGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK  764 (860)
Q Consensus       685 sgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~  764 (860)
                      +...+|.             ..|...++...    .......+........|+|++..++.+....|...+|....... 
T Consensus       144 ~~~~~g~-------------~~i~~~~~~~~----~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~-  205 (269)
T d2hqsa1         144 TSDQAGR-------------PQVYKVNINGG----APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-  205 (269)
T ss_dssp             EECTTSS-------------CEEEEEETTSS----CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC-
T ss_pred             cccccCC-------------ceEeeeecccc----cceeeecccccccccccccccceeEEEeecCCceeeeEeecccc-
Confidence            7766664             22555566554    22233345667778899999998676666667766665544433 


Q ss_pred             eEEeccCCCceEEEEEcCCCCCEEEEEECC--CcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccC
Q psy4578         765 LHSFESHKDEIFQVQWSPHNETILASSGTD--RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN  840 (860)
Q Consensus       765 ~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D--g~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spd  840 (860)
                      ......+........|+|||+.|++++...  +.|+++++....               ...+....+.+...+|||-
T Consensus       206 ~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~---------------~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         206 GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF---------------KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC---------------EEECCCSSSEEEEEEECCC
T ss_pred             cceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC---------------EEEEeCCCCcEEeEEeCCC
Confidence            223344566678889999999876666543  467888887632               2233344567888899983

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.28  E-value=4e-05  Score=77.61  Aligned_cols=195  Identities=4%  Similarity=-0.002  Sum_probs=120.8

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEE  698 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~  698 (860)
                      ........+++++ ++.++++....+.+++++-.+.   ..+... .......++++.++++ ++++......       
T Consensus        54 ~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~---~~~~~~-~~~~~p~~iavd~~g~-i~v~d~~~~~-------  120 (260)
T d1rwia_          54 NGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNN---QTVLPF-DGLNYPEGLAVDTQGA-VYVADRGNNR-------  120 (260)
T ss_dssp             CSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSC---CEECCC-CSCCSEEEEEECTTCC-EEEEEGGGTE-------
T ss_pred             CCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccc---eeeeee-eeeeecccccccccce-eEeecccccc-------
Confidence            3344567889997 6777777766666666654432   222222 2235678999999887 4555444443       


Q ss_pred             ccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEE
Q psy4578         699 EEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV  778 (860)
Q Consensus       699 ~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l  778 (860)
                              +..++.....  ...... .......+++++|+|. ++++...++.|..+|...... .......-.....+
T Consensus       121 --------~~~~~~~~~~--~~~~~~-~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~gi  187 (260)
T d1rwia_         121 --------VVKLAAGSKT--QTVLPF-TGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGI  187 (260)
T ss_dssp             --------EEEECTTCSS--CEECCC-CSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEE
T ss_pred             --------ccccccccce--eeeeee-cccCCcceeeecCCCC-Eeeecccccccccccccccee-eeeeccccCCCccc
Confidence                    5555554321  111111 1223457899999988 677778888999999887654 22222345667899


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         779 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      ++.++|. ++++....+.|..++.......              ......-....+|+++++|. |+++...++.|+
T Consensus       188 ~~d~~g~-l~vsd~~~~~i~~~~~~~~~~~--------------~~~~~~~~~P~~i~~d~~g~-l~vad~~~~rI~  248 (260)
T d1rwia_         188 AVDEAGT-VYVTEHNTNQVVKLLAGSTTST--------------VLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVV  248 (260)
T ss_dssp             EECTTCC-EEEEETTTTEEEEECTTCSCCE--------------ECCCCSCCCEEEEEECTTCC-EEEEEGGGTEEE
T ss_pred             eeeeeee-eeeeecCCCEEEEEeCCCCeEE--------------EEccCCCCCeEEEEEeCCCC-EEEEECCCCEEE
Confidence            9999986 5767777788888876542110              00111224568999999998 566666555554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.24  E-value=2.3e-05  Score=81.35  Aligned_cols=195  Identities=11%  Similarity=0.091  Sum_probs=124.9

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccC
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENY  703 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~  703 (860)
                      +..+++.| +++++++...+++|..|+....     ...+......+.+++|+++|+ +++++..++.            
T Consensus        30 ~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~-----~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~------------   90 (302)
T d2p4oa1          30 LENLASAP-DGTIFVTNHEVGEIVSITPDGN-----QQIHATVEGKVSGLAFTSNGD-LVATGWNADS------------   90 (302)
T ss_dssp             EEEEEECT-TSCEEEEETTTTEEEEECTTCC-----EEEEEECSSEEEEEEECTTSC-EEEEEECTTS------------
T ss_pred             cCCEEECC-CCCEEEEeCCCCEEEEEeCCCC-----EEEEEcCCCCcceEEEcCCCC-eEEEecCCce------------
Confidence            55789998 7889999999999988886532     223344567899999999998 6777777666            


Q ss_pred             CCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEecc---------CCCc
Q psy4578         704 DQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFES---------HKDE  774 (860)
Q Consensus       704 dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~---------h~~~  774 (860)
                         +..|+......................+++.+++. ++++.+.++.+..+|..+....+.....         ....
T Consensus        91 ---~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (302)
T d2p4oa1          91 ---IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  166 (302)
T ss_dssp             ---CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             ---EEEEEecccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccc
Confidence               66666544321111111122345678999999997 5778788899999998876543222211         1234


Q ss_pred             eEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe-CCCe
Q psy4578         775 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS-EDNI  853 (860)
Q Consensus       775 V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs-~Dg~  853 (860)
                      ...+.++  +..++++.+..+.|..++..........        . ..   .......+++++++|.. +++.. .+.+
T Consensus       167 ~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~--------~-~~---~~~~~pdgia~d~dG~l-~va~~~~~~V  231 (302)
T d2p4oa1         167 ANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEP--------E-IF---VEQTNIDDFAFDVEGNL-YGATHIYNSV  231 (302)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCC--------E-EE---EESCCCSSEEEBTTCCE-EEECBTTCCE
T ss_pred             ccccccc--CCceeeecCCCCeEEecccccccccccc--------c-cc---cCCCCCcceEECCCCCE-EEEEcCCCcE
Confidence            5666665  4456778888899999988764322111        1 11   11234567899999984 44444 4445


Q ss_pred             Eee
Q psy4578         854 MQK  856 (860)
Q Consensus       854 IrI  856 (860)
                      ++|
T Consensus       232 ~~i  234 (302)
T d2p4oa1         232 VRI  234 (302)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            555

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.10  E-value=0.00017  Score=75.27  Aligned_cols=209  Identities=10%  Similarity=0.077  Sum_probs=121.7

Q ss_pred             eeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCC-CCCeeEEEEccCCCeEEEEEeCCCceeeecccc-cc
Q psy4578         624 LIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAH-TAEVNCLSFNPYSEYILATGSADKTQFEVEEEE-EE  701 (860)
Q Consensus       624 V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h-~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~-~~  701 (860)
                      -..+.|.+ +++.++++...+.|..++..............+. -...+.+++.++|. +.++... +....+.... ..
T Consensus        73 P~Gl~~~~-dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~-~~~~~~~~~~~~~  149 (314)
T d1pjxa_          73 PAGCQCDR-DANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPA-GEVAPADYTRSMQ  149 (314)
T ss_dssp             EEEEEECS-SSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECB-CBCTTSCCCBTTS
T ss_pred             ceeEEEeC-CCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCc-cCcccccccceec
Confidence            56799998 5666666666667888887653211001111111 12357899999997 4555322 2111111111 11


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCC----cEEEEeeCCCcEEEEeCCCCcee-----eEEecc-C
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSE----YILATGSADKTVALWDLRNLKLK-----LHSFES-H  771 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~----~llasgs~Dg~I~IWDl~~~~~~-----~~~~~~-h  771 (860)
                      ...|.|..++...    . ...+...-..-+.++|+|++.    .++++-+..+.|..||+......     ...+.+ +
T Consensus       150 ~~~G~v~~~~~dg----~-~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~  224 (314)
T d1pjxa_         150 EKFGSIYCFTTDG----Q-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             SSCEEEEEECTTS----C-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             cCCceEEEEeecC----c-eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccc
Confidence            2234455554432    1 112222233457899998764    45667778899999987644321     111221 2


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCC
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED  851 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~D  851 (860)
                      ......+++..+|+ ++++....+.|.+||......              ...........++++|.|+++.|+++.+.+
T Consensus       225 ~~~pdGiavD~~Gn-lyVa~~~~g~I~~~dp~~g~~--------------~~~i~~p~~~~t~~afg~d~~~lyVt~~~~  289 (314)
T d1pjxa_         225 EGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQP--------------KMRIRCPFEKPSNLHFKPQTKTIFVTEHEN  289 (314)
T ss_dssp             SCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSC--------------SEEEECSSSCEEEEEECTTSSEEEEEETTT
T ss_pred             cccceeeEEecCCc-EEEEEcCCCEEEEEeCCCCEE--------------EEEEECCCCCEEEEEEeCCCCEEEEEECCC
Confidence            23457899999997 566777789999999775332              122222345688999999998888888887


