Psyllid ID: psy4640

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MPMRNPDFLSSSSPSSRKSVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEccccEEEEcccccccccccEEEEEEcccEEEEEEcccHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHccEEEEEccccHcHEcccEccccEEEEEcccccccccEEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mpmrnpdflsssspssrksvgsdldsigsrnglavtdrfEEEKLlgsillpsykispcssddkvFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTG
Flexible Loop (DISEMBL)
mpmrnpdflsssspssrksvgsdldsigsrnglavtdrFEEEKLLgsillpsykispcssdDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTG
Low Complexity Region (SEG)
MPMRNPDFLsssspssrksvgsDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTG
Disordered region (IsUnstruct)
*********************************AVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI*******
Disordered Region (DISOPRED)
*************************SIGSRNGLAVTDRFEEEKLLGSILLPSYKIS*********RKFSFKAEHANMRTYYFAADTRESMIQWMNALSL**********
Disordered Region (DISEMBL)
*************************SIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTG
Disordered Region (DISPRO)
**********************DLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPMRNPDFLSSSSPSSRKSVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
B6RSP1	1197	Pleckstrin homology domai	yes	N/A	0.614	0.055	0.522	1e-16
Q9HAU0	1116	Pleckstrin homology domai	no	N/A	0.596	0.058	0.523	5e-13
Q3UIL6	1118	Pleckstrin homology domai	no	N/A	0.614	0.059	0.448	2e-12
Q6IQ23	1121	Pleckstrin homology domai	no	N/A	0.614	0.059	0.436	6e-12
Q9Y2H5	1048	Pleckstrin homology domai	no	N/A	0.596	0.062	0.415	5e-10
Q8VC98	588	Pleckstrin homology domai	no	N/A	0.633	0.117	0.463	1e-09
Q7TQG1	1173	Pleckstrin homology domai	no	N/A	0.596	0.055	0.4	1e-09
Q9H4M7	779	Pleckstrin homology domai	no	N/A	0.633	0.088	0.478	1e-09
P60669	779	Pleckstrin homology domai	no	N/A	0.633	0.088	0.463	2e-09
Q9Z1T4	1032	Connector enhancer of kin	no	N/A	0.522	0.055	0.366	3e-05

>sp|B6RSP1|PKHA7_DANRE Pleckstrin homology domain-containing family A member 7 OS=Danio rerio GN=plekha7 PE=2 SV=2

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 50/67 (74%)

Query: 41  EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
           EE +LGSI LPSY I+P   +D + RK++FKAEH  MRTYYF+ADT+E M  W+ A++ A
Sbjct: 196 EESVLGSIPLPSYTIAPVGPEDHISRKYAFKAEHTGMRTYYFSADTQEDMNGWVRAMNQA 255

Query: 101 SILQNSS 107
           +++Q  +
Sbjct: 256 ALMQTHT 262

Required for zonula adherens biogenesis and maintenance.
Danio rerio (taxid: 7955)

>sp|Q9HAU0|PKHA5_HUMAN Pleckstrin homology domain-containing family A member 5 OS=Homo sapiens GN=PLEKHA5 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/65 (52%), Positives = 49/65 (75%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct: 206 KEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 265

Query: 100 ASILQ 104
           A+++Q
Sbjct: 266 AALVQ 270

Homo sapiens (taxid: 9606)

>sp|Q3UIL6|PKHA7_MOUSE Pleckstrin homology domain-containing family A member 7 OS=Mus musculus GN=Plekha7 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 20/87 (22%)

Query: 41  EEKLLGSILLPSYKISPCSSDDKVFRKFSFKA-------------------EHANMRTYY 81
           EE +LGSI LPSY ISP + +D++ RK+SFKA                   EH+ MRTYY
Sbjct: 201 EEAVLGSIPLPSYVISPVAPEDRISRKYSFKAVHTGMRALIYSTTTAGSQMEHSGMRTYY 260

Query: 82  FAADTRESMIQWMNALSLAS-ILQNSS 107
           F+ADT E M  W+ A++ A+ +L  SS
Sbjct: 261 FSADTLEDMNAWVRAMNQAAQVLSRSS 287

Required for zonula adherens biogenesis and maintenance. Acts via its interaction with KIAA1543/Nezha, which anchors microtubules at their minus-ends to zonula adherens, leading to recruit KIFC3 kinesin to junctional site.

Mus musculus (taxid: 10090)

>sp|Q6IQ23|PKHA7_HUMAN Pleckstrin homology domain-containing family A member 7 OS=Homo sapiens GN=PLEKHA7 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 20/87 (22%)

Query: 41  EEKLLGSILLPSYKISPCSSDDKVFRKFSFK-------------------AEHANMRTYY 81
           EE +LGSI LPSY ISP + +D++ RK+SFK                   AE + MRTYY
Sbjct: 202 EEAVLGSIPLPSYVISPVAPEDRISRKYSFKAVHTGMRALIYNSSTAGSQAEQSGMRTYY 261

Query: 82  FAADTRESMIQWMNALSLAS-ILQNSS 107
           F+ADT+E M  W+ A++ A+ +L  SS
Sbjct: 262 FSADTQEDMNAWVRAMNQAAQVLSRSS 288

Required for zonula adherens biogenesis and maintenance. Acts via its interaction with KIAA1543/Nezha, which anchors microtubules at their minus-ends to zonula adherens, leading to recruit KIFC3 kinesin to junctional site.

Homo sapiens (taxid: 9606)

>sp|Q9Y2H5|PKHA6_HUMAN Pleckstrin homology domain-containing family A member 6 OS=Homo sapiens GN=PLEKHA6 PE=1 SV=4

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 44/65 (67%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           +EE +LGSI L S++++     D + RK +FKAEHA +RTY+F+A++ E    W+ A+  
Sbjct: 96  KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 155

Query: 100 ASILQ 104
           A+ +Q
Sbjct: 156 AARVQ 160

Homo sapiens (taxid: 9606)

>sp|Q8VC98|PKHA4_MOUSE Pleckstrin homology domain-containing family A member 4 OS=Mus musculus GN=Plekha4 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 40/69 (57%)

Query: 41  EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
           EE +LGS+LLPSY + P        R+F+F AEH  MRTY  AADT E +  W+ AL  A
Sbjct: 92  EESVLGSVLLPSYSVRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 151

Query: 101 SILQNSSTG 109
           S  +    G
Sbjct: 152 SRAEGEDCG 160

Binds specifically to phosphatidylinositol 3-phosphate (PtdIns3P), but not to other phosphoinositides.

Mus musculus (taxid: 10090)

>sp|Q7TQG1|PKHA6_MOUSE Pleckstrin homology domain-containing family A member 6 OS=Mus musculus GN=Plekha6 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 44/65 (67%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           ++E +LGSI L S++++     D + RK +FKAEHA +RTY+F+A++ E    W+ A+  
Sbjct: 96  KQESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 155

Query: 100 ASILQ 104
           A+ +Q
Sbjct: 156 AARVQ 160

Mus musculus (taxid: 10090)

>sp|Q9H4M7|PKHA4_HUMAN Pleckstrin homology domain-containing family A member 4 OS=Homo sapiens GN=PLEKHA4 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/69 (47%), Positives = 40/69 (57%)

Query: 41  EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
           EE +LGS+LLPSY I P        R+F+F AEH  MRTY  AADT E +  W+ AL  A
Sbjct: 92  EESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 151

Query: 101 SILQNSSTG 109
           S  +    G
Sbjct: 152 SRAEGDDYG 160

Binds specifically to phosphatidylinositol 3-phosphate (PtdIns3P), but not to other phosphoinositides.

Homo sapiens (taxid: 9606)

>sp|P60669|PKHA4_RAT Pleckstrin homology domain-containing family A member 4 OS=Rattus norvegicus GN=Plekha4 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 40/69 (57%)

Query: 41  EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
           EE +LGS+LLPSY + P        R+F+F AEH  MRTY  AADT E +  W+ AL  A
Sbjct: 92  EESVLGSVLLPSYSVRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGKA 151

Query: 101 SILQNSSTG 109
           S  +    G
Sbjct: 152 SRAEGEDCG 160

Binds specifically to phosphatidylinositol 3-phosphate (PtdIns3P), but not to other phosphoinositides.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z1T4|CNKR2_RAT Connector enhancer of kinase suppressor of ras 2 OS=Rattus norvegicus GN=Cnksr2 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 3/60 (5%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           E+EK  G I LP +KI   S   +  +K++FKA H  ++++YFAA+  + M +W+N +++
Sbjct: 610 EDEKAEGFISLPEFKIDRAS---ECRKKYAFKACHPKIKSFYFAAEHLDDMNRWLNRINM 666

May function as an adapter protein or regulator of Ras signaling pathways, in synaptic junctions.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
328719140	1876	PREDICTED: hypothetical protein LOC10015	0.614	0.035	0.852	9e-27
328719136	1931	PREDICTED: hypothetical protein LOC10015	0.614	0.034	0.852	1e-26
328719138	1955	PREDICTED: hypothetical protein LOC10015	0.614	0.034	0.852	1e-26
328719132	1925	PREDICTED: hypothetical protein LOC10015	0.614	0.034	0.852	1e-26
328719134	1950	PREDICTED: hypothetical protein LOC10015	0.614	0.034	0.852	1e-26
242011727	752	phosphoinositol 3-phosphate-binding prot	0.596	0.086	0.815	6e-26
350417736	1986	PREDICTED: hypothetical protein LOC10074	0.642	0.035	0.728	8e-25
340729380	2148	PREDICTED: hypothetical protein LOC10064	0.642	0.032	0.728	8e-25
328791467	1021	PREDICTED: hypothetical protein LOC10057	0.642	0.068	0.728	1e-24
345492005	2706	PREDICTED: hypothetical protein LOC10067	0.642	0.025	0.714	2e-24

>gi|328719140|ref|XP_003246674.1| PREDICTED: hypothetical protein LOC100159827 isoform 5 [Acyrthosiphon pisum]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 63/68 (92%), Gaps = 1/68 (1%)

Query: 40  EEEKLLGSILLPSYKISPCS-SDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
           EEEKLLGSILLPSYKISPC  S+DKV+RKFSFKAEH NMRTYYFA+DTRE M+QWMNALS
Sbjct: 74  EEEKLLGSILLPSYKISPCCPSEDKVYRKFSFKAEHDNMRTYYFASDTRELMVQWMNALS 133

Query: 99  LASILQNS 106
           LASILQ +
Sbjct: 134 LASILQQN 141

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719136|ref|XP_003246673.1| PREDICTED: hypothetical protein LOC100159827 isoform 4 [Acyrthosiphon pisum]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 63/68 (92%), Gaps = 1/68 (1%)

Query: 40  EEEKLLGSILLPSYKISPCS-SDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
           EEEKLLGSILLPSYKISPC  S+DKV+RKFSFKAEH NMRTYYFA+DTRE M+QWMNALS
Sbjct: 74  EEEKLLGSILLPSYKISPCCPSEDKVYRKFSFKAEHDNMRTYYFASDTRELMVQWMNALS 133

Query: 99  LASILQNS 106
           LASILQ +
Sbjct: 134 LASILQQN 141

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719138|ref|XP_001942884.2| PREDICTED: hypothetical protein LOC100159827 isoform 1 [Acyrthosiphon pisum]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 63/68 (92%), Gaps = 1/68 (1%)

Query: 40  EEEKLLGSILLPSYKISPCS-SDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
           EEEKLLGSILLPSYKISPC  S+DKV+RKFSFKAEH NMRTYYFA+DTRE M+QWMNALS
Sbjct: 74  EEEKLLGSILLPSYKISPCCPSEDKVYRKFSFKAEHDNMRTYYFASDTRELMVQWMNALS 133

Query: 99  LASILQNS 106
           LASILQ +
Sbjct: 134 LASILQQN 141

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719132|ref|XP_003246671.1| PREDICTED: hypothetical protein LOC100159827 isoform 2 [Acyrthosiphon pisum]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 63/68 (92%), Gaps = 1/68 (1%)

Query: 40  EEEKLLGSILLPSYKISPCS-SDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
           EEEKLLGSILLPSYKISPC  S+DKV+RKFSFKAEH NMRTYYFA+DTRE M+QWMNALS
Sbjct: 74  EEEKLLGSILLPSYKISPCCPSEDKVYRKFSFKAEHDNMRTYYFASDTRELMVQWMNALS 133

Query: 99  LASILQNS 106
           LASILQ +
Sbjct: 134 LASILQQN 141

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719134|ref|XP_003246672.1| PREDICTED: hypothetical protein LOC100159827 isoform 3 [Acyrthosiphon pisum]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/68 (85%), Positives = 63/68 (92%), Gaps = 1/68 (1%)

Query: 40  EEEKLLGSILLPSYKISPCS-SDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
           EEEKLLGSILLPSYKISPC  S+DKV+RKFSFKAEH NMRTYYFA+DTRE M+QWMNALS
Sbjct: 99  EEEKLLGSILLPSYKISPCCPSEDKVYRKFSFKAEHDNMRTYYFASDTRELMVQWMNALS 158

Query: 99  LASILQNS 106
           LASILQ +
Sbjct: 159 LASILQQN 166

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011727|ref|XP_002426598.1| phosphoinositol 3-phosphate-binding protein, putative [Pediculus humanus corporis] gi|212510747|gb|EEB13860.1| phosphoinositol 3-phosphate-binding protein, putative [Pediculus humanus corporis]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 62/65 (95%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           EEEKLLGSILLPSYK+SPC+++DKV+RK++FKAEHANMRTYYFAA+TRE M +W NALSL
Sbjct: 111 EEEKLLGSILLPSYKVSPCTAEDKVYRKYAFKAEHANMRTYYFAAETRELMTEWTNALSL 170

Query: 100 ASILQ 104
           ASILQ
Sbjct: 171 ASILQ 175

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417736|ref|XP_003491569.1| PREDICTED: hypothetical protein LOC100742314 [Bombus impatiens]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 63/70 (90%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           EEEKLLGSILLPSY+++ C  +DKV RKF+FKAEHANMRTY+FAAD+RESM QW+NAL+L
Sbjct: 185 EEEKLLGSILLPSYRVTVCKPEDKVNRKFAFKAEHANMRTYHFAADSRESMNQWVNALTL 244

Query: 100 ASILQNSSTG 109
           A++LQ+ S G
Sbjct: 245 ATLLQDPSPG 254

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729380|ref|XP_003402982.1| PREDICTED: hypothetical protein LOC100645228 [Bombus terrestris]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 63/70 (90%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           EEEKLLGSILLPSY+++ C  +DKV RKF+FKAEHANMRTY+FAAD+RESM QW+NAL+L
Sbjct: 185 EEEKLLGSILLPSYRVTVCKPEDKVNRKFAFKAEHANMRTYHFAADSRESMNQWVNALTL 244

Query: 100 ASILQNSSTG 109
           A++LQ+ S G
Sbjct: 245 ATLLQDPSPG 254

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791467|ref|XP_003251574.1| PREDICTED: hypothetical protein LOC100576695 [Apis mellifera]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 63/70 (90%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           EEEKLLGSILLPSY+++ C  +DKV RKF+FKAEHANMRTY+FAAD+RESM QW+NAL+L
Sbjct: 186 EEEKLLGSILLPSYRVTVCKPEDKVNRKFAFKAEHANMRTYHFAADSRESMNQWVNALTL 245

Query: 100 ASILQNSSTG 109
           A++LQ+ S G
Sbjct: 246 ATLLQDPSPG 255

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492005|ref|XP_003426754.1| PREDICTED: hypothetical protein LOC100678498 [Nasonia vitripennis]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 63/70 (90%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           EEEKLLGSILLPSY+++ C  +DK+ +KF+FKAEHANMRTY+FAADTRESM QW+NAL+L
Sbjct: 285 EEEKLLGSILLPSYRVTVCRPEDKINKKFAFKAEHANMRTYHFAADTRESMNQWVNALTL 344

Query: 100 ASILQNSSTG 109
           AS+LQ+ + G
Sbjct: 345 ASLLQDPNPG 354

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
FB|FBgn0085412	3022	CG34383 [Drosophila melanogast	0.642	0.023	0.614	6.5e-19
ZFIN|ZDB-GENE-050419-75	1208	plekha7a "pleckstrin homology	0.587	0.052	0.546	4.5e-14
UNIPROTKB|I3LDM9	168	I3LDM9 "Uncharacterized protei	0.596	0.386	0.523	4.9e-14
UNIPROTKB|F1NQ91	1019	F1NQ91 "Uncharacterized protei	0.596	0.063	0.538	4.2e-13
ZFIN|ZDB-GENE-041210-25	1237	plekha5 "pleckstrin homology d	0.577	0.050	0.555	8.9e-13
UNIPROTKB|F1SQZ2	1040	F1SQZ2 "Uncharacterized protei	0.596	0.062	0.523	1.2e-12
UNIPROTKB|E2RD14	1118	PLEKHA5 "Uncharacterized prote	0.596	0.058	0.523	1.3e-12
UNIPROTKB|B4DJX4	977	PLEKHA5 "cDNA FLJ59284, highly	0.596	0.066	0.523	1.4e-12
UNIPROTKB|F5H0I0	1098	PLEKHA5 "Pleckstrin homology d	0.596	0.059	0.523	1.6e-12
UNIPROTKB|E7EME8	1105	PLEKHA5 "Pleckstrin homology d	0.596	0.058	0.523	1.6e-12

FB|FBgn0085412 CG34383 [Drosophila melanogaster (taxid:7227)]

 Score = 245 (91.3 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 43/70 (61%), Positives = 58/70 (82%)

Query:    40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
             EEEKLLGS+LLPSY++S C  +DK++RKF+FK EH NMRTY+ AAD  E+M+QW+ AL+ 
Sbjct:   408 EEEKLLGSVLLPSYRVSACLPEDKIYRKFAFKCEHQNMRTYWLAADNSEAMMQWVRALAA 467

Query:   100 ASILQNSSTG 109
             AS++Q  S+G
Sbjct:   468 ASLMQAPSSG 477

GO:0005543 "phospholipid binding" evidence=IEA

ZFIN|ZDB-GENE-050419-75 plekha7a "pleckstrin homology domain containing, family A member 7a" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 4.5e-14, P = 4.5e-14
 Identities = 35/64 (54%), Positives = 49/64 (76%)

Query:    41 EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
             EE +LGSI LPSY I+P   +D + RK++FKAEH  MRTYYF+ADT+E M  W+ A++ A
Sbjct:   196 EESVLGSIPLPSYTIAPVGPEDHISRKYAFKAEHTGMRTYYFSADTQEDMNGWVRAMNQA 255

Query:   101 SILQ 104
             +++Q
Sbjct:   256 ALMQ 259

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005813 "centrosome" evidence=ISS

GO:0045218 "zonula adherens maintenance" evidence=ISS

GO:0090136 "epithelial cell-cell adhesion" evidence=ISS

GO:0070097 "delta-catenin binding" evidence=ISS

GO:0005915 "zonula adherens" evidence=ISS

GO:0055007 "cardiac muscle cell differentiation" evidence=IMP

GO:0008016 "regulation of heart contraction" evidence=IMP

GO:0030054 "cell junction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|I3LDM9 I3LDM9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 34/65 (52%), Positives = 49/65 (75%)

Query:    40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
             +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct:    98 KEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 157

Query:   100 ASILQ 104
             A+++Q
Sbjct:   158 AALVQ 162

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1NQ91 F1NQ91 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 185 (70.2 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 35/65 (53%), Positives = 49/65 (75%)

Query:    40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
             +EE +LGSILLPS++IS  S +D + RK++FKA H NMRTYYF  DT + M  WM A++ 
Sbjct:   131 KEEGILGSILLPSFQISVLSPEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMTD 190

Query:   100 ASILQ 104
             A+++Q
Sbjct:   191 AALVQ 195

GO:0005543 "phospholipid binding" evidence=IEA

ZFIN|ZDB-GENE-041210-25 plekha5 "pleckstrin homology domain containing, family A member 5" [Danio rerio (taxid:7955)]

 Score = 183 (69.5 bits), Expect = 8.9e-13, P = 8.9e-13
 Identities = 35/63 (55%), Positives = 46/63 (73%)

Query:    40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
             +EE +LGSILLPS+ IS  S DD + RK++FKA H NMRTYYF+ DT + M  WM  +S 
Sbjct:   205 KEEGILGSILLPSFHISMLSVDDHITRKYAFKATHPNMRTYYFSTDTAKDMESWMKVMSD 264

Query:   100 ASI 102
             A++
Sbjct:   265 AAM 267

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1SQZ2 F1SQZ2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 181 (68.8 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 34/65 (52%), Positives = 49/65 (75%)

Query:    40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
             +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct:   140 KEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 199

Query:   100 ASILQ 104
             A+++Q
Sbjct:   200 AALVQ 204

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E2RD14 PLEKHA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 34/65 (52%), Positives = 49/65 (75%)

Query:    40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
             +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct:   207 KEEGILGSILLPSFQIAMLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 266

Query:   100 ASILQ 104
             A+++Q
Sbjct:   267 AALVQ 271

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|B4DJX4 PLEKHA5 "cDNA FLJ59284, highly similar to Pleckstrin homology domain-containing family A member 5" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 34/65 (52%), Positives = 49/65 (75%)

Query:    40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
             +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct:    98 KEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 157

Query:   100 ASILQ 104
             A+++Q
Sbjct:   158 AALVQ 162

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F5H0I0 PLEKHA5 "Pleckstrin homology domain-containing family A member 5" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 34/65 (52%), Positives = 49/65 (75%)

Query:    40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
             +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct:    98 KEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 157

Query:   100 ASILQ 104
             A+++Q
Sbjct:   158 AALVQ 162

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E7EME8 PLEKHA5 "Pleckstrin homology domain-containing family A member 5" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 34/65 (52%), Positives = 49/65 (75%)

Query:    40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
             +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct:    98 KEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 157

Query:   100 ASILQ 104
             A+++Q
Sbjct:   158 AALVQ 162

GO:0005543 "phospholipid binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B6RSP1	PKHA7_DANRE	No assigned EC number	0.5223	0.6146	0.0559	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	109
cd13248	104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	6e-37
cd01260	114	cd01260, PH_CNK_mammalian-like, Connector enhancer	2e-09
smart00233	102	smart00233, PH, Pleckstrin homology domain	5e-09
pfam00169	101	pfam00169, PH, PH domain	6e-09
cd13316	95	cd13316, PH_Boi, Boi family Pleckstrin homology do	1e-07
cd13236	105	cd13236, PH2_FGD1-4, FYVE, RhoGEF and PH domain co	1e-07
cd13288	120	cd13288, PH_Ses, Sesquipedalian family Pleckstrin	7e-06
cd13308	113	cd13308, PH_3BP2, SH3 domain-binding protein 2 Ple	2e-05
cd13326	90	cd13326, PH_CNK_insect-like, Connector enhancer of	2e-05
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	7e-05
cd13235	113	cd13235, PH2_FARP1-like, FERM, RhoGEF and pleckstr	5e-04
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	6e-04
cd01263	119	cd01263, PH_anillin, Anillin Pleckstrin homology (	0.003
cd13272	116	cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bis	0.004

>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

 Score =  120 bits (303), Expect = 6e-37
 Identities = 47/62 (75%), Positives = 52/62 (83%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           EEEK LGSILLPSY ISP S  D++ RKF+FKAEHA MRTYYFAADT+E M QWM ALSL
Sbjct: 43  EEEKALGSILLPSYTISPASPSDEINRKFAFKAEHAGMRTYYFAADTQEEMEQWMKALSL 102

Query: 100 AS 101
           A+
Sbjct: 103 AA 104

PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 104

>gnl|CDD|241291 cd01260, PH_CNK_mammalian-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 50.5 bits (121), Expect = 2e-09
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           ++EK  G I LP +KI   S   K   K++FKA H  ++T+YFAA+  + M +W++ L  
Sbjct: 52  QDEKAEGFINLPDFKIERASECKK---KYAFKASHPKIKTFYFAAENLDDMNKWLSKLIT 108

Query: 100 ASILQ 104
           A    
Sbjct: 109 AINKY 113

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and, with the exception of CNK3, a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from mammals, chickens, amphibians, fish, and crustacea. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 49.1 bits (117), Expect = 5e-09
 Identities = 14/65 (21%), Positives = 26/65 (40%)

Query: 37  DRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96
              +  K  GSI L    +      D   +   F+ + ++ +T    A++ E   +W+ A
Sbjct: 37  KDKKSYKPKGSIDLSGCTVREAPDPDSSKKPHCFEIKTSDRKTLLLQAESEEEREKWVEA 96

Query: 97  LSLAS 101
           L  A 
Sbjct: 97  LRKAI 101

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 49.0 bits (117), Expect = 6e-09
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
              +  GSI L   +++     +   RK  F+    +  T+   A++ E   +W+ A+  
Sbjct: 39  SSSRPKGSIPLSGCQVTKVPDSEDGKRKNCFEIRTGDRETFLLQAESEEERKEWVKAIRS 98

Query: 100 AS 101
           A 
Sbjct: 99  AI 100

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|241470 cd13316, PH_Boi, Boi family Pleckstrin homology domain

 Score = 45.4 bits (108), Expect = 1e-07
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEH-ANMRTYYFAADTRESMIQWMNALS 98
            + K  G I L  ++++   S+ K   ++ FK    A  + +YFA D +E + +WM AL 
Sbjct: 34  NDSKEKGLIDLTGHRVTVDDSNSKP-GRYGFKLVPPAVEKVHYFAVDEKEVLREWMKALM 92

Query: 99  LAS 101
            A+
Sbjct: 93  KAT 95

Yeast Boi proteins Boi1 and Boi2 are functionally redundant and important for cell growth with Boi mutants displaying defects in bud formation and in the maintenance of cell polarity.They appear to be linked to Rho-type GTPase, Cdc42 and Rho3. Boi1 and Boi2 display two-hybrid interactions with the GTP-bound ("active") form of Cdc42, while Rho3 can suppress of the lethality caused by deletion of Boi1 and Boi2. These findings suggest that Boi1 and Boi2 are targets of Cdc42 that promote cell growth in a manner that is regulated by Rho3. Boi proteins contain a N-terminal SH3 domain, followed by a SAM (sterile alpha motif) domain, a proline-rich region, which mediates binding to the second SH3 domain of Bem1, and C-terminal PH domain. The PH domain is essential for its function in cell growth and is important for localization to the bud, while the SH3 domain is needed for localization to the neck. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 95

>gnl|CDD|241390 cd13236, PH2_FGD1-4, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins pleckstrin homology (PH) domain, C-terminus

 Score = 45.4 bits (108), Expect = 1e-07
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 43  KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101
           +   +I LP Y++S    ++++  K  FK   +  +++YF+A++ E   +W+ ALS A+
Sbjct: 48  RAPRTIPLPGYEVSVPPPEERLDGKHVFKLSQSK-QSHYFSAESEELQQRWLEALSRAA 105

In general, FGDs have a RhoGEF (DH) domain, followed by an N-terminal PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activates the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the N-terminal PH domain is involved in intracellular targeting of the DH domain. Not much is known about FGD2. FGD1 is the best characterized member of the group with mutations here leading to the X-linked disorder known as faciogenital dysplasia (FGDY). Both FGD1 and FGD3 are targeted by the ubiquitin ligase SCF(FWD1/beta-TrCP) upon phosphorylation of two serine residues in its DSGIDS motif and subsequently degraded by the proteasome. However, FGD1 and FGD3 induced significantly different morphological changes in HeLa Tet-Off cells and while FGD1 induced long finger-like protrusions, FGD3 induced broad sheet-like protrusions when the level of GTP-bound Cdc42 was significantly increased by the inducible expression of FGD3. They also reciprocally regulated cell motility in inducibly expressed in HeLa Tet-Off cells, FGD1 stimulated cell migration while FGD3 inhibited it. FGD1 and FGD3 therefore play different roles to regulate cellular functions, even though their intracellular levels are tightly controlled by the same destruction pathway through SCF(FWD1/beta-TrCP). FGD4 is one of the genes associated with Charcot-Marie-Tooth neuropathy type 4 (CMT4), a group of progressive motor and sensory axonal and demyelinating neuropathies that are distinguished from other forms of CMT by autosomal recessive inheritance. Those affected have distal muscle weakness and atrophy associated with sensory loss and, frequently, pes cavus foot deformity. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241442 cd13288, PH_Ses, Sesquipedalian family Pleckstrin homology (PH) domain

 Score = 41.4 bits (98), Expect = 7e-06
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 45  LGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI 102
           LG I+L    +     ++     F+ + +    R+Y  AA+++E M  WM ALS AS 
Sbjct: 48  LGVIVLEGCTVELSEDEEPY--AFAIRFDGPGSRSYVLAAESQEDMESWMKALSRASY 103

The sesquipedalian family has 2 mammalian members: Ses1 and Ses2, which are also callled 7 kDa inositol polyphosphate phosphatase-interacting protein 1 and 2. They play a role in endocytic trafficking and are required for receptor recycling from endosomes, both to the trans-Golgi network and the plasma membrane. Members of this family form homodimers and heterodimers. Sesquipedalian interacts with inositol polyphosphate 5-phosphatase OCRL-1 (INPP5F) also known as Lowe oculocerebrorenal syndrome protein, a phosphatase enzyme that is involved in actin polymerization and is found in the trans-Golgi network and INPP5B. Sesquipedalian contains a single PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241462 cd13308, PH_3BP2, SH3 domain-binding protein 2 Pleckstrin homology (PH) domain

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 64  VFRKFSFKAEH--ANMRTYYFAADTRESMIQWM 94
             +KF FK  H   + RT+YF+A + + M +WM
Sbjct: 70  SKKKFVFKIIHLSKDHRTWYFSAKSEDEMKEWM 102

SH3BP2 (the gene that encodes the adaptor protein 3BP2), HD, ITU, IT10C3, and ADD1 are located near the Huntington's Disease Gene on Human Chromosome 4pl6.3. SH3BP2 lies in a region that is often missing in individuals with Wolf-Hirschhorn syndrome (WHS). Gain of function mutations in SH3BP2 causes enhanced B-cell antigen receptor (BCR)-mediated activation of nuclear factor of activated T cells (NFAT), resulting in a rare, genetic disorder called cherubism. This results in an increase in the signaling complex formation with Syk, phospholipase C-gamma2 (PLC-gamma2), and Vav1. It was recently discovered that Tankyrase regulates 3BP2 stability through ADP-ribosylation and ubiquitylation by the E3-ubiquitin ligase. Cherubism mutations uncouple 3BP2 from Tankyrase-mediated protein destruction, which results in its stabilization and subsequent hyperactivation of the Src, Syk, and Vav signaling pathways. SH3BP2 is also a potential negative regulator of the abl oncogene. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241480 cd13326, PH_CNK_insect-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 9/52 (17%)

Query: 48 ILLPSYKISP---CSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96
          I LP + +SP     S     RK++FK  H     +YFAA+++E M +W++ 
Sbjct: 45 IFLPGFTVSPAPEVKS-----RKYAFKVYHTGT-VFYFAAESQEDMKKWLDL 90

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from insects, spiders, mollusks, and nematodes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 38.5 bits (90), Expect = 7e-05
 Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 42  EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101
            +  G I L S  ++  S+++   ++F+F+      RT+Y  AD+ +   +W++A+   +
Sbjct: 45  SEPRGVIDL-SDCLTVKSAEEATNKEFAFEVSTPE-RTFYLIADSEKEKEEWISAI-GRA 101

Query: 102 ILQNSSTG 109
           I++ S + 
Sbjct: 102 IVKLSRSK 109

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241389 cd13235, PH2_FARP1-like, FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 2

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 38  RFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 97
             ++E  L S+ L  Y +   S  D + + + FK +  +   Y+F A++  +  +WM  +
Sbjct: 51  SHQDEFPLASLPLLGYSVGLPSEADNIDKDYVFKLQFKS-HVYFFRAESEYTFERWMEVI 109

Query: 98  SLAS 101
             A+
Sbjct: 110 RSAT 113

Members here include FARP1 (also called Chondrocyte-derived ezrin-like protein; PH domain-containing family C member 2), FARP2 (also called FIR/FERM domain including RhoGEF; FGD1-related Cdc42-GEF/FRG), and FARP6 (also called Zinc finger FYVE domain-containing protein 24). They are members of the Dbl family guanine nucleotide exchange factors (GEFs) which are upstream positive regulators of Rho GTPases. Little is known about FARP1 and FARP6, though FARP1 has increased expression in differentiated chondrocytes. FARP2 is thought to regulate neurite remodeling by mediating the signaling pathways from membrane proteins to Rac. It is found in brain, lung, and testis, as well as embryonic hippocampal and cortical neurons. FARP1 and FARP2 are composed of a N-terminal FERM domain, a proline-rich (PR) domain, Dbl-homology (DH), and two C-terminal PH domains. FARP6 is composed of Dbl-homology (DH), and two C-terminal PH domains separated by a FYVE domain. This hierarchy contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 35.8 bits (82), Expect = 6e-04
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 29 SRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-MRTYYFAADTR 87
            + L      ++       L+P              +   F+    +  RTYY  A++ 
Sbjct: 24 FDDVLLYYKSKKDSSKKPKGLIPLSDGLEVELVSSSGKPNCFELVTPDRGRTYYLQAESE 83

Query: 88 ESMIQWMNA 96
          E   +W+ A
Sbjct: 84 EEREEWLEA 92

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|241294 cd01263, PH_anillin, Anillin Pleckstrin homology (PH) domain

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 14/71 (19%)

Query: 40  EEEKLLGSILLPSY---KISPCSSDDKVFRKFSFKAE----------HANMRTYYFAADT 86
           E++K +GSI L      K+ P S  +   R  +F+ E              +    +ADT
Sbjct: 42  EKKKPIGSIDLRKCINEKVEPAS-RELCARPNTFELETLRPAEDSDGTNEKKRVLLSADT 100

Query: 87  RESMIQWMNAL 97
           +E  I+W++AL
Sbjct: 101 KEERIEWLDAL 111

Anillin (Rhotekin/RTKN; also called PLEKHK/Pleckstrin homology domain-containing family K) is an actin binding protein involved in cytokinesis. It interacts with GTP-bound Rho proteins and results in the inhibition of their GTPase activity. Dysregulation of the Rho signal transduction pathway has been implicated in many forms of cancer. Anillin proteins have a N-terminal HRI domain/ACC (anti-parallel coiled-coil) finger domain or Rho-binding domain binds small GTPases from the Rho family. The C-terminal PH domain helps target anillin to ectopic septin containing foci. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 119

>gnl|CDD|241426 cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bisphosphate 4-phosphatase and Type II inositol 3,4-bisphosphate 4-phosphatase Pleckstrin homology (PH) domain

 Score = 33.8 bits (78), Expect = 0.004
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 45  LGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101
            G I+L + ++     ++     F+F     + + Y F+  + E   +W+ A+  AS
Sbjct: 40  AGVIVLENCRVQ---REEPDPGGFAFSLVFKDEKKYRFSCRSEEERDEWIEAIKQAS 93

INPP4A (also called Inositol polyphosphate 4-phosphatase type I) and INPP4B (also called Inositol polyphosphate 4-phosphatase type II) both catalyze the hydrolysis of the 4-position phosphate of phosphatidylinositol 3,4-bisphosphate and inositol 1,3,4-trisphosphate. They differ in that INPP4A additionally catalyzes the hydrolysis of the 4-position phosphate of inositol 3,4-bisphosphate, while INPP4B catalyzes the hydrolysis of the 4-position phosphate of inositol 1,4-bisphosphate. They both have a single PH domain followed by a C2 domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.88
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.83
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.81
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.81
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.8
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.8
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.8
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.76
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.76
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.76
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	99.75
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.74
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.74
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.74
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.73
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.73
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.72
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.7
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	99.69
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.69
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	99.65
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	99.65
KOG0930|consensus	395		99.63
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	99.61
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	99.55
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	99.53
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.5
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	99.49
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	99.43
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	99.36
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	99.34
PF15409	89	PH_8: Pleckstrin homology domain	99.22
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	99.03
KOG3531|consensus	1036		98.88
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	98.82
KOG0932|consensus	774		98.79
KOG3640|consensus	1116		98.68
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	98.59
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	98.48
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	98.46
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	98.39
KOG2059|consensus	800		98.39
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	98.33
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	98.27
KOG1117|consensus	1186		98.22
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	98.2
KOG0521|consensus	785		98.17
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	98.14
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	98.14
PF15406	112	PH_6: Pleckstrin homology domain	98.1
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	98.0
KOG1090|consensus	1732		97.97
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	97.92
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	97.83
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	97.8
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	97.79
KOG4424|consensus	623		97.78
PTZ00267	478	NIMA-related protein kinase; Provisional	97.64
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	97.61
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	97.59
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	97.49
PLN02866	1068	phospholipase D	97.48
KOG3751|consensus	622		97.44
KOG0690|consensus	516		97.39
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	97.33
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	97.25
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	97.22
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	96.94
PTZ00283	496	serine/threonine protein kinase; Provisional	96.84
KOG1117|consensus	1186		96.46
KOG3727|consensus	664		96.37
PF15405	135	PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.	96.18
KOG0248|consensus	936		96.13
cd01255	160	PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM	96.03
KOG1738|consensus	638		95.96
KOG3549|consensus	505		95.74
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	95.73
cd01248	115	PH_PLC Phospholipase C (PLC) pleckstrin homology (	95.64
KOG1739|consensus	611		95.6
KOG1264|consensus	1267		95.51
KOG4236|consensus	888		95.11
KOG3543|consensus	1218		94.96
KOG1451|consensus	812		94.84
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	94.74
PF15408	104	PH_7: Pleckstrin homology domain	94.09
KOG4407|consensus	1973		93.96
KOG4424|consensus	623		93.81
KOG0705|consensus	749		92.9
KOG4807|consensus	593		92.16
KOG0517|consensus	2473		91.66
PF08458	110	PH_2: Plant pleckstrin homology-like region; Inter	91.06
KOG3523|consensus	695		90.71
PF15411	116	PH_10: Pleckstrin homology domain	90.07
KOG2070|consensus	661		89.89
KOG3520|consensus	1167		86.46
KOG3723|consensus	851		85.63
PF15404	185	PH_4: Pleckstrin homology domain	83.35
PF12480	77	DUF3699: Protein of unknown function (DUF3699) ; I	80.93
KOG3531|consensus	1036		80.6

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.88  E-value=2.4e-22  Score=128.76  Aligned_cols=78  Identities=28%  Similarity=0.399  Sum_probs=69.2

Q ss_pred             ccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      .+++-|+||+++.|+||+++++++|.|.|+|++++|..+.+   .+++++|+|.+++.|+|+|+|+|++|+++||+||+.
T Consensus        19 ~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~---~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~   95 (96)
T cd01260          19 KWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFTIESAKE---VKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLIT   95 (96)
T ss_pred             CceeEEEEEECCEEEEECCCCCCccceEEEccCCEEEEchh---cCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence            34445899999999999999999999999999999876644   257899999988779999999999999999999987


Q ss_pred             h
Q psy4640         100 A  100 (109)
Q Consensus       100 a  100 (109)
                      |
T Consensus        96 ~   96 (96)
T cd01260          96 A   96 (96)
T ss_pred             C
Confidence            6

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.83  E-value=7.8e-20  Score=119.34  Aligned_cols=81  Identities=14%  Similarity=0.131  Sum_probs=64.3

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCC----eEEeec-CCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPS----YKISPC-SSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~----~~V~~~-~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~   95 (109)
                      +++=|+||+++.|+||+++.+..|.|.|+|..    |.|... ++....+..++|.|.+++ |+|+|+|+|++|+++||+
T Consensus        16 wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~-Rty~l~a~s~~e~~~Wi~   94 (103)
T cd01251          16 FKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPE-RKFLFACETEQDRREWIA   94 (103)
T ss_pred             ceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeCC-eEEEEECCCHHHHHHHHH
Confidence            34458999999999999999999999999964    445432 221112334599999885 999999999999999999


Q ss_pred             HHHHhhh
Q psy4640          96 ALSLASI  102 (109)
Q Consensus        96 aI~~a~~  102 (109)
                      ||+.|..
T Consensus        95 ai~~v~~  101 (103)
T cd01251          95 AFQNVLS  101 (103)
T ss_pred             HHHHHhc
Confidence            9999864

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.81  E-value=2.2e-19  Score=116.50  Aligned_cols=79  Identities=20%  Similarity=0.209  Sum_probs=66.5

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCC-cccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDD-KVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~-~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      +++=|+||+++.|+||+++.+..|.|.|+|.+++|...++.. ..+++++|.|.+++ |+|+|+|+|++|+++||+||+.
T Consensus        18 WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~-rt~~~~A~s~~e~~~Wi~ai~~   96 (100)
T cd01233          18 WTRRFVVVRRPYLHIYRSDKDPVERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKH-RGYLFQALSDKEMIDWLYALNP   96 (100)
T ss_pred             cEEEEEEEECCEEEEEccCCCccEeeEEEecccEEEEccchhhhcCCCcEEEEECCC-CEEEEEcCCHHHHHHHHHHhhh
Confidence            333489999999999999999999999999999887654421 12468999998765 9999999999999999999976


Q ss_pred             h
Q psy4640         100 A  100 (109)
Q Consensus       100 a  100 (109)
                      .
T Consensus        97 ~   97 (100)
T cd01233          97 L   97 (100)
T ss_pred             h
Confidence            4

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.81  E-value=2.8e-19  Score=116.73  Aligned_cols=81  Identities=17%  Similarity=0.180  Sum_probs=66.2

Q ss_pred             ccccCCceEEeeCCeEEEEcCCCCCccc-EEEEcCCeE-EeecCCCC-cccceeeEEEeeCCceEEEEEcCCHHHHHHHH
Q psy4640          18 KSVGSDLDSIGSRNGLAVTDRFEEEKLL-GSILLPSYK-ISPCSSDD-KVFRKFSFKAEHANMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        18 ~~~~~~~~~vL~~~~L~yyk~~~d~~p~-G~I~L~~~~-V~~~~~~~-~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi   94 (109)
                      |.+.++ |++|+++.|+|||+..+.+|. |.|+|+.|. |..+.+.. ..+++++|+|.+|+ |+|||+|+|++|+++||
T Consensus        17 K~WkrR-wF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~-rt~~l~A~se~e~e~WI   94 (101)
T cd01264          17 KRWKTR-YFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD-KTYILKAKDEKNAEEWL   94 (101)
T ss_pred             ecceeE-EEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEcCC-ceEEEEeCCHHHHHHHH
Confidence            556665 899999999999998776666 999999996 55443321 12447999999887 99999999999999999


Q ss_pred             HHHHHh
Q psy4640          95 NALSLA  100 (109)
Q Consensus        95 ~aI~~a  100 (109)
                      ++|+.|
T Consensus        95 ~~i~~a  100 (101)
T cd01264          95 QCLNIA  100 (101)
T ss_pred             HHHHhh
Confidence            999987

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.80  E-value=4.9e-19  Score=113.98  Aligned_cols=78  Identities=18%  Similarity=0.097  Sum_probs=64.1

Q ss_pred             ccccCCceEEeeC--CeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640          18 KSVGSDLDSIGSR--NGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        18 ~~~~~~~~~vL~~--~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~   95 (109)
                      |.+.+ =|+||++  +.||||+++.+.+|.|.|+|.++.+...+.    .++++|.|.+++ |+|+|+|+|++||++||+
T Consensus        15 K~Wkk-RWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~----~~~~~F~i~t~~-r~y~l~A~s~~e~~~Wi~   88 (95)
T cd01265          15 RGRRS-RWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPR----EEKGRFEIHSNN-EVIALKASSDKQMNYWLQ   88 (95)
T ss_pred             cCcee-EEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCC----CCCCEEEEEcCC-cEEEEECCCHHHHHHHHH
Confidence            34444 4899984  579999999999999999999987654332    236899998765 999999999999999999


Q ss_pred             HHHHhh
Q psy4640          96 ALSLAS  101 (109)
Q Consensus        96 aI~~a~  101 (109)
                      ||+.+.
T Consensus        89 al~~~~   94 (95)
T cd01265          89 ALQSKR   94 (95)
T ss_pred             HHHhhc
Confidence            999863

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.80  E-value=5.9e-19  Score=115.74  Aligned_cols=76  Identities=24%  Similarity=0.267  Sum_probs=62.2

Q ss_pred             ceEEeeCCeEEEEcCCCCC--cccEEEEcCCeE-EeecCCCCc----ccceeeEEEeeCCceEEEEEcCCHHHHHHHHHH
Q psy4640          24 LDSIGSRNGLAVTDRFEEE--KLLGSILLPSYK-ISPCSSDDK----VFRKFSFKAEHANMRTYYFAADTRESMIQWMNA   96 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d~--~p~G~I~L~~~~-V~~~~~~~~----~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~a   96 (109)
                      =|+||++++|+||+++.+.  .|.|.|+|.++. |+.+.+...    .++.++|+|.+++ |+|||.|+|++|+++||+|
T Consensus        24 RwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~-r~~yl~A~s~~er~~WI~a  102 (106)
T cd01238          24 RLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDE-GTLYVFAPTEELRKRWIKA  102 (106)
T ss_pred             EEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCC-CeEEEEcCCHHHHHHHHHH
Confidence            4799999999999998764  899999999886 444443221    1357999999875 8999999999999999999


Q ss_pred             HHHh
Q psy4640          97 LSLA  100 (109)
Q Consensus        97 I~~a  100 (109)
                      |+.+
T Consensus       103 i~~~  106 (106)
T cd01238         103 LKQV  106 (106)
T ss_pred             HHhC
Confidence            9863

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.80  E-value=1.1e-18  Score=117.07  Aligned_cols=81  Identities=17%  Similarity=0.158  Sum_probs=69.2

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCc--------------------eEE
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM--------------------RTY   80 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~--------------------r~y   80 (109)
                      +++-|+||++++|+||+++++.+|.|.|+|.++.|..++.   ..++++|+|..++.                    ++|
T Consensus        16 WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~v~~~~~---~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~   92 (125)
T cd01252          16 WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENVSIREVED---PSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVY   92 (125)
T ss_pred             eEeEEEEEECCEEEEEcCCCCCCceEEEECCCcEEEEccc---CCCCeeEEEECCccccccccccccccccccccCceEE
Confidence            3445899999999999999999999999999998877644   25679999876553                    799


Q ss_pred             EEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640          81 YFAADTRESMIQWMNALSLASILQ  104 (109)
Q Consensus        81 ~fsA~s~~e~~~Wi~aI~~a~~~~  104 (109)
                      +|+|+|++|+++||+||+.++...
T Consensus        93 ~~~A~s~~e~~~Wi~al~~~~~~~  116 (125)
T cd01252          93 RISAANDEEMDEWIKSIKASISPN  116 (125)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999988654

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.76  E-value=7.5e-18  Score=110.51  Aligned_cols=81  Identities=17%  Similarity=0.151  Sum_probs=64.2

Q ss_pred             CCcccccCCceEEee-CCeEEEEcCC-CCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHH
Q psy4640          15 SSRKSVGSDLDSIGS-RNGLAVTDRF-EEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMI   91 (109)
Q Consensus        15 ~~~~~~~~~~~~vL~-~~~L~yyk~~-~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~   91 (109)
                      ...|.+.++ |+||+ +..|+||+++ .+..|+|.|.|+.|. |..+.  +..+++++|.|.+++ |+|||.|+|++|++
T Consensus        19 ~~~K~WkrR-WFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~--~~~~~~~~f~I~tp~-R~f~l~Aete~E~~   94 (104)
T cd01236          19 HRSKRWQRR-WFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAE--ARTGQKFSICILTPD-KEHFIKAETKEEIS   94 (104)
T ss_pred             eeeccccce-EEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecc--cccCCccEEEEECCC-ceEEEEeCCHHHHH
Confidence            345777776 88997 5788888776 478999999998886 44332  223457999999886 99999999999999


Q ss_pred             HHHHHHHH
Q psy4640          92 QWMNALSL   99 (109)
Q Consensus        92 ~Wi~aI~~   99 (109)
                      +||++|+.
T Consensus        95 ~Wi~~l~~  102 (104)
T cd01236          95 WWLNMLMV  102 (104)
T ss_pred             HHHHHHHh
Confidence            99999974

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=99.76  E-value=8.5e-18  Score=109.19  Aligned_cols=74  Identities=16%  Similarity=0.100  Sum_probs=62.6

Q ss_pred             ceEEeeCCeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          24 LDSIGSRNGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      =|++|+++.|+||+++. ..|.|+|+|.... |+.+.+. ...++|+|+|.+++ |+|||+|+|++|+++||+||+.+
T Consensus        24 RwF~Lt~~~L~Y~k~~~-~~~~g~I~L~~i~~ve~v~~~-~~~~~~~fqivt~~-r~~yi~a~s~~E~~~Wi~al~k~   98 (98)
T cd01244          24 RYFQLTTTHLSWAKDVQ-CKKSALIKLAAIKGTEPLSDK-SFVNVDIITIVCED-DTMQLQFEAPVEATDWLNALEKQ   98 (98)
T ss_pred             eEEEECCCEEEEECCCC-CceeeeEEccceEEEEEcCCc-ccCCCceEEEEeCC-CeEEEECCCHHHHHHHHHHHhcC
Confidence            37899999999999886 7999999998875 4555442 23457999999986 89999999999999999999874

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.76  E-value=6.9e-18  Score=110.13  Aligned_cols=77  Identities=16%  Similarity=0.075  Sum_probs=64.0

Q ss_pred             ccccCCceEEeeCC------eEEEEcCCCC-----CcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcC
Q psy4640          18 KSVGSDLDSIGSRN------GLAVTDRFEE-----EKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAAD   85 (109)
Q Consensus        18 ~~~~~~~~~vL~~~------~L~yyk~~~d-----~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~   85 (109)
                      |.+.++ |+||+++      .|+||+++.+     ..|.|+|+|.+|. |...++   .+++|+|.|.+++ |+|+|+|+
T Consensus        12 K~~kkR-wFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d---~k~~~~f~i~t~d-r~f~l~ae   86 (101)
T cd01257          12 KSMHKR-FFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD---AKHRHLIALYTRD-EYFAVAAE   86 (101)
T ss_pred             cCcEeE-EEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc---cccCeEEEEEeCC-ceEEEEeC
Confidence            566665 8999988      7999999864     7899999999996 443322   2457999999887 89999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy4640          86 TRESMIQWMNALSL   99 (109)
Q Consensus        86 s~~e~~~Wi~aI~~   99 (109)
                      |++|+++||++|..
T Consensus        87 se~E~~~Wi~~i~~  100 (101)
T cd01257          87 NEAEQDSWYQALLE  100 (101)
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999999964

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=99.75  E-value=1.2e-17  Score=108.45  Aligned_cols=79  Identities=16%  Similarity=0.172  Sum_probs=66.5

Q ss_pred             cccCCceEEeeC----CeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCc-eEEEEEcCCHHHHHHH
Q psy4640          19 SVGSDLDSIGSR----NGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM-RTYYFAADTRESMIQW   93 (109)
Q Consensus        19 ~~~~~~~~vL~~----~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~-r~y~fsA~s~~e~~~W   93 (109)
                      +.+++.|++|.+    ++|+||+++.+.+|.|.|+|+++.|..+.+. ..+++|||+|..+.. .+||++|++ +|+++|
T Consensus        14 K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~~V~~v~ds-~~~r~~cFel~~~~~~~~y~~~a~~-~er~~W   91 (98)
T cd01245          14 KLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDAYLYPVHDS-LFGRPNCFQIVERALPTVYYSCRSS-EERDKW   91 (98)
T ss_pred             cccceeEEEEecCCCCceEEEEcCCCCCCccceeeccccEEEEcccc-ccCCCeEEEEecCCCCeEEEEeCCH-HHHHHH
Confidence            344556889976    9999999999999999999999988776552 236789999987753 699999999 999999


