Psyllid ID: psy4594

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MSGDDKKVRVLSYPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSFPF
Secondary Structure (PSIPRED)
ccccEEEEEEEEccccccccEEEEEcccccEEEEccEEEEEcccEEEEEEHHccccccccccccEEEEEEcccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEcccccHHHEEEccccEEEEEEccEEEEEcccHHHHHHHHHHHHHHHcccccEEEEEEccccHHEEcccc
Coil and Loop (DISEMBL)
msgddkkvrvlsypnkpfypsssnrkeFGTALILDGiiqctefdefsysemiaflplcshpnpkkVLIFTVggstvqysfpf
Flexible Loop (DISEMBL)
msgddkkvrvlsypnkpfypsssnrKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGStvqysfpf
Low Complexity Region (SEG)
MSGDDKKVRVLSYPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSFPF
Disordered region (IsUnstruct)
**************************EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQY****
Disordered Region (DISOPRED)
****DKKVRVLSYPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSFPF
Disordered Region (DISEMBL)
********RVLSYPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSFPF
Disordered Region (DISPRO)
****DKKVRVLSYPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSFPF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGDDKKVRVLSYPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSFPF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
P19623	302	Spermidine synthase OS=Ho	yes	N/A	0.621	0.168	0.686	1e-14
Q64674	302	Spermidine synthase OS=Mu	yes	N/A	0.621	0.168	0.686	2e-14
Q12455	300	Spermine synthase OS=Sacc	yes	N/A	0.621	0.17	0.568	2e-11
Q09741	298	Spermidine synthase OS=Sc	yes	N/A	0.853	0.234	0.5	6e-11
O48660	314	Spermidine synthase OS=Ni	N/A	N/A	0.731	0.191	0.531	9e-11
Q9Y8H7	291	Spermidine synthase OS=Ne	N/A	N/A	0.609	0.171	0.58	1e-10
Q9ZTR1	334	Spermidine synthase 1 OS=	N/A	N/A	0.597	0.146	0.612	2e-10
Q96556	308	Spermidine synthase 1 OS=	N/A	N/A	0.731	0.194	0.531	2e-10
Q9ZUB3	334	Spermidine synthase 1 OS=	yes	N/A	0.597	0.146	0.591	3e-10
Q9ZTR0	342	Spermidine synthase 2 OS=	N/A	N/A	0.597	0.143	0.591	3e-10

>sp|P19623|SPEE_HUMAN Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 39/51 (76%)

Query: 26  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
           K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI   G   V
Sbjct: 57  KTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGV 107

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM). Has a strong preference for putrescine as substrate, and has very low activity towards 1,3-diaminopropane. Has extremely low activity towards spermidine.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 6

>sp|Q64674|SPEE_MOUSE Spermidine synthase OS=Mus musculus GN=Srm PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 39/51 (76%)

Query: 26  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
           K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI   G   V
Sbjct: 57  KTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGV 107

Catalyzes the production of spermidine from putrescine and decarboxylated S-adenosylmethionine (dcSAM). Has a strong preference for putrescine as substrate, and has very low activity towards 1,3-diaminopropane. Has extremely low activity towards spermidine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q12455|SPSY_YEAST Spermine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPE4 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 37/51 (72%)

Query: 26  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
           K +GT L+LDGI+QCTEFDEF+Y EMI  + + +H NPK+VLI   G   V
Sbjct: 52  KVYGTVLVLDGIVQCTEFDEFAYQEMITHIAMFAHSNPKRVLIIGGGDGGV 102

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q09741|SPEE_SCHPO Spermidine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC12C2.07c PE=3 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 7   KVRVLSYPNKPFYPSSS--NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 64
           KV+ + Y  K  Y        + +G  L+LDG IQ TE DEFSY EMIA L L SHPNPK
Sbjct: 31  KVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERDEFSYQEMIAHLALNSHPNPK 90

Query: 65  KVLIFTVGGSTV 76
           KVL+   G   V
Sbjct: 91  KVLVIGGGDGGV 102

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|O48660|SPDE_NICSY Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 13  YPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG 72
           Y N   + SS+    +G  L+LDG+IQ TE DE +Y EMIA LPLCS PNPKKVL+   G
Sbjct: 53  YQNVMVFQSST----YGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPKKVLVIGGG 108

Query: 73  GSTV 76
              V
Sbjct: 109 DGGV 112

Nicotiana sylvestris (taxid: 4096)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9Y8H7|SPEE_NEUCR Spermidine synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=spe-3 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 34/50 (68%)

Query: 27  EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
           + G  L+LD +IQCTE DEFSY EMI  L + SHPNPKKVL+   G   V
Sbjct: 51  DHGNVLVLDNVIQCTERDEFSYQEMITHLAMNSHPNPKKVLVIGGGDGGV 100

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9ZTR1|SPD1_PEA Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/49 (61%), Positives = 34/49 (69%)

Query: 28  FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
           +G  LILDG+IQ TE DE +Y EMI  LPLCS PNPKKVL+   G   V
Sbjct: 85  YGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGV 133

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q96556|SPD1_DATST Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 13  YPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG 72
           Y N   + SS+    +G  LILDG+IQ TE DE +Y EMI  LPLCS PNPKKVL+   G
Sbjct: 47  YQNVMVFQSST----YGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGG 102

Query: 73  GSTV 76
              V
Sbjct: 103 DGGV 106

Datura stramonium (taxid: 4076)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9ZUB3|SPD1_ARATH Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 34/49 (69%)

Query: 28  FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
           +G  L+LDG+IQ TE DE +Y EMI  LPLCS PNPKKVL+   G   V
Sbjct: 86  YGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGV 134

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q9ZTR0|SPD2_PEA Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 34/49 (69%)

Query: 28  FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
           +G  L+LDG+IQ TE DE +Y EMI  LPLCS PNPKKVL+   G   V
Sbjct: 93  YGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGV 141

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
156538693	288	PREDICTED: spermidine synthase-like isof	0.560	0.159	0.791	1e-13
354502302	311	PREDICTED: spermidine synthase-like [Cri	0.853	0.225	0.557	2e-13
397503020	278	PREDICTED: spermidine synthase [Pan pani	0.670	0.197	0.654	2e-13
110762382	293	PREDICTED: spermidine synthase [Apis mel	0.560	0.156	0.812	2e-13
380021423	293	PREDICTED: spermidine synthase-like [Api	0.573	0.160	0.795	2e-13
340723867	294	PREDICTED: spermidine synthase-like [Bom	0.597	0.166	0.764	2e-13
350422672	294	PREDICTED: spermidine synthase-like [Bom	0.597	0.166	0.764	2e-13
444728183	3780	Serine/threonine-protein kinase mTOR [Tu	0.560	0.012	0.729	3e-13
301774743	293	PREDICTED: spermidine synthase-like [Ail	0.621	0.174	0.686	3e-13
426240325	302	PREDICTED: spermidine synthase [Ovis ari	0.621	0.168	0.686	4e-13

>gi|156538693|ref|XP_001607780.1| PREDICTED: spermidine synthase-like isoform 1 [Nasonia vitripennis] gi|345491872|ref|XP_003426726.1| PREDICTED: spermidine synthase-like isoform 2 [Nasonia vitripennis] gi|345491874|ref|XP_003426727.1| PREDICTED: spermidine synthase-like isoform 3 [Nasonia vitripennis]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/48 (79%), Positives = 41/48 (85%), Gaps = 2/48 (4%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
          K +G AL+LDGIIQCTE DEFSY EMI+FLPLCSHPNPK VLI  VGG
Sbjct: 45 KSYGKALVLDGIIQCTEKDEFSYQEMISFLPLCSHPNPKTVLI--VGG 90

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|354502302|ref|XP_003513226.1| PREDICTED: spermidine synthase-like [Cricetulus griseus]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 44/70 (62%)

Query: 7   KVRVLSYPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKV 66
           K R L          S + K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KV
Sbjct: 47  KARALQPVRYDKEARSHSSKSYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKV 106

Query: 67  LIFTVGGSTV 76
           LI   G   V
Sbjct: 107 LIIGGGDGGV 116

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397503020|ref|XP_003822134.1| PREDICTED: spermidine synthase [Pan paniscus]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 41/55 (74%)

Query: 22 SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
          S+  K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI   G   V
Sbjct: 27 SARSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGV 81

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|110762382|ref|XP_001120306.1| PREDICTED: spermidine synthase [Apis mellifera]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/48 (81%), Positives = 39/48 (81%), Gaps = 2/48 (4%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
          K  G  LILDGIIQCTE DEFSY EMIAFLPLCSHPNPK VLI  VGG
Sbjct: 45 KSHGRTLILDGIIQCTERDEFSYQEMIAFLPLCSHPNPKTVLI--VGG 90

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021423|ref|XP_003694565.1| PREDICTED: spermidine synthase-like [Apis florea]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 39/49 (79%), Gaps = 2/49 (4%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGS 74
          K  G  LILDGIIQCTE DEFSY EMIAFLPLCSHPNPK VLI  VGG 
Sbjct: 45 KSHGRTLILDGIIQCTERDEFSYQEMIAFLPLCSHPNPKTVLI--VGGG 91

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723867|ref|XP_003400308.1| PREDICTED: spermidine synthase-like [Bombus terrestris]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/51 (76%), Positives = 40/51 (78%), Gaps = 2/51 (3%)

Query: 24 NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGS 74
          + K  G  LILDGIIQCTE DEFSY EMIAFLPLCSHPNPK VLI  VGG 
Sbjct: 44 DTKSHGRTLILDGIIQCTEKDEFSYQEMIAFLPLCSHPNPKTVLI--VGGG 92

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422672|ref|XP_003493245.1| PREDICTED: spermidine synthase-like [Bombus impatiens]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/51 (76%), Positives = 40/51 (78%), Gaps = 2/51 (3%)

Query: 24 NRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGS 74
          + K  G  LILDGIIQCTE DEFSY EMIAFLPLCSHPNPK VLI  VGG 
Sbjct: 44 DTKSHGRTLILDGIIQCTEKDEFSYQEMIAFLPLCSHPNPKTVLI--VGGG 92

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|444728183|gb|ELW68647.1| Serine/threonine-protein kinase mTOR [Tupaia chinensis]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/48 (72%), Positives = 40/48 (83%), Gaps = 2/48 (4%)

Query: 26   KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
            K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI  +GG
Sbjct: 3535 KTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLI--IGG 3580

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301774743|ref|XP_002922806.1| PREDICTED: spermidine synthase-like [Ailuropoda melanoleuca]

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 39/51 (76%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
          K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI   G   V
Sbjct: 48 KSYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGV 98

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426240325|ref|XP_004014060.1| PREDICTED: spermidine synthase [Ovis aries]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 39/51 (76%)

Query: 26  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
           K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI   G   V
Sbjct: 54  KSYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGV 104

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
UNIPROTKB|K7ESL0	119	SRM "Spermidine synthase" [Hom	0.731	0.504	0.609	4.2e-15
UNIPROTKB|E1BM12	302	SRM "Uncharacterized protein"	0.560	0.152	0.729	1.6e-14
UNIPROTKB|I3LPB8	302	SRM "Uncharacterized protein"	0.560	0.152	0.729	1.6e-14
UNIPROTKB|P19623	302	SRM "Spermidine synthase" [Hom	0.560	0.152	0.729	2.1e-14
MGI|MGI:102690	302	Srm "spermidine synthase" [Mus	0.560	0.152	0.729	2.1e-14
RGD|620796	302	Srm "spermidine synthase" [Rat	0.560	0.152	0.729	2.1e-14
FB|FBgn0037723	299	SpdS "Spermidine Synthase" [Dr	0.536	0.147	0.782	3.4e-14
UNIPROTKB|J9P2P6	247	SRM "Uncharacterized protein"	0.560	0.186	0.708	3.8e-14
ZFIN|ZDB-GENE-040426-1183	289	srm "spermidine synthase" [Dan	0.560	0.159	0.729	2.5e-13
ASPGD|ASPL0000062169	292	spdA [Emericella nidulans (tax	0.548	0.154	0.638	1.4e-11