Q ss_pred             CeEe
Q psy4578         852 NIMQ  855 (860)
Q Consensus       852 g~Ir  855 (860)
                      +.|.
T Consensus       290 g~i~  293 (314)
T d1pjxa_         290 NAVW  293 (314)
T ss_dssp             TEEE
T ss_pred             CcEE
Confidence            7654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.99  E-value=0.00045  Score=71.92  Aligned_cols=202  Identities=8%  Similarity=0.021  Sum_probs=116.1

Q ss_pred             eeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCC
Q psy4578         625 IDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYD  704 (860)
Q Consensus       625 ~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~d  704 (860)
                      -.++|.+ +++++++-..+|.|..|+..++.   ..............++++++|+ ++++...+..           ..
T Consensus        43 EG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~---~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~-----------~~  106 (319)
T d2dg1a1          43 EGLNFDR-QGQLFLLDVFEGNIFKINPETKE---IKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFK-----------ST  106 (319)
T ss_dssp             EEEEECT-TSCEEEEETTTCEEEEECTTTCC---EEEEEECSSSSEEEEEECTTSC-EEEEECTTSS-----------SC
T ss_pred             EeCEECC-CCCEEEEECCCCEEEEEECCCCe---EEEEEeCCCCCeeEEEECCCCC-EEEEecCCCc-----------cc
Confidence            4788997 67788877788999999887642   2233334456788999999997 4555433211           11


Q ss_pred             CcEEEEeCCCCCCCCCeeeec--CCCCCeEEEEEcCCCCcEEEEeeC------CCcEEEEeCCCCceeeEEeccCCCceE
Q psy4578         705 QKLMIWDTRSHNVSKPSHTVD--AHTAEVNCLSFNPYSEYILATGSA------DKTVALWDLRNLKLKLHSFESHKDEIF  776 (860)
Q Consensus       705 g~I~iwDl~~~~~~~~~~~~~--~h~~~I~sl~~sp~g~~llasgs~------Dg~I~IWDl~~~~~~~~~~~~h~~~V~  776 (860)
                      +.+...+.....   ......  .-....+.+++.++|. +.++...      .+.+..++.....  +......-...+
T Consensus       107 ~~i~~~~~~~~~---~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~--~~~~~~~~~~pn  180 (319)
T d2dg1a1         107 GGIFAATENGDN---LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVAN  180 (319)
T ss_dssp             CEEEEECTTSCS---CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEE
T ss_pred             eeEEEEcCCCce---eeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce--eEEEeeccceee
Confidence            124444444331   111111  1123467899999998 4555322      2335555554433  222222334568


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      .++|+|+++.++++-+..+.|..|++..........      ................++++.+|+ |.++...++.|.
T Consensus       181 Gia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~------~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~  252 (319)
T d2dg1a1         181 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF------GATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVL  252 (319)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE------EEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEE
T ss_pred             eeeeccccceEEEecccCCceEEEEEcCCCceeccc------cceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEE
Confidence            899999998767777788999999987532211100      000111111122356789999998 555555555543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.92  E-value=0.00027  Score=71.23  Aligned_cols=191  Identities=7%  Similarity=0.028  Sum_probs=115.1

Q ss_pred             ceeeeEeeccCCcEEEE-EeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccc
Q psy4578         623 LLIDVAWHLLHESLFGS-VADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEE  701 (860)
Q Consensus       623 ~V~~v~~sp~~~~~las-gs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~  701 (860)
                      .-.++++.+ +++++++ .+..+.+..++.....  .......+ ......++++++|. ++++....+.          
T Consensus        15 ~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~--~~~~~~~~-~~~p~gvav~~~g~-i~v~d~~~~~----------   79 (260)
T d1rwia_          15 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTG--TTVLPFNG-LYQPQGLAVDGAGT-VYVTDFNNRV----------   79 (260)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEEC----C--EEECCCCS-CCSCCCEEECTTCC-EEEEETTTEE----------
T ss_pred             CCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCce--EEEeccCC-ccCceEEEEcCCCC-EEEeeeeece----------
Confidence            457899998 5666554 4455777777665421  11222222 23457889999887 5666555444          


Q ss_pred             cCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEc
Q psy4578         702 NYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS  781 (860)
Q Consensus       702 ~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fs  781 (860)
                           +++++-.+.   ..+.... ......++++.+++. ++++-..+..+..++............ ......+++++
T Consensus        80 -----i~~~~~~~~---~~~~~~~-~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~~  148 (260)
T d1rwia_          80 -----VTLAAGSNN---QTVLPFD-GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVD  148 (260)
T ss_dssp             -----EEECTTCSC---CEECCCC-SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCC-SCCSCCEEEEC
T ss_pred             -----eeeeeeccc---eeeeeee-eeeecccccccccce-eEeeccccccccccccccceeeeeeec-ccCCcceeeec
Confidence                 555544332   2222222 235678999999988 566666667788888766553222222 23455789999


Q ss_pred             CCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         782 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       782 p~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      ++|+ ++++...++.|..+|.......              ............++++++|. |+++....+.|.
T Consensus       149 ~~g~-~~v~~~~~~~i~~~d~~~~~~~--------------~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~  206 (260)
T d1rwia_         149 NSGN-VYVTDTDNNRVVKLEAESNNQV--------------VLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVV  206 (260)
T ss_dssp             TTCC-EEEEEGGGTEEEEECTTTCCEE--------------ECCCSSCCSEEEEEECTTCC-EEEEETTTTEEE
T ss_pred             CCCC-Eeeeccccccccccccccceee--------------eeeccccCCCccceeeeeee-eeeeecCCCEEE
Confidence            9997 5777778889999987753221              11112334567899999987 677776666543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.88  E-value=0.00024  Score=73.30  Aligned_cols=209  Identities=5%  Similarity=-0.013  Sum_probs=122.5

Q ss_pred             hhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         615 CQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       615 ~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      .......+.+.+++|.+ +++++++...++.+..|+......................+++.++++ ++++.+.++.++.
T Consensus        61 ~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~  138 (302)
T d2p4oa1          61 QIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWL  138 (302)
T ss_dssp             EEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEE
T ss_pred             EEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC-EEeecccccccee
Confidence            33445557799999998 678888888888998888765321111111122345688999999887 5777666666332


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee-eEEeccCCC
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-LHSFESHKD  773 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~-~~~~~~h~~  773 (860)
                      ++...     +...+|-....   ...............+.++  +.+++++.+..+.|..++....... .........
T Consensus       139 ~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  208 (302)
T d2p4oa1         139 IDVVQ-----PSGSIWLEHPM---LARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT  208 (302)
T ss_dssp             EETTT-----TEEEEEEECGG---GSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESC
T ss_pred             eeccC-----CcceeEecCCc---cceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccCCC
Confidence            22211     11222221110   0000111222345666665  4456788888999999988765321 111111233


Q ss_pred             ceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEE---ccCCCeEEEEEe
Q psy4578         774 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW---NPNEPWVICSVS  849 (860)
Q Consensus       774 ~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~---spdg~~Llasgs  849 (860)
                      ....++++++|. ++++...++.|..++.....             ..+..........++++|   ++|++.|+++.+
T Consensus       209 ~pdgia~d~dG~-l~va~~~~~~V~~i~p~G~~-------------~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         209 NIDDFAFDVEGN-LYGATHIYNSVVRIAPDRST-------------TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             CCSSEEEBTTCC-EEEECBTTCCEEEECTTCCE-------------EEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCcceEECCCCC-EEEEEcCCCcEEEECCCCCE-------------EEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            456799999997 57777788999998765311             111222223345789999   778887776654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.00014  Score=80.39  Aligned_cols=166  Identities=9%  Similarity=0.165  Sum_probs=100.5

Q ss_pred             eeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCC
Q psy4578         626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQ  705 (860)
Q Consensus       626 ~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg  705 (860)
                      ...|.+ ++.++. -..+|.|.+||+.++.....+.........+....||||++++++......   .|+.    +..+
T Consensus        21 ~~~W~~-~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~---~~r~----s~~~   91 (465)
T d1xfda1          21 EAKWIS-DTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEP---IYQH----SYTG   91 (465)
T ss_dssp             CCCBSS-SSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCC---CSSS----CCCS
T ss_pred             CCEEeC-CCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccc---eeEe----eccc
Confidence            456886 555543 456789999999876432222221223346778899999998665543222   2222    2345