Q ss_pred             HHHHHH
Q psy4640          94 MNALSL   99 (109)
Q Consensus        94 i~aI~~   99 (109)
                      |++|+.
T Consensus        92 i~~l~~   97 (98)
T cd01245          92 IESLQA   97 (98)
T ss_pred             HHHHhc
Confidence            999986

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.74  E-value=2.4e-17  Score=105.57  Aligned_cols=76  Identities=18%  Similarity=0.250  Sum_probs=62.2

Q ss_pred             ccccCCceEEeeCCeEEEEcCCCC--CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640          18 KSVGSDLDSIGSRNGLAVTDRFEE--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        18 ~~~~~~~~~vL~~~~L~yyk~~~d--~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~   95 (109)
                      |.+.++ |+||+++.|+||+++.+  ..|.|.|+|.+|.|... +    .+++.|.|.....|+|+|.|+|++|+++||+
T Consensus        13 k~Wk~R-wFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~-~----~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~   86 (91)
T cd01247          13 NGWQDR-YFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAH-E----FDENRFDISVNENVVWYLRAENSQSRLLWMD   86 (91)
T ss_pred             CCCceE-EEEEECCEEEEEecCccCcCCCcEEEECcccEEEcC-C----CCCCEEEEEeCCCeEEEEEeCCHHHHHHHHH
Confidence            444444 78999999999999876  45799999999977643 2    2357899976666999999999999999999


Q ss_pred             HHHH
Q psy4640          96 ALSL   99 (109)
Q Consensus        96 aI~~   99 (109)
                      ||++
T Consensus        87 al~~   90 (91)
T cd01247          87 SVVR   90 (91)
T ss_pred             HHhh
Confidence            9985

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=99.74  E-value=3.2e-17  Score=102.72  Aligned_cols=76  Identities=22%  Similarity=0.177  Sum_probs=65.7

Q ss_pred             ccCCceEEeeCCeEEEEcCCCCC--cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEEE--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL   97 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d~--~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI   97 (109)
                      .+++.|+||+++.|+||+++.+.  .|.|.|+|.+++|... +    .++++|.|.+++.++|+|+|+|.+|+++||.||
T Consensus        14 ~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~-~----~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al   88 (91)
T cd01246          14 GWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISED-D----SDDKCFTIDTGGDKTLHLRANSEEERQRWVDAL   88 (91)
T ss_pred             CceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEEC-C----CCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHH
Confidence            34456899999999999999887  8999999999987653 2    237899998887799999999999999999999


Q ss_pred             HHh
Q psy4640          98 SLA  100 (109)
Q Consensus        98 ~~a  100 (109)
                      +.|
T Consensus        89 ~~a   91 (91)
T cd01246          89 ELA   91 (91)
T ss_pred             HhC
Confidence            876

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=99.74  E-value=9.3e-18  Score=112.85  Aligned_cols=84  Identities=18%  Similarity=0.144  Sum_probs=65.4

Q ss_pred             CcccccCCceEEeeCCeEEEEcCCCC---CcccEEEEcCCeEEeecC--CCCcccceeeEEEee--CCc-----------
Q psy4640          16 SRKSVGSDLDSIGSRNGLAVTDRFEE---EKLLGSILLPSYKISPCS--SDDKVFRKFSFKAEH--ANM-----------   77 (109)
Q Consensus        16 ~~~~~~~~~~~vL~~~~L~yyk~~~d---~~p~G~I~L~~~~V~~~~--~~~~~~k~~~F~i~~--~~~-----------   77 (109)
                      ..|.|.+ -|+||++++|+||+.+.+   +.|+|.|+|.+|.+..+.  +.+.+.+++.|.|..  +..           
T Consensus        15 ~~k~W~R-RWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~   93 (122)
T cd01263          15 GFGAWHR-RWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQC   93 (122)
T ss_pred             CCCCceE-EEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeecc
Confidence            3355555 599999999999997776   679999999999865542  234568899999953  321           


Q ss_pred             -----e-EEEEEcCCHHHHHHHHHHHHHh
Q psy4640          78 -----R-TYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        78 -----r-~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                           | -|+|+|||++|+++||+||+.|
T Consensus        94 ~~~~~r~~~~lsaDt~eer~~W~~ain~~  122 (122)
T cd01263          94 RRGIERLRVMLSADTKEERQTWLSLLNST  122 (122)
T ss_pred             CCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence                 1 2789999999999999999875

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.73  E-value=2.4e-17  Score=108.10  Aligned_cols=80  Identities=19%  Similarity=0.119  Sum_probs=62.7

Q ss_pred             cccCCceEEeeCCe-------EEEEcCCCCCcccEEEEcCCeEEeecCC---CCcccceeeEEEeeCCceEEEEEcCCHH
Q psy4640          19 SVGSDLDSIGSRNG-------LAVTDRFEEEKLLGSILLPSYKISPCSS---DDKVFRKFSFKAEHANMRTYYFAADTRE   88 (109)
Q Consensus        19 ~~~~~~~~vL~~~~-------L~yyk~~~d~~p~G~I~L~~~~V~~~~~---~~~~~k~~~F~i~~~~~r~y~fsA~s~~   88 (109)
                      .+.+ =|+||+++.       |+||+++.+++|.|.|+|+.|.+.....   .......+.|.|.++. |+|||+|+|++
T Consensus        18 ~Wkr-RwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~-r~y~l~A~s~e   95 (108)
T cd01266          18 KWVR-RYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIV-RDLYLVAKNEE   95 (108)
T ss_pred             CcEE-EEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEEEeCC-ccEEEEECCHH
Confidence            4444 389999876       6999999999999999999986543211   1112346789998765 99999999999


Q ss_pred             HHHHHHHHHHHh
Q psy4640          89 SMIQWMNALSLA  100 (109)
Q Consensus        89 e~~~Wi~aI~~a  100 (109)
                      ||++||++|+..
T Consensus        96 e~~~Wi~~I~~~  107 (108)
T cd01266          96 EMTLWVNCICKL  107 (108)
T ss_pred             HHHHHHHHHHhh
Confidence            999999999864

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.73  E-value=7.9e-17  Score=103.43  Aligned_cols=82  Identities=22%  Similarity=0.240  Sum_probs=62.8

Q ss_pred             ccccCCceEEeeC--CeEEEEcCCCCCcccEEEEcCCeE-EeecCCC----CcccceeeEEEeeCCceEEEEEcCCHHHH
Q psy4640          18 KSVGSDLDSIGSR--NGLAVTDRFEEEKLLGSILLPSYK-ISPCSSD----DKVFRKFSFKAEHANMRTYYFAADTRESM   90 (109)
Q Consensus        18 ~~~~~~~~~vL~~--~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~----~~~~k~~~F~i~~~~~r~y~fsA~s~~e~   90 (109)
                      +.+.+ -|+||.+  +.|+||+++.+.+|.|.|+|.+++ |....+.    ....+.++|.|.++ .|+|+|.|+|++|+
T Consensus        13 k~Wkk-RwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~-~r~~~~~a~s~~e~   90 (101)
T cd01235          13 KGWKP-RWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTS-KRTYNFLAENINEA   90 (101)
T ss_pred             CCccc-eEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeC-CceEEEECCCHHHH
Confidence            34444 4899984  599999999999999999998875 4432221    11134578998765 59999999999999


Q ss_pred             HHHHHHHHHhh
Q psy4640          91 IQWMNALSLAS  101 (109)
Q Consensus        91 ~~Wi~aI~~a~  101 (109)
                      ++||+||+.++
T Consensus        91 ~~Wi~ai~~~i  101 (101)
T cd01235          91 QRWKEKIQQCI  101 (101)
T ss_pred             HHHHHHHHhhC
Confidence            99999998864

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=99.72  E-value=9.7e-17  Score=101.04  Aligned_cols=79  Identities=18%  Similarity=0.249  Sum_probs=66.3

Q ss_pred             cccCCceEEeeCCeEEEEcCCCC--CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHH
Q psy4640          19 SVGSDLDSIGSRNGLAVTDRFEE--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA   96 (109)
Q Consensus        19 ~~~~~~~~vL~~~~L~yyk~~~d--~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~a   96 (109)
                      ..+++-|+||+++.|+||+++.+  ..+.+.|+|.+|+|...+..  ..++++|.|.+++ ++|+|+|+|++|+++||.|
T Consensus        14 ~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~--~~~~~~f~i~~~~-~~~~f~a~s~~~~~~Wi~a   90 (94)
T cd01250          14 KEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQ--PDRRFCFEVISPT-KTWHFQADSEEERDDWISA   90 (94)
T ss_pred             CCceEEEEEEeCCeEEEEcCCcccccccceEEeccceEEecCccc--cCCceEEEEEcCC-cEEEEECCCHHHHHHHHHH
Confidence            34455689999999999999876  67889999999988766542  1368999999877 9999999999999999999


Q ss_pred             HHHh
Q psy4640          97 LSLA  100 (109)
Q Consensus        97 I~~a  100 (109)
                      |+.+
T Consensus        91 l~~~   94 (94)
T cd01250          91 IQES   94 (94)
T ss_pred             HhcC
Confidence            9864

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=99.70  E-value=2.3e-16  Score=102.24  Aligned_cols=79  Identities=18%  Similarity=0.227  Sum_probs=64.0

Q ss_pred             ccCCceEEeeCCeEEEEcCCCCC--cccE--EEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEEE--KLLG--SILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d~--~p~G--~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~   95 (109)
                      .++..|+||+++.|+||+++...  .+.+  .|+|.++.|..+.+.  .+++++|.|..++.++|+|+|+|++||++||.
T Consensus        22 ~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~--~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~   99 (104)
T cd01253          22 SWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDY--TKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVR   99 (104)
T ss_pred             CcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCc--ccCceEEEEEecCCCEEEEECCCHHHHHHHHH
Confidence            34556899999999999988643  4445  777888888776442  35679999987778999999999999999999


Q ss_pred             HHHHh
Q psy4640          96 ALSLA  100 (109)
Q Consensus        96 aI~~a  100 (109)
                      ||+.|
T Consensus       100 aL~~~  104 (104)
T cd01253         100 ALKSA  104 (104)
T ss_pred             HHhcC
Confidence            99864

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=99.69  E-value=2.9e-16  Score=104.91  Aligned_cols=83  Identities=12%  Similarity=0.149  Sum_probs=69.7

Q ss_pred             ccCCceEEeeCCeEEEEcCCCC-------CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEE-------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   92 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d-------~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~   92 (109)
                      -|+.+++||+++.|+.|||+..       +.+...|.|.++.++++.+.  .+++++|+|..++.+.|+|+|.|++||++
T Consensus        25 ~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy--~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~  102 (117)
T cd01230          25 SWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDY--SKKPHVFRLRTADWREFLFQTSSLKELQS  102 (117)
T ss_pred             cceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccc--cCCCcEEEEEcCCCCEEEEECCCHHHHHH
Confidence            4445679999999999999964       45678999999887665443  47899999999888999999999999999


Q ss_pred             HHHHHHHhhhhc
Q psy4640          93 WMNALSLASILQ  104 (109)
Q Consensus        93 Wi~aI~~a~~~~  104 (109)
                      ||++|+.|+...
T Consensus       103 Wi~~I~~~~~~~  114 (117)
T cd01230         103 WIERINVVAAAF  114 (117)
T ss_pred             HHHHHHHHHHhc
Confidence            999999987543

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=99.69  E-value=7e-16  Score=96.87  Aligned_cols=80  Identities=25%  Similarity=0.315  Sum_probs=69.4

Q ss_pred             CCceEEeeCCeEEEEcCCC---CCcccEEEEcCCeEEeecCCCC---cccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640          22 SDLDSIGSRNGLAVTDRFE---EEKLLGSILLPSYKISPCSSDD---KVFRKFSFKAEHANMRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~---d~~p~G~I~L~~~~V~~~~~~~---~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~   95 (109)
                      ++.|+||.++.|+||+++.   +..|.+.|+|.++.|....+.+   ....+++|.|.+++.++|+|+|+|++|+.+||+
T Consensus        18 k~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~   97 (104)
T PF00169_consen   18 KKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQ   97 (104)
T ss_dssp             EEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHH
T ss_pred             EEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHH
Confidence            3358999999999999998   6899999999999987765532   235689999999887799999999999999999


Q ss_pred             HHHHhh
Q psy4640          96 ALSLAS  101 (109)
Q Consensus        96 aI~~a~  101 (109)
                      +|+.|+
T Consensus        98 ~i~~~~  103 (104)
T PF00169_consen   98 AIQKAI  103 (104)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999986

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=99.65  E-value=8.2e-16  Score=99.50  Aligned_cols=81  Identities=15%  Similarity=0.105  Sum_probs=69.5

Q ss_pred             ccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeC-------CceEEEEEcCCHHHHHH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA-------NMRTYYFAADTRESMIQ   92 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~-------~~r~y~fsA~s~~e~~~   92 (109)
                      ..++.|+||+++||+|||+.++++|.|+|||+|..+..++.. ..+++|+|.|-.|       +.++.-++|+|++|++.
T Consensus        18 gsK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~g-f~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vds   96 (110)
T cd01256          18 GSKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGG-FMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDS   96 (110)
T ss_pred             CCcceEEEEecceeeeecccccccccceeeccccEEEeeccc-ccCCCcEEEEEcCcccccccchheeeecCCCHHHHHH
Confidence            346678999999999999999999999999999999887653 3567899999755       35677899999999999


Q ss_pred             HHHHHHHhh
Q psy4640          93 WMNALSLAS  101 (109)
Q Consensus        93 Wi~aI~~a~  101 (109)
                      |.+.+-+|-
T Consensus        97 wkasflrag  105 (110)
T cd01256          97 WKASFLRAG  105 (110)
T ss_pred             HHHHHHhcc
Confidence            999987764

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=99.65  E-value=1.3e-15  Score=99.95  Aligned_cols=83  Identities=18%  Similarity=0.198  Sum_probs=65.2

Q ss_pred             cccCCceEEeeCCeEEEEcCCCCCc--ccEEEEcCCeEEeecCCCCcccceeeEEEeeC---CceEEEEEcCCHHHHHHH
Q psy4640          19 SVGSDLDSIGSRNGLAVTDRFEEEK--LLGSILLPSYKISPCSSDDKVFRKFSFKAEHA---NMRTYYFAADTRESMIQW   93 (109)
Q Consensus        19 ~~~~~~~~vL~~~~L~yyk~~~d~~--p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~---~~r~y~fsA~s~~e~~~W   93 (109)
                      +..++-|++|+++.|+|||++.+..  |.+.|.|.+|+|......  ..++|+|++..|   +.|+|+|.|+|++++.+|
T Consensus        18 K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~~--~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~W   95 (106)
T cd01237          18 KGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVNV--AQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKW   95 (106)
T ss_pred             hhheeEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEcccccc--cccceEEEEecCCccCCeEEEEECCCHHHHHHH
Confidence            4466678999999999999887654  556666689987653321  244699998743   468999999999999999


Q ss_pred             HHHHHHhhhh
Q psy4640          94 MNALSLASIL  103 (109)
Q Consensus        94 i~aI~~a~~~  103 (109)
                      |+|++.|+..
T Consensus        96 maa~rlas~g  105 (106)
T cd01237          96 MAACRLASKG  105 (106)
T ss_pred             HHHHHHhhCC
Confidence            9999999863

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0930|consensus

Probab=99.63  E-value=1.3e-15  Score=114.62  Aligned_cols=81  Identities=20%  Similarity=0.148  Sum_probs=69.1

Q ss_pred             ccccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeC---------------------C
Q psy4640          18 KSVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA---------------------N   76 (109)
Q Consensus        18 ~~~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~---------------------~   76 (109)
                      |+|-+ -|+||++||||||.-.+|++|.|.|+|++..|..+++   .++++||+|..+                     .
T Consensus       275 ktWKr-RWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~Ved---P~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~  350 (395)
T KOG0930|consen  275 KTWKR-RWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVED---PKKPNCFELYIPSNKGQVIKACKTEADGRVVEGN  350 (395)
T ss_pred             cchhh-eeEEeecceeeeeeeccCCCCCcceeccccceeeccC---CCCCCeEEEecCCCCcCeeeeecccCCceeEecc
Confidence            44444 5999999999999999999999999999998887765   478999998532                     2


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          77 MRTYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        77 ~r~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      +-.|-++|.+.+|+++||++|+.++.
T Consensus       351 H~vYrIsA~~~Ee~~~Wi~sI~a~is  376 (395)
T KOG0930|consen  351 HSVYRISAPTPEEKDEWIKSIKAAIS  376 (395)
T ss_pred             ceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence            45899999999999999999998764

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=99.61  E-value=5.6e-15  Score=98.61  Aligned_cols=79  Identities=23%  Similarity=0.229  Sum_probs=57.3

Q ss_pred             cCCceEEeeCCeEEEEcCCC--------------CCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCC
Q psy4640          21 GSDLDSIGSRNGLAVTDRFE--------------EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADT   86 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~--------------d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s   86 (109)
                      ++.+++||++..|+.||++.              ...|.+.|.|.++.+..+.+  ..+|+|+|+|.+++...|+|+|.|
T Consensus        26 Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~d--Y~Kr~~VFrL~~~dg~e~Lfqa~~  103 (119)
T PF15410_consen   26 WKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASD--YTKRKNVFRLRTADGSEYLFQASD  103 (119)
T ss_dssp             EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETT--BTTCSSEEEEE-TTS-EEEEE-SS
T ss_pred             ccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcc--cccCCeEEEEEeCCCCEEEEECCC
Confidence            34466899999999999832              23466789999998887654  457899999999888999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy4640          87 RESMIQWMNALSLAS  101 (109)
Q Consensus        87 ~~e~~~Wi~aI~~a~  101 (109)
                      ++||++||++|+.++
T Consensus       104 ~~~m~~Wi~~IN~~A  118 (119)
T PF15410_consen  104 EEEMNEWIDAINYAA  118 (119)
T ss_dssp             HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999999864

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=99.55  E-value=7.9e-14  Score=93.38  Aligned_cols=80  Identities=20%  Similarity=0.241  Sum_probs=66.5

Q ss_pred             ccCCceEEeeCCeEEEEcCCCCCcccEEEEcC-CeEEeecCCC---------CcccceeeEEEeeCCceEEEEEcCCHHH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEEEKLLGSILLP-SYKISPCSSD---------DKVFRKFSFKAEHANMRTYYFAADTRES   89 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~-~~~V~~~~~~---------~~~~k~~~F~i~~~~~r~y~fsA~s~~e   89 (109)
                      .++.-|+||++..|.||+++.+..|.|.|.|+ ++.|+.....         +...+.+.|+|.++. |+|.|.|+|+.+
T Consensus        32 ~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~-R~~~l~a~s~~~  110 (121)
T cd01254          32 RWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSN-RSLKLKCKSSRK  110 (121)
T ss_pred             CCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCC-cEEEEEeCCHHH
Confidence            34556899999999999999999999999994 7777654331         223567999998776 999999999999


Q ss_pred             HHHHHHHHHHh
Q psy4640          90 MIQWMNALSLA  100 (109)
Q Consensus        90 ~~~Wi~aI~~a  100 (109)
                      +++||++|+.|
T Consensus       111 ~~~Wi~~i~~a  121 (121)
T cd01254         111 LKQWMASIEDA  121 (121)
T ss_pred             HHHHHHHHHhC
Confidence            99999999976

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=99.53  E-value=8.9e-14  Score=90.38  Aligned_cols=84  Identities=19%  Similarity=0.155  Sum_probs=68.6

Q ss_pred             CcccccCCceEEeeCCeEEEEcCCCCC---cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy4640          16 SRKSVGSDLDSIGSRNGLAVTDRFEEE---KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   92 (109)
Q Consensus        16 ~~~~~~~~~~~vL~~~~L~yyk~~~d~---~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~   92 (109)
                      .+|....+.+.++.|.+||+.+...+.   ++.|.|+|++++|+.+++.  .+.+|+|.|..+. ++|.|+|.|++|+++
T Consensus        12 ~~k~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~--~~~~~~F~I~~~~-ks~~l~A~s~~Ek~~   88 (99)
T cd01220          12 SKKGLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHE--WGVPHCFTIFGGQ-CAITVAASTRAEKEK   88 (99)
T ss_pred             eCCCCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCC--cCCceeEEEEcCC-eEEEEECCCHHHHHH
Confidence            445556667788999999988876554   5899999999998876542  2457999998664 899999999999999


Q ss_pred             HHHHHHHhhh
Q psy4640          93 WMNALSLASI  102 (109)
Q Consensus        93 Wi~aI~~a~~  102 (109)
                      ||++|+.|+.
T Consensus        89 Wi~~i~~aI~   98 (99)
T cd01220          89 WLADLSKAIA   98 (99)
T ss_pred             HHHHHHHHhh
Confidence            9999999874

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.50  E-value=1.5e-13  Score=89.41  Aligned_cols=80  Identities=14%  Similarity=0.136  Sum_probs=56.4

Q ss_pred             ccccCCceEEee-CCeEEEEcCCCCCcccEEEEcCCeEEeecCC--CCcccceeeEEEee-----CCceEEEEEcCCHHH
Q psy4640          18 KSVGSDLDSIGS-RNGLAVTDRFEEEKLLGSILLPSYKISPCSS--DDKVFRKFSFKAEH-----ANMRTYYFAADTRES   89 (109)
Q Consensus        18 ~~~~~~~~~vL~-~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~--~~~~~k~~~F~i~~-----~~~r~y~fsA~s~~e   89 (109)
                      +.+.+ -|++|+ ++.|+||+++....+.|.|+|.+++|..+..  .+ ..++++|.|..     ...|+|  +|+|++|
T Consensus        15 ~~Wk~-R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~-~~~~~~F~i~~~~~~~~~~r~f--~a~s~ee   90 (102)
T cd01241          15 KTWRP-RYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTE-RPRPNTFIIRCLQWTTVIERTF--HVESPEE   90 (102)
T ss_pred             CCCee-EEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeecc-CCCcceEEEEeccCCcccCEEE--EeCCHHH
Confidence            34444 489998 7889988887655556888888877644322  11 24568999962     123544  6999999


Q ss_pred             HHHHHHHHHHhh
Q psy4640          90 MIQWMNALSLAS  101 (109)
Q Consensus        90 ~~~Wi~aI~~a~  101 (109)
                      +++||+||+.++
T Consensus        91 ~~eWi~ai~~v~  102 (102)
T cd01241          91 REEWIHAIQTVA  102 (102)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998763

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>smart00233 PH Pleckstrin homology domain

Probab=99.49  E-value=7.6e-13  Score=81.48  Aligned_cols=82  Identities=21%  Similarity=0.225  Sum_probs=67.0

Q ss_pred             ccCCceEEeeCCeEEEEcCCCC---CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEE---EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA   96 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d---~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~a   96 (109)
                      .++..+++|.+++|+||+++.+   ..+.+.|+|.++.|....+.......++|.|..++..+|+|.|+|++|+++|+++
T Consensus        17 ~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~   96 (102)
T smart00233       17 SWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYLLQAESEEEREEWVDA   96 (102)
T ss_pred             CceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEEEEcCCHHHHHHHHHH
Confidence            3445689999999999998876   5789999999998776544211235789999887756999999999999999999


Q ss_pred             HHHhh
Q psy4640          97 LSLAS  101 (109)
Q Consensus        97 I~~a~  101 (109)
                      |+.++
T Consensus        97 i~~~~  101 (102)
T smart00233       97 LRKAI  101 (102)
T ss_pred             HHHhh
Confidence            99875

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=99.43  E-value=2.6e-12  Score=78.38  Aligned_cols=78  Identities=23%  Similarity=0.231  Sum_probs=65.2

Q ss_pred             cCCceEEeeCCeEEEEcCCCC---CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEE---EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL   97 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d---~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI   97 (109)
                      +.+.+++|.++.|++|+...+   ..+.+.|+|.++.|.......  +..++|.|...+.+.|+|.|+|++|+++|+++|
T Consensus        16 w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~--~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l   93 (96)
T cd00821          16 WKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDS--GRKNCFEIRTPDGRSYLLQAESEEEREEWIEAL   93 (96)
T ss_pred             ccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcC--CCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHH
Confidence            345688999999999998876   689999999998887654421  357899998766589999999999999999999


Q ss_pred             HHh
Q psy4640          98 SLA  100 (109)
Q Consensus        98 ~~a  100 (109)
                      +.|
T Consensus        94 ~~~   96 (96)
T cd00821          94 QSA   96 (96)
T ss_pred             hcC
Confidence            864

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=99.36  E-value=1.4e-11  Score=75.63  Aligned_cols=80  Identities=20%  Similarity=0.226  Sum_probs=65.7

Q ss_pred             cccCCceEEeeCCeEEEEcCCCCCccc-EEEEcCCeEEeecCCCCcccceeeEEEeeCC--ceEEEEEcCCHHHHHHHHH
Q psy4640          19 SVGSDLDSIGSRNGLAVTDRFEEEKLL-GSILLPSYKISPCSSDDKVFRKFSFKAEHAN--MRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        19 ~~~~~~~~vL~~~~L~yyk~~~d~~p~-G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~--~r~y~fsA~s~~e~~~Wi~   95 (109)
                      ..++..+++|.++.|+||+++.+..+. +.++|.+.+|....+.+  ..+++|.|....  .+.|+|+|+|++|++.|++
T Consensus        17 ~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~--~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~   94 (99)
T cd00900          17 KRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEISVEEDPDGS--DDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVE   94 (99)
T ss_pred             cCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceEEEECCCCC--CCCceEEEECCCCCcEEEEEEcCCHHHHHHHHH
Confidence            344456899999999999999887777 89999988876654321  457899998774  7999999999999999999


Q ss_pred             HHHHh
Q psy4640          96 ALSLA  100 (109)
Q Consensus        96 aI~~a  100 (109)
                      +|+.|
T Consensus        95 al~~~   99 (99)
T cd00900          95 ALQQA   99 (99)
T ss_pred             HHhcC
Confidence            99875

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=99.34  E-value=1.6e-11  Score=79.66  Aligned_cols=74  Identities=15%  Similarity=0.069  Sum_probs=60.1

Q ss_pred             eEEeeCCeEEEEcCCC-----CCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          25 DSIGSRNGLAVTDRFE-----EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        25 ~~vL~~~~L~yyk~~~-----d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      +..|-++.|.|++...     .-.+.+.|+|.++.|....+   ...+|+|.|..++ |+|+++|+|++|+++||+||+.
T Consensus        22 yffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~---~~~~~~F~I~~~~-rsf~l~A~s~eEk~~W~~ai~~   97 (101)
T cd01219          22 YLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDN---LERPHSFLVSGKQ-RCLELQARTQKEKNDWVQAIFS   97 (101)
T ss_pred             EEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCC---CCcCceEEEecCC-cEEEEEcCCHHHHHHHHHHHHH
Confidence            6788777999998532     23567899999998875432   2568999998766 9999999999999999999999


Q ss_pred             hhh
Q psy4640         100 ASI  102 (109)
Q Consensus       100 a~~  102 (109)
                      |+.
T Consensus        98 ~i~  100 (101)
T cd01219          98 IID  100 (101)
T ss_pred             Hhh
Confidence            874

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15409 PH_8: Pleckstrin homology domain

Probab=99.22  E-value=2.3e-10  Score=73.13  Aligned_cols=69  Identities=20%  Similarity=0.234  Sum_probs=58.7

Q ss_pred             eEEe--eCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          25 DSIG--SRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        25 ~~vL--~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      ++||  ..+.|-||+++++....|.|+|..+.|+.- .     +...|.|.. +..+|+|.|.|++|.+.|++||+.|
T Consensus        18 yFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~-~-----~~~~I~ids-g~~i~hLKa~s~~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   18 YFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISAN-K-----KSRRIDIDS-GDEIWHLKAKSQEDFQRWVSALQKA   88 (89)
T ss_pred             EEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEec-C-----CCCEEEEEc-CCeEEEEEcCCHHHHHHHHHHHHhc
Confidence            5788  999999999998888999999988876542 2     245789875 5689999999999999999999986

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=99.03  E-value=1.9e-09  Score=71.29  Aligned_cols=85  Identities=18%  Similarity=0.085  Sum_probs=46.1

Q ss_pred             CCCCcccccCCceEEee-CCeEEEEcCCCC-------------CcccEEEEcC--CeEEee---cCCCCcccceeeEEEe
Q psy4640          13 SPSSRKSVGSDLDSIGS-RNGLAVTDRFEE-------------EKLLGSILLP--SYKISP---CSSDDKVFRKFSFKAE   73 (109)
Q Consensus        13 ~~~~~~~~~~~~~~vL~-~~~L~yyk~~~d-------------~~p~G~I~L~--~~~V~~---~~~~~~~~k~~~F~i~   73 (109)
                      +++.++.+.++ |+||. ++.|.|||.+.+             ....|.+...  -+.+..   ..+. ...-..+|.|.
T Consensus         9 ~~~~~kgWk~R-wFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~   86 (112)
T PF15413_consen    9 GNKFGKGWKKR-WFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPF-GEIHLKVFSIF   86 (112)
T ss_dssp             -TTS-S--EEE-EEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T---SS-SSEEEEEE
T ss_pred             cCCCCcCcccc-EEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcc-cCcCCCCcEEE
Confidence            34444545554 78888 999999999332             2233333321  111111   1111 11123567776


Q ss_pred             eCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          74 HANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        74 ~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      ++ .|+|+|.|++.+|+.+||+||..|
T Consensus        87 T~-~kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   87 TP-TKTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             -S-S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred             CC-CcEEEEEECCHHHHHHHHHHHHhC
Confidence            66 589999999999999999999876

>KOG3531|consensus

Probab=98.88  E-value=8.4e-10  Score=92.40  Aligned_cols=85  Identities=20%  Similarity=0.291  Sum_probs=75.9

Q ss_pred             cccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHH
Q psy4640          19 SVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS   98 (109)
Q Consensus        19 ~~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~   98 (109)
                      +.+-+||.|++.-|||+||+-+|..|+.++||-||+|.+..+.+...|.|+|++.... ..|||.|++.-..++||+.|+
T Consensus       938 sgwqkLwvvft~fcl~fyKS~qD~~~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~-hvyffraes~yt~~rw~evi~ 1016 (1036)
T KOG3531|consen  938 SGWQKLWVVFTNFCLFFYKSHQDSEPLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKS-HVYFFRAESYYTFERWMEVIT 1016 (1036)
T ss_pred             ccceeeeeeecceeeEeecccccccccccccccccccCCCCCCCCcchhheeeeehhh-hHHHHhhhhhhhhhhHHHHhh
Confidence            4566789999999999999999999999999999999876666677889999998876 589999999999999999999


Q ss_pred             Hhhhhc
Q psy4640          99 LASILQ  104 (109)
Q Consensus        99 ~a~~~~  104 (109)
                      .|+..+
T Consensus      1017 ~a~~s~ 1022 (1036)
T KOG3531|consen 1017 DAPSSA 1022 (1036)
T ss_pred             cCCccC
Confidence            987654

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=98.82  E-value=7.3e-08  Score=63.19  Aligned_cols=83  Identities=11%  Similarity=0.094  Sum_probs=59.6

Q ss_pred             cccccCCceEEeeCCeEEEEcCC---CCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHH
Q psy4640          17 RKSVGSDLDSIGSRNGLAVTDRF---EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW   93 (109)
Q Consensus        17 ~~~~~~~~~~vL~~~~L~yyk~~---~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~W   93 (109)
                      +|..-.+ +..|=.+.|.|=+-.   ..=+..+.|+|+++.|+...+.  ..-+++|.|.++. ++|.++|+|++|..+|
T Consensus        15 rk~~~~R-~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~--~~~~n~f~I~~~~-kSf~v~A~s~~eK~eW   90 (104)
T cd01218          15 RKKPKQR-QFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDD--GIERNGWIIKTPT-KSFAVYAATETEKREW   90 (104)
T ss_pred             cCCCceE-EEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCc--ccccceEEEecCC-eEEEEEcCCHHHHHHH
Confidence            3333334 355556677774321   1124568999999998766542  2347899998775 8999999999999999


Q ss_pred             HHHHHHhhhh
Q psy4640          94 MNALSLASIL  103 (109)
Q Consensus        94 i~aI~~a~~~  103 (109)
                      |++|+.|+..
T Consensus        91 l~~i~~ai~~  100 (104)
T cd01218          91 MLHINKCVTD  100 (104)
T ss_pred             HHHHHHHHHH
Confidence            9999998754

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0932|consensus

Probab=98.79  E-value=2.5e-09  Score=86.85  Aligned_cols=83  Identities=18%  Similarity=0.223  Sum_probs=61.3

Q ss_pred             ccCCceEEeeCCeEEEEcCCCC-Cc------ccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEE-EK------LLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   92 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d-~~------p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~   92 (109)
                      .|+.|+.||++-.||+-||+-. .+      .+..|.+.-.-.+.+.  |..+|+|+|+|.+.+.|.|.|+|.|.+||+.
T Consensus       531 gWk~fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHALAt~At--dY~KKp~Vf~lrtAdwrv~LFQaps~eEmqs  608 (774)
T KOG0932|consen  531 GWKMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHALATPAT--DYSKKPHVFKLRTADWRVFLFQAPSQEEMQS  608 (774)
T ss_pred             hHHHHHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhhhcCCCc--ccccCCceEEEEeccceeEEEeCCCHHHHHH
Confidence            3444567999999999997632 11      2233444333333333  4568899999999999999999999999999


Q ss_pred             HHHHHHHhhhhc
Q psy4640          93 WMNALSLASILQ  104 (109)
Q Consensus        93 Wi~aI~~a~~~~  104 (109)
                      ||+.|+.++-..
T Consensus       609 Wi~rIN~vAA~f  620 (774)
T KOG0932|consen  609 WIERINLVAAAF  620 (774)
T ss_pred             HHHHHHHHHHhc
Confidence            999999887543

>KOG3640|consensus

Probab=98.68  E-value=2.6e-08  Score=84.41  Aligned_cols=95  Identities=19%  Similarity=0.189  Sum_probs=69.7

Q ss_pred             CccccCCCCCc-ccccCCceEEeeCCeEEEEcCCCC---CcccEEEEcCCeEEeecCC--CCcccceeeEEEee--C---
Q psy4640           7 DFLSSSSPSSR-KSVGSDLDSIGSRNGLAVTDRFEE---EKLLGSILLPSYKISPCSS--DDKVFRKFSFKAEH--A---   75 (109)
Q Consensus         7 ~~~~~~~~~~~-~~~~~~~~~vL~~~~L~yyk~~~d---~~p~G~I~L~~~~V~~~~~--~~~~~k~~~F~i~~--~---   75 (109)
                      +||.=..-.++ +.|++ -||+|.++++.|+|.+.|   +.|.|.|+|..|+-..+.+  .|-+.+++.|.|..  |   
T Consensus       994 GFLtmfed~sgfGaWhR-yWc~L~gg~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~ 1072 (1116)
T KOG3640|consen  994 GFLTMFEDGSGFGAWHR-YWCALHGGEIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLED 1072 (1116)
T ss_pred             eeeeeeeccCCCchhhh-hhHHhcCCeeeeecCcchhcccCcceeeehhhhhccccccchhhhccCCceeEEEeeccccc
Confidence            45544333333 44555 599999999999997665   4699999999997443333  34567889999872  1   


Q ss_pred             -------Cce-EEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          76 -------NMR-TYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        76 -------~~r-~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                             ..| -..|+||+.+|++.|+.+|+.+..
T Consensus      1073 Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1073 DQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred             ccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence                   133 579999999999999999998764

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=98.59  E-value=1.2e-06  Score=57.92  Aligned_cols=84  Identities=11%  Similarity=0.085  Sum_probs=61.0

Q ss_pred             ccccCCceEEeeCCeEEEEcCCCCC---cccEEEEcCC-eEEeecCCC-----CcccceeeEEEee-CCceEEEEEcCCH
Q psy4640          18 KSVGSDLDSIGSRNGLAVTDRFEEE---KLLGSILLPS-YKISPCSSD-----DKVFRKFSFKAEH-ANMRTYYFAADTR   87 (109)
Q Consensus        18 ~~~~~~~~~vL~~~~L~yyk~~~d~---~p~G~I~L~~-~~V~~~~~~-----~~~~k~~~F~i~~-~~~r~y~fsA~s~   87 (109)
                      |..+.+-+.||.+..|++|..+++.   .|...+.|.. +.|..+...     +...-++-|+|.. +..++.+|-|+|+
T Consensus        17 k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~~~~~~~~lllLA~s~   96 (112)
T cd01242          17 KPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQILYANEARDLLLLAPQT   96 (112)
T ss_pred             cCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEEEeCCccceEEEEeCCc
Confidence            3445555789999999999987653   4778888854 445444332     2223367899864 3469999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy4640          88 ESMIQWMNALSLAS  101 (109)
Q Consensus        88 ~e~~~Wi~aI~~a~  101 (109)
                      +|.+.|+.||.+-+
T Consensus        97 ~ek~kWV~~L~~~~  110 (112)
T cd01242          97 DEQNKWVSRLVKKI  110 (112)
T ss_pred             hHHHHHHHHHHHhc
Confidence            99999999998754

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=98.48  E-value=1.2e-06  Score=58.24  Aligned_cols=81  Identities=11%  Similarity=0.163  Sum_probs=62.8

Q ss_pred             cccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCe-EEeecCCC--CcccceeeEEEeeCCceEEEEEcC----------
Q psy4640          19 SVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSY-KISPCSSD--DKVFRKFSFKAEHANMRTYYFAAD----------   85 (109)
Q Consensus        19 ~~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~-~V~~~~~~--~~~~k~~~F~i~~~~~r~y~fsA~----------   85 (109)
                      ..+++.+-+|...+|-+|++++.+++-..|||.+. .|+.+...  ......|||+|.+.. ++||...+          
T Consensus        14 ~~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~-~vY~VG~~~~~~~~~~~~   92 (117)
T cd01239          14 NRRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTT-NVYFVGGEDYHAFSGGPP   92 (117)
T ss_pred             cceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecC-EEEEecccccccCCCccc
Confidence            45567788999999999999999999999999876 45543221  112468999999865 89999664          


Q ss_pred             ----------CHHHHHHHHHHHHHh
Q psy4640          86 ----------TRESMIQWMNALSLA  100 (109)
Q Consensus        86 ----------s~~e~~~Wi~aI~~a  100 (109)
                                ..+..+.|-.||+.|
T Consensus        93 ~~~~~~~sg~g~~~a~~We~aI~qA  117 (117)
T cd01239          93 KKIPPSDSGRGSDNAQSWETAIRQA  117 (117)
T ss_pred             CCCCcccccchhHHHHHHHHHHhcC
Confidence                      345679999999976

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=98.46  E-value=3.7e-07  Score=59.82  Aligned_cols=51  Identities=18%  Similarity=0.204  Sum_probs=40.4

Q ss_pred             EEEEcCCeEEeecCCCCcccceeeEEEeeCC-ceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          46 GSILLPSYKISPCSSDDKVFRKFSFKAEHAN-MRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        46 G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~-~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      -.|.|..|.+...+..   .|+|||.|..+. ..++.|+|+|++|+..||+|+..
T Consensus        52 e~~~l~sc~~r~~~~~---dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~dg  103 (104)
T cd01249          52 ETLTLKSCSRRKTESI---DKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMDG  103 (104)
T ss_pred             eEEeeeeccccccCCc---cceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhcC
Confidence            3566778888776664   578999997654 23899999999999999999853

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=98.39  E-value=4.7e-06  Score=55.33  Aligned_cols=76  Identities=14%  Similarity=0.121  Sum_probs=54.5

Q ss_pred             eEEeeCCeEEEEcCCCC-----------CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHH
Q psy4640          25 DSIGSRNGLAVTDRFEE-----------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW   93 (109)
Q Consensus        25 ~~vL~~~~L~yyk~~~d-----------~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~W   93 (109)
                      +.-|=++.|.|=|....           =+..+.|+|.++.|...++.+  .-++.|.|.+.+.+.|.|+|.|++|.++|
T Consensus        24 ~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~--~~knaF~I~~~~~~s~~l~Akt~eeK~~W  101 (112)
T cd01261          24 HVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSS--EYKNAFEIILKDGNSVIFSAKNAEEKNNW  101 (112)
T ss_pred             EEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCc--ccCceEEEEcCCCCEEEEEECCHHHHHHH
Confidence            34455666666553222           123466999998887654422  34789999875568999999999999999


Q ss_pred             HHHHHHhhh
Q psy4640          94 MNALSLASI  102 (109)
Q Consensus        94 i~aI~~a~~  102 (109)
                      |++|..+..
T Consensus       102 m~~l~~~~~  110 (112)
T cd01261         102 MAALISVQT  110 (112)
T ss_pred             HHHHHHHhc
Confidence            999998753

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG2059|consensus

Probab=98.39  E-value=4.4e-07  Score=75.32  Aligned_cols=80  Identities=18%  Similarity=0.189  Sum_probs=67.4

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      ++.|+-|+...|.|-|++. ..|.+.|||.+.. |+.++++ ..+.+++|+|++++ |+.||+|.+-.|.++|+++|+++
T Consensus       587 KKryf~LT~~~Ls~~Ksp~-~q~~~~Ipl~nI~avEklee~-sF~~knv~qVV~~d-rtly~Q~~n~vEandWldaL~kv  663 (800)
T KOG2059|consen  587 KKRYFRLTTEELSYAKSPG-KQPIYTIPLSNIRAVEKLEEK-SFKMKNVFQVVHTD-RTLYVQAKNCVEANDWLDALRKV  663 (800)
T ss_pred             hheEEEeccceeEEecCCc-cCcccceeHHHHHHHHHhhhh-ccCCCceEEEEecC-cceeEecCCchHHHHHHHHHHHH
Confidence            3456899999999999995 7899999999875 5555443 34668999999987 89999999999999999999998


Q ss_pred             hhhc
Q psy4640         101 SILQ  104 (109)
Q Consensus       101 ~~~~  104 (109)
                      +...
T Consensus       664 s~~N  667 (800)
T KOG2059|consen  664 SCCN  667 (800)
T ss_pred             hccC
Confidence            7544

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=98.33  E-value=1.2e-05  Score=53.98  Aligned_cols=83  Identities=18%  Similarity=0.136  Sum_probs=58.9

Q ss_pred             ccccCCceEEeeCCeEEEEcCCCCC------cccEEEEcC--CeEEeecCCC-----CcccceeeEEEee------CCce
Q psy4640          18 KSVGSDLDSIGSRNGLAVTDRFEEE------KLLGSILLP--SYKISPCSSD-----DKVFRKFSFKAEH------ANMR   78 (109)
Q Consensus        18 ~~~~~~~~~vL~~~~L~yyk~~~d~------~p~G~I~L~--~~~V~~~~~~-----~~~~k~~~F~i~~------~~~r   78 (109)
                      |+.+.+-+.||.+..|++|..++++      .+.-.|.|.  .+.|..+...     +...-++-|+|..      ...+
T Consensus        17 krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If~I~~~~~~~~~~~~   96 (122)
T cd01243          17 KKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIFRVTTSQISASSSKC   96 (122)
T ss_pred             ccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEEEEEEecccCCCCcc
Confidence            3444555789999999999977643      344667783  4667655432     2223367899863      2357


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHh
Q psy4640          79 TYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        79 ~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      +.||-|+|+.|.++|+.||...
T Consensus        97 ~~~~lA~s~~eK~kWV~aL~~l  118 (122)
T cd01243          97 STLMLADTEEEKSKWVGALSEL  118 (122)
T ss_pred             EEEEEeCCchHHHHHHHHHHHH
Confidence            8999999999999999999863

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=98.27  E-value=3.3e-06  Score=56.00  Aligned_cols=91  Identities=13%  Similarity=0.123  Sum_probs=60.9

Q ss_pred             CCCcccccCCceEEeeCCeEEEEcCCCCCccc---EEEEcCCeEEeecCC---CCcccceeeEEEeeCC------ceEEE
Q psy4640          14 PSSRKSVGSDLDSIGSRNGLAVTDRFEEEKLL---GSILLPSYKISPCSS---DDKVFRKFSFKAEHAN------MRTYY   81 (109)
Q Consensus        14 ~~~~~~~~~~~~~vL~~~~L~yyk~~~d~~p~---G~I~L~~~~V~~~~~---~~~~~k~~~F~i~~~~------~r~y~   81 (109)
                      ...+|+-+++.+++|+...|||+-....+++.   ....+++..|=..-.   .-+...+|+|.|.++.      .-.-+
T Consensus         9 K~~gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q~~~s~~ik~   88 (114)
T cd01259           9 KADGKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQSKGSQSIKY   88 (114)
T ss_pred             ccCCCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccccCcccchhhee
Confidence            34566777778999999999999866554443   445555554421111   1112235788885432      23569


Q ss_pred             EEcCCHHHHHHHHHHHHHhhhhc
Q psy4640          82 FAADTRESMIQWMNALSLASILQ  104 (109)
Q Consensus        82 fsA~s~~e~~~Wi~aI~~a~~~~  104 (109)
                      |+|||++.+..||.||+-|-+..
T Consensus        89 lCaeDe~t~~~W~ta~Ri~KyG~  111 (114)
T cd01259          89 LCAEDLPTLDRWLTAIRIAKYGK  111 (114)
T ss_pred             eccCCHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999886543

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1117|consensus

Probab=98.22  E-value=4.9e-06  Score=70.64  Aligned_cols=82  Identities=13%  Similarity=0.109  Sum_probs=66.1

Q ss_pred             cccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecC-CCCc--ccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640          19 SVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCS-SDDK--VFRKFSFKAEHANMRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        19 ~~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~-~~~~--~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~   95 (109)
                      .-++ .||||-++.|+||.++....|.|.|.+....+-.+. +++.  ..-.|.|+|..++.|.|.|-+++.+++..|..
T Consensus       517 e~nr-~wcVlg~g~ls~fen~~S~tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~  595 (1186)
T KOG1117|consen  517 ETNR-KWCVLGGGFLSYFENEKSTTPNGLININEIVCLAVHPPDTYPNTGFIFIFEIYLPGERVFLFGLETADALRKWTE  595 (1186)
T ss_pred             cCCC-ceEEcCcchhhhhhhcCCCCCCceeeccceEEEeecCCCCCCCcCceeEEEEeecccceEEeecccHHHHHHHHH
Confidence            3444 599999999999999999999999999875433222 2221  23467899999999999999999999999999


Q ss_pred             HHHHhh
Q psy4640          96 ALSLAS  101 (109)
Q Consensus        96 aI~~a~  101 (109)
                      +|.++-
T Consensus       596 aiaKhf  601 (1186)
T KOG1117|consen  596 AIAKHF  601 (1186)
T ss_pred             HHHHhc
Confidence            998764

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=98.20  E-value=1.6e-06  Score=56.92  Aligned_cols=83  Identities=16%  Similarity=0.071  Sum_probs=60.9

Q ss_pred             ccccCCceEEeeCCeEE-----EEcCCCCCcccEEEEcCCeEEeecCCCC--------cccceeeEEEeeCCceEEEEEc
Q psy4640          18 KSVGSDLDSIGSRNGLA-----VTDRFEEEKLLGSILLPSYKISPCSSDD--------KVFRKFSFKAEHANMRTYYFAA   84 (109)
Q Consensus        18 ~~~~~~~~~vL~~~~L~-----yyk~~~d~~p~G~I~L~~~~V~~~~~~~--------~~~k~~~F~i~~~~~r~y~fsA   84 (109)
                      |++-++ |++|.+-.=|     -|+.+ ...|...|.|+|++|.-+++..        -...+|-|+.+..+ -+..|++
T Consensus        17 KkWKKR-wFvL~qvsQYtfamcsy~ek-ks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~avkeg-d~~~fa~   93 (117)
T cd01234          17 KKWKKR-FFVLVQVSQYTFAMCSYREK-KAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNAVKEG-DELKFAT   93 (117)
T ss_pred             hhhhee-EEEEEchhHHHHHHHhhhhh-cCCchhheeecceEEeccCCCCCCcccccccccchhhhheeccC-cEEEEec
Confidence            455554 7788765544     34444 5789999999999996654421        11345778887666 5899999


Q ss_pred             CCHHHHHHHHHHHHHhhhh
Q psy4640          85 DTRESMIQWMNALSLASIL  103 (109)
Q Consensus        85 ~s~~e~~~Wi~aI~~a~~~  103 (109)
                      +++.|+.-||.||-+|+-.
T Consensus        94 ~de~~r~lwvqa~yratgq  112 (117)
T cd01234          94 DDENERHLWVQAMYRATGQ  112 (117)
T ss_pred             cchHHHHHHHHHHHHHcCc
Confidence            9999999999999998744

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0521|consensus

Probab=98.17  E-value=1.8e-06  Score=73.07  Aligned_cols=76  Identities=16%  Similarity=0.208  Sum_probs=61.3

Q ss_pred             ceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          24 LDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      .|+-.+++.|-|+..-.+......++|..|.|..+.+.  .-++|||+|..++ ++|.|+|+|+.+.+.||.+|+..+.
T Consensus       294 ~~f~~q~~~l~~~~r~~~~~~~~~~dL~~csvk~~~~~--~drr~CF~iiS~t-ks~~lQAes~~d~~~Wi~~i~nsi~  369 (785)
T KOG0521|consen  294 RWFSIQDGQLGYQHRGADAENVLIEDLRTCSVKPDAEQ--RDRRFCFEIISPT-KSYLLQAESEKDCQDWISALQNSIL  369 (785)
T ss_pred             hhhhhhccccccccccccccccccccchhccccCCccc--ccceeeEEEecCC-cceEEecCchhHHHHHHHHHHHHHH
Confidence            45555688888888776555577888889999877663  2468999999864 8999999999999999999998764

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=98.14  E-value=2.5e-05  Score=51.24  Aligned_cols=70  Identities=21%  Similarity=0.216  Sum_probs=49.7

Q ss_pred             eEEeeCC-eEEEEcCCCCCcccEEEEcCCe-EEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          25 DSIGSRN-GLAVTDRFEEEKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        25 ~~vL~~~-~L~yyk~~~d~~p~G~I~L~~~-~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      +.+|++. .|+|+.... ....|.|+++.. +|+....       -.|.|.+|+ |+|+|.. .+.++..|+++|..+..
T Consensus        31 ~liLTd~PrL~Yvdp~~-~~~KGeI~~~~~l~v~~k~~-------~~F~I~tp~-RtY~l~d-~~~~A~~W~~~I~~~~~  100 (104)
T PF14593_consen   31 QLILTDGPRLFYVDPKK-MVLKGEIPWSKELSVEVKSF-------KTFFIHTPK-RTYYLED-PEGNAQQWVEAIEEVKK  100 (104)
T ss_dssp             EEEEETTTEEEEEETTT-TEEEEEE--STT-EEEECSS-------SEEEEEETT-EEEEEE--TTS-HHHHHHHHHHHHH
T ss_pred             EEEEccCCEEEEEECCC-CeECcEEecCCceEEEEccC-------CEEEEECCC-cEEEEEC-CCCCHHHHHHHHHHHHH
Confidence            4589987 888887664 577899999754 6665432       379998885 9999988 55568889999998765


Q ss_pred             hc
Q psy4640         103 LQ  104 (109)
Q Consensus       103 ~~  104 (109)
                      .+
T Consensus       101 ~~  102 (104)
T PF14593_consen  101 QY  102 (104)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=98.14  E-value=2.5e-05  Score=50.93  Aligned_cols=56  Identities=13%  Similarity=0.150  Sum_probs=47.0

Q ss_pred             cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          43 KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        43 ~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      +....++|++..|.-+++.+  .-+++|+|.+++ +++.++|+|.++..+||+.|..|.
T Consensus        43 ~~~~~~~L~~i~V~ni~D~~--~~kNafki~t~~-~s~i~qaes~~~K~eWl~~le~a~   98 (100)
T cd01226          43 VMESTYSLNSVAVVNVKDRE--NAKKVLKLLIFP-ESRIYQCESARIKTEWFEELEQAK   98 (100)
T ss_pred             EEEEEEehHHeEEEecCCCc--CcCceEEEEeCC-ccEEEEeCCHHHHHHHHHHHHHHh
Confidence            45689999999887665532  347899998876 799999999999999999999985