UNIPROTKB|K7ESL0 SRM "Spermidine synthase" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 39/64 (60%), Positives = 46/64 (71%)

Query:    12 SYPNKPFYPS--SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIF 69
             S P +   P   S+  K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI 
Sbjct:    15 SPPQRTQVPDCHSARSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLI- 73

Query:    70 TVGG 73
              +GG
Sbjct:    74 -IGG 76

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|E1BM12 SRM "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 187 (70.9 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 35/48 (72%), Positives = 40/48 (83%)

Query:    26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
             K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI  +GG
Sbjct:    57 KSYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLI--IGG 102

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=IEA

UNIPROTKB|I3LPB8 SRM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 187 (70.9 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 35/48 (72%), Positives = 40/48 (83%)

Query:    26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
             K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI  +GG
Sbjct:    57 KSYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLI--IGG 102

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=IEA

UNIPROTKB|P19623 SRM "Spermidine synthase" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 35/48 (72%), Positives = 40/48 (83%)

Query:    26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
             K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI  +GG
Sbjct:    57 KTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLI--IGG 102

GO:0008295 "spermidine biosynthetic process" evidence=IEA;IDA

GO:0004766 "spermidine synthase activity" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006595 "polyamine metabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:102690 Srm "spermidine synthase" [Mus musculus (taxid:10090)]

 Score = 186 (70.5 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 35/48 (72%), Positives = 40/48 (83%)

Query:    26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
             K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI  +GG
Sbjct:    57 KTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLI--IGG 102

GO:0003824 "catalytic activity" evidence=IEA

GO:0004766 "spermidine synthase activity" evidence=ISO

GO:0008295 "spermidine biosynthetic process" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=ISO

RGD|620796 Srm "spermidine synthase" [Rattus norvegicus (taxid:10116)]

 Score = 186 (70.5 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 35/48 (72%), Positives = 40/48 (83%)

Query:    26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
             K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI  +GG
Sbjct:    57 KTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLI--IGG 102

GO:0004766 "spermidine synthase activity" evidence=ISO;IDA

GO:0008295 "spermidine biosynthetic process" evidence=ISO;IDA

GO:0042803 "protein homodimerization activity" evidence=ISO

FB|FBgn0037723 SpdS "Spermidine Synthase" [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 3.4e-14, P = 3.4e-14
 Identities = 36/46 (78%), Positives = 39/46 (84%)

Query:    28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
             +G  LILDGIIQCT  DEFSY EMI+FLPLC+HPNPKKVLI  VGG
Sbjct:    60 YGRCLILDGIIQCTARDEFSYQEMISFLPLCAHPNPKKVLI--VGG 103

GO:0004766 "spermidine synthase activity" evidence=ISS

GO:0008295 "spermidine biosynthetic process" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|J9P2P6 SRM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 34/48 (70%), Positives = 40/48 (83%)

Query:    26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
             K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHP+P+KVLI  +GG
Sbjct:     2 KSYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPDPRKVLI--IGG 47

GO:0016740 "transferase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1183 srm "spermidine synthase" [Danio rerio (taxid:7955)]

 Score = 176 (67.0 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 35/48 (72%), Positives = 38/48 (79%)

Query:    26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
             K +G  LILDG+IQCTE DEFSY EMIA LPLC HP PKKVLI  +GG
Sbjct:    45 KTYGNVLILDGVIQCTERDEFSYQEMIANLPLCCHPCPKKVLI--IGG 90

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

ASPGD|ASPL0000062169 spdA [Emericella nidulans (taxid:162425)]

 Score = 161 (61.7 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 30/47 (63%), Positives = 37/47 (78%)

Query:    27 EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
             ++GT L+LD +IQCTE DEFSY EMI  L + SHPNPKKVL+  +GG
Sbjct:    51 DYGTVLVLDNVIQCTERDEFSYQEMITHLAMNSHPNPKKVLV--IGG 95

GO:0016768 "spermine synthase activity" evidence=RCA

GO:0008295 "spermidine biosynthetic process" evidence=IMP

GO:0004766 "spermidine synthase activity" evidence=IEA;RCA

GO:0006525 "arginine metabolic process" evidence=RCA

GO:0097308 "cellular response to farnesol" evidence=IEP

GO:0005576 "extracellular region" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0015940 "pantothenate biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9MRW0	SPEE_CALBD	2, ., 5, ., 1, ., 1, 6	0.5581	0.5243	0.1546	yes	N/A
A9VSG3	SPEE_BACWK	2, ., 5, ., 1, ., 1, 6	0.5897	0.4756	0.1418	yes	N/A
B0K172	SPEE_THEPX	2, ., 5, ., 1, ., 1, 6	0.6170	0.5487	0.1624	yes	N/A
Q64674	SPEE_MOUSE	2, ., 5, ., 1, ., 1, 6	0.6862	0.6219	0.1688	yes	N/A
Q12455	SPSY_YEAST	2, ., 5, ., 1, ., 2, 2	0.5686	0.6219	0.17	yes	N/A
B0K9I5	SPEE_THEP3	2, ., 5, ., 1, ., 1, 6	0.6170	0.5487	0.1624	yes	N/A
Q814Q1	SPEE1_BACCR	2, ., 5, ., 1, ., 1, 6	0.6046	0.5243	0.1563	yes	N/A
Q8RA94	SPEE1_THETN	2, ., 5, ., 1, ., 1, 6	0.5957	0.5487	0.1624	yes	N/A
A5N219	SPEE_CLOK5	2, ., 5, ., 1, ., 1, 6	0.5490	0.6097	0.1818	yes	N/A
P70998	SPEE_BACSU	2, ., 5, ., 1, ., 1, 6	0.5384	0.4756	0.1413	yes	N/A
Q5WB31	SPEE_BACSK	2, ., 5, ., 1, ., 1, 6	0.5641	0.4756	0.1418	yes	N/A
B1I5Z0	SPEE_DESAP	2, ., 5, ., 1, ., 1, 6	0.5434	0.5365	0.16	yes	N/A
Q9ZUB3	SPD1_ARATH	2, ., 5, ., 1, ., 1, 6	0.5918	0.5975	0.1467	yes	N/A
A7GVB2	SPEE_BACCN	2, ., 5, ., 1, ., 1, 6	0.5897	0.4756	0.1418	yes	N/A
Q9K6B8	SPEE_BACHD	2, ., 5, ., 1, ., 1, 6	0.5897	0.4756	0.1418	yes	N/A
B9E5S1	SPEE_CLOK1	2, ., 5, ., 1, ., 1, 6	0.5490	0.6097	0.1818	yes	N/A
Q9XY92	SPEE_DICDI	2, ., 5, ., 1, ., 1, 6	0.625	0.4878	0.1408	yes	N/A
Q57761	SPEE_METJA	2, ., 5, ., 1, ., 1, 6	0.5384	0.6219	0.1740	yes	N/A
A3DDA0	SPEE_CLOTH	2, ., 5, ., 1, ., 1, 6	0.6041	0.5609	0.1672	yes	N/A
Q72X78	SPEE_BACC1	2, ., 5, ., 1, ., 1, 6	0.5897	0.4756	0.1418	yes	N/A
Q81JT0	SPEE1_BACAN	2, ., 5, ., 1, ., 1, 6	0.5897	0.4756	0.1418	yes	N/A
A5IJD3	SPEE_THEP1	2, ., 5, ., 1, ., 1, 6	0.5192	0.6219	0.1722	yes	N/A
P19623	SPEE_HUMAN	2, ., 5, ., 1, ., 1, 6	0.6862	0.6219	0.1688	yes	N/A
Q8EXA3	SPEE2_LEPIN	2, ., 5, ., 1, ., 1, 6	0.5294	0.6097	0.1785	yes	N/A
B9KAY3	SPEE_THENN	2, ., 5, ., 1, ., 1, 6	0.5192	0.6219	0.1722	yes	N/A
A4XKM9	SPEE_CALS8	2, ., 5, ., 1, ., 1, 6	0.5813	0.5243	0.1546	yes	N/A
O66473	SPEE1_AQUAE	2, ., 5, ., 1, ., 1, 6	0.5531	0.5487	0.1607	yes	N/A
Q9WZC2	SPEE_THEMA	2, ., 5, ., 1, ., 1, 6	0.5192	0.6219	0.1722	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	82
PLN02366	308	PLN02366, PLN02366, spermidine synthase	2e-21
pfam01564	240	pfam01564, Spermine_synth, Spermine/spermidine syn	4e-19
TIGR00417	271	TIGR00417, speE, spermidine synthase	4e-19
PRK00811	283	PRK00811, PRK00811, spermidine synthase; Provision	3e-18
COG0421	282	COG0421, SpeE, Spermidine synthase [Amino acid tra	4e-18
PLN02823	336	PLN02823, PLN02823, spermine synthase	8e-12
PRK00536	262	PRK00536, speE, spermidine synthase; Provisional	0.002

>gnl|CDD|215208 PLN02366, PLN02366, spermidine synthase

 Score = 84.3 bits (209), Expect = 2e-21
 Identities = 30/46 (65%), Positives = 35/46 (76%), Gaps = 2/46 (4%)

Query: 28  FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
           +G  L+LDG+IQ TE DE +Y EMI  LPLCS PNPKKVL+  VGG
Sbjct: 57  YGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLV--VGG 100

Length = 308

>gnl|CDD|216573 pfam01564, Spermine_synth, Spermine/spermidine synthase

 Score = 77.3 bits (191), Expect = 4e-19
 Identities = 33/48 (68%), Positives = 37/48 (77%), Gaps = 2/48 (4%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
          K FG  L+LDG +Q TE DEF Y EMIA +PLCSHPNPKKVLI  +GG
Sbjct: 39 KTFGKILVLDGRVQLTERDEFIYHEMIAHVPLCSHPNPKKVLI--IGG 84

Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyzes the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase. Length = 240

>gnl|CDD|188048 TIGR00417, speE, spermidine synthase

 Score = 77.9 bits (192), Expect = 4e-19
 Identities = 27/48 (56%), Positives = 35/48 (72%), Gaps = 2/48 (4%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
          + FG  L+LDG++Q TE DEF Y EMI  +PL +HPNPK VL+  +GG
Sbjct: 36 EAFGNVLVLDGVVQTTERDEFIYHEMITHVPLFTHPNPKHVLV--IGG 81

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM [Central intermediary metabolism, Polyamine biosynthesis]. Length = 271

>gnl|CDD|234843 PRK00811, PRK00811, spermidine synthase; Provisional

 Score = 75.6 bits (187), Expect = 3e-18
 Identities = 27/48 (56%), Positives = 33/48 (68%), Gaps = 2/48 (4%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
           EFG  L LDG +  TE DEF Y EM+  +PL +HPNPK+VLI  +GG
Sbjct: 40 PEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVLI--IGG 85

Length = 283

>gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]

 Score = 75.1 bits (185), Expect = 4e-18
 Identities = 28/48 (58%), Positives = 38/48 (79%), Gaps = 2/48 (4%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
          ++FG  L+LDG++Q TE DEF Y EM+A +PL +HPNPK+VLI  +GG
Sbjct: 40 EDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVLI--IGG 85