Q ss_pred             cEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCc-----------
Q psy4578         706 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDE-----------  774 (860)
Q Consensus       706 ~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~-----------  774 (860)
                      .+.++|+.++.. ..+.........+....|||+|+.+..+.  ++.|.+.+..++.....+..+..+.           
T Consensus        92 ~~~i~d~~~~~~-~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vye  168 (465)
T d1xfda1          92 YYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE  168 (465)
T ss_dssp             EEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred             cEEEEEccCCce-eeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCCCceEEEecccCcceeeccccchhhh
Confidence            699999998643 22322333345566789999999844443  5678888887665422222222221           


Q ss_pred             ------eEEEEEcCCCCCEEEEEECCCcEEEEECC
Q psy4578         775 ------IFQVQWSPHNETILASSGTDRRLHVWDLS  803 (860)
Q Consensus       775 ------V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~  803 (860)
                            -.++-|||||+++++.--++..+..+.+.
T Consensus       169 ee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~  203 (465)
T d1xfda1         169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP  203 (465)
T ss_dssp             HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred             hhhccccceEEECCCCCeEEEEEecccccceeecc
Confidence                  24678999999855555566667666654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.74  E-value=0.0017  Score=65.83  Aligned_cols=193  Identities=12%  Similarity=0.115  Sum_probs=116.9

Q ss_pred             eeeEeeccCCcEEEEE-eCCCcEEEEEcCCCCcccCeeec-cCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccccc
Q psy4578         625 IDVAWHLLHESLFGSV-ADDQKLMIWDTRSHNVSKPSHTV-DAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEEN  702 (860)
Q Consensus       625 ~~v~~sp~~~~~lasg-s~DG~I~IWd~~~~~~~~~~~~~-~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~  702 (860)
                      ..+.+....+..+++. +.++.|..++...    .....+ .........++..++|. ++++....+.           
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g----~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~-----------  136 (279)
T d1q7fa_          73 NRVAVVRNSGDIIVTERSPTHQIQIYNQYG----QFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMR-----------  136 (279)
T ss_dssp             EEEEEETTTTEEEEEECGGGCEEEEECTTS----CEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTE-----------
T ss_pred             ccccccccccccceeccCCccccccccccc----cceeecCCCcccccceeccccCCc-EEEEeeccce-----------
Confidence            3455554344444433 3445677776542    222222 22345678899998887 4555554454           


Q ss_pred             CCCcEEEEeCCCCCCCCCeeee--cCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEec--cCCCceEEE
Q psy4578         703 YDQKLMIWDTRSHNVSKPSHTV--DAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQV  778 (860)
Q Consensus       703 ~dg~I~iwDl~~~~~~~~~~~~--~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~--~h~~~V~~l  778 (860)
                          +.+++...    ..+..+  ..+......+++.+++. ++++....+.|.+||.....  +..+.  +.......+
T Consensus       137 ----~~~~~~~g----~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~G~~--~~~~g~~g~~~~P~gi  205 (279)
T d1q7fa_         137 ----VIIFDQNG----NVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQY--LRQIGGEGITNYPIGV  205 (279)
T ss_dssp             ----EEEECTTS----CEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCCE--EEEESCTTTSCSEEEE
T ss_pred             ----eeEeccCC----ceeecccccccccccceeeecccee-EEeeeccccceeeeecCCce--eeeecccccccCCccc
Confidence                66665442    222332  34556788899999887 68888888999999976543  44442  345568899


Q ss_pred             EEcCCCCCEEEEEE-CCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee-
Q psy4578         779 QWSPHNETILASSG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK-  856 (860)
Q Consensus       779 ~fsp~g~~lL~tgs-~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI-  856 (860)
                      ++.++|+ ++++-+ .+++|.+|+.. ++....+            ...........+++.++|. ++++. .++.|++ 
T Consensus       206 avD~~G~-i~Vad~~~~~~v~~f~~~-G~~~~~~------------~~~~~~~~p~~vav~~dG~-l~V~~-~n~~v~~f  269 (279)
T d1q7fa_         206 GINSNGE-ILIADNHNNFNLTIFTQD-GQLISAL------------ESKVKHAQCFDVALMDDGS-VVLAS-KDYRLYIY  269 (279)
T ss_dssp             EECTTCC-EEEEECSSSCEEEEECTT-SCEEEEE------------EESSCCSCEEEEEEETTTE-EEEEE-TTTEEEEE
T ss_pred             ccccCCe-EEEEECCCCcEEEEECCC-CCEEEEE------------eCCCCCCCEeEEEEeCCCc-EEEEe-CCCeEEEE
Confidence            9999997 455544 35579998843 2211111            1122234578899999997 56554 5666665 


Q ss_pred             ccCC
Q psy4578         857 PFKK  860 (860)
Q Consensus       857 ~f~k  860 (860)
                      +|++
T Consensus       270 r~~~  273 (279)
T d1q7fa_         270 RYVQ  273 (279)
T ss_dssp             ECSC
T ss_pred             Eeee
Confidence            7653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.68  E-value=0.0047  Score=63.13  Aligned_cols=196  Identities=10%  Similarity=0.012  Sum_probs=119.4

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccC--CCCCeeEEEEccCCCeEEEEEeCCCceeeec
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDA--HTAEVNCLSFNPYSEYILATGSADKTQFEVE  696 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~--h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~  696 (860)
                      .....+.++++.+ ++.++++ +.+ .+.++|..+++.. .+.....  ....++++.+.|+|+. .++......     
T Consensus        56 ~~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~-~l~~~~~~~~~~~~nd~~vd~~G~i-w~~~~~~~~-----  125 (295)
T d2ghsa1          56 ALPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRKA-----  125 (295)
T ss_dssp             ECSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSCE-EEEEEETTC-----
T ss_pred             ECCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceee-EEeeeecCCCcccceeeEECCCCCE-EEEeccccc-----
Confidence            3345678888886 5666554 454 5889999876432 1211111  1235788999999984 443332211     


Q ss_pred             ccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCce-------eeEEec
Q psy4578         697 EEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKL-------KLHSFE  769 (860)
Q Consensus       697 ~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~-------~~~~~~  769 (860)
                            ..+.-.+|.+..++    +..+...-..-+.++|++++..++++-+..+.|..|++.....       ......
T Consensus       126 ------~~~~g~l~~~~~g~----~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~  195 (295)
T d2ghsa1         126 ------ETGAGSIYHVAKGK----VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST  195 (295)
T ss_dssp             ------CTTCEEEEEEETTE----EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT
T ss_pred             ------cccceeEeeecCCc----EEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccC
Confidence                  11224455555442    1122222334578999999998778888889999998753211       112233


Q ss_pred             cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEc-cCCCeEEEEE
Q psy4578         770 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-PNEPWVICSV  848 (860)
Q Consensus       770 ~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~s-pdg~~Llasg  848 (860)
                      +..+....+++..+|. +.++.-..|.|..||... +.              +....--...+++++|- ++.+.|++|.
T Consensus       196 ~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~G-~~--------------~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         196 GIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG-NH--------------IARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             TSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTC-CE--------------EEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             cccccccceEEcCCCC-EEeeeeCCCceEEecCCC-cE--------------eeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            4455688899999996 455555678899999543 22              22222223468999995 7888888886


Q ss_pred             eC
Q psy4578         849 SE  850 (860)
Q Consensus       849 s~  850 (860)
                      +.
T Consensus       260 a~  261 (295)
T d2ghsa1         260 AR  261 (295)
T ss_dssp             BC
T ss_pred             CC
Confidence            64

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.58  E-value=0.0059  Score=62.37  Aligned_cols=198  Identities=12%  Similarity=0.026  Sum_probs=118.4

Q ss_pred             eeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCC
Q psy4578         626 DVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQ  705 (860)
Q Consensus       626 ~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg  705 (860)
                      +..|++.++.++.+=-..+.|.-||..++..    ..+ .....+.++++.++|. +++ ++.+|               
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~----~~~-~~~~~~~~i~~~~dg~-l~v-a~~~g---------------   79 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK----TVH-ALPFMGSALAKISDSK-QLI-ASDDG---------------   79 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE----EEE-ECSSCEEEEEEEETTE-EEE-EETTE---------------
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE----EEE-ECCCCcEEEEEecCCC-EEE-EEeCc---------------
Confidence            4568876677766655778999999887532    222 2345788999999886 343 45565               