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15406 PH_6: Pleckstrin homology domain

Probab=98.10  E-value=1.3e-05  Score=52.80  Aligned_cols=61  Identities=20%  Similarity=0.192  Sum_probs=44.0

Q ss_pred             CeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          31 NGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        31 ~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      +.|+|-|.+....|.|+|+|.+.+ |+.  +   ...+|.|++  .+ ....|.|.|..|++.||.+|..
T Consensus        50 GLLF~~K~~dka~P~GiinLadase~~~--~---g~~kF~f~~--~G-~khtF~A~s~aERD~Wv~~lk~  111 (112)
T PF15406_consen   50 GLLFFSKAEDKASPSGIINLADASEPEK--D---GSNKFHFKI--KG-HKHTFEAASAAERDNWVAQLKA  111 (112)
T ss_pred             eEEEEeccccccCCcceEehhhcccccc--C---CCceEEEEe--CC-ceeeeecCCHHHhccHHHHhhc
Confidence            456666644456899999997753 222  2   134677776  34 5789999999999999999863

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=98.00  E-value=4.6e-05  Score=50.30  Aligned_cols=81  Identities=14%  Similarity=0.043  Sum_probs=59.9

Q ss_pred             cccCCceEEeeCCeEEEEcCCCC-----CcccEEEEcC--CeEEeecCCCC--cccceeeEEEeeCCc-eEEEEEcCCHH
Q psy4640          19 SVGSDLDSIGSRNGLAVTDRFEE-----EKLLGSILLP--SYKISPCSSDD--KVFRKFSFKAEHANM-RTYYFAADTRE   88 (109)
Q Consensus        19 ~~~~~~~~vL~~~~L~yyk~~~d-----~~p~G~I~L~--~~~V~~~~~~~--~~~k~~~F~i~~~~~-r~y~fsA~s~~   88 (109)
                      +.+++-+.+|++..|+.|+...-     .+|.-..+|-  -+++....+..  ..++++||.+.+... .+++|+.|+..
T Consensus        17 ~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg~~vesh~fsVEt~~   96 (108)
T cd01258          17 QRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTGTQVENHYLRVETHR   96 (108)
T ss_pred             cccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcCCceeeEEEEecCHH
Confidence            45556678999999999997754     3566777775  34432222211  125679999988777 89999999999


Q ss_pred             HHHHHHHHHHH
Q psy4640          89 SMIQWMNALSL   99 (109)
Q Consensus        89 e~~~Wi~aI~~   99 (109)
                      |+..|.+||.+
T Consensus        97 dL~~W~raiv~  107 (108)
T cd01258          97 DLASWERALVR  107 (108)
T ss_pred             HHHHHHHHHhc
Confidence            99999999975

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1090|consensus

Probab=97.97  E-value=3.6e-06  Score=72.53  Aligned_cols=81  Identities=22%  Similarity=0.252  Sum_probs=62.7

Q ss_pred             cccCCceEEee--CCeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640          19 SVGSDLDSIGS--RNGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        19 ~~~~~~~~vL~--~~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~   95 (109)
                      +.|+.-|+||.  .+.|+||.+..|++|.|.|.|...+ |....++. ...+--|.+.+.+ |+|-|.|.+..+.++|++
T Consensus      1648 K~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~-vdekgffdlktt~-rvynf~a~nin~AqqWve 1725 (1732)
T KOG1090|consen 1648 KLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKT-VDEKGFFDLKTTN-RVYNFCAQNINLAQQWVE 1725 (1732)
T ss_pred             cccccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccc-cCccceeeeehhh-HHHHHHhccchHHHHHHH
Confidence            55666688985  4889999999999999999997764 44433322 1223458887654 999999999999999999


Q ss_pred             HHHHhh
Q psy4640          96 ALSLAS  101 (109)
Q Consensus        96 aI~~a~  101 (109)
                      .|..+.
T Consensus      1726 ~iqscl 1731 (1732)
T KOG1090|consen 1726 CIQSCL 1731 (1732)
T ss_pred             HHHHhh
Confidence            998754

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=97.92  E-value=0.00025  Score=46.92  Aligned_cols=75  Identities=16%  Similarity=0.124  Sum_probs=54.8

Q ss_pred             EEeeCCeEEEEcCCCC----CcccEEEEcCCeEEeecCCCCc----ccceeeEEEeeCC-ceEEEEEcCCHHHHHHHHHH
Q psy4640          26 SIGSRNGLAVTDRFEE----EKLLGSILLPSYKISPCSSDDK----VFRKFSFKAEHAN-MRTYYFAADTRESMIQWMNA   96 (109)
Q Consensus        26 ~vL~~~~L~yyk~~~d----~~p~G~I~L~~~~V~~~~~~~~----~~k~~~F~i~~~~-~r~y~fsA~s~~e~~~Wi~a   96 (109)
                      .-|=|+.|.|=|...-    =.-.|.|.|..++|...++...    ..-++.|+|.+.. ...|.|+|.|.++.++||+|
T Consensus        23 ~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a  102 (109)
T cd01224          23 LFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSA  102 (109)
T ss_pred             EEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHH
Confidence            4566777777773321    2356999999999987765321    1236899997643 57899999999999999999


Q ss_pred             HHHh
Q psy4640          97 LSLA  100 (109)
Q Consensus        97 I~~a  100 (109)
                      |...
T Consensus       103 ~~~e  106 (109)
T cd01224         103 FALE  106 (109)
T ss_pred             HHHh
Confidence            9763

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=97.83  E-value=0.00016  Score=47.85  Aligned_cols=75  Identities=11%  Similarity=0.096  Sum_probs=57.3

Q ss_pred             eEEeeCCeEEEEcC-CC--CCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          25 DSIGSRNGLAVTDR-FE--EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        25 ~~vL~~~~L~yyk~-~~--d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      +.+|=.++|+.... +.  .=.-.|-+||.+.+|...++.+  +.++.|+|..+---+..+.|.|.+|+++||..|+.-+
T Consensus        32 yLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e--~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~~  109 (111)
T cd01225          32 YLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTE--ALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNANN  109 (111)
T ss_pred             EEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhcc--CccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhhc
Confidence            45777777777764 32  2346799999999988654432  5579999987766678999999999999999998743

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=97.80  E-value=0.00013  Score=46.50  Aligned_cols=67  Identities=19%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             eEEeeC-CeEEEEcCCCCCcccEEEEcCC-e-EEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          25 DSIGSR-NGLAVTDRFEEEKLLGSILLPS-Y-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        25 ~~vL~~-~~L~yyk~~~d~~p~G~I~L~~-~-~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      .-+|++ ..|+|+. +.....+|.||+.. . +|+...       ...|.|.+|+ |+|+|. |.+.....|+++|..+.
T Consensus        19 ~LiLTd~PrL~yvd-p~~~~~KgeIp~s~~~l~v~~~~-------~~~F~I~Tp~-rty~le-D~~~~a~~W~~~I~~~~   88 (89)
T cd01262          19 QLILTNGPRLIYVD-PVKKVVKGEIPWSDVELRVEVKN-------SSHFFVHTPN-KVYSFE-DPKGRASQWKKAIEDLQ   88 (89)
T ss_pred             eEEEecCceEEEEc-CCcCeEEeEecccccceEEEEec-------CccEEEECCC-ceEEEE-CCCCCHHHHHHHHHHHh
Confidence            457777 4555554 44678999999976 3 344332       3479998776 999995 55689999999998764

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=97.79  E-value=9.5e-05  Score=48.25  Aligned_cols=70  Identities=11%  Similarity=0.144  Sum_probs=48.5

Q ss_pred             CCeEEEEcC--CCCCcccEEEEcCCe-EEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          30 RNGLAVTDR--FEEEKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        30 ~~~L~yyk~--~~d~~p~G~I~L~~~-~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      +..|.+|--  ++..+|+-.|+.... .|......+-..+.+.|.|.-.+.-.|.|.|.|.++|+.|+..|+.
T Consensus        34 g~~le~~~~~pPKssrpk~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~  106 (107)
T cd01231          34 GYMLEFYLPLPPKSSKPKLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY  106 (107)
T ss_pred             CceEEEEccCCCCCCCCccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence            455555554  777888877776433 2333333222345678888766667899999999999999999974

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>KOG4424|consensus

Probab=97.78  E-value=2.9e-05  Score=63.55  Aligned_cols=86  Identities=16%  Similarity=0.064  Sum_probs=65.9

Q ss_pred             ccccCCceEEe---eCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHH
Q psy4640          18 KSVGSDLDSIG---SRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        18 ~~~~~~~~~vL---~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi   94 (109)
                      .+.|...|++.   ...++|.|..++|......|||.||.+...+........++|++.. .++.|+|+|+|++-+++|+
T Consensus       510 ~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~~~iPl~~~~v~~pe~~~~~D~~~~~k~~~-s~~~~~~~a~~~q~qq~wl  588 (623)
T KOG4424|consen  510 GKTGILAWSVVPKSDPLVDYSYGSPQDVRAQATIPLPGVEVTIPEFVRREDLFHVFKLVQ-SHLSWHLAADDEQLQQRWL  588 (623)
T ss_pred             CccceeeeeeccCCCCccccccCCccccccccccccCccccCCCcccccchhcchhhhhh-hcceeeeccCCHHHHHHHH
Confidence            34555556644   4578999999999999999999999876443322223457788864 4579999999999999999


Q ss_pred             HHHHHhhhhc
Q psy4640          95 NALSLASILQ  104 (109)
Q Consensus        95 ~aI~~a~~~~  104 (109)
                      +.|..|....
T Consensus       589 ~~l~~A~~~d  598 (623)
T KOG4424|consen  589 EVLLLAVSGD  598 (623)
T ss_pred             HHHHhhhccc
Confidence            9999988654

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=97.64  E-value=0.00017  Score=57.40  Aligned_cols=37  Identities=19%  Similarity=0.092  Sum_probs=32.2

Q ss_pred             cceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          65 FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        65 ~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      +++++|.|.+...+.++|.|+|++|+++||.+|+.|.
T Consensus       440 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~  476 (478)
T PTZ00267        440 KHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRAC  476 (478)
T ss_pred             CCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHh
Confidence            5689999976566788999999999999999999875

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=97.61  E-value=0.00027  Score=47.23  Aligned_cols=62  Identities=24%  Similarity=0.274  Sum_probs=45.5

Q ss_pred             ccEEEEcCCeEEeecCCCCcc----cceeeEEEeeCC-ceEEEEEcCCHHHHHHHHHHHHHhhhhcc
Q psy4640          44 LLGSILLPSYKISPCSSDDKV----FRKFSFKAEHAN-MRTYYFAADTRESMIQWMNALSLASILQN  105 (109)
Q Consensus        44 p~G~I~L~~~~V~~~~~~~~~----~k~~~F~i~~~~-~r~y~fsA~s~~e~~~Wi~aI~~a~~~~~  105 (109)
                      -.-.+.|..+.|+.....|..    +-.|+|.|.+.+ .-.|.|.|.|+++...||+||..|...-.
T Consensus        49 ~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sni~  115 (116)
T cd01223          49 YKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSNIR  115 (116)
T ss_pred             hHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhcCC
Confidence            345677888887654322221    346889998654 36799999999999999999999876544

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=97.59  E-value=0.0015  Score=42.22  Aligned_cols=70  Identities=13%  Similarity=0.151  Sum_probs=47.0

Q ss_pred             eCCeEEEEcCCCCC-cccEEEEcCCeEEeecCCCCcccceeeEEEeeCC--ceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          29 SRNGLAVTDRFEEE-KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN--MRTYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        29 ~~~~L~yyk~~~d~-~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~--~r~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      =+..|.|=|...++ .-+..|.+.+..|....++    -+++|.|.+.+  .+.|.|+|.|.++.+.||++|+.++.
T Consensus        24 Fe~~ll~~K~~~~~y~~K~~i~~~~l~i~e~~~~----d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i~   96 (97)
T cd01222          24 FQTMLLIAKPRGDKYQFKAYIPCKNLMLVEHLPG----EPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAML   96 (97)
T ss_pred             ecccEEEEEecCCeeEEEEEEEecceEEecCCCC----CCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHhh
Confidence            34444443432221 3456778887776553332    26899996431  26999999999999999999998763

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=97.49  E-value=0.0015  Score=44.23  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=27.7

Q ss_pred             ceeeEEEe-----eCCceEEEEEcCCHHHHHHHHHHHH
Q psy4640          66 RKFSFKAE-----HANMRTYYFAADTRESMIQWMNALS   98 (109)
Q Consensus        66 k~~~F~i~-----~~~~r~y~fsA~s~~e~~~Wi~aI~   98 (109)
                      .++.|.|.     ....+.+.|+|+|+.|+.+||+||.
T Consensus        82 ~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~  119 (125)
T cd01221          82 RPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA  119 (125)
T ss_pred             CCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence            46889985     2346789999999999999999985

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PLN02866 phospholipase D

Probab=97.48  E-value=0.00097  Score=58.15  Aligned_cols=81  Identities=17%  Similarity=0.205  Sum_probs=61.4

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcC-Ce--------EEeecCC-CCcccceeeEEEeeCCceEEEEEcCCHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLP-SY--------KISPCSS-DDKVFRKFSFKAEHANMRTYYFAADTRESM   90 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~-~~--------~V~~~~~-~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~   90 (109)
                      +++-|.||++.+|.|.+++.+.++.-+|... ..        .+..+.. .+.....|.|+|... .|+..|.|.|...+
T Consensus       218 w~k~w~v~k~~~l~~~~~p~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~-~r~l~l~~~s~~~~  296 (1068)
T PLN02866        218 WQKVWAVLKPGFLALLEDPFDAKPLDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCG-NRSIRLRTKSSAKV  296 (1068)
T ss_pred             hheeEEEEeccEEEEEecCCCCceeEEEEEecccccccCCCcceeecccccccCCCcceEEEecC-ceEEEEEECCHHHH
Confidence            4446889999999999999998988888775 11        2333222 111233689999765 59999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy4640          91 IQWMNALSLASI  102 (109)
Q Consensus        91 ~~Wi~aI~~a~~  102 (109)
                      .+|+++|+.+..
T Consensus       297 ~~w~~ai~~~~~  308 (1068)
T PLN02866        297 KDWVAAINDAGL  308 (1068)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999873

>KOG3751|consensus

Probab=97.44  E-value=0.00031  Score=57.21  Aligned_cols=89  Identities=13%  Similarity=0.076  Sum_probs=57.4

Q ss_pred             CCcccccCCceEEeeCCeEEEEcCCCCCcccE---EEEcCCeEE--eecCCC-CcccceeeEEEe--e---CCceEEEEE
Q psy4640          15 SSRKSVGSDLDSIGSRNGLAVTDRFEEEKLLG---SILLPSYKI--SPCSSD-DKVFRKFSFKAE--H---ANMRTYYFA   83 (109)
Q Consensus        15 ~~~~~~~~~~~~vL~~~~L~yyk~~~d~~p~G---~I~L~~~~V--~~~~~~-~~~~k~~~F~i~--~---~~~r~y~fs   83 (109)
                      ..+|+.|+++++||+...|||+-..+.+.|.-   .-.|.+-.|  ...... -+.-..|+|.|.  .   ...-.=+|+
T Consensus       327 ~dgkKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K~~~~~~~~r~lk~lC  406 (622)
T KOG3751|consen  327 EDGKKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIKPNKLRNKRRFLKMLC  406 (622)
T ss_pred             ccccccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEeeeccccCcccceeeee
Confidence            55688889999999999999998776666543   223333332  222221 011123555543  1   222234899


Q ss_pred             cCCHHHHHHHHHHHHHhhhh
Q psy4640          84 ADTRESMIQWMNALSLASIL  103 (109)
Q Consensus        84 A~s~~e~~~Wi~aI~~a~~~  103 (109)
                      ||++..+..|+.||+.+-+.
T Consensus       407 AEDe~t~~~WltAiRl~KyG  426 (622)
T KOG3751|consen  407 AEDEQTRTCWLTAIRLLKYG  426 (622)
T ss_pred             cccchhHHHHHHHHHHHHHH
Confidence            99999999999999987653

>KOG0690|consensus

Probab=97.39  E-value=0.00058  Score=53.69  Aligned_cols=83  Identities=13%  Similarity=0.112  Sum_probs=53.3

Q ss_pred             cccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCC--CCcccceeeEEEeeCC---ceEEEEEcCCHHHHHHH
Q psy4640          19 SVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSS--DDKVFRKFSFKAEHAN---MRTYYFAADTRESMIQW   93 (109)
Q Consensus        19 ~~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~--~~~~~k~~~F~i~~~~---~r~y~fsA~s~~e~~~W   93 (109)
                      .|+-+.+.+..++.|.=|+++......-.-+|+++.|..+..  -+ ..+++.|-|..-+   --.-.|.++|.+++++|
T Consensus        30 nWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~e-rPrPntFiiRcLQWTTVIERTF~ves~~eRq~W  108 (516)
T KOG0690|consen   30 NWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKTE-RPRPNTFIIRCLQWTTVIERTFYVESAEERQEW  108 (516)
T ss_pred             cccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhcc-CCCCceEEEEeeeeeeeeeeeeecCCHHHHHHH
Confidence            333333345578899989876544333446777777654432  12 2467888885422   11236779999999999


Q ss_pred             HHHHHHhhh
Q psy4640          94 MNALSLASI  102 (109)
Q Consensus        94 i~aI~~a~~  102 (109)
                      +.||+.++.
T Consensus       109 ~~AIq~vsn  117 (516)
T KOG0690|consen  109 IEAIQAVSN  117 (516)
T ss_pred             HHHHHHHhh
Confidence            999998763

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=97.33  E-value=0.00098  Score=56.09  Aligned_cols=79  Identities=8%  Similarity=0.062  Sum_probs=58.4

Q ss_pred             eEEeeCCeEEEEcCC--CCCcccEEEEcC-CeEEeecCCCC-cccceeeEEEee--CCceEEEEEcCCHHHHHHHHHHHH
Q psy4640          25 DSIGSRNGLAVTDRF--EEEKLLGSILLP-SYKISPCSSDD-KVFRKFSFKAEH--ANMRTYYFAADTRESMIQWMNALS   98 (109)
Q Consensus        25 ~~vL~~~~L~yyk~~--~d~~p~G~I~L~-~~~V~~~~~~~-~~~k~~~F~i~~--~~~r~y~fsA~s~~e~~~Wi~aI~   98 (109)
                      ++||.++.|-|||.+  ....|+.+..|. +|.|+...-+. ..+--|+|.|..  ...+...|.|-|.+|..+||+||.
T Consensus        27 y~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~  106 (719)
T PLN00188         27 YFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIE  106 (719)
T ss_pred             EEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEecCCCccccEEEecCCHHHHHHHHHHHH
Confidence            479999999999963  335677888885 45777544321 112247888853  334678999999999999999999


Q ss_pred             Hhhhh
Q psy4640          99 LASIL  103 (109)
Q Consensus        99 ~a~~~  103 (109)
                      .|+..
T Consensus       107 ~a~~q  111 (719)
T PLN00188        107 SVIDQ  111 (719)
T ss_pred             HHHhh
Confidence            99874

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=97.25  E-value=0.0051  Score=41.11  Aligned_cols=81  Identities=17%  Similarity=0.092  Sum_probs=50.0

Q ss_pred             cccCCceEEeeC--CeEEEEcCCC-CCc----ccEEEEcCCeE-EeecCCCCccc----ceeeEEEeeCCceEEEEEcCC
Q psy4640          19 SVGSDLDSIGSR--NGLAVTDRFE-EEK----LLGSILLPSYK-ISPCSSDDKVF----RKFSFKAEHANMRTYYFAADT   86 (109)
Q Consensus        19 ~~~~~~~~vL~~--~~L~yyk~~~-d~~----p~G~I~L~~~~-V~~~~~~~~~~----k~~~F~i~~~~~r~y~fsA~s   86 (109)
                      +.+.+ ++.|..  .+|+|...+. .+.    -.+.|.|.+.. |..-.+.....    -.++|.|.+++ |+.-|.|+|
T Consensus        29 ~~h~R-~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i~t~~-R~L~l~a~s  106 (123)
T PF12814_consen   29 KPHRR-YFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIIIVTPD-RSLDLTAPS  106 (123)
T ss_pred             CcEEE-EEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEEEcCC-eEEEEEeCC
Confidence            34443 455655  6677777432 122    23568887664 32211111111    24677777665 999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy4640          87 RESMIQWMNALSLAS  101 (109)
Q Consensus        87 ~~e~~~Wi~aI~~a~  101 (109)
                      .++.+-|+++|+.-+
T Consensus       107 ~~~~~~W~~aL~~L~  121 (123)
T PF12814_consen  107 RERHEIWFNALRYLL  121 (123)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998644

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=97.22  E-value=0.00041  Score=44.78  Aligned_cols=46  Identities=15%  Similarity=0.252  Sum_probs=34.9

Q ss_pred             cEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          45 LGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        45 ~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      .=.|||++..+...          .|++.....++|.|.|.|..|..+||++|..-
T Consensus        48 ~w~IPL~dl~~~~~----------~~~~~~~~~KSf~~~asS~~Er~eW~~hI~~~   93 (96)
T cd01228          48 KWYIPLADLSFPSE----------PFRIHNKNGKSYTFLLSSDYERSEWRESIQKL   93 (96)
T ss_pred             eEEEEhHHheecch----------hhhccccCCceEEEEecCHHHHHHHHHHHHHH
Confidence            34788887665533          15554444689999999999999999999763

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=96.94  E-value=0.0059  Score=40.56  Aligned_cols=52  Identities=10%  Similarity=0.194  Sum_probs=37.9

Q ss_pred             EEEEcCCeEEeecCCCCcccceeeEEEe--eCC--ceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          46 GSILLPSYKISPCSSDDKVFRKFSFKAE--HAN--MRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        46 G~I~L~~~~V~~~~~~~~~~k~~~F~i~--~~~--~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      ..|+|++..++...+.|    +..|.|.  .+.  ..+|.++|.|.++.+.|+..|+...
T Consensus        57 ~~ikls~l~l~e~v~gd----~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il  112 (114)
T cd01232          57 SKLQVSKMGLTEHVEGD----PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREIL  112 (114)
T ss_pred             cceeeeeeEeEEccCCC----CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            67888877766543322    3456664  332  3699999999999999999999864

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=96.84  E-value=0.0019  Score=51.90  Aligned_cols=38  Identities=16%  Similarity=0.176  Sum_probs=34.6

Q ss_pred             cceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          65 FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        65 ~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      +.+|+|.+...++|.+.|.|.+++|++.||.+|+.+.-
T Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (496)
T PTZ00283        453 NAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG  490 (496)
T ss_pred             CCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence            46899999887789999999999999999999999864

>KOG1117|consensus

Probab=96.46  E-value=0.008  Score=51.81  Aligned_cols=77  Identities=17%  Similarity=0.168  Sum_probs=58.9

Q ss_pred             EEeeCCeEEEEcCCCCCcccEEEEcCCeEEee-cCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640          26 SIGSRNGLAVTDRFEEEKLLGSILLPSYKISP-CSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASIL  103 (109)
Q Consensus        26 ~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~-~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~  103 (109)
                      .||.+.||+.||+.+..+.....+|.+.++=. +...-+....+.|.+...++ .+|++|++..++-+|+..|=.|-..
T Consensus      1056 filng~~l~lyke~KssKhek~wpl~s~k~Y~GvkkklKpPt~wg~T~i~ekh-h~~l~cd~s~~~~ewfts~fkaqhd 1133 (1186)
T KOG1117|consen 1056 FILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGVKKKLKPPTSWGFTAISEKH-HWYLCCDSSSEQTEWFTSIFKAQHD 1133 (1186)
T ss_pred             EEecCcEEEEeehhhccccccccccccceEEeccccccCCCCccceeeeeecc-eEEEecCCccccchhhhhhhhhhcc
Confidence            69999999999999888888899998876533 22211122346788887764 7999999999999999988776543

>KOG3727|consensus

Probab=96.37  E-value=0.0013  Score=54.12  Aligned_cols=76  Identities=17%  Similarity=0.159  Sum_probs=55.0

Q ss_pred             EeeCCeEEEEcCCCCCcccEEEEcCCeEEeec-CCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640          27 IGSRNGLAVTDRFEEEKLLGSILLPSYKISPC-SSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQ  104 (109)
Q Consensus        27 vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~-~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~  104 (109)
                      +..+..+.||++.  ..|.+.|.|.||+|+++ +........++.+..-++.-.+|+.|++++.--+||+|-+.|+...
T Consensus       385 l~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WMAaCrLASKGk  461 (664)
T KOG3727|consen  385 LHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWMAACRLASKGK  461 (664)
T ss_pred             HHHHHHhhHhhhc--CCCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHHHHhhHhhcCC
Confidence            4444555566655  68899999999998654 3322223344555555677889999999999999999999998754

>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A

Probab=96.18  E-value=0.011  Score=40.28  Aligned_cols=36  Identities=14%  Similarity=0.335  Sum_probs=26.5

Q ss_pred             cceeeEEEeeCCc--eEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          65 FRKFSFKAEHANM--RTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        65 ~k~~~F~i~~~~~--r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      +..|.|++.+-+.  ..|.|.|+|..++++|+++|..+
T Consensus        97 ~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q  134 (135)
T PF15405_consen   97 KSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ  134 (135)
T ss_dssp             SSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred             CCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence            4568888877543  46799999999999999999874

>KOG0248|consensus

Probab=96.13  E-value=0.0047  Score=52.06  Aligned_cols=75  Identities=12%  Similarity=0.196  Sum_probs=59.3

Q ss_pred             ceEEeeCCeEEEEcCCC--CCcccEEEEcC-CeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          24 LDSIGSRNGLAVTDRFE--EEKLLGSILLP-SYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~--d~~p~G~I~L~-~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      -|.|++.....||+.+.  +.+|.+.|.++ +|.+....      -.+.|.++... .+|+|.++++--..+|++.|..+
T Consensus       268 r~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~~------~s~~fqli~~t-~~~~~~~~s~~lt~dw~~iL~~~  340 (936)
T KOG0248|consen  268 RYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQG------AAYAFQLITST-DKMNFMTESERTTHDWVTILSAA  340 (936)
T ss_pred             HheeeccceEEEEEcCCCccccccCcccccccceeeccc------hhHHhhhhhhc-eeEEEeccChhhhhhhHHHHHHH
Confidence            36899999999999664  57899999996 45544332      25789887554 78999999999999999999998


Q ss_pred             hhhcc
Q psy4640         101 SILQN  105 (109)
Q Consensus       101 ~~~~~  105 (109)
                      +..+.
T Consensus       341 iKv~~  345 (936)
T KOG0248|consen  341 IKATT  345 (936)
T ss_pred             HHHHh
Confidence            87763

>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain

Probab=96.03  E-value=0.12  Score=35.98  Aligned_cols=94  Identities=15%  Similarity=0.166  Sum_probs=64.9

Q ss_pred             cccCCCCCcccccCCce---EEeeCCeEEEEcCCCC--CcccE-----------------EEEcCCeEEeecCCCCcccc
Q psy4640           9 LSSSSPSSRKSVGSDLD---SIGSRNGLAVTDRFEE--EKLLG-----------------SILLPSYKISPCSSDDKVFR   66 (109)
Q Consensus         9 ~~~~~~~~~~~~~~~~~---~vL~~~~L~yyk~~~d--~~p~G-----------------~I~L~~~~V~~~~~~~~~~k   66 (109)
                      .|-+.+-+.++.-+...   +|++.-.++.||+...  ++.-|                 .||+....|......+ ...
T Consensus        34 ~WLNp~~slgk~kKe~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~ad-~e~  112 (160)
T cd01255          34 EWLNPSDSLGKIKKELELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSAAD-MES  112 (160)
T ss_pred             eeecCChhhccccCCceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCCcC-ccc
Confidence            34455544444445555   4899999999996542  33323                 6777777776544433 345


Q ss_pred             eeeEEEeeC-------CceEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640          67 KFSFKAEHA-------NMRTYYFAADTRESMIQWMNALSLASIL  103 (109)
Q Consensus        67 ~~~F~i~~~-------~~r~y~fsA~s~~e~~~Wi~aI~~a~~~  103 (109)
                      .+.++|+|.       ..++|.|++.+.|-.+..|+.|+.....
T Consensus       113 ~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre  156 (160)
T cd01255         113 NFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRE  156 (160)
T ss_pred             ceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHH
Confidence            688999762       2479999999999999999999986643

TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.

>KOG1738|consensus

Probab=95.96  E-value=0.00092  Score=55.34  Aligned_cols=39  Identities=15%  Similarity=0.095  Sum_probs=35.6

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCC
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSS   60 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~   60 (109)
                      ++.|+||+++.||.|.+++++.+.++|.|..++|..+.+
T Consensus       582 ~k~~~~l~~~~l~~y~n~~~~~~e~~i~l~~~~i~~a~e  620 (638)
T KOG1738|consen  582 RKIWMVLNDDPLLNYRNHRVRAAESVIKLPLFTISVAEE  620 (638)
T ss_pred             hhheeeecCchhhhhhhhhhhchhheeeccchhhhhHHH
Confidence            346899999999999999999999999999999988766

>KOG3549|consensus

Probab=95.74  E-value=0.0037  Score=49.16  Aligned_cols=80  Identities=14%  Similarity=0.190  Sum_probs=55.9

Q ss_pred             EeeCCeEEEEcCCCCC-----cccEEEEcC--CeEEee-cCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHH
Q psy4640          27 IGSRNGLAVTDRFEEE-----KLLGSILLP--SYKISP-CSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS   98 (109)
Q Consensus        27 vL~~~~L~yyk~~~d~-----~p~G~I~L~--~~~V~~-~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~   98 (109)
                      .|++.++|.|..+.-.     ++.-...+=  -|+|.. .+-.|  .+++||.|....+...||+.+...|+.+|=++.+
T Consensus       306 aLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kdsd~~D--~R~~CF~~qs~~ge~~yfsVEl~seLa~wE~sfq  383 (505)
T KOG3549|consen  306 ALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKDSDTVD--SRQHCFLLQSSGGEPRYFSVELRSELARWENSFQ  383 (505)
T ss_pred             EecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhccccccc--cccceEEEEcCCCCceEEEEehhhHHHHHHHHHh
Confidence            7899999999976422     222222221  123221 11122  6789999998888999999999999999999999


Q ss_pred             HhhhhccCCC
Q psy4640          99 LASILQNSST  108 (109)
Q Consensus        99 ~a~~~~~~~~  108 (109)
                      .|+.-...++
T Consensus       384 ~Atf~eV~r~  393 (505)
T KOG3549|consen  384 AATFTEVIRL  393 (505)
T ss_pred             hHHhHHHhhh
Confidence            9986654443

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=95.73  E-value=0.044  Score=36.37  Aligned_cols=82  Identities=15%  Similarity=0.101  Sum_probs=55.7

Q ss_pred             ccccCCce-------EEeeCCeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHH
Q psy4640          18 KSVGSDLD-------SIGSRNGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES   89 (109)
Q Consensus        18 ~~~~~~~~-------~vL~~~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e   89 (109)
                      +++|.+|.       .-|=.|.|.+|....+++ ...|.++..+ |+.  +....+...|+.|.-.+.+.+++.++++-+
T Consensus        10 ~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~-~eLi~M~~i~~V~~--e~~~iK~~~CI~ik~k~~~k~vlt~~d~i~   86 (116)
T cd01240          10 KKLGGPFLSQWQTRYFKLYPNRLELYGESEANK-PELITMDQIEDVSV--EFQQIKEENCILLKIRDEKKIVLTNSDEIE   86 (116)
T ss_pred             hhhCCHHHHHHHHHHheeCcceeeecccccccC-CcEEEeehhhhcch--hheeeccCceEEEEEcCCceEEEecCCcHH
Confidence            45666554       478899999986655433 3455555432 221  111124467888876667889999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy4640          90 MIQWMNALSLASI  102 (109)
Q Consensus        90 ~~~Wi~aI~~a~~  102 (109)
                      ..+|...|+.|-.
T Consensus        87 l~qW~~elr~a~r   99 (116)
T cd01240          87 LKQWKKELRDAHR   99 (116)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998754

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain

Probab=95.64  E-value=0.12  Score=33.82  Aligned_cols=33  Identities=15%  Similarity=0.316  Sum_probs=27.9

Q ss_pred             eeeEEEeeCC---ceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          67 KFSFKAEHAN---MRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        67 ~~~F~i~~~~---~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      ..+|.|....   -++..|.|+|.++++.|++.|+.
T Consensus        79 ~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~  114 (115)
T cd01248          79 ERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK  114 (115)
T ss_pred             ccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence            4689997643   47899999999999999999974

Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1739|consensus

Probab=95.60  E-value=0.018  Score=46.98  Aligned_cols=76  Identities=21%  Similarity=0.271  Sum_probs=56.6

Q ss_pred             cCCceEEeeCCeEEEEcCCCCC--cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEE--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS   98 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~--~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~   98 (109)
                      +.+=+.+|+.+.|.||+++.++  .-.|.|.|....|..-+. |    ...|.|.... -.+|+.|.+.+..+.|+++|.
T Consensus        40 wqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ahEf-D----e~rfdIsvn~-nv~~lra~~~~hr~~w~d~L~  113 (611)
T KOG1739|consen   40 WQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAHEF-D----ECRFDISVND-NVWYLRAQDPDHRQQWIDALE  113 (611)
T ss_pred             ccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccccc-h----hheeeeEecc-ceeeehhcCcHHHHHHHHHHH
Confidence            3344789999999999987543  467999998766543322 2    3457776554 589999999999999999998


Q ss_pred             Hhhh
Q psy4640          99 LASI  102 (109)
Q Consensus        99 ~a~~  102 (109)
                      ....
T Consensus       114 wmk~  117 (611)
T KOG1739|consen  114 WMKT  117 (611)
T ss_pred             HHhh
Confidence            8654

>KOG1264|consensus

Probab=95.51  E-value=0.027  Score=48.61  Aligned_cols=57  Identities=23%  Similarity=0.412  Sum_probs=41.8

Q ss_pred             EEEEcCCeEEeecCCCCcccceeeEEEee--CCceEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640          46 GSILLPSYKISPCSSDDKVFRKFSFKAEH--ANMRTYYFAADTRESMIQWMNALSLASIL  103 (109)
Q Consensus        46 G~I~L~~~~V~~~~~~~~~~k~~~F~i~~--~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~  103 (109)
                      |+..++-|.|...+.+ +-.+.++|.|..  -+.-.|.|+|++.||+.+|+++|+.++..
T Consensus       854 gi~d~~~~nvv~~~q~-~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~  912 (1267)
T KOG1264|consen  854 GILDLNTYNVVKAPQG-KNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWK  912 (1267)
T ss_pred             ccccccccceeecccc-cCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHH
Confidence            4556666776555442 224578999852  34568999999999999999999998754

>KOG4236|consensus

Probab=95.11  E-value=0.044  Score=45.80  Aligned_cols=81  Identities=14%  Similarity=0.141  Sum_probs=59.4

Q ss_pred             eEEeeCCeEEEEcCCCCCcccEEEEcCCe-EEeecCCC---CcccceeeEEEeeCCceEEEEEcCC------------HH
Q psy4640          25 DSIGSRNGLAVTDRFEEEKLLGSILLPSY-KISPCSSD---DKVFRKFSFKAEHANMRTYYFAADT------------RE   88 (109)
Q Consensus        25 ~~vL~~~~L~yyk~~~d~~p~G~I~L~~~-~V~~~~~~---~~~~k~~~F~i~~~~~r~y~fsA~s------------~~   88 (109)
                      +=.|...|+-.|.++...+.-..|||... .|+.....   -....+|||+|.+..  +.||..++            .+
T Consensus       433 YWrldsk~itlfqn~s~~ryYkeIPLsEIl~v~~~~~~~~vp~~~~phcFEI~T~~--~vyfVge~p~~~~~~~~g~g~d  510 (888)
T KOG4236|consen  433 YWRLDSKCITLFQNESTNRYYKEIPLSEILSVSSNNGFSLVPAGTNPHCFEIRTAT--TVYFVGENPSSTPGGESGVGLD  510 (888)
T ss_pred             hheeccceeEeeecCCCceeEEeecHHHhheeeccCCcccCCCCCCCceEEEEeee--EEEEecCCCCCCccccccccch
Confidence            33577889999999988889999999765 45544321   112458999998765  55666666            56


Q ss_pred             HHHHHHHHHHHhhhhccCC
Q psy4640          89 SMIQWMNALSLASILQNSS  107 (109)
Q Consensus        89 e~~~Wi~aI~~a~~~~~~~  107 (109)
                      -.+.|-.||+.|.++-.|.
T Consensus       511 ~a~~w~~ai~~alMpV~pq  529 (888)
T KOG4236|consen  511 AAQGWETAIQQALMPVTPQ  529 (888)
T ss_pred             hhccCchhhhhcccccccC
Confidence            6999999999998776543

>KOG3543|consensus

Probab=94.96  E-value=0.0072  Score=50.86  Aligned_cols=66  Identities=20%  Similarity=0.177  Sum_probs=49.4

Q ss_pred             EEcCCCCCcccEEEEcCCeEEeecCCCCc-ccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          35 VTDRFEEEKLLGSILLPSYKISPCSSDDK-VFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        35 yyk~~~d~~p~G~I~L~~~~V~~~~~~~~-~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      -|..+ ..+|...|.|+||+|.-.++... .+.++-|.....+ -+..|+.++++|+.-|++|+-+|+-
T Consensus       500 syrek-kaepqel~qldgytvdytdp~pglqgg~~ffnavkeg-dtvifasddeqdr~lwvqamyratg  566 (1218)
T KOG3543|consen  500 SYREK-KAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEG-DTVIFASDDEQDRHLWVQAMYRATG  566 (1218)
T ss_pred             hhhhc-ccChHHHhhccCeeeccCCCCCccccchHHHHHhccC-ceEEeccCchhhhhHHHHHHHHhhC
Confidence            34433 46899999999999976554321 2334557766555 6899999999999999999999873

>KOG1451|consensus

Probab=94.84  E-value=0.04  Score=45.99  Aligned_cols=59  Identities=19%  Similarity=0.185  Sum_probs=41.9

Q ss_pred             cccEEEEcCCeEEeecCCCCcccceeeEEEee-CCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640          43 KLLGSILLPSYKISPCSSDDKVFRKFSFKAEH-ANMRTYYFAADTRESMIQWMNALSLASILQ  104 (109)
Q Consensus        43 ~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~-~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~  104 (109)
                      .+...+.|..|.=..-   |...|+|||.+.. ...-+..++|-|++++..||+|+..+--.+
T Consensus       311 g~~~~~~lKsC~RRkt---dSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~ep~Y  370 (812)
T KOG1451|consen  311 GQTATFKLKSCSRRKT---DSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGAEPSY  370 (812)
T ss_pred             CCcceEEehhhccCcc---cccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCCCccc
Confidence            4555667766653322   3356789999964 223489999999999999999998874333

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=94.74  E-value=0.16  Score=34.59  Aligned_cols=55  Identities=20%  Similarity=0.210  Sum_probs=37.1

Q ss_pred             EEEEcCCeEEeecCCCCcccceeeEEEee-CCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640          46 GSILLPSYKISPCSSDDKVFRKFSFKAEH-ANMRTYYFAADTRESMIQWMNALSLASILQ  104 (109)
Q Consensus        46 G~I~L~~~~V~~~~~~~~~~k~~~F~i~~-~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~  104 (109)
                      ..|.|....++.....    .+..|.|.. .....|.++|.|.+..+.|++.|+.....|
T Consensus        63 ~~ikls~lglte~v~g----d~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q  118 (133)
T cd01227          63 QSLKMTAVGITENVKG----DTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQ  118 (133)
T ss_pred             eeEEeecccccccCCC----CccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence            4566655544332221    244577643 234689999999999999999999877654

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15408 PH_7: Pleckstrin homology domain

Probab=94.09  E-value=0.066  Score=34.25  Aligned_cols=75  Identities=15%  Similarity=0.144  Sum_probs=48.2

Q ss_pred             eEEeeCCeEEEEcCCCCCcccEEEEcCCeEEee-------cCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHH
Q psy4640          25 DSIGSRNGLAVTDRFEEEKLLGSILLPSYKISP-------CSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL   97 (109)
Q Consensus        25 ~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~-------~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI   97 (109)
                      +.+|++..|..|.++.. .-+.++.|...-+..       +.+.. .-.-|.|-...++.|..-+-|+|.+-|+.||+++
T Consensus        16 F~~L~~K~~~~~~~KGG-~~L~sF~L~~s~~s~Pm~~~~~A~~N~-Gi~A~G~L~~~~~~~~~~~FA~S~~~~~~Wi~~m   93 (104)
T PF15408_consen   16 FVMLRSKQFNMYEDKGG-QYLCSFQLSSSVVSHPMVNFSQAVPNL-GINAFGFLMYSPSRRHVQCFASSKKVCQSWIQVM   93 (104)
T ss_pred             HHhhhhceeEEecccCC-ceeeeeehhhhhhhcccccccccCCCC-CeeEEEEEEecCCcchhhhhhhHHHHHHHHHHHh
Confidence            46788888888887643 334444554322211       11100 0123566667788888889999999999999999


Q ss_pred             HHhh
Q psy4640          98 SLAS  101 (109)
Q Consensus        98 ~~a~  101 (109)
                      +.-+
T Consensus        94 N~~s   97 (104)
T PF15408_consen   94 NSPS   97 (104)
T ss_pred             cChh
Confidence            8644

>KOG4407|consensus

Probab=93.96  E-value=0.0045  Score=55.28  Aligned_cols=90  Identities=20%  Similarity=0.172  Sum_probs=66.2

Q ss_pred             cccCCCCCcccccCCceE------EeeCCeEEEEcCCCC--------------CcccEEEEcCCeEEeecCCCCccccee
Q psy4640           9 LSSSSPSSRKSVGSDLDS------IGSRNGLAVTDRFEE--------------EKLLGSILLPSYKISPCSSDDKVFRKF   68 (109)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~------vL~~~~L~yyk~~~d--------------~~p~G~I~L~~~~V~~~~~~~~~~k~~   68 (109)
                      +..++.+++|.+|+++..      +|.++.|+.+++..+              ....-.+.|.+|.+.+.-.+  .++..
T Consensus       931 ~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~yse--tkrn~ 1008 (1973)
T KOG4407|consen  931 VLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQYSE--TKRNQ 1008 (1973)
T ss_pred             eeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhhhh--hhhhh
Confidence            334556777888888774      789999999998765              12234577777766543221  35678


Q ss_pred             eEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          69 SFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        69 ~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      +|++...+...+.|+|++.++|..|++.+...
T Consensus      1009 vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~S 1040 (1973)
T KOG4407|consen 1009 VFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSS 1040 (1973)
T ss_pred             HHHhHHHHHHhHhhccCccccccchhhhhhhc
Confidence            89997766678999999999999999988553

>KOG4424|consensus

Probab=93.81  E-value=0.14  Score=42.51  Aligned_cols=37  Identities=19%  Similarity=0.151  Sum_probs=32.5

Q ss_pred             cceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          65 FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        65 ~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      ..++.|.+..+ .|..-|.|.|+++..+|+++|+.|+-
T Consensus       334 ~~~~tF~~~G~-~r~vel~a~t~~ek~eWv~~I~~~Id  370 (623)
T KOG4424|consen  334 ELPHTFILTGK-KRGVELQARTEQEKKEWVQAIQDAID  370 (623)
T ss_pred             cCCceEEEecc-cceEEeecCchhhHHHHHHHHHHHHH
Confidence            45789999765 49999999999999999999999874

>KOG0705|consensus

Probab=92.90  E-value=0.08  Score=44.16  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=30.7

Q ss_pred             eeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          68 FSFKAEHANMRTYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        68 ~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      ++|.|+.....++.|.|.+.+|++.||+||..-+.
T Consensus       446 e~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIl  480 (749)
T KOG0705|consen  446 ECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQIL  480 (749)
T ss_pred             ceEEEeccccchhhhhhcchhhHHHHHHHHHHHHH
Confidence            59999877778999999999999999999986543

>KOG4807|consensus

Probab=92.16  E-value=0.00089  Score=53.23  Aligned_cols=81  Identities=19%  Similarity=0.182  Sum_probs=64.0

Q ss_pred             ccccCCceEEeeCCeEEEEcCCCC---CcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHH
Q psy4640          18 KSVGSDLDSIGSRNGLAVTDRFEE---EKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW   93 (109)
Q Consensus        18 ~~~~~~~~~vL~~~~L~yyk~~~d---~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~W   93 (109)
                      -+++...|.|+++..|-||.++..   ....|.|.|.+|+ |..+..    .+.|.|.|.+.+ ..|.++|-+.--+..|
T Consensus        32 t~~~~k~~~~~~~~~~~~~~d~~A~~~~~L~~~~~LR~C~~v~e~a~----q~nY~~~i~~~~-~~~tL~~~~s~Ir~~~  106 (593)
T KOG4807|consen   32 TSQWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAV----QRNYGFQIHTKD-AVYTLSAMTSGIRRNW  106 (593)
T ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHhcccCCccccHHHHHHHHHHHH----Hhccceeecccc-hhhhhHHHHHHHHHHH
Confidence            466777889999999999998754   3567999999996 433322    457899997655 7899999999999999


Q ss_pred             HHHHHHhhhh
Q psy4640          94 MNALSLASIL  103 (109)
Q Consensus        94 i~aI~~a~~~  103 (109)
                      +.|+++...+
T Consensus       107 ~~A~~kT~~P  116 (593)
T KOG4807|consen  107 IEALRKTVRP  116 (593)
T ss_pred             HHHHHhccCC
Confidence            9999975443

>KOG0517|consensus

Probab=91.66  E-value=0.0052  Score=56.27  Aligned_cols=76  Identities=18%  Similarity=0.154  Sum_probs=55.2

Q ss_pred             eEEeeCCeEEEEcCCCCCc------ccEEEEc--CCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHH
Q psy4640          25 DSIGSRNGLAVTDRFEEEK------LLGSILL--PSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA   96 (109)
Q Consensus        25 ~~vL~~~~L~yyk~~~d~~------p~G~I~L--~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~a   96 (109)
                      +++++.+.|-+|+|.....      ..|-.+|  ..+.|....  |..+|+++|.+..+....|.|.|.++++|+.|+.+
T Consensus      2327 y~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~--dy~kkk~v~~l~~~~gae~llq~k~ee~m~sWL~~ 2404 (2473)
T KOG0517|consen 2327 YCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVAS--DYHKKKHVFLLQLPPGAEHLLQAKDEEEMESWLRA 2404 (2473)
T ss_pred             HHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHHH--HHHHHhHhhhhcCCchHHHHHhhccHHHHHHHHHH
Confidence            4789999999999875221      1233333  344444332  33577899999888889999999999999999999


Q ss_pred             HHHhhh
Q psy4640          97 LSLASI  102 (109)
Q Consensus        97 I~~a~~  102 (109)
                      +..+..
T Consensus      2405 ~a~~~~ 2410 (2473)
T KOG0517|consen 2405 LAVKRA 2410 (2473)
T ss_pred             HHHHHH
Confidence            887663

>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function

Probab=91.06  E-value=0.87  Score=30.15  Aligned_cols=38  Identities=13%  Similarity=0.205  Sum_probs=32.2

Q ss_pred             cceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640          65 FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASIL  103 (109)
Q Consensus        65 ~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~  103 (109)
                      ...+.|-|.+. .+..-|-|+|..+.+.|++.|......
T Consensus        68 ~~~~yfgL~T~-~G~vEfec~~~~~~k~W~~gI~~mL~~  105 (110)
T PF08458_consen   68 EERRYFGLKTA-QGVVEFECDSQREYKRWVQGIQHMLSQ  105 (110)
T ss_pred             ceEEEEEEEec-CcEEEEEeCChhhHHHHHHHHHHHHHH
Confidence            35678999877 589999999999999999999886543

>KOG3523|consensus

Probab=90.71  E-value=0.3  Score=40.96  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=27.4

Q ss_pred             cceeeEEEe----e-CCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          65 FRKFSFKAE----H-ANMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        65 ~k~~~F~i~----~-~~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      ..+|.|.+.    + ...-.+.|+|+|+.|+++||.||.-
T Consensus       553 ~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~p  592 (695)
T KOG3523|consen  553 SRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALRP  592 (695)
T ss_pred             cccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcCC
Confidence            345788874    1 2345799999999999999999983

>PF15411 PH_10: Pleckstrin homology domain

Probab=90.07  E-value=1.2  Score=29.54  Aligned_cols=50  Identities=22%  Similarity=0.420  Sum_probs=34.7

Q ss_pred             ccEEEEcCCeE-EeecCCCCcccceeeEEEee---CCceEEEEEcCCHHHHHHHHHHH
Q psy4640          44 LLGSILLPSYK-ISPCSSDDKVFRKFSFKAEH---ANMRTYYFAADTRESMIQWMNAL   97 (109)
Q Consensus        44 p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~---~~~r~y~fsA~s~~e~~~Wi~aI   97 (109)
                      .+|.|.+...+ |.....    ...|...|.-   ++.-.|.|...|++.|+.|-.+|
T Consensus        63 LKGrI~i~~i~~v~~~s~----~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L  116 (116)
T PF15411_consen   63 LKGRIYISNITEVSSSSK----PGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL  116 (116)
T ss_pred             EeeEEEEEeeeeeeccCC----CCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence            35778776543 333222    2357777753   45678999999999999998875

>KOG2070|consensus

Probab=89.89  E-value=0.72  Score=38.09  Aligned_cols=71  Identities=8%  Similarity=0.158  Sum_probs=48.2

Q ss_pred             EeeCCeEEEEc-CCCCC--cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          27 IGSRNGLAVTD-RFEEE--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        27 vL~~~~L~yyk-~~~d~--~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      +|=.+.|.++. ++...  --.|-+++.|..|...++.+  .....|.|..+.-.-....|+++.++++|+++++.
T Consensus       331 ~LF~~~llflsvs~rMs~fIyegKlp~tG~iV~klEdte--~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~  404 (661)
T KOG2070|consen  331 LLFPNVLLFLSVSPRMSGFIYEGKLPTTGMIVTKLEDTE--NHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNK  404 (661)
T ss_pred             eeccceeeeeEeccccchhhhccccccceeEEeehhhhh--cccccccccccchhheeeccCChHHHHHHHHHhhh
Confidence            44444444444 33322  24588999999887765533  34567998654434467889999999999999996

>KOG3520|consensus

Probab=86.46  E-value=0.86  Score=40.77  Aligned_cols=57  Identities=16%  Similarity=0.138  Sum_probs=40.4

Q ss_pred             ccEEEEcCCeEEeecCCCCcccceeeEEEee--CCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640          44 LLGSILLPSYKISPCSSDDKVFRKFSFKAEH--ANMRTYYFAADTRESMIQWMNALSLASILQ  104 (109)
Q Consensus        44 p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~--~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~  104 (109)
                      -..+|+|...-|..+..+   + +--|-|..  .+...|-+.|.|.+|++-||+.|..++...
T Consensus       666 ~spVisL~~livRevAtd---~-ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~  724 (1167)
T KOG3520|consen  666 KSPVISLQKLIVREVATD---E-KAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASC  724 (1167)
T ss_pred             CCCceehHHHHHHHHhcc---c-cceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhC
Confidence            456888876644444332   2 22355543  357899999999999999999999988654