Length = 282

>gnl|CDD|178418 PLN02823, PLN02823, spermine synthase

 Score = 58.2 bits (141), Expect = 8e-12
 Identities = 26/51 (50%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 26  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GST 75
           K FG  LI+DG +Q  E DEF Y E +    L  HPNPK V I   G GST
Sbjct: 67  KPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFIMGGGEGST 117

Length = 336

>gnl|CDD|134311 PRK00536, speE, spermidine synthase; Provisional

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 49 SEMIAFLPLCSHPNPKKVLIF 69
          SE++A +  C+    K+VLI 
Sbjct: 59 SELLAHMGGCTKKELKEVLIV 79

Length = 262

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
PRK00536	262	speE spermidine synthase; Provisional	100.0
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.94
PLN02366	308	spermidine synthase	99.94
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.93
PRK01581	374	speE spermidine synthase; Validated	99.93
PLN02823	336	spermine synthase	99.93
PRK00811	283	spermidine synthase; Provisional	99.93
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.9
COG4262	508	Predicted spermidine synthase with an N-terminal m	99.9
KOG1562|consensus	337		99.85
PRK03612	521	spermidine synthase; Provisional	99.83
PRK04457	262	spermidine synthase; Provisional	97.9
KOG1562|consensus	337		97.56
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.98
PRK05562	223	precorrin-2 dehydrogenase; Provisional	91.74
KOG3851|consensus	446		89.58
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	88.06
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	87.34
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	84.77
PRK10637	457	cysG siroheme synthase; Provisional	84.59
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	82.45

>PRK00536 speE spermidine synthase; Provisional

Probab=100.00  E-value=4.6e-35  Score=217.60  Aligned_cols=72  Identities=18%  Similarity=0.071  Sum_probs=69.3

Q ss_pred             ccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           8 VRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         8 ~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      .+++++++|+||+| |++|+.||++|+|| .+|+|++|||+|||||||||||+||+|||||||||||||++||+
T Consensus        18 ~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REv   90 (262)
T PRK00536         18 EAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQL   90 (262)
T ss_pred             EEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHH
Confidence            47999999999999 99999999999999 66679999999999999999999999999999999999999997

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.94  E-value=2.8e-28  Score=178.18  Aligned_cols=73  Identities=38%  Similarity=0.574  Sum_probs=70.2

Q ss_pred             ccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           8 VRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         8 ~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      .+++++++|+||+| |++++.||++|+|||.+|++++||++|||+|+|+||+.|++||+|||||||+|+++||+
T Consensus        21 ~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~el   94 (246)
T PF01564_consen   21 EEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTAREL   94 (246)
T ss_dssp             EEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHH
T ss_pred             EEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhh
Confidence            47899999999999 99999999999999999999999999999999999999999999999999999999986

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PLN02366 spermidine synthase

Probab=99.94  E-value=1.6e-27  Score=179.79  Aligned_cols=74  Identities=43%  Similarity=0.635  Sum_probs=71.7

Q ss_pred             cccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           7 KVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         7 ~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      -.+++++++|+||+| |++++.+|++|+|||.+|+|+.||++|||||+|+||+.|++|+||||||||+|+++||+
T Consensus        35 v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rel  109 (308)
T PLN02366         35 VEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREI  109 (308)
T ss_pred             EeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHH
Confidence            357999999999999 99999999999999999999999999999999999999999999999999999999986

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.93  E-value=2.5e-27  Score=177.59  Aligned_cols=74  Identities=41%  Similarity=0.631  Sum_probs=71.6

Q ss_pred             cccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           7 KVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         7 ~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      -.+++++++|+||+| +++++.||++|+|||..|++++|||+||||++|+||++||+||+|||||||||+++||+
T Consensus        20 v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRev   94 (282)
T COG0421          20 VERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREV   94 (282)
T ss_pred             eeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEEEECCCccHHHHHH
Confidence            357899999999999 99999999999999999999999999999999999999999999999999999999996

>PRK01581 speE spermidine synthase; Validated

Probab=99.93  E-value=2.6e-27  Score=183.69  Aligned_cols=71  Identities=21%  Similarity=0.219  Sum_probs=68.2

Q ss_pred             ccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           8 VRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         8 ~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      .++|++++|+||+| |+++..|  .|+|||.+|+|++||++|||+||||||++|++|++|||||||+|+++||+
T Consensus        97 ~~vl~~~~S~yQ~I~I~et~~~--~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrel  168 (374)
T PRK01581         97 HTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREV  168 (374)
T ss_pred             cCEEEecCCCCceEEEEEcCCE--EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHH
Confidence            48999999999999 9999977  69999999999999999999999999999999999999999999999886

>PLN02823 spermine synthase

Probab=99.93  E-value=7.1e-27  Score=178.24  Aligned_cols=75  Identities=35%  Similarity=0.502  Sum_probs=72.6

Q ss_pred             CcccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           6 KKVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         6 ~~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      +..++|++++|+||+| |++++.+|++|+|||.+|+++.||++|||+|+||||+.|++||+|||||||+|+++||+
T Consensus        46 ~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~  121 (336)
T PLN02823         46 AVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAREV  121 (336)
T ss_pred             EeccEEEeccCCCeEEEEEECCCCceEEEECCccccccchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHH
Confidence            4679999999999999 99999999999999999999999999999999999999999999999999999999985

>PRK00811 spermidine synthase; Provisional

Probab=99.93  E-value=1.1e-26  Score=171.96  Aligned_cols=75  Identities=40%  Similarity=0.605  Sum_probs=72.4

Q ss_pred             CcccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           6 KKVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         6 ~~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      +..++|++++|+||+| |++++.+|++|+|||.+|++++||++|||+|+|+||++|++|++||+||||+|+++||+
T Consensus        19 ~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~~~   94 (283)
T PRK00811         19 RVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVLIIGGGDGGTLREV   94 (283)
T ss_pred             eeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEEEEecCchHHHHHH
Confidence            4578999999999999 99999999999999999999999999999999999999999999999999999999986

>TIGR00417 speE spermidine synthase

Probab=99.90  E-value=2.7e-24  Score=157.54  Aligned_cols=73  Identities=44%  Similarity=0.672  Sum_probs=70.8

Q ss_pred             ccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           8 VRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         8 ~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      +++|++++|+||+| |++++.+|++|+|||.+|+++.||++|||||+|+|++.|++|++||+||+|+|++++|+
T Consensus        17 ~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~~l   90 (270)
T TIGR00417        17 KKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIGGGDGGVLREV   90 (270)
T ss_pred             eeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEcCCchHHHHHH
Confidence            68999999999999 99999999999999999999999999999999999999999999999999999988875

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=99.90  E-value=2.4e-24  Score=169.31  Aligned_cols=76  Identities=21%  Similarity=0.286  Sum_probs=73.6

Q ss_pred             CCcccEEEccCCCCeeEEEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           5 DKKVRVLSYPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         5 ~~~~~vl~~~~s~yQ~iv~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      .|.+++|+.+|||||+||+++..-.+.|+|||.+|||++||+.|||.|||||+.+-+..++|||+|||||.++||+
T Consensus       232 lygdeIIh~~qspYQ~iVvTr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRel  307 (508)
T COG4262         232 LYGDEIIHAIQSPYQRIVVTRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALREL  307 (508)
T ss_pred             hhcCceeeeccCccceEEEEEecCceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHH
Confidence            5889999999999999999998889999999999999999999999999999999999999999999999999997

>KOG1562|consensus

Probab=99.85  E-value=9.8e-23  Score=155.71  Aligned_cols=75  Identities=45%  Similarity=0.652  Sum_probs=72.5

Q ss_pred             CcccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           6 KKVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         6 ~~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      +...+++.++|.||.+ |+++..+|+.|+|||..|++++||+.|.||++|.|+|+|+|||+|||||||||+++||+
T Consensus        64 kVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrev  139 (337)
T KOG1562|consen   64 KVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREV  139 (337)
T ss_pred             EeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccccccCCCCCeEEEEecCCccceeee
Confidence            4567899999999999 99999999999999999999999999999999999999999999999999999999997

>PRK03612 spermidine synthase; Provisional

Probab=99.83  E-value=2.9e-21  Score=153.29  Aligned_cols=75  Identities=21%  Similarity=0.355  Sum_probs=70.6

Q ss_pred             CcccEEEccCCCCeeE-EEecCC-CC--eEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           6 KKVRVLSYPNKPFYPS-SSNRKE-FG--TALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         6 ~~~~vl~~~~s~yQ~i-v~~~~~-~G--~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      +.++++++++|+||+| |++++. +|  +.|++||.+|+++.||+.|||+++||||+.|++|+|||+||||+|.++||+
T Consensus       237 ~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL~IG~G~G~~~~~l  315 (521)
T PRK03612        237 YGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVLVLGGGDGLALREV  315 (521)
T ss_pred             ccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHH
Confidence            5778999999999999 888877 47  999999999999999999999999999999999999999999999999885

>PRK04457 spermidine synthase; Provisional

Probab=97.90  E-value=7.4e-06  Score=60.39  Aligned_cols=70  Identities=21%  Similarity=0.243  Sum_probs=51.2

Q ss_pred             cEEEccCCCCeeE-EEecCCCCeEEEEcCc-eeeeccc------cchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           9 RVLSYPNKPFYPS-SSNRKEFGTALILDGI-IQCTEFD------EFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         9 ~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~-~q~se~d------e~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      +-+...++.|++| |++... .+.|.+|+. .|+.-.-      .+.|+++|.- .+..+++|++||+||+|.|..++.+
T Consensus         7 ~~~~~~~~~~~~i~v~e~~~-~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~-~l~~~~~~~~vL~IG~G~G~l~~~l   84 (262)
T PRK04457          7 RRLRPAKAGFPEVGVSEEGG-VRSLHLGSDTVQSSMRIDDPSELELAYTRAMMG-FLLFNPRPQHILQIGLGGGSLAKFI   84 (262)
T ss_pred             hhhccccccCCCcEEEecCC-EEEEEECCCcceeeeecCCcccccCHHHHHHHH-HHhcCCCCCEEEEECCCHhHHHHHH
Confidence            3455678899999 888877 678888884 5654322      3468887753 4555789999999999999877643

>KOG1562|consensus

Probab=97.56  E-value=2.8e-05  Score=60.30  Aligned_cols=68  Identities=18%  Similarity=0.062  Sum_probs=57.8

Q ss_pred             CCcccEEEccCCCCeeEEEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeee
Q psy4594           5 DKKVRVLSYPNKPFYPSSSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYS   79 (82)
Q Consensus         5 ~~~~~vl~~~~s~yQ~iv~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rE   79 (82)
                      -+++.||...+++||++++..+.+++++.+|...+..+.+ ..|.+.|+-     .-+.++|.|+|| ||+..-|
T Consensus       122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~s-k~y~p~la~-----gy~~~~v~l~iG-DG~~fl~  189 (337)
T KOG1562|consen  122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESS-KQYLPTLAC-----GYEGKKVKLLIG-DGFLFLE  189 (337)
T ss_pred             CCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHH-HHHhHHHhc-----ccCCCceEEEec-cHHHHHH
Confidence            4688999999999999977779999999999999999999 578776554     267789999999 9986544

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.98  E-value=0.059  Score=37.08  Aligned_cols=25  Identities=28%  Similarity=0.316  Sum_probs=20.6