Q ss_pred             cEEEEeCCCCCCCCCeeeecC--CCCCeEEEEEcCCCCcEEEEeeC----CCcEEEEeCCCCceeeEEeccCCCceEEEE
Q psy4578         706 KLMIWDTRSHNVSKPSHTVDA--HTAEVNCLSFNPYSEYILATGSA----DKTVALWDLRNLKLKLHSFESHKDEIFQVQ  779 (860)
Q Consensus       706 ~I~iwDl~~~~~~~~~~~~~~--h~~~I~sl~~sp~g~~llasgs~----Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~  779 (860)
                       +..+|..+++. ..+.....  ....++.+.+.|+|.. .++...    .+.-.+|....+..  ......-...+.++
T Consensus        80 -l~~~d~~tg~~-~~l~~~~~~~~~~~~nd~~vd~~G~i-w~~~~~~~~~~~~g~l~~~~~g~~--~~~~~~~~~~Ng~~  154 (295)
T d2ghsa1          80 -LFLRDTATGVL-TLHAELESDLPGNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVAKGKV--TKLFADISIPNSIC  154 (295)
T ss_dssp             -EEEEETTTCCE-EEEECSSTTCTTEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEETTEE--EEEEEEESSEEEEE
T ss_pred             -cEEeeccccee-eEEeeeecCCCcccceeeEECCCCCE-EEEeccccccccceeEeeecCCcE--EEEeeccCCcceee
Confidence             77888877632 11111111  1235788999999984 444322    23456666665543  22222234568899


Q ss_pred             EcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         780 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       780 fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      |+++++.++++-+..+.|..+++........      +.........+..+...+++++.+|+..++.-+.++++++
T Consensus       155 ~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~------~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~  225 (295)
T d2ghsa1         155 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPT------GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRY  225 (295)
T ss_dssp             ECTTSCEEEEEETTTCEEEEEEBCTTTCCBS------SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred             ecCCCceEEEeecccceeeEeeecccccccc------cceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEe
Confidence            9999998777888889999998764221111      1112222333444567788888888843333334445444

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.57  E-value=0.0061  Score=61.46  Aligned_cols=190  Identities=14%  Similarity=0.138  Sum_probs=116.1

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeecc------CCCCCeeEEEEccCCCeEEEEE-eCCCceee
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVD------AHTAEVNCLSFNPYSEYILATG-SADKTQFE  694 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~------~h~~~V~~l~~sp~g~~llasg-s~Dg~i~~  694 (860)
                      .....+++++ +++++++-..+..|++||.+.    ..+..+.      +.......+++..+....+++. +.++.   
T Consensus        23 ~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~---   94 (279)
T d1q7fa_          23 TEPSGVAVNA-QNDIIVADTNNHRIQIFDKEG----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ---   94 (279)
T ss_dssp             SCEEEEEECT-TCCEEEEEGGGTEEEEECTTS----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE---
T ss_pred             CCccEEEEcC-CCCEEEEECCCCEEEEEeCCC----CEEEEecccCCCcccccccccccccccccccceeccCCccc---
Confidence            3457899998 677888777788999999653    2122221      1112345566655544333333 22333   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeec-CCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEe--ccC
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVD-AHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSF--ESH  771 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~--~~h  771 (860)
                                  |..++...    .....+. .......+++..++|. ++++....+.+.+++.....  +..+  ..+
T Consensus        95 ------------i~~~~~~g----~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~~--~~~~g~~~~  155 (279)
T d1q7fa_          95 ------------IQIYNQYG----QFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNV--LHKFGCSKH  155 (279)
T ss_dssp             ------------EEEECTTS----CEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCE--EEEEECTTT
T ss_pred             ------------cccccccc----cceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCce--eeccccccc
Confidence                        66665532    2222332 2345678899999998 46666667788888866543  3333  345


Q ss_pred             CCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEe--cCccCceEEEEEccCCCeEEEEEe
Q psy4578         772 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       772 ~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~--~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                      ......+++.++|. ++++....+.|++||... ..              +...  .++.....+|+++++|+ ++++.+
T Consensus       156 ~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~G-~~--------------~~~~g~~g~~~~P~giavD~~G~-i~Vad~  218 (279)
T d1q7fa_         156 LEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEG-QY--------------LRQIGGEGITNYPIGVGINSNGE-ILIADN  218 (279)
T ss_dssp             CSSEEEEEECSSSE-EEEEEGGGTEEEEEETTC-CE--------------EEEESCTTTSCSEEEEEECTTCC-EEEEEC
T ss_pred             ccccceeeecccee-EEeeeccccceeeeecCC-ce--------------eeeecccccccCCcccccccCCe-EEEEEC
Confidence            66788999999986 577777889999999653 11              1111  23445577889999988 455543


Q ss_pred             -CCCeEe
Q psy4578         850 -EDNIMQ  855 (860)
Q Consensus       850 -~Dg~Ir  855 (860)
                       .++.|+
T Consensus       219 ~~~~~v~  225 (279)
T d1q7fa_         219 HNNFNLT  225 (279)
T ss_dssp             SSSCEEE
T ss_pred             CCCcEEE
Confidence             344454

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.52  E-value=0.0086  Score=61.76  Aligned_cols=204  Identities=8%  Similarity=0.027  Sum_probs=115.7

Q ss_pred             cccceeeeEeeccCCcEEEEEeCC----CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeee
Q psy4578         620 KLRLLIDVAWHLLHESLFGSVADD----QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEV  695 (860)
Q Consensus       620 ~~~~V~~v~~sp~~~~~lasgs~D----G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~  695 (860)
                      .......+++++ +++++++...+    +.+...+............ ..-......+++.++|+ ++++.. .+.    
T Consensus        80 ~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~nd~~~d~~G~-l~vtd~-~~~----  151 (319)
T d2dg1a1          80 HKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDSKGG-FYFTDF-RGY----  151 (319)
T ss_dssp             SSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECTTSC-EEEEEC-CCB----
T ss_pred             CCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCceeeeeccC-CCcccCCcceeEEeccc-eeeccc-ccc----
Confidence            334577899998 67777665432    2344444443221111111 11134578899999997 455432 221    


Q ss_pred             cccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeE-------Ee
Q psy4578         696 EEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLH-------SF  768 (860)
Q Consensus       696 ~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~-------~~  768 (860)
                          .....+.+..++....    .+..+...-...+.++|+|+++.++++-+..+.|..||+........       ..
T Consensus       152 ----~~~~~g~v~~~~~dg~----~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~  223 (319)
T d2dg1a1         152 ----STNPLGGVYYVSPDFR----TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY  223 (319)
T ss_dssp             ----TTBCCEEEEEECTTSC----CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred             ----cccCcceeEEEecccc----eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeec
Confidence                0111223544544332    22222223344678999999987677778889999999864322111       11


Q ss_pred             ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578         769 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       769 ~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                      .........+++..+|+ +.++....+.|.+||- .++....+....        ...++...+++++|.+++..++++.
T Consensus       224 ~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p-~G~~l~~i~~P~--------~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         224 FTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNK-RGYPIGQILIPG--------RDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             CCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECT-TSCEEEEEECTT--------GGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             cCCccceeeeeEcCCCC-EEEEEcCCCEEEEECC-CCcEEEEEeCCC--------cCCCcCceeeeEEEeCCCCEEEEEc
Confidence            11223456799999997 5777778899999995 443322221100        0114455688999999888666665


Q ss_pred             e
Q psy4578         849 S  849 (860)
Q Consensus       849 s  849 (860)
                      .
T Consensus       294 ~  294 (319)
T d2dg1a1         294 N  294 (319)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.33  E-value=0.0033  Score=65.02  Aligned_cols=121  Identities=9%  Similarity=0.203  Sum_probs=82.2

Q ss_pred             CeeEEEEccCCC----eEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCC---eeeecC-CCCCeEEEEEcCCC
Q psy4578         669 EVNCLSFNPYSE----YILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKP---SHTVDA-HTAEVNCLSFNPYS  740 (860)
Q Consensus       669 ~V~~l~~sp~g~----~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~---~~~~~~-h~~~I~sl~~sp~g  740 (860)
                      ..+.++|+|++.    .++++.+..+.               |..||+........   ...+.+ +......+++..+|
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~---------------i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G  237 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKK---------------LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN  237 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTE---------------EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccc---------------eEEeeccCccccceeeEEEEccccccccceeeEEecCC
Confidence            346789988764    45566666666               55665543211000   111111 12345689999999


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCC
Q psy4578         741 EYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG  806 (860)
Q Consensus       741 ~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~  806 (860)
                      + ++++....+.|.+||.+++.. ...+.......++++|.|+++.+++|.+.+|.|...++....
T Consensus       238 n-lyVa~~~~g~I~~~dp~~g~~-~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         238 N-LLVANWGSSHIEVFGPDGGQP-KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             C-EEEEEETTTEEEEECTTCBSC-SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             c-EEEEEcCCCEEEEEeCCCCEE-EEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            8 677777789999999887764 455555556789999999998778888888999999987644

