Psyllid ID: psy4604

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MENENISLGQEVNIPERLLKREQERISAIEKRQEKKGDKEHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKKFGFKKVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLLQLSSTTHAY
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEccccccccccEEEEEccccEEEEcccccEEEEccccccEEEEEccccEEEEEcccccEEEEEEcEEEEcccccEEEEEEcccccEEEcccccEEEccccccccHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccccHHcccccccEEEcccccEEEEcccccccccEEEEcccccEEEEEccccEEEEEccccEEEEEEccccEEEEEcccccEEEEEEEEEEEEccccEEEEEEEEcccEEEccccEEEcccccccccHHHHccccccc
Coil and Loop (DISEMBL)
menenislgqevnipeRLLKREQERISAIEKRqekkgdkehdgfsnmfnENYDKIKGMIneidvdpnsgsvnkEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILetkllprkkfgfkkvdkvklggqgdktdeaekkilpkddvdfvkprqheeetyigfynrsnetlelpsedvhkkpvslsnidscvvkvngnastihlnniknsqiflgpvsnsvfidnctdsTLYLACHQlrmhtshkcsvylhvtsrpiiehcknigfapavnidpvllqlsstthay
Flexible Loop (DISEMBL)
menenislgqevniperllkREQERISAIekrqekkgdkehdgfsnMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILetkllprkkfgfkkvdkvklggqgdktdeaekkilpkddvdfvkprqheeetyigfynrsNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLLQLSSTTHAY
Low Complexity Region (SEG)
MENENISLGQEVNIPERLLKREQERISAIEKRQEKKGDKEHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRkkfgfkkvdkvklggQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLLQLSSTTHAY
Disordered region (IsUnstruct)
******************************************************IKGMI*******************KFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKKFGFKKVDKV*********************************TYIGFYN*****************VSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLLQL*******
Disordered Region (DISOPRED)
***********************************************FNENYDKIK**********************KFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQEL******************************************************HEEETYIGFYNRSNETLEL********PVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLLQ********
Disordered Region (DISEMBL)
MENENISLGQEVNIPERLLKREQERISAIE**********HDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKKFGFKKVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLLQLSSTTHAY
Disordered Region (DISPRO)
**********EVNIPERLLKREQERISAIEKRQEKKGDKEHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKKFGFK**********************************HEEETYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLLQLS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENENISLGQEVNIPERLLKREQERISAIEKRQEKKGDKEHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDxxxxxxxxxxxxxxxxxxxxxLLPRKKFGFKKVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLLQLSSTTHAY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q3SZE9	345	Tubulin-specific chaperon	yes	N/A	0.857	0.750	0.309	3e-35
Q8VCN9	341	Tubulin-specific chaperon	yes	N/A	0.847	0.750	0.312	2e-34
Q5R5J7	346	Tubulin-specific chaperon	yes	N/A	0.860	0.751	0.302	9e-32
Q15814	346	Tubulin-specific chaperon	yes	N/A	0.860	0.751	0.302	2e-31
Q9SMR2	345	Tubulin-folding cofactor	yes	N/A	0.764	0.669	0.315	3e-20
Q9EPK2	347	Protein XRP2 OS=Mus muscu	no	N/A	0.420	0.365	0.300	1e-11
O75695	350	Protein XRP2 OS=Homo sapi	no	N/A	0.456	0.394	0.281	4e-11
Q5ZHN4	357	Protein XRP2 OS=Gallus ga	no	N/A	0.347	0.294	0.285	4e-10
Q9P3T8	259	Tubulin-specific chaperon	yes	N/A	0.569	0.664	0.241	7e-10
Q8AVX5	353	Protein XRP2 OS=Xenopus l	N/A	N/A	0.347	0.297	0.276	2e-09

>sp|Q3SZE9|TBCC_BOVIN Tubulin-specific chaperone C OS=Bos taurus GN=TBCC PE=2 SV=1

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 144/278 (51%), Gaps = 19/278 (6%)

Query: 14  IPERLLKREQERISAIEKRQEKKGDKE-HDGFSNMFNENYDKIKGMINEIDVDPNSGSVN 72
           +PERL KRE ER   +E+R++K+ D+E  +  S+ F   + + +  + E+        + 
Sbjct: 25  VPERLQKREHERQLEVERRKQKRQDQEVEEEKSDFFAAAFARERSAVEEL--------LE 76

Query: 73  KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKK 132
             E  E+  +   ++  L  +I D+ +FL +YD++     L  L         +L P+K+
Sbjct: 77  SGESVERLEEAAARLQGLQKLINDSVLFLAAYDLRQAQEVLARLQAALAKRRQELQPKKR 136

Query: 133 FGFKKVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEE-----TYI-GFYNRSNET 186
           F FK   K         T  A     P  +     P   +EE     ++I GF N  ++ 
Sbjct: 137 FAFKTRKK----DAASATQVASAPDAPAAEGSLTSPPPLKEEGDFDSSWICGFSNLQSQV 192

Query: 187 LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDST 246
           LE  +E++H++ V L+ + +C +K+ GN +T+ L   +   +  GPVS SVF+++C+D  
Sbjct: 193 LEKRAEELHQQDVLLTQLRNCTIKLYGNPNTLRLTKAQGCTLLCGPVSTSVFLEDCSDCV 252

Query: 247 LYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
           L +AC QLR+HT+    ++L VTSR I+E C  I FAP
Sbjct: 253 LAVACQQLRVHTTKDTRIFLQVTSRAIMEDCTGIQFAP 290

Tubulin-folding protein; involved in the final step of the tubulin folding pathway.
Bos taurus (taxid: 9913)

>sp|Q8VCN9|TBCC_MOUSE Tubulin-specific chaperone C OS=Mus musculus GN=Tbcc PE=2 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/278 (31%), Positives = 143/278 (51%), Gaps = 22/278 (7%)

Query: 14  IPERLLKREQERISAIEKRQEKKGDKE-HDGFSNMFNENYDKIKGMINEIDVDPNSGSVN 72
           +PERL +REQER   +E+R++K+ D+E  +  S  F   + + +  + E+        + 
Sbjct: 24  VPERLQRREQERQIEVERRKQKRQDQEVEEEKSGFFAAAFARERAAVEEL--------LR 75

Query: 73  KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKK 132
            E   E+  +   ++  L  ++ D+ +FL +YD++     L +L         +L P+K+
Sbjct: 76  GEASAERLEEAANRLQGLRKLLNDSVLFLAAYDLRQGQAALAQLQAVLTERRQELQPKKR 135

Query: 133 FGFKKVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEE------TYIGFYNRSNET 186
           F FK   K       D    A+    P        P   EEE         GF N  ++ 
Sbjct: 136 FAFKARKK-------DAAGTAQVDAAPVTSAAPSPPVTKEEEGAPGASWACGFSNLESQD 188

Query: 187 LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDST 246
           LE  +E++H++ V LS++ +C VK+ GN +T+ L   +  ++  GPV+ SVF+++C D  
Sbjct: 189 LEKRAEELHQRDVLLSDLTNCTVKLCGNPNTLRLAKARGCKVLCGPVTTSVFLEDCRDCV 248

Query: 247 LYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
           L +AC QLR+HT+    V+L VTSR I+E C  I FAP
Sbjct: 249 LAVACQQLRVHTTKDTRVFLQVTSRAIVEDCSGIQFAP 286

Tubulin-folding protein; involved in the final step of the tubulin folding pathway.

Mus musculus (taxid: 10090)

>sp|Q5R5J7|TBCC_PONAB Tubulin-specific chaperone C OS=Pongo abelii GN=TBCC PE=2 SV=1

 Score =  137 bits (345), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 146/278 (52%), Gaps = 18/278 (6%)

Query: 14  IPERLLKREQERISAIEKRQEKKGDKEHDGF-SNMFNENYDKIKGMINEIDVDPNSGSVN 72
           +PERL +REQER   +E+R++K+ ++E +   S+ F   + + +  + E+        + 
Sbjct: 25  VPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFAATFARERAAVEEL--------LE 76

Query: 73  KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKK 132
           + E  E+  +   ++  L  +I D+  FL +YD++     L  L         +L P+K+
Sbjct: 77  RAESVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRELQPKKR 136

Query: 133 FGFKKVDKVKLGGQGDKTDEAEKKILPKDDV--DFVKPRQHE----EETYIGFYNRSNET 186
           F FK   + K      K D A   I P  +   D   P++ E         GF N  ++ 
Sbjct: 137 FAFKT--RGKDAASCTKVDAA-PGIPPAVESIQDSPLPKKAEGDLGSSWLCGFSNLESQV 193

Query: 187 LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDST 246
           LE  + ++H++ V L+ + +C V++ GN +T+ L    + ++  GPVS SVF+++C+D  
Sbjct: 194 LEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCV 253

Query: 247 LYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
           L +AC QLR+H++    ++L VTSR I+E C  I FAP
Sbjct: 254 LAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAP 291

Tubulin-folding protein; involved in the final step of the tubulin folding pathway.

Pongo abelii (taxid: 9601)

>sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C OS=Homo sapiens GN=TBCC PE=1 SV=2

 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 149/278 (53%), Gaps = 18/278 (6%)

Query: 14  IPERLLKREQERISAIEKRQEKKGDKEHDGF-SNMFNENYDKIKGMINEIDVDPNSGSVN 72
           +PERL +REQER   +E+R++K+ ++E +   S+ F   + + +  + E+        + 
Sbjct: 25  VPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVATFVRERAAVEEL--------LE 76

Query: 73  KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKK 132
           + E  E+  +   ++  L  +I D+  FL +YD++     L  L          L P+K+
Sbjct: 77  RAESVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKKR 136

Query: 133 FGFKKVDKVKLGGQGDKTDEAEKKILPKDDV--DFVKPRQHEEE---TYI-GFYNRSNET 186
           F FK   + K      K D A   I P  +   D   P++ E +   +++ GF N  ++ 
Sbjct: 137 FAFKT--RGKDAASSTKVDAA-PGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQV 193

Query: 187 LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDST 246
           LE  + ++H++ V L+ + +C V++ GN +T+ L    + ++  GPVS SVF+++C+D  
Sbjct: 194 LEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCV 253

Query: 247 LYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
           L +AC QLR+H++    ++L VTSR I+E C  I FAP
Sbjct: 254 LAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAP 291

Tubulin-folding protein; involved in the final step of the tubulin folding pathway.

Homo sapiens (taxid: 9606)

>sp|Q9SMR2|TBCC_ARATH Tubulin-folding cofactor C OS=Arabidopsis thaliana GN=POR PE=1 SV=1

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 10/241 (4%)

Query: 44  FSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTS 103
           F   F+++   I+  I E  +   S S +  +LK   A+I+  I  L  ++ +   FL S
Sbjct: 56  FLAKFSDSKRSIESRIAESRL--ASSSTDSSKLKSDLAEISVAIDNLEKLLAENSYFLPS 113

Query: 104 YDMKIYNNKLQELTEQCNILETKLLPRKKFGFKKVDKVKLGGQGDKTDEAEKKILPKDDV 163
           Y+++     + +L +  +IL  +L+P+KKF FK     K         E++   + K DV
Sbjct: 114 YEVRSSLKIVSDLKQSLDILSGELVPKKKFSFKSKSTTK-------KPESKLPEIQKPDV 166

Query: 164 DFVKPRQHEEETYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNI 223
             + P+        G  N+  ETL    E       +LS++DSC VK+ G  + + L+ +
Sbjct: 167 -VLPPKLVPVRDSPGLRNKHGETLVKSFEGSSIGEFTLSDLDSCQVKLTGTVNALFLHRL 225

Query: 224 KNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFA 283
           K   ++ GPV  S+ ID+  D  L LA HQ+R+H + K   YL V SRPIIE    + FA
Sbjct: 226 KKCSVYTGPVIGSILIDDVEDCVLVLASHQIRIHCARKSDFYLRVRSRPIIEDSNGVRFA 285

Query: 284 P 284
           P
Sbjct: 286 P 286

Essential tubulin-folding protein involved in the final step of the tubulin folding pathway. Required for continuous microtubule cytoskeleton organization, mitotic division, cytokinesis, and to couple cell cycle progression to cell division in embryos and endosperms.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9EPK2|XRP2_MOUSE Protein XRP2 OS=Mus musculus GN=Rp2 PE=1 SV=3

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 151 DEAEKKILPKDDVDFVKPRQHEEETYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVK 210
           +E + K+   D  + V P+ +       F    +ET+      V  +   + + ++C + 
Sbjct: 17  EEEQPKLYSWDQREKVDPKDYM------FSGLKDETVGRLPGKVAGQQFVIQDCENCNIY 70

Query: 211 VNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTS 270
           +  +++TI +++  N  IFLGPV  SVF  NC D    LAC Q R+    K  V+L   +
Sbjct: 71  IFDHSATITIDDCTNCVIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCCAT 130

Query: 271 RPIIEHCKNIGFA 283
           +PIIE   NI F 
Sbjct: 131 QPIIESSTNIKFG 143

Acts as a GTPase-activating protein (GAP) involved in trafficking between the Golgi and the ciliary membrane. Involved in localization of proteins, such as NPHP3, to the cilium membrane by inducing hydrolysis of GTP ARL3, leading to the release of UNC119 (or UNC119B). Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. Acts as guanine nucleotide dissociation inhibitor towards ADP-ribosylation factor-like proteins.

Mus musculus (taxid: 10090)

>sp|O75695|XRP2_HUMAN Protein XRP2 OS=Homo sapiens GN=RP2 PE=1 SV=4

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 11/149 (7%)

Query: 143 LGGQGDKTDEAEKKILPKDDVDFVKPRQHEEET--------YIGFYNRSNETLELPSEDV 194
           +G    K  +A+K+  P+++ +  +P+Q+  +         Y+ F    +ET+      V
Sbjct: 1   MGCFFSKRRKADKESRPENEEE--RPKQYSWDQREKVDPKDYM-FSGLKDETVGRLPGTV 57

Query: 195 HKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQL 254
             +   + + ++C + +  +++T+ +++  N  IFLGPV  SVF  NC D    LAC Q 
Sbjct: 58  AGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQF 117

Query: 255 RMHTSHKCSVYLHVTSRPIIEHCKNIGFA 283
           R+    K  V+L   ++PIIE   NI F 
Sbjct: 118 RVRDCRKLEVFLCCATQPIIESSSNIKFG 146

Acts as a GTPase-activating protein (GAP) involved in trafficking between the Golgi and the ciliary membrane. Involved in localization of proteins, such as NPHP3, to the cilium membrane by inducing hydrolysis of GTP ARL3, leading to the release of UNC119 (or UNC119B). Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. Acts as guanine nucleotide dissociation inhibitor towards ADP-ribosylation factor-like proteins.