Q ss_pred             hhcccccccCCCCCEEEEEeCCcce
Q psy4594          51 MIAFLPLCSHPNPKKVLIFTVGGST   75 (82)
Q Consensus        51 ~lvh~~~~~h~~pk~VLIiGGGDGg   75 (82)
                      ||.+.|++..-+.++|||+|||.=+
T Consensus         1 ~~~~~P~~l~l~~~~vlVvGGG~va   25 (157)
T PRK06719          1 MYNMYPLMFNLHNKVVVIIGGGKIA   25 (157)
T ss_pred             CCcccceEEEcCCCEEEEECCCHHH
Confidence            4567888888899999999999643

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=91.74  E-value=0.085  Score=38.84  Aligned_cols=33  Identities=27%  Similarity=0.251  Sum_probs=26.4

Q ss_pred             cccchhhhhhcccccccCCCCCEEEEEeCCcce
Q psy4594          43 FDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGST   75 (82)
Q Consensus        43 ~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg   75 (82)
                      .-+.+|+|-.=+.|+...-+.++|||||||.=+
T Consensus         5 ~~~~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA   37 (223)
T PRK05562          5 NKEDIYNEENKYMFISLLSNKIKVLIIGGGKAA   37 (223)
T ss_pred             hhhHHhhccCCEeeeEEECCCCEEEEECCCHHH
Confidence            345678877788888888889999999999744

>KOG3851|consensus

Probab=89.58  E-value=0.19  Score=40.29  Aligned_cols=31  Identities=23%  Similarity=0.234  Sum_probs=24.7

Q ss_pred             cccchhhhhhcccccccCCCCCEEEEEeCCcceee
Q psy4594          43 FDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQ   77 (82)
Q Consensus        43 ~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~   77 (82)
                      -..+.|+.+++|    ..++.-+|||+|||.||+.
T Consensus        23 ~~~~~~~t~~~~----~~~~h~kvLVvGGGsgGi~   53 (446)
T KOG3851|consen   23 TGPFQLATMLAR----FARKHFKVLVVGGGSGGIG   53 (446)
T ss_pred             cccEeehhhhhh----hcccceEEEEEcCCcchhH
Confidence            345778888888    5567779999999999864

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=88.06  E-value=0.27  Score=31.29  Aligned_cols=14  Identities=36%  Similarity=0.565  Sum_probs=10.1

Q ss_pred             CCCCEEEEEeCCcc
Q psy4594          61 PNPKKVLIFTVGGS   74 (82)
Q Consensus        61 ~~pk~VLIiGGGDG   74 (82)
                      ..||+|||||+..|
T Consensus        37 ~GpK~VLViGaStG   50 (78)
T PF12242_consen   37 NGPKKVLVIGASTG   50 (78)
T ss_dssp             TS-SEEEEES-SSH
T ss_pred             CCCceEEEEecCCc
Confidence            46899999999766

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=87.34  E-value=0.33  Score=35.24  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=16.5

Q ss_pred             ccccccCCCCCEEEEEeCCcce
Q psy4594          54 FLPLCSHPNPKKVLIFTVGGST   75 (82)
Q Consensus        54 h~~~~~h~~pk~VLIiGGGDGg   75 (82)
                      ..|+..-=+.|+|||+|||+-+
T Consensus         3 ~lPl~~~l~~k~VlvvGgG~va   24 (210)
T COG1648           3 YLPLFLDLEGKKVLVVGGGSVA   24 (210)
T ss_pred             ccceEEEcCCCEEEEECCCHHH
Confidence            3455555678999999999854

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=84.77  E-value=0.51  Score=33.61  Aligned_cols=21  Identities=29%  Similarity=0.313  Sum_probs=16.3

Q ss_pred             ccccCCCCCEEEEEeCCccee
Q psy4594          56 PLCSHPNPKKVLIFTVGGSTV   76 (82)
Q Consensus        56 ~~~~h~~pk~VLIiGGGDGg~   76 (82)
                      |++..-+.|+|||||||+=+.
T Consensus         3 Pl~l~l~~k~vLVIGgG~va~   23 (202)
T PRK06718          3 PLMIDLSNKRVVIVGGGKVAG   23 (202)
T ss_pred             ceEEEcCCCEEEEECCCHHHH
Confidence            555566889999999997543

>PRK10637 cysG siroheme synthase; Provisional

Probab=84.59  E-value=0.52  Score=37.32  Aligned_cols=22  Identities=18%  Similarity=0.353  Sum_probs=18.3

Q ss_pred             cccccccCCCCCEEEEEeCCcc
Q psy4594          53 AFLPLCSHPNPKKVLIFTVGGS   74 (82)
Q Consensus        53 vh~~~~~h~~pk~VLIiGGGDG   74 (82)
                      .+.|++..-+.|+|||+|||.=
T Consensus         2 ~~~P~~~~l~~~~vlvvGgG~v   23 (457)
T PRK10637          2 DHLPIFCQLRDRDCLLVGGGDV   23 (457)
T ss_pred             CeeceEEEcCCCEEEEECCCHH
Confidence            4567877788999999999973

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=82.45  E-value=0.79  Score=32.76  Aligned_cols=20  Identities=20%  Similarity=0.380  Sum_probs=14.7

Q ss_pred             ccccCCCCCEEEEEeCCcce
Q psy4594          56 PLCSHPNPKKVLIFTVGGST   75 (82)
Q Consensus        56 ~~~~h~~pk~VLIiGGGDGg   75 (82)
                      |++..-+.|+|||||||.=+
T Consensus         2 P~~l~l~gk~vlVvGgG~va   21 (205)
T TIGR01470         2 PVFANLEGRAVLVVGGGDVA   21 (205)
T ss_pred             CeEEEcCCCeEEEECcCHHH
Confidence            44445567899999999643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	82
2o05_A	304	Human Spermidine Synthase Length = 304		1e-15
3rw9_A	304	Crystal Structure Of Human Spermidine Synthase In C		1e-15
2b2c_A	314	Cloning, Expression, Characterisation And Three- Di		6e-11
1xj5_A	334	X-Ray Structure Of Spermidine Synthase From Arabido		1e-10
1jq3_A	296	Crystal Structure Of Spermidine Synthase In Complex		1e-08
3bwb_A	304	Crystal Structure Of The Apo Form Of Spermidine Syn		3e-08
1iy9_A	275	Crystal Structure Of Spermidine Synthase Length = 2		4e-08
3o4f_A	294	Crystal Structure Of Spermidine Synthase From E. Co		6e-07
3anx_A	314	Crystal Structure Of TriamineAGMATINE AMINOPROPYLTR		3e-06
1uir_A	314	Crystal Structure Of Polyamine Aminopropyltransfeas		4e-06
2pwp_A	282	Crystal Structure Of Spermidine Synthase From Plasm		1e-05
2hte_A	283	The Crystal Structure Of Spermidine Synthase From P		1e-05
2pss_A	321	The Structure Of Plasmodium Falciparum Spermidine S		1e-05
1mjf_A	281	Putative Spermidine Synthetase From Pyrococcus Furi		4e-04

>pdb|2O05|A Chain A, Human Spermidine Synthase Length = 304

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 39/51 (76%)
Query: 26  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
           K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI   G   V
Sbjct: 59  KTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGV 109

>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex With Decarboxylated S-Adenosylhomocysteine Length = 304

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 39/51 (76%)
Query: 26  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
           K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI   G   V
Sbjct: 59  KTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGV 109

>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three- Dimensional Structure Determination Of The Caenorhabditis Elegans Spermidine Synthase Length = 314

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 33/40 (82%)
Query: 28  FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVL 67
           +G  L+LDGI+Q TE DEFSY EM+A LP+ +HP+PK+VL
Sbjct: 74  YGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVL 113

>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis Thaliana Gene At1g23820 Length = 334

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/49 (57%), Positives = 33/49 (67%)
Query: 28  FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
           +G  L+LDG+IQ TE DE +Y E I  LPLCS PNPKKVL+   G   V
Sbjct: 86  YGKVLVLDGVIQLTERDECAYQEXITHLPLCSIPNPKKVLVIGGGDGGV 134

>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With Transition State Analogue Adodato Length = 296

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 27  EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQ 77
           + G    LDGI   TE DEF Y EM+A +P+  HPNPKKVLI   G G T++
Sbjct: 55  DLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLR 106

>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase From Trypanosoma Cruzi At 2.5 A Resolution Length = 304

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 22  SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
           S  +  +GT   LDG IQ T++DEF Y E++    LCSHP P++VLI  +GG
Sbjct: 55  SDPKGPWGTVXALDGCIQVTDYDEFVYHEVLGHTSLCSHPKPERVLI--IGG 104

>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase Length = 275

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 64
          +EFG  L LDG++  +E DEF Y EM+A +PL +HPNP+
Sbjct: 39 EEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPE 77

>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli Length = 294

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
          FG  + LDG++Q TE DEF Y EM+  +PL +H + K VLI  +GG
Sbjct: 49 FGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLI--IGG 92

>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus, Complexed With Mta Length = 314

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
          K FG  LILD  +Q TE DE+ Y E +    + +HP PK+VLI  VGG
Sbjct: 41 KGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLI--VGG 86

>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From Thermus Thermophilus Length = 314

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
          K FG  LILD  +Q TE DE+ Y E +    + +HP PK+VLI  VGG
Sbjct: 41 KGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLI--VGG 86

>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium Falciparum In Complex With Spermidine Length = 282

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 64
          +G  L+LDG+IQ TE DEF+Y EM+  +P+     PK
Sbjct: 43 YGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPK 79

>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P. Falciparum In Complex With 5'-Methylthioadenosine Length = 283

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 64
          +G  L+LDG+IQ TE DEF+Y EM+  +P+     PK
Sbjct: 44 YGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPK 80

>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase In Its Apo- Form Length = 321

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 28  FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPK 64
           +G  L+LDG+IQ TE DEF+Y EM+  +P+     PK
Sbjct: 82  YGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPK 118

>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus Pfu- 132382 Length = 281

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 28 FGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQ 77
          FG  L LDG +Q     E SY E +    + +HP PK+VL+   G G TV+
Sbjct: 41 FGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVR 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	3e-22
2i7c_A	283	Spermidine synthase; transferase, structural genom	3e-22
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	4e-22
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	5e-22
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	6e-22
2pt6_A	321	Spermidine synthase; transferase, structural genom	6e-22
2o07_A	304	Spermidine synthase; structural genomics, structur	6e-22
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	7e-22
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	2e-21
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	2e-21
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	2e-21
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	6e-16
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	7e-15
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	7e-05

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Length = 334

 Score = 86.3 bits (214), Expect = 3e-22
 Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 2/48 (4%)

Query: 26  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
             +G  L+LDG+IQ TE DE +Y EMI  LPLCS PNPKKVL+  +GG
Sbjct: 84  ATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLV--IGG 129

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* Length = 283

 Score = 85.4 bits (212), Expect = 3e-22
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
            +G  L+LDG+IQ TE DEF+Y EM+  +P+     PK VL+  VGG
Sbjct: 42 TTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPKNVLV--VGG 87

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Length = 275

 Score = 85.4 bits (212), Expect = 4e-22
 Identities = 26/48 (54%), Positives = 35/48 (72%), Gaps = 2/48 (4%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
          +EFG  L LDG++  +E DEF Y EM+A +PL +HPNP+ VL+  VGG
Sbjct: 39 EEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLV--VGG 84

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Length = 314

 Score = 85.5 bits (212), Expect = 5e-22
 Identities = 28/48 (58%), Positives = 37/48 (77%), Gaps = 2/48 (4%)

Query: 26  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
             +G  L+LDGI+Q TE DEFSY EM+A LP+ +HP+PK+VLI  +GG
Sbjct: 72  TTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLI--IGG 117