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.086  Score=52.41  Aligned_cols=167  Identities=9%  Similarity=0.050  Sum_probs=105.6

Q ss_pred             hcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCe-eeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecc
Q psy4578         619 DKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPS-HTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEE  697 (860)
Q Consensus       619 ~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~-~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~  697 (860)
                      .....+.++.|++..+.++.+=..++.|.-.++......... .........+.++++.+.+..+..+-...+.      
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~------  100 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT------  100 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTE------
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCE------
Confidence            445567889999855666665556677777666532111111 2222333557788998878877776665565      


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEee-CCCcEEEEeCCCCceeeEEeccCCCceE
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGS-ADKTVALWDLRNLKLKLHSFESHKDEIF  776 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~  776 (860)
                               |.+.++...   ..............+++.+|...+++.+.. ..+.|.-.++..... .......-....
T Consensus       101 ---------I~v~~~~g~---~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~-~~l~~~~~~~p~  167 (266)
T d1ijqa1         101 ---------VSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPN  167 (266)
T ss_dssp             ---------EEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEE
T ss_pred             ---------EEeEecCCc---eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce-ecccccccceee
Confidence                     888888754   222333444566889999997776666542 345677777776553 222333345678


Q ss_pred             EEEEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         777 QVQWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       777 ~l~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ++++++.++.+.++-+..+.|...++..
T Consensus       168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEeeccccEEEEecCCcCEEEEEECCC
Confidence            9999998887676667778999888865

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.21  Score=49.31  Aligned_cols=162  Identities=6%  Similarity=0.038  Sum_probs=104.8

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeeccccc
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEE  700 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~  700 (860)
                      ...+.+++|.+.++.++.+-..++.|...++.....   ...+......+.++++..-++.+..+-...+.         
T Consensus        35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~---~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~---------  102 (263)
T d1npea_          35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDR---------  102 (263)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---EEEECTTCCCEEEEEEETTTTEEEEEETTTTE---------
T ss_pred             CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc---EEEEEeccccccEEEEeccCCeEEEeccCCCE---------
Confidence            345788999986666666666778899888875322   22222233568899998777776666655555         


Q ss_pred             ccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCc--EEEEeCCCCceeeEEeccCCCceEEE
Q psy4578         701 ENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKT--VALWDLRNLKLKLHSFESHKDEIFQV  778 (860)
Q Consensus       701 ~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~--I~IWDl~~~~~~~~~~~~h~~~V~~l  778 (860)
                            |.+.++....   ..............++.+|.+.+++.+-...+.  |.--++..... .......-....++
T Consensus       103 ------I~~~~~dg~~---~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~~~~~~P~gl  172 (263)
T d1npea_         103 ------IEVAKMDGTQ---RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGL  172 (263)
T ss_dssp             ------EEEEETTSCS---CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEE
T ss_pred             ------EEEEecCCce---EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeeeecccccceE
Confidence                  8888887542   112223334568899999988876666433333  44446655443 22222333567899


Q ss_pred             EEcCCCCCEEEEEECCCcEEEEECCC
Q psy4578         779 QWSPHNETILASSGTDRRLHVWDLSK  804 (860)
Q Consensus       779 ~fsp~g~~lL~tgs~Dg~I~iWdl~~  804 (860)
                      ++++.++.+.++-...+.|...++..
T Consensus       173 aiD~~~~~lYw~d~~~~~I~~~~~~g  198 (263)
T d1npea_         173 TFDAFSSQLCWVDAGTHRAECLNPAQ  198 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTE
T ss_pred             EEeecCcEEEEEeCCCCEEEEEECCC
Confidence            99988877666666778898888875

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.025  Score=61.55  Aligned_cols=164  Identities=6%  Similarity=-0.020  Sum_probs=90.8

Q ss_pred             ccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCCC-----------------CeeEEEEccCCCeEE
Q psy4578         621 LRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHTA-----------------EVNCLSFNPYSEYIL  683 (860)
Q Consensus       621 ~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~~-----------------~V~~l~~sp~g~~ll  683 (860)
                      .+.+....|+| +++.+|-.. ++.|.+.+..++...+  .+..+..+                 .-..+-|||||++++
T Consensus       113 ~~~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~--lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~ia  188 (465)
T d1xfda1         113 NAKLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIR--VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA  188 (465)
T ss_dssp             SCCCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEE--EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred             ccccceeeecc-CCceEEEEe-cceEEEEecCCCceEE--EecccCcceeeccccchhhhhhhccccceEEECCCCCeEE
Confidence            34567789999 555555544 5678888776542211  11112111                 124678999999866


Q ss_pred             EEEeCCCceeeeccccc----------------c--cCCCcEEEEeCCCCCCCCC---eeeecCCCCCeEEEEEcCCCCc
Q psy4578         684 ATGSADKTQFEVEEEEE----------------E--NYDQKLMIWDTRSHNVSKP---SHTVDAHTAEVNCLSFNPYSEY  742 (860)
Q Consensus       684 asgs~Dg~i~~~~~~~~----------------~--~~dg~I~iwDl~~~~~~~~---~~~~~~h~~~I~sl~~sp~g~~  742 (860)
                      ..-.++..+..+.....                +  .....+.++|+.++.....   ..........+..+.|+|++..
T Consensus       189 f~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~  268 (465)
T d1xfda1         189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV  268 (465)
T ss_dssp             EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred             EEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeE
Confidence            65555555433332211                1  1123578889876532110   0111223335788999999885


Q ss_pred             EEEEeeCC---CcEEEEeCCCCceeeEEeccCCCce----EEEEEcCCCCCEE
Q psy4578         743 ILATGSAD---KTVALWDLRNLKLKLHSFESHKDEI----FQVQWSPHNETIL  788 (860)
Q Consensus       743 llasgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V----~~l~fsp~g~~lL  788 (860)
                      ++.....+   ..+.++|..++......-....+.|    ....|+|+|+.++
T Consensus       269 ~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~  321 (465)
T d1xfda1         269 AVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF  321 (465)
T ss_dssp             EEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred             EEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeE
Confidence            44444433   3588899998876322222222222    3457899998643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.27  Score=48.56  Aligned_cols=178  Identities=10%  Similarity=-0.006  Sum_probs=107.4

Q ss_pred             CcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCC-Cee
Q psy4578         644 QKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSK-PSH  722 (860)
Q Consensus       644 G~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~-~~~  722 (860)
                      ..|+-.++.+...    ..+......+..+.|++..+.++.+-...+.               |.-.++....... ...
T Consensus        10 ~~I~~~~l~~~~~----~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~---------------I~~~~l~~~~~~~~~~~   70 (266)
T d1ijqa1          10 HEVRKMTLDRSEY----TSLIPNLRNVVALDTEVASNRIYWSDLSQRM---------------ICSTQLDRAHGVSSYDT   70 (266)
T ss_dssp             SSEEEEETTSCCC----EEEECSCSSEEEEEEETTTTEEEEEETTTTE---------------EEEEEC--------CEE
T ss_pred             CeEEEEECCCCcc----eeeeCCCCceEEEEEEeCCCEEEEEECCCCE---------------EEEEEecCCCCCcceEE
Confidence            3588888876432    2222345567899999988877766555555               5555554321111 112


Q ss_pred             eecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEE-CCCcEEEEE
Q psy4578         723 TVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TDRRLHVWD  801 (860)
Q Consensus       723 ~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs-~Dg~I~iWd  801 (860)
                      ........+.++++.+.+..+..+-...+.|.+.++..... ............+++.+|...+++++.. ..+.|.-.+
T Consensus        71 ~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~-~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~  149 (266)
T d1ijqa1          71 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  149 (266)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceE-EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEec
Confidence            22223345678888887777777777788999999987765 3334445567889999997766666543 344566666


Q ss_pred             CCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         802 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       802 l~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                      +......              ......-....++++++.+..|.++-+..+.|.
T Consensus       150 ~dGs~~~--------------~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~  189 (266)
T d1ijqa1         150 LNGVDIY--------------SLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  189 (266)
T ss_dssp             TTSCCEE--------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cCCCcee--------------cccccccceeeEEEeeccccEEEEecCCcCEEE
Confidence            5542111              111122344677888887777777766665554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.38  E-value=0.29  Score=48.26  Aligned_cols=179  Identities=6%  Similarity=0.039  Sum_probs=108.5

Q ss_pred             CcEEEEEcCCCCccc--CeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCe
Q psy4578         644 QKLMIWDTRSHNVSK--PSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPS  721 (860)
Q Consensus       644 G~I~IWd~~~~~~~~--~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~  721 (860)
                      +.|+-.+++......  ....+..+...+..++|.+.++.++.+-..++.               |...++...   ...
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~---------------I~~~~l~g~---~~~   71 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPS---------------IGRASLHGG---EPT   71 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTE---------------EEEEESSSC---CCE
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCe---------------EEEEEcccC---CcE
Confidence            577777776432211  112222334457789999888877776656665               777777654   222