Homo sapiens (taxid: 9606)

>sp|Q5ZHN4|XRP2_CHICK Protein XRP2 OS=Gallus gallus GN=RP2 PE=2 SV=3

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%)

Query: 179 FYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVF 238
           F    +ET+      V  +   + + ++C + +  +++T+ +++  N QIFLGP+  SVF
Sbjct: 49  FSGLKDETVGRLPGRVAGQQFVIQDCENCSIYIFDHSATVTIDDCVNCQIFLGPIKGSVF 108

Query: 239 IDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFA 283
             NC D    +AC Q R     +  V+L   ++PIIE    + F 
Sbjct: 109 FRNCKDCKCIVACQQFRTRDCRRLEVFLCCATQPIIESSTGMKFG 153

Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. Acts as a GTPase-activating protein. May act as guanine nucleotide dissociation inhibitor towards ADP-ribosylation factor-like proteins.

Gallus gallus (taxid: 9031)

>sp|Q9P3T8|TBCC_SCHPO Tubulin-specific chaperone C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cin2 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 14/186 (7%)

Query: 101 LTSYDMKIYNNKLQELTEQCNILETKLLPRKKFGFKKVDKVKLGGQGDKTDEAEKKILPK 160
           +  YD ++   +L +LT +   +   +LPR+ F F++   VK          + +K +  
Sbjct: 55  IAPYDRRVCMEQLVDLTRRLQQIRHDILPRQPFRFQRALHVK----------SSQKPVKN 104

Query: 161 DDVDFVKPRQHEEETYIGFYNRSNETLE---LPSEDVHKKPVSLSNIDSCVVKVNGNAST 217
             V+   P  + E   +   N  N+ +    +P  +     VS  ++ SC + +  N S+
Sbjct: 105 ITVNAEAPEVYFENDTLYLANLKNQNIGDNVIPYPNNKAVKVSAKSLRSCNISI-SNCSS 163

Query: 218 IHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHC 277
           ++L+N          +  S+ + +  DST+ ++CHQ R+H S    V+L   + P+IE  
Sbjct: 164 VNLHNATKCNFTFPTIQGSIHLSDINDSTICVSCHQFRLHHSTNLRVHLRCKTSPVIEES 223

Query: 278 KNIGFA 283
           K I F+
Sbjct: 224 KEISFS 229

Tubulin-folding protein; involved in the final step of the tubulin folding pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8AVX5|XRP2_XENLA Protein XRP2 OS=Xenopus laevis GN=rp2 PE=2 SV=3

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 55/105 (52%)

Query: 179 FYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVF 238
           F    ++T+    + V  +   +   ++C + +  +++TI +++  N +IFLGPV  SVF
Sbjct: 45  FTGLKDQTVGKLPDKVAGQQFVIQECENCNIYIFDHSATITIDDCTNCRIFLGPVKGSVF 104

Query: 239 IDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFA 283
             +C D    +AC Q R     +  V+L  +++PIIE   ++ F 
Sbjct: 105 FRDCKDCKCVVACQQFRTRDCRRMDVFLCCSTQPIIESSTSMKFG 149

Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. Acts as a GTPase-activating protein. May act as guanine nucleotide dissociation inhibitor towards ADP-ribosylation factor-like proteins.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
91081657	323	PREDICTED: similar to beta-tubulin cofac	0.821	0.767	0.386	6e-42
390346129	353	PREDICTED: tubulin-specific chaperone C-	0.864	0.739	0.362	1e-41
332019428	342	Tubulin-specific chaperone C [Acromyrmex	0.887	0.783	0.349	7e-39
307173803	342	Tubulin-specific chaperone C [Camponotus	0.887	0.783	0.349	2e-38
380020162	342	PREDICTED: tubulin-specific chaperone C-	0.887	0.783	0.339	5e-38
348531892	347	PREDICTED: tubulin-specific chaperone C-	0.870	0.757	0.338	2e-37
307207956	343	Tubulin-specific chaperone C [Harpegnath	0.887	0.781	0.334	3e-37
328784224	342	PREDICTED: tubulin-specific chaperone C-	0.887	0.783	0.339	3e-37
340714763	342	PREDICTED: tubulin-specific chaperone C-	0.887	0.783	0.342	7e-37
156547691	344	PREDICTED: tubulin-specific chaperone C-	0.887	0.779	0.343	7e-37

>gi|91081657|ref|XP_969186.1| PREDICTED: similar to beta-tubulin cofactor C [Tribolium castaneum] gi|270006233|gb|EFA02681.1| hypothetical protein TcasGA2_TC008402 [Tribolium castaneum]

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 105/272 (38%), Positives = 162/272 (59%), Gaps = 24/272 (8%)

Query: 18  LLKREQERISAIEKRQEKKGDKEHDG-----FSNMFNENYDKIKGMINEIDVDPNSGSVN 72
           + +R+ +R   ++K++E K  +  D      F+  F+    +I+  + +      S  ++
Sbjct: 14  IAQRDYDRKLGLQKQKETKESQSADTEKLAYFNETFSNKRQQIENFLTQ------SSDLD 67

Query: 73  KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKK 132
           K  L + F  I+K+ILLL   + ++ IFL SYD+K  +  LQELT +   LE  LLP+KK
Sbjct: 68  KAALPQHFDTISKEILLLQKYVANSNIFLRSYDIKKCHESLQELTNKLKQLEENLLPKKK 127

Query: 133 FGFKKVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIGFYNRSNETLELPSE 192
           FGFK         Q  K  E +K+   KD+VDF K     +E   GF N++ ETL + +E
Sbjct: 128 FGFK-------NKQNVKPVETKKE---KDEVDFHKVAIVAKE--CGFANKTGETLTMKNE 175

Query: 193 DVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACH 252
            + KK +++  +++C VK+ G+ ST+HLN +KN ++F GPVS S+F +NCT+ TL +AC 
Sbjct: 176 -IFKKDITVEKLENCTVKLFGSPSTLHLNQLKNCRVFTGPVSTSIFAENCTNCTLVIACQ 234

Query: 253 QLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
           QLR+H+S    +YLHVTSR I+E C +I  AP
Sbjct: 235 QLRLHSSSDVDIYLHVTSRAIMEDCHDIFLAP 266

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390346129|ref|XP_003726483.1| PREDICTED: tubulin-specific chaperone C-like [Strongylocentrotus purpuratus]

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/276 (36%), Positives = 156/276 (56%), Gaps = 15/276 (5%)

Query: 14  IPERLLKREQERISAIEKRQEKKGDKE-----HDGFSNMFNENYDKIKGMINEIDVDPNS 68
           IP  L++R +ER++ +EK +E++ +++      D F+  FN     I+  +        +
Sbjct: 33  IPAGLVRRHEERLARVEKMKEQRENEKVVQESADYFAKTFNAQRSSIEERL------ATA 86

Query: 69  GSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLL 128
            +V K  L++ F DI +    L     D   FL S+D++   N L +L +  N    +LL
Sbjct: 87  NNVAKSNLRDFFDDITEVAQKLQKYATDMTQFLPSHDIQSAQNNLTKLFDSINEKRDELL 146

Query: 129 PRKKFGFKKVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIGFYNRSNETLE 188
           P+KKF FK    V+  G G+   + + + +  D VD  +P +   E   GF NR++E L 
Sbjct: 147 PKKKFAFK----VRKRGDGEANKQQQAQKIGLDVVDAPQPSKIITENAAGFVNRTSENLS 202

Query: 189 LPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLY 248
           L +E+++ K VSLSN+ SC VK+ G+ S +H++N+ + +IF GP+  SVF D C +STL 
Sbjct: 203 LSAEEIYLKDVSLSNLSSCTVKLPGSPSALHISNLSDCKIFCGPIPGSVFADKCIESTLV 262

Query: 249 LACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
           LAC QLR+H S     YLHVTSR IIE   ++ +AP
Sbjct: 263 LACQQLRVHNSKDAKFYLHVTSRAIIEDTTSVLYAP 298

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|332019428|gb|EGI59912.1| Tubulin-specific chaperone C [Acromyrmex echinatior]

 Score =  167 bits (422), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 160/286 (55%), Gaps = 18/286 (6%)

Query: 11  EVNIPERLLKREQERISAIEKRQEKKGD-----KEHDGFSNMFNENYDKIKGMINEIDVD 65
           E ++P+R+ KR++ER + IE+R+E++       ++   F + F  +  KIK M+++    
Sbjct: 8   EESLPDRITKRDRERKNVIERRREERQSLAVESEQSSYFKDTFYSSCKKIKDMLDDASST 67

Query: 66  PNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILET 125
           P+S       L   F   NK+I LL + +  +K+FL  YD++     LQ L  Q + LE 
Sbjct: 68  PSSA------LPGIFEKSNKEIQLLKNYLSQSKMFLKVYDIRRAQENLQSLENQASELEM 121

Query: 126 KLLPRKKFGFKKVDKVKLGGQG--DKTDEAEKKILPKDDVDFVKPRQHEEETYIG----- 178
           KLLP+KKFGFK    VK       D TD  +   + +  V+    + ++  +  G     
Sbjct: 122 KLLPKKKFGFKNRRIVKKPSDKGLDITDGLKDLKISESIVNGSTKQNNKLSSKYGDSACM 181

Query: 179 FYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVF 238
              + NE + L +E+V+K  + LS++  C V++ G  ST+H+ N+K   I +GPV++SV+
Sbjct: 182 LLGKINERIVLDAENVNKNDILLSDLVRCTVRIYGTPSTLHMVNLKQCTILVGPVTSSVY 241

Query: 239 IDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
           + +C+D     AC QLR+H+S  C++YLHVTSR IIE C  I  AP
Sbjct: 242 VHDCSDCVFAFACQQLRLHSSTDCTIYLHVTSRAIIEDCTKIRVAP 287

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173803|gb|EFN64582.1| Tubulin-specific chaperone C [Camponotus floridanus]

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 163/286 (56%), Gaps = 18/286 (6%)

Query: 11  EVNIPERLLKREQERISAIEKRQEKKGD-----KEHDGFSNMFNENYDKIKGMINEIDVD 65
           E ++P+R+ KR++ER + IE+R+E++       ++ + F + F  +  KIK M+N+    
Sbjct: 8   EGSLPDRITKRDRERKNIIERRKEERQSLIVESEQSNYFKDTFYSSCKKIKDMLND---- 63

Query: 66  PNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILET 125
             + S++   L   F   NK+I LL + ++ +KIFL  YD++     LQ L  + + LE 
Sbjct: 64  --APSISSSALPGIFEKSNKEIQLLKNYLLQSKIFLKVYDIRRAQENLQMLENEASELEM 121

Query: 126 KLLPRKKFGFKKVDKVKLGGQG--DKTDEAEKKILPKDDVDFVKPRQHEEETYIG----- 178
           KLLP+KKFGFK    VK       D TD  +   + +  V+    + ++  +  G     
Sbjct: 122 KLLPKKKFGFKNRRIVKKPSDKGLDITDGLKDLQISESIVNGSSKQNNKLSSKYGDNACM 181

Query: 179 FYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVF 238
             ++ NE L L +E+V+K  + LS++  C +++ G  ST+H+ N+K   I +GPV++SVF
Sbjct: 182 LLSKVNEQLVLDAENVNKNDILLSDLIKCTIRIYGTPSTLHMVNLKQCTILVGPVTSSVF 241

Query: 239 IDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
             +C++     AC QLR+H+S  C++YLHVTSR IIE C  I  AP
Sbjct: 242 AHDCSECVFAFACQQLRLHSSTDCTIYLHVTSRAIIEDCTKIYVAP 287

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020162|ref|XP_003693963.1| PREDICTED: tubulin-specific chaperone C-like isoform 1 [Apis florea] gi|380020164|ref|XP_003693964.1| PREDICTED: tubulin-specific chaperone C-like isoform 2 [Apis florea]

 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/286 (33%), Positives = 160/286 (55%), Gaps = 18/286 (6%)

Query: 11  EVNIPERLLKREQERISAIEKRQEKKGD-----KEHDGFSNMFNENYDKIKGMINEIDVD 65
           E ++P+R+ KR++ER + IE+R+E++       ++   F + F  +  +IK M+++    
Sbjct: 8   EGSLPDRITKRDRERKNVIERRREERQSLAVESEQSSYFKDTFYSSCKQIKDMLDDASSA 67

Query: 66  PNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILET 125
           P S       L   F  INK+I +L + +  +K+FL  YD++     LQ L  + + LE 
Sbjct: 68  PISA------LPGIFDKINKEIQMLKNYLSQSKMFLKVYDIRRAQENLQLLENEASDLEM 121

Query: 126 KLLPRKKFGFK--KVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIG----- 178
           KLLP+KKFGFK  +V K       D TD  +   + +  V+    + H+  +  G     
Sbjct: 122 KLLPKKKFGFKNRRVVKKTSDKTHDMTDGLKDLKISEGIVNGSAKQNHKLSSKYGDSACM 181

Query: 179 FYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVF 238
              + NE L L +E+V+K  + LS++  C +++ G  ST+H+ N+K   + +GPV++SVF
Sbjct: 182 LLGKVNEQLVLDAENVNKNDILLSDLIRCTIRIYGTPSTLHMVNLKQCTVLVGPVTSSVF 241

Query: 239 IDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
             +C++     AC QLR+H+S  C++Y+HVTSR IIE C  I  AP
Sbjct: 242 AHDCSECVFAFACQQLRLHSSTDCTIYIHVTSRSIIEDCTKIRVAP 287

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348531892|ref|XP_003453442.1| PREDICTED: tubulin-specific chaperone C-like [Oreochromis niloticus]

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/298 (33%), Positives = 153/298 (51%), Gaps = 35/298 (11%)

Query: 12  VNIPERLLKREQERISAIEKRQEKK-----GDKEHDGFSNMFNENYDKIKGMINEIDVDP 66
           V I ERL KR Q RI   E+R+E K      +++ + FS+ FN     I+ +++      
Sbjct: 20  VRIQERLQKRHQARIEDAERRKEAKESHSVAEEKSEYFSSTFNRERACIEELLS------ 73

Query: 67  NSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETK 126
           +     +  + EK  +   + L L   + D+  FLT Y+++     LQ+L  Q ++ ETK
Sbjct: 74  SCSGAERAVVTEKLEEATTKTLQLQKFLNDSMQFLTQYELRQAQAALQKL--QTSLSETK 131

Query: 127 --LLPRKKFGFKKVDKVKLGGQGDKTDEAEKKILPKDD----------VDFVKPRQHEEE 174
              LPRKKF F+   K       DK    +    P+D+          VD   P +    
Sbjct: 132 EEALPRKKFAFRTRTKA-----ADKASAQDAHPPPRDEGTPLETSRTQVDGAAPAEQ--- 183

Query: 175 TYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVS 234
              GF N ++E +   +E++ K+ V L+++ +C V++ G+ ST+HL +I   +I  GPVS
Sbjct: 184 --CGFSNMTSEFITKTAEEIQKRDVLLTHLTNCKVRLFGSPSTLHLKHIDGCEILCGPVS 241