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* Length = 321

 Score = 85.5 bits (212), Expect = 6e-22
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 26  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
             +G  L+LDG+IQ TE DEF+Y EM+  +P+     PK VL+  VGG
Sbjct: 80  TTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPKNVLV--VGG 125

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* Length = 304

 Score = 85.0 bits (211), Expect = 6e-22
 Identities = 35/48 (72%), Positives = 40/48 (83%), Gaps = 2/48 (4%)

Query: 26  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
           K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI  +GG
Sbjct: 59  KTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLI--IGG 104

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Length = 296

 Score = 84.6 bits (210), Expect = 7e-22
 Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
           + G    LDGI   TE DEF Y EM+A +P+  HPNPKKVLI  +GG
Sbjct: 54 PDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLI--IGG 99

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Length = 281

 Score = 83.5 bits (207), Expect = 2e-21
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 25 RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
           + FG  L LDG +Q     E SY E +    + +HP PK+VL+  +GG
Sbjct: 38 TEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLV--IGG 84

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* Length = 314

 Score = 83.9 bits (208), Expect = 2e-21
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
          K FG  LILD  +Q TE DE+ Y E +    + +HP PK+VLI  VGG
Sbjct: 41 KGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLI--VGG 86

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* Length = 304

 Score = 83.6 bits (207), Expect = 2e-21
 Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 22  SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
           S  +  +GT + LDG IQ T++DEF Y E++    LCSHP P++VLI  +GG
Sbjct: 55  SDPKGPWGTVMALDGCIQVTDYDEFVYHEVLGHTSLCSHPKPERVLI--IGG 104

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A Length = 262

 Score = 65.9 bits (161), Expect = 7e-15
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
          K+FG   +L+  +          SE++A +  C+    K+VLI  V G
Sbjct: 37 KDFGEIAMLNRQLLFKN-FLHIESELLAHMGGCTKKELKEVLI--VDG 81

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Length = 317

 Score = 38.0 bits (88), Expect = 7e-05
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 9/57 (15%)

Query: 26 KEFGTALILDGIIQCT------EFDEFSYSEMIAFLPLC---SHPNPKKVLIFTVGG 73
             G  + ++G+          +  EF Y   IA        +H +  K+ I  +GG
Sbjct: 42 TTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAFIDAHQDASKLRITHLGG 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.97
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	99.94
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.9
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.89
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.85
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.85
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.85
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.83
2o07_A	304	Spermidine synthase; structural genomics, structur	99.82
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.82
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.82
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.81
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.8
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.79
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.79
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.46
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	90.06
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	85.75
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	85.2

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.97  E-value=9.8e-33  Score=206.39  Aligned_cols=73  Identities=33%  Similarity=0.471  Sum_probs=68.6

Q ss_pred             ccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           8 VRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         8 ~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      +++|++++|+||+| |++++.||++|+|||.+|+||+|||+|||||+|+||++||+||||||||||||+++||+
T Consensus        28 ~~vl~~~~S~yQ~i~v~~s~~~G~~L~LDg~~q~te~De~~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~rev  101 (294)
T 3o4f_A           28 DNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREV  101 (294)
T ss_dssp             SEEEEEEC---CCEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHH
T ss_pred             eeEEEeccCCCceEEEEEcCCcceEEEECCchhhccccHHHHHHHHHHHHHhhCCCCCeEEEECCCchHHHHHH
Confidence            58999999999999 99999999999999999999999999999999999999999999999999999999996

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=99.94  E-value=5.3e-28  Score=186.44  Aligned_cols=71  Identities=25%  Similarity=0.314  Sum_probs=67.6

Q ss_pred             ccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           8 VRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         8 ~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      ++||++++|+||+| |++++.||++|+|||.+|+||+| +.|||||+|+||+.| +||||||||||||+++||+
T Consensus       152 ~~vl~~~~S~yQ~I~V~es~~~Gr~L~LDG~~Q~te~D-~~Y~e~l~h~~l~~~-~pkrVLIIGgGdG~~~rev  223 (381)
T 3c6k_A          152 DEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAIMGSGKEDY-TGKDVLILGGGDGGILCEI  223 (381)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTC-HHHHHHHTTTTCCCC-TTCEEEEEECTTCHHHHHH
T ss_pred             EEEEEeCCCCCceEEEEEcCCcceEEEECCceeeeCCh-HHHHHHHHHHHhhcC-CCCeEEEECCCcHHHHHHH
Confidence            68999999999999 99999999999999999999999 689999999999876 4899999999999999996

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.85  E-value=1.7e-22  Score=146.21  Aligned_cols=74  Identities=18%  Similarity=0.065  Sum_probs=70.6

Q ss_pred             CcccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           6 KKVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         6 ~~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      +..+++++++|+||+| |++++.+|++|+|||. |+++.|++.|||+++|+|++.|++|++||+||+|+|++++|+
T Consensus        16 ~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~-q~~~~d~~~y~e~l~~~~~~~~~~~~~VL~iG~G~G~~~~~l   90 (262)
T 2cmg_A           16 TIEAKLLDVRSEHNILEIFKSKDFGEIAMLNRQ-LLFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQL   90 (262)
T ss_dssp             ECSEEEEEEECSSCEEEEEEETTTEEEEEETTE-EEEGGGTHHHHHHHHHHHHTTSSCCCEEEEESSCCHHHHHHH
T ss_pred             EEeeEEEeeECCCceEEEEECCCccEEEEEcCc-ccccchHHHHHHHHHHHhhhcCCCCCEEEEEeCCcCHHHHHH
Confidence            3568999999999999 9999999999999999 999999999999999999999999999999999999998875

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.85  E-value=2.5e-22  Score=145.37  Aligned_cols=74  Identities=36%  Similarity=0.606  Sum_probs=70.8

Q ss_pred             cccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           7 KVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         7 ~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      ..++|++++|+||+| |++++.+|+.|++||.+|++++||+.|||+|+|+|++.|++|++||+||+|+|.+++|+
T Consensus        19 ~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~q~~~~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l   93 (275)
T 1iy9_A           19 VNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREI   93 (275)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEEESCTTCHHHHHH
T ss_pred             eeeEEEEEECCCceEEEEEcCCCCEEEEECCEEeecccchhHHHHHHHHHHHhhCCCCCEEEEECCchHHHHHHH
Confidence            467899999999999 99999999999999999999999999999999999999999999999999999999875

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.85  E-value=4e-22  Score=144.56  Aligned_cols=74  Identities=30%  Similarity=0.526  Sum_probs=71.0

Q ss_pred             cccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           7 KVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         7 ~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      ..+++++++|+||+| |++++.+|++|+|||.+|+++.||+.|||||+|+|++.|++|++||+||+|+|++++|+
T Consensus        22 ~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~Y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l   96 (283)
T 2i7c_A           22 IKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIREL   96 (283)
T ss_dssp             EEEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHH
T ss_pred             cccEEEEEECCCccEEEEEcCCCCEEEEECCEeeecccchhhHHHHHHHHHHhcCCCCCeEEEEeCCcCHHHHHH
Confidence            468999999999999 99999999999999999999999999999999999999999999999999999999876

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.83  E-value=1.4e-21  Score=143.68  Aligned_cols=75  Identities=35%  Similarity=0.518  Sum_probs=71.5

Q ss_pred             CcccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           6 KKVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         6 ~~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      +..++|++++|+||+| |++++.+|++|+|||.+|+++.|++.|||+|+|+|++.|+++++||+||+|+|.+++++
T Consensus        20 ~~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~Y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l   95 (314)
T 1uir_A           20 RMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREV   95 (314)
T ss_dssp             ECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHH
T ss_pred             ecceEEEEEECCCCCEEEEEcCCCcEEEEECCEEeeeecchhHHHHHHHHHHHhcCCCCCeEEEEcCCcCHHHHHH
Confidence            3468999999999999 99999999999999999999999999999999999999999999999999999998875

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.82  E-value=3.8e-21  Score=141.43  Aligned_cols=73  Identities=49%  Similarity=0.785  Sum_probs=70.4

Q ss_pred             ccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           8 VRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         8 ~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      ++++++++|+||+| |++++.+|++|+|||.+|++++||+.|||+|+|++++.++++++||+||+|+|.+++|+
T Consensus        40 ~~~l~~~~s~~q~i~v~~~~~~g~~L~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l  113 (304)
T 2o07_A           40 EQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREV  113 (304)
T ss_dssp             EEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHH
T ss_pred             ccEEEEEECCCcEEEEEEcCCCceEEEECCEEEeecccchHHHHHHHHHHHhhCCCCCEEEEECCCchHHHHHH
Confidence            57899999999999 99999999999999999999999999999999999999999999999999999998876

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.82  E-value=5.7e-21  Score=138.15  Aligned_cols=75  Identities=25%  Similarity=0.369  Sum_probs=71.1

Q ss_pred             CcccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           6 KKVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         6 ~~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      +..+++++++|+||+| |++++.+|+.|++||.+|++++|++.|||+|+|+|++.++++++||+||+|+|.+++++
T Consensus        18 ~~~~~l~~~~s~~~~i~v~~~~~~g~~L~ldg~~q~~~~d~~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l   93 (281)
T 1mjf_A           18 KIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREV   93 (281)
T ss_dssp             CEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTTHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHH
T ss_pred             eeccEEEEeeCCCccEEEEECCCccEEEEECCEeeeccccchHHHHHHHHHHHhhCCCCCeEEEEcCCcCHHHHHH
Confidence            3468999999999999 99999999999999999999999999999999999999999999999999999988875

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.82  E-value=4.3e-21  Score=142.30  Aligned_cols=74  Identities=39%  Similarity=0.651  Sum_probs=70.8

Q ss_pred             cccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           7 KVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         7 ~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      ..+++++++|+||+| |++++.+|+.|+|||.+|+++.|++.|||+|+|+|++.|+++++||+||+|+|.+++++
T Consensus        52 ~~~vl~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VLdIG~G~G~~~~~l  126 (314)
T 2b2c_A           52 VKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGILREV  126 (314)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHH
T ss_pred             cccEEEEEECCCCCEEEEEcCCCCEEEEECCEeecCCcchhHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHH
Confidence            468999999999999 99999999999999999999999999999999999999999999999999999998875

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.81  E-value=8.1e-21  Score=138.63  Aligned_cols=75  Identities=37%  Similarity=0.519  Sum_probs=71.1

Q ss_pred             CcccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           6 KKVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         6 ~~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      +..++|++++|+||+| |++++.+|+.|++||.+|+++.|++.|||+|+|+|++.|+++++||+||+|+|++++++
T Consensus        33 ~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l  108 (296)
T 1inl_A           33 KMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREV  108 (296)
T ss_dssp             ECSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHH
T ss_pred             ecccEEEEEECCCccEEEEEcCCCcEEEEECCEEeecccchhHHHHHHhHHHHhcCCCCCEEEEEcCCcCHHHHHH
Confidence            3568999999999999 99999999999999999999999999999999999999999999999999999998875

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.80  E-value=2.5e-20  Score=139.34  Aligned_cols=74  Identities=42%  Similarity=0.626  Sum_probs=70.9

Q ss_pred             cccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           7 KVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         7 ~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      ..++|++++||||+| |++++.+|+.|+|||.+|+++.|++.|||+|+|++++.++++++||+||+|+|.+++++
T Consensus        64 v~~vl~~~~s~~q~I~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~L~~l~l~~~~~~~~VLdIG~G~G~~a~~l  138 (334)
T 1xj5_A           64 VEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREV  138 (334)
T ss_dssp             EEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHH
T ss_pred             eeeEEEEeecCCeEEEEEEcCCCCeEEEECCEeecCcCcchHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHH
Confidence            468999999999999 99999999999999999999999999999999999999999999999999999988875