Q ss_pred             eeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEE-
Q psy4578         722 HTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW-  800 (860)
Q Consensus       722 ~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iW-  800 (860)
                      ..+......+.++++..-+..+..+-...+.|.+.++..... .............++++|.+.+++.+-...+..+|| 
T Consensus        72 ~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r  150 (263)
T d1npea_          72 TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET  150 (263)
T ss_dssp             EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred             EEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEE
Confidence            223333356788999877776667777788999999987664 223333346789999999888766665443343444 


Q ss_pred             -ECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEe
Q psy4578         801 -DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ  855 (860)
Q Consensus       801 -dl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~Ir  855 (860)
                       ++.....             ... ....-....++++++.++.|.++-...+.|.
T Consensus       151 ~~~dG~~~-------------~~i-~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         151 SHMDGTNR-------------RIL-AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             EETTSCCC-------------EEE-ECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ecCCCCCc-------------eee-eeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence             4433111             111 1122245678888888777777766555554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.24  E-value=0.036  Score=54.44  Aligned_cols=81  Identities=9%  Similarity=0.231  Sum_probs=48.8

Q ss_pred             EEeeccchhhhhhhhhcccceeeeEeeccCCcEEE-EEeCCC-----cEEEEEcCCCCcccCeeec----cCCCCCeeEE
Q psy4578         604 MYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFG-SVADDQ-----KLMIWDTRSHNVSKPSHTV----DAHTAEVNCL  673 (860)
Q Consensus       604 l~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~la-sgs~DG-----~I~IWd~~~~~~~~~~~~~----~~h~~~V~~l  673 (860)
                      +|+.+...++..++..+.+.+...+|+| +++.|| +...++     .|.+++..++...+ +...    ..........
T Consensus        23 l~~~d~~~g~~~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~-lt~~~~~~~~~~~~~~~~  100 (281)
T d1k32a2          23 LWEHDLKSGSTRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR-ITYFSGKSTGRRMFTDVA  100 (281)
T ss_dssp             EEEEETTTCCEEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-CCCCCEEEETTEECSEEE
T ss_pred             EEEEECCCCCEEEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE-eeecCCCccCcccccccc
Confidence            5666777777777777778899999999 555554 443333     35566665543211 1110    1112345678


Q ss_pred             EEccCCCeEEEEE
Q psy4578         674 SFNPYSEYILATG  686 (860)
Q Consensus       674 ~~sp~g~~llasg  686 (860)
                      .|+|+|+.++.+.
T Consensus       101 ~~spdg~~l~~~~  113 (281)
T d1k32a2         101 GFDPDGNLIISTD  113 (281)
T ss_dssp             EECTTCCEEEEEC
T ss_pred             ccCCCCCEEEEEE
Confidence            9999999755443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.99  E-value=0.013  Score=57.82  Aligned_cols=102  Identities=14%  Similarity=0.065  Sum_probs=64.6

Q ss_pred             EEcCC--CCcEEEEeeCCCcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECCC-----cEEEEECCCCCc
Q psy4578         735 SFNPY--SEYILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR-----RLHVWDLSKIGE  807 (860)
Q Consensus       735 ~~sp~--g~~llasgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg-----~I~iWdl~~~~~  807 (860)
                      ..+|+  |+.++.++  +|.|.+.|+.++..  ..+..+.+.+...+|||||+++.++...++     .|.+++...+..
T Consensus         5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~--~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGST--RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEE--TTEEEEEETTTCCE--EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEEe--CCcEEEEECCCCCE--EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            35788  98755554  45688889998774  556667788899999999998655554332     366667666443


Q ss_pred             ccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEE
Q psy4578         808 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       808 ~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasg  848 (860)
                      .+....        -..............|+|+|+.++.+.
T Consensus        81 ~~lt~~--------~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          81 KRITYF--------SGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EECCCC--------CEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEeeec--------CCCccCccccccccccCCCCCEEEEEE
Confidence            221110        001111223456788999999766543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.48  E-value=0.059  Score=56.72  Aligned_cols=162  Identities=7%  Similarity=0.100  Sum_probs=86.7

Q ss_pred             CCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEc--CCCCcEEEEeeCC-----
Q psy4578         678 YSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFN--PYSEYILATGSAD-----  750 (860)
Q Consensus       678 ~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~s--p~g~~llasgs~D-----  750 (860)
                      ||+++++....++.               |.+.|+.+.++.+ +..+ .....+..+...  |+..| ++.++.+     
T Consensus        98 DGrylFVNDkan~R---------------VAvIdl~~fkt~k-Ii~i-Pn~~~~HG~r~~~~p~T~Y-V~~~~e~~vP~p  159 (459)
T d1fwxa2          98 DGRFLFMNDKANTR---------------VARVRCDVMKCDA-ILEI-PNAKGIHGLRPQKWPRSNY-VFCNGEDETPLV  159 (459)
T ss_dssp             EEEEEEEEETTTTE---------------EEEEETTTTEEEE-EEEC-SSCCSEEEEEECCSSBCSE-EEEEECSCEESS
T ss_pred             ceeEEEEEcCCCce---------------EEEEECcceeeeE-EEec-CCCCCCceeecccCCCeEE-EEccCccccccC
Confidence            67776666666665               8888888764322 2222 234456666654  44555 3333332     


Q ss_pred             -------------CcEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEECC-C-------------cEEEEECC
Q psy4578         751 -------------KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD-R-------------RLHVWDLS  803 (860)
Q Consensus       751 -------------g~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~D-g-------------~I~iWdl~  803 (860)
                                   +.+.++|..+.+. ..+... .+....+.++++|++.++++-.. .             .+.+++..
T Consensus       160 ndg~~l~d~~~y~~~~t~ID~~tm~V-~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~  237 (459)
T d1fwxa2         160 NDGTNMEDVANYVNVFTAVDADKWEV-AWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA  237 (459)
T ss_dssp             CSSSSTTCGG-EEEEEEEEETTTTEE-EEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred             CCCccccchhhcceEEEEEecCCceE-EEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechH
Confidence                         3366788888775 332221 23456789999999866665321 1             23334332


Q ss_pred             CCCcc------------cccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee-ccCC
Q psy4578         804 KIGEE------------QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK-PFKK  860 (860)
Q Consensus       804 ~~~~~------------~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI-~f~k  860 (860)
                      .....            ..+..........+.... -......+..+|||+|+++++..+.++.| +|.|
T Consensus       238 rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         238 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             HHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             HhHHhhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence            11000            000000000001111111 11234578999999999999999999886 6654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.20  E-value=6.6  Score=39.46  Aligned_cols=97  Identities=10%  Similarity=0.014  Sum_probs=58.6

Q ss_pred             cEEEEeCCCCCC-CCCeeeec-CCCCCeEEEEEcCCCCcEEEEee--C-------------CCcEEEEeCCCCceeeEEe
Q psy4578         706 KLMIWDTRSHNV-SKPSHTVD-AHTAEVNCLSFNPYSEYILATGS--A-------------DKTVALWDLRNLKLKLHSF  768 (860)
Q Consensus       706 ~I~iwDl~~~~~-~~~~~~~~-~h~~~I~sl~~sp~g~~llasgs--~-------------Dg~I~IWDl~~~~~~~~~~  768 (860)
                      .|.+|++..... ...+.++. ......+.++...++. +++|-.  .             -+...+|..+....  ...
T Consensus       125 ~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~--~~~  201 (340)
T d1v04a_         125 TVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV--RVV  201 (340)
T ss_dssp             EEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE--EEE
T ss_pred             eeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce--EEE
Confidence            488888765421 11112222 1224568888888887 466621  0             12334444444433  222


Q ss_pred             ccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCC
Q psy4578         769 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  805 (860)
Q Consensus       769 ~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~  805 (860)
                      ...-...+.++++|++++++++-+..+.|+.|++...
T Consensus       202 ~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         202 AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            2223567899999999988888888999999998753

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.72  E-value=0.88  Score=47.52  Aligned_cols=203  Identities=11%  Similarity=0.099  Sum_probs=104.9