Query: 235 NSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVL 292
           +SVF+DNC +S L   C QLR H +    VYLHVTSR IIE C+ + FAP     P L
Sbjct: 242 SSVFVDNCRNSVLAFPCQQLRTHNTTDTQVYLHVTSRAIIEDCRAVSFAPFTWSYPTL 299

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307207956|gb|EFN85515.1| Tubulin-specific chaperone C [Harpegnathos saltator]

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 159/287 (55%), Gaps = 19/287 (6%)

Query: 11  EVNIPERLLKREQERISAIEKRQEKKGD-----KEHDGFSNMFNENYDKIKGMINEIDVD 65
           E ++P+R+ KR++ER + IE+R+E++       ++   F + F  +  KIK M+++    
Sbjct: 8   EGSLPDRITKRDRERKNVIERRREERQSLTVESEQSSYFKDTFYSSCKKIKDMLDD---- 63

Query: 66  PNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILET 125
             + S +   L   F   NK+I LL + +  +K+FL  YD++     LQ L  Q + +E 
Sbjct: 64  --APSTSSSALPGIFEKTNKEIQLLKNYLSQSKMFLKVYDIRRAQENLQLLENQASEMEL 121

Query: 126 KLLPRKKFGFKKVDKVKL-GGQGDKTDEAEKKILPKDDVDFVKPRQHEE-------ETYI 177
           KLLP+KKFGFK    VK    +G    +  K +   + +     +Q+ +       +   
Sbjct: 122 KLLPKKKFGFKNRRVVKKPSDKGHDITDGLKDLKISEGIVNGSTKQNNKLLSSKYGDNAC 181

Query: 178 GFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSV 237
               ++NE L L +E+V+K  V LS++  C +++ G  ST+H+ N+K   + +GPV++SV
Sbjct: 182 MLLGKTNEQLVLDAENVNKNDVLLSDLVHCTIRIYGTPSTLHMVNLKQCTVLVGPVTSSV 241

Query: 238 FIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
           F  +C++     AC QLR+H+S  C++YLHVTSR IIE C  I  AP
Sbjct: 242 FAHDCSECAFAFACQQLRLHSSTDCTIYLHVTSRAIIEDCTKIRVAP 288

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784224|ref|XP_003250415.1| PREDICTED: tubulin-specific chaperone C-like isoform 1 [Apis mellifera] gi|328784226|ref|XP_003250416.1| PREDICTED: tubulin-specific chaperone C-like isoform 2 [Apis mellifera]

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/286 (33%), Positives = 159/286 (55%), Gaps = 18/286 (6%)

Query: 11  EVNIPERLLKREQERISAIEKRQEKKGD-----KEHDGFSNMFNENYDKIKGMINEIDVD 65
           E ++P+R+ KR++ER + IE+R+E++       ++   F + F  +  +IK M+++    
Sbjct: 8   EGSLPDRITKRDRERKNVIERRREERQSLAVESEQSSYFKDTFYSSCKQIKDMLDDASNA 67

Query: 66  PNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILET 125
           P S       L   F  INK+I +L + +  +K+FL  YD++     LQ L  + + LE 
Sbjct: 68  PISA------LPGIFDKINKEIQMLKNYLSQSKMFLKVYDIRRAQENLQLLETEASDLEI 121

Query: 126 KLLPRKKFGFK--KVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIG----- 178
           KLLP+KKFGFK  +V K       D TD  +   + +  V+    + H+  +  G     
Sbjct: 122 KLLPKKKFGFKNRRVVKKTSDKTHDMTDGLKDLKISEGIVNGSAKQNHKLSSKYGDSACM 181

Query: 179 FYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVF 238
              + NE L L +E+V+K  + LS++  C +++ G  ST+H+ N+K   + +GPV++SVF
Sbjct: 182 LLGKVNEQLVLDAENVNKNDILLSDLIRCTIRIYGTPSTLHMVNLKQCTVLVGPVTSSVF 241

Query: 239 IDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
             +C +     AC QLR+H+S  C++Y+HVTSR IIE C  I  AP
Sbjct: 242 AHDCNECVFAFACQQLRLHSSIDCTIYIHVTSRSIIEDCTKIRVAP 287

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714763|ref|XP_003395894.1| PREDICTED: tubulin-specific chaperone C-like [Bombus terrestris]

 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 98/286 (34%), Positives = 157/286 (54%), Gaps = 18/286 (6%)

Query: 11  EVNIPERLLKREQERISAIEKRQEKKGD-----KEHDGFSNMFNENYDKIKGMINEIDVD 65
           E ++P+R+ KR++ER + IE+R+E++       ++   F + F  +  KIK M+++    
Sbjct: 8   EGSLPDRISKRDRERKNIIERRREERQSLAVESEQSSYFKDTFYSSCKKIKEMLDDAPSA 67

Query: 66  PNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILET 125
           P         L   F  INK+I  L + +  +K+FL  YD++     LQ L  + + LE 
Sbjct: 68  PTPA------LPGIFDKINKEIQTLKNYLSQSKMFLKVYDIRRAQENLQLLENEASELEV 121

Query: 126 KLLPRKKFGFK--KVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIG----- 178
            LLP+KKFGFK  +V K       D TD  +   + +  V+    + H+  +  G     
Sbjct: 122 TLLPKKKFGFKNRRVVKKTSDKTHDMTDGLKDLKISEGIVNGSAKQNHKLSSKYGDSALM 181

Query: 179 FYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVF 238
              + NE L L +E+V+K  + LS++  C V++ G  ST+H+ N+K   + +GPV++SVF
Sbjct: 182 LLGKVNEQLILDAENVNKNDILLSDLIHCTVRIYGTPSTLHMVNLKECTVLVGPVTSSVF 241

Query: 239 IDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
             +C++     AC QLR+H+S  C++YLHVTSR IIE C  I  AP
Sbjct: 242 AHDCSECVFAFACQQLRLHSSTDCTIYLHVTSRSIIEDCTKIRVAP 287

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547691|ref|XP_001604825.1| PREDICTED: tubulin-specific chaperone C-like isoform 1 [Nasonia vitripennis] gi|345484962|ref|XP_003425165.1| PREDICTED: tubulin-specific chaperone C-like isoform 2 [Nasonia vitripennis]

 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 155/288 (53%), Gaps = 20/288 (6%)

Query: 11  EVNIPERLLKREQERISAIEKRQEKKG-----DKEHDGFSNMFNENYDKIKGMINEIDVD 65
           E ++ ER+ KR++ER + IEKR+E+K       ++   F + F      I+ +++  +  
Sbjct: 8   EESLSERINKRDRERKNVIEKRKEEKQHLIVETEQASYFKDAFYSTCKTIRDLLDSAESV 67

Query: 66  PNSGSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILET 125
           P S       L E F   NK I++L + + ++KIFL  YD++     LQ L      LE 
Sbjct: 68  PAST------LSEIFDKANKDIMMLKNYLFESKIFLKVYDIRKAQETLQILENDAAQLEA 121

Query: 126 KLLPRKKFGFK--KVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIGFYNRS 183
           KL+PRKKFGFK  +V K       D TD  +   + +        +Q+ ++ Y  + + +
Sbjct: 122 KLVPRKKFGFKNRRVIKKTADKPSDVTDGLKDLKIAESIATNGVGKQNNKQNYSKYGDNT 181

Query: 184 NETLE-------LPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNS 236
              LE       L +E+V+K  V LS++  C V++ G  +T+H+ ++    + +GPV+ S
Sbjct: 182 CMLLEKVGEKIVLDAENVNKNDVLLSDLTRCTVRIYGTPNTLHMVSLVQCTVLIGPVTTS 241

Query: 237 VFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
           VF+D+C D     AC QLR+HTS  C++YLHVTSR IIE C  I  AP
Sbjct: 242 VFVDDCRDCDFAFACQQLRLHTSTNCTIYLHVTSRAIIEDCTKIRVAP 289

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
UNIPROTKB|Q3SZE9	345	TBCC "Tubulin-specific chapero	0.857	0.750	0.305	5.6e-29
UNIPROTKB|F1RUS8	344	TBCC "Uncharacterized protein"	0.864	0.758	0.297	7.1e-29
MGI|MGI:1919976	341	Tbcc "tubulin-specific chapero	0.864	0.765	0.304	7.1e-29
UNIPROTKB|E2RDK4	345	TBCC "Uncharacterized protein"	0.864	0.756	0.299	9.1e-29
RGD|1306756	340	Tbcc "tubulin folding cofactor	0.847	0.752	0.296	2.4e-28
UNIPROTKB|Q15814	346	TBCC "Tubulin-specific chapero	0.860	0.751	0.284	2.2e-27
UNIPROTKB|Q5R5J7	346	TBCC "Tubulin-specific chapero	0.860	0.751	0.284	2.2e-27
FB|FBgn0051961	355	CG31961 [Drosophila melanogast	0.844	0.718	0.278	1.6e-24
TAIR|locus:2140089	345	POR "PORCINO" [Arabidopsis tha	0.857	0.750	0.291	1.4e-23
UNIPROTKB|F1NHK7	188	TBCC "Uncharacterized protein"	0.354	0.569	0.355	2.3e-16

UNIPROTKB|Q3SZE9 TBCC "Tubulin-specific chaperone C" [Bos taurus (taxid:9913)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 85/278 (30%), Positives = 140/278 (50%)

Query:    14 IPERLLKREQERISAIEKRQEKKGDKE-HDGFSNMFNENYDKIKGMINEIDVDPNSGSVN 72
             +PERL KRE ER   +E+R++K+ D+E  +  S+ F   + + +  + E+     SG  +
Sbjct:    25 VPERLQKREHERQLEVERRKQKRQDQEVEEEKSDFFAAAFARERSAVEEL---LESGE-S 80

Query:    73 KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRXX 132
              E L+E  A +     L+N    D+ +FL +YD++     L  L         +L P+  
Sbjct:    81 VERLEEAAARLQGLQKLIN----DSVLFLAAYDLRQAQEVLARLQAALAKRRQELQPKKR 136

Query:   133 XXXXXXXXXXXXXQGDKTDEAEKKILPKDDVDFVKPRQHEEE-----TYI-GFYNRSNET 186
                              T  A     P  +     P   +EE     ++I GF N  ++ 
Sbjct:   137 FAFKTRKKDAASA----TQVASAPDAPAAEGSLTSPPPLKEEGDFDSSWICGFSNLQSQV 192

Query:   187 LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDST 246
             LE  +E++H++ V L+ + +C +K+ GN +T+ L   +   +  GPVS SVF+++C+D  
Sbjct:   193 LEKRAEELHQQDVLLTQLRNCTIKLYGNPNTLRLTKAQGCTLLCGPVSTSVFLEDCSDCV 252

Query:   247 LYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
             L +AC QLR+HT+    ++L VTSR I+E C  I FAP
Sbjct:   253 LAVACQQLRVHTTKDTRIFLQVTSRAIMEDCTGIQFAP 290

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0032391 "photoreceptor connecting cilium" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0000902 "cell morphogenesis" evidence=IEA

UNIPROTKB|F1RUS8 TBCC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 82/276 (29%), Positives = 141/276 (51%)

Query:    14 IPERLLKREQERISAIEKRQEKKGDKE-HDGFSNMFNENYDKIKGMINEIDVDPNSGSVN 72
             +PERL +REQER   +E+R++K+ ++E  +  S+ F   + + +  + E+      G  +
Sbjct:    24 VPERLQRREQERQLEVERRKQKRQNEEVEEEKSDFFAAAFARERSAVEEL----LEGGES 79

Query:    73 KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRXX 132
              E+L+E  A +     L+N    D+ +FL +YD++     L  L         +L P+  
Sbjct:    80 VEKLEEAAARLQGLQKLIN----DSVLFLAAYDLRQGQEVLARLQAALAKRRQELQPKKR 135

Query:   133 XXXXXXXXXXXXXQGDKTDEAEKKILPKDDVDFVKPRQHE---EETYI-GFYNRSNETLE 188
                             K D A         +    P + E   + +++ GF N  +E LE
Sbjct:   136 FAFKTRRKDIASAT--KVDSAPGAPAADGILASSPPLKEEGGFDSSWVCGFSNLQSEVLE 193

Query:   189 LPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLY 248
               ++++H++ V L+ + +C +K+ GN +T+ L   +   +  GPVS SVF+++C+D  L 
Sbjct:   194 KRADELHQRDVLLTQLSNCTIKLYGNPNTLRLTKARGCTLLCGPVSTSVFLEDCSDCVLA 253

Query:   249 LACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
             +AC QLR+HT+    V+L VTSR I+E C  I FAP
Sbjct:   254 VACQQLRVHTTKDTRVFLLVTSRAIVEDCTGIQFAP 289

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

MGI|MGI:1919976 Tbcc "tubulin-specific chaperone C" [Mus musculus (taxid:10090)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 83/273 (30%), Positives = 135/273 (49%)

Query:    14 IPERLLKREQERISAIEKRQEKKGDKE-HDGFSNMFNENYDKIKGMINEIDVDPNSGSVN 72
             +PERL +REQER   +E+R++K+ D+E  +  S  F   + + +  + E+      G  +
Sbjct:    24 VPERLQRREQERQIEVERRKQKRQDQEVEEEKSGFFAAAFARERAAVEEL----LRGEAS 79

Query:    73 KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRXX 132
              E L+E    +     LLN    D+ +FL +YD++     L +L         +L P+  
Sbjct:    80 AERLEEAANRLQGLRKLLN----DSVLFLAAYDLRQGQAALAQLQAVLTERRQELQPKKR 135

Query:   133 XXXXXXXXXXXXXQGDKTDEAE-KKILPKDDVDFVKPRQHEEETYIGFYNRSNETLELPS 191
                             + D A      P   V   +          GF N  ++ LE  +
Sbjct:   136 FAFKARKKDAAGTA--QVDAAPVTSAAPSPPVTKEEEGAPGASWACGFSNLESQDLEKRA 193

Query:   192 EDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLAC 251
             E++H++ V LS++ +C VK+ GN +T+ L   +  ++  GPV+ SVF+++C D  L +AC
Sbjct:   194 EELHQRDVLLSDLTNCTVKLCGNPNTLRLAKARGCKVLCGPVTTSVFLEDCRDCVLAVAC 253

Query:   252 HQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
              QLR+HT+    V+L VTSR I+E C  I FAP
Sbjct:   254 QQLRVHTTKDTRVFLQVTSRAIVEDCSGIQFAP 286

GO:0003924 "GTPase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=ISO

GO:0032391 "photoreceptor connecting cilium" evidence=ISO

UNIPROTKB|E2RDK4 TBCC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 83/277 (29%), Positives = 140/277 (50%)

Query:    14 IPERLLKREQERISAIEKRQEKKGDKE-HDGFSNMFNENYDKIKGMINEIDVDPNSGSVN 72
             +PERL +REQER   +E+R++K+ ++E  +  S+ F   + + +  + E+     SG  +
Sbjct:    24 VPERLQRREQERQLEVERRKQKRQNQEVEEEKSDFFAAAFARERAAVEEL---LESGE-S 79