>KOG3723|consensus

Probab=85.63  E-value=0.35  Score=40.61  Aligned_cols=76  Identities=16%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             eEEeeCCeEEEEcCCC-CCcccEEEEcCCeE-EeecCCCC-cccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          25 DSIGSRNGLAVTDRFE-EEKLLGSILLPSYK-ISPCSSDD-KVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        25 ~~vL~~~~L~yyk~~~-d~~p~G~I~L~~~~-V~~~~~~~-~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      ++.|.+-.|.|-|... +..-...|+|...+ |..+.... ...-+-.|+|-+.+ .+|.+.|.+++..++|+..|+-|.
T Consensus       758 YFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD-~T~ILKaKDeKNAEEWlqCL~Iav  836 (851)
T KOG3723|consen  758 YFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD-KTYILKAKDEKNAEEWLQCLNIAV  836 (851)
T ss_pred             eEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcccchhhheeecC-ceEEeecccccCHHHHHHHHHHHH
Confidence            4789999999877442 22223678887653 33232110 00113469998776 689999999999999999998765

>PF15404 PH_4: Pleckstrin homology domain

Probab=83.35  E-value=1.5  Score=31.53  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          77 MRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        77 ~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      +|++-|-|.|..|++.||-+|...
T Consensus       161 gks~VF~ARSRqERD~WV~~I~~E  184 (185)
T PF15404_consen  161 GKSMVFMARSRQERDLWVLAINTE  184 (185)
T ss_pred             CcEEEEEeccHHHHHHHHHHHHhc
Confidence            368899999999999999999753

>PF12480 DUF3699: Protein of unknown function (DUF3699) ; InterPro: IPR022168 This domain family is found in eukaryotes, and is approximately 80 amino acids in length

Probab=80.93  E-value=7.9  Score=23.85  Aligned_cols=51  Identities=20%  Similarity=0.268  Sum_probs=32.2

Q ss_pred             cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCC-----HHHHHHHHHHHH
Q psy4640          43 KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADT-----RESMIQWMNALS   98 (109)
Q Consensus        43 ~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s-----~~e~~~Wi~aI~   98 (109)
                      +....++|...++.....+     +-.+++.....|.||+.-.+     +.....|+..|.
T Consensus         7 eLtr~lplk~v~l~v~~~~-----~~~l~lk~~t~r~~yl~L~~~~~~~~~~F~~w~~lv~   62 (77)
T PF12480_consen    7 ELTRLLPLKFVKLSVHDLE-----KQQLKLKLVTGRPFYLQLCAPADKPETLFGEWIRLVS   62 (77)
T ss_pred             EEeccCCccccEEEEEcCc-----ccEEEEEEccCCEEEEEEeCcccCcchhHHHHHHHHH
Confidence            3445566655444443331     23455544456999999555     778899999988

>KOG3531|consensus

Probab=80.60  E-value=1.6  Score=38.13  Aligned_cols=80  Identities=15%  Similarity=0.116  Sum_probs=53.6

Q ss_pred             ccccCCceEEeeCCeEEEEcCCC---CCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHH
Q psy4640          18 KSVGSDLDSIGSRNGLAVTDRFE---EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        18 ~~~~~~~~~vL~~~~L~yyk~~~---d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi   94 (109)
                      |.+-.+-++...+-.||--|+..   .-...|.|||. -+++-++.+  -.-+|||.|.. ..+..|.+|.+..+++.|+
T Consensus       762 kgLqqrmfFLfsdillytsk~~~~~~~fri~g~lP~~-l~~en~en~--~s~p~~~ti~~-~qk~i~vsast~~~sk~~~  837 (1036)
T KOG3531|consen  762 KGLQQRMFFLFSDILLYTSKGPDVQKCFRINGDLPLT-LTMENSENE--WSVPHCFTISG-AQKQIYVSASTRRESKKWE  837 (1036)
T ss_pred             ccchhhhhhhhhhhheeccCCCChhheeEeccCCceE-eeeeccccc--ccCCceEEEec-cceEEEEeccchhhhhhhh
Confidence            33434333444554455444422   23466888887 666655442  35589999875 4589999999999999999


Q ss_pred             HHHHHhh
Q psy4640          95 NALSLAS  101 (109)
Q Consensus        95 ~aI~~a~  101 (109)
                      ..++.|+
T Consensus       838 ~~r~~~i  844 (1036)
T KOG3531|consen  838 FDRRKAI  844 (1036)
T ss_pred             hccchhh
Confidence            9887776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	109
2dkp_A	128	Solution Structure Of The Ph Domain Of Pleckstrin H		2e-15
1upq_A	123	Crystal Structure Of The Pleckstrin Homology (Ph) D		1e-12
2d9y_A	117	Solution Structure Of The Ph Domain Of Pepp-3 From		7e-11
2yry_A	122	Solution Structure Of The Ph Domain Of Pleckstrin H		1e-10

>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology Domain-Containing Protein Family A Member 5 From Human Length = 128

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct: 57  KEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 116
Query: 100 ASILQNSS 107
           A+++Q S 
Sbjct: 117 AALVQTSG 124

>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain Of Pepp1 Length = 123

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 40/70 (57%)
Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
            EE +LGS+LLPSY I P        R+F+F AEH  MRTY  AADT E +  W+ AL  
Sbjct: 47  REESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGR 106
Query: 100 ASILQNSSTG 109
           AS  +    G
Sbjct: 107 ASRAEGDDYG 116

>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human Length = 117

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 45/66 (68%)
Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           +EE +LGSI L S++++     D + RK +FKAEHA +RTY+F+A++ E    W+ A+  
Sbjct: 47  KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 106
Query: 100 ASILQN 105
           A+ +Q+
Sbjct: 107 AARVQS 112

>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology Domain-Containing Family A Member 6 From Human Length = 122

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           +EE +LGSI L S++++     D + RK +FKAEHA +RTY+F+A++ E    W+ A+  
Sbjct: 58  KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 117
Query: 100 ASILQ 104
           A+ +Q
Sbjct: 118 AARVQ 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
2dkp_A	128	Pleckstrin homology domain-containing family A mem	2e-21
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	4e-21
2yry_A	122	Pleckstrin homology domain-containing family A mem	6e-21
2d9y_A	117	Pleckstrin homology domain-containing protein fami	1e-20
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	2e-19
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	1e-18
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	3e-18
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	5e-17
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	1e-16
3cxb_B	112	Pleckstrin homology domain-containing family M mem	8e-16
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	2e-15
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	7e-15
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	2e-14
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	3e-14
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	1e-13
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	8e-13
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	3e-12
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	4e-12
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	2e-11
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	2e-11
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	8e-11
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	8e-11
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	9e-11
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	9e-11
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	2e-10
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	5e-10
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	1e-09
2d9v_A	130	Pleckstrin homology domain-containing protein fami	2e-09
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	2e-09
1wi1_A	126	Calcium-dependent activator protein for secretion,	3e-09
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	3e-09
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	4e-09
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	1e-08
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	1e-08
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	1e-08
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	2e-08
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	4e-08
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	9e-08
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	2e-07
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	4e-07
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	4e-07
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	6e-07
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	7e-07
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	9e-07
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	1e-06
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	2e-06
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	2e-06
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	2e-06
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	2e-06
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	5e-06
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	7e-06
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	8e-06
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	2e-05
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	6e-04

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 81.0 bits (200), Expect = 2e-21
 Identities = 35/68 (51%), Positives = 50/68 (73%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           +EE +LGSILLPS++I+  +S+D + RK++FKA H NMRTYYF  DT + M  WM A+  
Sbjct: 57  KEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 116

Query: 100 ASILQNSS 107
           A+++Q S 
Sbjct: 117 AALVQTSG 124

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 80.2 bits (198), Expect = 4e-21
 Identities = 33/70 (47%), Positives = 40/70 (57%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
            EE +LGS+LLPSY I P        R+F+F AEH  MRTY  AADT E +  W+ AL  
Sbjct: 47  REESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGR 106

Query: 100 ASILQNSSTG 109
           AS  +    G
Sbjct: 107 ASRAEGDDYG 116

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 79.8 bits (197), Expect = 6e-21
 Identities = 27/65 (41%), Positives = 44/65 (67%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           +EE +LGSI L S++++     D + RK +FKAEHA +RTY+F+A++ E    W+ A+  
Sbjct: 58  KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 117

Query: 100 ASILQ 104
           A+ +Q
Sbjct: 118 AARVQ 122

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 78.6 bits (194), Expect = 1e-20
 Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           +EE +LGSI L S++++     D + RK +FKAEHA +RTY+F+A++ E    W+ A+  
Sbjct: 47  KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 106

Query: 100 ASILQ-NSSTG 109
           A+ +Q   S+G
Sbjct: 107 AARVQSGPSSG 117

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score = 75.1 bits (185), Expect = 2e-19
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           E+   L S  L  + ++    ++       F+  H  M  Y F AD   S  +W++A   
Sbjct: 43  EDVAALESQPLLGFTVTLVKDENS--ESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQE 100

Query: 100 ASILQNSSTG 109
            ++    S+G
Sbjct: 101 GTV-SGPSSG 109

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 112

 Score = 73.5 bits (180), Expect = 1e-18
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           ++ +L  +I LPS K+S    ++++     +K + A  +++Y +A + E   QW+  LS 
Sbjct: 45  QDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAK-QSWYLSASSAELQQQWLETLST 103

Query: 100 AS 101
           A+
Sbjct: 104 AA 105

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 72.5 bits (178), Expect = 3e-18
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVF-RKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
           + ++  G+ L+  Y +       +   ++  F+    + RTY F A +      W++ +S
Sbjct: 42  KSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQIS 101

Query: 99  LA 100
             
Sbjct: 102 FL 103

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score = 69.8 bits (171), Expect = 5e-17
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFK-------AEHANMRTYYFAADTRESMIQ 92
           E+ K  G + LP   I   +++ +   KF F+              +Y   A ++  M +
Sbjct: 43  EDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEE 102

Query: 93  WMNALSLASILQNSSTG 109
           W+  L         S+G
Sbjct: 103 WVKFLRRV-AGSGPSSG 118

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 69.2 bits (169), Expect = 1e-16
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRK-FSFKAEHANMRTYYFAADTRESMIQWMNALS 98
           ++++  G   +  Y +   ++  K  +K   F+    + R Y F A + +   +W+  L 
Sbjct: 56  KDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLK 115

Query: 99  LASILQNSST 108
                  S  
Sbjct: 116 FILQDLGSDV 125

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 66.3 bits (162), Expect = 8e-16
 Identities = 11/61 (18%), Positives = 24/61 (39%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
            +   L S+ +   +   C   +   R  +F+   ++      +A++   M +WM  L  
Sbjct: 39  TDVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQ 98

Query: 100 A 100
           A
Sbjct: 99  A 99

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 65.5 bits (160), Expect = 2e-15
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
            +    G I L    ++     D   R F FK      + ++F A   E    W+  ++ 
Sbjct: 40  SDNSPKGMIPLKGSTLT-SPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINK 98

Query: 100 A 100
           A
Sbjct: 99  A 99

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score = 64.4 bits (157), Expect = 7e-15
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 40  EEEKLLGSILLPSYKISPCSSD---DKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96
             E  LG+I L    ++   S+    K   +  F+   A+   Y+  A T +   +W+ A
Sbjct: 55  GAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKA 114

Query: 97  LSLASILQNSS 107
           + +AS    S 
Sbjct: 115 IQMASRTGKSG 125

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 65.2 bits (158), Expect = 2e-14
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRK-FSFKAEHANMRTYYFAADTRESMIQWMNALS 98
           ++++  G   +  Y +   ++  K  +K   F+    + R Y F A + +   +W+  L 
Sbjct: 145 KDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLK 204

Query: 99  LA 100
             
Sbjct: 205 FI 206

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 62.4 bits (152), Expect = 3e-14
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 40  EEEKLLGSILLPSYKIS---PCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96
             E  LG+I L    ++     S+  K   +  F+   A+   Y+  A T +   +W+ A
Sbjct: 44  GAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKA 103

Query: 97  LSLAS 101
           + +AS
Sbjct: 104 IQMAS 108

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 61.3 bits (149), Expect = 1e-13
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 40  EEEKLLGSILLPS-YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
            E++ L  I L   +K+  C   D + R   F+    + RT+Y  AD+ E M  W+ A+S
Sbjct: 49  LEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS-RTFYVQADSPEEMHSWIKAVS 107

Query: 99  LASILQNSS 107
            A + Q   
Sbjct: 108 GAIVAQRGP 116

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 59.6 bits (144), Expect = 8e-13
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
             ++  GSI L S      ++     R+F+F+ +  +  +Y  AAD+   M +W+  L+ 
Sbjct: 65  ISKEPKGSIFLDSCMGVVQNNKV---RRFAFELKMQDKSSYLLAADSEVEMEEWITILNK 121

Query: 100 ASILQNSST 108
              L   + 
Sbjct: 122 ILQLNFEAA 130

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 57.2 bits (138), Expect = 3e-12
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 37  DRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96
           DR   +     + L   ++ P  S D     +SF+  H         A + E M  W+  
Sbjct: 39  DRNRSKVAQQPLSLVGCEVVPDPSPD---HLYSFRILHKGEELAKLEAKSSEEMGHWLGL 95

Query: 97  LSLAS 101
           L   S
Sbjct: 96  LLSES 100

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 56.8 bits (137), Expect = 4e-12
 Identities = 6/69 (8%), Positives = 20/69 (28%), Gaps = 8/69 (11%)

Query: 40  EEEKLLGSILLPS--------YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMI 91
             + +   + +P          +       D   +    +    + +T    A++ +  +
Sbjct: 41  TRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCL 100

Query: 92  QWMNALSLA 100
            W   L  +
Sbjct: 101 AWKFTLQDS 109

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 57.3 bits (138), Expect = 2e-11
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
            EEKL G++ + S         D   ++       A+ RT++  A++ E   QW + LS 
Sbjct: 98  SEEKLKGTVEVRSA----KEIIDNTNKENGIDIIMAD-RTFHLIAESPEDASQWFSVLSQ 152

Query: 100 ASILQNSS 107
                +  
Sbjct: 153 VHSSTDQE 160

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 55.4 bits (133), Expect = 2e-11
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 40  EEEKLLGSILLPSY------KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW 93
            +   +G+  + S       K+S  +   K    F F   +A  + Y+  A+ ++ +  W
Sbjct: 53  PQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFV-INALSQRYFLQANDQKDLKDW 111

Query: 94  MNALSLAS 101
           + AL+ AS
Sbjct: 112 VEALNQAS 119

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score = 54.1 bits (130), Expect = 8e-11
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVF------RKFSFKAEHANMRTYYFAADTRESMIQW 93
           EE + +G   L    +S    +          +   FK    +   YY  A ++    +W
Sbjct: 56  EENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEW 115

Query: 94  MNALSLASILQNSSTG 109
           + A+    +    S+G
Sbjct: 116 IEAIK--KLTSGPSSG 129

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 53.6 bits (129), Expect = 8e-11
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           ++   L SI L S      +       +  F+      R     A T+++M+ W+  L +
Sbjct: 47  QDANPLDSIDLSSAVFDCKADA----EEGIFEI-KTPSRVITLKAATKQAMLYWLQQLQM 101

Query: 100 ASILQNSST 108
                ++S 
Sbjct: 102 KRWEFHNSP 110

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 53.6 bits (129), Expect = 9e-11
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 7/75 (9%)

Query: 40  EEEKLLGSILLPS-----YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWM 94
            + +  G I L              +   V  K  F  +    R Y F A    S  QW+
Sbjct: 45  MDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTR-RVYNFCAQDVPSAQQWV 103

Query: 95  NALSLASILQNSSTG 109
           + +  + +    S+G
Sbjct: 104 DRIQ-SCLSSGPSSG 117

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score = 53.8 bits (129), Expect = 9e-11
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 19/85 (22%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVF------------------RKFSFKAEHANMRTYY 81
            +++  G I L +  I       K                     +   +    N   Y 
Sbjct: 40  TDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYR 99

Query: 82  FAADTRESMIQWMNALSLASILQNS 106
            +A + E   +WM ++  ASI ++ 
Sbjct: 100 ISAPSPEEKEEWMKSIK-ASISRDP 123

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 52.8 bits (127), Expect = 2e-10
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           + +   G ILL        S  DK  +K  F       +T+  +A  ++   +W+ A+  
Sbjct: 43  DLKDKKGDILL-DENCCVESLPDKDGKKCLFLV-KCFDKTFEISASDKKKKQEWIQAIHS 100

Query: 100 A-SILQNSSTG 109
              +L+  S+G
Sbjct: 101 TIHLLKLGSSG 111

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134

 Score = 52.0 bits (124), Expect = 5e-10
 Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 21/82 (25%)

Query: 40  EEEKLLGSILLPSYKISPC--SSDDKVFRKFSF-------------------KAEHANMR 78
           + +  +G I L +        ++ +   R+ +F                     +   + 
Sbjct: 45  KRKNPIGRINLANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVT 104

Query: 79  TYYFAADTRESMIQWMNALSLA 100
             + +ADT+E    WM  L+  
Sbjct: 105 KNWLSADTKEERDLWMQKLNQV 126

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 50.9 bits (122), Expect = 1e-09
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 3/61 (4%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
              + +  + L     S    D    R   F       RT+Y  A T     +W+  L  
Sbjct: 53  MSPEPIRILDLTE--CSAVQFDYSQERVNCFCLVFPF-RTFYLCAKTGVEADEWIKILRW 109

Query: 100 A 100
            
Sbjct: 110 K 110

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 50.4 bits (120), Expect = 2e-09
 Identities = 9/78 (11%), Positives = 19/78 (24%), Gaps = 8/78 (10%)

Query: 40  EEEKLLGSILLPSYKIS--------PCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMI 91
             +     +++                   +   R              +  A+TR+  I
Sbjct: 44  TAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAI 103

Query: 92  QWMNALSLASILQNSSTG 109
            W  AL  A+     +  
Sbjct: 104 AWKTALMEANSTPAPAGA 121

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 49.7 bits (119), Expect = 2e-09
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 7/68 (10%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
           +E    G I L +  IS             F+      RT+ F  +  E    W++ L  
Sbjct: 44  KEMYSKGIIPLSA--ISTVRVQ----GDNKFEVVT-TQRTFVFRVEKEEERNDWISILLN 96

Query: 100 ASILQNSS 107
           A   Q+ +
Sbjct: 97  ALKSQSLT 104

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126

 Score = 49.9 bits (119), Expect = 3e-09
 Identities = 13/78 (16%), Positives = 27/78 (34%)

Query: 24  LDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFA 83
           L  +        + R ++ +    + L  Y +        +    +F        T  FA
Sbjct: 32  LVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDTVIFA 91

Query: 84  ADTRESMIQWMNALSLAS 101
           +D  +  I W+ A+  A+
Sbjct: 92  SDDEQDRILWVQAMYRAT 109

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 49.0 bits (117), Expect = 3e-09
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
             +   GSI +   +I   S+D+        +      + +Y  A       +W+ AL  
Sbjct: 36  VCKGSKGSIKMAVCEIKVHSADNT-----RMELIIPGEQHFYMKAVNAAERQRWLVALGS 90

Query: 100 AS 101
           + 
Sbjct: 91  SK 92

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 48.6 bits (116), Expect = 4e-09
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
            E    GSI L    I+P   D+    +F       N   +Y  A   +   QW++A+  
Sbjct: 38  TEYGCRGSICLSKAVITPHDFDEC---RFDI---SVNDSVWYLRAQDPDHRQQWIDAIEQ 91

Query: 100 A 100
            
Sbjct: 92  H 92

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Length = 125

 Score = 48.1 bits (114), Expect = 1e-08
 Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYY-------FAADTRESMIQ 92
           EE++    + + + K+        +  K  F   +   R  Y        A +T+E +  
Sbjct: 49  EEKEKKYMLSVDNLKLRDVE-KGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDS 107

Query: 93  WMNALSLASILQNSST 108
           W  +   A +      
Sbjct: 108 WKASFLRAGVYPERVG 123

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Length = 122

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 46  GSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101
            S  L +  I   S   K  +K   + + AN   +   A     M QW+ +L   S
Sbjct: 65  PSYDLQNAAIEIASDYTK--KKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS 118

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 48.0 bits (114), Expect = 1e-08
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 36  TDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95
            ++   +K  G++ L    ISP   D       +F    A+   Y   A   +    W++
Sbjct: 43  NEQSRNQKPRGTLQLAGAVISPSDED-----SHTFTVNAASGEQYKLRATDAKERQHWVS 97

Query: 96  ALSLAS 101
            L + +
Sbjct: 98  RLQICT 103

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score = 47.3 bits (112), Expect = 2e-08
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 55  ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
                   K  +K  FK   ++   Y F A   E M  W+ A+S A
Sbjct: 63  CEVALDYKK--KKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score = 46.9 bits (111), Expect = 4e-08
 Identities = 12/58 (20%), Positives = 21/58 (36%)

Query: 44  LLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101
             G + +   +     + D   RK  FK    + + Y F A     M  W+  ++ A 
Sbjct: 59  YHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI 116

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124

 Score = 46.0 bits (109), Expect = 9e-08
 Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 1/60 (1%)

Query: 41  EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
                 ++ L    +S    D    RK   +    +   Y    D+   +  W  A++  
Sbjct: 63  FSTPEYTVELRGATLSWAPKDKS-SRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQG 121

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 45.5 bits (107), Expect = 2e-07
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 43  KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI 102
           +    I + +  I    S+ K  RK  F+   ++     F A+ R+ M+ W+  +  +S 
Sbjct: 55  EEEQPISVNACLIDISYSETK--RKNVFRLTTSD-CECLFQAEDRDDMLAWIKTIQESSN 111

Query: 103 LQNSSTG 109
           L    TG
Sbjct: 112 LNEEDTG 118

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 7/60 (11%), Positives = 15/60 (25%), Gaps = 2/60 (3%)

Query: 41  EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
             +   S+ L    ++         R+            +   +D    +  W  AL   
Sbjct: 65  GSRPESSVDLRGAALAHGRHLSS--RRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTV 122

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 44.2 bits (104), Expect = 4e-07
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 37  DRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM------------RTYYFAA 84
           DR ++   + S+ L    ++  S  +      S  ++   +              + F A
Sbjct: 41  DRKKDLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKA 100

Query: 85  DTRESMIQWMNAL 97
           D+ ESM+ W + L
Sbjct: 101 DSYESMMSWFDNL 113

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 44.3 bits (104), Expect = 6e-07
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 41  EEKLLGSILLPSYKI----SPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96
           ++   G I +   K                K+ F+  H    T Y  A + +S   W+  
Sbjct: 57  KKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDA-NTLYIFAPSPQSRDLWVKK 115

Query: 97  LSLA 100
           L   
Sbjct: 116 LKEE 119

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137

 Score = 43.9 bits (103), Expect = 7e-07
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 45  LGSILLPSYKISPCSSDDKVFRKFSFKAEH---ANMRTYYFAADTRESMIQWMNALSLAS 101
           +  + L   ++ P  +     +KF  K        M   Y      +   +WM    LAS
Sbjct: 54  IQQLNLKGCEVVPDVNVSG--QKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLAS 111

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385

 Score = 44.6 bits (104), Expect = 9e-07
 Identities = 7/81 (8%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 30  RNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE-HANMRTYYFAADTRE 88
           + G  ++    +     ++ + +  +     +D   R++ F+       ++    A++++
Sbjct: 305 QGGNLMSQARGDVAGGLAMDIDNCSVMAVDCED---RRYCFQITSFDGKKSSILQAESKK 361

Query: 89  SMIQWMNAL--SLASILQNSS 107
              +W+  +      I  + +
Sbjct: 362 DHEEWICTINNISKQIYLSEN 382

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A* Length = 173

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE---HANMRTYYFAADTRESMIQWMNA 96
                   + L   +++P  +     +KF+ K        M   +   D  +    WM A
Sbjct: 87  SSGTPAHQMNLRGCEVTPDVNISG--QKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAA 144

Query: 97  LSLASILQ 104
             LAS  +
Sbjct: 145 CRLASKGK 152

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 7/65 (10%), Positives = 21/65 (32%), Gaps = 2/65 (3%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
                  ++ + +  +       K  + F F   ++    + F   ++  +  W+ A+  
Sbjct: 64  HNSVPKHAVWVENSIVQAVPEHPK--KDFVFCLSNSLGDAFLFQTTSQTELENWITAIHS 121

Query: 100 ASILQ 104
           A    
Sbjct: 122 ACAAA 126

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 8/50 (16%), Positives = 19/50 (38%)

Query: 58  CSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSS 107
            S  +   ++  F   ++    Y F A ++  +  W+ A+  A     + 
Sbjct: 80  QSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFAK 129

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 30  RNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES 89
           +NG+         +    + L + ++ P +       K SF     + RTY+F A+  + 
Sbjct: 35  KNGILTISHATSNRQPAKLNLLTCQVKPNAE-----DKKSFDLIS-HNRTYHFQAEDEQD 88

Query: 90  MIQWMNAL--SLASILQNSSTG 109
            + W++ L  S    L  + +G
Sbjct: 89  YVAWISVLTNSKEEALTMAFSG 110

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 37  DRFEEEKLLGSILLPSYKISPCSSD-DKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95
           D  + E  L +  +   ++          F     +      RT++   +T E   +W  
Sbjct: 46  DVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFH--VETPEEREEWTT 103

Query: 96  ALSLAS 101
           A+   +
Sbjct: 104 AIQTVA 109

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 41.6 bits (97), Expect = 5e-06
 Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 40  EEEKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 97
           +    +  + +     ++  +S +K   KF+               +  ES  +W   +
Sbjct: 53  KSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPK---EEVQLKTENTESGEEWRGFI 108

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A Length = 124

 Score = 40.9 bits (95), Expect = 7e-06
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 40  EEEKLLGSIL-----LPSYKISPCSSDDKVFRKFSFKAEHANM--RTYYFAADTRESMIQ 92
           EE+  LGS+      L +Y +       K  + F F  E          FA D  E + +
Sbjct: 51  EEDNPLGSLCRGILDLNTYNVVKAP-QGKNQKSFVFILEPKQQGDPPVEFATDKVEELFE 109

Query: 93  WMNAL 97
           W  ++
Sbjct: 110 WFQSI 114

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 40.9 bits (95), Expect = 8e-06
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 21/90 (23%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVF-------------RKFSFKAEH------ANMRTY 80
           +  + +G++LL + +I    S    F                  K E           +Y
Sbjct: 42  KNGQWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSY 101

Query: 81  Y-FAADTRESMIQWMNALSLASILQNSSTG 109
               A +      WM+AL LA +    S+G
Sbjct: 102 LIIRATSESDGRCWMDALELA-LKSGPSSG 130

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 4/57 (7%)

Query: 46  GSILLPSYKISPCSSDDKVFRKFSFKAEHANM-RTYYFAADTRESMIQWMNALSLAS 101
             + +  + +      +       F+  + +    Y F   +R   I W   L  A 
Sbjct: 58  KKVSIVGWMVQLPDDPEH---PDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDAC 111

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 23  DLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYF 82
           D++ I     +        E+ +      S ++   S  ++    + F+  +      Y 
Sbjct: 56  DVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIER--FPYPFQVVYDE-GPLYV 112

Query: 83  AADTRESMIQWMNALSLAS 101
            + T E   +W++ L    
Sbjct: 113 FSPTEELRKRWIHQLKNVI 131

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	99.92
1wi1_A	126	Calcium-dependent activator protein for secretion,	99.88
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	99.88
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	99.88
3cxb_B	112	Pleckstrin homology domain-containing family M mem	99.87
2d9y_A	117	Pleckstrin homology domain-containing protein fami	99.87
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	99.87
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	99.87
2dkp_A	128	Pleckstrin homology domain-containing family A mem	99.86
2yry_A	122	Pleckstrin homology domain-containing family A mem	99.85
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	99.85
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	99.85
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	99.84
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	99.82
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	99.82
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	99.82
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.82
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	99.81
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	99.81
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	99.81
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	99.81
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.8
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	99.8
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	99.8
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	99.79
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	99.79
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	99.79
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	99.79
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	99.79
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	99.78
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	99.78
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	99.78
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	99.78
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	99.77
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	99.77
2d9v_A	130	Pleckstrin homology domain-containing protein fami	99.77
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	99.77
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	99.77
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	99.77
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	99.76
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	99.76
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	99.76
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	99.76
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	99.75
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.75
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	99.75
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	99.74
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	99.73
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	99.72
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.7
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	99.69
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	99.68
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.68
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	99.66
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.66
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.65
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.65
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	99.64
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	99.63
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	99.6
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	99.59
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.56
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	99.55
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	99.53
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	99.46
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	99.32
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	99.27
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.12
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	98.99
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	98.97
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	98.94
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	98.76
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	98.6
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	98.39
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	98.37
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	98.08
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	98.02
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	97.95
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	97.79
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	97.79
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	97.75
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	97.74
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	97.69
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	97.68
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.67
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	97.6
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	97.6
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.59
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	97.58
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.58
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	97.56
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	97.54
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	97.52
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	97.51
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	97.5
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	97.37
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	97.35
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	97.34
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	97.09
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	96.0
1fho_A	119	UNC-89; pleckstrin homology domain, electrostatics	93.2
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	89.89

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.92  E-value=8.5e-25  Score=143.86  Aligned_cols=89  Identities=24%  Similarity=0.296  Sum_probs=76.7

Q ss_pred             cccCCceEEeeCC---eEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640          19 SVGSDLDSIGSRN---GLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        19 ~~~~~~~~vL~~~---~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~   95 (109)
                      +.+++.|+||+++   +||||++++|.+|.|.|+|+||+|..+.+.+...++|+|+|.+++ ++|+|+|+|+++|++||+
T Consensus        21 ~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g~I~L~g~~V~~~~~~~~~~~~~~Fki~~~~-~~y~f~A~s~e~~~~Wl~   99 (112)
T 2coc_A           21 ETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAK-QSWYLSASSAELQQQWLE   99 (112)
T ss_dssp             SCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETT-EEEEEEESSHHHHHHHHH
T ss_pred             CCceEEEEEEECCCccEEEEECCCCccCcceEEEcCCCEEEecCcccccCCCCEEEEecCC-eEEEEEcCCHHHHHHHHH
Confidence            4455579999985   899999999999999999999999865444445678999999765 899999999999999999


Q ss_pred             HHHHhhhhccCCC
Q psy4640          96 ALSLASILQNSST  108 (109)
Q Consensus        96 aI~~a~~~~~~~~  108 (109)
                      +|+.|+..+.|.+
T Consensus       100 al~~A~~~~~~~~  112 (112)
T 2coc_A          100 TLSTAAHSGPSSG  112 (112)
T ss_dssp             HHHHHHSCCSSCC
T ss_pred             HHHHHhcCCCCCC
Confidence            9999998887754

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=7.3e-23  Score=137.27  Aligned_cols=85  Identities=16%  Similarity=0.099  Sum_probs=71.9

Q ss_pred             ccccCCceEEeeCCeEEEEc----CCCCCcccEEEEcCCeEEeecCC-CCcccceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy4640          18 KSVGSDLDSIGSRNGLAVTD----RFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   92 (109)
Q Consensus        18 ~~~~~~~~~vL~~~~L~yyk----~~~d~~p~G~I~L~~~~V~~~~~-~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~   92 (109)
                      |.|-++ |+||++++||||+    ++.+.+|.|.|+|++|+|..+.+ .+..+++|+|++.+++ ++|+|+|||++||++
T Consensus        23 K~WKrR-wFVL~~~~LyYfk~~~~~~~~~~p~G~I~L~g~tV~~~~~~~~~~~~k~~F~~v~~~-~ty~~~Adseee~~~  100 (126)
T 1wi1_A           23 KRWKKR-FFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEG-DTVIFASDDEQDRIL  100 (126)
T ss_dssp             CSCEEE-EEEEEEEETTEEEEEECCSSSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEECSS-CEEEEECSSHHHHHH
T ss_pred             cccceE-EEEEeCCEEEEEEcccccccCCCCceEEECCCcEEEEecCCcccccCceEEEEecCC-ceEEEEcCCHHHHHH
Confidence            344443 7999999999999    99999999999999999986643 2334678999999876 679999999999999


Q ss_pred             HHHHHHHhhhhc
Q psy4640          93 WMNALSLASILQ  104 (109)
Q Consensus        93 Wi~aI~~a~~~~  104 (109)
                      ||+||..|+...
T Consensus       101 WikAi~~A~~~~  112 (126)
T 1wi1_A          101 WVQAMYRATGQS  112 (126)
T ss_dssp             HHHHHHHHHTCS
T ss_pred             HHHHHHHHhccc
Confidence            999999998654

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=1.7e-22  Score=135.70  Aligned_cols=84  Identities=24%  Similarity=0.204  Sum_probs=69.7

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCc-----------------------
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM-----------------------   77 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~-----------------------   77 (109)
                      +++-|+||++++|+|||++++.+|.|.|+|++|+|.....   .+++|+|+|.++..                       
T Consensus        23 WkrRWfVLk~~~L~yyk~~~~~~p~G~I~L~~~~v~~~~~---~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~   99 (130)
T 1v88_A           23 WTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPS---KKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPS   99 (130)
T ss_dssp             CEEEEEEEETTEEEEESCSSSCCCCEEEECSSCEECCCCT---TTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCS
T ss_pred             ceEEEEEEECCEEEEECCCCCCCceEEEEcCCCEEEECCC---CCCCeEEEEEcCCccccccccCCcccccccccccCCc
Confidence            4445899999999999999999999999999999854433   24569999987643                       


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHhhhhccCC
Q psy4640          78 RTYYFAADTRESMIQWMNALSLASILQNSS  107 (109)
Q Consensus        78 r~y~fsA~s~~e~~~Wi~aI~~a~~~~~~~  107 (109)
                      ++|+|+|+|++|+++||+||+.|+....++
T Consensus       100 ~~~~f~A~s~~e~~~Wi~ai~~a~~~~~~~  129 (130)
T 1v88_A          100 SYLIIRATSESDGRCWMDALELALKSGPSS  129 (130)
T ss_dssp             SCCEEECSSHHHHHHHHHHHHHHHTTTTTC
T ss_pred             eEEEEECCCHHHHHHHHHHHHHHHhcCCCC
Confidence            459999999999999999999998655443

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=99.88  E-value=4.1e-22  Score=133.07  Aligned_cols=80  Identities=15%  Similarity=0.130  Sum_probs=70.3

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCC-------ceEEEEEcCCHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-------MRTYYFAADTRESMIQW   93 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~-------~r~y~fsA~s~~e~~~W   93 (109)
                      +++-|+||+++||+||||+++++|.|+|+|+++.|..+++. ...++|+|+|.+++       +++|.|+|+|.+||++|
T Consensus        30 wk~rWFVLt~~~L~yyKd~~eke~~G~IpL~~~~vr~v~~~-~~~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~W  108 (125)
T 1dyn_A           30 SKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKG-FMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSW  108 (125)
T ss_dssp             SEEEEEEEESSEEEEESSTTCSCEEEEEECTTEEEEECCSC-SSSSCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHH
T ss_pred             ceeeEEEEeccceeeecCCcccccceEEECCCceEeccCCC-CCCCceEEEEECCCCccccccceEEEEeCCCHHHHHHH
Confidence            56679999999999999999999999999999999887653 23678999998765       45999999999999999


Q ss_pred             HHHHHHhh
Q psy4640          94 MNALSLAS  101 (109)
Q Consensus        94 i~aI~~a~  101 (109)
                      +++|.+|.
T Consensus       109 i~s~~ra~  116 (125)
T 1dyn_A          109 KASFLRAG  116 (125)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhCc
Confidence            99996664

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=99.87  E-value=3.3e-22  Score=130.43  Aligned_cols=86  Identities=15%  Similarity=0.091  Sum_probs=70.2

Q ss_pred             cccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHH
Q psy4640          19 SVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS   98 (109)
Q Consensus        19 ~~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~   98 (109)
                      +.+++.|+||++++|||||++++..|.|.|+|.++.+..+...+..+++|+|+|.+++.++|+|+|+|++||++||++|+
T Consensus        18 k~Wk~rwfvL~~~~L~~yk~~~~~~p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~   97 (112)
T 3cxb_B           18 EHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLC   97 (112)
T ss_dssp             CCCEEEEEEEETTEEEEESSSSCCSCSEEEETTC-CEEEEEECCCSSCTTEEEEEETTSCCEEEECSSHHHHHHHHHHHH
T ss_pred             CCceEEEEEEECCEEEEECCCCCCCccceEEecCCEEEeeeccCCCCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence            44455789999999999999999999999999877554111112246789999998878999999999999999999999


Q ss_pred             Hhhhhc
Q psy4640          99 LASILQ  104 (109)
Q Consensus        99 ~a~~~~  104 (109)
                      .|+...
T Consensus        98 ~~~~~~  103 (112)
T 3cxb_B           98 QAVSKG  103 (112)
T ss_dssp             HHHTCC
T ss_pred             HHhhcc
Confidence            988654

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=1.3e-21  Score=126.42  Aligned_cols=87  Identities=32%  Similarity=0.497  Sum_probs=75.4

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|.+|+|..+.+.+..+++|+|.|.+++.|+|+|+|+|++|+++||++|+.|+
T Consensus        29 k~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~  108 (117)
T 2d9y_A           29 NKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA  108 (117)
T ss_dssp             EEEEEEEETTEEEEESSTTCCSCCEEEECSSCEEEECCTTTTCCCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             eEEEEEECCCEEEEECCCCCCCcCCEEEeCCeEEEEcCccccCCCccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence            33479999999999999999999999999999987765544456789999987777999999999999999999999999


Q ss_pred             hhccCCC
Q psy4640         102 ILQNSST  108 (109)
Q Consensus       102 ~~~~~~~  108 (109)
                      ..+.+.+
T Consensus       109 ~~~~~p~  115 (117)
T 2d9y_A          109 RVQSGPS  115 (117)
T ss_dssp             CCTTCSS
T ss_pred             hhccCCC
Confidence            8775544

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.87  E-value=3.5e-21  Score=123.65  Aligned_cols=85  Identities=20%  Similarity=0.188  Sum_probs=73.2

Q ss_pred             ccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      .+++-|+||+++.|+||+++.+..|.|.|+|.+|++....+.  .+++++|+|.+++.|+|+|+|+|++|+++||++|+.
T Consensus        23 ~Wk~RwfvL~~~~L~yyk~~~~~~~~~~i~L~~~~~~~~~~~--~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~  100 (109)
T 1wgq_A           23 PWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDE--NSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQE  100 (109)
T ss_dssp             CCEEEEEEEETTEEEEESCTTCSSCSEEEECSSEEEEECCCS--SCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHH
T ss_pred             CceeEEEEEeCCEEEEECCCCcCccCceEECCCCEEEECCCC--CCCCcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHH
Confidence            334458999999999999999999999999999987665442  245799999988889999999999999999999999


Q ss_pred             hhhhccC
Q psy4640         100 ASILQNS  106 (109)
Q Consensus       100 a~~~~~~  106 (109)
                      |+....+
T Consensus       101 a~~~~~~  107 (109)
T 1wgq_A          101 GTVSGPS  107 (109)
T ss_dssp             HHSCCCC
T ss_pred             HhccCCC
Confidence            9877644

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.87  E-value=1.6e-21  Score=130.17  Aligned_cols=89  Identities=22%  Similarity=0.246  Sum_probs=70.8

Q ss_pred             ccccCCceEEee---CCeEEEEcC----CCCCcccEEEEcCC-eEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHH
Q psy4640          18 KSVGSDLDSIGS---RNGLAVTDR----FEEEKLLGSILLPS-YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES   89 (109)
Q Consensus        18 ~~~~~~~~~vL~---~~~L~yyk~----~~d~~p~G~I~L~~-~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e   89 (109)
                      |.+.++ |+||+   ++.||||++    +.+++|+|.|+|.. ++|..+.+.+..+++|||.|.++ .|+|||+|+|++|
T Consensus        30 k~WkrR-wFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~~~~~~~~F~i~t~-~r~y~l~A~s~~e  107 (126)
T 1v5p_A           30 GKFLRR-YFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINAL-SQRYFLQANDQKD  107 (126)
T ss_dssp             SCEEEE-EEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEECS-SCEEEEECSSHHH
T ss_pred             CCccce-EEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCccEEecCCcccCCCCCEEEEEECC-CEEEEEECCCHHH
Confidence            444443 79999   778999999    56789999999998 47877653333466899988654 5999999999999


Q ss_pred             HHHHHHHHHHhhhhccCCCC
Q psy4640          90 MIQWMNALSLASILQNSSTG  109 (109)
Q Consensus        90 ~~~Wi~aI~~a~~~~~~~~~  109 (109)
                      |++||+||+.|+..+ +.+|
T Consensus       108 ~~~Wi~al~~a~~~~-~~~~  126 (126)
T 1v5p_A          108 LKDWVEALNQASKSG-PSSG  126 (126)
T ss_dssp             HHHHHHHHHHTTTTS-SSCC
T ss_pred             HHHHHHHHHHHHhcC-CCCC
Confidence            999999999999765 4444

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=99.86  E-value=2.3e-21  Score=127.14  Aligned_cols=84  Identities=43%  Similarity=0.611  Sum_probs=73.4

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|.+|+|..+...+..+++|+|.|.+++.|+|+|+|+|++|+++||++|+.|+
T Consensus        39 k~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  118 (128)
T 2dkp_A           39 KKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAA  118 (128)
T ss_dssp             EEEEEEEETTEEEEESSTTCCSEEEEECGGGSEEEECCGGGCCSSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEeCCEEEEECCCCCcccceEEEcCceEEEEcCCcccCCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            33478999999999999999999999999999987765433346789999998877999999999999999999999998


Q ss_pred             hhcc
Q psy4640         102 ILQN  105 (109)
Q Consensus       102 ~~~~  105 (109)
                      ..+.
T Consensus       119 ~~~~  122 (128)
T 2dkp_A          119 LVQT  122 (128)
T ss_dssp             SCCC
T ss_pred             hccC
Confidence            8763

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=3.5e-21  Score=125.39  Aligned_cols=83  Identities=34%  Similarity=0.508  Sum_probs=72.0

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|.+|+|..+.+.+..+++++|.|.+++.|+|+|+|+|++|+++||++|+.|+
T Consensus        40 k~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  119 (122)
T 2yry_A           40 NKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA  119 (122)
T ss_dssp             EEEEEEEETTEEEEESSTTCCSCCEEEESTTCCCEECCTTCSCSSSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCEEEEECCCCCCCcccEEEcCCCEEEEcCccccCCcccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence            33479999999999999999999999999999887665444456789999987777999999999999999999999998


Q ss_pred             hhc
Q psy4640         102 ILQ  104 (109)
Q Consensus       102 ~~~  104 (109)
                      ..|
T Consensus       120 ~~q  122 (122)
T 2yry_A          120 RVQ  122 (122)
T ss_dssp             CCC
T ss_pred             hcC
Confidence            643

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=99.85  E-value=4.6e-21  Score=127.83  Aligned_cols=81  Identities=11%  Similarity=0.036  Sum_probs=68.2

Q ss_pred             cCCceEEeeCCeEEEEcCCC-----------CCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFE-----------EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES   89 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~-----------d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e   89 (109)
                      ++..|+||+++.|+|||++.           +..|.|.|+|.+|+|..+.+  ..+++|+|+|.+++.++|+|+|+|++|
T Consensus        34 Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~--~~kr~~~F~l~t~~~~~yl~qA~s~~e  111 (129)
T 2p0d_A           34 WGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRH--LSSRRNVLHIRTIPGHEFLLQSDHETE  111 (129)
T ss_dssp             CEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEECTT--SCSSSSEEEEECTTSCEEEEECSCHHH
T ss_pred             ceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEECCC--CCCCCcEEEEEcCCCCEEEEECCCHHH
Confidence            34457999999999999993           66899999999999877533  346789999998888999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q psy4640          90 MIQWMNALSLASIL  103 (109)
Q Consensus        90 ~~~Wi~aI~~a~~~  103 (109)
                      |++||+||+.|+..
T Consensus       112 ~~~Wi~aI~~~i~~  125 (129)
T 2p0d_A          112 LRAWHRALRTVIER  125 (129)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998753

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=99.85  E-value=7.7e-21  Score=123.89  Aligned_cols=85  Identities=40%  Similarity=0.520  Sum_probs=71.6

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|.+|+|..+.+....+++|+|.|.+++.|+|+|+|+|++|+++||++|+.|+
T Consensus        29 kkR~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  108 (123)
T 1upq_A           29 KRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS  108 (123)
T ss_dssp             EEEEEEEETTEEEEESSTTCCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEeCCEEEEECCCCCcccceEEECCCCEEEECCCCccCCCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHH
Confidence            33489999999999999999999999999999988765433345789999988877999999999999999999999998


Q ss_pred             hhccC
Q psy4640         102 ILQNS  106 (109)
Q Consensus       102 ~~~~~  106 (109)
                      .....
T Consensus       109 ~~~~~  113 (123)
T 1upq_A          109 RAEGD  113 (123)
T ss_dssp             C----
T ss_pred             hcccC
Confidence            76543

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.84  E-value=2.9e-20  Score=119.82  Aligned_cols=86  Identities=21%  Similarity=0.239  Sum_probs=71.8

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeC-------CceEEEEEcCCHHHHHHHH
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA-------NMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~-------~~r~y~fsA~s~~e~~~Wi   94 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|.+|+|..+.+.....++|+|+|.++       ..|+|+|+|+|++|+++||
T Consensus        25 k~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi  104 (118)
T 1v89_A           25 QQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWV  104 (118)
T ss_dssp             EEEEEEEETTEEEEESSSSCCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHH
T ss_pred             cEEEEEEECCEEEEEeCCCCCCceEEEECCCCEEEEcCcCcccCCcceEEEECCccccccCCCcEEEEECCCHHHHHHHH
Confidence            334899999999999999999999999999999865543222356899999873       6799999999999999999


Q ss_pred             HHHHHhhhhccCC
Q psy4640          95 NALSLASILQNSS  107 (109)
Q Consensus        95 ~aI~~a~~~~~~~  107 (109)
                      ++|+.|+....+.
T Consensus       105 ~al~~~~~~~~~s  117 (118)
T 1v89_A          105 KFLRRVAGSGPSS  117 (118)
T ss_dssp             HHHHHHHHCCSCC
T ss_pred             HHHHHHHccCCCC
Confidence            9999998755443

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=99.82  E-value=6.1e-20  Score=121.63  Aligned_cols=82  Identities=15%  Similarity=0.077  Sum_probs=70.0

Q ss_pred             ccCCceEEeeCCeEEEEcCCCCC------------cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEEE------------KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTR   87 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d~------------~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~   87 (109)
                      -++..|+||+++.|+|||++.+.            .|.+.|+|.+|.|..+. .+..+++|+|+|.+++.++|+|+|+|+
T Consensus        30 ~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~-~d~~krk~vF~l~t~~~~~ylfqA~s~  108 (124)
T 3pp2_A           30 HWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAP-KDKSSRKNVLELRSRDGSEYLIQHDSE  108 (124)
T ss_dssp             CCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECC-GGGCSSSSEEEEECTTSCEEEEECSCH
T ss_pred             CceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEecc-cccCCCceEEEEECCCCCEEEEECCCH
Confidence            34456899999999999998764            58899999999988764 123478999999988889999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy4640          88 ESMIQWMNALSLASI  102 (109)
Q Consensus        88 ~e~~~Wi~aI~~a~~  102 (109)
                      +||++||++|+.|++
T Consensus       109 ~e~~~Wi~aI~~aI~  123 (124)
T 3pp2_A          109 AIISTWHKAIAQGIQ  123 (124)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999875

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=99.82  E-value=9.4e-20  Score=122.19  Aligned_cols=83  Identities=12%  Similarity=0.036  Sum_probs=70.6

Q ss_pred             cCCceEEeeCCeEEEEcCCC---------CCcccEEEEcCCeEEeecCCCCcccceeeEEEeeC-CceEEEEEcCCHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFE---------EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA-NMRTYYFAADTRESM   90 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~---------d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~-~~r~y~fsA~s~~e~   90 (109)
                      +++.|+||++++||||+...         +.+|.|.|+|+|+.|+.++.   .+++++|.|.++ .+..|.|+|+|++++
T Consensus        24 Wkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~~~e~---~~~~~~F~L~~~~~G~~Y~fqA~s~~~~  100 (126)
T 2dtc_A           24 WTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDD---PEHPDIFQLNNPDKGNVYKFQTGSRFHA  100 (126)
T ss_dssp             CEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEECCCC---TTSTTEEEEECTTSCSEEEEECSSHHHH
T ss_pred             cccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEEEecCC---CCCCCEEEEeeCCCCCEEEEeCCCHHHH
Confidence            45578999999999999764         66899999999999984333   467899999876 568899999999999


Q ss_pred             HHHHHHHHHhhhhccC
Q psy4640          91 IQWMNALSLASILQNS  106 (109)
Q Consensus        91 ~~Wi~aI~~a~~~~~~  106 (109)
                      ++||+||+.|+....+
T Consensus       101 ~~W~~ai~~a~~~~~~  116 (126)
T 2dtc_A          101 ILWHKHLDDACKSSRP  116 (126)
T ss_dssp             HHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999999976543

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=99.82  E-value=1e-19  Score=115.46  Aligned_cols=82  Identities=16%  Similarity=0.220  Sum_probs=70.3

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCC-CCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~-~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|.+++|..++. ....+++++|.|.+++.|+|+|+|+|++|+++||++|+.|
T Consensus        24 k~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~  103 (108)
T 1u5d_A           24 QKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFL  103 (108)
T ss_dssp             EEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             eeeEEEEeCCEEEEecCCCCCCCCEEEEecceEEEeCCccccccCCcceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence            335899999999999999999999999999999876532 1223668999999887799999999999999999999998


Q ss_pred             hhh
Q psy4640         101 SIL  103 (109)
Q Consensus       101 ~~~  103 (109)
                      +..
T Consensus       104 i~~  106 (108)
T 1u5d_A          104 LKD  106 (108)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            754

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=99.82  E-value=2.5e-20  Score=123.40  Aligned_cols=83  Identities=18%  Similarity=0.230  Sum_probs=67.0

Q ss_pred             cCCceEEeeCCeEEEEcCCCC---------CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCC--ceEEEEEcCCHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEE---------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN--MRTYYFAADTRES   89 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d---------~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~--~r~y~fsA~s~~e   89 (109)
                      +++-|+||++++|+||+++.+         ..+.|.|+|.+|+|..+.+ +..+++|+|+|.+++  .++|+|+|+|.+|
T Consensus        28 Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~-~~~~k~~~F~I~~~~~~~~~~~~~A~s~ee  106 (124)
T 2w2x_D           28 WTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQ-GKNQKSFVFILEPKQQGDPPVEFATDKVEE  106 (124)
T ss_dssp             EEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTT-CBTTBSEEEEEEECC--CCCEEEEECCCHH
T ss_pred             ceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEccC-CcCCCCEEEEEECCCCCCceEEEEECCHHH
Confidence            344589999999999997532         3458999999999887654 234678999998765  4789999999999


Q ss_pred             HHHHHHHHHHhhhhc
Q psy4640          90 MIQWMNALSLASILQ  104 (109)
Q Consensus        90 ~~~Wi~aI~~a~~~~  104 (109)
                      +++||+||+.|+...
T Consensus       107 ~~~Wi~ai~~a~~~~  121 (124)
T 2w2x_D          107 LFEWFQSIREITWKI  121 (124)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988654

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.81  E-value=2.8e-19  Score=115.23  Aligned_cols=82  Identities=17%  Similarity=0.189  Sum_probs=70.1

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|.++++...... ..+++++|.|.+++.|+|+|+|+|++|+++||++|+.|+
T Consensus        22 k~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~-~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~  100 (113)
T 1pls_A           22 KPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQD-FGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAI  100 (113)
T ss_dssp             EEEEEEEETTEEEEESSTTCSSCSEEEESSSCCEESSCCS-SCCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEECCEEEEEeCCCCCCcceEEEcCCCEEEEecCC-CCCCccEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence            3348999999999999999999999999999986542221 236789999998877999999999999999999999998