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.79  E-value=3.5e-20  Score=135.46  Aligned_cols=74  Identities=36%  Similarity=0.596  Sum_probs=70.4

Q ss_pred             cccEEEccCCCCeeE-EEecC---CCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           7 KVRVLSYPNKPFYPS-SSNRK---EFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         7 ~~~vl~~~~s~yQ~i-v~~~~---~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      ..+++++.+|+||+| |++++   .+|++|++||.+|+++.|++.|||+|+|++++.++++++||+||+|+|.+++++
T Consensus        36 ~~~~l~~~~s~~q~i~v~~~~p~g~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l  113 (304)
T 3bwc_A           36 VEKVLYDAPTKFQHLTIFESDPKGPWGTVMALDGCIQVTDYDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREV  113 (304)
T ss_dssp             EEEEEEEEECSSSEEEEEEECTTSSCCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHH
T ss_pred             cccEEEEeECCCCCEEEEEecCCCccceEEEECCeeeeecccchHHHHHHhhhhhhcCCCCCeEEEEcCCCCHHHHHH
Confidence            468899999999999 99998   899999999999999999999999999999999999999999999999998875

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.79  E-value=3.1e-20  Score=137.46  Aligned_cols=75  Identities=31%  Similarity=0.534  Sum_probs=70.9

Q ss_pred             CcccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           6 KKVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         6 ~~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      +..+++++++||||+| +++++.+|+.|++||.+|+++.|++.|||+|+|+|++.++++++||+||+|+|.+++++
T Consensus        59 ~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l  134 (321)
T 2pt6_A           59 KIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIREL  134 (321)
T ss_dssp             EEEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHH
T ss_pred             ecccEEEEEECCCceEEEEEcCCCcEEEEECCEeeeCcccchHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHH
Confidence            3568999999999999 99999999999999999999999999999999999999999999999999999998875

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.46  E-value=8.4e-15  Score=109.95  Aligned_cols=63  Identities=17%  Similarity=0.200  Sum_probs=54.5

Q ss_pred             CeeE-EEecC--CCCeEEEEcCceeeec------cccchhhhhhcccccc---cCCCCC--EEEEEeCCcceeeeee
Q psy4594          18 FYPS-SSNRK--EFGTALILDGIIQCTE------FDEFSYSEMIAFLPLC---SHPNPK--KVLIFTVGGSTVQYSF   80 (82)
Q Consensus        18 yQ~i-v~~~~--~~G~~L~LDg~~q~se------~de~~YhE~lvh~~~~---~h~~pk--~VLIiGGGDGg~~rEl   80 (82)
                      |.-. +....  .+|++|+|||.+|+++      .++|.|||+|+|++++   +|++||  +||+||+|+|.+++++
T Consensus        31 ~~~~~~~~d~~~~~g~~L~lDG~~Qs~~~l~dP~~le~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~l  107 (317)
T 3gjy_A           31 YSVIELEADSYTTDGWLISINGVPSSHIVLGQPQALEFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYF  107 (317)
T ss_dssp             SSEEEEEECSSSTTEEEEEETTEEEEEEETTCTTCCCSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHH
T ss_pred             eeeEEEEecCCCCceEEEEECCEeEEEEECCCCcchhhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHH
Confidence            4435 55554  4899999999999996      5899999999999998   799988  9999999999998875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=90.06  E-value=0.11  Score=36.84  Aligned_cols=26  Identities=15%  Similarity=0.105  Sum_probs=19.5

Q ss_pred             hhhcccccccCCCCCEEEEEeCCcce
Q psy4594          50 EMIAFLPLCSHPNPKKVLIFTVGGST   75 (82)
Q Consensus        50 E~lvh~~~~~h~~pk~VLIiGGGDGg   75 (82)
                      |.+.+.|++..-+.++|||+|||.-+
T Consensus        18 ~~~~~~Pifl~L~gk~VLVVGgG~va   43 (223)
T 3dfz_A           18 EGRHMYTVMLDLKGRSVLVVGGGTIA   43 (223)
T ss_dssp             ----CCEEEECCTTCCEEEECCSHHH
T ss_pred             cccCccccEEEcCCCEEEEECCCHHH
Confidence            67788899988899999999999754

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=85.75  E-value=0.2  Score=37.59  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=22.4

Q ss_pred             chhhhhhcccccccCCCCCEEEEEeCCccee
Q psy4594          46 FSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV   76 (82)
Q Consensus        46 ~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~   76 (82)
                      +-|.+++.+-.+-..+.+.+|+|||+|-+|.
T Consensus        27 ~~y~~~~~~~~~~~~~~~~~V~IIGAGiaGL   57 (376)
T 2e1m_A           27 LRYLDVLIDNGLNPPGPPKRILIVGAGIAGL   57 (376)
T ss_dssp             HHHHHHHHTSCSSSCCSCCEEEEECCBHHHH
T ss_pred             hhHHHHHHhccCCCCCCCceEEEECCCHHHH
Confidence            5588877774333345788999999997764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=85.20  E-value=0.37  Score=35.07  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=19.0

Q ss_pred             hcccccccCCCCCEEEEEeCCcce
Q psy4594          52 IAFLPLCSHPNPKKVLIFTVGGST   75 (82)
Q Consensus        52 lvh~~~~~h~~pk~VLIiGGGDGg   75 (82)
                      ..+.|+...-+.++|||+|||.=+
T Consensus         2 ~~~lpl~~~l~~k~VLVVGgG~va   25 (274)
T 1kyq_A            2 VKSLQLAHQLKDKRILLIGGGEVG   25 (274)
T ss_dssp             CCCEEEEECCTTCEEEEEEESHHH
T ss_pred             CcceeEEEEcCCCEEEEECCcHHH
Confidence            346677777789999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	82
d2b2ca1	312	c.66.1.17 (A:3-314) Spermidine synthase {Caenorhab	2e-16
d1uira_	312	c.66.1.17 (A:) Spermidine synthase {Thermus thermo	5e-15
d1inla_	295	c.66.1.17 (A:) Spermidine synthase {Thermotoga mar	4e-14
d2o07a1	285	c.66.1.17 (A:16-300) Spermidine synthase {Human (H	1e-13
d1xj5a_	290	c.66.1.17 (A:) Spermidine synthase {Thale cress (A	1e-13
d1mjfa_	276	c.66.1.17 (A:) Putative spermidine synthetase PF01	8e-13
d1iy9a_	274	c.66.1.17 (A:) Spermidine synthase {Bacillus subti	3e-12

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} Length = 312

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 69.4 bits (169), Expect = 2e-16
 Identities = 27/49 (55%), Positives = 35/49 (71%)

Query: 25  RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
              +G  L+LDGI+Q TE DEFSY EM+A LP+ +HP+PK+VLI   G 
Sbjct: 69  STTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGD 117

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} Length = 312

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

 Score = 65.6 bits (159), Expect = 5e-15
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
          K FG  LILD  +Q TE DE+ Y E +    + +HP PK+VLI   G    
Sbjct: 41 KGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGAT 91

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} Length = 295

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

 Score = 62.8 bits (152), Expect = 4e-14
 Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 26  KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVG-GSTVQY 78
            + G    LDGI   TE DEF Y EM+A +P+  HPNPKKVLI   G G T++ 
Sbjct: 53  PDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLRE 106

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 1e-13
 Identities = 35/51 (68%), Positives = 39/51 (76%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
          K +G  L+LDG+IQCTE DEFSY EMIA LPLCSHPNP+KVLI   G   V
Sbjct: 42 KTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGV 92

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 290

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 61.4 bits (148), Expect = 1e-13
 Identities = 29/52 (55%), Positives = 34/52 (65%)

Query: 25 RKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
             +G  L+LDG+IQ TE DE +Y EMI  LPLCS PNPKKVL+   G   V
Sbjct: 43 SATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGV 94

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 276

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 59.0 bits (142), Expect = 8e-13
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGG 73
          + FG  L LDG +Q     E SY E +    + +HP PK+VL+   G 
Sbjct: 36 EGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLVIGGGD 83

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} Length = 274

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

 Score = 57.9 bits (139), Expect = 3e-12
 Identities = 25/51 (49%), Positives = 34/51 (66%)

Query: 26 KEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTV 76
          +EFG  L LDG++  +E DEF Y EM+A +PL +HPNP+ VL+   G   V
Sbjct: 39 EEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGV 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.97
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.96
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.96
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.96
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.95
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.95
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.94
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.59
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.05
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.84
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	90.51
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	90.34
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	89.82
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.54
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	89.1
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	87.84
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	87.17
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	86.68
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	86.45
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	86.44
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	85.35
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	84.85
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	84.59
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	84.58
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	83.9
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	83.8
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.12
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	82.75
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	82.69
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	82.39
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	82.19
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	81.68
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	81.21
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	80.03

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=6.6e-32  Score=199.60  Aligned_cols=74  Identities=36%  Similarity=0.511  Sum_probs=72.2

Q ss_pred             cccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           7 KVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         7 ~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      .+++|++++|+||+| |++++.||++|+|||.+|+|++||++|||||+|+||+.||+||||||||||||+++||+
T Consensus        33 v~~~l~~~~S~yQ~i~i~~s~~~G~~l~LDg~~q~~~~De~~YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~r~~  107 (295)
T d1inla_          33 MNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREV  107 (295)
T ss_dssp             CSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHH
T ss_pred             EEEEEEecCCCCcEEEEEEcCCcceEEEECCEEEEecCchhhhhhhhcchhHhhCCCCceEEEecCCchHHHHHH
Confidence            478999999999999 99999999999999999999999999999999999999999999999999999999986

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=2.7e-31  Score=198.14  Aligned_cols=74  Identities=39%  Similarity=0.651  Sum_probs=72.1

Q ss_pred             cccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           7 KVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         7 ~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      -.++|++++|+||+| |++++.||++|+|||.+|+|++||++|||||+||||++|++||||||||||||+++||+
T Consensus        50 v~~vl~~~~S~yQ~I~i~~~~~~G~~L~LDg~~q~~e~de~~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~rel  124 (312)
T d2b2ca1          50 VKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGILREV  124 (312)
T ss_dssp             EEEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHH
T ss_pred             EEEEEEecCCCCeEEEEEEcCCcCCEEEECCceeeecccHHHHHHHhhhHHHhcCCCCCeEEEeCCCchHHHHHH
Confidence            368999999999999 99999999999999999999999999999999999999999999999999999999986

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=1e-30  Score=192.05  Aligned_cols=74  Identities=42%  Similarity=0.626  Sum_probs=71.9

Q ss_pred             cccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           7 KVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         7 ~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      -.++|++++|+||+| |++++.+|++|+|||.+|+|++||++|||||+|+||++|++||||||||||||+++||+
T Consensus        24 v~~~l~~~~S~yQ~i~v~~~~~~gr~L~LDg~~q~~e~de~~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~   98 (290)
T d1xj5a_          24 VEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREV   98 (290)
T ss_dssp             EEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHH
T ss_pred             EeeEEEeCCCCCeEEEEEEeCCCCeEEEECCeEeeeccchhHHHHHHhhHHHhhCCCCcceEEecCCchHHHHHH
Confidence            368999999999999 99999999999999999999999999999999999999999999999999999999986

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.6e-30  Score=189.00  Aligned_cols=73  Identities=49%  Similarity=0.785  Sum_probs=71.5