Query:    73 KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRXX 132
              E+L E  A +     L+N    DA +FL +YD++     L  L  Q  + E +   +  
Sbjct:    80 MEQLDEAAARLQGLQKLVN----DAVLFLAAYDLRQGQEALTRL--QATLAERRQELQPK 133

Query:   133 XXXXXXXXXXXXXQGDKTDEAEKKILPKDDVDFVKPRQHEE----ETYI-GFYNRSNETL 187
                               D A      +  + F  P + E       ++ GF N  ++ L
Sbjct:   134 KRFAFKTRRKDAVSATTVDAAPGPAAAEGILAFPPPLKEEGGGIGSGFVFGFSNVESQVL 193

Query:   188 ELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTL 247
             E  +E++H++ V L+ +  C V++ GN +T+ L   +   +  GPVS SVF+++C+D  L
Sbjct:   194 EKRAEELHQRDVLLTELSKCTVRLYGNPNTLRLAKARGCTLLCGPVSTSVFLEDCSDCVL 253

Query:   248 YLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
              +AC QLR+HT+    ++L VTSR I+E C  I FAP
Sbjct:   254 AVACQQLRVHTTRDTRIFLQVTSRAIVEDCSGIQFAP 290

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0000902 "cell morphogenesis" evidence=IEA

RGD|1306756 Tbcc "tubulin folding cofactor C" [Rattus norvegicus (taxid:10116)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 82/277 (29%), Positives = 136/277 (49%)

Query:    14 IPERLLKREQERISAIEKRQEKKGDKE-HDGFSNMFNENYDKIKGMINEIDVDPNSGSVN 72
             +PERL +REQER   +E+R++K+ D+E  +  S  F   + + +    E+      G  +
Sbjct:    24 VPERLQRREQERQMEVERRKQKRQDQEVEEEKSGFFAAAFARERAAAEEL----LQGEAS 79

Query:    73 KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRXX 132
              E L+E    +     LLN    D+ +FL +YD++     L +L         +L P+  
Sbjct:    80 AERLEEAANRLQALRKLLN----DSVLFLAAYDLRQGQAALAQLQSVLTERRQELQPKKR 135

Query:   133 XXXXXXXXXXXXXQGDKTDEAEKKILPKDDVDFVKPRQHEEET-----YIGFYNRSNETL 187
                          + D    A+    P        P   EE         GF N  ++ L
Sbjct:   136 FAFKAR-------KKDAAGTAQVDAAPVTSAAPSPPLTEEEGAPGASWACGFSNLESQDL 188

Query:   188 ELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTL 247
             E  +E++H++ + LS++ +C V++ GN +T+ L   +  ++  GPV+ SVF+++C D  L
Sbjct:   189 EKRAEELHQRDILLSDLTNCTVRLRGNPNTLRLAKARGCKVLCGPVTTSVFLEDCRDCIL 248

Query:   248 YLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
              +AC QLR+HT+    ++L VTSR I+E C  I FAP
Sbjct:   249 AVACQQLRVHTTKDTRIFLQVTSRAIVEDCSGIQFAP 285

GO:0003924 "GTPase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=ISO

GO:0032391 "photoreceptor connecting cilium" evidence=ISO

UNIPROTKB|Q15814 TBCC "Tubulin-specific chaperone C" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 79/278 (28%), Positives = 145/278 (52%)

Query:    14 IPERLLKREQERISAIEKRQEKKGDKEHDGF-SNMFNENYDKIKGMINEIDVDPNSGSVN 72
             +PERL +REQER   +E+R++K+ ++E +   S+ F   + + +  + E+        + 
Sbjct:    25 VPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVATFVRERAAVEEL--------LE 76

Query:    73 KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRXX 132
             + E  E+  +   ++  L  +I D+  FL +YD++     L  L  Q  + E +   +  
Sbjct:    77 RAESVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARL--QAALAERRRGLQPK 134

Query:   133 XXXXXXXXXXXXXQGDKTDEAEKKILPK-DDV-DFVKPRQHEEE---TYI-GFYNRSNET 186
                             K D A   I P  + + D   P++ E +   +++ GF N  ++ 
Sbjct:   135 KRFAFKTRGKDAASSTKVDAAPG-IPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQV 193

Query:   187 LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDST 246
             LE  + ++H++ V L+ + +C V++ GN +T+ L    + ++  GPVS SVF+++C+D  
Sbjct:   194 LEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCV 253

Query:   247 LYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
             L +AC QLR+H++    ++L VTSR I+E C  I FAP
Sbjct:   254 LAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAP 291

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0032391 "photoreceptor connecting cilium" evidence=IDA

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0051087 "chaperone binding" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0005874 "microtubule" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA

UNIPROTKB|Q5R5J7 TBCC "Tubulin-specific chaperone C" [Pongo abelii (taxid:9601)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 79/278 (28%), Positives = 144/278 (51%)

Query:    14 IPERLLKREQERISAIEKRQEKKGDKEHDGF-SNMFNENYDKIKGMINEIDVDPNSGSVN 72
             +PERL +REQER   +E+R++K+ ++E +   S+ F   + + +  + E+        + 
Sbjct:    25 VPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFAATFARERAAVEEL--------LE 76

Query:    73 KEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRXX 132
             + E  E+  +   ++  L  +I D+  FL +YD++     L  L         +L P+  
Sbjct:    77 RAESVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRELQPKKR 136

Query:   133 XXXXXXXXXXXXXQGDKTDEAEKKILPK-DDV-DFVKPRQHEEE---TYI-GFYNRSNET 186
                             K D A   I P  + + D   P++ E +   +++ GF N  ++ 
Sbjct:   137 FAFKTRGKDAASCT--KVDAAPG-IPPAVESIQDSPLPKKAEGDLGSSWLCGFSNLESQV 193

Query:   187 LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDST 246
             LE  + ++H++ V L+ + +C V++ GN +T+ L    + ++  GPVS SVF+++C+D  
Sbjct:   194 LEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCV 253

Query:   247 LYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
             L +AC QLR+H++    ++L VTSR I+E C  I FAP
Sbjct:   254 LAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAP 291

GO:0003924 "GTPase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=ISS

GO:0032391 "photoreceptor connecting cilium" evidence=ISS

FB|FBgn0051961 CG31961 [Drosophila melanogaster (taxid:7227)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 76/273 (27%), Positives = 134/273 (49%)

Query:    14 IPERLLKREQERISAIEKRQEKKGDK--EHDGFSNMFNENYDKIKGMINEIDVDPNSGSV 71
             I ERL KR ++R + ++ + E +  +  +++G  + F + + +    I +   D   G  
Sbjct:    12 ILERLNKRNKDRQNYLDVKSELRSKETVQNEGV-DYFYQTFSQKTMDIEQRLKDVQCGDG 70

Query:    72 NKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRX 131
                +L   FADI  +I  L   +  + +FL  + +K   N L  LT   +    +LLP+ 
Sbjct:    71 QPTDLARNFADITVEIQDLQRYLTASTMFLPDFKIKSCQNILNTLTAVSDETRQRLLPKK 130

Query:   132 XXXXXXXXXXXXXXQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIGFY----NRSNETL 187
                            G KT   + K+ P  D+   K  +  E+    F     NR+NE +
Sbjct:   131 KFGFS----------GKKT-VTKPKVPPNKDIVDAKLSKVPEKLGSNFTWTIANRTNEHI 179

Query:   188 ELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTL 247
              L S  V+ + +++S ++ C+V++ G+  ++ ++      +  GP++ S F +N  D TL
Sbjct:   180 VLDSAKVNGQDITISKLNHCLVELQGHPGSVQVSRASKCTLLCGPIARSFFAENLEDCTL 239

Query:   248 YLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNI 280
              +AC QLR+H+S    +Y+HVT R IIE CK+I
Sbjct:   240 SIACQQLRLHSSRSIRIYMHVTCRAIIEDCKSI 272

GO:0007021 "tubulin complex assembly" evidence=ISS

GO:0000902 "cell morphogenesis" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

TAIR|locus:2140089 POR "PORCINO" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 79/271 (29%), Positives = 125/271 (46%)

Query:    16 ERLLKREQERIS-AIEKRQEKKGDKEH-DGFSNMFNENYDKIKGMINEIDVDPNSGSVNK 73
             ERL  R Q R S + +         E    F   F+++   I+  I E  +   S S + 
Sbjct:    26 ERLSARHQARKSDSPDSSSSSSSTLESTSSFLAKFSDSKRSIESRIAESRLA--SSSTDS 83

Query:    74 EELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRXXX 133
              +LK   A+I+  I  L  ++ +   FL SY+++     + +L +  +IL  +L+P+   
Sbjct:    84 SKLKSDLAEISVAIDNLEKLLAENSYFLPSYEVRSSLKIVSDLKQSLDILSGELVPKKKF 143

Query:   134 XXXXXXXXXXXXQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIGFYNRSNETLELPSED 193
                            K  E++   + K DV  + P+        G  N+  ETL    E 
Sbjct:   144 SFKSKSTT-------KKPESKLPEIQKPDV-VLPPKLVPVRDSPGLRNKHGETLVKSFEG 195

Query:   194 VHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQ 253
                   +LS++DSC VK+ G  + + L+ +K   ++ GPV  S+ ID+  D  L LA HQ
Sbjct:   196 SSIGEFTLSDLDSCQVKLTGTVNALFLHRLKKCSVYTGPVIGSILIDDVEDCVLVLASHQ 255

Query:   254 LRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
             +R+H + K   YL V SRPIIE    + FAP
Sbjct:   256 IRIHCARKSDFYLRVRSRPIIEDSNGVRFAP 286

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0000910 "cytokinesis" evidence=IGI

GO:0007021 "tubulin complex assembly" evidence=IGI;ISS

UNIPROTKB|F1NHK7 TBCC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 38/107 (35%), Positives = 57/107 (53%)

Query:   178 GFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSV 237
             GF       LEL   ++ +  V L  +  C V++ GN +T+ +   +   +  GPVS SV
Sbjct:    27 GFSRAEGRELELGPAELLQHDVVLEELRGCQVRLRGNPNTLRVRECRGCTVLCGPVSTSV 86

Query:   238 FIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
              +D C++  L +AC QLR H +     Y+ VTSR +IE C  + FAP
Sbjct:    87 LVDGCSECQLVVACQQLRTHRTRGSRFYVQVTSRAVIEDCSEVSFAP 133

GO:0000902 "cell morphogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q15814	TBCC_HUMAN	No assigned EC number	0.3021	0.8609	0.7514	yes	N/A
Q8VCN9	TBCC_MOUSE	No assigned EC number	0.3129	0.8476	0.7507	yes	N/A
Q5R5J7	TBCC_PONAB	No assigned EC number	0.3021	0.8609	0.7514	yes	N/A
Q9SMR2	TBCC_ARATH	No assigned EC number	0.3153	0.7649	0.6695	yes	N/A
Q3SZE9	TBCC_BOVIN	No assigned EC number	0.3093	0.8576	0.7507	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	302
pfam07986	119	pfam07986, TBCC, Tubulin binding cofactor C	2e-38
smart00673	38	smart00673, CARP, Domain in CAPs (cyclase-associat	0.001

>gnl|CDD|219683 pfam07986, TBCC, Tubulin binding cofactor C

 Score =  131 bits (332), Expect = 2e-38
 Identities = 41/87 (47%), Positives = 56/87 (64%)

Query: 198 PVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMH 257
            V+LSN+ +C + +    S++ ++N K+  I LGPVS SVFI +C + T+ +AC QLR+H
Sbjct: 3   DVTLSNLSNCTIYLLDPLSSLTIDNCKDCTIILGPVSGSVFIRDCENCTIVVACRQLRIH 62

Query: 258 TSHKCSVYLHVTSRPIIEHCKNIGFAP 284
               C  YLH TSRPIIE    I FAP
Sbjct: 63  DCTNCDFYLHTTSRPIIEDSSGIRFAP 89

Members of this family are involved in the folding pathway of tubulins and form a beta helix structure. Length = 119

>gnl|CDD|197827 smart00673, CARP, Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 204 IDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDN 241
            +SC ++V+G  +TI ++  K   I+LGPVS S  I N
Sbjct: 1   CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIVN 38

Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG2512|consensus	337		100.0
PF07986	120	TBCC: Tubulin binding cofactor C; InterPro: IPR012	100.0
KOG4416|consensus	605		99.52
PF07986	120	TBCC: Tubulin binding cofactor C; InterPro: IPR012	98.69
KOG2512|consensus	337		98.57
smart00673	38	CARP Domain in CAPs (cyclase-associated proteins)	98.29
PF08603	159	CAP_C: Adenylate cyclase associated (CAP) C termin	97.79
smart00673	38	CARP Domain in CAPs (cyclase-associated proteins)	97.31
KOG2675|consensus	480		97.19
PF08603	159	CAP_C: Adenylate cyclase associated (CAP) C termin	95.62
KOG4416|consensus	605		94.45
KOG2675|consensus	480		88.49
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	80.64

>KOG2512|consensus

Probab=100.00  E-value=3.7e-41  Score=311.95  Aligned_cols=265  Identities=31%  Similarity=0.413  Sum_probs=217.7

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHH---hhhcccchHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHH
Q psy4604          11 EVNIPERLLKREQERISAIEKRQ---EKKGDKEHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQI   87 (302)
Q Consensus        11 ~~~~~erl~~r~~~R~~~~~~~r---~~~~~~~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i   87 (302)
                      +-.|+|||.+|+++|++..+.+.   .....+++++|..+|..+..+||++|+.-           ..+...++++...|
T Consensus        17 ~~~~~erl~kr~~drr~~v~~~~~~~s~~k~Es~~~f~~tf~~~t~~ie~~l~~~-----------~~l~~~l~e~tv~I   85 (337)
T KOG2512|consen   17 KKNELERLKKRSWDRREKVDPKDRSNSTLKKESVDRFPATFAGSTADIEERLNEN-----------EYLERFLEEATVTI   85 (337)
T ss_pred             hhhhhcccchhhhhhhhcCChhhhhhhhhhhhhhhhhhHhHhccchhHHHHHHHH-----------HHHHHHHHHhHhHH
Confidence            35599999999999999987766   12222399999999999999999999841           22345789999999


Q ss_pred             HHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccCCcccCCCCCCCCcchhhc------CCCCC
Q psy4604          88 LLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRKKFGFKKVDKVKLGGQGDKTDEAEKK------ILPKD  161 (302)
Q Consensus        88 ~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~~~~pkkKF~Fk~k~~~~~~~~~~~~~~~~~~------~~~~~  161 (302)
                      ..|++.+++..+|||+|+.|.|++.+..|...+...|..++|||+|.|+...+-.         +.+++      ..+..
T Consensus        86 ddl~~~l~~~~~fl~sy~vR~c~~~l~~Lt~~l~~~R~dl~pkk~F~f~~t~~~v---------kSStki~fa~~~Pe~k  156 (337)
T KOG2512|consen   86 DDLTRCLIELGPFLGSYFVRSCQNCLCTLTCQLDRTRHDLLPKKKFLFCATGPIV---------KSSTKIKFAPYYPELK  156 (337)
T ss_pred             HHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhcccccceeeeccCCccc---------ccccccccccCCCcch
Confidence            9999999999999999999999999999999999999999999999999754310         11111      00111