Q ss_pred             CCcEEE-EEeCCCcEEEEEcCCCCcccCeeeccCCCCCeeEEEEccC--CCeEEEEEeCCCceeee----cccccccCCC
Q psy4578         633 HESLFG-SVADDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSADKTQFEV----EEEEEENYDQ  705 (860)
Q Consensus       633 ~~~~la-sgs~DG~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~--g~~llasgs~Dg~i~~~----~~~~~~~~dg  705 (860)
                      +|++++ .-..+++|.+-|+.+-+..+.+ .+ .....+..+...++  -.| ++.++.+.. -+-    .++......+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi-~i-Pn~~~~HG~r~~~~p~T~Y-V~~~~e~~v-P~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAIL-EI-PNAKGIHGLRPQKWPRSNY-VFCNGEDET-PLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEE-EC-SSCCSEEEEEECCSSBCSE-EEEEECSCE-ESSCSSSSTTCGG-EEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEE-ec-CCCCCCceeecccCCCeEE-EEccCcccc-ccCCCCccccchhhcce
Confidence            355544 4457889999999874332222 22 23455676666544  445 333333221 100    0111123345


Q ss_pred             cEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-----------------------------------
Q psy4578         706 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-----------------------------------  750 (860)
Q Consensus       706 ~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-----------------------------------  750 (860)
                      .+.++|..+.+.   ...+. -.+....++++|+|+++++++-..                                   
T Consensus       174 ~~t~ID~~tm~V---~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~  249 (459)
T d1fwxa2         174 VFTAVDADKWEV---AWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ  249 (459)
T ss_dssp             EEEEEETTTTEE---EEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred             EEEEEecCCceE---EEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcE
Confidence            577788876532   22221 123456789999999866665321                                   


Q ss_pred             --CcEEEEeCCCC--ceeeEEeccCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcccccccccCCCCccEEEec
Q psy4578         751 --KTVALWDLRNL--KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG  826 (860)
Q Consensus       751 --g~I~IWDl~~~--~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~  826 (860)
                        +.+.+-|.+..  ...+.... -......+.++|||+++++++..+.++.++|++.......-   ...+...+....
T Consensus       250 eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~---~~~~~~~~~~e~  325 (459)
T d1fwxa2         250 ELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE---NADPRSAVVAEP  325 (459)
T ss_dssp             EETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS---CC-GGGGEEECC
T ss_pred             EeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcc---cCCccccEEeec
Confidence              22333443321  11111121 12234568899999998888889999999999864322100   001122222222


Q ss_pred             CccCceEEEEEccCCCeEEEEE
Q psy4578         827 GHTAKISDFSWNPNEPWVICSV  848 (860)
Q Consensus       827 ~h~~~I~~i~~spdg~~Llasg  848 (860)
                      ...-.-..-+|+..|. ...|.
T Consensus       326 elglgPLht~fd~~g~-aytsl  346 (459)
T d1fwxa2         326 ELGLGPLHTAFDGRGN-AYTSL  346 (459)
T ss_dssp             BCCSCEEEEEECTTSE-EEEEE
T ss_pred             ccCcCccccccCCCce-EEEEe
Confidence            2333455667777774 34443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.16  E-value=9.7  Score=39.29  Aligned_cols=128  Identities=11%  Similarity=0.134  Sum_probs=68.0

Q ss_pred             ceeeeEeeccCCcEEEEEeCCC----cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeec-c
Q psy4578         623 LLIDVAWHLLHESLFGSVADDQ----KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVE-E  697 (860)
Q Consensus       623 ~V~~v~~sp~~~~~lasgs~DG----~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~-~  697 (860)
                      .+..++++|++..++++-+.+|    .++++|+.+++...  ..+.  ......++|++++..++.+.-.... ...+ .
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~--~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~-~~~~~~  200 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP--DVLE--RVKFSCMAWTHDGKGMFYNAYPQQD-GKSDGT  200 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE--EEEE--EECSCCEEECTTSSEEEEEECCCCS-SCCSSS
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecc--cccc--cccccceEEcCCCCEEEEEEecccc-Cccccc
Confidence            3456778885444455555444    59999999864311  1111  1122568999999986666533211 0000 0


Q ss_pred             cccccCCCcEEEEeCCCCCCCCCeeeecC--CCCCeEEEEEcCCCCcEEEEeeC--CCcEEEE
Q psy4578         698 EEEENYDQKLMIWDTRSHNVSKPSHTVDA--HTAEVNCLSFNPYSEYILATGSA--DKTVALW  756 (860)
Q Consensus       698 ~~~~~~dg~I~iwDl~~~~~~~~~~~~~~--h~~~I~sl~~sp~g~~llasgs~--Dg~I~IW  756 (860)
                      ........+|..|.+.+... .....+..  ....+..+..++++.+++++.+.  ++...+|
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~-~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~  262 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQS-EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW  262 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGG-GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred             ccccCCcceEEEEECCCCcc-ccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEE
Confidence            00111233577777776532 22223332  23456678889999987665432  3444444

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.96  E-value=8.1  Score=38.02  Aligned_cols=187  Identities=12%  Similarity=0.173  Sum_probs=114.4

Q ss_pred             EEEeeccchhhhhhhhhcccceeeeEeeccCCcEEEEEeCCCcEEEEEcCCCCcccCeeeccCCC----CCeeEEEEccC
Q psy4578         603 VMYLENKTRAQICQLLDKLRLLIDVAWHLLHESLFGSVADDQKLMIWDTRSHNVSKPSHTVDAHT----AEVNCLSFNPY  678 (860)
Q Consensus       603 il~l~n~~~~~l~~l~~~~~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~~~~~~~~~~~~~h~----~~V~~l~~sp~  678 (860)
                      .+.+.|.+..+......-..+|.-=.|-.  .+.|+-.+. ..|.-|+++..  ..+...+..|.    ..|-.-..+++
T Consensus        84 ~LQiFnletK~klks~~~~e~VvfWkWis--~~~L~lVT~-taVYHW~~~g~--s~P~k~fdR~~~L~~~QIInY~~d~~  158 (327)
T d1utca2          84 TLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVTD-NAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAK  158 (327)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCEEEESS--SSEEEEECS-SEEEEEESSSS--CCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred             eEEEEehhHhhhhceEEcCCCcEEEEecC--CCEEEEEcC-CceEEEcccCC--CCchhhhhhcccccCceEEEEEECCC
Confidence            35556666666666666667887777873  555555543 58999999653  24555554443    46777788899


Q ss_pred             CCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCC--CCcEEEEeeC---CCcE
Q psy4578         679 SEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPY--SEYILATGSA---DKTV  753 (860)
Q Consensus       679 g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~--g~~llasgs~---Dg~I  753 (860)
                      +++++++|=...         .+.-.|.+.+|..+.    +....+.||.+....+...-+  -..+++-+..   .+.+
T Consensus       159 ~kW~~l~GI~~~---------~~~i~G~mQLYS~er----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kL  225 (327)
T d1utca2         159 QKWLLLTGISAQ---------QNRVVGAMQLYSVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  225 (327)
T ss_dssp             SCEEEEEEEEEE---------TTEEEEEEEEEETTT----TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred             CCEEEEEeEecC---------CCceeEEEEEEEecc----CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEE
Confidence            998777773211         112347799999876    344567777655544443321  1224444332   3678


Q ss_pred             EEEeCCCCc---eee--EE--e--c--cCCCceEEEEEcCCCCCEEEEEECCCcEEEEECCCCCcc
Q psy4578         754 ALWDLRNLK---LKL--HS--F--E--SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE  808 (860)
Q Consensus       754 ~IWDl~~~~---~~~--~~--~--~--~h~~~V~~l~fsp~g~~lL~tgs~Dg~I~iWdl~~~~~~  808 (860)
                      +|-++....   .+.  ..  .  .  ....-..++..++.-. ++..-+.-|.+++||+.++.+.
T Consensus       226 hIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         226 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             EEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccccEE
Confidence            888886532   110  11  1  0  1233445677777665 5788899999999999996553

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.68  E-value=1.4  Score=46.15  Aligned_cols=108  Identities=14%  Similarity=0.133  Sum_probs=67.0

Q ss_pred             CeEEEEEcCCCCcEEEEeeCCC----cEEEEeCCCCceeeEEeccCCCceEEEEEcCCCCCEEEEEEC------------
Q psy4578         730 EVNCLSFNPYSEYILATGSADK----TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT------------  793 (860)
Q Consensus       730 ~I~sl~~sp~g~~llasgs~Dg----~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g~~lL~tgs~------------  793 (860)
                      .+...+++|++++++++-+.+|    .++++|+.+++..-..+..  .....++|.+++..++.+.-.            
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            3455678999998666655555    5999999999863333332  112468899999876555421            


Q ss_pred             ---CCcEEEEECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEe
Q psy4578         794 ---DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS  849 (860)
Q Consensus       794 ---Dg~I~iWdl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs  849 (860)
                         ...+..|.+.+....          ..+++........+..+..+.++++++++.+
T Consensus       204 ~~~~~~v~~h~lgt~~~~----------d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~  252 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSE----------DILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (430)
T ss_dssp             CCCCCEEEEEETTSCGGG----------CEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cCCcceEEEEECCCCccc----------cccccccccCCceEEeeeccCCcceeeEEee
Confidence               125667776653221          1233333333345677888999998776554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.63  E-value=7.6  Score=39.70  Aligned_cols=141  Identities=15%  Similarity=0.118  Sum_probs=82.2