Q ss_pred             ccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           8 VRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         8 ~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      .++|++++|+||+| |++++.+|++|+|||.+|++++||++|||||+|+||++|++||+|||||||+|+++||+
T Consensus        23 ~~~l~~~~S~yQ~I~v~~~~~~g~~L~lDg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~   96 (285)
T d2o07a1          23 EQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREV   96 (285)
T ss_dssp             EEEEEEEECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHH
T ss_pred             eeEEEeCCCCCcEEEEEEeCCCCeEEEECCcEEEecCCHHHHHHHhccHhhhhCcCcCeEEEeCCCchHHHHHH
Confidence            68999999999999 99999999999999999999999999999999999999999999999999999999986

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=5.7e-30  Score=189.44  Aligned_cols=74  Identities=35%  Similarity=0.512  Sum_probs=71.6

Q ss_pred             cccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           7 KVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         7 ~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      -.++|++++|+||+| |++++.+|++|+|||.+|++++||++|||||+|+||+.|++||||||||||+|+++||+
T Consensus        21 ~~~~l~~~~s~yQ~I~v~~~~~~G~~L~ldg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~VLiiG~G~G~~~~~l   95 (312)
T d1uira_          21 MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKRVLIVGGGEGATLREV   95 (312)
T ss_dssp             CSEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHH
T ss_pred             EEEEEEeCCCCCceEEEEEcCCcCcEEEECCeeeeccccHHHHHHHHhhhhhhhCCCcceEEEeCCCchHHHHHH
Confidence            357999999999999 99999999999999999999999999999999999999999999999999999999986

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=2.5e-29  Score=183.20  Aligned_cols=73  Identities=37%  Similarity=0.622  Sum_probs=71.4

Q ss_pred             ccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           8 VRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         8 ~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      +++|++++|+||+| |++++.+|++|+|||.+|++++||++|||||+|+||+.|++||+|||||||||+++||+
T Consensus        20 ~~~l~~~~s~yQ~I~v~~~~~~g~~L~LDg~~q~~~~de~~Yhe~l~h~~l~~~~~p~~vLiiGgG~G~~~~~~   93 (274)
T d1iy9a_          20 NKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREI   93 (274)
T ss_dssp             EEEEEEEECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEEESCTTCHHHHHH
T ss_pred             eeEEEeCcCCCcEEEEEEcCCcCeEEEECCceeeecCchhhchhhhccchhhccCCcceEEecCCCCcHHHHHH
Confidence            68999999999999 99999999999999999999999999999999999999999999999999999999986

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.94  E-value=1.5e-28  Score=178.61  Aligned_cols=74  Identities=24%  Similarity=0.359  Sum_probs=71.6

Q ss_pred             cccEEEccCCCCeeE-EEecCCCCeEEEEcCceeeeccccchhhhhhcccccccCCCCCEEEEEeCCcceeeeee
Q psy4594           7 KVRVLSYPNKPFYPS-SSNRKEFGTALILDGIIQCTEFDEFSYSEMIAFLPLCSHPNPKKVLIFTVGGSTVQYSF   80 (82)
Q Consensus         7 ~~~vl~~~~s~yQ~i-v~~~~~~G~~L~LDg~~q~se~de~~YhE~lvh~~~~~h~~pk~VLIiGGGDGg~~rEl   80 (82)
                      ..++|++++|+||+| |++++.+|++|+|||.+|++++||++|||+|+|+||+.|++|++|||||||+|++++|+
T Consensus        16 ~~~~l~~~~S~yq~I~v~~~~~~gr~L~Ldg~~q~~~~de~~Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~~~   90 (276)
T d1mjfa_          16 IKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREV   90 (276)
T ss_dssp             EEEEEEEEECSSCEEEEEEESSSCEEEEETTEEEEETTTTHHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHH
T ss_pred             EeeEEEEecCCCeEEEEEEeCCCCeEEEECCceeeeccchhHHHHHhhcchhhcCCCCceEEEecCCchHHHHHH
Confidence            358999999999999 99999999999999999999999999999999999999999999999999999999985

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.59  E-value=0.0012  Score=42.57  Aligned_cols=29  Identities=31%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             hhhhhc--ccccccCCCCCEEEEEeCCccee
Q psy4594          48 YSEMIA--FLPLCSHPNPKKVLIFTVGGSTV   76 (82)
Q Consensus        48 YhE~lv--h~~~~~h~~pk~VLIiGGGDGg~   76 (82)
                      |-|+|.  ..++-...+||+|+|||||-.|.
T Consensus        13 ~~~~~~~~~~~~~~~~~pkkV~IIGaG~aGL   43 (370)
T d2iida1          13 YEEFLEIARNGLKATSNPKHVVIVGAGMAGL   43 (370)
T ss_dssp             HHHHHHHHHHCSCCCSSCCEEEEECCBHHHH
T ss_pred             HHHHHHHHhcCCCCCCCCCeEEEECCCHHHH
Confidence            555432  33455567999999999998765

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.05  E-value=0.0039  Score=37.46  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=20.3

Q ss_pred             hcccccccCCCCCEEEEEeCCccee
Q psy4594          52 IAFLPLCSHPNPKKVLIFTVGGSTV   76 (82)
Q Consensus        52 lvh~~~~~h~~pk~VLIiGGGDGg~   76 (82)
                      |.|.|+...-+.|+|||+|||.=+.
T Consensus         1 M~~~Pi~l~l~~k~vlVvG~G~va~   25 (113)
T d1pjqa1           1 MDHLPIFCQLRDRDCLIVGGGDVAE   25 (113)
T ss_dssp             CCCEEEEECCBTCEEEEECCSHHHH
T ss_pred             CCccceEEEeCCCEEEEECCCHHHH
Confidence            4567888888999999999997543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.0054  Score=38.28  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=20.2

Q ss_pred             hhcccccccCCCCCEEEEEeCCcce
Q psy4594          51 MIAFLPLCSHPNPKKVLIFTVGGST   75 (82)
Q Consensus        51 ~lvh~~~~~h~~pk~VLIiGGGDGg   75 (82)
                      |+...|+.-.-+.|+|||||||.-+
T Consensus         1 ~~~~lpl~~~l~gkrvLViGgG~va   25 (150)
T d1kyqa1           1 MVKSLQLAHQLKDKRILLIGGGEVG   25 (150)
T ss_dssp             CCCCEEEEECCTTCEEEEEEESHHH
T ss_pred             CcccchhheeeCCCEEEEECCCHHH
Confidence            4567788777799999999999744

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=90.51  E-value=0.088  Score=34.26  Aligned_cols=22  Identities=14%  Similarity=0.353  Sum_probs=16.9

Q ss_pred             cccccCCCCCEEEEEeCCccee
Q psy4594          55 LPLCSHPNPKKVLIFTVGGSTV   76 (82)
Q Consensus        55 ~~~~~h~~pk~VLIiGGGDGg~   76 (82)
                      .|....+++|||+|||||-.|.
T Consensus        35 ~~~~~~~~~k~V~IIGaGPAGL   56 (179)
T d1ps9a3          35 MPILPAVQKKNLAVVGAGPAGL   56 (179)
T ss_dssp             SCCCSCSSCCEEEEECCSHHHH
T ss_pred             cccCCCCCCcEEEEECccHHHH
Confidence            3445567899999999997663

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.34  E-value=0.048  Score=33.44  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=16.7

Q ss_pred             hhhhhcccccccCCCCCEEEEEeCCcce
Q psy4594          48 YSEMIAFLPLCSHPNPKKVLIFTVGGST   75 (82)
Q Consensus        48 YhE~lvh~~~~~h~~pk~VLIiGGGDGg   75 (82)
                      +.+.|-+    ..+.+|||+|||||+-+
T Consensus        18 a~d~L~~----~~~~gkrVvVIGgG~~g   41 (162)
T d1ps9a2          18 YLDVLRD----KAPVGNKVAIIGCGGIG   41 (162)
T ss_dssp             HHHHHTS----CCCCCSEEEEECCHHHH
T ss_pred             HHHHhhC----ccccCCceEEEcCchhH
Confidence            4455555    33567999999998643

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=89.82  E-value=0.08  Score=31.83  Aligned_cols=13  Identities=31%  Similarity=0.268  Sum_probs=11.4

Q ss_pred             CCCCEEEEEeCCc
Q psy4594          61 PNPKKVLIFTVGG   73 (82)
Q Consensus        61 ~~pk~VLIiGGGD   73 (82)
                      ++||||+|||||-
T Consensus        20 ~~p~~v~IiGgG~   32 (117)
T d1onfa2          20 KESKKIGIVGSGY   32 (117)
T ss_dssp             CCCSEEEEECCSH
T ss_pred             CCCCEEEEECCch
Confidence            5699999999985

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.54  E-value=0.059  Score=34.08  Aligned_cols=14  Identities=14%  Similarity=0.332  Sum_probs=11.4

Q ss_pred             CCCEEEEEeCCcce
Q psy4594          62 NPKKVLIFTVGGST   75 (82)
Q Consensus        62 ~pk~VLIiGGGDGg   75 (82)
                      -+++|+||||||-+
T Consensus        44 ~~~kVvVIGGGdtA   57 (153)
T d1gtea3          44 IRGAVIVLGAGDTA   57 (153)
T ss_dssp             CCSEEEEECSSHHH
T ss_pred             CCCEEEEECCChhH
Confidence            35799999999854

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.10  E-value=0.088  Score=31.07  Aligned_cols=17  Identities=18%  Similarity=0.153  Sum_probs=13.3

Q ss_pred             cCCCCCEEEEEeCCcce
Q psy4594          59 SHPNPKKVLIFTVGGST   75 (82)
Q Consensus        59 ~h~~pk~VLIiGGGDGg   75 (82)
                      ....||+|+|||||--|
T Consensus        18 ~~~~p~~v~IiGgG~ig   34 (117)
T d1ebda2          18 LGEVPKSLVVIGGGYIG   34 (117)
T ss_dssp             CSSCCSEEEEECCSHHH
T ss_pred             hhhcCCeEEEECCCccc
Confidence            34678999999998643

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=87.84  E-value=0.029  Score=34.27  Aligned_cols=23  Identities=17%  Similarity=-0.037  Sum_probs=17.8

Q ss_pred             cccCCCCCEEEEEeCCcceeeee
Q psy4594          57 LCSHPNPKKVLIFTVGGSTVQYS   79 (82)
Q Consensus        57 ~~~h~~pk~VLIiGGGDGg~~rE   79 (82)
                      .+..+.++|||.+|-|.|..+..
T Consensus        15 ~l~~~~~~rvLd~GCG~G~~a~~   37 (201)
T d1pjza_          15 SLNVVPGARVLVPLCGKSQDMSW   37 (201)
T ss_dssp             HHCCCTTCEEEETTTCCSHHHHH
T ss_pred             HcCCCCCCEEEEecCcCCHHHHH
Confidence            34557788999999999976543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.17  E-value=0.15  Score=30.05  Aligned_cols=14  Identities=14%  Similarity=0.245  Sum_probs=11.6

Q ss_pred             CCCCEEEEEeCCcc
Q psy4594          61 PNPKKVLIFTVGGS   74 (82)
Q Consensus        61 ~~pk~VLIiGGGDG   74 (82)
                      ..||||+|||||--
T Consensus        19 ~~p~~vvIiGgG~~   32 (115)
T d1lvla2          19 ALPQHLVVVGGGYI   32 (115)
T ss_dssp             SCCSEEEEECCSHH
T ss_pred             cCCCeEEEECCCHH
Confidence            56899999999853

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.68  E-value=0.13  Score=30.44  Aligned_cols=14  Identities=21%  Similarity=0.335  Sum_probs=11.6