Q ss_pred             hhc
Q psy4640         102 ILQ  104 (109)
Q Consensus       102 ~~~  104 (109)
                      ...
T Consensus       101 ~~~  103 (113)
T 1pls_A          101 KCI  103 (113)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            665

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.81  E-value=1.2e-19  Score=124.58  Aligned_cols=84  Identities=7%  Similarity=-0.063  Sum_probs=68.8

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      +++-|+||++++||||+++.+..+.|.|+|.++++....... .++.++|+|.+++ |+|+|+|+|++||++||+||+.+
T Consensus        34 WkrRWFvLk~~~L~Yyk~~~d~~~~g~I~L~~~~~~~~~~~~-~~~~~~F~I~t~~-r~~~f~A~s~ee~~eWi~aI~~v  111 (149)
T 1x1f_A           34 YEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNST-EKNCAKFTLVLPK-EEVQLKTENTESGEEWRGFILTV  111 (149)
T ss_dssp             CEEEEEEEETTEEEEESCSSCSSCSEECCCSSCCEEEECCCT-TSCCCEEEEECSS-CCEEEECSSHHHHHHHHHHHHHH
T ss_pred             ceeEEEEEcCCEEEEEeCCCccccCcEEECCCceEEeeccCC-CCcCcEEEEEcCC-CEEEEEcCCHHHHHHHHHHHHHH
Confidence            344589999999999999999999999999998765322211 2356899998775 89999999999999999999998


Q ss_pred             hhhccC
Q psy4640         101 SILQNS  106 (109)
Q Consensus       101 ~~~~~~  106 (109)
                      +....|
T Consensus       112 ~~~~~p  117 (149)
T 1x1f_A          112 TELSVP  117 (149)
T ss_dssp             HHSSCC
T ss_pred             HcccCC
Confidence            875544

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.81  E-value=1e-19  Score=119.28  Aligned_cols=85  Identities=19%  Similarity=0.153  Sum_probs=69.4

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCc------ccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEK------LLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~------p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi   94 (109)
                      +++.|+||+++.|+||+++.+..      +...|+|.+|.+..+.+  ..+++|+|+|.+++.++|+|+|+|++||++||
T Consensus        32 Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~r~~~F~i~~~~~~~~~f~A~s~~e~~~Wi  109 (123)
T 1wjm_A           32 WQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFD--YRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWL  109 (123)
T ss_dssp             CEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTT--CSSCSSEEEEECSSSCEEEEECSSHHHHHHHH
T ss_pred             ccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcEEeeccc--ccCCCCEEEEEEcCCcEEEEECCCHHHHHHHH
Confidence            44468999999999999886532      34578888888876544  24678999999887799999999999999999


Q ss_pred             HHHHHhhhhccCC
Q psy4640          95 NALSLASILQNSS  107 (109)
Q Consensus        95 ~aI~~a~~~~~~~  107 (109)
                      +||+.|+....+.
T Consensus       110 ~ai~~~~~~~~~~  122 (123)
T 1wjm_A          110 RVVNAAIASGPSS  122 (123)
T ss_dssp             HHHHHHHHHCCCC
T ss_pred             HHHHHHHhccCCC
Confidence            9999998765554

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=99.81  E-value=2.3e-19  Score=119.08  Aligned_cols=81  Identities=19%  Similarity=0.199  Sum_probs=64.7

Q ss_pred             CCceEEeeCCeEEEEcCCC---CCcccEEEEcCCeEEeecCCCCc------ccceeeEEEeeCC------ceEEEEEcCC
Q psy4640          22 SDLDSIGSRNGLAVTDRFE---EEKLLGSILLPSYKISPCSSDDK------VFRKFSFKAEHAN------MRTYYFAADT   86 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~---d~~p~G~I~L~~~~V~~~~~~~~------~~k~~~F~i~~~~------~r~y~fsA~s   86 (109)
                      ++-|+||++++|+|||++.   +..|.|+|+|++|+|.....++.      ..+.+.|.|...+      .++|+|+|+|
T Consensus        23 ~~rwfVL~~~~L~yyK~~~~~~d~~P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s  102 (120)
T 4a6h_A           23 SKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADS  102 (120)
T ss_dssp             EEEEEEECSSEEEEESSCCTTTCCSCSEEEEGGGEEEEEECCCCC---------CCEEEEEESSSSSSCTTCEEEEECSS
T ss_pred             ccEEEEEeCCEEEEEcCCCcCcCCCceEEEECCCCEEEEcccccccccccccCCCcEEEEEeCCCCcccCceEEEEEcCC
Confidence            3348999999999999875   66799999999999987554321      0156788887654      3699999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy4640          87 RESMIQWMNALSLASI  102 (109)
Q Consensus        87 ~~e~~~Wi~aI~~a~~  102 (109)
                      .+||++||++|+.++.
T Consensus       103 ~~e~~~Wv~aI~~~~~  118 (120)
T 4a6h_A          103 YESMMSWFDNLKILTS  118 (120)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999863

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=99.80  E-value=3.4e-19  Score=116.24  Aligned_cols=80  Identities=16%  Similarity=0.128  Sum_probs=68.9

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCC---------------------ceEE
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN---------------------MRTY   80 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~---------------------~r~y   80 (109)
                      ++-|+||+++.|+||+++.+.+|.|.|+|.+|+|..+.+   .+++++|.|.+++                     .|+|
T Consensus        22 k~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~---~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~   98 (127)
T 1fgy_A           22 KRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLD---PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVY   98 (127)
T ss_dssp             EEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECC---SSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEE
T ss_pred             EEEEEEEECCEEEEeCCCCCCCcceEEECCceEEEEccC---CCCCceEEEecCCccccccccccccCCcceecCCceEE
Confidence            335899999999999999999999999999998876654   2568999998653                     3799


Q ss_pred             EEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640          81 YFAADTRESMIQWMNALSLASILQ  104 (109)
Q Consensus        81 ~fsA~s~~e~~~Wi~aI~~a~~~~  104 (109)
                      +|+|+|++|+++||++|+.|+...
T Consensus        99 ~l~a~s~~e~~~Wi~al~~~i~~~  122 (127)
T 1fgy_A           99 RISAPSPEEKEEWMKSIKASISRD  122 (127)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             EEECCCHHHHHHHHHHHHHHhccC
Confidence            999999999999999999987543

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=99.80  E-value=3.7e-19  Score=113.48  Aligned_cols=80  Identities=24%  Similarity=0.290  Sum_probs=66.5

Q ss_pred             CCceEEeeCC--eEEEEcCCCCCcccEEEEcCCeEEeecCCC-C--cccceeeEEEeeCCceEEEEEcCCHHHHHHHHHH
Q psy4640          22 SDLDSIGSRN--GLAVTDRFEEEKLLGSILLPSYKISPCSSD-D--KVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA   96 (109)
Q Consensus        22 ~~~~~vL~~~--~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~-~--~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~a   96 (109)
                      ++-|+||+++  .|+||+++.+..|.|.|+|.+|+|..+... +  ..+++++|.|.+++.++|+|+|+|++|+++||+|
T Consensus        24 k~R~fvL~~~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~a  103 (109)
T 2i5f_A           24 KVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKA  103 (109)
T ss_dssp             EEEEEEEETTTTEEEEECTTSCSSCSEEEECTTCEEEEECC--------CCSEEEEECTTCCEEEEECSSHHHHHHHHHH
T ss_pred             eEEEEEEeCCCcEEEEECCCCCCCccEEEECCCCEEEEccCCcccccCCCceEEEEEeCCCCEEEEEcCCHHHHHHHHHH
Confidence            3348999986  999999999999999999999987654331 1  1236899999988878999999999999999999


Q ss_pred             HHHhh
Q psy4640          97 LSLAS  101 (109)
Q Consensus        97 I~~a~  101 (109)
                      |+.|+
T Consensus       104 i~~~~  108 (109)
T 2i5f_A          104 IQMAS  108 (109)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99986

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.80  E-value=5e-19  Score=113.60  Aligned_cols=80  Identities=18%  Similarity=0.108  Sum_probs=67.0

Q ss_pred             CCceEEeeCCeEEEEcCCCC-CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEE-EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d-~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      ++-|+||+++.|+||+++.+ ..+.+.|+|.+|.|....+   .+++|+|.|.+++.|+|+|+|+|++|+++||+||+.|
T Consensus        23 k~RwfvL~~~~L~yyk~~~~~~~~~~~i~l~~~~v~~~~~---~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~   99 (107)
T 2cof_A           23 KSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPS---PDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSE   99 (107)
T ss_dssp             EEEEEEECSSCEEEECSSTTCSEEEEEECTTTCEEECCCB---TTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEECCEEEEEeCCcccCCCeeEEeccceEEEECCC---CCCCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence            33479999999999998864 5677788888998876543   3678999999887899999999999999999999998


Q ss_pred             hhhc
Q psy4640         101 SILQ  104 (109)
Q Consensus       101 ~~~~  104 (109)
                      +...
T Consensus       100 ~~~~  103 (107)
T 2cof_A          100 SGSG  103 (107)
T ss_dssp             SSCS
T ss_pred             HcCC
Confidence            7544

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=99.79  E-value=6.2e-19  Score=115.94  Aligned_cols=82  Identities=23%  Similarity=0.263  Sum_probs=69.4

Q ss_pred             CceEEeeCC--eEEEEcCCCCCcccEEEEcCCeEEeecCCC-C--cccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHH
Q psy4640          23 DLDSIGSRN--GLAVTDRFEEEKLLGSILLPSYKISPCSSD-D--KVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL   97 (109)
Q Consensus        23 ~~~~vL~~~--~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~-~--~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI   97 (109)
                      +-|+||+++  +|+||+++.+..|.|.|+|.+|+|..+... +  ..+++++|.|.+++.|+|+|+|+|++|+++||+||
T Consensus        36 ~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al  115 (129)
T 1x05_A           36 VRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAI  115 (129)
T ss_dssp             EEEEEEEETTTEEEEECSSCCSSCSEEEECTTCEEEECCCCCCSSSCSSCSEEEEECTTCCCCEEECSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCEEEEECCCCCCcceeEEEccCCEEEEccCCccccccCCCeEEEEEcCCCCEEEEECCCHHHHHHHHHHH
Confidence            347899976  999999999999999999999988765332 1  12368999999887789999999999999999999


Q ss_pred             HHhhhhc
Q psy4640          98 SLASILQ  104 (109)
Q Consensus        98 ~~a~~~~  104 (109)
                      +.|+...
T Consensus       116 ~~~~~~~  122 (129)
T 1x05_A          116 QMASRTG  122 (129)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHcc
Confidence            9998655

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=99.79  E-value=7.1e-19  Score=111.61  Aligned_cols=76  Identities=16%  Similarity=0.137  Sum_probs=65.7

Q ss_pred             ceEEeeCCeEEEEcCCCC--CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          24 LDSIGSRNGLAVTDRFEE--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d--~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      -|+||+++.|+||+++.+  ..|.|.|+|.+|.|...+.     ++++|.|.+++.|+|+|+|+|++|+++||++|+.|+
T Consensus        18 R~fvL~~~~L~Yy~~~~~~~~~~~g~i~L~~~~v~~~~~-----~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~   92 (103)
T 3rcp_A           18 RWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSA-----DNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSK   92 (103)
T ss_dssp             EEEEEETTEEEEESSCC---CCCSCEEEGGGCEEECCTT-----CSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTTS
T ss_pred             eEEEEECCEEEEEecCCcccCCcccEEEeeeeEEEEcCC-----CCceEEEEeCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence            379999999999999985  4699999999999876433     367999998878999999999999999999999988


Q ss_pred             hhc
Q psy4640         102 ILQ  104 (109)
Q Consensus       102 ~~~  104 (109)
                      ...
T Consensus        93 ~~~   95 (103)
T 3rcp_A           93 ASL   95 (103)
T ss_dssp             CCC
T ss_pred             Hhc
Confidence            654

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=4.4e-19  Score=116.04  Aligned_cols=78  Identities=17%  Similarity=0.137  Sum_probs=67.2

Q ss_pred             CCceEEeeCC--eEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          22 SDLDSIGSRN--GLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        22 ~~~~~vL~~~--~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      ++-|+||+++  .|+||+++.+..|.|.|+|.++++.....    .++++|.|.++ .|+|+|+|+|++|+++||++|+.
T Consensus        27 kkRwfvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~~~~~~----~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~  101 (119)
T 2dhk_A           27 KSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDCKAD----AEEGIFEIKTP-SRVITLKAATKQAMLYWLQQLQM  101 (119)
T ss_dssp             EEEEEEEETTTTEEEEESSTTCCSCSEEEEGGGCEEEECTT----GGGCEEEEECS-SCCEEEECSSHHHHHHHHHHHHH
T ss_pred             eeEEEEEECCccEEEEECCCCCcccccEEECCCCEEEecCC----CCCCEEEEEeC-CcEEEEECCCHHHHHHHHHHHHH
Confidence            3347999999  99999999999999999999988654322    45789999877 59999999999999999999999


Q ss_pred             hhhhc
Q psy4640         100 ASILQ  104 (109)
Q Consensus       100 a~~~~  104 (109)
                      |+...
T Consensus       102 ~~~~~  106 (119)
T 2dhk_A          102 KRWEF  106 (119)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98654

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=7.6e-19  Score=118.92  Aligned_cols=83  Identities=17%  Similarity=0.159  Sum_probs=70.0

Q ss_pred             ccCCceEEeeCCeEEEEcCCCCC--cccEEEEcCCeEEeecCCCCcccceeeEEEeeC---CceEEEEEcCCHHHHHHHH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEEE--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA---NMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d~--~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~---~~r~y~fsA~s~~e~~~Wi   94 (109)
                      ..++-|+||+++.|+|||++.+.  +|.|.|+|+||+|++....  ..++|.|+|..|   +.|+|+|.|||++++.+||
T Consensus        27 ~~KrrWFvlk~~~L~YyK~kee~~~ePig~I~L~gceV~pd~~~--~~~kf~ikl~iPs~~g~r~y~l~cdsEeqy~~WM  104 (137)
T 2ys3_A           27 GYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNV--SGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWM  104 (137)
T ss_dssp             SSCCCEEEECSSCEEEESSTTTTTSCCSCCBCTTTCEEEECCBG--GGTBEEEEEEEECSSSEEEEEEEESSHHHHHHHH
T ss_pred             cceeEEEEEeCCEEEEECCchhccCCCceEEECCCCEEeccccc--cCCceEEEEEccCCCCceEEEEECCCHHHHHHHH
Confidence            33456899999999999998886  8999999999998765321  356899888654   5699999999999999999


Q ss_pred             HHHHHhhhhc
Q psy4640          95 NALSLASILQ  104 (109)
Q Consensus        95 ~aI~~a~~~~  104 (109)
                      +|++.|++..
T Consensus       105 aA~rlAskgk  114 (137)
T 2ys3_A          105 AGCRLASKGR  114 (137)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHhccCc
Confidence            9999999764

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=99.79  E-value=1.1e-18  Score=117.67  Aligned_cols=83  Identities=12%  Similarity=0.139  Sum_probs=69.8

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCC-CcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSD-DKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~-~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|.+++|..+... ...+++++|.|.+++.|+|+|+|+|++|+++||++|+.|
T Consensus        38 kkR~fvL~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~  117 (148)
T 1u5f_A           38 QKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI  117 (148)
T ss_dssp             EEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             eeEEEEEECCEEEEEcCCCCcccceEEEcCCcEEEECCCcccCCCCccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence            3347999999999999999999999999999988765431 123567999999887799999999999999999999999


Q ss_pred             hhhc
Q psy4640         101 SILQ  104 (109)
Q Consensus       101 ~~~~  104 (109)
                      +...
T Consensus       118 i~~~  121 (148)
T 1u5f_A          118 LQDL  121 (148)
T ss_dssp             CC--
T ss_pred             HHHh
Confidence            8654

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=99.78  E-value=1.2e-19  Score=119.19  Aligned_cols=82  Identities=17%  Similarity=0.116  Sum_probs=68.6

Q ss_pred             cccCCceEEeeCCeEEEEcCCCCCcc--------cEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHH
Q psy4640          19 SVGSDLDSIGSRNGLAVTDRFEEEKL--------LGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESM   90 (109)
Q Consensus        19 ~~~~~~~~vL~~~~L~yyk~~~d~~p--------~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~   90 (109)
                      .-++..|+||+++.|+||+++.+..+        .+.|+|.+|.|..+.+  ..+++|+|+|.+++.++|+|+|+|++||
T Consensus        30 ~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~v~~~~d--~~kr~~~F~l~t~~~~~~lfqA~s~~e~  107 (122)
T 1dro_A           30 RSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASD--YTKKKHVLRVKLANGALFLLQAHDDTEM  107 (122)
T ss_dssp             CCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCS--SSSSTTEEEEECSSSCEEEEECSSSHHH
T ss_pred             CCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCEEEeCCC--CCCCCeEEEEEEcCCCEEEEECCCHHHH
Confidence            34455689999999999999987654        4789999998776543  3467899999977779999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy4640          91 IQWMNALSLASI  102 (109)
Q Consensus        91 ~~Wi~aI~~a~~  102 (109)
                      ++||+||+.|+.
T Consensus       108 ~~Wi~ai~~~i~  119 (122)
T 1dro_A          108 SQWVTSLKAQSD  119 (122)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999999999875

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=99.78  E-value=1.1e-18  Score=113.74  Aligned_cols=83  Identities=25%  Similarity=0.313  Sum_probs=69.2

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      ++-|+||+++.|+||+++.+.+|.|.|+|.++. |..+...+...++++|.|.++ .|+|+|+|+|++|+++||++|+.|
T Consensus        31 k~R~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~-~r~~~l~a~s~~e~~~W~~al~~~  109 (125)
T 1eaz_A           31 KRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTT-SRTFYVQADSPEEMHSWIKAVSGA  109 (125)
T ss_dssp             EEEEEEECSSEEEEESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCEEEEEcCCCCCcceeEEEcccceEEeeccccccCCcCCEEEEEeC-CcEEEEEcCCHHHHHHHHHHHHHH
Confidence            334799999999999999999999999999885 555433223356899999876 489999999999999999999999


Q ss_pred             hhhcc
Q psy4640         101 SILQN  105 (109)
Q Consensus       101 ~~~~~  105 (109)
                      +....
T Consensus       110 i~~~~  114 (125)
T 1eaz_A          110 IVAQR  114 (125)
T ss_dssp             HHHTC
T ss_pred             HHhcc
Confidence            87653

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.78  E-value=1.1e-18  Score=117.64  Aligned_cols=78  Identities=21%  Similarity=0.210  Sum_probs=68.3

Q ss_pred             CCceEEeeCC-----eEEEEcCCC-CCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640          22 SDLDSIGSRN-----GLAVTDRFE-EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        22 ~~~~~vL~~~-----~L~yyk~~~-d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~   95 (109)
                      ++-|+||+++     .|+||+++. +..|.|.|+|.+|++....+   .+++|+|.|.+++.|+|+|+|+|++|+++||.
T Consensus        41 k~RwfvL~~~~~g~~~L~yy~~~~~~~~~~g~I~L~~~~~~~~~~---~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~  117 (150)
T 1wg7_A           41 KRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNN---KVRRFAFELKMQDKSSYLLAADSEVEMEEWIT  117 (150)
T ss_dssp             EEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEECCCC---SSCTTEEEEECSSSCEEEEECSSHHHHHHHHH
T ss_pred             eEEEEEEecCCCCceEEEEECCCCCCCCcCcEEecccCEEEecCC---CCCceEEEEEeCCCcEEEEEeCCHHHHHHHHH
Confidence            4447999997     999999988 88999999999998776543   35689999998877999999999999999999


Q ss_pred             HHHHhhh
Q psy4640          96 ALSLASI  102 (109)
Q Consensus        96 aI~~a~~  102 (109)
                      +|+.|+.
T Consensus       118 al~~ai~  124 (150)
T 1wg7_A          118 ILNKILQ  124 (150)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=99.78  E-value=1.3e-18  Score=110.44  Aligned_cols=79  Identities=16%  Similarity=0.154  Sum_probs=65.2

Q ss_pred             ccCCceEEeeCCeEEEEcCCCC----C--cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEE----E--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW   93 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d----~--~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~W   93 (109)
                      .+++-|+||+++.|+||+++.+    .  .+.+.|+|.++.|..+.+  ..+++|+|+|.+++.|+|+|+|+|++||++|
T Consensus        22 ~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~~~~~F~i~~~~~~~~~~~A~s~~e~~~W   99 (106)
T 1btn_A           22 SWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALD--YKKKKHVFKLRLSDGNEYLFQAKDDEEMNTW   99 (106)
T ss_dssp             CCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSS--CCSSSSEEEEECTTSCEEEEECSSHHHHHHH
T ss_pred             ChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEEccc--ccCCccEEEEEecCCCEEEEECCCHHHHHHH
Confidence            3444689999999999998863    2  367789999988766543  2467899999987779999999999999999


Q ss_pred             HHHHHHh
Q psy4640          94 MNALSLA  100 (109)
Q Consensus        94 i~aI~~a  100 (109)
                      |+||+.|
T Consensus       100 i~ai~~A  106 (106)
T 1btn_A          100 IQAISSA  106 (106)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9999976

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=99.77  E-value=2.5e-18  Score=112.57  Aligned_cols=77  Identities=18%  Similarity=0.069  Sum_probs=66.5

Q ss_pred             CceEEeeCCeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          23 DLDSIGSRNGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        23 ~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      +-|+||+++.|+||+++.+..|.|.|+|.+|. |.....   .+++++|.|.+++ |+|+|+|+|++|+++||++|+.|+
T Consensus        36 ~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~---~~~~~~F~i~~~~-r~~~l~a~s~~e~~~Wi~al~~~i  111 (126)
T 1fao_A           36 TRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYS---QERVNCFCLVFPF-RTFYLCAKTGVEADEWIKILRWKL  111 (126)
T ss_dssp             EEEEEEETTEEEEESSTTCSSCSEEEEGGGCCEEEEECS---SSSSSEEEEEETT-EEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCEEEEeCCCCCCCceeEEEccceEEEEeccc---CCCCCEEEEEeCC-cEEEEECCCHHHHHHHHHHHHHHH
Confidence            34799999999999999999999999999997 444322   3568999999875 999999999999999999999987


Q ss_pred             hh
Q psy4640         102 IL  103 (109)
Q Consensus       102 ~~  103 (109)
                      ..
T Consensus       112 ~~  113 (126)
T 1fao_A          112 SQ  113 (126)
T ss_dssp             HT
T ss_pred             HH
Confidence            55

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.77  E-value=3.3e-18  Score=110.27  Aligned_cols=82  Identities=18%  Similarity=0.164  Sum_probs=66.1

Q ss_pred             CCceEEee--CCeEEEEcCCCCCcccEEEEcCCeEEee-cCCC----CcccceeeEEEeeCCceEEEEEcCCHHHHHHHH
Q psy4640          22 SDLDSIGS--RNGLAVTDRFEEEKLLGSILLPSYKISP-CSSD----DKVFRKFSFKAEHANMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        22 ~~~~~vL~--~~~L~yyk~~~d~~p~G~I~L~~~~V~~-~~~~----~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi   94 (109)
                      ++-|+||+  ++.|+||+++.+..|.|.|+|.++.+.. ..+.    +...++++|.|.++ .|+|+|+|+|++|+++||
T Consensus        25 k~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi  103 (117)
T 1v5u_A           25 KARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTT-RRVYNFCAQDVPSAQQWV  103 (117)
T ss_dssp             EEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEES-SCEEEEECSSHHHHHHHH
T ss_pred             eeeEEEEECCCCEEEEeecCCCCccceEEEccCcEEEeecCccccccccCCCCeEEEEECC-CceEEEECCCHHHHHHHH
Confidence            33479999  8899999999999999999999987433 2211    11245689999766 489999999999999999


Q ss_pred             HHHHHhhhhc
Q psy4640          95 NALSLASILQ  104 (109)
Q Consensus        95 ~aI~~a~~~~  104 (109)
                      ++|+.|+...
T Consensus       104 ~al~~~i~~~  113 (117)
T 1v5u_A          104 DRIQSCLSSG  113 (117)
T ss_dssp             HHHHTTCCCC
T ss_pred             HHHHHHhccC
Confidence            9999987543

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.77  E-value=1.8e-18  Score=114.95  Aligned_cols=81  Identities=14%  Similarity=0.046  Sum_probs=65.3

Q ss_pred             CceEEe-eCCeEEEEcCCCCCcccEEEEcC-Ce-EEee------cCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHH
Q psy4640          23 DLDSIG-SRNGLAVTDRFEEEKLLGSILLP-SY-KISP------CSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW   93 (109)
Q Consensus        23 ~~~~vL-~~~~L~yyk~~~d~~p~G~I~L~-~~-~V~~------~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~W   93 (109)
                      +-|+|| ++++|+||+++.+..+.|.|.|. .+ .|..      +...+..+++++|.|.+++.|+|+|+|+|++||++|
T Consensus        26 kRwFVL~~~~~L~Yyk~~~~~~~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~W  105 (130)
T 2d9v_A           26 RNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAW  105 (130)
T ss_dssp             EEEEEEETTTEEEEESSSSTTSEEEEEECTTTEEEEEEGGGCSSCCCCSSCCTTTEEEEEETTSCEEEEECSSHHHHHHH
T ss_pred             eeEEEEccCCEEEEEeCCCCCCcCceEecccceeEEeccccccccCCCCCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHH
Confidence            348999 89999999999988999999886 44 2321      222223356799999987779999999999999999


Q ss_pred             HHHHHHhhhh
Q psy4640          94 MNALSLASIL  103 (109)
Q Consensus        94 i~aI~~a~~~  103 (109)
                      |+||+.|+..
T Consensus       106 i~al~~a~~~  115 (130)
T 2d9v_A          106 KTALMEANST  115 (130)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHcC
Confidence            9999998754

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=3e-18  Score=110.15  Aligned_cols=80  Identities=15%  Similarity=0.146  Sum_probs=67.8

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCe-EEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~-~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|.++ .|..+++.  ..++++|.|.+++ |+|+|+|+|++|+++||++|+.|
T Consensus        25 k~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~--~~~~~~F~i~~~~-r~~~l~a~s~~e~~~Wi~ai~~~  101 (115)
T 2dn6_A           25 TERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDK--DGKKCLFLVKCFD-KTFEISASDKKKKQEWIQAIHST  101 (115)
T ss_dssp             EEEEEEECSSCEEEESSTTCSSEEEEECCCTTCEEEEECCC--TTCCSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEeEEEEECCEEEEeCCCCCcccCcEEEecCcEEEEECCCC--CCCeeEEEEEeCC-CEEEEEcCCHHHHHHHHHHHHHH
Confidence            33489999999999999999999999999875 56665442  2567999998764 89999999999999999999999


Q ss_pred             hhhc
Q psy4640         101 SILQ  104 (109)
Q Consensus       101 ~~~~  104 (109)
                      +...
T Consensus       102 ~~~~  105 (115)
T 2dn6_A          102 IHLL  105 (115)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8654

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=99.77  E-value=1.2e-18  Score=112.01  Aligned_cols=80  Identities=14%  Similarity=0.136  Sum_probs=64.5

Q ss_pred             CceEEe-eCCeEEEEcCCCCCcccEEEEcCCeEEe-----ecC---CCCcccceeeEEEeeCCceEEEEEcCCHHHHHHH
Q psy4640          23 DLDSIG-SRNGLAVTDRFEEEKLLGSILLPSYKIS-----PCS---SDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW   93 (109)
Q Consensus        23 ~~~~vL-~~~~L~yyk~~~d~~p~G~I~L~~~~V~-----~~~---~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~W   93 (109)
                      +-|+|| +++.|+||+++.+.+|.|.|+|....|.     .+.   ..+...++++|.|.+++.|+|+|+|+|++|+++|
T Consensus        23 kR~fvL~~~~~L~yyk~~~~~~~~g~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~W  102 (112)
T 3aj4_A           23 KNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAW  102 (112)
T ss_dssp             EEEEEECTTSEEEEESSTTCCSEEEEEEHHHHEEEEEEGGGCCSCCCSTTCCGGGEEEEEETTSCEEEEECSSHHHHHHH
T ss_pred             ceEEEEeeCCEEEEEcCCCCCCCCccccccccceeecccccccccCCCCCCCcCcEEEEEecCCcEEEEEeCCHHHHHHH
Confidence            347999 8999999999999999999999764432     111   2222244789999888789999999999999999


Q ss_pred             HHHHHHhhh
Q psy4640          94 MNALSLASI  102 (109)
Q Consensus        94 i~aI~~a~~  102 (109)
                      |+||+.|..
T Consensus       103 i~al~~a~~  111 (112)
T 3aj4_A          103 KFTLQDSRT  111 (112)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999999863

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=99.77  E-value=2.3e-18  Score=127.33  Aligned_cols=81  Identities=10%  Similarity=0.124  Sum_probs=68.2

Q ss_pred             cCCceEEeeCCeEEEEcCC------CCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRF------EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~------~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi   94 (109)
                      |++.|+||+++.|+|||++      .+..|.|.|+|.+|.|..+.+.  .+++|+|.|.+++.++|+|+|+|++||++||
T Consensus        39 WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~--~kk~~~F~I~t~~~r~y~f~A~s~ee~~~Wi  116 (263)
T 3a8p_A           39 WKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEH--PKKEHVFCLSNSCGDVYLFQATSQTDLENWV  116 (263)
T ss_dssp             CEEEEEEEETTEEEEESSCCC------CCCSEEEECTTCEEEECTTC--SSCSSEEEEECTTSCEEEEECSSHHHHHHHH
T ss_pred             ceEEEEEEcCCEEEEEecCcccccccccCccceEEcCCcEEEECCcC--CCCCCEEEEEcCCCcEEEEEcCCHHHHHHHH
Confidence            4446899999999999984      5678999999999998765432  3678999999877799999999999999999


Q ss_pred             HHHHHhhhh
Q psy4640          95 NALSLASIL  103 (109)
Q Consensus        95 ~aI~~a~~~  103 (109)
                      +||+.|+..
T Consensus       117 ~aI~~a~~~  125 (263)
T 3a8p_A          117 TAIHSACAS  125 (263)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998754

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.76  E-value=1.5e-18  Score=113.87  Aligned_cols=79  Identities=18%  Similarity=0.215  Sum_probs=65.9

Q ss_pred             ceEEee--CCeEEEEcCC-CCCcccEEEEcCCeEEeecCCC---Cc---ccceeeEEEeeCCceEEEEEcCCHHHHHHHH
Q psy4640          24 LDSIGS--RNGLAVTDRF-EEEKLLGSILLPSYKISPCSSD---DK---VFRKFSFKAEHANMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        24 ~~~vL~--~~~L~yyk~~-~d~~p~G~I~L~~~~V~~~~~~---~~---~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi   94 (109)
                      -|+||+  +..|+||+++ .+.+|.|.|+|.+|+|..+.+.   +.   ..++++|.|.+++.|+|+|+|+|++|+++||
T Consensus        37 R~fvL~~d~~~L~yy~~~~~~~~~~g~i~L~~~~v~~~~~~~~p~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi  116 (129)
T 1x1g_A           37 RRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWI  116 (129)
T ss_dssp             EEEEEEESSCEEEEECSSSCCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHH
T ss_pred             EEEEEeCCCCeEEEeCCCCcCCccceEEECcCCEEEEeCCCCCcccccCCCCCceEEEEcCCCCEEEEEcCCHHHHHHHH
Confidence            478999  4799999998 7889999999999987655432   00   1157999999887789999999999999999


Q ss_pred             HHHHHhhh
Q psy4640          95 NALSLASI  102 (109)
Q Consensus        95 ~aI~~a~~  102 (109)
                      ++|+.|+.
T Consensus       117 ~al~~~~~  124 (129)
T 1x1g_A          117 EAIKKLTS  124 (129)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHHHh
Confidence            99999874

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=114.04  Aligned_cols=76  Identities=17%  Similarity=0.179  Sum_probs=64.8

Q ss_pred             ceEEee--CCeEEEEcCCCCC--cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          24 LDSIGS--RNGLAVTDRFEEE--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        24 ~~~vL~--~~~L~yyk~~~d~--~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      -|+||+  ++.|+||+++.+.  .|.|.|+|.+|+|....     .++++|.|.+++.|+|+|+|+|++|+++||++|+.
T Consensus        27 R~fvL~~~~~~L~Yyk~~~~~~~~~~g~I~L~~~~v~~~~-----~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~  101 (120)
T 2d9x_A           27 RFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSD-----EDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQI  101 (120)
T ss_dssp             EEEEECTTTCEEEEESSGGGSSSCCSEEEECTTCCEECCS-----SSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCEEEEEecCcccCCCccceEEcceEEEEecC-----CCCCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHH
Confidence            478998  5799999988764  89999999999876532     34699999887779999999999999999999999


Q ss_pred             hhhhc
Q psy4640         100 ASILQ  104 (109)
Q Consensus       100 a~~~~  104 (109)
                      |+...
T Consensus       102 ~~~~~  106 (120)
T 2d9x_A          102 CTQHH  106 (120)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87544

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=99.76  E-value=7.7e-19  Score=116.00  Aligned_cols=82  Identities=18%  Similarity=0.223  Sum_probs=65.1

Q ss_pred             cCCceEEeeCCeEEEEcCCCC---CcccEEEEcCCeEE---eecCCCCcccceeeEEEee--CC----------------
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEE---EKLLGSILLPSYKI---SPCSSDDKVFRKFSFKAEH--AN----------------   76 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d---~~p~G~I~L~~~~V---~~~~~~~~~~k~~~F~i~~--~~----------------   76 (109)
                      +++-|+||+++.|+||+++.+   ..|.|.|+|.+|++   ...+. +..+++|+|+|.+  |.                
T Consensus        23 WkrRwfvL~~~~L~yyk~~~d~~~~~p~g~I~L~~~~~~~v~~~~~-~~~~~~~~F~i~~~~p~~~~~~~~~~~~~~~~~  101 (134)
T 2y7b_A           23 WHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANR-EFCARRNTFELITVRPQREDDRETLVSQCRDTL  101 (134)
T ss_dssp             EEEEEEEEETTEEEEESSHHHHTTSCCSEEEEGGGBCSSSCEECCT-TTCCCTTEEEEEEEEECCTTCCCCSSEEEETTE
T ss_pred             cEEEEEEEECCEEEEECCCCcccccCceEEEEhhhCccccccccch-hhccCCCEEEEEecCCCcccccccccccccCCC
Confidence            344589999999999996544   89999999999874   43322 2246789999976  32                


Q ss_pred             -ceEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640          77 -MRTYYFAADTRESMIQWMNALSLASIL  103 (109)
Q Consensus        77 -~r~y~fsA~s~~e~~~Wi~aI~~a~~~  103 (109)
                       .|+|+|+|+|++|+++||+||+.|+..
T Consensus       102 ~~r~~~l~A~s~~e~~~Wi~al~~~i~~  129 (134)
T 2y7b_A          102 CVTKNWLSADTKEERDLWMQKLNQVLVD  129 (134)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence             268999999999999999999998754

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=99.76  E-value=2.4e-18  Score=119.75  Aligned_cols=81  Identities=14%  Similarity=0.127  Sum_probs=65.4

Q ss_pred             CCceEEeeCCeEEEEcC----CCCCcccEEEEcCCeE-EeecCC--CCcccce---------------------eeEEEe
Q psy4640          22 SDLDSIGSRNGLAVTDR----FEEEKLLGSILLPSYK-ISPCSS--DDKVFRK---------------------FSFKAE   73 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~----~~d~~p~G~I~L~~~~-V~~~~~--~~~~~k~---------------------~~F~i~   73 (109)
                      ++-|+||++++|+||++    +.+.+|.|.|+|.++. |+.+.+  ....+++                     |+|+|.
T Consensus        25 KkRwFVL~~~~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~  104 (169)
T 1btk_A           25 KKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVV  104 (169)
T ss_dssp             EEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEEEEEE
T ss_pred             ceEEEEEcCCEEEEEecCCccCCCCceeeEEECcceEEEEeccCCCCcchhcccccccCcccccccccccccccccEEEE
Confidence            33479999999999998    5678999999999986 555521  1112222                     899999


Q ss_pred             eCCceEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640          74 HANMRTYYFAADTRESMIQWMNALSLASIL  103 (109)
Q Consensus        74 ~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~  103 (109)
                      +++ |+|||+|+|++|+++||+||+.++..
T Consensus       105 t~~-rt~yl~A~s~~E~~eWi~aI~~~i~~  133 (169)
T 1btk_A          105 YDE-GPLYVFSPTEELRKRWIHQLKNVIRY  133 (169)
T ss_dssp             ETT-CCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred             eCC-ceEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            876 89999999999999999999998864

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=99.75  E-value=6.4e-18  Score=121.29  Aligned_cols=82  Identities=12%  Similarity=0.162  Sum_probs=69.7

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCC-CCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~-~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|.+|++....+ ....+++++|.|.+++.|+|+|+|+|++|+++||.||+.|
T Consensus       127 kkRwfVL~~~~L~Yyk~~~~~~p~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~a  206 (211)
T 1u5e_A          127 QKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI  206 (211)
T ss_dssp             EEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             EeEEEEEECCEEEEEcCCCCccceEEEEeCCcEEEEcCCccccCCCCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence            334799999999999999999999999999998765432 1123567999999887799999999999999999999998


Q ss_pred             hhh
Q psy4640         101 SIL  103 (109)
Q Consensus       101 ~~~  103 (109)
                      +..
T Consensus       207 i~~  209 (211)
T 1u5e_A          207 LQD  209 (211)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            864

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.75  E-value=5.1e-18  Score=109.69  Aligned_cols=75  Identities=17%  Similarity=0.123  Sum_probs=64.3

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|.+++ |...+       +++|.|.++ .|+|+|+|+|++|+++||++|+.|
T Consensus        26 kkR~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~-------~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~~l~~~   97 (115)
T 2cod_A           26 QKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQG-------DNKFEVVTT-QRTFVFRVEKEEERNDWISILLNA   97 (115)
T ss_dssp             EEEEEEECSSEEEEEESSCCSSCCCEEETTTEEEEEEET-------TTEEEEEES-SCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEECCEEEEEcCCCCcccCCEEECCcceEEEeCC-------CCEEEEEeC-CcEEEEECCCHHHHHHHHHHHHHH
Confidence            334799999999999999999999999999885 44322       589999866 489999999999999999999999


Q ss_pred             hhhc
Q psy4640         101 SILQ  104 (109)
Q Consensus       101 ~~~~  104 (109)
                      +..+
T Consensus        98 ~~~~  101 (115)
T 2cod_A           98 LKSQ  101 (115)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            8544

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=99.75  E-value=6.4e-18  Score=105.83  Aligned_cols=72  Identities=22%  Similarity=0.334  Sum_probs=61.5

Q ss_pred             ceEEeeCCeEEEEcCCCCC--cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          24 LDSIGSRNGLAVTDRFEEE--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d~--~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      -|+||+++.|+||+++.+.  .|.|.|+|.+|.+....     ..+++|.|.+++ |+|+|+|+|++|+++||+||+.|.
T Consensus        20 R~FvL~~~~L~Yy~~~~~~~~~~~~~i~l~~~~~~~~~-----~~~~~F~i~~~~-r~~~l~A~s~~e~~~Wi~aLq~Ak   93 (94)
T 2rsg_A           20 RWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHD-----FDECRFDISVND-SVWYLRAQDPDHRQQWIDAIEQHK   93 (94)
T ss_dssp             EEEEEETTEEEEESSTTGGGTCCSEEEETTTCEEEECS-----SCSSEEEEEETT-EEEEEECCSSCCTHHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEecccccccceeeEecceeeeecCc-----ccceeEEEEeCC-eEEEEECCCHHHHHHHHHHHHhhc
Confidence            3799999999999988654  58999999999876532     246899998875 999999999999999999999873

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=99.74  E-value=1.7e-17  Score=114.70  Aligned_cols=80  Identities=20%  Similarity=0.198  Sum_probs=65.3

Q ss_pred             ceEEeeCCeEEEEcCCCC-CcccEEEEcCCeE-EeecCCCC---cccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHH
Q psy4640          24 LDSIGSRNGLAVTDRFEE-EKLLGSILLPSYK-ISPCSSDD---KVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS   98 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d-~~p~G~I~L~~~~-V~~~~~~~---~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~   98 (109)
                      -|+||+++.|+||+++.+ ..+.|.|+|.++. |+.+.+.+   ....+++|.|.+++ |+|||+|+|++|+++||+||+
T Consensus        39 RwFVL~~~~L~Yyk~~~~~~~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~t~~-rt~~l~A~s~~e~~~Wi~aL~  117 (164)
T 2lul_A           39 RLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDA-NTLYIFAPSPQSRDLWVKKLK  117 (164)
T ss_dssp             EEEEEESSEEEEECCCSSSCCCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEEECSS-CEEEEECSSHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEeccCcccccccEEEEeeeEEEEeccccccCcccccceeEEEecCC-cEEEEECCCHHHHHHHHHHHH
Confidence            479999999999998764 4688999998875 55544322   23457899998775 899999999999999999999


Q ss_pred             Hhhhhc
Q psy4640          99 LASILQ  104 (109)
Q Consensus        99 ~a~~~~  104 (109)
                      .++...
T Consensus       118 ~~i~~n  123 (164)
T 2lul_A          118 EEIKNN  123 (164)
T ss_dssp             HHHTTC
T ss_pred             HHHHHC
Confidence            998754

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=99.73  E-value=1.2e-17  Score=114.65  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=59.6

Q ss_pred             cCCceEEeeCCeEEEEcCCCC--CcccEEEEcCC--eEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEE--EKLLGSILLPS--YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA   96 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d--~~p~G~I~L~~--~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~a   96 (109)
                      +++-|+||+++.|+||+++.+  ..+.|.|+|..  |.+....+  ..+++|+|.|.+++ |+|+|+|+|++||++||++
T Consensus        29 WkkRwfvL~~~~L~yyk~~~~~~~~~~g~i~l~~~~~~~~~~~~--~~~~~~~F~I~t~~-r~~~l~A~s~~e~~~Wi~a  105 (168)
T 2j59_M           29 WKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYS--ETKRKNVFRLTTSD-CECLFQAEDRDDMLAWIKT  105 (168)
T ss_dssp             CEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEECSS--SCSCSSEEEEECSS-CEEEEECSSHHHHHHHHHH
T ss_pred             ceEEEEEEeCCEEEEEECCcccccccCCceEecccceEEEeccc--cCCCCCEEEEEeCC-ceEEEEcCCHHHHHHHHHH
Confidence            444589999999999999965  67899999865  66554332  23678999999876 8999999999999999999


Q ss_pred             HHHhhhh
Q psy4640          97 LSLASIL  103 (109)
Q Consensus        97 I~~a~~~  103 (109)
                      |+.|+..
T Consensus       106 i~~~~~~  112 (168)
T 2j59_M          106 IQESSNL  112 (168)
T ss_dssp             HHHHCCC
T ss_pred             HHHHHhc
Confidence            9998753

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=4.6e-17  Score=105.50  Aligned_cols=74  Identities=19%  Similarity=0.276  Sum_probs=61.4

Q ss_pred             CceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          23 DLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        23 ~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      +-|+||+++.|+||+++.+ .+.+.|.|.+|.|...+     .++++|.|.+++ |+|+|+|+|++|+++||+||+.|+.
T Consensus        29 kR~fvL~~~~L~yyk~~~~-~~~~~i~l~~~~v~~~~-----~~~~~F~I~~~~-r~~~l~a~s~~e~~~Wi~al~~~~~  101 (114)
T 2da0_A           29 RRKCSVKNGILTISHATSN-RQPAKLNLLTCQVKPNA-----EDKKSFDLISHN-RTYHFQAEDEQDYVAWISVLTNSKE  101 (114)
T ss_dssp             EEEEEEETTEEEECCSSCC-SCCEEEETTTSEEEECS-----SSSSCEEEEETT-EEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCEEEEEcCCCC-CCCCEEEeeeeEEEECC-----CCCCEEEEEcCC-cEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            3479999999999999755 66777888788776432     246899998764 9999999999999999999999875


Q ss_pred             h
Q psy4640         103 L  103 (109)
Q Consensus       103 ~  103 (109)
                      .
T Consensus       102 ~  102 (114)
T 2da0_A          102 E  102 (114)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.70  E-value=5.8e-17  Score=123.64  Aligned_cols=78  Identities=17%  Similarity=0.146  Sum_probs=68.4

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCC---------------------ceEE
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN---------------------MRTY   80 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~---------------------~r~y   80 (109)
                      ++-|+||++++|+||+++.+.+|.|.|+|.+|+|..+.+   .++++||+|.+++                     .|+|
T Consensus       230 kkRwFVL~~~~L~Yyk~~~~~~p~G~I~L~~~~v~~~~~---~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y  306 (347)
T 2r09_A          230 KRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVED---PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVY  306 (347)
T ss_dssp             EEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECC---SSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCE
T ss_pred             eeEEEEEcCCEEEEEcCCCccCCcEEEEcCCeEEEEccC---CCCCCEEEEEeCCccccccccccccccccccccCceEE
Confidence            334799999999999999999999999999999877654   3678999998653                     4899


Q ss_pred             EEEcCCHHHHHHHHHHHHHhhh
Q psy4640          81 YFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        81 ~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      +|+|+|++|+++||++|+.|+.
T Consensus       307 ~l~A~s~ee~~~Wi~aI~~ai~  328 (347)
T 2r09_A          307 RISAPSPEEKEEWMKSIKASIS  328 (347)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999875

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=99.69  E-value=1.4e-17  Score=108.99  Aligned_cols=81  Identities=11%  Similarity=0.090  Sum_probs=64.7

Q ss_pred             CceEEeeC-CeEEEEcCCCCCcccEEEEcCCeEEeecC--CCCcccceeeEEEee---CCceEEEEEcCCHHHHHHHHHH
Q psy4640          23 DLDSIGSR-NGLAVTDRFEEEKLLGSILLPSYKISPCS--SDDKVFRKFSFKAEH---ANMRTYYFAADTRESMIQWMNA   96 (109)
Q Consensus        23 ~~~~vL~~-~~L~yyk~~~d~~p~G~I~L~~~~V~~~~--~~~~~~k~~~F~i~~---~~~r~y~fsA~s~~e~~~Wi~a   96 (109)
                      +-|+||++ +.|+||+++.+..+.|.|+|.++++..+.  ..+ .+++++|.|.+   ...|+|+|+|+|++|+++||+|
T Consensus        26 kRwfvL~~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~-~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~a  104 (125)
T 1unq_A           26 PRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTE-RPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTA  104 (125)
T ss_dssp             EEEEEEETTSEEEEESSCCCSHHHHTSCSEEEECTTCEEEEEC-SSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHH
T ss_pred             CcEEEEecCCEEEEEeCCCCCCCCceeEccceeEEeeeecccc-cCCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHH
Confidence            34799995 69999999999899999999877653221  111 25679999986   4568999999999999999999


Q ss_pred             HHHhhhhc
Q psy4640          97 LSLASILQ  104 (109)
Q Consensus        97 I~~a~~~~  104 (109)
                      |+.|+...
T Consensus       105 l~~~~~~~  112 (125)
T 1unq_A          105 IQTVADGL  112 (125)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhc
Confidence            99988543

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=99.68  E-value=1.3e-16  Score=115.24  Aligned_cols=76  Identities=22%  Similarity=0.204  Sum_probs=65.5

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|.+|++.....    .++++|.|.+++ |+|+|+|+|++|+++||++|+.++
T Consensus        80 kkRwfvL~~~~L~Yyk~~~~~~~~g~I~L~~~~~v~~~~----~k~~~F~I~t~~-r~~~l~A~s~~e~~~Wv~aL~~~i  154 (228)
T 3tfm_A           80 KKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNT----NKENGIDIIMAD-RTFHLIAESPEDASQWFSVLSQVH  154 (228)
T ss_dssp             EEEEEEECSSEEEEESSTTCCSEEEEEEGGGCSEEEEET----TTTSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEeCCEEEEEeCCCCcceeEEEEcCCCEEeccCC----CCCcEEEEEcCC-cEEEEEcCCHHHHHHHHHHHHHHH
Confidence            334799999999999999999999999999987533222    457999998765 999999999999999999999988


Q ss_pred             h
Q psy4640         102 I  102 (109)
Q Consensus       102 ~  102 (109)
                      .
T Consensus       155 ~  155 (228)
T 3tfm_A          155 S  155 (228)
T ss_dssp             T
T ss_pred             h
Confidence            5

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=99.68  E-value=1.2e-16  Score=122.68  Aligned_cols=80  Identities=9%  Similarity=0.086  Sum_probs=68.7

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCc-eEEEEEcCCHHHHHHHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM-RTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~-r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      |++-|+||++++|+||++ .+..|.|.|+|.+|+|..+++   ..++|||+|.+++. |+|+|+|+|++||++||+||+.
T Consensus       297 WkkRwfvL~~~~L~y~k~-~~~~~~~~i~l~~~~v~~~~~---~~r~~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~  372 (385)
T 2q13_A          297 WDRQFYFTQGGNLMSQAR-GDVAGGLAMDIDNCSVMAVDC---EDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINN  372 (385)
T ss_dssp             CEEEEEEEETTEEEEECS-SCSSCEEEEECTTCEEEEECC---TTCSSEEEEECTTSCBCCCEECSSHHHHHHHHHHHHH
T ss_pred             ceeEEEEEECCEEEEecC-CCcCCCceEEccceEEEeccc---cCCCceEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHH
Confidence            444579999999999999 467789999999999887654   25689999998764 8999999999999999999999


Q ss_pred             hhhhc
Q psy4640         100 ASILQ  104 (109)
Q Consensus       100 a~~~~  104 (109)
                      ++..-
T Consensus       373 ~~~~~  377 (385)
T 2q13_A          373 ISKQI  377 (385)
T ss_dssp             HHTTC
T ss_pred             HHHhh
Confidence            87643

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=99.66  E-value=1e-16  Score=105.88  Aligned_cols=85  Identities=15%  Similarity=0.084  Sum_probs=58.8

Q ss_pred             ccccCCceEEeeC-CeEEEEcCCCC-----------------CcccEEEEcCCeEEeecCC---CCcccceeeEEEeeCC
Q psy4640          18 KSVGSDLDSIGSR-NGLAVTDRFEE-----------------EKLLGSILLPSYKISPCSS---DDKVFRKFSFKAEHAN   76 (109)
Q Consensus        18 ~~~~~~~~~vL~~-~~L~yyk~~~d-----------------~~p~G~I~L~~~~V~~~~~---~~~~~k~~~F~i~~~~   76 (109)
                      |.|-++ |+||++ +.|+||++..+                 ..|.|.|+|.+|++..+..   .....++++|.|.+++
T Consensus        20 k~WkkR-wFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~F~I~t~~   98 (128)
T 2rlo_A           20 KEWKKK-YVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSST   98 (128)
T ss_dssp             CCEEEE-EEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCCCCSSCCCCCCCEEEECTT
T ss_pred             CCccEE-EEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCccccccccccccccccccccccCCceEEEEcCC
Confidence            344443 789996 78889976321                 2355566666655432210   0001457999999887


Q ss_pred             ceEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640          77 MRTYYFAADTRESMIQWMNALSLASIL  103 (109)
Q Consensus        77 ~r~y~fsA~s~~e~~~Wi~aI~~a~~~  103 (109)
                      .|+|+|+|+|++|+++||+||+.|+..
T Consensus        99 ~r~~~l~A~s~~e~~~Wi~ai~~~i~~  125 (128)
T 2rlo_A           99 GQTWHFEAASFEERDAWVQAIESQILA  125 (128)
T ss_dssp             SCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999998753

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=99.66  E-value=7.8e-17  Score=120.36  Aligned_cols=82  Identities=9%  Similarity=0.066  Sum_probs=69.1