Q ss_pred             CCCCCCCCC----CCCC---ceeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEcccc
Q psy4604         162 DVDFVKPRQ----HEEE---TYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVS  234 (302)
Q Consensus       162 ~~~~~~~~~----~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~  234 (302)
                      +...+.+-+    ...+   -.+...|..+.++.  .+.+...+++++.|.+|.|.|.|+++++++++.++|.+++||+.
T Consensus       157 ~~~~dapl~~f~ndl~pv~~~~~~~~n~e~~vl~--~p~~~~~~~~~~~l~~c~v~l~g~~~a~~l~ratkcs~l~~p~~  234 (337)
T KOG2512|consen  157 DQIKDAPLSKFPNDLGPVSGWTPANRNPEDNVLV--VPEVTQEEVTASELSSCAVRLIGPPSAVFLHRATKCSLLCGPFA  234 (337)
T ss_pred             hhhhhCCCccCCccccccccccccccCCCCceEE--cCCcccchhhHHHhhhcceeEecCCCcceeccccccccccCcee
Confidence            111111111    1111   14455666666666  55577899999999999999999999999999999999999999


Q ss_pred             ceEEEEcCCCCeEEEEeceEeeccceeeeEEEEecCCcEEecCCCcEEeeCCCCChhHHHhhh
Q psy4604         235 NSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLLQLSS  297 (302)
Q Consensus       235 Gsv~i~~c~n~~i~~~c~QlRih~~~n~~~yl~~~s~pIIEdC~~i~f~py~~~Y~~l~~~l~  297 (302)
                      ||+|++||.+|++.++|||||+|.+++++||++|+++||||||++|.|+||.+.||+|+.++-
T Consensus       235 gsi~~~d~~D~~l~~ac~qlrlh~tk~~rv~l~~~~r~iiedsk~i~Fapy~~~~p~i~~d~~  297 (337)
T KOG2512|consen  235 GSIFISDAEDCTLEVACHQLRLHSTKEVRVYLRVTSRPIIEDSKGIDFAPYLNDYPVIDLDFN  297 (337)
T ss_pred             eeeeccchHHHHHHHHHhheeeEeeccceEEEEecccceeecccCCcchhhhhcCchhhhhcc
Confidence            999999999999999999999999999999999999999999999999999999999988765

>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC)

Probab=100.00  E-value=6.4e-34  Score=234.64  Aligned_cols=104  Identities=44%  Similarity=0.782  Sum_probs=86.3

Q ss_pred             CCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEeceEeeccceeeeEEEEecCCcEEe
Q psy4604         196 KKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIE  275 (302)
Q Consensus       196 ~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~QlRih~~~n~~~yl~~~s~pIIE  275 (302)
                      |.++.|+||++|+|++.+++++++|+||+||+|++|||.|||+|++|.||+|+++|+|||+|+|+||.||++++++||||
T Consensus         1 g~~~~i~n~~~c~I~l~~~~~~v~i~~~~~c~i~~g~v~gsv~i~~c~n~~i~~~~~QlRih~~~n~~~~l~~~s~piIE   80 (120)
T PF07986_consen    1 GSDVTISNCSNCTIYLLDPLSSVHIDNCKNCTIVLGPVSGSVFIENCENCTIIVACRQLRIHNSTNCTFYLHTNSRPIIE   80 (120)
T ss_dssp             T-EEEEES-BS-EEEE-S-BS-EEEES-BS-EEEEEEECCEEEEES-ECEEEEEEECEEEEES-ECEEEEEEESSEEEEE
T ss_pred             CCcEEEecCcCCEEEeCCCcceEEEeCCCCCEEEEeecCceEEEecCCceEEEEEcCCeEEccccceEEEEECCCCcEEe
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcEEeeCCCCChhHHHhhhcc
Q psy4604         276 HCKNIGFAPAVNIDPVLLQLSSTT  299 (302)
Q Consensus       276 dC~~i~f~py~~~Y~~l~~~l~~~  299 (302)
                      +|++|+||||+..||++++||...
T Consensus        81 ~~~~i~fapy~~~y~~l~~~l~~~  104 (120)
T PF07986_consen   81 DCTGITFAPYNTHYPNLEEHLQRA  104 (120)
T ss_dssp             S-ECEEEEE---B-TTCHHHHHHC
T ss_pred             CCCCCEEEeCcccCcCHHHHHHHc
Confidence            999999999999999999998753

TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.

>KOG4416|consensus

Probab=99.52  E-value=2.3e-14  Score=139.34  Aligned_cols=124  Identities=18%  Similarity=0.293  Sum_probs=117.3

Q ss_pred             eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEeceEe
Q psy4604         176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLR  255 (302)
Q Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~QlR  255 (302)
                      .+.+.+...+++.++.....+.++.|-||.++.|||..++.++.+..|.|+++++|++...+.+++|++..++++|+-|-
T Consensus       314 ~~~~~gV~k~Sl~k~a~~lkg~sVkv~~Cnes~iyLl~plr~~tv~~c~~s~~Vlg~agkt~~~h~c~rV~vi~~~~Ri~  393 (605)
T KOG4416|consen  314 PCNIEGVSKTSLIKQASDLKGRSVKVPNCNESVIYLLAPLRYATVFGCSDSTIVLGAAGKTTKVHHCERVHVIVAIKRIC  393 (605)
T ss_pred             ccccccccccccccchhhhccceeeecccchhhhhhhcCcceeeeeccCCceEEEecccceeeeccccceEEEEEeeeEE
Confidence            56777788888999988888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccceeeeEEEEecCCcEE-ecCCCcEEeeCCCCChhHHHhhhcc
Q psy4604         256 MHTSHKCSVYLHVTSRPII-EHCKNIGFAPAVNIDPVLLQLSSTT  299 (302)
Q Consensus       256 ih~~~n~~~yl~~~s~pII-EdC~~i~f~py~~~Y~~l~~~l~~~  299 (302)
                      |-+|+.|.||+.|.+||.| .+-..++|+||+..|+-|++||.+.
T Consensus       394 I~~~~ecvff~~v~~Rpli~~~n~~~~faP~~t~y~~Le~hM~~~  438 (605)
T KOG4416|consen  394 IANCRECVFFLGVNQRPLIVGDNHKLQFAPYNTFYSHLEEHMYEV  438 (605)
T ss_pred             EecccceEEEeccCcceeeecCCceEEEeccccchHHHHHHHHhh
Confidence            9999999999999999955 7999999999999999999999764

>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC)

Probab=98.69  E-value=8.9e-08  Score=78.89  Aligned_cols=95  Identities=21%  Similarity=0.289  Sum_probs=69.9

Q ss_pred             eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEec-eE
Q psy4604         176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACH-QL  254 (302)
Q Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~-Ql  254 (302)
                      .+.++|.++-+|.+..   ..+.+.|.||+||+|.+....|+++|.+|.||+|++.  .+.+.|++|.||.|++.+. .-
T Consensus         3 ~~~i~n~~~c~I~l~~---~~~~v~i~~~~~c~i~~g~v~gsv~i~~c~n~~i~~~--~~QlRih~~~n~~~~l~~~s~p   77 (120)
T PF07986_consen    3 DVTISNCSNCTIYLLD---PLSSVHIDNCKNCTIVLGPVSGSVFIENCENCTIIVA--CRQLRIHNSTNCTFYLHTNSRP   77 (120)
T ss_dssp             EEEEES-BS-EEEE-S----BS-EEEES-BS-EEEEEEECCEEEEES-ECEEEEEE--ECEEEEES-ECEEEEEEESSEE
T ss_pred             cEEEecCcCCEEEeCC---CcceEEEeCCCCCEEEEeecCceEEEecCCceEEEEE--cCCeEEccccceEEEEECCCCc
Confidence            4678899998888743   2578999999999999977779999999999999864  6899999999999999766 67


Q ss_pred             eeccceeeeEEEEecCCcEEe
Q psy4604         255 RMHTSHKCSVYLHVTSRPIIE  275 (302)
Q Consensus       255 Rih~~~n~~~yl~~~s~pIIE  275 (302)
                      .|.+|+++.|.=+...-|-+|
T Consensus        78 iIE~~~~i~fapy~~~y~~l~   98 (120)
T PF07986_consen   78 IIEDCTGITFAPYNTHYPNLE   98 (120)
T ss_dssp             EEES-ECEEEEE---B-TTCH
T ss_pred             EEeCCCCCEEEeCcccCcCHH
Confidence            789999999998766666554

TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.

>KOG2512|consensus

Probab=98.57  E-value=5.7e-10  Score=104.66  Aligned_cols=98  Identities=20%  Similarity=0.329  Sum_probs=83.1

Q ss_pred             CCeEEecccccEEEec--CCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEeceEeec-cceeeeEEEEecCCcE
Q psy4604         197 KPVSLSNIDSCVVKVN--GNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLRMH-TSHKCSVYLHVTSRPI  273 (302)
Q Consensus       197 ~~~~i~nl~~c~V~l~--~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~QlRih-~~~n~~~yl~~~s~pI  273 (302)
                      ....|+.+.+|..+|.  -...++.|.||++|++.+||.-||+++.+|.||+.-+.|+|+|+. +|.--..|+.+++.||
T Consensus        60 ~t~~ie~~l~~~~~l~~~l~e~tv~Iddl~~~l~~~~~fl~sy~vR~c~~~l~~Lt~~l~~~R~dl~pkk~F~f~~t~~~  139 (337)
T KOG2512|consen   60 STADIEERLNENEYLERFLEEATVTIDDLTRCLIELGPFLGSYFVRSCQNCLCTLTCQLDRTRHDLLPKKKFLFCATGPI  139 (337)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhcccccceeeeccCCcc
Confidence            3444555555555533  244799999999999999999999999999999999999999988 9999999999999999


Q ss_pred             EecCCCcEEeeCCCCChhHHHhhh
Q psy4604         274 IEHCKNIGFAPAVNIDPVLLQLSS  297 (302)
Q Consensus       274 IEdC~~i~f~py~~~Y~~l~~~l~  297 (302)
                      +|.+++|.|+||   ||.+.+++.
T Consensus       140 vkSStki~fa~~---~Pe~k~~~~  160 (337)
T KOG2512|consen  140 VKSSTKIKFAPY---YPELKDQIK  160 (337)
T ss_pred             cccccccccccC---CCcchhhhh
Confidence            999999999776   777766553

>smart00673 CARP Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product

Probab=98.29  E-value=1.4e-06  Score=57.31  Aligned_cols=38  Identities=42%  Similarity=0.725  Sum_probs=36.1

Q ss_pred             ccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEc
Q psy4604         204 IDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDN  241 (302)
Q Consensus       204 l~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~  241 (302)
                      |++|.|++.|.+.+++|++|++|.|+++|+.++++|.+
T Consensus         1 C~~~~i~v~g~~~~v~id~~~~~~i~l~~~~~s~~i~~   38 (38)
T smart00673        1 CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIVN   38 (38)
T ss_pred             CCcEEEEEeCccCEEEEECCCCeEEEECCceeEEEEEC
Confidence            68999999999999999999999999999999999875

>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals

Probab=97.79  E-value=4.8e-05  Score=65.87  Aligned_cols=106  Identities=19%  Similarity=0.356  Sum_probs=78.1

Q ss_pred             eeeEecccCcE-EecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEE--Eec
Q psy4604         176 YIGFYNRSNET-LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYL--ACH  252 (302)
Q Consensus       176 ~~~~~~~~~~~-i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~--~c~  252 (302)
                      .+.+.+..|.. +.+... .....+.|.+|.||+|.+.|...++.|.+|++|.+++..+-+++-+-+|.++.+.+  .|.
T Consensus        12 kW~Ve~~~~~~~~~~~~~-~~~qsVyI~~C~n~~i~IkgKvnsItid~C~k~~vv~ds~Is~vEvinc~~~~vQv~g~vP   90 (159)
T PF08603_consen   12 KWFVENQENNKELVIEEV-EMKQSVYIYNCKNSTIQIKGKVNSITIDNCKKCSVVFDSVISSVEVINCKSVQVQVLGKVP   90 (159)
T ss_dssp             EEEEECEBS-SSEEEEE---TT-EEEEEEEESEEEEEESEBSEEEEEEEEEEEEEECEBSSEEEEESEEEEEEEESS--S
T ss_pred             EEEEEeccCCCCceEecc-CCCcEEEEEcccccEEEECceEEEEEEEcCCcEEEEEcCEEEEEEEEecCcEeEEEEccCC
Confidence            56666666654 433322 23578999999999999999999999999999999999888999999999999888  577


Q ss_pred             eEeeccceeeeEEEEecC--CcEE-ecCCCcEE
Q psy4604         253 QLRMHTSHKCSVYLHVTS--RPII-EHCKNIGF  282 (302)
Q Consensus       253 QlRih~~~n~~~yl~~~s--~pII-EdC~~i~f  282 (302)
                      -+-+-.|.+|.+||.-.+  .-|+ --|+.|-+
T Consensus        91 ti~iDktdg~~iyLsk~s~~~eivtskss~mNv  123 (159)
T PF08603_consen   91 TISIDKTDGCQIYLSKESLDTEIVTSKSSEMNV  123 (159)
T ss_dssp             EEEEES-EEEEEE--CCCTT-EEEEES-EEEEE
T ss_pred             EEEEeccccEEEEECcccccEEEEEEccccEEE
Confidence            899999999999998654  2344 35555443

CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the C-terminal domain of CAP proteins, which is responsible for G-actin-binding. This domain has a superhelical structure, where the superhelix turns are made of two beta-strands each []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1K4Z_B 1KQ5_A 2B0R_A 1K8F_B.