Q ss_pred             cceeeeEeeccCCcEEEEEeCCCcEEEEEcCC-------CCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceee
Q psy4578         622 RLLIDVAWHLLHESLFGSVADDQKLMIWDTRS-------HNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFE  694 (860)
Q Consensus       622 ~~V~~v~~sp~~~~~lasgs~DG~I~IWd~~~-------~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~  694 (860)
                      ....-++.++ ...+++.|+.++ +.|..+.+       ........ ....-..|..++|+.  +. ++.... +.   
T Consensus        37 ~~~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~-~~~~ip~v~~vafs~--d~-l~v~~~-~~---  106 (381)
T d1xipa_          37 ASLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPDVIFVCFHG--DQ-VLVSTR-NA---  106 (381)
T ss_dssp             SCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTTEEEEEEET--TE-EEEEES-SE---
T ss_pred             cccceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcce-eccCCCCeEEEEeeC--CE-EEEEeC-CC---
Confidence            4566788886 566777777764 67776431       00001110 011123688899974  33 344333 33   


Q ss_pred             ecccccccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCCCcEEEEeCCCCcee-e----EEec
Q psy4578         695 VEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTVALWDLRNLKLK-L----HSFE  769 (860)
Q Consensus       695 ~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~Dg~I~IWDl~~~~~~-~----~~~~  769 (860)
                                  +..++....   ........-...+.++.++|..   ++....+|.+.++++..+... +    ..+.
T Consensus       107 ------------l~~~~~~~l---~~~~~~~~~~~~~~~~~~~p~~---~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~  168 (381)
T d1xipa_         107 ------------LYSLDLEEL---SEFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQLAQNVTSFD  168 (381)
T ss_dssp             ------------EEEEESSST---TCEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEEEEESEEEEE
T ss_pred             ------------EEEEEeecc---ccccccccccccccceecCCce---eEEEecCCCEEEEEeccCccccccCCcceEE
Confidence                        677777654   2233333345678899998853   556677899999999887641 1    1111


Q ss_pred             cCCCceEEEEEcCCCCCEEEEEE
Q psy4578         770 SHKDEIFQVQWSPHNETILASSG  792 (860)
Q Consensus       770 ~h~~~V~~l~fsp~g~~lL~tgs  792 (860)
                       -.+.+.+++|++.|.. ++++.
T Consensus       169 -~~~~~~~v~ws~kgkq-~v~~~  189 (381)
T d1xipa_         169 -VTNSQLAVLLKDRSFQ-SFAWR  189 (381)
T ss_dssp             -ECSSEEEEEETTSCEE-EEEEE
T ss_pred             -ecCCceEEEEeCCcEE-EEEeC
Confidence             2356788888887765 55553

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=89.59  E-value=1.7  Score=44.19  Aligned_cols=98  Identities=18%  Similarity=0.160  Sum_probs=60.4

Q ss_pred             cEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC-CcEEEEeCCCCceeeEEeccCCCceEEEEEcCCC
Q psy4578         706 KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD-KTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN  784 (860)
Q Consensus       706 ~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D-g~I~IWDl~~~~~~~~~~~~h~~~V~~l~fsp~g  784 (860)
                      .+.+||..++...........|.....+.++.++|. +++.|+.+ ..+.+||..+..............-.+++..++|
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG  131 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG  131 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecCccCcccccccccccccccceeeecCC
Confidence            367899998754332222333444455678889998 57777654 6899999988765211111111223456677788


Q ss_pred             CCEEEEEECC------CcEEEEECCCC
Q psy4578         785 ETILASSGTD------RRLHVWDLSKI  805 (860)
Q Consensus       785 ~~lL~tgs~D------g~I~iWdl~~~  805 (860)
                      + +++.|+.+      ..+.+||..+.
T Consensus       132 ~-v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         132 R-VFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             C-EEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             c-eeeeccccccccccceeeeecCCCC
Confidence            7 46666632      46899998774

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.63  E-value=8.2  Score=38.71  Aligned_cols=167  Identities=10%  Similarity=0.081  Sum_probs=85.4

Q ss_pred             eeEEEEccCCCeEEEEEeCCCceeeecccccccCCCcEEEEeCCCCCCCCCeeeecCCC-----CCeEEEEE--cCCCCc
Q psy4578         670 VNCLSFNPYSEYILATGSADKTQFEVEEEEEENYDQKLMIWDTRSHNVSKPSHTVDAHT-----AEVNCLSF--NPYSEY  742 (860)
Q Consensus       670 V~~l~~sp~g~~llasgs~Dg~i~~~~~~~~~~~dg~I~iwDl~~~~~~~~~~~~~~h~-----~~I~sl~~--sp~g~~  742 (860)
                      .-+++..|+|..+++||..-+.+..+    .....|.|.++|+.+.........+.+..     -....+..  .++|..
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~----~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~  112 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSF----DPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV  112 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC------------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCC----CCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE
Confidence            45678888887544444222211111    11234679999987653211111111111     11233333  456664


Q ss_pred             EEEEee---CCCcEEEEeCCCCcee---eEEec-cCCCceEEEEEcCCCCCEEEEEEC---C------------CcEEEE
Q psy4578         743 ILATGS---ADKTVALWDLRNLKLK---LHSFE-SHKDEIFQVQWSPHNETILASSGT---D------------RRLHVW  800 (860)
Q Consensus       743 llasgs---~Dg~I~IWDl~~~~~~---~~~~~-~h~~~V~~l~fsp~g~~lL~tgs~---D------------g~I~iW  800 (860)
                      .|++..   ...+|.+|++......   +.+.. ......+++++..+|. +++|-..   +            +.-.+|
T Consensus       113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEE
Confidence            455443   3567888887644321   12222 1234578888888886 3656310   0            122333


Q ss_pred             ECCCCCcccccccccCCCCccEEEecCccCceEEEEEccCCCeEEEEEeCCCeEee
Q psy4578         801 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQK  856 (860)
Q Consensus       801 dl~~~~~~~~~~~~~~~~~~~i~~~~~h~~~I~~i~~spdg~~Llasgs~Dg~IrI  856 (860)
                      ..+...               .......-..-..|+++||+++++++.+..+.|++
T Consensus       192 ~~~~~~---------------~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~  232 (340)
T d1v04a_         192 YYSPND---------------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHV  232 (340)
T ss_dssp             EECSSC---------------EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             EEcCCc---------------eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEE
Confidence            333211               11111223457889999999999999888888765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=85.72  E-value=3.3  Score=41.78  Aligned_cols=115  Identities=16%  Similarity=0.171  Sum_probs=67.5

Q ss_pred             ccCCcEEEEEeCCC-----------cEEEEEcCCCCcccCeeeccCCCCCeeEEEEccCCCeEEEEEeCCCceeeecccc
Q psy4578         631 LLHESLFGSVADDQ-----------KLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSADKTQFEVEEEE  699 (860)
Q Consensus       631 p~~~~~lasgs~DG-----------~I~IWd~~~~~~~~~~~~~~~h~~~V~~l~~sp~g~~llasgs~Dg~i~~~~~~~  699 (860)
                      +.++++++.|+.+.           .+.+||..++.-.........+.......++.++|. +++.|+.++.        
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~--------   98 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAK--------   98 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTT--------
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCc--------
Confidence            44677777777421           367899987643222222233444455677888887 5777765532        


Q ss_pred             cccCCCcEEEEeCCCCCCCCCeeeecCCCCCeEEEEEcCCCCcEEEEeeCC------CcEEEEeCCCCce
Q psy4578         700 EENYDQKLMIWDTRSHNVSKPSHTVDAHTAEVNCLSFNPYSEYILATGSAD------KTVALWDLRNLKL  763 (860)
Q Consensus       700 ~~~~dg~I~iwDl~~~~~~~~~~~~~~h~~~I~sl~~sp~g~~llasgs~D------g~I~IWDl~~~~~  763 (860)
                            .+.+||..+... .....+... ..-.+.+..++|. +++.|+.+      ..+.+||..+...
T Consensus        99 ------~~~~yd~~~~~w-~~~~~~~~~-r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3          99 ------KTSLYDSSSDSW-IPGPDMQVA-RGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             ------CEEEEEGGGTEE-EECCCCSSC-CSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ------ceeEecCccCcc-ccccccccc-ccccceeeecCCc-eeeeccccccccccceeeeecCCCCce
Confidence                  388999877532 111122211 2224566777888 57776643      4689999887653