Q ss_pred             ccCCceEEeeCCeEEEEcCCCC------CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEE------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW   93 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d------~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~W   93 (109)
                      -|+..|+||+++.|+||+++..      ..|.+.|+|.++.|..+.+  ..+++|+|+|.+++.++|+|+|+|.+||++|
T Consensus        38 ~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~d--~~kKk~vF~L~t~~g~~yLFQA~s~eEm~~W  115 (279)
T 3a8n_A           38 KWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPE--HPKKDFVFCLSNSLGDAFLFQTTSQTELENW  115 (279)
T ss_dssp             CCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCTT--SSSSCSCCCEEETTTEEEECCCSCHHHHHHH
T ss_pred             CCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEEeccc--cCCCCcEEEEEcCCCCEEEEeCCCHHHHHHH
Confidence            3445789999999999998863      3688999999999886543  3467899999988889999999999999999


Q ss_pred             HHHHHHhhhh
Q psy4640          94 MNALSLASIL  103 (109)
Q Consensus        94 i~aI~~a~~~  103 (109)
                      |.+|+.|+..
T Consensus       116 I~aI~~a~~~  125 (279)
T 3a8n_A          116 ITAIHSACAA  125 (279)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999998863

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=99.65  E-value=7e-16  Score=105.90  Aligned_cols=58  Identities=21%  Similarity=0.316  Sum_probs=49.3

Q ss_pred             cEEEEcCCeEEeecCCCCcccceeeEEEeeC--CceEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640          45 LGSILLPSYKISPCSSDDKVFRKFSFKAEHA--NMRTYYFAADTRESMIQWMNALSLASIL  103 (109)
Q Consensus        45 ~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~--~~r~y~fsA~s~~e~~~Wi~aI~~a~~~  103 (109)
                      .|+|+|.||.|+..+.. +..++|+|+|.++  +.++|+|+|+|.+||.+||+||+.|++.
T Consensus        90 kG~IdL~gc~V~~~~~~-~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~~  149 (150)
T 2fjl_A           90 RGVLDVPACQIAIRPEG-KNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT  149 (150)
T ss_dssp             CEEECSTTCEEEEETTC-SSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred             cceEecCccEEEeccCC-CCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            79999999999876542 2367899999865  3579999999999999999999999863

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.65  E-value=9.3e-16  Score=118.60  Aligned_cols=80  Identities=14%  Similarity=0.109  Sum_probs=64.7

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCC----eEEeecCCCCccc--ceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPS----YKISPCSSDDKVF--RKFSFKAEHANMRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~----~~V~~~~~~~~~~--k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~   95 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|..    +.|....+.+..+  ++|+|.|.+++ |+|+|+|+|++|+++||+
T Consensus       287 KkRwFVL~~~~L~YYk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~~F~I~t~~-rty~l~A~s~~e~~~Wi~  365 (386)
T 3lju_X          287 RKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPD-RKFLFACETESDQREWVA  365 (386)
T ss_dssp             EEEEEEEETTEEEEESSTTCSBCSEEEECCCGGGTCEEEESCCTTCCSCCSCEEEEEECSS-CEEEEEESSHHHHHHHHH
T ss_pred             cccEEEEECCEEEEEecCCCcccceEEEeecceeeeeecccCCccccccCCCcEEEEEeCC-eEEEEEcCCHHHHHHHHH
Confidence            3347999999999999999999999999954    4454433322112  26999999875 999999999999999999


Q ss_pred             HHHHhhh
Q psy4640          96 ALSLASI  102 (109)
Q Consensus        96 aI~~a~~  102 (109)
                      ||+.++.
T Consensus       366 aL~~~i~  372 (386)
T 3lju_X          366 AFQKAVD  372 (386)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999874

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=99.64  E-value=5e-16  Score=114.90  Aligned_cols=80  Identities=16%  Similarity=0.007  Sum_probs=65.9

Q ss_pred             cCCceEEeeCC-------eEEEEcCCCC-----CcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCH
Q psy4640          21 GSDLDSIGSRN-------GLAVTDRFEE-----EKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTR   87 (109)
Q Consensus        21 ~~~~~~vL~~~-------~L~yyk~~~d-----~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~   87 (109)
                      +++-|+||+++       .|+||+++.+     .+|.|.|+|.+|. |....+   .+++|+|.|.++ .|+|+|+|+|+
T Consensus        22 WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~---~~~~~~F~I~t~-~rty~l~A~se   97 (264)
T 1qqg_A           22 MHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRAD---SKNKHLVALYTR-DEHFAIAADSE   97 (264)
T ss_dssp             CCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECC---SSCSSEEEEEES-SCEEEEECSSH
T ss_pred             CEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccC---CCCCcEEEEEEC-CEEEEEEeCCH
Confidence            44458999998       9999999887     6899999999986 554433   356899999987 59999999999


Q ss_pred             HHHHHHHHHHHHhhhhc
Q psy4640          88 ESMIQWMNALSLASILQ  104 (109)
Q Consensus        88 ~e~~~Wi~aI~~a~~~~  104 (109)
                      +|+++||++|+.++...
T Consensus        98 ~e~~~Wi~aL~~~~~~~  114 (264)
T 1qqg_A           98 AEQDSWYQALLQLHNRA  114 (264)
T ss_dssp             HHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999987654

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=99.63  E-value=3.1e-16  Score=121.14  Aligned_cols=79  Identities=15%  Similarity=0.105  Sum_probs=67.4

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCC-ceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-MRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~-~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      |++-|+||+++.|+||+.. +..+.+.|+|.+|+|..++..   .++|||+|.+++ .|+|+|+|+|++||++||+||+.
T Consensus       320 W~rrwfvl~~~~l~y~~~~-~~~~~~~~~l~~~~v~~~~~~---~r~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~  395 (407)
T 4h8s_A          320 WERLYFFTQGGNLMCQPRG-AVAGGLIQDLDNCSVMAVDCE---DRRYCFQITTPNGKSGIILQAESRKENEEWICAINN  395 (407)
T ss_dssp             EEEEEEEECSSCEECCCTT-CSSCCCCBCSSCCEEEEECCT---TCSSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCEEEEEeCC-CCCCCeEEECCceEEEECCCC---CCCceEEEEecCCCceEEEEcCCHHHHHHHHHHHHH
Confidence            3445899999999999976 467889999999999877653   468999999875 57999999999999999999999


Q ss_pred             hhhh
Q psy4640         100 ASIL  103 (109)
Q Consensus       100 a~~~  103 (109)
                      |+..
T Consensus       396 a~~~  399 (407)
T 4h8s_A          396 ISRQ  399 (407)
T ss_dssp             HHSC
T ss_pred             HHHH
Confidence            8754

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=99.60  E-value=1.2e-15  Score=111.98  Aligned_cols=83  Identities=12%  Similarity=0.069  Sum_probs=64.5

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcC---CeEEeecCCC---CcccceeeEEEeeCC-----ceEEEEEcCCHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLP---SYKISPCSSD---DKVFRKFSFKAEHAN-----MRTYYFAADTRES   89 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~---~~~V~~~~~~---~~~~k~~~F~i~~~~-----~r~y~fsA~s~~e   89 (109)
                      +++-|+||+++.||||+++.+.+|.|.|+|.   ++.|......   ....++|||.|.+++     .++|||+|+|++|
T Consensus       184 WkkR~fvL~~~~L~yyk~~~~~~~~~~i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~~l~A~s~~e  263 (291)
T 3tca_A          184 WKRRYFLLRASGIYYVPKGKTKTSRDLACFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHPQIQKESQYIKYLCCDDART  263 (291)
T ss_dssp             EEEEEEEECSSEEEECCTTCCSSTTTCEEEEEGGGCEEEEECSHHHHHCCSSSCEEEEECTTCCSCCTTSEEEECSSHHH
T ss_pred             ceEEEEEEeCCEEEEEecCccccccCceeeccceeEEEEecCccccccCCCCCeEEEEEcCCCCCCCceEEEEECCCHHH
Confidence            3445899999999999999999999888874   4455433221   122457999998653     4679999999999


Q ss_pred             HHHHHHHHHHhhhh
Q psy4640          90 MIQWMNALSLASIL  103 (109)
Q Consensus        90 ~~~Wi~aI~~a~~~  103 (109)
                      +.+||+||+.|.+.
T Consensus       264 ~~~Wi~air~Ak~g  277 (291)
T 3tca_A          264 LSQWVMGIRIAKYG  277 (291)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999998754

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=99.59  E-value=5.2e-15  Score=102.88  Aligned_cols=84  Identities=18%  Similarity=0.152  Sum_probs=69.2

Q ss_pred             cccCCceEEeeCCeEEEEcCCCC--CcccEEEEcCCeEEeecCCCCcccceeeEEEeeC---CceEEEEEcCCHHHHHHH
Q psy4640          19 SVGSDLDSIGSRNGLAVTDRFEE--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA---NMRTYYFAADTRESMIQW   93 (109)
Q Consensus        19 ~~~~~~~~vL~~~~L~yyk~~~d--~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~---~~r~y~fsA~s~~e~~~W   93 (109)
                      +.-+.-|+|+++..|+|||++++  ..|.|.|+|.||+|.+.-..  ...+|.|++.-|   +...|||.|+|++++.+|
T Consensus        64 KgyKryWFv~kd~~LsyYKskEe~~geP~~~I~LrGCEVtpDVnv--a~~Kf~IkL~vP~~~gm~e~~Lrcd~E~qya~W  141 (173)
T 4f7h_A           64 KGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNI--SGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHW  141 (173)
T ss_dssp             CCCEEEEEEEETTEEEEESCGGGCSSCCSEEEECTTCEEEEEEET--TTTEEEEEEEEEETTEEEEEEEEESSHHHHHHH
T ss_pred             ccceeEEEEEeCCEEEEEcCHhHhcCCCceEEecCceEEeccccc--cccceeEEEeccCCCCcceeeeecCCHHHHHHH
Confidence            34444689999999999999887  78999999999999863221  245788887533   788999999999999999


Q ss_pred             HHHHHHhhhhc
Q psy4640          94 MNALSLASILQ  104 (109)
Q Consensus        94 i~aI~~a~~~~  104 (109)
                      |+|.+.|+...
T Consensus       142 MAAcrLAskGk  152 (173)
T 4f7h_A          142 MAACRLASKGK  152 (173)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHhhhhccCC
Confidence            99999999775

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.56  E-value=4.9e-15  Score=114.56  Aligned_cols=76  Identities=12%  Similarity=0.227  Sum_probs=59.7

Q ss_pred             eEEe--eCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEe---eCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          25 DSIG--SRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE---HANMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        25 ~~vL--~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~---~~~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      |+||  ++++|+||+++.+.+|.|.|.|.++++...+.  ..+++++|.|.   ....|+|||+|+|.+||++||++|+.
T Consensus       166 wFVL~~~~~~L~Yy~~~~~~~p~g~I~L~~~~~~~~~~--~~~~~~~f~I~~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~  243 (386)
T 3lju_X          166 KFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPA--KIGHPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRA  243 (386)
T ss_dssp             EEEEETTTTEEEEEC-----CCSEEEEGGGEEEEECHH--HHTSTTCEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCEEEEECCCCccCcccEEEeeccEEEEccc--ccCCCceEEEEEecCCCceEEEEEcCCHHHHHHHHHhhhh
Confidence            6899  89999999999999999999999987665322  23568999986   25569999999999999999999998


Q ss_pred             hhh
Q psy4640         100 ASI  102 (109)
Q Consensus       100 a~~  102 (109)
                      |..
T Consensus       244 a~~  246 (386)
T 3lju_X          244 ARF  246 (386)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            853

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=99.55  E-value=2.5e-14  Score=94.27  Aligned_cols=83  Identities=13%  Similarity=0.095  Sum_probs=65.1

Q ss_pred             ccCCceEEeeCCeEEEEcCCCCC---cccEEEEcCCe-EEeecCCCC-----cccceeeEEEeeC-----CceEEEEEcC
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEEE---KLLGSILLPSY-KISPCSSDD-----KVFRKFSFKAEHA-----NMRTYYFAAD   85 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d~---~p~G~I~L~~~-~V~~~~~~~-----~~~k~~~F~i~~~-----~~r~y~fsA~   85 (109)
                      .+++-++||.++.|+||+++.+.   .|.|.|+|+.+ .|+.+.+.|     ....++.|+|..+     ..+++||.|+
T Consensus        19 ~Wkkr~~vL~~~kL~~y~~~~~~~~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I~~~~~~~~~~~~l~l~A~   98 (117)
T 2rov_A           19 GWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLAN   98 (117)
T ss_dssp             CCCEEEEEEETTEEEEESCHHHHHTTCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEEEECSSSSTTCEEEEEECS
T ss_pred             CcEEEEEEEECCEEEEEECCCCcccCCceEEEECcccEEEEEcccccccccccccCCcEEEEEeCCCCCCCCcEEEEEeC
Confidence            45556899999999999987654   89999999765 466664422     1224678999763     3599999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q psy4640          86 TRESMIQWMNALSLASI  102 (109)
Q Consensus        86 s~~e~~~Wi~aI~~a~~  102 (109)
                      |++|+++||.+|+.++.
T Consensus        99 s~~e~~~WV~aL~~~i~  115 (117)
T 2rov_A           99 STEEQQKWVSRLVKKIP  115 (117)
T ss_dssp             SHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999998874

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=99.53  E-value=4.8e-14  Score=97.20  Aligned_cols=83  Identities=22%  Similarity=0.219  Sum_probs=68.3

Q ss_pred             cccCCceEEeeCCeEEEEcCCCC--CcccEEEEcCCeEEee-cCCCCcccceeeEEEee---CCceEEEEEcCCHHHHHH
Q psy4640          19 SVGSDLDSIGSRNGLAVTDRFEE--EKLLGSILLPSYKISP-CSSDDKVFRKFSFKAEH---ANMRTYYFAADTRESMIQ   92 (109)
Q Consensus        19 ~~~~~~~~vL~~~~L~yyk~~~d--~~p~G~I~L~~~~V~~-~~~~~~~~k~~~F~i~~---~~~r~y~fsA~s~~e~~~   92 (109)
                      +..+.-|+|++|..|+|||++++  ..|.+.|+|.||+|.+ +..   ...+|.|+|.-   ++...+||.|+|+++..+
T Consensus        43 KgfKryWfv~kDt~LsyYKSkEe~~geP~~~inLrGCEVtPDVnv---a~~Kf~ikL~ip~~~gm~e~~LrcdsE~QYa~  119 (165)
T 4bbk_A           43 KACKQYWFVFKDTSIAYFKNKELEQGEPIEKLNLRGCEIVPDVNV---SGRKFGIKLLIPVADGMNEVYLRCDHEDQYAR  119 (165)
T ss_dssp             -CCEEEEEEEETTEEEEESSGGGTTSCCSEEEECTTCEEEEEEET---TTTEEEEEEEEEETTEEEEEEEEESSHHHHHH
T ss_pred             ccceeEEEEEeCCEEEEEcCHHHhcCCCceEEecCccEEeccccc---ccceeeEEEecCCCCcceeeeeecCCHHHHHH
Confidence            44455689999999999999877  6799999999999875 322   24578888843   367799999999999999


Q ss_pred             HHHHHHHhhhhc
Q psy4640          93 WMNALSLASILQ  104 (109)
Q Consensus        93 Wi~aI~~a~~~~  104 (109)
                      ||+|++.|+...
T Consensus       120 WMAAcrLAskGk  131 (165)
T 4bbk_A          120 WMAACILASKGK  131 (165)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHhhhccccc
Confidence            999999999864

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=7.2e-13  Score=88.38  Aligned_cols=93  Identities=18%  Similarity=0.185  Sum_probs=71.6

Q ss_pred             CCCCcccccCCceEEeeCC------eEEEEcCCCC----CcccEEEEcCCe-EEeecCCC-CcccceeeEEEeeCCceEE
Q psy4640          13 SPSSRKSVGSDLDSIGSRN------GLAVTDRFEE----EKLLGSILLPSY-KISPCSSD-DKVFRKFSFKAEHANMRTY   80 (109)
Q Consensus        13 ~~~~~~~~~~~~~~vL~~~------~L~yyk~~~d----~~p~G~I~L~~~-~V~~~~~~-~~~~k~~~F~i~~~~~r~y   80 (109)
                      +.+++|+ +++.|+||...      .|.||.+++.    ..+..+|.|.+| +|..+..+ ...+..++|.|.+++ |+|
T Consensus        23 q~~fgkK-Wrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~pk~~~aF~l~T~e-r~~  100 (127)
T 2d9w_A           23 QQTFGKK-WRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPRDTSAFFLETKE-RLY  100 (127)
T ss_dssp             CSSSSCB-CCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSSCSSCEEEEEEESS-CEE
T ss_pred             cchhhhh-hheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccCCCCcceEEEEEeCC-cEE
Confidence            3377777 55569999654      4999998754    267899999999 57776543 223456899999886 999


Q ss_pred             EEEcCCHHHHHHHHHHHHHhhhhccCCC
Q psy4640          81 YFAADTRESMIQWMNALSLASILQNSST  108 (109)
Q Consensus        81 ~fsA~s~~e~~~Wi~aI~~a~~~~~~~~  108 (109)
                      +|+|++. |+.+||.+|....-+..+++
T Consensus       101 ~laAe~~-E~~~Wi~~ic~~aF~~~~s~  127 (127)
T 2d9w_A          101 LLAAPAA-ERGDWVQAICLLAFSGPSSG  127 (127)
T ss_dssp             EEEECHH-HHHHHHHHHHHHHTSSCCCC
T ss_pred             EEEeCcH-HHHHHHHHHHHHhcCCCCCC
Confidence            9999965 89999999999887766653

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=99.32  E-value=6.5e-12  Score=92.72  Aligned_cols=84  Identities=13%  Similarity=0.073  Sum_probs=63.9

Q ss_pred             ccCCceEEeeCCeEEEEcCCCCCcccEE---EEcCCeEEeecCCCC---cccceeeEEEeeCCc-----eEEEEEcCCHH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEEEKLLGS---ILLPSYKISPCSSDD---KVFRKFSFKAEHANM-----RTYYFAADTRE   88 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d~~p~G~---I~L~~~~V~~~~~~~---~~~k~~~F~i~~~~~-----r~y~fsA~s~~   88 (109)
                      -+++-|++|++++||||+..+.+.+.+.   ++|+++.|-.+.+..   +..++|||.|.++..     ..+||+|+|++
T Consensus       147 ~WkkRyfvLr~sgLy~~~k~~sk~~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~~k~~~~~~~~~~lcaede~  226 (256)
T 3hk0_A          147 SWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQ  226 (256)
T ss_dssp             CEEEEEEEEETTEEEEESSTTCCCGGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEEETTCSSCCTTCEEEEESSHH
T ss_pred             cceEEEEEEeCCEEEEEecCCCCccccceEEEEcCCCEEEEecccccccCCCCCCEEEEEcccccCCCceEEEEEeCCHH
Confidence            3444589999999999998876666654   799999885543311   112379999985432     36999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q psy4640          89 SMIQWMNALSLASIL  103 (109)
Q Consensus        89 e~~~Wi~aI~~a~~~  103 (109)
                      ++.+||+||+.|...
T Consensus       227 ~~~~W~~aIr~ak~g  241 (256)
T 3hk0_A          227 TRTSWMTAFRLLKYG  241 (256)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998754

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=99.27  E-value=8.9e-12  Score=93.08  Aligned_cols=83  Identities=12%  Similarity=0.120  Sum_probs=58.3

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcc---cEEEEcCCeEEeecCCC---CcccceeeEEEeeCC-----ceEEEEEcCCHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKL---LGSILLPSYKISPCSSD---DKVFRKFSFKAEHAN-----MRTYYFAADTRES   89 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p---~G~I~L~~~~V~~~~~~---~~~~k~~~F~i~~~~-----~r~y~fsA~s~~e   89 (109)
                      +++-|+||+++.||||+..+++.+   .+.++|+++.|-.+...   -+..++|||.|.+++     ...|||+|+|+++
T Consensus       174 WkkRyfvLr~sgLyy~~K~~sk~~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~~~~~~~~~~~~~caede~~  253 (281)
T 4gmv_A          174 WKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYLCCDDVRT  253 (281)
T ss_dssp             EEEEEEEECSSCEEEC---------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEECTTCCSCCTTCEEEECSSHHH
T ss_pred             CeEEEEEEeCCEEEEEeCCCCCccccceEEEEcCCcEEEEecccccccCCCCCcEEEEecCccCCCCCceEEEEeCCHHH
Confidence            344589999999999997665555   56779999887654321   112457999998643     4589999999999


Q ss_pred             HHHHHHHHHHhhhh
Q psy4640          90 MIQWMNALSLASIL  103 (109)
Q Consensus        90 ~~~Wi~aI~~a~~~  103 (109)
                      +..||+||+.|...
T Consensus       254 ~~~Wv~Air~ak~g  267 (281)
T 4gmv_A          254 LHQWVNGIRIAKYG  267 (281)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999998764

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.12  E-value=8.6e-11  Score=90.45  Aligned_cols=82  Identities=12%  Similarity=0.086  Sum_probs=56.1

Q ss_pred             cCCceEEee-CCeEEEEcCCCCCcccEEEEcCCeEEeecCC-CCcccceeeEEEeeCCceEE---EEEcCCHHHHHHHHH
Q psy4640          21 GSDLDSIGS-RNGLAVTDRFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKAEHANMRTY---YFAADTRESMIQWMN   95 (109)
Q Consensus        21 ~~~~~~vL~-~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~-~~~~~k~~~F~i~~~~~r~y---~fsA~s~~e~~~Wi~   95 (109)
                      +++-|+||+ ++.|+|||++.+..+.|.|+|.++++..+.. .....++++|.|..++.+.+   .|.+++.+++++|+.
T Consensus        22 Wk~r~fvL~~~~~l~yyk~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~I~~~~~~~~~~r~~~~~~~ee~e~W~~  101 (446)
T 4ejn_A           22 WRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTT  101 (446)
T ss_dssp             EEEEEEEEETTSBEEEESSCC-------CCCGGGBCTTCEEEEECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHH
T ss_pred             ccceEEEEeeCCEEEEEecCCCCCccCcccccCccccceeecCCCCCCCceeEEEcCCCceeeeeEEecCCHHHHHHHHH
Confidence            333478997 8999999999999999999998765422111 00124578999976655555   799999999999999


Q ss_pred             HHHHhhh
Q psy4640          96 ALSLASI  102 (109)
Q Consensus        96 aI~~a~~  102 (109)
                      ||+.++.
T Consensus       102 ai~~~i~  108 (446)
T 4ejn_A          102 AIQTVAD  108 (446)
T ss_dssp             HHHHHCC
T ss_pred             HHHhhhh
Confidence            9999864

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.99  E-value=3.4e-09  Score=70.45  Aligned_cols=89  Identities=15%  Similarity=0.104  Sum_probs=71.0

Q ss_pred             cccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCe-EEeecCCCC---cccceeeEEEeeCCceEEEEEcC---C-----
Q psy4640          19 SVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSY-KISPCSSDD---KVFRKFSFKAEHANMRTYYFAAD---T-----   86 (109)
Q Consensus        19 ~~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~-~V~~~~~~~---~~~k~~~F~i~~~~~r~y~fsA~---s-----   86 (109)
                      +.+++.+-+|...++-||++++++++...|+|.+. .|+.+....   ....+|||+|.+. .++||..++   .     
T Consensus        22 ~~rKRHYWrLD~K~Itlf~~e~~~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T~-~~~yyVg~~~~~~p~~~s  100 (125)
T 2coa_A           22 TLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTA-NATYFVGEMPGGTPGGPS  100 (125)
T ss_dssp             CCCEEEEEEECSSEEEEESSSSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECS-SCCCCEECCSCCCSSSCC
T ss_pred             ccccceeeEecCCeEEEEecCCCCceeeeeehhHeecccccccccccCCCCCCceEEEEeC-CeEEEEccCCCCCCCCcC
Confidence            45567888999999999999999999999999876 566654321   1235799999876 589999874   1     


Q ss_pred             ---HHHHHHHHHHHHHhhhhccCCC
Q psy4640          87 ---RESMIQWMNALSLASILQNSST  108 (109)
Q Consensus        87 ---~~e~~~Wi~aI~~a~~~~~~~~  108 (109)
                         .+.+..|..||++|.++-.+++
T Consensus       101 g~g~~~a~~W~~aIrqALmPv~~~~  125 (125)
T 2coa_A          101 GQGAEAARGWETAIRQALMSGPSSG  125 (125)
T ss_dssp             CCCSHHHHHHHHHHHHHGGGSSCCC
T ss_pred             ccccHHHHHHHHHHHhhccCCCCCC
Confidence               3679999999999999877764

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=98.97  E-value=2e-09  Score=73.75  Aligned_cols=72  Identities=14%  Similarity=0.108  Sum_probs=60.6

Q ss_pred             ceEEeeCCeEEEEcCCCCCcccEEEEcCC-eEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          24 LDSIGSRNGLAVTDRFEEEKLLGSILLPS-YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d~~p~G~I~L~~-~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      -+.||++.-.+||-|+.....+|.|+|+. +.|+..++       ..|.|.+|+ |+|+|.+. ..++++|++||..+..
T Consensus        69 R~liLT~~PrL~Yvdp~~~~~KGeIpls~~l~ve~k~~-------~~F~I~Tp~-RtY~~~d~-~~~AqeWv~aI~~~~~  139 (151)
T 1w1g_A           69 RQLLLTEGPHLYYVDPVNKVLKGEIPWSQELRPEAKNF-------KTFFVHTPN-RTYYLMDP-SGNAHKWCRKIQEVWR  139 (151)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEECCCTTCEEEESSS-------SEEEEEETT-EEEEEECT-TSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCceEEEEcCccccccceEecCCCeeEEEcCC-------CEEEEECCC-ceEEEEcC-ccCHHHHHHHHHHHHH
Confidence            36799999999999999999999999975 56665432       389998898 99999997 8899999999999875


Q ss_pred             hc
Q psy4640         103 LQ  104 (109)
Q Consensus       103 ~~  104 (109)
                      .+
T Consensus       140 ~~  141 (151)
T 1w1g_A          140 QR  141 (151)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=7.6e-09  Score=69.03  Aligned_cols=89  Identities=15%  Similarity=0.098  Sum_probs=71.4

Q ss_pred             cccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCe-EEeecCCCC---cccceeeEEEeeCCceEEEEEcCC--------
Q psy4640          19 SVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSY-KISPCSSDD---KVFRKFSFKAEHANMRTYYFAADT--------   86 (109)
Q Consensus        19 ~~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~-~V~~~~~~~---~~~k~~~F~i~~~~~r~y~fsA~s--------   86 (109)
                      ..+++.+-+|...++-+|+++++.++-..|+|... .|+.+....   ....+|||+|.+. ..+||..++.        
T Consensus        22 ~~rKRHYWrLD~K~Itlf~~e~~~k~ykeIpLseIL~v~~~~~~~~~~~~~~phcFEi~T~-~~~y~Vge~~~~~~~~~~  100 (129)
T 2d9z_A           22 NLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEIITD-TMVYFVGENNGDSSHNPV  100 (129)
T ss_dssp             CCCEEEEEEEESSCEEEESCSSCCSCCCEECTTTCCEECCTTCCCCSSSCSCCCSEEEECS-SCEEEECBCCSCCSCCTT
T ss_pred             ccccceeeEecCCeEEEEecCCCCceeceeeHHHhcccccccCccccCCCCCCceEEEEEC-CEEEEEccCCCCCCCCcc
Confidence            45677788999999999999999999999999876 466553321   1234699999875 5899998753        


Q ss_pred             -------HHHHHHHHHHHHHhhhhccCCC
Q psy4640          87 -------RESMIQWMNALSLASILQNSST  108 (109)
Q Consensus        87 -------~~e~~~Wi~aI~~a~~~~~~~~  108 (109)
                             .+.++.|..||++|.++-.+++
T Consensus       101 ~~~sg~g~~~a~~We~aIrqALmP~~~~~  129 (129)
T 2d9z_A          101 LAATGVGLDVAQSWEKAIRQALMSGPSSG  129 (129)
T ss_dssp             TTTTTCBHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             ccccccchHHHHHHHHHHHHhccCCCCCC
Confidence                   7999999999999998877653

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.76  E-value=3.6e-08  Score=66.20  Aligned_cols=81  Identities=11%  Similarity=0.100  Sum_probs=60.8

Q ss_pred             EEeeCCeEEEEcCCC---CCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          26 SIGSRNGLAVTDRFE---EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        26 ~vL~~~~L~yyk~~~---d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      .+|=++.|.|.+-..   .=...|.|||.+..|...++.  ...+++|+|..+..+++.++|.|.+|+++||.+|+.++.
T Consensus        49 l~LF~~~Ll~~s~~~~~~~f~~kgklPL~g~~V~~~ed~--~~~~~aFeI~g~~~~~i~v~~~s~eE~~~Wl~~L~~~i~  126 (132)
T 1v61_A           49 FLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEI--EGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTK  126 (132)
T ss_dssp             EEECSSCEEEEECSSSSSCCEEEEEECTTTCBCSTTCSS--SSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHHT
T ss_pred             EEEcCCeEEEEEecCCCceEEEEEEEecceeEEEecccc--ccCccEEEEecCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence            456666666666332   235779999999988765432  256899999876668999999999999999999999875


Q ss_pred             hccCCCC
Q psy4640         103 LQNSSTG  109 (109)
Q Consensus       103 ~~~~~~~  109 (109)
                      .- +++|
T Consensus       127 ~~-~~~~  132 (132)
T 1v61_A          127 SG-PSSG  132 (132)
T ss_dssp             TS-CSCC
T ss_pred             hc-ccCC
Confidence            43 3544

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.60  E-value=2.1e-07  Score=62.37  Aligned_cols=72  Identities=11%  Similarity=0.018  Sum_probs=58.4

Q ss_pred             CeEEEEcCCCCCcccEEEEcCCe-EEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          31 NGLAVTDRFEEEKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        31 ~~L~yyk~~~d~~p~G~I~L~~~-~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      ..|.||..++..+|+..|++..+ .|....+.+-..+.|.|-|...+.-.|+|.|.++++|+.|+..|+....
T Consensus        58 y~LEfy~PPkssKpK~~i~cs~I~EVR~tt~LEmPD~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~~  130 (136)
T 1v5m_A           58 FRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVD  130 (136)
T ss_dssp             EEEEEESSTTSSSCSSCEETTTCCBCCCCCCSSSCCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEecCCcccCCccccchhhhhhhhhccccccCCccceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhcC
Confidence            67889999999999999999876 3555444333346789999877766999999999999999999987653

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=98.39  E-value=5.8e-06  Score=55.89  Aligned_cols=85  Identities=6%  Similarity=-0.039  Sum_probs=58.6

Q ss_pred             CcccccCCceEEeeCCeEEEE----cC-CCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeC--C---ceEEEEEcC
Q psy4640          16 SRKSVGSDLDSIGSRNGLAVT----DR-FEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA--N---MRTYYFAAD   85 (109)
Q Consensus        16 ~~~~~~~~~~~vL~~~~L~yy----k~-~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~--~---~r~y~fsA~   85 (109)
                      .+|.+.-+-.+.+.|-.||-.    |. ...-...+.++|.|-.|....++   .-+|+|.|..+  +   .+++.|+|+
T Consensus        29 ~~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~e---~~p~~~~l~s~~~G~~~k~~i~~~A~  105 (140)
T 3qwm_A           29 QKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFENQ---YYPNGIRLTSSVPGADIKVLINFNAP  105 (140)
T ss_dssp             CCTTTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECCS---SCTTEEEEEECCTTSCCEEEEEEECS
T ss_pred             ccccccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccCC---CCceEEEEEecCCCCcceEEEEEECC
Confidence            334444443345555555543    11 11235778999999999876553   34889999854  2   488999999


Q ss_pred             CHHHHHHHHHHHHHhhhh
Q psy4640          86 TRESMIQWMNALSLASIL  103 (109)
Q Consensus        86 s~~e~~~Wi~aI~~a~~~  103 (109)
                      |.+|+.+||++|+.|+-.
T Consensus       106 s~~ER~rwi~dL~esI~e  123 (140)
T 3qwm_A          106 NPQDRKKFTDDLRESIAE  123 (140)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999999998743

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=98.37  E-value=5.1e-06  Score=53.94  Aligned_cols=58  Identities=14%  Similarity=0.108  Sum_probs=47.1

Q ss_pred             cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640          43 KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASIL  103 (109)
Q Consensus        43 ~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~  103 (109)
                      +....++|.+..|..+++.  ..-+++|+|.... +++.|+|+|.+|..+||.+|+.|...
T Consensus        51 ~~~~~~~L~~~~v~d~~d~--~~~~n~f~i~~~~-~s~~~~aes~~eK~~Wl~~~~~a~~~  108 (113)
T 1zc3_B           51 RYNALYPLDRLAVVNVKDN--PPMKDMFKLLMFP-ESRIFQAENAKIKREWLEVLEETKRA  108 (113)
T ss_dssp             EEEEEEETTTCEEEEECCB--TTBSSEEEEEETT-EEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcccCEEEECCCC--cccceEEEEEeCC-ceEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            4556889999988776542  2457899998654 79999999999999999999998743

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=98.08  E-value=1.5e-05  Score=61.25  Aligned_cols=76  Identities=16%  Similarity=0.142  Sum_probs=52.3

Q ss_pred             ceEEeeCCeEEEEcCCCCC--cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          24 LDSIGSRNGLAVTDRFEEE--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d~--~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      .+..|=++.|.|-+...+.  ...+.|+|.++.|.....+   ..++.|.|..+. ++|.|+|.|++|+++||++|+.|+
T Consensus       261 r~~fLF~d~Ll~~k~~~~~~y~~k~~i~L~~l~v~~~~~~---~~~~~f~i~~~~-~~~~l~a~s~~ek~~W~~~i~~ai  336 (434)
T 3mpx_A          261 RHLFLMNDVLLYTYPQKDGKYRLKNTLAVANMKVSRPVME---KVPYALKIETSE-SCLMLSASSCAERDEWYGCLSRAL  336 (434)
T ss_dssp             EEEEEESSEEEEEEECTTSCEEEEEEEEC-----CCCCCT---TSCSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHC-
T ss_pred             EEEEEECCEEEEEEecCCCeEEEEEEEEcCCcEEEecCCC---CCCeeEEEecCC-eEEEEecCCHHHHHHHHHHHHHHH
Confidence            4567777788887744332  3568999999988643331   457999997665 789999999999999999999998


Q ss_pred             hh
Q psy4640         102 IL  103 (109)
Q Consensus       102 ~~  103 (109)
                      ..
T Consensus       337 ~e  338 (434)
T 3mpx_A          337 PE  338 (434)
T ss_dssp             --
T ss_pred             HH
Confidence            64

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=98.02  E-value=3.8e-05  Score=57.59  Aligned_cols=77  Identities=14%  Similarity=0.122  Sum_probs=57.1

Q ss_pred             ceEEeeCCeEEEEcCCCC-----------CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy4640          24 LDSIGSRNGLAVTDRFEE-----------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   92 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d-----------~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~   92 (109)
                      .+..|=++.|.+-|....           -...+.|+|.++.|....+.+  .-+++|.|.+.+.+.|.|.|.|.+|.+.
T Consensus       262 ~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~d~~--~~~~~F~i~~~~~~~~~l~a~s~~ek~~  339 (354)
T 1dbh_A          262 RHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTN--EYKHAFEIILKDENSVIFSAKSAEEKNN  339 (354)
T ss_dssp             EEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSS--SCCSEEEECCTTSCCEEEECSSHHHHHH
T ss_pred             EEEEEeCCEEEEEecCCCCCCCCCCCCcceeEEEEEeccceEEEeCCccc--ccCccEEEecCCCCEEEEEeCCHHHHHH
Confidence            345566667766664321           124589999999987764422  3468999987655789999999999999


Q ss_pred             HHHHHHHhhh
Q psy4640          93 WMNALSLASI  102 (109)
Q Consensus        93 Wi~aI~~a~~  102 (109)
                      |+++|+.|..
T Consensus       340 W~~~i~~~~~  349 (354)
T 1dbh_A          340 WMAALISLQY  349 (354)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999999864

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=97.95  E-value=2e-05  Score=56.33  Aligned_cols=53  Identities=28%  Similarity=0.332  Sum_probs=40.1

Q ss_pred             ccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          44 LLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        44 p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      +.|.+.+.... +.....   ..++..|.|.+++ |+|+|+|+|++|+++||.+|+.+
T Consensus       174 ~~g~~~~~~i~s~~~~~~---~~~~~~f~iit~~-r~~~~~a~s~~e~~~Wi~~lq~~  227 (228)
T 3tfm_A          174 AVGTLDVGLIDSVCASDS---PDRPNSFVIITAN-RVLHCNADTPEEMHHWITLLQRS  227 (228)
T ss_dssp             CSEEEEGGGEEEEEECCC---SSCTTEEEEEETT-EEEEEECSSHHHHHHHHHHHCSC
T ss_pred             ccccCChhheeccccCCC---CCCCCcEEEEeCC-ceEEEEcCCHHHHHHHHHHHhhc
Confidence            56888886643 222222   2457789998775 99999999999999999999864

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=97.79  E-value=0.00018  Score=54.94  Aligned_cols=83  Identities=19%  Similarity=0.171  Sum_probs=56.7

Q ss_pred             ceEEeeCCeEEEEcCCCC-CcccEEEEcCCeEEeecCCCC--cccceeeEEEeeC-CceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          24 LDSIGSRNGLAVTDRFEE-EKLLGSILLPSYKISPCSSDD--KVFRKFSFKAEHA-NMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d-~~p~G~I~L~~~~V~~~~~~~--~~~k~~~F~i~~~-~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      .+..|=++.|.+-+...+ -...+.|+|.++.|...++.+  ..+-++.|.|.+. +.+.|.|.|.|++|.++|+++|+.
T Consensus       253 ~~~fLF~d~Ll~~k~k~~~y~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~  332 (406)
T 2vrw_B          253 RYAFLLDKALLICKRRGDSYDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEM  332 (406)
T ss_dssp             EEEEEESSEEEEEEEETTEEEEEEEEETTTEEEEC--------CTTCEEEEEEETTCSCEEEEEESSHHHHHHHHHHHHH
T ss_pred             EEEEecCCEEEEEEecCCceEEEEEecccceeeeecCCCCccCCccceeeEEEecCCCceEEEeCCCHHHHHHHHHHHHH
Confidence            345666666666654322 235689999999887654321  1123589999863 457899999999999999999999


Q ss_pred             hhhhccC
Q psy4640         100 ASILQNS  106 (109)
Q Consensus       100 a~~~~~~  106 (109)
                      |+....+
T Consensus       333 ai~~~~~  339 (406)
T 2vrw_B          333 AISNIYP  339 (406)
T ss_dssp             HHHHHSC
T ss_pred             HHhhhhh
Confidence            9866543

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=97.79  E-value=8.6e-05  Score=53.58  Aligned_cols=82  Identities=15%  Similarity=0.105  Sum_probs=60.7

Q ss_pred             CCcccccCCceEEeeC-----C--eEEEEcCCCC----CcccEEEEcCCe-EEeecCCCCcccceeeEEEeeCCceEEEE
Q psy4640          15 SSRKSVGSDLDSIGSR-----N--GLAVTDRFEE----EKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYYF   82 (109)
Q Consensus        15 ~~~~~~~~~~~~vL~~-----~--~L~yyk~~~d----~~p~G~I~L~~~-~V~~~~~~~~~~k~~~F~i~~~~~r~y~f   82 (109)
                      .++|+|-.+ |+||+.     +  .|..|||..|    .+++.+|.|.++ -++.....+  ++.+++.|...+ .++.|
T Consensus        18 r~~KkWk~r-w~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g~~ld--k~s~TlAIIc~d-~~~vL   93 (224)
T 3ml4_A           18 RDGKKWKSR-WLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYE--GLAHTLAIICLS-QAVML   93 (224)
T ss_dssp             C---CCEEE-EEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEEEEET--TEEEEEEEEESS-CEEEE
T ss_pred             ecCCceeeE-EEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCcccccccc--CcccEEEEEecC-cEEEE
Confidence            344555554 888863     2  4789998876    567899999886 466544432  567899998876 68899


Q ss_pred             EcCCHHHHHHHHHHHHHh
Q psy4640          83 AADTRESMIQWMNALSLA  100 (109)
Q Consensus        83 sA~s~~e~~~Wi~aI~~a  100 (109)
                      ++|++++|..|-..|+..
T Consensus        94 AFds~e~l~~W~~~l~~s  111 (224)
T 3ml4_A           94 GFDSHEAMCAWDTRIRYA  111 (224)
T ss_dssp             ECSSHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHhhc
Confidence            999999999999999864

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=97.75  E-value=6.4e-05  Score=56.17  Aligned_cols=81  Identities=16%  Similarity=0.181  Sum_probs=56.7

Q ss_pred             cCCceEEeeCCeEEEEcCCCCC-c-----ccEEEEcCCeEEeecCCCCc-------------ccceeeEEEeeC---Cce
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEE-K-----LLGSILLPSYKISPCSSDDK-------------VFRKFSFKAEHA---NMR   78 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~-~-----p~G~I~L~~~~V~~~~~~~~-------------~~k~~~F~i~~~---~~r   78 (109)
                      |+..+..|=++.|.+-+..... .     ..+.|+|.++.|+...+.+.             ...+++|.|.+.   ..+
T Consensus       243 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~g~~~~~~~~~~~F~i~~~~~~~~~  322 (346)
T 2z0q_A          243 GVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSNNERVKNFFRVSFKNGSQSQ  322 (346)
T ss_dssp             SCEEEEEEESSEEEEEEEEEETTEEEEEESSCCEEGGGCEEEECCTTTSCCCSCC--CCSHHHHTSSEEEEEECCGGGCE
T ss_pred             CcEEEEEECCCcEEEEEEeccCCceeeeeecCCcchhhceeeecCCCccccCccccccccCCcccccceEEEEecCCCCc
Confidence            3445666777777776643211 1     35789999998877654210             023578999753   357


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          79 TYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        79 ~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      .|.|+|.|.+|.+.||++|+.|+
T Consensus       323 ~~~l~a~s~~ek~~W~~~i~~ai  345 (346)
T 2z0q_A          323 THSLQANDTFNKQQWLNCIRQAK  345 (346)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHHhh
Confidence            99999999999999999999985

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=97.74  E-value=0.00022  Score=46.98  Aligned_cols=80  Identities=6%  Similarity=-0.046  Sum_probs=53.5

Q ss_pred             ceEEeeCCe-EEEEcCC--CCCcccEEEEcCCeE-EeecCCC-C------cccceeeEEEeeCCc-eEEEEEcCCHHHHH
Q psy4640          24 LDSIGSRNG-LAVTDRF--EEEKLLGSILLPSYK-ISPCSSD-D------KVFRKFSFKAEHANM-RTYYFAADTRESMI   91 (109)
Q Consensus        24 ~~~vL~~~~-L~yyk~~--~d~~p~G~I~L~~~~-V~~~~~~-~------~~~k~~~F~i~~~~~-r~y~fsA~s~~e~~   91 (109)
                      ..++|.++. ++||.+.  ......+.|+|.+.. |...... +      ......||.|...+. ++..|.|+|++|++
T Consensus        31 r~f~l~~~~~~~w~~s~~~~~~~~~~~i~i~~I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy~~~~k~LdlvA~s~~e~~  110 (131)
T 1mai_A           31 RFYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQ  110 (131)
T ss_dssp             EEEEECTTSSEEEECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCCCEEEECSSHHHHH
T ss_pred             EEEEECCCCCEEEeCCcCCCCCCcCcEEEHhhhHHHHCCCCCHHHHhhhhcCCccceEEEEECCCCceEEEEeCCHHHHH
Confidence            345666544 5555422  134578999998874 5443210 0      112457999987653 79999999999999


Q ss_pred             HHHHHHHHhhhh
Q psy4640          92 QWMNALSLASIL  103 (109)
Q Consensus        92 ~Wi~aI~~a~~~  103 (109)
                      .|+..|+.....
T Consensus       111 ~Wv~gL~~L~~~  122 (131)
T 1mai_A          111 HWVQGLRKIIHH  122 (131)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999986543

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=97.69  E-value=0.00012  Score=54.07  Aligned_cols=78  Identities=6%  Similarity=0.060  Sum_probs=54.7

Q ss_pred             CCceEEeeCCeEEEEcCCCCC------cccEEEEcCCeEEeecCCCCcccceeeEEEeeC----CceEEEEEcCCHHHHH
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEE------KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA----NMRTYYFAADTRESMI   91 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~------~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~----~~r~y~fsA~s~~e~~   91 (109)
                      +..+..|=++.|.+-+...+.      ...+.|+|.++.|....+.    .++.|.|...    ....|.|+|.|.+|++
T Consensus       222 ~~r~~fLF~d~Ll~~k~~~~~~~~~~y~~k~~i~l~~~~v~e~~~~----~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~  297 (311)
T 1nty_A          222 RERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEG----DPCKFALWVGRTPTSDNKIVLKASSIENKQ  297 (311)
T ss_dssp             EEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCCTT----CTTEEEEEESSSCCTTTCEEEECSSHHHHH
T ss_pred             ceeEEEeccCeEEEEEeeccCCCCceeEEeeeeeccceeeEEccCC----CCceEEEEeCCCCCCCceEEEECCCHHHHH
Confidence            344556666677666532211      2468899999988754332    2567888651    3467999999999999


Q ss_pred             HHHHHHHHhhhh
Q psy4640          92 QWMNALSLASIL  103 (109)
Q Consensus        92 ~Wi~aI~~a~~~  103 (109)
                      .|+++|+.|+..
T Consensus       298 ~W~~~i~~~i~e  309 (311)
T 1nty_A          298 DWIKHIREVIQE  309 (311)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=97.68  E-value=0.00045  Score=53.64  Aligned_cols=79  Identities=10%  Similarity=0.050  Sum_probs=56.8

Q ss_pred             eEEeeCCeEEEEcCCCC----CcccEEEEcCCeEEeecCCCCc----ccceeeEEEeeCC-ceEEEEEcCCHHHHHHHHH
Q psy4640          25 DSIGSRNGLAVTDRFEE----EKLLGSILLPSYKISPCSSDDK----VFRKFSFKAEHAN-MRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        25 ~~vL~~~~L~yyk~~~d----~~p~G~I~L~~~~V~~~~~~~~----~~k~~~F~i~~~~-~r~y~fsA~s~~e~~~Wi~   95 (109)
                      +..|=++.|.+-|....    -...+.|+|.++.|....+.+.    ..-+++|+|.... .+.|.|+|.|.+|.+.||+
T Consensus       354 ~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~eK~~W~~  433 (466)
T 2pz1_A          354 MFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLK  433 (466)
T ss_dssp             EEEEETTEEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCSSCCCBCEEEEEECSSSCCEEEEEESSHHHHHHHHH
T ss_pred             EEEEECCEEEEEEeccccCCceEEeeeeeccceEEEeCCCCcccccccccceeEEEEeCCCCeEEEEEeCCHHHHHHHHH
Confidence            45666777776664321    1346899999998876544221    1235789997642 5799999999999999999


Q ss_pred             HHHHhhhh
Q psy4640          96 ALSLASIL  103 (109)
Q Consensus        96 aI~~a~~~  103 (109)
                      +|+.|...
T Consensus       434 ~i~~a~~~  441 (466)
T 2pz1_A          434 AFAREREQ  441 (466)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=97.67  E-value=0.00033  Score=53.51  Aligned_cols=78  Identities=19%  Similarity=0.183  Sum_probs=54.6

Q ss_pred             ceEEeeCCeEEEEcCCCCC------------------cccEEEEcCCeEEeecCCCCcccceeeEEEeeCC----ceEEE
Q psy4640          24 LDSIGSRNGLAVTDRFEEE------------------KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN----MRTYY   81 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d~------------------~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~----~r~y~   81 (109)
                      .+..|=+++|.+-+...++                  ...+.|+|.++.|..+...     ...|.|....    .++|.
T Consensus       313 ~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~~~~-----~~~f~l~~~~~~~~~~~~~  387 (418)
T 3t06_A          313 LHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATD-----KRAFFIICTSKLGPPQIYE  387 (418)
T ss_dssp             EEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSSC-----SSEEEEEECCSSSTTCEEE
T ss_pred             EEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceecccccc-----CceEEEEecCCCCCceEEE
Confidence            4567777777777643221                  1236899999888754331     3467776432    37999


Q ss_pred             EEcCCHHHHHHHHHHHHHhhhhccC
Q psy4640          82 FAADTRESMIQWMNALSLASILQNS  106 (109)
Q Consensus        82 fsA~s~~e~~~Wi~aI~~a~~~~~~  106 (109)
                      |+|.|.+|.+.||++|+.|+..-.+
T Consensus       388 l~A~s~~ek~~W~~~I~~a~~~~~~  412 (418)
T 3t06_A          388 LVALTSSDKNTWMELLEEAVRNAHH  412 (418)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHTC--
T ss_pred             EEcCCHHHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999876544

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=97.60  E-value=0.00026  Score=53.34  Aligned_cols=79  Identities=9%  Similarity=0.050  Sum_probs=55.4

Q ss_pred             CCceEEeeCCeEEEEcCCCC---------CcccEEEEcCCeEEeecCCCCcccceeeEEEeeC----CceEEEEEcCCHH
Q psy4640          22 SDLDSIGSRNGLAVTDRFEE---------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA----NMRTYYFAADTRE   88 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d---------~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~----~~r~y~fsA~s~~   88 (109)
                      +..+..|=+++|.+=+...+         -...+.|+|..+.|....+    ..++.|.|...    +...|.|.|.|.+
T Consensus       229 ~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~----~~~~~F~i~~~~~~~~~~~~~l~a~s~~  304 (354)
T 2rgn_B          229 RERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQ----GDPCRFALTSRGPEGGIQRYVLQAADPA  304 (354)
T ss_dssp             CEEEEEEESSEEEEEEECC--------CCEEEEEEEEGGGEEEEESGG----GCTTEEEEEEECSSSCEEEEEEEESSHH
T ss_pred             ceEEEEEeCCcEEEEEeccCCCCCCCCCceEEcceeeccceeeeeccC----CCCceEEEEecCCCCCceEEEEECCCHH
Confidence            44456666777776653321         1245789999888765322    22568888652    2579999999999


Q ss_pred             HHHHHHHHHHHhhhhc
Q psy4640          89 SMIQWMNALSLASILQ  104 (109)
Q Consensus        89 e~~~Wi~aI~~a~~~~  104 (109)
                      +.+.|+++|+.|+..+
T Consensus       305 ek~~W~~~i~~ai~~~  320 (354)
T 2rgn_B          305 ISQAWIKHVAQILESQ  320 (354)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988654

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=97.60  E-value=0.00034  Score=52.67  Aligned_cols=77  Identities=17%  Similarity=0.122  Sum_probs=54.0

Q ss_pred             ceEEeeCCeEEEEcCCCC------C----cccEEEEcCCeEEeecCCCCcccceeeEEEeeC-CceEEEEEcCCHHHHHH
Q psy4640          24 LDSIGSRNGLAVTDRFEE------E----KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA-NMRTYYFAADTRESMIQ   92 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d------~----~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~-~~r~y~fsA~s~~e~~~   92 (109)
                      .+..|=++.|.+-|....      .    ...+.|+|.++.|....+    ..+++|.|... ..+.|.|+|.|.++.+.
T Consensus       240 r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~~~----~~~~~F~i~~~~~~~~~~l~a~s~~ek~~  315 (353)
T 1kz7_A          240 RHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVK----GDTKKFEIWYNAREEVYIIQAPTPEIKAA  315 (353)
T ss_dssp             EEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBT----TBTTEEEEEETTTTEEEEEECSSHHHHHH
T ss_pred             eEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEcCC----CCCceEEEEECCCCcEEEEECCCHHHHHH
Confidence            345566666666653321      1    235789999888765433    22578998753 35799999999999999