>smart00673 CARP Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product

Probab=97.31  E-value=0.00026  Score=46.34  Aligned_cols=35  Identities=29%  Similarity=0.664  Sum_probs=30.9

Q ss_pred             CCCCeEEEE--eceEeeccceeeeEEEE-ecCCcEEec
Q psy4604         242 CTDSTLYLA--CHQLRMHTSHKCSVYLH-VTSRPIIEH  276 (302)
Q Consensus       242 c~n~~i~~~--c~QlRih~~~n~~~yl~-~~s~pIIEd  276 (302)
                      |.||.+.+.  |++++||+|.+|.||+. +.+.+.|++
T Consensus         1 C~~~~i~v~g~~~~v~id~~~~~~i~l~~~~~s~~i~~   38 (38)
T smart00673        1 CESCTIQVSGKVNTISIDKCKKCSIYLGPVSGSPEIVN   38 (38)
T ss_pred             CCcEEEEEeCccCEEEEECCCCeEEEECCceeEEEEEC
Confidence            789999998  99999999999999998 667777764

>KOG2675|consensus

Probab=97.19  E-value=0.0024  Score=62.74  Aligned_cols=106  Identities=19%  Similarity=0.359  Sum_probs=80.2

Q ss_pred             eeeEecccCc-EEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEe--c
Q psy4604         176 YIGFYNRSNE-TLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLAC--H  252 (302)
Q Consensus       176 ~~~~~~~~~~-~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c--~  252 (302)
                      .+.+.|..|. .+++... -....+.|-.|+||+|.|.|..-++.|+||+.|-|++-.+=|.+-|-||.+..|.+.-  .
T Consensus       333 kW~VEnq~~~~~~Vi~~~-e~kqsvyIykC~~s~iqIkGKvNsItld~Ckk~svVfD~~Va~~eiinc~~v~iQv~g~~P  411 (480)
T KOG2675|consen  333 KWRVENQENNKNLVIDDA-ELKQSVYIYKCSNSTIQIKGKVNSITLDNCKKTSVVFDDLVAIVEIINCQDVQIQVMGSVP  411 (480)
T ss_pred             eEEEeeecCCcceeeeec-cccceEEEEeccceEEEEeceeeeEEecCCceeeEEEeccceeeEEeeccceeeEEcccCC
Confidence            4445544443 3444332 2356899999999999999999999999999999999888888999999999888854  4


Q ss_pred             eEeeccceeeeEEEEecC--CcEE-ecCCCcEE
Q psy4604         253 QLRMHTSHKCSVYLHVTS--RPII-EHCKNIGF  282 (302)
Q Consensus       253 QlRih~~~n~~~yl~~~s--~pII-EdC~~i~f  282 (302)
                      +|-|..+.+|.+||.-.+  --|. -.++.|-+
T Consensus       412 tiSI~ktdGc~iYLSk~sL~~eIvtsKSsemNi  444 (480)
T KOG2675|consen  412 TISIDKTDGCHIYLSKDSLDCEIVTSKSSEMNI  444 (480)
T ss_pred             eEEEecCCCeeEEeccccccceEEeecccceeE
Confidence            999999999999997432  2244 34444443

>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals

Probab=95.62  E-value=0.035  Score=48.14  Aligned_cols=92  Identities=20%  Similarity=0.328  Sum_probs=69.6

Q ss_pred             eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEE--ece
Q psy4604         176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLA--CHQ  253 (302)
Q Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~--c~Q  253 (302)
                      ...|.+-.|.+|.+..   ....++|.+|++|.|.+.+..+++-+-||.++.|-+--.-..|.|+.|.+|.|++.  +..
T Consensus        34 sVyI~~C~n~~i~Ikg---KvnsItid~C~k~~vv~ds~Is~vEvinc~~~~vQv~g~vPti~iDktdg~~iyLsk~s~~  110 (159)
T PF08603_consen   34 SVYIYNCKNSTIQIKG---KVNSITIDNCKKCSVVFDSVISSVEVINCKSVQVQVLGKVPTISIDKTDGCQIYLSKESLD  110 (159)
T ss_dssp             EEEEEEEESEEEEEES---EBSEEEEEEEEEEEEEECEBSSEEEEESEEEEEEEESS--SEEEEES-EEEEEE--CCCTT
T ss_pred             EEEEEcccccEEEECc---eEEEEEEEcCCcEEEEEcCEEEEEEEEecCcEeEEEEccCCEEEEeccccEEEEECccccc
Confidence            6778888888888764   35789999999999999999999999999999988644446799999999999996  445


Q ss_pred             EeeccceeeeEEEEecC
Q psy4604         254 LRMHTSHKCSVYLHVTS  270 (302)
Q Consensus       254 lRih~~~n~~~yl~~~s  270 (302)
                      ..+..+....+.+++..
T Consensus       111 ~eivtskss~mNv~~p~  127 (159)
T PF08603_consen  111 TEIVTSKSSEMNVNVPD  127 (159)
T ss_dssp             -EEEEES-EEEEEEEEC
T ss_pred             EEEEEEccccEEEEecC
Confidence            56666666666666654

CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the C-terminal domain of CAP proteins, which is responsible for G-actin-binding. This domain has a superhelical structure, where the superhelix turns are made of two beta-strands each []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1K4Z_B 1KQ5_A 2B0R_A 1K8F_B.

>KOG4416|consensus

Probab=94.45  E-value=0.089  Score=52.66  Aligned_cols=52  Identities=19%  Similarity=0.168  Sum_probs=37.6

Q ss_pred             CCCCeEEEEeceEeeccceeeeEEEEecCCcEEecCCCcEEeeCCCCChhHH
Q psy4604         242 CTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLL  293 (302)
Q Consensus       242 c~n~~i~~~c~QlRih~~~n~~~yl~~~s~pIIEdC~~i~f~py~~~Y~~l~  293 (302)
                      |.--.+-..|||+=+.++.+..+|---.-.|||=+..-+.|.|||..|.|-.
T Consensus       454 c~~~~~~~~~~~~~vsDsq~~~~~~~~P~~~~~~~s~~v~~iPF~~e~eG~t  505 (605)
T KOG4416|consen  454 CASDPHDSLSHPLGVSDSQAEEAYAVDPDKPIIFNSFTVFFIPFNGEYEGST  505 (605)
T ss_pred             cccCccccccccccccccccccceecCCCCceeeeeeEEEEeeccchhcccc
Confidence            3333344445566666666766777667789999999999999999998753

>KOG2675|consensus

Probab=88.49  E-value=2.3  Score=42.43  Aligned_cols=51  Identities=24%  Similarity=0.419  Sum_probs=24.1

Q ss_pred             CeEEecccccEEEecCCcCeEEEeccCCCEEEE-ccccceEEEEcCCCCeEEE
Q psy4604         198 PVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFL-GPVSNSVFIDNCTDSTLYL  249 (302)
Q Consensus       198 ~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~-gpv~Gsv~i~~c~n~~i~~  249 (302)
                      .++|.||+.|-|.+.+..+.+-|-||.+-.|-+ |.+. .|.|+.|..|.|++
T Consensus       374 sItld~Ckk~svVfD~~Va~~eiinc~~v~iQv~g~~P-tiSI~ktdGc~iYL  425 (480)
T KOG2675|consen  374 SITLDNCKKTSVVFDDLVAIVEIINCQDVQIQVMGSVP-TISIDKTDGCHIYL  425 (480)
T ss_pred             eEEecCCceeeEEEeccceeeEEeeccceeeEEcccCC-eEEEecCCCeeEEe
Confidence            445555555555555444555555555444432 2222 24455555555554

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=80.64  E-value=21  Score=26.52  Aligned_cols=73  Identities=16%  Similarity=0.305  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhhhccCCCCCCCCch----hhHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH
Q psy4604          48 FNENYDKIKGMINEIDVDPNSGSVNK----EELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNIL  123 (302)
Q Consensus        48 F~~~~~~ie~~l~~~~~~~~~~~~~~----~~~~~~l~~i~~~i~~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~  123 (302)
                      |..-.+.|...|.++.   ...+.++    ......|+++..-|..|.-++..    +|+=+...|...|......+..+
T Consensus         1 f~~l~~~i~~~l~~~~---~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~----~p~s~r~~~~~kl~~yr~~l~~l   73 (79)
T PF05008_consen    1 FQALTAEIKSKLERIK---NLSGEQRKSLIREIERDLDEAEELLKQMELEVRS----LPPSERNQYKSKLRSYRSELKKL   73 (79)
T ss_dssp             HHHHHHHHHHHHHHGG---GS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhh---ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHHHHH
Confidence            6666778888888763   1111121    22233444445555555555443    59889999999999999999887


Q ss_pred             Hhhc
Q psy4604         124 ETKL  127 (302)
Q Consensus       124 r~~~  127 (302)
                      +..+
T Consensus        74 k~~l   77 (79)
T PF05008_consen   74 KKEL   77 (79)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7643

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
2yuh_A	179	Solution Structure Of The C-Terminal Region In Huma		2e-21
3bh6_B	352	Crystal Structure Of The Rp2-Arl3 Complex Bound To		3e-12
2bx6_A	350	Crystal Structure Of The Human Retinitis Pigmentosa		3e-12

>pdb|2YUH|A Chain A, Solution Structure Of The C-Terminal Region In Human Tubulin Folding Cofactor C Length = 179

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 70/107 (65%)
Query: 178 GFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSV 237
           GF N  ++ LE  + ++H++ V L+ + +C V++ GN +T+ L    + ++  GPVS SV
Sbjct: 12  GFSNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSV 71
Query: 238 FIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
           F+++C+D  L +AC QLR+H++    ++L VTSR I+E C  I FAP
Sbjct: 72  FLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAP 118

>pdb|3BH6|B Chain B, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 352

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 179 FYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVF 238
           F    +ET+      V  +   + + ++C + +  +++T+ +++  N  IFLGPV  SVF
Sbjct: 44  FSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVF 103
Query: 239 IDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFA 283
             NC D    LAC Q R+    K  V+L   ++PIIE   NI F 
Sbjct: 104 FRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSSNIKFG 148

>pdb|2BX6|A Chain A, Crystal Structure Of The Human Retinitis Pigmentosa Protein 2 (Rp2) Length = 350

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 179 FYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVF 238
           F    +ET+      V  +   + + ++C + +  +++T+ +++  N  IFLGPV  SVF
Sbjct: 42  FSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVF 101
Query: 239 IDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFA 283
             NC D    LAC Q R+    K  V+L   ++PIIE   NI F 
Sbjct: 102 FRNCRDCKCTLACQQFRVRDCRKLEVFLCCATQPIIESSSNIKFG 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
2yuh_A	179	Tubulin-specific chaperone C; microtubule, beta-tu	1e-36
3bh7_B	352	Protein XRP2; protein-protein complex, GTPase acti	5e-34
2l3l_A	111	Tubulin-specific chaperone C; tubulin binding cofa	8e-17
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-04

>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 179

 Score =  128 bits (322), Expect = 1e-36
 Identities = 42/108 (38%), Positives = 70/108 (64%)

Query: 177 IGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNS 236
            GF N  ++ LE  + ++H++ V L+ + +C V++ GN +T+ L    + ++  GPVS S
Sbjct: 11  CGFSNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTS 70

Query: 237 VFIDNCTDSTLYLACHQLRMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
           VF+++C+D  L +AC QLR+H++    ++L VTSR I+E C  I FAP
Sbjct: 71  VFLEDCSDCVLAVACQQLRIHSTKDTRIFLQVTSRAIVEDCSGIQFAP 118

>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A Length = 352

 Score =  126 bits (316), Expect = 5e-34
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 6/150 (4%)

Query: 135 FKKVDKVKLGGQGDKTDEAEKKILPKDDVDFVKPRQHEEETYIGFYNRSNETLELPSEDV 194
           F    +        + +E   K    D  + V P+         F    +ET+      V
Sbjct: 6   FFSKRRKADKESRPENEEERPKQYSWDQREKVDPKD------YMFSGLKDETVGRLPGTV 59

Query: 195 HKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQL 254
             +   + + ++C + +  +++T+ +++  N  IFLGPV  SVF  NC D    LAC Q 
Sbjct: 60  AGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQF 119

Query: 255 RMHTSHKCSVYLHVTSRPIIEHCKNIGFAP 284
           R+    K  V+L   ++PIIE   NI F  
Sbjct: 120 RVRDCRKLEVFLCCATQPIIESSSNIKFGC 149

>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens} Length = 111

 Score = 73.9 bits (181), Expect = 8e-17
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 17/123 (13%)

Query: 14  IPERLLKREQERISAIEKRQEKKGDKE-----HDGFSNMFNENYDKIKGMINEIDVDPNS 68
           +PERL +REQER   +E+R++K+ ++E        F   F      ++ ++         
Sbjct: 1   MPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVATFARERAAVEELLER------- 53

Query: 69  GSVNKEELKEKFADINKQILLLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLL 128
                 E  E+  +   ++  L  +I D+  FL +YD++     L  L          L 
Sbjct: 54  -----AESVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQ 108

Query: 129 PRK 131
           P+K
Sbjct: 109 PKK 111

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 22/84 (26%)

Query: 10  QEVNIPERLLKREQERISAIEKRQEK----------KGDKEHDGFSNMFNENYDKIKGMI 59
           QE   PE + K  +E+   +++              K  K+ + ++   +E  +K K   
Sbjct: 82  QE---PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI-- 136

Query: 60  NEIDVDPNSGSVNKEELKEKFADI 83
                  N+   +K   ++  ADI
Sbjct: 137 -------NNRIADKAFYQQPDADI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
3bh7_B	352	Protein XRP2; protein-protein complex, GTPase acti	100.0
2yuh_A	179	Tubulin-specific chaperone C; microtubule, beta-tu	100.0
2l3l_A	111	Tubulin-specific chaperone C; tubulin binding cofa	99.92
3bh7_B	352	Protein XRP2; protein-protein complex, GTPase acti	98.71
2yuh_A	179	Tubulin-specific chaperone C; microtubule, beta-tu	98.6
2b0r_A	202	Possible adenyl cyclase-associated protein; struct	97.8
1k8f_A	157	CAP, adenylyl cyclase-associated protein; actin bi	97.71
1k4z_A	159	CAP, adenylyl cyclase-associated protein; right-ha	97.64
2b0r_A	202	Possible adenyl cyclase-associated protein; struct	94.84
1k8f_A	157	CAP, adenylyl cyclase-associated protein; actin bi	93.68
1k4z_A	159	CAP, adenylyl cyclase-associated protein; right-ha	93.09

>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A

Probab=100.00  E-value=3.9e-38  Score=300.33  Aligned_cols=122  Identities=30%  Similarity=0.462  Sum_probs=119.5

Q ss_pred             eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEeceEe
Q psy4604         176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQLR  255 (302)
Q Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~QlR  255 (302)
                      .++|+|.+|++|.+.++++.+.++.|+||+||+|||.+++++|+|++|+||+|++|||.|||||++|.||+|+++|||||
T Consensus        41 ~~~i~~~~~~ti~~~~~~i~g~~v~I~nc~~c~I~l~~~~~sl~I~~c~nC~Iv~GpV~gsv~I~~C~n~~i~vac~QlR  120 (352)
T 3bh7_B           41 DYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFR  120 (352)
T ss_dssp             SSEEESCBSCEEEECTTSSTTCCEEEESCBSCEEEECSCBSCEEEESCBSCEEEEEEEEEEEEEESCEEEEEEEEEEEEE
T ss_pred             ceEEECccCCEEEECCCcccCCcEEEecCcCCEEEEecCCceEEEecCCCCEEEEccccceEEEEcCCCcEEEEEcceEE
Confidence            57999999999999988889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccceeeeEEEEecCCcEEecCCCcEEeeCCCCChhHHHhhh
Q psy4604         256 MHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLLQLSS  297 (302)
Q Consensus       256 ih~~~n~~~yl~~~s~pIIEdC~~i~f~py~~~Y~~l~~~l~  297 (302)
                      +|+|+||+|||+|+|+||||||++|+|||||+.|++|++||.
T Consensus       121 ih~c~n~~~yL~~~s~PIIEdc~~I~FaPyn~~Yp~l~~~l~  162 (352)
T 3bh7_B          121 VRDCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFK  162 (352)
T ss_dssp             EESCEEEEEEEEESSCCEEESCEEEEEEECCCBCTTHHHHHH
T ss_pred             EecccCcEEEEEcCCCcEEEcCCCceEEccccCCccHHHHHH
Confidence            999999999999999999999999999999999999999986