Q ss_pred             CCCCEEEEEeCCcc
Q psy4594          61 PNPKKVLIFTVGGS   74 (82)
Q Consensus        61 ~~pk~VLIiGGGDG   74 (82)
                      .-||||+|||||--
T Consensus        19 ~~p~~vvIiGgG~i   32 (116)
T d1gesa2          19 ALPERVAVVGAGYI   32 (116)
T ss_dssp             SCCSEEEEECCSHH
T ss_pred             hCCCEEEEECCChh
Confidence            46899999999853

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=86.45  E-value=0.11  Score=33.60  Aligned_cols=24  Identities=25%  Similarity=0.146  Sum_probs=16.6

Q ss_pred             cccccccC-CCCCEEEEEeCCccee
Q psy4594          53 AFLPLCSH-PNPKKVLIFTVGGSTV   76 (82)
Q Consensus        53 vh~~~~~h-~~pk~VLIiGGGDGg~   76 (82)
                      .||....+ +.+|+|+|||||-.|.
T Consensus        38 ~~p~~~~~~~~~k~VvIIGaGpAGl   62 (233)
T d1djqa3          38 WHPEKFRQTKNKDSVLIVGAGPSGS   62 (233)
T ss_dssp             CCSSCCCCCSSCCEEEEECCSHHHH
T ss_pred             CCCCccCcccCCceEEEEcccHHHH
Confidence            34443332 5789999999997764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.44  E-value=0.17  Score=30.15  Aligned_cols=15  Identities=20%  Similarity=0.197  Sum_probs=12.3

Q ss_pred             cCCCCCEEEEEeCCc
Q psy4594          59 SHPNPKKVLIFTVGG   73 (82)
Q Consensus        59 ~h~~pk~VLIiGGGD   73 (82)
                      ...-|++++|||||-
T Consensus        18 l~~~p~~i~IiG~G~   32 (119)
T d3lada2          18 FQNVPGKLGVIGAGV   32 (119)
T ss_dssp             CSSCCSEEEEECCSH
T ss_pred             cccCCCeEEEECCCh
Confidence            346789999999984

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=85.35  E-value=0.23  Score=29.02  Aligned_cols=16  Identities=6%  Similarity=0.011  Sum_probs=12.5

Q ss_pred             CCCCCEEEEEeCCcce
Q psy4594          60 HPNPKKVLIFTVGGST   75 (82)
Q Consensus        60 h~~pk~VLIiGGGDGg   75 (82)
                      ...+|+|+|+|||.-|
T Consensus        19 ~~~~~~vvVvGgG~ig   34 (121)
T d1mo9a2          19 YEPGSTVVVVGGSKTA   34 (121)
T ss_dssp             SCCCSEEEEECCSHHH
T ss_pred             hCCCCEEEEECCCHHH
Confidence            3457999999999644

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.85  E-value=0.23  Score=30.09  Aligned_cols=14  Identities=36%  Similarity=0.385  Sum_probs=11.7

Q ss_pred             CCCCCEEEEEeCCc
Q psy4594          60 HPNPKKVLIFTVGG   73 (82)
Q Consensus        60 h~~pk~VLIiGGGD   73 (82)
                      ...|++++|||||-
T Consensus        23 ~~~p~~vvIiGgG~   36 (125)
T d1ojta2          23 KEVPGKLLIIGGGI   36 (125)
T ss_dssp             CCCCSEEEEESCSH
T ss_pred             cccCCeEEEECCCH
Confidence            45689999999984

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.59  E-value=0.19  Score=30.07  Aligned_cols=14  Identities=21%  Similarity=0.249  Sum_probs=11.5

Q ss_pred             CCCCEEEEEeCCcc
Q psy4594          61 PNPKKVLIFTVGGS   74 (82)
Q Consensus        61 ~~pk~VLIiGGGDG   74 (82)
                      .-||||+|||||--
T Consensus        20 ~~pk~vvIvGgG~i   33 (125)
T d3grsa2          20 ELPGRSVIVGAGYI   33 (125)
T ss_dssp             SCCSEEEEECCSHH
T ss_pred             hcCCEEEEEcCCcc
Confidence            45799999999853

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=84.58  E-value=0.24  Score=29.01  Aligned_cols=15  Identities=27%  Similarity=0.306  Sum_probs=12.0

Q ss_pred             CCCCEEEEEeCCcce
Q psy4594          61 PNPKKVLIFTVGGST   75 (82)
Q Consensus        61 ~~pk~VLIiGGGDGg   75 (82)
                      .-||+|+|||||--|
T Consensus        16 ~~p~~v~IiGgG~ig   30 (117)
T d1feca2          16 EAPKRALCVGGGYIS   30 (117)
T ss_dssp             SCCSEEEEECSSHHH
T ss_pred             ccCCeEEEECCChHH
Confidence            458999999998543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=83.90  E-value=0.21  Score=29.24  Aligned_cols=24  Identities=21%  Similarity=0.259  Sum_probs=16.1

Q ss_pred             hcccccccCC---CCCEEEEEeCCcce
Q psy4594          52 IAFLPLCSHP---NPKKVLIFTVGGST   75 (82)
Q Consensus        52 lvh~~~~~h~---~pk~VLIiGGGDGg   75 (82)
                      +.|..-...+   ..|+|||||||+-+
T Consensus        18 i~Hs~~y~~~~~f~gK~VlVVG~g~Sa   44 (107)
T d2gv8a2          18 VLHSSLFREPELFVGESVLVVGGASSA   44 (107)
T ss_dssp             EEEGGGCCCGGGGTTCCEEEECSSHHH
T ss_pred             EEECCcCcchhhcCCCeEEEECCCCCH
Confidence            5564433333   56999999999754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.80  E-value=0.27  Score=29.41  Aligned_cols=13  Identities=31%  Similarity=0.345  Sum_probs=11.1

Q ss_pred             CCCCEEEEEeCCc
Q psy4594          61 PNPKKVLIFTVGG   73 (82)
Q Consensus        61 ~~pk~VLIiGGGD   73 (82)
                      ..|||++|||||-
T Consensus        21 ~~p~~~vIiG~G~   33 (122)
T d1v59a2          21 EIPKRLTIIGGGI   33 (122)
T ss_dssp             SCCSEEEEECCSH
T ss_pred             cCCCeEEEECCCc
Confidence            4689999999984

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.12  E-value=0.22  Score=30.13  Aligned_cols=14  Identities=21%  Similarity=0.361  Sum_probs=12.2

Q ss_pred             CCCEEEEEeCCcce
Q psy4594          62 NPKKVLIFTVGGST   75 (82)
Q Consensus        62 ~pk~VLIiGGGDGg   75 (82)
                      +.|+|+|+||||.+
T Consensus        26 ~~k~V~VvGgGdsA   39 (126)
T d1trba2          26 RNQKVAVIGGGNTA   39 (126)
T ss_dssp             TTSEEEEECSSHHH
T ss_pred             CCCEEEEECCCHHH
Confidence            67899999999865

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=82.75  E-value=0.21  Score=29.88  Aligned_cols=15  Identities=27%  Similarity=0.394  Sum_probs=12.1

Q ss_pred             cCCCCCEEEEEeCCc
Q psy4594          59 SHPNPKKVLIFTVGG   73 (82)
Q Consensus        59 ~h~~pk~VLIiGGGD   73 (82)
                      ...-||+++|||||-
T Consensus        21 l~~~p~~~viiG~G~   35 (123)
T d1dxla2          21 LSEIPKKLVVIGAGY   35 (123)
T ss_dssp             CSSCCSEEEESCCSH
T ss_pred             ccccCCeEEEEccch
Confidence            345789999999984

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.69  E-value=0.32  Score=28.63  Aligned_cols=13  Identities=31%  Similarity=0.399  Sum_probs=11.2

Q ss_pred             CCCCEEEEEeCCc
Q psy4594          61 PNPKKVLIFTVGG   73 (82)
Q Consensus        61 ~~pk~VLIiGGGD   73 (82)
                      ..|++|+|||||-
T Consensus        18 ~~p~~v~ivGgG~   30 (117)
T d1aoga2          18 EPPRRVLTVGGGF   30 (117)
T ss_dssp             SCCSEEEEECSSH
T ss_pred             hcCCeEEEECCcH
Confidence            5689999999984

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.39  E-value=0.31  Score=29.07  Aligned_cols=15  Identities=20%  Similarity=0.372  Sum_probs=12.4

Q ss_pred             CCCCCEEEEEeCCcc
Q psy4594          60 HPNPKKVLIFTVGGS   74 (82)
Q Consensus        60 h~~pk~VLIiGGGDG   74 (82)
                      .+++|+|+|||||--
T Consensus        27 ~~~~k~vvViGgG~i   41 (123)
T d1nhpa2          27 DPEVNNVVVIGSGYI   41 (123)
T ss_dssp             CTTCCEEEEECCSHH
T ss_pred             ccCCCEEEEECChHH
Confidence            467899999999853

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.19  E-value=0.28  Score=29.42  Aligned_cols=14  Identities=21%  Similarity=0.152  Sum_probs=11.7

Q ss_pred             CCCCCEEEEEeCCc
Q psy4594          60 HPNPKKVLIFTVGG   73 (82)
Q Consensus        60 h~~pk~VLIiGGGD   73 (82)
                      ...|+|++|||||-
T Consensus        17 ~~~P~~vvIIGgG~   30 (122)
T d1h6va2          17 PYCPGKTLVVGASY   30 (122)
T ss_dssp             SSCCCSEEEECCSH
T ss_pred             ccCCCeEEEECCCc
Confidence            45789999999984

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=81.68  E-value=0.37  Score=28.94  Aligned_cols=19  Identities=21%  Similarity=0.343  Sum_probs=13.7

Q ss_pred             cccccccCCCCCEEEEEeCCc
Q psy4594          53 AFLPLCSHPNPKKVLIFTVGG   73 (82)
Q Consensus        53 vh~~~~~h~~pk~VLIiGGGD   73 (82)
                      +-.|+.  |+..||.|||||-
T Consensus         3 ~~~~~~--~~~~kigIlGgGQ   21 (111)
T d1kjqa2           3 LGTALR--PAATRVMLLGSGE   21 (111)
T ss_dssp             BCCTTS--TTCCEEEEESCSH
T ss_pred             cCCCCC--CCCCEEEEEeCCH
Confidence            344554  6777999999984

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=81.21  E-value=0.17  Score=30.77  Aligned_cols=14  Identities=29%  Similarity=0.361  Sum_probs=12.1

Q ss_pred             CCCEEEEEeCCcce
Q psy4594          62 NPKKVLIFTVGGST   75 (82)
Q Consensus        62 ~pk~VLIiGGGDGg   75 (82)
                      ..|+|+|+||||.+
T Consensus        29 ~gk~V~VvGgG~sA   42 (126)
T d1fl2a2          29 KGKRVAVIGGGNSG   42 (126)
T ss_dssp             BTCEEEEECCSHHH
T ss_pred             CCceEEEEeCCHHH
Confidence            56899999999965

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.03  E-value=0.32  Score=31.61  Aligned_cols=13  Identities=8%  Similarity=0.266  Sum_probs=10.9

Q ss_pred             CCCEEEEEeCCcc
Q psy4594          62 NPKKVLIFTVGGS   74 (82)
Q Consensus        62 ~pk~VLIiGGGDG   74 (82)
                      ..|+|+|||||+=
T Consensus        38 ~gk~VvVIGgGNv   50 (216)
T d1lqta1          38 SGARAVVIGNGNV   50 (216)
T ss_dssp             CSSEEEEECCSHH
T ss_pred             cCceEEEECCCch
Confidence            4689999999973