Q ss_pred             HHHHHHHhhhhc
Q psy4640          93 WMNALSLASILQ  104 (109)
Q Consensus        93 Wi~aI~~a~~~~  104 (109)
                      |+++|+.|+..+
T Consensus       316 W~~~i~~ai~~~  327 (353)
T 1kz7_A          316 WVNAIRKVLTSQ  327 (353)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987654

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=97.59  E-value=0.00051  Score=51.57  Aligned_cols=74  Identities=20%  Similarity=0.200  Sum_probs=52.0

Q ss_pred             ceEEeeCCeEEEEcCCCCC------------------cccEEEEcCCeEEeecCCCCcccceeeEEEeeC---C-ceEEE
Q psy4640          24 LDSIGSRNGLAVTDRFEEE------------------KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA---N-MRTYY   81 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d~------------------~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~---~-~r~y~   81 (109)
                      .+..|=++.|.+-+...++                  ...+.|+|.++.|..... +    +.+|.|.+.   + .+.|.
T Consensus       271 ~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~-~----~~~f~i~~~~~~g~~~~~~  345 (368)
T 1xcg_A          271 LHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT-D----KRAFFIICTSKLGPPQIYE  345 (368)
T ss_dssp             EEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSS-C----SSEEEEEECCSSSTTCEEE
T ss_pred             EEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeecccC-C----CceEEEEEecCCCCceEEE
Confidence            4556667777666543211                  125789999988876432 1    346776543   2 47999


Q ss_pred             EEcCCHHHHHHHHHHHHHhhh
Q psy4640          82 FAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        82 fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      |+|.|.+|.+.|+++|+.|+.
T Consensus       346 l~a~s~~ek~~W~~~i~~ai~  366 (368)
T 1xcg_A          346 LVALTSSDKNTWMELLEEAVR  366 (368)
T ss_dssp             EECSSHHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999874

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=97.58  E-value=0.00014  Score=50.78  Aligned_cols=55  Identities=13%  Similarity=0.082  Sum_probs=41.0

Q ss_pred             EEEEcCCeEEeecCCCCcccceeeEEEee--CCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640          46 GSILLPSYKISPCSSDDKVFRKFSFKAEH--ANMRTYYFAADTRESMIQWMNALSLASILQ  104 (109)
Q Consensus        46 G~I~L~~~~V~~~~~~~~~~k~~~F~i~~--~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~  104 (109)
                      ..|+|.++.|......   . +..|-|..  .+.+.|.|.|.|.+|++.||++|..|+...
T Consensus       118 pvi~L~~~~vre~a~d---~-~~~fli~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~  174 (185)
T 2lg1_A          118 TVISLKKLIVREVAHE---E-KGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTL  174 (185)
T ss_dssp             SEEESSSCEEECCSSC---S-SEEEEECCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CeEeecceEEeccCCC---C-CeEEEEEecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhC
Confidence            6789999988765431   1 22344432  246899999999999999999999998665

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.58  E-value=0.00064  Score=56.71  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=60.3

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCC-------ceEEEEEcCCHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-------MRTYYFAADTRESMIQW   93 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~-------~r~y~fsA~s~~e~~~W   93 (109)
                      .+.+|+||+...|.||||++++.-+-.++|.+..+...... ...+++.|.|-.+.       .+..-++|+|.++.+.|
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  636 (772)
T 3zvr_A          558 SKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKG-FMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSW  636 (772)
T ss_dssp             CCEEEEEEESSEEEEESSTTCCCEEEEEECTTEEEEEC--------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHH
T ss_pred             Cccceeeccccccccccchhhhcccccccccccccchhhhc-cccccccccccCCccccccchhhhhhhhccccccchhh
Confidence            34578999999999999988888888999999888766543 23567889986544       45778999999999999


Q ss_pred             HHHHHHh
Q psy4640          94 MNALSLA  100 (109)
Q Consensus        94 i~aI~~a  100 (109)
                      .+.+-+|
T Consensus       637 ~~~~~~~  643 (772)
T 3zvr_A          637 KASFLRA  643 (772)
T ss_dssp             HHHHHHT
T ss_pred             HHhhhhc
Confidence            9998443

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=97.56  E-value=0.0004  Score=55.66  Aligned_cols=82  Identities=20%  Similarity=0.169  Sum_probs=56.3

Q ss_pred             eEEeeCCeEEEEcCCCC-CcccEEEEcCCeEEeecCCCC--cccceeeEEEeeCC-ceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          25 DSIGSRNGLAVTDRFEE-EKLLGSILLPSYKISPCSSDD--KVFRKFSFKAEHAN-MRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        25 ~~vL~~~~L~yyk~~~d-~~p~G~I~L~~~~V~~~~~~~--~~~k~~~F~i~~~~-~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      +..|=++.|.|-|...+ -...+.|+|.++.|......+  ..+-++.|.|.+.. .+.|.|.|.|.+|+++||++|+.|
T Consensus       426 ~~fLF~d~Ll~~k~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~~~~~~~~L~A~S~eeK~~Wi~~I~~a  505 (587)
T 3ky9_A          426 YAFLLDKALLICKRRGDSYDLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMA  505 (587)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEEEGGGEEEEEC-----CCCTTCEEEEEEETTC---CEEEESSHHHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEecCCEEEeeeeechhhceeeecCCCCcccccccceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence            45666667666664322 246789999999987654422  12346889998753 479999999999999999999999


Q ss_pred             hhhccC
Q psy4640         101 SILQNS  106 (109)
Q Consensus       101 ~~~~~~  106 (109)
                      +....+
T Consensus       506 i~~~~~  511 (587)
T 3ky9_A          506 ISNIYP  511 (587)
T ss_dssp             HHHHSC
T ss_pred             hhhhcc
Confidence            866544

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=97.54  E-value=0.00043  Score=53.03  Aligned_cols=79  Identities=16%  Similarity=0.154  Sum_probs=55.8

Q ss_pred             eEEeeCCeEEEEcCCCC----CcccEEEEcCCeEEeecCCCCc----ccceeeEEEeeC-CceEEEEEcCCHHHHHHHHH
Q psy4640          25 DSIGSRNGLAVTDRFEE----EKLLGSILLPSYKISPCSSDDK----VFRKFSFKAEHA-NMRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        25 ~~vL~~~~L~yyk~~~d----~~p~G~I~L~~~~V~~~~~~~~----~~k~~~F~i~~~-~~r~y~fsA~s~~e~~~Wi~   95 (109)
                      +..|=++.|.+=|....    -...+.|+|.++.|....+.+.    ..-+++|+|... ..+.|.|+|.|.+|.+.||+
T Consensus       277 ~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~~~~~~~l~a~s~~eK~~Wi~  356 (402)
T 2dfk_A          277 VFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLR  356 (402)
T ss_dssp             EEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEESSSSCEEEEECSSHHHHHHHHH
T ss_pred             EEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCCccccccccceeEEEEECCCCeEEEEEeCCHHHHHHHHH
Confidence            45666667766664321    1356899999998876544211    112478999764 35799999999999999999


Q ss_pred             HHHHhhhh
Q psy4640          96 ALSLASIL  103 (109)
Q Consensus        96 aI~~a~~~  103 (109)
                      +|+.|...
T Consensus       357 ~i~~a~~~  364 (402)
T 2dfk_A          357 AFREERKM  364 (402)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987643

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=97.52  E-value=0.00048  Score=50.67  Aligned_cols=56  Identities=14%  Similarity=0.097  Sum_probs=44.9

Q ss_pred             cEEEEcCCeEEeecCC-CCcccceeeEEEeeC-CceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          45 LGSILLPSYKISPCSS-DDKVFRKFSFKAEHA-NMRTYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        45 ~G~I~L~~~~V~~~~~-~~~~~k~~~F~i~~~-~~r~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      .+.|+|.-|.+..... .|  ++.++|+|..+ +..+.+|.|+|.+++.+|+++|..++.
T Consensus       205 ~~~ipL~m~~~tR~~~~~d--~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i~  262 (263)
T 1z87_A          205 AKHVSLKMAYVSRRCTPTD--PEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  262 (263)
T ss_dssp             CEEEESSSEEEEEECCSSC--SSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             ccccCcceeeeeeeccccC--CCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence            4789999998765322 23  36899999876 556799999999999999999998763

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=97.51  E-value=1.4e-05  Score=62.35  Aligned_cols=57  Identities=18%  Similarity=0.233  Sum_probs=0.0

Q ss_pred             cEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640          45 LGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQ  104 (109)
Q Consensus        45 ~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~  104 (109)
                      .+.|+|.+..|....+.  ...+++|.|..++ ++|.|+|.|.+|++.|+++|+.|+...
T Consensus       308 k~~i~l~~~~v~~~~d~--~~~~~~F~i~~~~-~~~~l~a~s~~ek~~W~~~i~~ai~~~  364 (510)
T 3jzy_A          308 KTPIFLNEVLVKLPTDP--SSDEPVFHISHID-RVYTLRTDNINERTAWVQKIKAASEQY  364 (510)
T ss_dssp             ------------------------------------------------------------
T ss_pred             cCceehhheEEeccCCC--Cccccceeeeccc-eeEEeccCCHHHHHHHHHHHHHHHHHH
Confidence            46788888877665332  2457899998765 799999999999999999999988654

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=97.50  E-value=0.00062  Score=51.53  Aligned_cols=56  Identities=16%  Similarity=0.189  Sum_probs=42.3

Q ss_pred             cEEEEcCCeEEeecCCCCcccceeeEEEee--CCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640          45 LGSILLPSYKISPCSSDDKVFRKFSFKAEH--ANMRTYYFAADTRESMIQWMNALSLASILQ  104 (109)
Q Consensus        45 ~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~--~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~  104 (109)
                      .+.|+|.++.|..+.. +   .+..|.|..  .+.+.|.|+|.|.+|.+.||++|+.|+...
T Consensus       314 ~~~i~l~~~~v~~~~~-d---~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~  371 (385)
T 1txd_A          314 SPVIKLSTVLVRQVAT-D---NKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASV  371 (385)
T ss_dssp             CSEEEGGGEEEEECCC-----CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCceeccccccccccc-C---CceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            5789999988876533 1   134555543  346899999999999999999999988654

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=97.37  E-value=0.0015  Score=49.22  Aligned_cols=60  Identities=12%  Similarity=0.089  Sum_probs=44.2

Q ss_pred             ccEEEEcCCeEEeecCCCCcccceeeEEEee-------CCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640          44 LLGSILLPSYKISPCSSDDKVFRKFSFKAEH-------ANMRTYYFAADTRESMIQWMNALSLASILQ  104 (109)
Q Consensus        44 p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~-------~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~  104 (109)
                      ..+.|+|.++.|....+.+. .....|.|.+       ...+.|.|+|.|.+|.++||++|..|+...
T Consensus       302 ~k~~i~l~~~~v~~~~~~~~-~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~~~  368 (377)
T 1foe_A          302 FRHMIPTEALQVRALPSADA-EANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRDK  368 (377)
T ss_dssp             CEEEEEGGGEEEECCCCTTT-TSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             EeeeccccceEEEecCCCcc-chhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhhHH
Confidence            45889999999877654332 1123477752       124799999999999999999999988553

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=97.35  E-value=0.00068  Score=57.99  Aligned_cols=79  Identities=14%  Similarity=0.130  Sum_probs=58.6

Q ss_pred             CCceEEeeCCeEEEEcCCCC-----------CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHH
Q psy4640          22 SDLDSIGSRNGLAVTDRFEE-----------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESM   90 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d-----------~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~   90 (109)
                      +..+..|=++.|.+-|....           -...+.|+|.++.|....+.+  .-+++|.|.+.+...|.|.|.|.+|+
T Consensus       457 ~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~~d~~--~~~~~F~I~~~~~~~~~L~A~S~eeK  534 (1049)
T 3ksy_A          457 HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTN--EYKHAFEIILKDENSVIFSAKSAEEK  534 (1049)
T ss_dssp             SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCCCSS--SCCSEEEECCTTSCCEEEECSSHHHH
T ss_pred             ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEECCCCc--cccceEEEEcCCCCEEEEeCCCHHHH
Confidence            34456677777777764422           245689999998876654432  34689999876667999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy4640          91 IQWMNALSLASI  102 (109)
Q Consensus        91 ~~Wi~aI~~a~~  102 (109)
                      ++||++|+.+..
T Consensus       535 ~~Wi~~I~~~q~  546 (1049)
T 3ksy_A          535 NNWMAALISLQY  546 (1049)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987653

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=97.34  E-value=0.00087  Score=53.37  Aligned_cols=57  Identities=14%  Similarity=0.139  Sum_probs=42.3

Q ss_pred             EEEEcCCeEEeecCCCCcccceeeEEEee---CCceEEEEEcCCHHHHHHHHHHHHHhhhhccCC
Q psy4640          46 GSILLPSYKISPCSSDDKVFRKFSFKAEH---ANMRTYYFAADTRESMIQWMNALSLASILQNSS  107 (109)
Q Consensus        46 G~I~L~~~~V~~~~~~~~~~k~~~F~i~~---~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~~~~  107 (109)
                      ..|+|.++.|+.+..+     ...|.+..   .+.+.|.|.|.|.+|++.||++|+.|+......
T Consensus       470 ~~i~L~~l~v~e~~~d-----~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~~~  529 (536)
T 3odw_A          470 PVLRLTSAMTREVATD-----HKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKVP  529 (536)
T ss_dssp             SEEEGGGEEEEECTTC-----TTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTSCCC
T ss_pred             ceeecccceeeccccc-----CCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCCCc
Confidence            4799999988775442     12344433   245799999999999999999999998765543

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=97.09  E-value=0.0023  Score=48.02  Aligned_cols=55  Identities=15%  Similarity=0.120  Sum_probs=41.2

Q ss_pred             EEEEcCCeEEeecCCCCcccceeeEEEee--CCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640          46 GSILLPSYKISPCSSDDKVFRKFSFKAEH--ANMRTYYFAADTRESMIQWMNALSLASILQ  104 (109)
Q Consensus        46 G~I~L~~~~V~~~~~~~~~~k~~~F~i~~--~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~  104 (109)
                      ..|+|.+..|+.+..+    ....|.+..  .+.+.|.|.|.|.+|.+.||++|+.|+...
T Consensus       317 ~~i~l~~~~v~e~~~~----~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~~  373 (377)
T 3p6a_A          317 PVLRLTSAMTREVATD----HKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSL  373 (377)
T ss_dssp             SEEEGGGEEEEECTTC----TTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred             CeEechhhhccccccc----cceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhc
Confidence            4799998888765442    123344433  356789999999999999999999998654

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1

Probab=96.00  E-value=0.035  Score=38.67  Aligned_cols=55  Identities=15%  Similarity=0.128  Sum_probs=43.3

Q ss_pred             cEEEEcCCeEEeec-CCCCcccceeeEEEeeC-CceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          45 LGSILLPSYKISPC-SSDDKVFRKFSFKAEHA-NMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        45 ~G~I~L~~~~V~~~-~~~~~~~k~~~F~i~~~-~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      ...|||.=|.|..- ...|  ++..+|+|..+ +..+-.|.|.+..+++.|+++|...+
T Consensus       120 ~~~IPLkMayvtR~~~~tD--~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni  176 (178)
T 2adz_A          120 AKHVSLKMAYVSRRCTPTD--PEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI  176 (178)
T ss_dssp             CEEEETTTCEEEEECCSSC--CSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred             ceeecHHHHHHHHhccCCC--CCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhc
Confidence            47899998887653 2233  25679999765 45688999999999999999998865

>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1

Probab=93.20  E-value=0.053  Score=35.17  Aligned_cols=55  Identities=16%  Similarity=0.218  Sum_probs=40.1

Q ss_pred             ccEEEEcCCeEEeecCCCCcccceeeEEEeeCC-ceEEEE--EcCCHH-HHHHHHHHHHHhh
Q psy4640          44 LLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-MRTYYF--AADTRE-SMIQWMNALSLAS  101 (109)
Q Consensus        44 p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~-~r~y~f--sA~s~~-e~~~Wi~aI~~a~  101 (109)
                      -+..|.|+++.|+....+   +.+..|+|..++ ...|.+  +|.|.+ ..+.|++.|+.+.
T Consensus        53 ~K~~ikl~~~~lte~~~~---~d~~kFeiw~~~~~~~~il~~qA~s~e~~K~~Wv~~I~~~~  111 (119)
T 1fho_A           53 HYSSIRLDKYNIRQHTTD---EDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQ  111 (119)
T ss_dssp             SCCEEESSSCEEEEECTT---CCEEEEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCC
T ss_pred             EeeEEeeceeEEEecCCC---CCCcEEEEccCCCCceEEEeeecCCcHHHHHHHHHHHHHHH
Confidence            346899998888654331   124569986544 456777  899999 9999999999843

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=89.89  E-value=2.8  Score=34.54  Aligned_cols=69  Identities=12%  Similarity=0.131  Sum_probs=48.0

Q ss_pred             EeeCCeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          27 IGSRNGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        27 vL~~~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      .|..+.|-+..+.  ..+...+.++... |....    .+..++|.+...+.++|++.++|..++.+|.++|+.+-
T Consensus       582 ~l~p~r~e~~~e~--~~~~~l~~~~~v~~v~k~~----i~~~~~l~~~~k~~k~f~~~t~~~~~~~~W~~~i~~~~  651 (689)
T 3v5w_A          582 YLFPNRLEWRGEG--EAPQSLLTMEEIQSVEETQ----IKERKCLLLKIRGGKQFILQCDSDPELVQWKKELRDAY  651 (689)
T ss_dssp             EEETTEEEEECTT--SCCCEEEEGGGEEEEEEEE----SSSCEEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccCCCcccccccC--CCCcceeeeccccccccCc----CCCCcceeeeecCCcEEEEECCChHHHHHHHHHHHHHH
Confidence            4455555555432  4555667776643 32221    23457899888888999999999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	109
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	7e-12
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	2e-09
d2coca1	99	b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain cont	2e-08
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	3e-08
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	1e-07
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	2e-07
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	2e-07
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	3e-07
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	4e-07
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	4e-07
d1btna_	106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	5e-07
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	5e-07
d2dyna_	111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	3e-06
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	3e-06
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	4e-06
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	5e-06
d1qqga1	103	b.55.1.2 (A:12-114) Insulin receptor substrate 1,	6e-06
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	8e-06
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	2e-05
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	2e-05
d1v5pa_	126	b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId:	3e-05
d1wjma_	123	b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens),	4e-05
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	6e-05
d2fjla1	101	b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phosph	6e-05
d2elba2	101	b.55.1.1 (A:274-374) DCC-interacting protein 13-al	1e-04
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	1e-04
d1unqa_	118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	2e-04
d1wgqa_	109	b.55.1.1 (A:) FYVE, RhoGEF and PH domain containin	4e-04
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	8e-04
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	0.001
d2cofa1	95	b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens)	0.002

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 7e-12
 Identities = 32/62 (51%), Positives = 38/62 (61%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
            EE +LGS+LLPSY I P        R+F+F AEH  MRTY  AADT E +  W+ AL  
Sbjct: 45  REESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGR 104

Query: 100 AS 101
           AS
Sbjct: 105 AS 106

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 2e-09
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 45  LGSILLPSYKISPCSSDDKV---FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101
           LG+I L    ++   S+        +  F+   A+   Y+  A T +   +W+ A+ +AS
Sbjct: 44  LGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 103

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 2e-08
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 37  DRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96
              ++ +L  +I LPS K+S    ++++     +K + A   ++Y +A + E   QW+  
Sbjct: 35  GGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQ-SWYLSASSAELQQQWLET 93

Query: 97  LSLAS 101
           LS A+
Sbjct: 94  LSTAA 98

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (111), Expect = 3e-08
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 29  SRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVF-RKFSFKAEHANMRTYYFAADTR 87
           S+         ++++  G   +  Y +   ++  K   +   F+    + R Y F A + 
Sbjct: 132 SKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASP 191

Query: 88  ESMIQWMNALSLA 100
           +   +W+  L   
Sbjct: 192 KDAEEWVQQLKFI 204

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.5 bits (104), Expect = 1e-07
 Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 6/79 (7%)

Query: 29  SRNGLAVTDRFEEEKLLGSILLPSYKISPCS------SDDKVFRKFSFKAEHANMRTYYF 82
               ++     +  K    +                 + D   +K   + + AN   +  
Sbjct: 40  KAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLL 99

Query: 83  AADTRESMIQWMNALSLAS 101
            A     M QW+ +L   S
Sbjct: 100 QAHDDTEMSQWVTSLKAQS 118

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 2e-07
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 37  DRFEEEKLLGSILLPSYKISPCSSDDKVF------RKFSFKAEHANMRTYYFAADTRESM 90
              EE + +G   L    +S    +          +   FK    +   YY  A ++   
Sbjct: 46  PSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAER 105

Query: 91  IQWMNALSLAS 101
            +W+ A+   +
Sbjct: 106 AEWIEAIKKLT 116

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 2e-07
 Identities = 17/76 (22%), Positives = 28/76 (36%)

Query: 29  SRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRE 88
             N +       E++ L  I L             +  + +        RT+Y  AD+ E
Sbjct: 27  DENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYVQADSPE 86

Query: 89  SMIQWMNALSLASILQ 104
            M  W+ A+S A + Q
Sbjct: 87  EMHSWIKAVSGAIVAQ 102

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.3 bits (101), Expect = 3e-07
 Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 2/71 (2%)

Query: 40  EEEKLLGSILLPSYKISPC-SSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
           +  +   SI L +          +   +  +F  +  N   Y            W+  + 
Sbjct: 67  KASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQ 126

Query: 99  LASILQNSSTG 109
              +    S+G
Sbjct: 127 GC-VDSGPSSG 136

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 4e-07
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 31  NGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESM 90
           +G+    +  +    G I L    ++     D   R F FK      + ++F A   E  
Sbjct: 31  DGIEFYKKKSDNSPKGMIPLKGSTLT-SPCQDFGKRMFVFKITTTKQQDHFFQAAFLEER 89

Query: 91  IQWMNALSLA 100
             W+  ++ A
Sbjct: 90  DAWVRDINKA 99

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 4e-07
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 8/88 (9%)

Query: 29  SRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFK-------AEHANMRTYY 81
               L      E+ K  G + LP   I   +++ +   KF F+              +Y 
Sbjct: 32  RAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYV 91

Query: 82  FAADTRESMIQWMNALSLASILQNSSTG 109
             A ++  M +W+  L         S+G
Sbjct: 92  LMASSQAEMEEWVKFLRRV-AGSGPSSG 118

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 5e-07
 Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 44  LLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
               + L            K  +K  FK   ++   Y F A   E M  W+ A+S A
Sbjct: 52  SEVPVSLKEAICEVALDYKK--KKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.6 bits (99), Expect = 5e-07
 Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 30  RNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRK-FSFKAEHANMRTYYFAADTRE 88
           +         ++++  G   +  Y +   ++  K  +K   F+    + R Y F A + +
Sbjct: 38  KTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPK 97

Query: 89  SMIQWMNALSLA 100
              +W+  L   
Sbjct: 98  DAEEWVQQLKFI 109

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-06
 Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 7/53 (13%)

Query: 58  CSSDDKVFRKFSFKAEHANM-------RTYYFAADTRESMIQWMNALSLASIL 103
                 +  K  F   +          R    A +T+E +  W  +   A + 
Sbjct: 57  DVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVY 109

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-06
 Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 27/102 (26%)

Query: 31  NGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-------------- 76
             L +    +  + +G++LL + +I    S       F FK  H                
Sbjct: 33  GVLLIYKTQKNGQWVGTVLLNACEIIERPSKK---DGFCFKLFHPLEQSIWAVKGPKGEA 89

Query: 77  ---------MRTYYFAADTRESMIQWMNALSLASILQNSSTG 109
                           A +      WM+AL LA +    S+G
Sbjct: 90  VGSITQPLPSSYLIIRATSESDGRCWMDALELA-LKSGPSSG 130

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 4e-06
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 19/96 (19%)

Query: 29  SRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVF------------------RKFSF 70
           + N L   +   +++  G I L +  I       K                     +   
Sbjct: 29  TDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADG 88

Query: 71  KAEHANMRTYYFAADTRESMIQWMNALSLASILQNS 106
           +    N   Y  +A + E   +WM ++  ASI ++ 
Sbjct: 89  RVVEGNHVVYRISAPSPEEKEEWMKSIK-ASISRDP 123

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 5e-06
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 50  LPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
           L   + S    D    R   F       RT+Y  A T     +W+  L   
Sbjct: 47  LDLTECSAVQFDYSQERVNCFCLVFPF-RTFYLCAKTGVEADEWIKILRWK 96

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 6e-06
 Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 46  GSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
            SI L S       +D K   K      +     +  AAD+      W  AL 
Sbjct: 51  RSIPLESCFNINKRADSK--NKHLVA-LYTRDEHFAIAADSEAEQDSWYQALL 100

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 8e-06
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 28  GSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRK----FSFKAEHANMRTYYFA 83
            +++ L   D   + +  G I L   +     +      K     +F       R Y F 
Sbjct: 33  KTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFC 92

Query: 84  ADTRESMIQWMNALSLASILQNSSTG 109
           A    S  QW++ +  + +    S+G
Sbjct: 93  AQDVPSAQQWVDRIQ-SCLSSGPSSG 117

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 2e-05
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 29  SRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKF-SFKAEHANMRTYYFAADTR 87
           SR         + ++  G+ L+  Y +       +  +K   F+    + RTY F A + 
Sbjct: 29  SRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSP 88

Query: 88  ESMIQWMNALSLA 100
                W++ +S  
Sbjct: 89  AEARDWVDQISFL 101

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-05
 Identities = 12/66 (18%), Positives = 25/66 (37%)

Query: 36  TDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95
           + R ++ +    + L  Y +        +    +F        T  FA+D  +  I W+ 
Sbjct: 44  SYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQ 103

Query: 96  ALSLAS 101
           A+  A+
Sbjct: 104 AMYRAT 109

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 3e-05
 Identities = 11/57 (19%), Positives = 26/57 (45%)

Query: 45  LGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101
           +GS+ L        ++  +  +       +A  + Y+  A+ ++ +  W+ AL+ AS
Sbjct: 63  VGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQAS 119

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 4e-05
 Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 1/74 (1%)

Query: 36  TDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95
                     G + +   +     + D   RK  FK    + + Y F A     M  W+ 
Sbjct: 51  KAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLR 110

Query: 96  ALSLASILQNSSTG 109
            ++ A I    S+G
Sbjct: 111 VVNAA-IASGPSSG 123

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 6e-05
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 42  EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101
            +    I + +  I    S+ K    F             F A+ R+ M+ W+  +  +S
Sbjct: 52  SEEEQPISVNACLIDISYSETKRKNVFRLTTSD---CECLFQAEDRDDMLAWIKTIQESS 108

Query: 102 ILQNSSTG 109
            L    TG
Sbjct: 109 NLNEEDTG 116

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.9 bits (84), Expect = 6e-05
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 39  FEEEKLLGSILLPSYKISPCSSDDKVFRK-FSFKAEHANMRTYYFAADTRESMIQWMNAL 97
              + L G + +P+ +I+            FS         +   AAD++E +  W+  +
Sbjct: 35  TSSDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKI 94

Query: 98  SLAS 101
              +
Sbjct: 95  REVA 98

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 1e-04
 Identities = 6/72 (8%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 30  RNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES 89
           + G  ++    +     ++ + +  +     +D+  R           ++    A++++ 
Sbjct: 32  QGGNLMSQARGDVAGGLAMDIDNCSVMAVDCEDR--RYCFQITSFDGKKSSILQAESKKD 89

Query: 90  MIQWMNALSLAS 101
             +W+  ++  S
Sbjct: 90  HEEWICTINNIS 101

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 1e-04
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 66  RKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSS 107
             + F+  +      Y  + T E   +W++ L    I  NS 
Sbjct: 97  FPYPFQVVYDE-GPLYVFSPTEELRKRWIHQLK-NVIRYNSD 136

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 2e-04
 Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 4/65 (6%)

Query: 41  EEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANM---RTYYFAADTRESMIQWMNA 96
           ++       L ++          +  R  +F              F  +T E   +W  A
Sbjct: 44  QDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTA 103

Query: 97  LSLAS 101
           +   +
Sbjct: 104 IQTVA 108

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (78), Expect = 4e-04
 Identities = 14/57 (24%), Positives = 22/57 (38%)

Query: 51  PSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSS 107
           P    +     D+      F+  H  M  Y F AD   S  +W++A    ++   SS
Sbjct: 52  PLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVSGPSS 108

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 8e-04
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 40  EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
             ++  GSI L S      ++     R+F+F+ +  +  +Y  AAD+   M +W+  L+ 
Sbjct: 65  ISKEPKGSIFLDSCMGVVQNNKV---RRFAFELKMQDKSSYLLAADSEVEMEEWITILNK 121

Query: 100 AS 101
             
Sbjct: 122 IL 123

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (75), Expect = 0.001
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 74  HANMRTYYFAADTRESMIQWMNALSLASILQNSST 108
               RT+ F  +  E    W++ L  A   Q+ ++
Sbjct: 64  VTTQRTFVFRVEKEEERNDWISILLNALKSQSLTS 98

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.6 bits (73), Expect = 0.002
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 37  DRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96
           DR   +     + L   ++ P  S D ++        H         A + E M  W+  
Sbjct: 32  DRNRSKVAQQPLSLVGCEVVPDPSPDHLYSFRIL---HKGEELAKLEAKSSEEMGHWLGL 88

Query: 97  LSLAS 101
           L   S
Sbjct: 89  LLSES 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	99.85
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.82
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.82
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.81
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	99.81
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.8
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.8
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.78
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.78
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.77
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.77
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.77
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.75
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.75
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.74
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	99.73
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.72
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.71
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.69
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.69
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.68
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.66
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.65
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.64
d1wi1a_	126	Calcium-dependent activator protein for secretion,	99.63
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.62
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.61
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.58
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.53
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	99.24
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	98.87
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	98.81
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	98.67
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	98.62
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	98.27
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	98.01
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	97.98
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	97.74
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	97.59
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	96.99
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	96.01
d1foea2	162	GEF of TIAM1 (T-Lymphoma invasion and metastasis i	95.58
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	94.77
d2zkmx3	131	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	93.6

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.5e-21  Score=120.24  Aligned_cols=82  Identities=23%  Similarity=0.323  Sum_probs=70.4

Q ss_pred             ccCCceEEeeCC---eEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHH
Q psy4640          20 VGSDLDSIGSRN---GLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA   96 (109)
Q Consensus        20 ~~~~~~~vL~~~---~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~a   96 (109)
                      .+++-|+||+++   .||||+++++..|.|.|+|.+|.+.........+++|+|+|.+++ |+|+|+|+|++|+++||+|
T Consensus        15 ~W~krwfvL~~~~~~~ly~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~F~i~~~~-r~~~l~A~s~~e~~~Wi~a   93 (99)
T d2coca1          15 TWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAK-QSWYLSASSAELQQQWLET   93 (99)
T ss_dssp             CEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETT-EEEEEEESSHHHHHHHHHH
T ss_pred             CccEEEEEEecCCccEEEEECcCccccccccccccceeeeecccccccCCceEEEEEcCC-cEEEEECCCHHHHHHHHHH
Confidence            344568999987   699999999999999999999988765554445678999998875 8999999999999999999


Q ss_pred             HHHhhh
Q psy4640          97 LSLASI  102 (109)
Q Consensus        97 I~~a~~  102 (109)
                      |+.|++
T Consensus        94 L~~Aa~   99 (99)
T d2coca1          94 LSTAAH   99 (99)
T ss_dssp             HHHHHS
T ss_pred             HHHhcC
Confidence            999874

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.4e-20  Score=119.18  Aligned_cols=84  Identities=15%  Similarity=0.143  Sum_probs=71.6

Q ss_pred             ccccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeC-------CceEEEEEcCCHHHH
Q psy4640          18 KSVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA-------NMRTYYFAADTRESM   90 (109)
Q Consensus        18 ~~~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~-------~~r~y~fsA~s~~e~   90 (109)
                      +..+++-|+||+++.|+||+++++..|.|.|+|.+++|..++.. ...++|+|+|.++       +.|+|+|+|+|++|+
T Consensus        18 ~~~WkkRwFvL~~~~L~yyk~~~~~~~~~~i~l~~~~v~~~~~~-~~~~~~~F~l~~~~~~~~~~~~r~~~l~a~s~ed~   96 (111)
T d2dyna_          18 KGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKG-FMSSKHIFALFNTEQRNVYKDYRQLELACETQEEV   96 (111)
T ss_dssp             TTSSEEEEEEEESSEEEEESSTTCCCEEEEEECTTEEEEEECCC-STTCSEEEEEEESSCSCSBTTBSSEEEEESSHHHH
T ss_pred             cCCceEEEEEEECCEEEEEcchhhcccccccccccceeEeeccc-cccccccEEeeeccccccccCceeEEEECCCHHHH
Confidence            34355568999999999999999999999999999988776542 3467899999754       457999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy4640          91 IQWMNALSLASI  102 (109)
Q Consensus        91 ~~Wi~aI~~a~~  102 (109)
                      .+||+||.+|+.
T Consensus        97 ~~W~~al~~A~~  108 (111)
T d2dyna_          97 DSWKASFLRAGV  108 (111)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcc
Confidence            999999999975

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.8e-20  Score=115.70  Aligned_cols=78  Identities=17%  Similarity=0.074  Sum_probs=66.5

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      +.-|+||+++.|+||+++.+..|.|.|+|.+|.+......  .+++++|.|.+++ |+|+|+|+|++|+++||+||+.++
T Consensus        21 k~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~--~~~~~~F~i~~~~-r~~~l~a~s~~~~~~Wi~ai~~~i   97 (100)
T d1faoa_          21 KTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYS--QERVNCFCLVFPF-RTFYLCAKTGVEADEWIKILRWKL   97 (100)
T ss_dssp             EEEEEEEETTEEEEESSTTCSSCSEEEEGGGCCEEEEECS--SSSSSEEEEEETT-EEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEECCEEEEEeccCCccCceEEechheEEEEeccc--cccccccccccCC-eEEEEEeCCHHHHHHHHHHHHHHH
Confidence            3457999999999999999999999999999875433221  2568999999886 899999999999999999999876


Q ss_pred             h
Q psy4640         102 I  102 (109)
Q Consensus       102 ~  102 (109)
                      .
T Consensus        98 ~   98 (100)
T d1faoa_          98 S   98 (100)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.3e-20  Score=115.25  Aligned_cols=82  Identities=41%  Similarity=0.517  Sum_probs=71.9

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      +++-|+||.++.|+||+++.+..|.+.|+|.++.|..+......+.+|+|.+.+++.++|+|+|+|++|+++||+||+.|
T Consensus        26 W~kr~~vL~~~~L~~y~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~s~~e~~~Wi~al~~A  105 (107)
T d1upqa_          26 WKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA  105 (107)
T ss_dssp             EEEEEEEEETTEEEEESSTTCCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             eeEEEEEEECCEEEEecCcccccccceecccceEEEEeccCcccCcceEEEEEcCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence            34457999999999999999999999999999998766544445678999999888899999999999999999999999


Q ss_pred             hh
Q psy4640         101 SI  102 (109)
Q Consensus       101 ~~  102 (109)
                      ++
T Consensus       106 ~~  107 (107)
T d1upqa_         106 SR  107 (107)
T ss_dssp             HC
T ss_pred             hC
Confidence            74

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.7e-19  Score=114.17  Aligned_cols=80  Identities=13%  Similarity=0.190  Sum_probs=69.3

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCC-CCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~-~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      ++.|+||+++.|+||+++.+..|.|.|+|.++.+..... .+..+++|+|.|.+++.++|+|+|+|++|+++|++||+.+
T Consensus        30 ~~r~~vL~~~~L~~y~~~~~~~p~g~i~L~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~~  109 (111)
T d1u5fa1          30 QKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI  109 (111)
T ss_dssp             EEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             eEEEEEEECCEEEeeccccccCcceEEEecccEEEeeccccccccccceEEEEccCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999999999998654433 3344678999999888899999999999999999999987


Q ss_pred             h
Q psy4640         101 S  101 (109)
Q Consensus       101 ~  101 (109)
                      +
T Consensus       110 i  110 (111)
T d1u5fa1         110 L  110 (111)
T ss_dssp             C
T ss_pred             h
Confidence            5

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=3.8e-19  Score=112.37  Aligned_cols=82  Identities=20%  Similarity=0.197  Sum_probs=72.0

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      +++-|+||+++.|+||+++.+.++.+.|+|.++.+..+.+.  .+++++|.|.+++.++|+|+|+|++|+++||+||+.|
T Consensus        24 W~kr~~vL~~~~L~~~k~~~~~~~~~~i~l~~~~~~~~~~~--~~~~~~F~i~~~~~~~~~f~a~s~~~~~~Wi~ai~~a  101 (109)
T d1wgqa_          24 WKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDE--NSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEG  101 (109)
T ss_dssp             CEEEEEEEETTEEEEESCTTCSSCSEEEECSSEEEEECCCS--SCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEeCCEEEEeccccccccccccccceeeeeecccc--cccceeeeeecccceEEEEECCCHHHHHHHHHHHHHH
Confidence            34458999999999999999999999999999987666543  3678999999888899999999999999999999999


Q ss_pred             hhhc
Q psy4640         101 SILQ  104 (109)
Q Consensus       101 ~~~~  104 (109)
                      +...
T Consensus       102 ~~~~  105 (109)
T d1wgqa_         102 TVSG  105 (109)
T ss_dssp             HSCC
T ss_pred             hccC
Confidence            8654

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.3e-19  Score=112.47  Aligned_cols=77  Identities=18%  Similarity=0.144  Sum_probs=66.3

Q ss_pred             CCceEEeeCCeEEEEcCCC-CCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          22 SDLDSIGSRNGLAVTDRFE-EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~-d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      ++-|+||+++.|+||+++. +..|.|.|+|.+|.|.....   .+++|+|.+.+++.++|+|+|+|++|+++||.+|+.|
T Consensus        16 kkR~fvL~~~~L~yyk~~~~~~~~~~~i~l~~~~v~~~~~---~~~~~~f~~~~~~~~~~~l~A~s~~e~~~Wi~~L~~~   92 (95)
T d2cofa1          16 KSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPS---PDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSE   92 (95)
T ss_dssp             EEEEEEECSSCEEEECSSTTCSEEEEEECTTTCEEECCCB---TTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             eEEEEEEECCEEEEEecccccccccccccccceEEEeccc---ccceecceeccccceeEEeeCCCHHHHHHHHHHHHHH
Confidence            3348999999999999875 45689999999998875443   3568999999888899999999999999999999987


Q ss_pred             h
Q psy4640         101 S  101 (109)
Q Consensus       101 ~  101 (109)
                      +
T Consensus        93 t   93 (95)
T d2cofa1          93 S   93 (95)
T ss_dssp             S
T ss_pred             h
Confidence            6

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.2e-19  Score=112.67  Aligned_cols=82  Identities=16%  Similarity=0.220  Sum_probs=70.7

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCC-CCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~-~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|.+|++..+.. .+..+++|+|.|.+++.++|+|+|+|++|+++||+||+.+
T Consensus        22 kkr~~vL~~~~L~y~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~f~a~s~~e~~~W~~ai~~~  101 (106)
T d1u5da1          22 QKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFL  101 (106)
T ss_dssp             EEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCEEEEEecccccccccccccCCceEeeccccccccCCceeEEEEcCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999999999998765433 2345678999999887789999999999999999999998


Q ss_pred             hhh
Q psy4640         101 SIL  103 (109)
Q Consensus       101 ~~~  103 (109)
                      +..
T Consensus       102 i~~  104 (106)
T d1u5da1         102 LKD  104 (106)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.4e-19  Score=113.34  Aligned_cols=78  Identities=17%  Similarity=0.238  Sum_probs=68.0

Q ss_pred             ceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeC--CceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          24 LDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA--NMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~--~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      -|+||+++.|+||+++.+..|.|.|+|.+|+|...+.. ..+++|+|.|..+  +.++|+|+|+|++|+++||.||+.|+
T Consensus        20 R~fvL~~~~L~yy~~~~~~~~~~~i~l~~~~v~~~~~~-~~~~~~~f~i~~~~~~~~~~~~~a~s~~e~~~Wi~ai~~~~   98 (101)
T d2fjla1          20 HYFVLTSSKIYYSEETSSDLLRGVLDVPACQIAIRPEG-KNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA   98 (101)
T ss_dssp             EEEEEETTEEEECCCCSCTCCCEEECSTTCEEEEETTC-SSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEeccccceecceEEcCCceeEeeeee-cccccceeEEeccccccEEEEEEeCCHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999998765442 3466899999864  35789999999999999999999987


Q ss_pred             h
Q psy4640         102 I  102 (109)
Q Consensus       102 ~  102 (109)
                      .
T Consensus        99 ~   99 (101)
T d2fjla1          99 Q   99 (101)
T ss_dssp             T
T ss_pred             h
Confidence            5

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.3e-19  Score=114.53  Aligned_cols=85  Identities=24%  Similarity=0.247  Sum_probs=68.2

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCC-----------------------c
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-----------------------M   77 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~-----------------------~   77 (109)
                      +++-|+||++++|+||+++++.+|.|.|+|.+|+|.....   .+++++|+|.++.                       .
T Consensus        23 WkkRwfvL~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~---~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (130)
T d1v88a_          23 WTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPS---KKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPS   99 (130)
T ss_dssp             CEEEEEEEETTEEEEESCSSSCCCCEEEECSSCEECCCCT---TTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCS
T ss_pred             ceEEEEEEeCCEEEEEcCCCCCcceeEEECCCeEEEEccc---cCCCceEEEEcCCCcceecccCcccccceeEEecCCc
Confidence            3334899999999999999999999999999999876544   2457899985432                       2


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHhhhhccCCCC
Q psy4640          78 RTYYFAADTRESMIQWMNALSLASILQNSSTG  109 (109)
Q Consensus        78 r~y~fsA~s~~e~~~Wi~aI~~a~~~~~~~~~  109 (109)
                      +.|+|+|+|++|+++||+||+.|+. ..|..|
T Consensus       100 ~~~~l~A~s~~e~~~Wi~al~~~i~-~~p~sG  130 (130)
T d1v88a_         100 SYLIIRATSESDGRCWMDALELALK-SGPSSG  130 (130)
T ss_dssp             SCCEEECSSHHHHHHHHHHHHHHHT-TTTTCC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHhh-cCCCCC
Confidence            3478999999999999999999874 455544

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.6e-19  Score=110.96  Aligned_cols=77  Identities=17%  Similarity=0.109  Sum_probs=66.7

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      ++-|+||.++.|+||+++++..|.|.|+|.++.+...      .++++|.|.+++ |+|+|+|+|++|+++||+||..|+
T Consensus        19 ~kr~fvL~~~~L~~~~~~~~~~~~~~i~L~~~~~~~~------~~~~~f~i~~~~-~~~~l~a~s~~e~~~Wi~ai~~~i   91 (102)
T d2coda1          19 QKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRV------QGDNKFEVVTTQ-RTFVFRVEKEEERNDWISILLNAL   91 (102)
T ss_dssp             EEEEEEECSSEEEEEESSCCSSCCCEEETTTEEEEEE------ETTTEEEEEESS-CCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEECCEEEEEeccCcceeEEEEEchhceeecc------ccceeEEEEcCC-cEEEEEeCCHHHHHHHHHHHHHHH
Confidence            4458999999999999999999999999999876543      236899998876 899999999999999999999988


Q ss_pred             hhcc
Q psy4640         102 ILQN  105 (109)
Q Consensus       102 ~~~~  105 (109)
                      ..+.
T Consensus        92 ~~~~   95 (102)
T d2coda1          92 KSQS   95 (102)
T ss_dssp             HHHS
T ss_pred             HhCc
Confidence            6553

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=8.6e-19  Score=122.06  Aligned_cols=81  Identities=12%  Similarity=0.148  Sum_probs=70.7

Q ss_pred             CceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCC-CcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          23 DLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSD-DKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        23 ~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~-~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      +.|+||+++.|+||+++.+..|.|.|+|.+|.+..+... ...+++|||.|.+++.|+|+|+|+|++|+++||.||+.++
T Consensus       126 kr~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~f~a~s~~e~~~Wi~al~~~i  205 (209)
T d1u5ea1         126 KRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL  205 (209)
T ss_dssp             EEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEecCCCCccceEEEecceeeeeccccccccCCCcEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            348999999999999999999999999999987665442 2346789999998888999999999999999999999987


Q ss_pred             hh
Q psy4640         102 IL  103 (109)
Q Consensus       102 ~~  103 (109)
                      ..
T Consensus       206 ~~  207 (209)
T d1u5ea1         206 QD  207 (209)
T ss_dssp             HT
T ss_pred             Hh
Confidence            53

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.4e-19  Score=112.54  Aligned_cols=81  Identities=14%  Similarity=0.115  Sum_probs=65.5

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeE-EeecCCC---CcccceeeEEEeeCCceEEEEEc-----------C
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYK-ISPCSSD---DKVFRKFSFKAEHANMRTYYFAA-----------D   85 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~---~~~~k~~~F~i~~~~~r~y~fsA-----------~   85 (109)
                      +++-|+||++++|+||+++.+.+|.|.|+|.++. |..+.+.   ....++|||+|.+++ |+|||.|           +
T Consensus        17 wkkRwFvL~~~~L~YYk~~~~~~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~-rtyy~~~~~~~~~~~~s~~   95 (112)
T d2coaa1          17 RKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTAN-ATYFVGEMPGGTPGGPSGQ   95 (112)
T ss_dssp             CEEEEEEECSSEEEEESSSSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSS-CCCCEECCSCCCSSSCCCC
T ss_pred             eeEEEEEEEcceEEEEeccCCCccceEEeeeccccccccccccccccCCCccEEEEEeCC-eEEEEecCCcccccccccc
Confidence            3445899999999999999999999999998764 5544331   123467999999876 8999955           7


Q ss_pred             CHHHHHHHHHHHHHhhh
Q psy4640          86 TRESMIQWMNALSLASI  102 (109)
Q Consensus        86 s~~e~~~Wi~aI~~a~~  102 (109)
                      +++++++|++||+.|.+
T Consensus        96 ~~~~~~~W~~aI~~A~~  112 (112)
T d2coaa1          96 GAEAARGWETAIRQALM  112 (112)
T ss_dssp             CSHHHHHHHHHHHHHGG
T ss_pred             ChHHHHHHHHHHHHhhC
Confidence            78999999999999863

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3e-18  Score=109.09  Aligned_cols=85  Identities=21%  Similarity=0.282  Sum_probs=70.8

Q ss_pred             ceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCC-------ceEEEEEcCCHHHHHHHHHH
Q psy4640          24 LDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-------MRTYYFAADTRESMIQWMNA   96 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~-------~r~y~fsA~s~~e~~~Wi~a   96 (109)
                      -|+||+++.|+||+++.+.+|.+.|+|.++.|..+........+|+|+|..+.       .++|+|+|++++|+++||+|
T Consensus        27 R~fvL~~~~l~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~a~s~ee~~~Wi~a  106 (118)
T d1v89a_          27 RYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKF  106 (118)
T ss_dssp             EEEEEETTEEEEESSSSCCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHH
T ss_pred             EEEEEECCEEEEecccCcccccceeccCceEEEEeccccccCCCcEEEEecCCCcceecCCcEEEEEcCCHHHHHHHHHH
Confidence            47899999999999999999999999999988766554445668999997532       47899999999999999999


Q ss_pred             HHHhhhhccCCCC
Q psy4640          97 LSLASILQNSSTG  109 (109)
Q Consensus        97 I~~a~~~~~~~~~  109 (109)
                      |+.|+ ...|.+|
T Consensus       107 I~~a~-~~~p~sg  118 (118)
T d1v89a_         107 LRRVA-GSGPSSG  118 (118)
T ss_dssp             HHHHH-HCCSCCC
T ss_pred             HHHHH-ccCCCCC
Confidence            99986 4445554

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.6e-18  Score=111.61  Aligned_cols=80  Identities=19%  Similarity=0.249  Sum_probs=64.0

Q ss_pred             cCCceEEeeCCeEEEEcCCCCC----cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEE----KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA   96 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~----~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~a   96 (109)
                      +++-|+||+++.|+||+++.+.    .|.|.|+|.+|.|....+.  .+++|+|.|.+++ ++|+|+|+|++|+++||.+
T Consensus        27 Wkkr~fvL~~~~L~~y~~~~~~~~~~~~~~~i~L~~~~v~~~~~~--~~r~~~F~i~~~~-~~~~f~A~s~~e~~~Wi~a  103 (133)
T d2j59m1          27 WKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSE--TKRKNVFRLTTSD-CECLFQAEDRDDMLAWIKT  103 (133)
T ss_dssp             CEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEECSSS--CSCSSEEEEECSS-CEEEEECSSHHHHHHHHHH
T ss_pred             ceEEEEEEeCCEEEEEeccccccccccccccceecceEEEEcccc--cccCceeEEecCC-CEEEEEeCCHHHHHHHHHH
Confidence            3445899999999999987543    5889999999998765542  4678999999876 7899999999999999999


Q ss_pred             HHHhhhh
Q psy4640          97 LSLASIL  103 (109)
Q Consensus        97 I~~a~~~  103 (109)
                      |+.|+..
T Consensus       104 i~~a~~~  110 (133)
T d2j59m1         104 IQESSNL  110 (133)
T ss_dssp             HHHHCCC
T ss_pred             HHHHHhc
Confidence            9988753

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.1e-17  Score=105.90  Aligned_cols=84  Identities=17%  Similarity=0.172  Sum_probs=71.5

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      +++-|+||.++.|+||+++++..|.|.|+|.+|.+..... +...++++|.|.+++.++|+|+|+|++|+++||.+|+.|
T Consensus        21 WkkryfvL~~~~L~~y~~~~~~~p~~~i~l~~~~~~~~~~-~~~~~~~~f~l~~~~~~~~~~~a~s~~e~~~Wi~ai~~a   99 (113)
T d1plsa_          21 WKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQ-DFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKA   99 (113)
T ss_dssp             CEEEEEEEETTEEEEESSTTCSSCSEEEESSSCCEESSCC-SSCCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCEEEEEecCCccccceEEECccCeEEeeec-ccCCcceEEEEecCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence            3445899999999999999999999999999997654433 224668999999888899999999999999999999999


Q ss_pred             hhhcc
Q psy4640         101 SILQN  105 (109)
Q Consensus       101 ~~~~~  105 (109)
                      +....
T Consensus       100 i~~~~  104 (113)
T d1plsa_         100 IKCIE  104 (113)
T ss_dssp             HHHHT
T ss_pred             HHhCc
Confidence            86653

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.3e-18  Score=112.36  Aligned_cols=85  Identities=7%  Similarity=-0.069  Sum_probs=70.0

Q ss_pred             ccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      .+++-|+||++++|+||+++.+..|.|.|+|.+|.+..... +..+.+++|.|.+++ ++|+|+|+|++|+++|+++|..
T Consensus        26 ~WkkrwfvL~~~~L~yY~~~~d~~~~~~i~L~~~~~~~~~~-~~~~~~~~F~i~~~~-~~~~f~Aes~~e~~~Wi~~I~~  103 (136)
T d1x1fa1          26 EYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQN-STEKNCAKFTLVLPK-EEVQLKTENTESGEEWRGFILT  103 (136)
T ss_dssp             SCEEEEEEEETTEEEEESCSSCSSCSEECCCSSCCEEEECC-CTTSCCCEEEEECSS-CCEEEECSSHHHHHHHHHHHHH
T ss_pred             CeEEEEEEEcCCEeEEEeecccccccccccccceeeeeeec-ccccccceeeecCCC-ceEEEEeCCHHHHHHHHHHHHH
Confidence            45556999999999999999999999999999886443322 123557999998775 7899999999999999999999