>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=8.1e-37  Score=267.01  Aligned_cols=125  Identities=34%  Similarity=0.665  Sum_probs=120.3

Q ss_pred             CceeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEece
Q psy4604         174 ETYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQ  253 (302)
Q Consensus       174 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~Q  253 (302)
                      +..++|++++|++|++++++..+.++.|.||++|+|+|.+.+++|+|++|++|+|++|||.|||+|++|.||+|+++|+|
T Consensus         8 ~~~~~i~~~~~~~iv~~~~~~~~~~v~I~~c~~c~I~i~g~~~sl~i~~c~~c~Iv~g~V~gsv~i~~C~~~~i~v~c~Q   87 (179)
T 2yuh_A            8 SWVCGFSNLESQVLEKRASELHQRDVLLTELSNCTVRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQ   87 (179)
T ss_dssp             CCEEECCSCBSCEEEECHHHHSSCEEEECSCBSCEEEECSCCSCEEEESCBSCEEECCCCSSCEEEESCBSCEEECCCSE
T ss_pred             CCeEEEEeeECCEEEECCccccCCeEEEecCcCCEEEEcCCccEEEEecCCCCEEEECCcccEEEEEeCCceEEEEEcCE
Confidence            45889999999999998776778999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeccceeeeEEEEecCCcEEecCCCcEEeeCCCCChhHHHhhhc
Q psy4604         254 LRMHTSHKCSVYLHVTSRPIIEHCKNIGFAPAVNIDPVLLQLSST  298 (302)
Q Consensus       254 lRih~~~n~~~yl~~~s~pIIEdC~~i~f~py~~~Y~~l~~~l~~  298 (302)
                      ||||+|+||+|||++.++||||+|++|+||||+..|++|++||..
T Consensus        88 lri~~~~~~~~yL~~~s~PIIE~c~~i~fapy~~~Y~~l~~~l~~  132 (179)
T 2yuh_A           88 LRIHSTKDTRIFLQVTSRAIVEDCSGIQFAPYTWSYPEIDKDFES  132 (179)
T ss_dssp             EEEESCBSCEEECCCSSEEEEESCBSEEEECCCCCCTTSHHHHHH
T ss_pred             EEEeccCCeEEEEeCCCCcEEEcCCCceEecCccCCHhHHHHHHH
Confidence            999999999999999999999999999999999999999999864

>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}

Probab=99.92  E-value=8.8e-26  Score=182.41  Aligned_cols=106  Identities=25%  Similarity=0.444  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhccc-----chHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhhHHHHHHHHHHHHH
Q psy4604          14 IPERLLKREQERISAIEKRQEKKGDK-----EHDGFSNMFNENYDKIKGMINEIDVDPNSGSVNKEELKEKFADINKQIL   88 (302)
Q Consensus        14 ~~erl~~r~~~R~~~~~~~r~~~~~~-----~~~~F~~~F~~~~~~ie~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~i~   88 (302)
                      |+|||++|+++|+++.++||++++++     ++++|+.+|++++.+|+++|+.+      +      ++++|++|..+|+
T Consensus         1 ~~eRL~~R~~~R~~~~~~r~~~~~~~~~~~E~~~~F~~~F~~~~~~Ie~~l~~~------~------~~~~ld~i~~~I~   68 (111)
T 2l3l_A            1 MPERLQRREQERQLEVERRKQKRQNQEVEKENSHFFVATFARERAAVEELLERA------E------SVERLEEAASRLQ   68 (111)
T ss_dssp             CCCCCCCHHHHHHTTHHHHTTSSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHC------C------SHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhcC------c------hhhHHHHHHHHHH
Confidence            68999999999999999999999976     88999999999999999999943      2      4688999999999


Q ss_pred             HHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy4604          89 LLNHVIVDAKIFLTSYDMKIYNNKLQELTEQCNILETKLLPRK  131 (302)
Q Consensus        89 ~L~~~v~das~~Lp~YD~r~~~~~l~~L~~~l~~~r~~~~pkk  131 (302)
                      +|+++|+|+++|||+||+|+|++.|+.|+..|+++++++.|||
T Consensus        69 ~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~r~~l~PKK  111 (111)
T 2l3l_A           69 GLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRRGLQPKK  111 (111)
T ss_dssp             HHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999997

>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A

Probab=98.71  E-value=5.8e-08  Score=92.48  Aligned_cols=96  Identities=18%  Similarity=0.357  Sum_probs=75.0

Q ss_pred             CCCeEEecccccEEEec-CCc--CeEEEeccCCCEEEEccccceEEEEcCCCCeEEEE--eceEeeccceeeeEEEEecC
Q psy4604         196 KKPVSLSNIDSCVVKVN-GNA--STIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLA--CHQLRMHTSHKCSVYLHVTS  270 (302)
Q Consensus       196 ~~~~~i~nl~~c~V~l~-~~~--~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~--c~QlRih~~~n~~~yl~~~s  270 (302)
                      ...+.|+|+++.+|... +..  ..+.|.||+||.|++...-.+|+|++|.||+|++.  ..-+.|++|.||.|++.|.+
T Consensus        39 ~~~~~i~~~~~~ti~~~~~~i~g~~v~I~nc~~c~I~l~~~~~sl~I~~c~nC~Iv~GpV~gsv~I~~C~n~~i~vac~Q  118 (352)
T 3bh7_B           39 PKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQ  118 (352)
T ss_dssp             CCSSEEESCBSCEEEECTTSSTTCCEEEESCBSCEEEECSCBSCEEEESCBSCEEEEEEEEEEEEEESCEEEEEEEEEEE
T ss_pred             CCceEEECccCCEEEECCCcccCCcEEEecCcCCEEEEecCCceEEEecCCCCEEEEccccceEEEEcCCCcEEEEEcce
Confidence            35788999999888775 322  58999999999998866668899999999998883  34788999999999987644


Q ss_pred             CcEEecCCCcEEeeCCCCChhH
Q psy4604         271 RPIIEHCKNIGFAPAVNIDPVL  292 (302)
Q Consensus       271 ~pIIEdC~~i~f~py~~~Y~~l  292 (302)
                       -.|.+|+++.|.=+...=|=+
T Consensus       119 -lRih~c~n~~~yL~~~s~PII  139 (352)
T 3bh7_B          119 -FRVRDCRKLEVFLCCATQPII  139 (352)
T ss_dssp             -EEEESCEEEEEEEEESSCCEE
T ss_pred             -EEEecccCcEEEEEcCCCcEE
Confidence             788899999988665544433

>2yuh_A Tubulin-specific chaperone C; microtubule, beta-tubulin folding, beta-roll, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=2.2e-07  Score=80.58  Aligned_cols=93  Identities=14%  Similarity=0.195  Sum_probs=79.8

Q ss_pred             ceeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEece-
Q psy4604         175 TYIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACHQ-  253 (302)
Q Consensus       175 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~Q-  253 (302)
                      ..+.+.+.++-+|.+..   ....++|.+|++|+|.+....++++|.||+||+|++.  ...+.|++|.||.|++.|.+ 
T Consensus        31 ~~v~I~~c~~c~I~i~g---~~~sl~i~~c~~c~Iv~g~V~gsv~i~~C~~~~i~v~--c~Qlri~~~~~~~~yL~~~s~  105 (179)
T 2yuh_A           31 RDVLLTELSNCTVRLYG---NPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVA--CQQLRIHSTKDTRIFLQVTSR  105 (179)
T ss_dssp             CEEEECSCBSCEEEECS---CCSCEEEESCBSCEEECCCCSSCEEEESCBSCEEECC--CSEEEEESCBSCEEECCCSSE
T ss_pred             CeEEEecCcCCEEEEcC---CccEEEEecCCCCEEEECCcccEEEEEeCCceEEEEE--cCEEEEeccCCeEEEEeCCCC
Confidence            36788999999988763   3578999999999999988889999999999999875  68999999999999998874 


Q ss_pred             EeeccceeeeEEEEecCCc
Q psy4604         254 LRMHTSHKCSVYLHVTSRP  272 (302)
Q Consensus       254 lRih~~~n~~~yl~~~s~p  272 (302)
                      --|.+|+++.|.=+-..=|
T Consensus       106 PIIE~c~~i~fapy~~~Y~  124 (179)
T 2yuh_A          106 AIVEDCSGIQFAPYTWSYP  124 (179)
T ss_dssp             EEEESCBSEEEECCCCCCT
T ss_pred             cEEEcCCCceEecCccCCH
Confidence            5699999999887655444

>2b0r_A Possible adenyl cyclase-associated protein; structural genomics consortium, SGC, unknown function; 2.60A {Cryptosporidium parvum}

Probab=97.80  E-value=6.8e-05  Score=65.53  Aligned_cols=109  Identities=17%  Similarity=0.262  Sum_probs=88.9

Q ss_pred             CceeeEecccC--cEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEE--
Q psy4604         174 ETYIGFYNRSN--ETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYL--  249 (302)
Q Consensus       174 ~~~~~~~~~~~--~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~--  249 (302)
                      .+.+.+.+..|  ..+++...+ -...+.|.+|.||+|.|.|...++.|++|++|.|++-.+=+++-|-+|.+..+.+  
T Consensus        49 G~KW~VEn~~~~~~~lvi~~~e-~~qsV~I~~C~nstI~IkGKvNsItld~C~k~~vv~dsvVSsvEvinc~~v~vQV~G  127 (202)
T 2b0r_A           49 KDTYLVENHVNCADPITLSEGS-IKNKVSVRCSQNSRIIVEQKVNSIFIENCVGCIFLVNGVISSIEIVNCDDIKLQMTG  127 (202)
T ss_dssp             TTEEEEECCBSCSSCEEECCCC-TTCEEEEEEEESCEEEECSCBSEEEEEEEEEEEEEECCBSSEEEEESCEEEEEEESS
T ss_pred             CCEEEEEeccCCCCCceEeccc-cCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEec
Confidence            34678888877  556654332 3678999999999999999999999999999999999999999999999999998  


Q ss_pred             EeceEeeccceeeeEEEEecC--CcEE-ecCCCcEEe
Q psy4604         250 ACHQLRMHTSHKCSVYLHVTS--RPII-EHCKNIGFA  283 (302)
Q Consensus       250 ~c~QlRih~~~n~~~yl~~~s--~pII-EdC~~i~f~  283 (302)
                      .+..+=|-.|.+|.|||.-.|  .-|+ --|++|-+.
T Consensus       128 ~vPTIsIDKtDg~qiYLSkeSl~teIvTSKSSemNV~  164 (202)
T 2b0r_A          128 IVPTISLDKSNKVNIYTSKEGKNVEVYSSKSSEMNLL  164 (202)
T ss_dssp             CCCEEEEESCEEEEEECCGGGTTCEEEEESCEEEEEE
T ss_pred             ccCEEEEEccCCEEEEEcccccCcEEEEecccceeEe
Confidence            688999999999999997442  2344 456665543

>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural genomics, PSI, protein structure initiative; 2.80A {Homo sapiens} SCOP: b.80.5.1

Probab=97.71  E-value=9.1e-05  Score=62.60  Aligned_cols=106  Identities=17%  Similarity=0.258  Sum_probs=85.5

Q ss_pred             eeeEecccCc-EEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEE--Eec
Q psy4604         176 YIGFYNRSNE-TLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYL--ACH  252 (302)
Q Consensus       176 ~~~~~~~~~~-~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~--~c~  252 (302)
                      .+.+.+..+. .+++... --...+.|.+|.||+|.+.|...++.|.+|++|.|++-.+=+++-+-+|.+..+.+  .+.
T Consensus        10 KW~VEn~~~~~~~~i~~~-~~~qsV~I~~C~~s~I~IkGKvNsIsld~C~k~~vv~ds~VSsvevinc~~~~vQv~g~vP   88 (157)
T 1k8f_A           10 KWRVENQENVSNLVIEDT-ELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVP   88 (157)
T ss_dssp             EEEEESCBSCCCEEECCC-CTTCEEEEESCBSCEEEEEEEESEEEEESCEEEEEEEEEESSEEEEESCEEEEEEESSCCS
T ss_pred             EEEEEeccCCcccEEEcc-ccCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccC
Confidence            4666776653 3444332 23678999999999999999999999999999999999999999999999999998  688


Q ss_pred             eEeeccceeeeEEEEecC--CcEE-ecCCCcEE
Q psy4604         253 QLRMHTSHKCSVYLHVTS--RPII-EHCKNIGF  282 (302)
Q Consensus       253 QlRih~~~n~~~yl~~~s--~pII-EdC~~i~f  282 (302)
                      .+=|-.+.+|.+||.-.|  ..|+ --|++|-+
T Consensus        89 tisIDktdg~~iYLSkesl~~ei~TsKsS~mNv  121 (157)
T 1k8f_A           89 TISINKTDGCHAYLSKNSLDCEIVSAKSSEMNV  121 (157)
T ss_dssp             EEEEESCEEEEEECCTTCTTCEEEEESCEEEEE
T ss_pred             EEEEEccCCEEEEEccccCCcEEEEEcccceEE
Confidence            999999999999998543  2344 45666554

>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel beta-helix, intertwined dimer; 2.30A {Saccharomyces cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A

Probab=97.64  E-value=7.2e-05  Score=63.36  Aligned_cols=107  Identities=15%  Similarity=0.198  Sum_probs=84.6

Q ss_pred             eeeEecccCcE-EecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEE--Eec
Q psy4604         176 YIGFYNRSNET-LELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYL--ACH  252 (302)
Q Consensus       176 ~~~~~~~~~~~-i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~--~c~  252 (302)
                      .+.+.+..+.. +..... --...+.|.+|.||+|.+.|...++.|.+|++|.|++-.+=+++-+-+|.+..+.+  .+.
T Consensus        11 KW~VEn~~~~~~~v~~~~-~~~qsV~I~~C~~s~I~IkGKvNsItld~C~k~~vv~ds~VSsvevinc~~v~vQv~g~vP   89 (159)
T 1k4z_A           11 KWFIENYENETESLVIDA-NKDESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLP   89 (159)
T ss_dssp             EEEEECCBSCSSCEEEEC-CTTCEEEEEEEEEEEEEEESCBSEEEEEEEEEEEEEESCBSSCEEEEEEESEEEEESSCCS
T ss_pred             EEEEEEeeCCCceEEEcc-ccCcEEEEEeccceEEEEcCcEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccC
Confidence            46666666642 222111 23578999999999999999999999999999999999999999999999999998  688


Q ss_pred             eEeeccceeeeEEEEecC--CcEE-ecCCCcEEe
Q psy4604         253 QLRMHTSHKCSVYLHVTS--RPII-EHCKNIGFA  283 (302)
Q Consensus       253 QlRih~~~n~~~yl~~~s--~pII-EdC~~i~f~  283 (302)
                      .+=|-.+.+|.+||.-.|  .-|+ --|++|-+.
T Consensus        90 tisIDktdg~~iYLSkesl~~ei~TSksS~mNv~  123 (159)
T 1k4z_A           90 QISIDKSDGGNIYLSKESLNTEIYTSCSTAINVN  123 (159)
T ss_dssp             EEEEESCEEEEEECCSTTTTCEEEEESCEEEEEE
T ss_pred             EEEEEccCCEEEEEChhhcCcEEEEEcccceeEE
Confidence            999999999999997442  2344 456666554

>2b0r_A Possible adenyl cyclase-associated protein; structural genomics consortium, SGC, unknown function; 2.60A {Cryptosporidium parvum}

Probab=94.84  E-value=0.067  Score=46.68  Aligned_cols=90  Identities=14%  Similarity=0.275  Sum_probs=69.7

Q ss_pred             eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEec--e
Q psy4604         176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACH--Q  253 (302)
Q Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~--Q  253 (302)
                      ...|.+-.|.+|.+..   ....++|.||.+|.|.+.+..+++-|-||.+..|-+--.-=+|.|+.|..|.|+++-.  .
T Consensus        74 sV~I~~C~nstI~IkG---KvNsItld~C~k~~vv~dsvVSsvEvinc~~v~vQV~G~vPTIsIDKtDg~qiYLSkeSl~  150 (202)
T 2b0r_A           74 KVSVRCSQNSRIIVEQ---KVNSIFIENCVGCIFLVNGVISSIEIVNCDDIKLQMTGIVPTISLDKSNKVNIYTSKEGKN  150 (202)
T ss_dssp             EEEEEEEESCEEEECS---CBSEEEEEEEEEEEEEECCBSSEEEEESCEEEEEEESSCCCEEEEESCEEEEEECCGGGTT
T ss_pred             EEEEEeccceEEEEcC---cEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccCEEEEEccCCEEEEEcccccC
Confidence            5677778888888763   3578999999999999999999999999999999874444569999999999998732  3


Q ss_pred             EeeccceeeeEEEEe
Q psy4604         254 LRMHTSHKCSVYLHV  268 (302)
Q Consensus       254 lRih~~~n~~~yl~~  268 (302)
                      ..+-.+....+.+.+
T Consensus       151 teIvTSKSSemNV~v  165 (202)
T 2b0r_A          151 VEVYSSKSSEMNLLF  165 (202)
T ss_dssp             CEEEEESCEEEEEEE
T ss_pred             cEEEEecccceeEec
Confidence            444455544444444

>1k8f_A CAP, adenylyl cyclase-associated protein; actin bindin structural genomics, PSI, protein structure initiative; 2.80A {Homo sapiens} SCOP: b.80.5.1

Probab=93.68  E-value=0.1  Score=43.90  Aligned_cols=90  Identities=11%  Similarity=0.190  Sum_probs=68.6

Q ss_pred             eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEec--e
Q psy4604         176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACH--Q  253 (302)
Q Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~--Q  253 (302)
                      ...+.+-.|.+|.+..   ....++|.+|++|.|.+.+..+++-+-||.+..|-+--.-=+|.|+.|..|.|+++-.  .
T Consensus        32 sV~I~~C~~s~I~IkG---KvNsIsld~C~k~~vv~ds~VSsvevinc~~~~vQv~g~vPtisIDktdg~~iYLSkesl~  108 (157)
T 1k8f_A           32 VAYIYKCVNTTLQIKG---KINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLD  108 (157)
T ss_dssp             EEEEESCBSCEEEEEE---EESEEEEESCEEEEEEEEEESSEEEEESCEEEEEEESSCCSEEEEESCEEEEEECCTTCTT
T ss_pred             EEEEEeccceEEEEcC---cEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccCEEEEEccCCEEEEEccccCC
Confidence            5677777888887652   3468999999999999999999999999999999874444569999999999998732  3


Q ss_pred             EeeccceeeeEEEEe
Q psy4604         254 LRMHTSHKCSVYLHV  268 (302)
Q Consensus       254 lRih~~~n~~~yl~~  268 (302)
                      ..+-.++...+.+.+
T Consensus       109 ~ei~TsKsS~mNv~v  123 (157)
T 1k8f_A          109 CEIVSAKSSEMNVLI  123 (157)
T ss_dssp             CEEEEESCEEEEEEE
T ss_pred             cEEEEEcccceEEee
Confidence            444455544444444

>1k4z_A CAP, adenylyl cyclase-associated protein; right-handed parallel beta-helix, intertwined dimer; 2.30A {Saccharomyces cerevisiae} SCOP: b.80.5.1 PDB: 1kq5_A

Probab=93.09  E-value=0.23  Score=41.89  Aligned_cols=91  Identities=18%  Similarity=0.241  Sum_probs=69.8

Q ss_pred             eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEEec--e
Q psy4604         176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLACH--Q  253 (302)
Q Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~c~--Q  253 (302)
                      ...+.+-.|.+|.+..   ....++|.+|++|.|.+.+..+++-+-||.+..|-+--.-=+|.|+.|..|.|+++-.  +
T Consensus        33 sV~I~~C~~s~I~IkG---KvNsItld~C~k~~vv~ds~VSsvevinc~~v~vQv~g~vPtisIDktdg~~iYLSkesl~  109 (159)
T 1k4z_A           33 SIFIGKCSQVLVQIKG---KVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGNIYLSKESLN  109 (159)
T ss_dssp             EEEEEEEEEEEEEEES---CBSEEEEEEEEEEEEEESCBSSCEEEEEEESEEEEESSCCSEEEEESCEEEEEECCSTTTT
T ss_pred             EEEEEeccceEEEEcC---cEEEEEEecCCcEEEEEeccEEEEEEEecCcEEEEEecccCEEEEEccCCEEEEEChhhcC
Confidence            5667777788887763   3578999999999999999999999999999999874444569999999999999633  3


Q ss_pred             EeeccceeeeEEEEec
Q psy4604         254 LRMHTSHKCSVYLHVT  269 (302)
Q Consensus       254 lRih~~~n~~~yl~~~  269 (302)
                      ..+-.+....+.+.+.
T Consensus       110 ~ei~TSksS~mNv~vp  125 (159)
T 1k4z_A          110 TEIYTSCSTAINVNLP  125 (159)
T ss_dssp             CEEEEESCEEEEEEES
T ss_pred             cEEEEEcccceeEEec
Confidence            4455555445555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1k8fa_	157	C-terminal domain of adenylylcyclase associated pr	97.73
d1k4za_	157	C-terminal domain of adenylylcyclase associated pr	97.63
d1k4za_	157	C-terminal domain of adenylylcyclase associated pr	94.59
d1k8fa_	157	C-terminal domain of adenylylcyclase associated pr	93.57

>d1k8fa_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: C-terminal domain of adenylylcyclase associated protein
family: C-terminal domain of adenylylcyclase associated protein
domain: C-terminal domain of adenylylcyclase associated protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3.5e-05  Score=63.11  Aligned_cols=106  Identities=17%  Similarity=0.258  Sum_probs=84.4

Q ss_pred             eeeEecccCc-EEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEE--Eec
Q psy4604         176 YIGFYNRSNE-TLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYL--ACH  252 (302)
Q Consensus       176 ~~~~~~~~~~-~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~--~c~  252 (302)
                      .+.+.+..+. .+++... .-...+.|.+|.||+|.+.|...++.|.+|++|.|++..+=+++-+-+|.+..+.+  .+.
T Consensus        10 kW~VEn~~~~~~lvi~~~-~~~qsV~I~~C~n~~i~IkgKvNsisid~C~k~~vv~dsvVs~vevvnc~~~~vQv~g~vP   88 (157)
T d1k8fa_          10 KWRVENQENVSNLVIEDT-ELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVP   88 (157)
T ss_dssp             EEEEESCBSCCCEEECCC-CTTCEEEEESCBSCEEEEEEEESEEEEESCEEEEEEEEEESSEEEEESCEEEEEEESSCCS
T ss_pred             EEEEEeccCCCccEEEcc-ccccEEEEEcccceEEEEcceEEEEEEeccceeEEEEcceEeEEEEEecCcEEEEEeccCC
Confidence            4566666554 3444332 23568999999999999999999999999999999999999999999999999888  577


Q ss_pred             eEeeccceeeeEEEEecC--CcEE-ecCCCcEE
Q psy4604         253 QLRMHTSHKCSVYLHVTS--RPII-EHCKNIGF  282 (302)
Q Consensus       253 QlRih~~~n~~~yl~~~s--~pII-EdC~~i~f  282 (302)
                      .+=|..|.+|.+||.-.+  ..|+ --|++|-+
T Consensus        89 tIsIDktdg~~iYLskesl~teI~TskSSemNV  121 (157)
T d1k8fa_          89 TISINKTDGCHAYLSKNSLDCEIVSAKSSEMNV  121 (157)
T ss_dssp             EEEEESCEEEEEECCTTCTTCEEEEESCEEEEE
T ss_pred             EEEEEccCCEEEEEcccccCcEEEEeccceeeE
Confidence            999999999999997543  3344 35555543

>d1k4za_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: C-terminal domain of adenylylcyclase associated protein
family: C-terminal domain of adenylylcyclase associated protein
domain: C-terminal domain of adenylylcyclase associated protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=3.7e-05  Score=62.98  Aligned_cols=87  Identities=14%  Similarity=0.265  Sum_probs=76.1

Q ss_pred             CCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEE--EeceEeeccceeeeEEEEecC--C
Q psy4604         196 KKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYL--ACHQLRMHTSHKCSVYLHVTS--R  271 (302)
Q Consensus       196 ~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~--~c~QlRih~~~n~~~yl~~~s--~  271 (302)
                      ...+.|.+|.||+|.+.|...++.|.+|++|.+++..+=|++-+-+|.+..+.+  .+..+=|..|.+|.+||.-.+  .
T Consensus        31 ~qsV~I~~C~n~~i~IkGKvNsIsid~C~k~~vv~dsvVs~vEvinc~~~~vQV~g~vPtisIDktdg~~iYLskesl~~  110 (157)
T d1k4za_          31 DESIFIGKCSQVLVQIKGKVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGNIYLSKESLNT  110 (157)
T ss_dssp             TCEEEEEEEEEEEEEEESCBSEEEEEEEEEEEEEESCBSSCEEEEEEESEEEEESSCCSEEEEESCEEEEEECCSTTTTC
T ss_pred             ccEEEEEcccceEEEEccEEEEEEEeccceeEEEEeceEeEEEEEecCcEEEEEeccCCEEEEEccCCEEEEEchhhcCc
Confidence            567999999999999999999999999999999999999999999999999998  577999999999999998554  3


Q ss_pred             cEE-ecCCCcEE
Q psy4604         272 PII-EHCKNIGF  282 (302)
Q Consensus       272 pII-EdC~~i~f  282 (302)
                      .|+ --|++|-+
T Consensus       111 eI~TsksSemNV  122 (157)
T d1k4za_         111 EIYTSCSTAINV  122 (157)
T ss_dssp             EEEEESCEEEEE
T ss_pred             EEEEeccceeEE
Confidence            455 45666554

>d1k4za_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: C-terminal domain of adenylylcyclase associated protein
family: C-terminal domain of adenylylcyclase associated protein
domain: C-terminal domain of adenylylcyclase associated protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=0.029  Score=45.27  Aligned_cols=72  Identities=19%  Similarity=0.265  Sum_probs=60.8

Q ss_pred             eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEE
Q psy4604         176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLA  250 (302)
Q Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~  250 (302)
                      ...+.+-.|.+|.+..   .-..+++.+|++|.|.+.+..+++-+-||.+..|-+--.--+|.|+.|..|.|+++
T Consensus        33 sV~I~~C~n~~i~IkG---KvNsIsid~C~k~~vv~dsvVs~vEvinc~~~~vQV~g~vPtisIDktdg~~iYLs  104 (157)
T d1k4za_          33 SIFIGKCSQVLVQIKG---KVNAISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQISIDKSDGGNIYLS  104 (157)
T ss_dssp             EEEEEEEEEEEEEEES---CBSEEEEEEEEEEEEEESCBSSCEEEEEEESEEEEESSCCSEEEEESCEEEEEECC
T ss_pred             EEEEEcccceEEEEcc---EEEEEEEeccceeEEEEeceEeEEEEEecCcEEEEEeccCCEEEEEccCCEEEEEc
Confidence            5677777888888753   34689999999999999999999999999999998744445699999999999995

>d1k8fa_ b.80.5.1 (A:) C-terminal domain of adenylylcyclase associated protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: C-terminal domain of adenylylcyclase associated protein
family: C-terminal domain of adenylylcyclase associated protein
domain: C-terminal domain of adenylylcyclase associated protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.052  Score=43.69  Aligned_cols=72  Identities=14%  Similarity=0.211  Sum_probs=60.5

Q ss_pred             eeeEecccCcEEecCCCCCCCCCeEEecccccEEEecCCcCeEEEeccCCCEEEEccccceEEEEcCCCCeEEEE
Q psy4604         176 YIGFYNRSNETLELPSEDVHKKPVSLSNIDSCVVKVNGNASTIHLNNIKNSQIFLGPVSNSVFIDNCTDSTLYLA  250 (302)
Q Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~~~~i~nl~~c~V~l~~~~~sl~i~n~~~c~I~~gpv~Gsv~i~~c~n~~i~~~  250 (302)
                      ...+.+-.|.+|.+..   .-..++|.||.+|.|.+.+..+++-+-||.+..|-+--.--+|.|+.|..|.|+++
T Consensus        32 sV~I~~C~n~~i~Ikg---KvNsisid~C~k~~vv~dsvVs~vevvnc~~~~vQv~g~vPtIsIDktdg~~iYLs  103 (157)
T d1k8fa_          32 VAYIYKCVNTTLQIKG---KINSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLS  103 (157)
T ss_dssp             EEEEESCBSCEEEEEE---EESEEEEESCEEEEEEEEEESSEEEEESCEEEEEEESSCCSEEEEESCEEEEEECC
T ss_pred             EEEEEcccceEEEEcc---eEEEEEEeccceeEEEEcceEeEEEEEecCcEEEEEeccCCEEEEEccCCEEEEEc
Confidence            5677788888888653   34689999999999999999999999999999988744445699999999999995