Q ss_pred             hhhhccC
Q psy4640         100 ASILQNS  106 (109)
Q Consensus       100 a~~~~~~  106 (109)
                      ++....|
T Consensus       104 v~~~~~p  110 (136)
T d1x1fa1         104 VTELSVP  110 (136)
T ss_dssp             HHHSSCC
T ss_pred             HHhccCC
Confidence            8866544

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=8.5e-18  Score=108.47  Aligned_cols=89  Identities=19%  Similarity=0.221  Sum_probs=63.0

Q ss_pred             ccccCCceEEe--eCCeEEEEcCCCCCcccEEEEc-----CCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHH
Q psy4640          18 KSVGSDLDSIG--SRNGLAVTDRFEEEKLLGSILL-----PSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES   89 (109)
Q Consensus        18 ~~~~~~~~~vL--~~~~L~yyk~~~d~~p~G~I~L-----~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e   89 (109)
                      |.+-+ -|+||  +++.|+||+++.++.+.|.|+|     ..+. +..+......+..++|.+.+++ |.|+|+|+|++|
T Consensus        30 k~Wkr-RwFvL~~~~~~L~yy~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~l~Aes~~e  107 (126)
T d1v5pa_          30 GKFLR-RYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALS-QRYFLQANDQKD  107 (126)
T ss_dssp             SCEEE-EEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEECSS-CEEEEECSSHHH
T ss_pred             CCeeE-EEEEEEcCCCeEEEeeccccccccceeecccceeeeeeccccccccccccccceEEEcCCC-eeEEEECCCHHH
Confidence            34444 37899  5789999999887777765555     4333 2223222223456889987654 999999999999


Q ss_pred             HHHHHHHHHHhhhhccCCCC
Q psy4640          90 MIQWMNALSLASILQNSSTG  109 (109)
Q Consensus        90 ~~~Wi~aI~~a~~~~~~~~~  109 (109)
                      +++||+||+.|+ ...|++|
T Consensus       108 ~~~Wi~aL~~A~-~~~P~sg  126 (126)
T d1v5pa_         108 LKDWVEALNQAS-KSGPSSG  126 (126)
T ss_dssp             HHHHHHHHHHTT-TTSSSCC
T ss_pred             HHHHHHHHHHHh-ccCCCCC
Confidence            999999999987 3445544

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=4.3e-18  Score=112.22  Aligned_cols=87  Identities=13%  Similarity=0.055  Sum_probs=69.6

Q ss_pred             CCceEEeeCC------eEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHH
Q psy4640          22 SDLDSIGSRN------GLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        22 ~~~~~vL~~~------~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi   94 (109)
                      ++-|+||+++      .|+||+++.+.+|.|.|+|.++. +..+.+.+..+++|+|.|.+++.+.|+|+|+|++|+++||
T Consensus        43 kkrwfvL~~~~~~~~~~L~yy~~~~~~k~~g~i~l~~~~~~~~~~~~~~~~~~~~F~l~t~~~~~y~f~A~s~~e~~~Wv  122 (136)
T d1v5ma_          43 QKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWV  122 (136)
T ss_dssp             EEEEEEEEECSSSCCEEEEEESSTTSSSCSSCEETTTCCBCCCCCCSSSCCCTTEECCBCTTSCBEEEECSSHHHHHHHH
T ss_pred             eEEEEEEeCCcccchhhhhhhCcccccCcCcceecccceeeeeeccccCCCCCcEEEEEcCCCcEEEEECCCHHHHHHHH
Confidence            3358999876      59999999999999999998764 3333333345678999999888788999999999999999


Q ss_pred             HHHHHhhhhccCCCC
Q psy4640          95 NALSLASILQNSSTG  109 (109)
Q Consensus        95 ~aI~~a~~~~~~~~~  109 (109)
                      ++|+.|+. ..|.+|
T Consensus       123 ~ai~~ai~-~~~~sg  136 (136)
T d1v5ma_         123 ADIQGCVD-SGPSSG  136 (136)
T ss_dssp             HHHHHHHH-HSCSCC
T ss_pred             HHHHHHHh-cCCCCC
Confidence            99999864 445555

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.3e-17  Score=103.61  Aligned_cols=82  Identities=26%  Similarity=0.304  Sum_probs=68.4

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEE-eecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKI-SPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA  100 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V-~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a  100 (109)
                      +.-|+||+++.|+||+++.+..|.|.|+|.++.+ ..+...+..+..++|.|.+++ ++|+|+|+|++|+++||++|+.|
T Consensus        20 kkr~fvL~~~~l~yy~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~-~~~~~~a~s~~e~~~W~~aI~~a   98 (103)
T d1eaza_          20 KRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS-RTFYVQADSPEEMHSWIKAVSGA   98 (103)
T ss_dssp             EEEEEEECSSEEEEESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHH
T ss_pred             eEEEEEEECCEEEEEecccCcccceEEEccceEEeeccccccccccceEEEEEeCC-EEEEEEeCCHHHHHHHHHHHHHH
Confidence            4458999999999999999999999999988754 344332334557899998775 89999999999999999999999


Q ss_pred             hhhc
Q psy4640         101 SILQ  104 (109)
Q Consensus       101 ~~~~  104 (109)
                      +..+
T Consensus        99 i~~~  102 (103)
T d1eaza_          99 IVAQ  102 (103)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8764

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.5e-17  Score=104.36  Aligned_cols=87  Identities=20%  Similarity=0.193  Sum_probs=67.4

Q ss_pred             cCCceEEee--CCeEEEEcCCCCCcccEEEEcCCeEEeecC-CC----CcccceeeEEEeeCCceEEEEEcCCHHHHHHH
Q psy4640          21 GSDLDSIGS--RNGLAVTDRFEEEKLLGSILLPSYKISPCS-SD----DKVFRKFSFKAEHANMRTYYFAADTRESMIQW   93 (109)
Q Consensus        21 ~~~~~~vL~--~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~-~~----~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~W   93 (109)
                      +++-|+||+  +.+||||+++.+.+|.|.|+|.+|.+.... ..    ......++|.+.+++ |+|+|+|+|++|+++|
T Consensus        24 WkkR~fvL~~~~~~L~~~~~~~~~~p~g~i~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~s~~e~~~W  102 (117)
T d1v5ua_          24 WKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTR-RVYNFCAQDVPSAQQW  102 (117)
T ss_dssp             CEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEESS-CEEEEECSSHHHHHHH
T ss_pred             ceEEEEEEeCCCCEEEecccccccCcceEEEecceEEEeecccccccccccccceEEEeeCCC-cEEEEEeCCHHHHHHH
Confidence            444579995  468999999999999999999998754322 21    112334678887665 8999999999999999


Q ss_pred             HHHHHHhhhhccCCCC
Q psy4640          94 MNALSLASILQNSSTG  109 (109)
Q Consensus        94 i~aI~~a~~~~~~~~~  109 (109)
                      |.+|+.|+ ...|+.|
T Consensus       103 v~~l~~ai-~~~pssg  117 (117)
T d1v5ua_         103 VDRIQSCL-SSGPSSG  117 (117)
T ss_dssp             HHHHHTTC-CCCCCCC
T ss_pred             HHHHHHHH-hcCCCCC
Confidence            99999876 4567766

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.6e-18  Score=107.24  Aligned_cols=77  Identities=9%  Similarity=0.103  Sum_probs=60.8

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCC-ceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-MRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~-~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      +++-|+||+++.|+||++. +..|.+.|+|.+|.|..+.+   ..+.|||.|..++ .|+|+|+|+|++|+++||.||+.
T Consensus        24 W~kRwfvL~~~~L~y~~~~-~~~~~~~i~l~~~~v~~~~~---~~~~~~f~i~~~~~~~~~~l~A~s~~e~~~Wi~al~~   99 (101)
T d2elba2          24 WDRQFYFTQGGNLMSQARG-DVAGGLAMDIDNCSVMAVDC---EDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINN   99 (101)
T ss_dssp             CCEEEEEEETTEEEEECTT-CCCE----EEEECCCCCCCC---CCSSSSSEECCCSSSCCCCEECSSHHHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCEEEEEccC-CcccceEEEecccccccccc---cCCcceEEEEeecccceEEEECCCHHHHHHHHHHHHh
Confidence            4445899999999999976 56899999999998876654   2567999997653 47999999999999999999998


Q ss_pred             hh
Q psy4640         100 AS  101 (109)
Q Consensus       100 a~  101 (109)
                      ++
T Consensus       100 vs  101 (101)
T d2elba2         100 IS  101 (101)
T ss_dssp             TC
T ss_pred             cC
Confidence            75

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=99.69  E-value=6.2e-17  Score=101.22  Aligned_cols=78  Identities=17%  Similarity=0.157  Sum_probs=65.5

Q ss_pred             cCCceEEeeCCeEEEEcCCCC------CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEE------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d------~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi   94 (109)
                      +.+-|+||+++.|+||+++.+      ..+.+.|+|.+|.+....+.  .+++|+|.|.+++.++|+|+|+|++|+++||
T Consensus        23 Wk~r~~vL~~~~L~~yk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~--~~~~~~f~i~~~~~~~~~~~a~s~~e~~~W~  100 (106)
T d1btna_          23 WHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDY--KKKKHVFKLRLSDGNEYLFQAKDDEEMNTWI  100 (106)
T ss_dssp             CEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSC--CSSSSEEEEECTTSCEEEEECSSHHHHHHHH
T ss_pred             CcEEEEEEECCEEEEEeChhhcccccccCcceeEEeccceeeecccc--ccCcceEeecccCCCEEEEECCCHHHHHHHH
Confidence            444589999999999998753      45778999999987765442  3668999999888899999999999999999


Q ss_pred             HHHHHh
Q psy4640          95 NALSLA  100 (109)
Q Consensus        95 ~aI~~a  100 (109)
                      +||+.|
T Consensus       101 ~ai~~A  106 (106)
T d1btna_         101 QAISSA  106 (106)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            999986

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.1e-16  Score=102.60  Aligned_cols=78  Identities=18%  Similarity=0.151  Sum_probs=64.2

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEe---------------------eCCceEE
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE---------------------HANMRTY   80 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~---------------------~~~~r~y   80 (109)
                      ++-|+||+++.|+||+++.+..|.|.|+|.+|+|..+.+.   .++++|.+.                     ....++|
T Consensus        22 krR~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (127)
T d1fgya_          22 KRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDP---RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVY   98 (127)
T ss_dssp             EEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECCS---SCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEE
T ss_pred             EEEEEEEECCEEEEEccCCCccccceEeCCCeEEEEccCC---CCCceEEEeccccccccccccccccceeEeeCCCeEE
Confidence            3348999999999999999999999999999988765442   345666552                     2346899


Q ss_pred             EEEcCCHHHHHHHHHHHHHhhh
Q psy4640          81 YFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        81 ~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      +|+|+|++|+++||.||+.|+.
T Consensus        99 ~f~a~s~~e~~~Wi~aL~~~i~  120 (127)
T d1fgya_          99 RISAPSPEEKEEWMKSIKASIS  120 (127)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHc
Confidence            9999999999999999999864

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.8e-16  Score=98.10  Aligned_cols=81  Identities=23%  Similarity=0.266  Sum_probs=64.3

Q ss_pred             CCceEEeeCC--eEEEEcCCCCCcccEEEEcCCeEEeecCCC---CcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHH
Q psy4640          22 SDLDSIGSRN--GLAVTDRFEEEKLLGSILLPSYKISPCSSD---DKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA   96 (109)
Q Consensus        22 ~~~~~vL~~~--~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~---~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~a   96 (109)
                      ++-|+||.++  .||||+++.+..|.|.|.+.+|.+..+.+.   ......++|.+.+++.+.|+|+|+|++|+++||+|
T Consensus        19 kkR~fvL~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~s~~e~~~W~~a   98 (104)
T d2i5fa1          19 KVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKA   98 (104)
T ss_dssp             EEEEEEEETTTTEEEEECTTSCSSCSEEEECTTCEEEEECC--------CCSEEEEECTTCCEEEEECSSHHHHHHHHHH
T ss_pred             EEEEEEEECCeeEEEEEcCccccCccceEeecceEEEEeccCcccccccCccEEEEECCCCeEEEEEcCCHHHHHHHHHH
Confidence            3358999875  467778888899999999999987654331   23345789999988889999999999999999999


Q ss_pred             HHHhhh
Q psy4640          97 LSLASI  102 (109)
Q Consensus        97 I~~a~~  102 (109)
                      |+.|+.
T Consensus        99 i~~a~r  104 (104)
T d2i5fa1          99 IQMASR  104 (104)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            999873

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.6e-17  Score=107.11  Aligned_cols=80  Identities=21%  Similarity=0.184  Sum_probs=64.8

Q ss_pred             cCCceEEeeCC-----eEEEEcCC-CCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHH
Q psy4640          21 GSDLDSIGSRN-----GLAVTDRF-EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        21 ~~~~~~vL~~~-----~L~yyk~~-~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi   94 (109)
                      +++-|+||+++     .|+||+++ .+..|.|.|+|.+|.+.....   ..++|+|.|.+++.|+|+|+|+|++|+++||
T Consensus        40 WkkR~fvL~~~~~~~~~L~yy~~~~~~~~~~g~i~l~~~~~~~~~~---~~~~~~F~i~~~~~~~~~l~A~s~~e~~~Wi  116 (150)
T d1wg7a_          40 FKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNN---KVRRFAFELKMQDKSSYLLAADSEVEMEEWI  116 (150)
T ss_dssp             CEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEECCCC---SSCTTEEEEECSSSCEEEEECSSHHHHHHHH
T ss_pred             ceEEEEEEEcCcCCceeEEEEeccccccccccccccccccccccCc---cccceEEEEEcCCCeEEEEEeCCHHHHHHHH
Confidence            34458999854     47777765 467899999999998765444   2567999999888899999999999999999


Q ss_pred             HHHHHhhhh
Q psy4640          95 NALSLASIL  103 (109)
Q Consensus        95 ~aI~~a~~~  103 (109)
                      .||+.|+..
T Consensus       117 ~aL~~~i~~  125 (150)
T d1wg7a_         117 TILNKILQL  125 (150)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998753

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.6e-16  Score=107.01  Aligned_cols=84  Identities=13%  Similarity=0.073  Sum_probs=65.4

Q ss_pred             ccCCceEEeeCCeEEEEcCCCCC----cccEEEEcCCeEE-eecCCCC-----------------------cccceeeEE
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEEE----KLLGSILLPSYKI-SPCSSDD-----------------------KVFRKFSFK   71 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d~----~p~G~I~L~~~~V-~~~~~~~-----------------------~~~k~~~F~   71 (109)
                      |-+ -|+||+++.|+||+++.+.    .+.|.|+|.++++ ..+..+.                       .....++|.
T Consensus        24 Wkr-RwFVL~~~~L~Yyk~~~~~~~~~~~kG~I~L~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~  102 (169)
T d1btka_          24 FKK-CLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQ  102 (169)
T ss_dssp             EEE-EEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEEEE
T ss_pred             ceE-EEEEEECCEEeeeccccccccccCccceEeccceEEEEeecccCCCCccccccccccccccccccccccccCcceE
Confidence            444 4799999999999977553    5889999999864 3332211                       123468999


Q ss_pred             EeeCCceEEEEEcCCHHHHHHHHHHHHHhhhhcc
Q psy4640          72 AEHANMRTYYFAADTRESMIQWMNALSLASILQN  105 (109)
Q Consensus        72 i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~~  105 (109)
                      |.+++ |+|||+|+|++|+++||++|+.|+....
T Consensus       103 I~t~~-rt~~l~A~s~eE~~~WI~aL~~~i~~~~  135 (169)
T d1btka_         103 VVYDE-GPLYVFSPTEELRKRWIHQLKNVIRYNS  135 (169)
T ss_dssp             EEETT-CCEEEEESCHHHHHHHHHHHHHHHTTCS
T ss_pred             EEeCC-cEEEEECCCHHHHHHHHHHHHHHHHhCc
Confidence            99876 8999999999999999999999987653

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=99.65  E-value=8.9e-17  Score=102.90  Aligned_cols=86  Identities=19%  Similarity=0.191  Sum_probs=66.0

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcc------cEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKL------LGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p------~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi   94 (109)
                      +++.|+||+++.|+||+++.+..+      .+.+.|..|.+....+  ...++|+|.|.+.+.++|+|+|+|++|+++||
T Consensus        32 Wkkrw~vL~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~i~~~~~~~~~l~a~s~~e~~~Wi  109 (123)
T d1wjma_          32 WQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFD--YRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWL  109 (123)
T ss_dssp             CEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTT--CSSCSSEEEEECSSSCEEEEECSSHHHHHHHH
T ss_pred             CcEEEEEEECCEEEEEecchhccccccccccccccccceeEEeccc--ccccCcEEEEEcCCCcEEEEECCCHHHHHHHH
Confidence            344689999999999997654433      4555666676665544  24678999999888899999999999999999


Q ss_pred             HHHHHhhhhccCCCC
Q psy4640          95 NALSLASILQNSSTG  109 (109)
Q Consensus        95 ~aI~~a~~~~~~~~~  109 (109)
                      +||+.|+..- |..|
T Consensus       110 ~aI~~a~~~~-P~~g  123 (123)
T d1wjma_         110 RVVNAAIASG-PSSG  123 (123)
T ss_dssp             HHHHHHHHHC-CCCC
T ss_pred             HHHHHHHhcC-CCCC
Confidence            9999887543 5544

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=5.3e-16  Score=99.47  Aligned_cols=77  Identities=10%  Similarity=0.022  Sum_probs=62.0

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      +++-|+||++++|+||+++.+  +.|.|+|.++. |.....    .++++|.+.+++.++|+|+|+|++|+++||+||+.
T Consensus        27 WkkR~fvL~~~~L~yy~~~~~--~~~~i~l~~~~~v~~~~~----~~~~~f~i~~~~~~~~~f~a~s~~e~~~W~~al~~  100 (119)
T d1omwa2          27 WQRRYFYLFPNRLEWRGEGEA--PQSLLTMEEIQSVEETQI----KERKCLLLKIRGGKQFVLQCDSDPELVQWKKELRD  100 (119)
T ss_dssp             CEEEEEEEETTEEEEECTTSC--CCEEEEGGGEEEEEEEES----SSCEEEEEEETTSCEEEEECSSHHHHHHHHHHHHH
T ss_pred             eEEEEEEEEcCeEEEEecccc--cCccceeccccccccccc----cccceEEEEcCCCcEEEEECCCHHHHHHHHHHHHH
Confidence            444589999999999997754  56789997664 444332    45689999888889999999999999999999999


Q ss_pred             hhhh
Q psy4640         100 ASIL  103 (109)
Q Consensus       100 a~~~  103 (109)
                      |+..
T Consensus       101 a~~~  104 (119)
T d1omwa2         101 AYRE  104 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8654

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.2e-16  Score=100.19  Aligned_cols=83  Identities=14%  Similarity=0.047  Sum_probs=60.4

Q ss_pred             cCCceEEeeCCe--EEEEcC--CCCCcccEEEEcCCeEEeecCCCC-cccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640          21 GSDLDSIGSRNG--LAVTDR--FEEEKLLGSILLPSYKISPCSSDD-KVFRKFSFKAEHANMRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        21 ~~~~~~vL~~~~--L~yyk~--~~d~~p~G~I~L~~~~V~~~~~~~-~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~   95 (109)
                      +++-|+||.++.  +|||.+  +.+..|.|.|+|.++++....+.. ..++.+.|.+.++ .|+|+|+|+|++|+++||+
T Consensus        25 WkkRwfvL~~~~~~~yy~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~~~-~r~~~f~A~s~~e~~~Wv~  103 (126)
T d1wi1a_          25 WKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKE-GDTVIFASDDEQDRILWVQ  103 (126)
T ss_dssp             CEEEEEEEEEEETTEEEEEECCSSSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEECS-SCEEEEECSSHHHHHHHHH
T ss_pred             ceEEEEEEeCCceEEEEEcccccccccceeeeeeceeeeeeccccccccccceeEEeccC-CeEEEEEECCHHHHHHHHH
Confidence            344589998654  555544  345678999999999876554422 2244566777655 5899999999999999999


Q ss_pred             HHHHhhhhc
Q psy4640          96 ALSLASILQ  104 (109)
Q Consensus        96 aI~~a~~~~  104 (109)
                      ||..|+...
T Consensus       104 al~~a~~~~  112 (126)
T d1wi1a_         104 AMYRATGQS  112 (126)
T ss_dssp             HHHHHHTCS
T ss_pred             HHHHHHHhh
Confidence            999988544

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.6e-15  Score=94.39  Aligned_cols=75  Identities=16%  Similarity=0.023  Sum_probs=59.6

Q ss_pred             CCceEEeeCC-------eEEEEcCC-----CCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHH
Q psy4640          22 SDLDSIGSRN-------GLAVTDRF-----EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES   89 (109)
Q Consensus        22 ~~~~~vL~~~-------~L~yyk~~-----~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e   89 (109)
                      ++-|+||++.       .|+||+++     ....|.|.|+|.+|.......  ..+++|+|.|.+++ |+|+|+|+|++|
T Consensus        15 kkR~fvL~~~~~~~~~~~L~yy~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~~~~~f~i~t~~-r~~~l~A~s~~e   91 (103)
T d1qqga1          15 HKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRA--DSKNKHLVALYTRD-EHFAIAADSEAE   91 (103)
T ss_dssp             CEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEEC--CSSCSSEEEEEESS-CEEEEECSSHHH
T ss_pred             CEEEEEEecccccCCccEEEEEcchhhhhcccccccceEecceeeEEeecc--cCCCceEEEEEeCC-eEEEEEcCCHHH
Confidence            3458999875       59999975     346789999999986433222  13567999999875 899999999999


Q ss_pred             HHHHHHHHHH
Q psy4640          90 MIQWMNALSL   99 (109)
Q Consensus        90 ~~~Wi~aI~~   99 (109)
                      +++||+||+.
T Consensus        92 ~~~Wi~al~~  101 (103)
T d1qqga1          92 QDSWYQALLQ  101 (103)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999986

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.7e-16  Score=97.93  Aligned_cols=80  Identities=18%  Similarity=0.251  Sum_probs=60.7

Q ss_pred             CCceEEeeCCe--EEEEc-CCCCCcccEEEEcCCeEEeecCCC------CcccceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy4640          22 SDLDSIGSRNG--LAVTD-RFEEEKLLGSILLPSYKISPCSSD------DKVFRKFSFKAEHANMRTYYFAADTRESMIQ   92 (109)
Q Consensus        22 ~~~~~vL~~~~--L~yyk-~~~d~~p~G~I~L~~~~V~~~~~~------~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~   92 (109)
                      ++-|+||+++.  |+||. +..+..|.|.|+|.+|.|..+...      ....+.++|.|.+++.|.|+|+|+|++|+++
T Consensus        28 kkR~fvL~~~~~~~~~~~~~~~~~~p~~~i~L~~~~i~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~f~a~s~ee~~~  107 (116)
T d1x1ga1          28 KVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAE  107 (116)
T ss_dssp             EEEEEEEEESSCEEEEECSSSCCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHH
T ss_pred             ceEEEEEECCCcEEEEeccccccccceeEEEcCCCEEEEecccCcccccccccccceeEEEeCCCeEEEEECCCHHHHHH
Confidence            33578998755  44443 445678999999999987554331      1224467899998888999999999999999


Q ss_pred             HHHHHHHhh
Q psy4640          93 WMNALSLAS  101 (109)
Q Consensus        93 Wi~aI~~a~  101 (109)
                      ||+||+.++
T Consensus       108 Wi~ai~~~t  116 (116)
T d1x1ga1         108 WIEAIKKLT  116 (116)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHhhC
Confidence            999999874

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=2.4e-16  Score=101.02  Aligned_cols=80  Identities=16%  Similarity=0.129  Sum_probs=62.2

Q ss_pred             cCCceEEeeCCeEEEEcCCCCCcccEEE--------EcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy4640          21 GSDLDSIGSRNGLAVTDRFEEEKLLGSI--------LLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ   92 (109)
Q Consensus        21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I--------~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~   92 (109)
                      +++.|+||+++.|+||+++.+.++.+.|        .+.++.+....+  ...++++|.|.+++.++|+|+|+|++|+++
T Consensus        32 W~kr~~vL~~~~L~yy~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~f~a~s~~d~~~  109 (122)
T d1droa_          32 WDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASD--YTKKKHVLRVKLANGALFLLQAHDDTEMSQ  109 (122)
T ss_dssp             CEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCS--SSSSTTEEEEECSSSCEEEEECSSSHHHHH
T ss_pred             ceEEEEEEeCCEEEEEcCcccccccCcccccccceEeccceEEEeccc--cccccceEEEECCCCcEEEEECCCHHHHHH
Confidence            3346899999999999998776655444        444454443322  245679999998888999999999999999


Q ss_pred             HHHHHHHhhh
Q psy4640          93 WMNALSLASI  102 (109)
Q Consensus        93 Wi~aI~~a~~  102 (109)
                      ||.||+.++.
T Consensus       110 Wv~al~~~~~  119 (122)
T d1droa_         110 WVTSLKAQSD  119 (122)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999999874

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.5e-16  Score=103.45  Aligned_cols=75  Identities=13%  Similarity=0.069  Sum_probs=61.3

Q ss_pred             CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      ++=|+||++++|+||+++.+..+.|.|+|..+.....      ..+++|.|.+++ |+|+|+|++ .|+++||.||+.++
T Consensus        63 kkR~FvL~~~~L~YYkd~~~~~~kG~I~L~~~~~v~~------~~~~~F~I~t~~-Rty~l~a~~-~d~~~Wv~aI~~v~  134 (147)
T d1w1ha_          63 RRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQELRPEA------KNFKTFFVHTPN-RTYYLMDPS-GNAHKWCRKIQEVW  134 (147)
T ss_dssp             EEEEEEEETTTEEEEEETTTTEEEEEECCCTTCEEEE------EETTEEEEECSS-CEEEEECTT-SCHHHHHHHHHHHH
T ss_pred             eEEEEEEcCCeeEEEeCCCcccccceEEecccccccc------ccCceEEEecCc-eEEEEEcCh-HHHHHHHHHHHHHH
Confidence            3347899999999999999999999999987653221      335799999876 899999866 68999999999886


Q ss_pred             hhc
Q psy4640         102 ILQ  104 (109)
Q Consensus       102 ~~~  104 (109)
                      ...
T Consensus       135 ~~~  137 (147)
T d1w1ha_         135 RQR  137 (147)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.8e-15  Score=94.65  Aligned_cols=85  Identities=12%  Similarity=0.089  Sum_probs=63.1

Q ss_pred             ccccCCceEEeeC-CeEEEEcCCCCCcccEEEEcCCeEEeecCC-CCcccceeeEEEee---CCceEEEEEcCCHHHHHH
Q psy4640          18 KSVGSDLDSIGSR-NGLAVTDRFEEEKLLGSILLPSYKISPCSS-DDKVFRKFSFKAEH---ANMRTYYFAADTRESMIQ   92 (109)
Q Consensus        18 ~~~~~~~~~vL~~-~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~-~~~~~k~~~F~i~~---~~~r~y~fsA~s~~e~~~   92 (109)
                      +.|.+ -|+||++ +.|+||+++.+..+.|.|+|..+.+..+.. ....+++++|.|..   ...+.|+|+|+|++|+++
T Consensus        21 k~Wk~-RwfvL~~~~~l~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~f~a~s~~e~~~   99 (118)
T d1unqa_          21 KTWRP-RYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREE   99 (118)
T ss_dssp             CCEEE-EEEEEETTSEEEEESSCCCSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHH
T ss_pred             CCcEE-EEEEEeccceeEEEeeccCccccccccccceEEeecccccccccCCceEEEEeccccceeEEEEEeCCHHHHHH
Confidence            33444 4899976 589999999899999999997765432211 11124678999864   334679999999999999


Q ss_pred             HHHHHHHhhhh
Q psy4640          93 WMNALSLASIL  103 (109)
Q Consensus        93 Wi~aI~~a~~~  103 (109)
                      ||+||+.|+..
T Consensus       100 Wi~ai~~~~~~  110 (118)
T d1unqa_         100 WTTAIQTVADG  110 (118)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=1.4e-11  Score=80.38  Aligned_cols=80  Identities=10%  Similarity=0.063  Sum_probs=63.9

Q ss_pred             eEEeeCCeEEEEcCCCCC---cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640          25 DSIGSRNGLAVTDRFEEE---KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS  101 (109)
Q Consensus        25 ~~vL~~~~L~yyk~~~d~---~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~  101 (109)
                      +.+|-++.|.|+|.....   .-.+.|+|.++.|...++.  ...+|+|.|..+..++|.|.|.|++|+++||++|++++
T Consensus        48 ~~fLF~~~Ll~~k~~~~~~~~~~k~~i~l~~~~v~~~~~~--~~~~~~f~i~~~~~~~~~l~a~s~eek~~Wv~~L~~~i  125 (132)
T d1v61a_          48 YFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEI--EGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLT  125 (132)
T ss_dssp             EEEECSSCEEEEECSSSSSCCEEEEEECTTTCBCSTTCSS--SSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHH
T ss_pred             EEEEeCCEEEEEEEcCCCceeEEeeecchhhccccccccc--cCccceEEEeCCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            578999999999954332   3479999999998765443  25578999987767899999999999999999999987


Q ss_pred             hhccC
Q psy4640         102 ILQNS  106 (109)
Q Consensus       102 ~~~~~  106 (109)
                      +.-.+
T Consensus       126 ~~~~~  130 (132)
T d1v61a_         126 KSGPS  130 (132)
T ss_dssp             TTSCS
T ss_pred             hcCCC
Confidence            55443

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=1.2e-08  Score=63.56  Aligned_cols=77  Identities=13%  Similarity=0.083  Sum_probs=57.9

Q ss_pred             ceEEeeCCeEEEEcC-CCC---CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640          24 LDSIGSRNGLAVTDR-FEE---EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL   99 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~-~~d---~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~   99 (109)
                      .+..|=.+.|.+-+- +..   -.....|+|.++.|..+++.+  ..+++|.|..+. ++|.|+|+|++|..+||++|+.
T Consensus        24 ~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~l~~~~v~~~~d~~--~~~n~f~i~~~~-~~~~~~a~s~~eK~~W~~~l~~  100 (109)
T d1zc3b1          24 VHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNP--PMKDMFKLLMFP-ESRIFQAENAKIKREWLEVLEE  100 (109)
T ss_dssp             EEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECCBT--TBSSEEEEEETT-EEEEEECSSHHHHHHHHHHHHH
T ss_pred             EEEEEecCEEEEEEEcCCcceEEEeeeEEeccceEEEEeeccc--ccceEEEEccCC-CEEEEEECCHHHHHHHHHHHHH
Confidence            355666666665542 221   245689999999987665533  456899998776 7999999999999999999999


Q ss_pred             hhhh
Q psy4640         100 ASIL  103 (109)
Q Consensus       100 a~~~  103 (109)
                      |...
T Consensus       101 a~~~  104 (109)
T d1zc3b1         101 TKRA  104 (109)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.8e-08  Score=63.97  Aligned_cols=78  Identities=14%  Similarity=0.139  Sum_probs=60.0

Q ss_pred             CCceEEeeCCeEEEEcCCCCCc-----------ccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHH
Q psy4640          22 SDLDSIGSRNGLAVTDRFEEEK-----------LLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESM   90 (109)
Q Consensus        22 ~~~~~vL~~~~L~yyk~~~d~~-----------p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~   90 (109)
                      +.-+..|=++.|.|.+-..+..           -.+.|+|.++.|..+.+.+  ..+++|.|..+..+.|.|+|+|++|.
T Consensus        40 k~r~~fLF~d~Li~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~~~--~~~~~f~i~~~~~~~~~l~a~s~~eK  117 (133)
T d1dbha2          40 HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTN--EYKHAFEIILKDENSVIFSAKSAEEK  117 (133)
T ss_dssp             SCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSS--SCCSEEEECCTTSCCEEEECSSHHHH
T ss_pred             CeEEEEEecCeEEEEEecccccccccCCCccEEEEeeeecccccccccCCCc--ccccceeEEcCCCcEEEEEECCHHHH
Confidence            3446788888888887443322           3589999999997665432  45789999877667899999999999


Q ss_pred             HHHHHHHHHhh
Q psy4640          91 IQWMNALSLAS  101 (109)
Q Consensus        91 ~~Wi~aI~~a~  101 (109)
                      .+||++|..+.
T Consensus       118 ~~W~~~l~~~~  128 (133)
T d1dbha2         118 NNWMAALISLQ  128 (133)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998753

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.67  E-value=8.9e-08  Score=63.56  Aligned_cols=79  Identities=16%  Similarity=0.147  Sum_probs=59.0

Q ss_pred             ceEEeeCCeEEEEcCCCCC----cccEEEEcCCeEEeecCCCCc----ccceeeEEEeeC-CceEEEEEcCCHHHHHHHH
Q psy4640          24 LDSIGSRNGLAVTDRFEEE----KLLGSILLPSYKISPCSSDDK----VFRKFSFKAEHA-NMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d~----~p~G~I~L~~~~V~~~~~~~~----~~k~~~F~i~~~-~~r~y~fsA~s~~e~~~Wi   94 (109)
                      .+.+|=++.|.|++.....    ...+.|+|.++.|....+.+.    ..-+++|.|..+ +.++|.|.|+|++|..+||
T Consensus        46 r~~fLF~d~Ll~~k~~~~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~A~s~~eK~~W~  125 (162)
T d2dfka2          46 RVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWL  125 (162)
T ss_dssp             EEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEESSSSCEEEEECSSHHHHHHHH
T ss_pred             EEEEEeCCeEEEEEecCCCCCceEEccccchhhceeeecccccccccCccccceEEEEECCCCeEEEEEeCCHHHHHHHH
Confidence            3578999999998754332    467999999998876543211    122478999753 4578999999999999999


Q ss_pred             HHHHHhhh
Q psy4640          95 NALSLASI  102 (109)
Q Consensus        95 ~aI~~a~~  102 (109)
                      ++|+.+..
T Consensus       126 ~~l~~~~~  133 (162)
T d2dfka2         126 RAFREERK  133 (162)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=1.3e-07  Score=59.60  Aligned_cols=77  Identities=6%  Similarity=-0.041  Sum_probs=51.7

Q ss_pred             eEEeeC-CeEEEEcCCCC--CcccEEEEcCCeE-EeecCCC-------CcccceeeEEEee-CCceEEEEEcCCHHHHHH
Q psy4640          25 DSIGSR-NGLAVTDRFEE--EKLLGSILLPSYK-ISPCSSD-------DKVFRKFSFKAEH-ANMRTYYFAADTRESMIQ   92 (109)
Q Consensus        25 ~~vL~~-~~L~yyk~~~d--~~p~G~I~L~~~~-V~~~~~~-------~~~~k~~~F~i~~-~~~r~y~fsA~s~~e~~~   92 (109)
                      +++|.. ..+.||++..+  ..+.|.|+|.++. |......       .......||.|.. ...|+++|.|+|+++++.
T Consensus        30 ~f~L~~d~~~i~~~~~~~~~~~~~~~i~i~~I~~V~~G~~s~~~~~~~~~~~~~~~FsIv~~~~~r~l~l~a~s~~~~~~  109 (119)
T d1maia_          30 FYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQH  109 (119)
T ss_dssp             EEEECTTSSEEEECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCCCEEEECSSHHHHHH
T ss_pred             EEEEcCCCCEEEEeCCCCCCCccceEEEHHHceEEEcCCCCchhhhcccCCCcCceEEEEEcCCCcEEEEEECCHHHHHH
Confidence            456654 45556665433  4467999998874 5442221       1112346899874 445899999999999999


Q ss_pred             HHHHHHHhh
Q psy4640          93 WMNALSLAS  101 (109)
Q Consensus        93 Wi~aI~~a~  101 (109)
                      ||.+|+...
T Consensus       110 Wv~~L~~L~  118 (119)
T d1maia_         110 WVQGLRKII  118 (119)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998743

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.9e-06  Score=55.70  Aligned_cols=82  Identities=17%  Similarity=0.150  Sum_probs=56.0

Q ss_pred             ccCCceEEeeCCeEEEEcCCCC-----------------CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEE
Q psy4640          20 VGSDLDSIGSRNGLAVTDRFEE-----------------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYF   82 (109)
Q Consensus        20 ~~~~~~~vL~~~~L~yyk~~~d-----------------~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~f   82 (109)
                      -|+..+..|=++.|.|=|...+                 -.....|+|.++.|....+.  ..-.+.|.+..++ +.|.|
T Consensus        36 ~~k~r~~FLFnD~Ll~tK~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~~~~d~--~~~~~~~~~~~~~-~~~~l  112 (142)
T d1ki1b2          36 NNKELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVLVKLPTDP--SGDEPIFHISHID-RVYTL  112 (142)
T ss_dssp             SCCCCEEEEESSEEEEEEEECC-------CCSCSSCCEEEECSSCEEGGGEEEECCSSS--CCC---CEEEETT-EEEEC
T ss_pred             CCCEEEEEEecCEEEEEEeccccceeccccccccCCceeEEEEcccchhhheeeccCCc--ccceeEEEecCCC-EEEEE
Confidence            3455667777777777543221                 12345688888887665442  2335678887665 89999


Q ss_pred             EcCCHHHHHHHHHHHHHhhhhc
Q psy4640          83 AADTRESMIQWMNALSLASILQ  104 (109)
Q Consensus        83 sA~s~~e~~~Wi~aI~~a~~~~  104 (109)
                      .|+|++|..+||++|+.|+...
T Consensus       113 ~a~s~~ek~~W~~~I~~Ai~~~  134 (142)
T d1ki1b2         113 RAESINERTAWVQKIKAASELY  134 (142)
T ss_dssp             BCSSHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998754

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.3e-05  Score=50.09  Aligned_cols=76  Identities=7%  Similarity=0.016  Sum_probs=51.7

Q ss_pred             eEEeeCCeEEEEcCC--CC----CcccEEEEcCCeEEeecCCCCcccceeeEEEee----CCceEEEEEcCCHHHHHHHH
Q psy4640          25 DSIGSRNGLAVTDRF--EE----EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEH----ANMRTYYFAADTRESMIQWM   94 (109)
Q Consensus        25 ~~vL~~~~L~yyk~~--~d----~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~----~~~r~y~fsA~s~~e~~~Wi   94 (109)
                      +..|=++.|.|=|-.  ..    ......|++.++.+....+    ..++.|.|..    .....|.|.|.|++++++||
T Consensus        35 ~~FLF~d~Ll~~K~k~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~f~i~~~~~~~~~~~~~l~a~s~~eK~~W~  110 (121)
T d1ntya2          35 HLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVE----GDPCKFALWVGRTPTSDNKIVLKASSIENKQDWI  110 (121)
T ss_dssp             EEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCCT----TCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHH
T ss_pred             EEEeeCCeEEEEEEecCCCCCceeEEEeeEEecceEEEEcCC----CCCceEEEEEecCCCCceEEEEECCCHHHHHHHH
Confidence            455556666665421  11    1345678888887765443    2356788742    23467999999999999999


Q ss_pred             HHHHHhhhhc
Q psy4640          95 NALSLASILQ  104 (109)
Q Consensus        95 ~aI~~a~~~~  104 (109)
                      ++|+.++..|
T Consensus       111 ~~I~~~i~eq  120 (121)
T d1ntya2         111 KHIREVIQER  120 (121)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9999988765

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=97.98  E-value=4e-05  Score=47.71  Aligned_cols=76  Identities=16%  Similarity=0.229  Sum_probs=51.8

Q ss_pred             CceEEeeCCeEEEEcCCCCC------------------cccEEEEcCCeEEeecCCCCcccceeeEEEeeC--CceEEEE
Q psy4640          23 DLDSIGSRNGLAVTDRFEEE------------------KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA--NMRTYYF   82 (109)
Q Consensus        23 ~~~~vL~~~~L~yyk~~~d~------------------~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~--~~r~y~f   82 (109)
                      ..+..|=++.|.+-|...+.                  .....|+|+...|......    .+..|.|.+.  +...|.|
T Consensus        18 er~vFLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~e~~~d----~~~~fli~~~~~~~~~y~l   93 (114)
T d1txda2          18 DLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVATD----NKALFVISMSDNGAQIYEL   93 (114)
T ss_dssp             CEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC-----CCEEEEEEECSSCEEEEEE
T ss_pred             EEEEEEecCeEEEEEecccccccccccccccccccceeeecCcEEcccEEEEEcCCC----CCCEEEEEecCCCceEEEE
Confidence            45667777777776643321                  1123688888777655332    2456777653  3468999


Q ss_pred             EcCCHHHHHHHHHHHHHhhh
Q psy4640          83 AADTRESMIQWMNALSLASI  102 (109)
Q Consensus        83 sA~s~~e~~~Wi~aI~~a~~  102 (109)
                      .|.|++|.+.||++|+.+..
T Consensus        94 ~A~s~~eK~~W~~~I~~~~~  113 (114)
T d1txda2          94 VAQTVSEKTVWQDLICRMAA  113 (114)
T ss_dssp             ECSSHHHHHHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999863

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.00022  Score=45.27  Aligned_cols=74  Identities=19%  Similarity=0.172  Sum_probs=46.9

Q ss_pred             ceEEeeCCeEEEEcCCCCC------------------cccEEEEcCCeEEeecCCCCcccceeeEEEee----CCceEEE
Q psy4640          24 LDSIGSRNGLAVTDRFEEE------------------KLLGSILLPSYKISPCSSDDKVFRKFSFKAEH----ANMRTYY   81 (109)
Q Consensus        24 ~~~vL~~~~L~yyk~~~d~------------------~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~----~~~r~y~   81 (109)
                      .+..|=++.|.|=+.....                  ...+.+.+....+.....     .+++|.+..    .....|.
T Consensus        43 r~~FLF~D~Ll~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~f~li~~~~~~~~~~~~  117 (140)
T d1xcga2          43 LHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT-----DKRAFFIICTSKLGPPQIYE  117 (140)
T ss_dssp             EEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSS-----CSSEEEEEECCSSSTTCEEE
T ss_pred             EEEEEecCeEEEEEecccceeeccccccccccccceeeecceEecceEEEecCCC-----CCCeEEEEEcCCCCCceEEE
Confidence            4566767777765543221                  122344454444443322     246777753    1246899


Q ss_pred             EEcCCHHHHHHHHHHHHHhhh
Q psy4640          82 FAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        82 fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      |+|+|++|..+||++|+.|+.
T Consensus       118 l~A~s~~eK~~Wi~~i~~aI~  138 (140)
T d1xcga2         118 LVALTSSDKNTWMELLEEAVR  138 (140)
T ss_dssp             EECSSHHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999875

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=0.00028  Score=45.61  Aligned_cols=57  Identities=21%  Similarity=0.194  Sum_probs=40.4

Q ss_pred             ccEEEEcCCeEEeecCCCCcccceeeEEEee-CCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640          44 LLGSILLPSYKISPCSSDDKVFRKFSFKAEH-ANMRTYYFAADTRESMIQWMNALSLASILQ  104 (109)
Q Consensus        44 p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~-~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~  104 (109)
                      ..+.|++.+..|....+.    ..+.|.|.. .....|.|.|.|+++.+.||++|+.+...+
T Consensus        73 ~k~~~~~~~~~v~~~~~~----~~~~f~~~~~~~~~~~~l~a~s~eeK~~W~~~I~~~l~~q  130 (147)
T d1kz7a2          73 YKQSLNMTAVGITENVKG----DTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQ  130 (147)
T ss_dssp             EEEEEEGGGEEEECCBTT----BTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EeeEEecCCceeEecCCC----CcceEEEEeCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence            357888888777654332    234455432 234789999999999999999999976543

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.99  E-value=0.00068  Score=42.67  Aligned_cols=75  Identities=13%  Similarity=0.085  Sum_probs=50.5

Q ss_pred             eEEeeCCeEEEEcCCCCC-----cccEEEEcCCeEEeecCCCCcccceeeEEEee--CCc----eEEEEEcCCHHHHHHH
Q psy4640          25 DSIGSRNGLAVTDRFEEE-----KLLGSILLPSYKISPCSSDDKVFRKFSFKAEH--ANM----RTYYFAADTRESMIQW   93 (109)
Q Consensus        25 ~~vL~~~~L~yyk~~~d~-----~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~--~~~----r~y~fsA~s~~e~~~W   93 (109)
                      +..|=++.|.|.|.....     ...+.|+|+++.|..... +    ...|.|..  ++.    .++.++|.|+++.+.|
T Consensus        29 ~vFLF~~~ll~~K~~~~~~~~~y~~K~~i~l~~~~v~e~~g-d----~~~F~i~~~~~~~~~~~~~~~~~a~s~~~K~~W  103 (119)
T d1fhoa_          29 YVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTT-D----EDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAW  103 (119)
T ss_dssp             EEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECT-T----CCEEEEECCSTTCCCBCCCCCSSSSCSHHHHHH
T ss_pred             EEEEEcCeEEEEEeccCCCCceEEEecEEECCceEEEEcCC-C----CcEEEEEeCCCCCCcceEEEEEecCCHHHHHHH
Confidence            456667777776643322     247899999998875432 1    24577643  221    2466778999999999


Q ss_pred             HHHHHHhhhhc
Q psy4640          94 MNALSLASILQ  104 (109)
Q Consensus        94 i~aI~~a~~~~  104 (109)
                      +++|+.+....
T Consensus       104 v~~I~e~~~~~  114 (119)
T d1fhoa_         104 LRDIAEEQEKY  114 (119)
T ss_dssp             HHHHHTCCHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999876544

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.01  E-value=0.026  Score=34.44  Aligned_cols=75  Identities=16%  Similarity=0.223  Sum_probs=52.7

Q ss_pred             cCCceEE---eeCCeEEEEcCCCCCcccEEEEcCCeEEee-cCCCCcccceeeEEEeeCC-ceEEEEEcCCHHHHHHHHH
Q psy4640          21 GSDLDSI---GSRNGLAVTDRFEEEKLLGSILLPSYKISP-CSSDDKVFRKFSFKAEHAN-MRTYYFAADTRESMIQWMN   95 (109)
Q Consensus        21 ~~~~~~v---L~~~~L~yyk~~~d~~p~G~I~L~~~~V~~-~~~~~~~~k~~~F~i~~~~-~r~y~fsA~s~~e~~~Wi~   95 (109)
                      +.+|..|   |.+..|..--    .+-...|||.=|.|.. ....|..  .-.|+|..|+ ..+-+|.|.+..+.+.|.+
T Consensus        24 ~~rW~rVl~~L~ed~Lt~s~----~~d~k~IPLKmcyvtR~~~~~D~E--nR~lElhSpDG~~t~iLR~kD~a~A~~WF~   97 (105)
T d2adza1          24 GERWQRVLLSLAEDALTVSP----LSEAKHVSLKMAYVSRRCTPTDPE--PRYLEICAADGQDAVFLRAKDEASARSWAG   97 (105)
T ss_dssp             CCCCEEEEEEEETTEEEEES----SCSCEEEETTTCEEEEECCSSCCS--SCEEEEEETTTTEEEEECCSSHHHHHHHHH
T ss_pred             ccceeeeeeecccceEEeec----ccccceeeeeeEEeeecccCCCCc--ccEEEEECCCCCceEEEEcCCHHHHHHHHH
Confidence            4445544   6788887653    2345789999888754 2222322  2479998765 4577899999999999999


Q ss_pred             HHHHhh
Q psy4640          96 ALSLAS  101 (109)
Q Consensus        96 aI~~a~  101 (109)
                      ||..++
T Consensus        98 Aihs~i  103 (105)
T d2adza1          98 AIQAQI  103 (105)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            998765

>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.58  E-value=0.076  Score=34.61  Aligned_cols=77  Identities=13%  Similarity=0.060  Sum_probs=56.7

Q ss_pred             EEeeCCeEEEEcCCCC--Ccc-----------------cEEEEcCCeEEeecCCCCcccceeeEEEeeCC-------ceE
Q psy4640          26 SIGSRNGLAVTDRFEE--EKL-----------------LGSILLPSYKISPCSSDDKVFRKFSFKAEHAN-------MRT   79 (109)
Q Consensus        26 ~vL~~~~L~yyk~~~d--~~p-----------------~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~-------~r~   79 (109)
                      +|++.-.++.||+...  ++.                 .-.||+....|......+ ....+.++|+|..       .++
T Consensus        55 FVFK~AVV~vcke~sk~KkKl~~~~~~~~~~e~d~~rFr~mIP~~alQVR~~~~~~-~es~~vwEiiH~kSe~egRpE~v  133 (162)
T d1foea2          55 FVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSAD-AEANAVCEIVHVKSESEGRPERV  133 (162)
T ss_dssp             EEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEECCCCTT-TTSCCEEEEEECCBTGGGBCCEE
T ss_pred             EEecceEEEEEcccchhhhhccCccccccccccCceeEEEEeeeeeeEeecccccC-CCcceEEEEEeecccccCCcceE
Confidence            5889999999997432  221                 237888877776544322 2457889998732       489


Q ss_pred             EEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640          80 YYFAADTRESMIQWMNALSLASIL  103 (109)
Q Consensus        80 y~fsA~s~~e~~~Wi~aI~~a~~~  103 (109)
                      |.|++.+.|..+..|++|+.....
T Consensus       134 fqlc~St~E~K~~flK~Ir~ilre  157 (162)
T d1foea2         134 FHLCCSSPESRKDFLKSVHSILRD  157 (162)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999986654

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.14  Score=31.73  Aligned_cols=78  Identities=8%  Similarity=0.046  Sum_probs=56.0

Q ss_pred             EeeCCeEEEEcCCCCCcccEEEEcCCe-EEeecCCC-CcccceeeEEEeeCCceEEEEEcC-CHHHHHHHHHHHHHhhhh
Q psy4640          27 IGSRNGLAVTDRFEEEKLLGSILLPSY-KISPCSSD-DKVFRKFSFKAEHANMRTYYFAAD-TRESMIQWMNALSLASIL  103 (109)
Q Consensus        27 vL~~~~L~yyk~~~d~~p~G~I~L~~~-~V~~~~~~-~~~~k~~~F~i~~~~~r~y~fsA~-s~~e~~~Wi~aI~~a~~~  103 (109)
                      .|+...|++-..+.+......|+|... +|+.+... ......+.+.|.+.+.|.+.|+-. +.++..+|.++|...+.+
T Consensus        33 ~lTnyrliF~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L~I~CKDfr~~~f~f~~e~~~~~~v~~~L~~~a~P  112 (125)
T d1zsqa1          33 TVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDIRNLRFAHKPEGRTRRSIFENLMKYAFP  112 (125)
T ss_dssp             EEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTTEEEEEECCGGGCCHHHHHHHHHHHSCT
T ss_pred             EEEeeEEEEEcCCCCccEEEEeccceeeeeeecccccccCCccccEEEEeccCeEEEEEEcCCccHHHHHHHHHHHhCcC
Confidence            678888888766666666778888654 35443321 112345789999999999999974 447788999999998865


Q ss_pred             c
Q psy4640         104 Q  104 (109)
Q Consensus       104 ~  104 (109)
                      .
T Consensus       113 ~  113 (125)
T d1zsqa1         113 V  113 (125)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.17  Score=31.55  Aligned_cols=35  Identities=6%  Similarity=0.060  Sum_probs=29.1

Q ss_pred             eeEEEeeC----CceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640          68 FSFKAEHA----NMRTYYFAADTRESMIQWMNALSLASI  102 (109)
Q Consensus        68 ~~F~i~~~----~~r~y~fsA~s~~e~~~Wi~aI~~a~~  102 (109)
                      .||.|...    +-+...|.|.|+++++.|++.|+..+.
T Consensus        87 ~~ftIvyg~~~v~l~~l~lVA~s~~~a~~W~~gL~~L~~  125 (131)
T d2zkmx3          87 KTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVK  125 (131)
T ss_dssp             TEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCcccceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            48999863    236888999999999999999988664