Psyllid ID: psy4641

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKENYGNLRCLCHCTIETTEDGSEEEQSHNH
Secondary Structure (PSIPRED)
cccEEEEccEEEEEEEEccccEEEEEEcccccccccccccEEEEccEEEEEEEEcccEEEEEEEHHHHHcccccccccccccccccccccccccccEEccccccEEEEEEEEEEcccEEEEEEEEcccccccccccccEEEEccEEEEEEEEEccEEEEEEcccccccccccccccccEEEEEEcccccHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHccc
Secondary Structure Prediction (SSPRO)
cEcccccEEEEEEEEEEcccEEEEEEEccHHHccccccccEEEEccEEEEEEEEEccEEEEEEEHHHHHHcHHHHcccccEEEEEEccEcccccccccEcccccEEEEEEEEEEEccEEEEEEEEccHHHHHHcccccEEEEccEEEEcccEcccEEEEEEcHHHHHHccHHHcccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccHHHHcccc
Coil and Loop (DISEMBL)
MFTGIVQGIGKVSAVFsyndfksmtiwfpsdlldgisiSCSVAINGVCLSVtkiegnyisfDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKEnygnlrclchctiettedgseeeqshnh
Flexible Loop (DISEMBL)
mftgivqgiGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDALnievdsqtqVIVNTVERVLkenygnlrcLCHCTIEttedgseeeqshnh
Low Complexity Region (SEG)
MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKENYGNLRCLCHCTIETTEDGSEEEQSHNH
Disordered region (IsUnstruct)
**TGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKENYGNLRCLCHCTIE**************
Disordered Region (DISOPRED)
MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVER********************************
Disordered Region (DISEMBL)
MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKENYGNLRCLCHCTIET*************
Disordered Region (DISPRO)
MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKENYGNLR**********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKENYGNLRCLCHCTIETTEDGSEEEQSHNH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
P0AFU9	213	Riboflavin synthase OS=Sh	yes	N/A	0.895	0.962	0.497	9e-56
P0AFU8	213	Riboflavin synthase OS=Es	N/A	N/A	0.895	0.962	0.497	9e-56
P45273	204	Riboflavin synthase OS=Ha	yes	N/A	0.873	0.980	0.475	3e-50
Q8KA22	208	Riboflavin synthase OS=Bu	yes	N/A	0.899	0.990	0.436	2e-44
Q89AX1	212	Riboflavin synthase OS=Bu	yes	N/A	0.873	0.943	0.425	2e-41
P57212	208	Riboflavin synthase OS=Bu	yes	N/A	0.899	0.990	0.393	6e-38
Q9PJZ1	198	Riboflavin synthase OS=Ch	yes	N/A	0.860	0.994	0.436	3e-36
Q9Z820	200	Riboflavin synthase OS=Ch	yes	N/A	0.847	0.97	0.407	2e-33
O84410	199	Riboflavin synthase OS=Ch	yes	N/A	0.847	0.974	0.403	1e-31
O67604	207	Riboflavin synthase OS=Aq	yes	N/A	0.860	0.951	0.343	1e-28

>sp|P0AFU9|RISA_SHIFL Riboflavin synthase OS=Shigella flexneri GN=ribE PE=3 SV=1

 Score =  216 bits (551), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 103/207 (49%), Positives = 146/207 (70%), Gaps = 2/207 (0%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQG  K+ ++    +F++  +  P  +LDG+    SVA NG CL+VT+I GN++S
Sbjct: 1   MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD++ ETL+ITNL  + V  +VN+ER+AK + E+GGH +SGHI+  A V  I   E N +
Sbjct: 61  FDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           +  ++ +  LMKY+ YKG++ IDGISLT+G+V    F VHLIPET+E+TT+ KK +G  +
Sbjct: 121 IWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARV 180

Query: 181 NIEVDSQTQVIVNTVERVL--KENYGN 205
           NIE+D QTQ +V+TVERVL  +EN  N
Sbjct: 181 NIEIDPQTQAVVDTVERVLAARENAMN 207

Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2-butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The alpha subunit catalyzes the dismutation of 6,7-dimethyl-8-lumazine to riboflavin and 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione.
Shigella flexneri (taxid: 623)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 9

>sp|P0AFU8|RISA_ECOLI Riboflavin synthase OS=Escherichia coli (strain K12) GN=ribC PE=1 SV=1

 Score =  216 bits (551), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 103/207 (49%), Positives = 146/207 (70%), Gaps = 2/207 (0%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQG  K+ ++    +F++  +  P  +LDG+    SVA NG CL+VT+I GN++S
Sbjct: 1   MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD++ ETL+ITNL  + V  +VN+ER+AK + E+GGH +SGHI+  A V  I   E N +
Sbjct: 61  FDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           +  ++ +  LMKY+ YKG++ IDGISLT+G+V    F VHLIPET+E+TT+ KK +G  +
Sbjct: 121 IWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARV 180

Query: 181 NIEVDSQTQVIVNTVERVL--KENYGN 205
           NIE+D QTQ +V+TVERVL  +EN  N
Sbjct: 181 NIEIDPQTQAVVDTVERVLAARENAMN 207

Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2-butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The alpha subunit catalyzes the dismutation of 6,7-dimethyl-8-lumazine to riboflavin and 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione.

Escherichia coli (strain K12) (taxid: 83333)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

>sp|P45273|RISA_HAEIN Riboflavin synthase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ribE PE=3 SV=1

 Score =  198 bits (503), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 139/200 (69%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQG   + ++    +F++  +    ++   + I  S+A NGVCL+VT+I G+ +S
Sbjct: 1   MFTGIVQGTAPIHSIKEKANFRTQVVKLLPEMRKDLEIGASIANNGVCLTVTEINGDLVS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD++ ETLKITNL  V V  +VN+ER+ +M TE+GGH LSGHI   A +  I A E N +
Sbjct: 61  FDLMQETLKITNLGTVKVGDYVNIERAMQMGTEIGGHLLSGHIYCTAKISDIIASENNRQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           +  ++ +  +MKY+  KG+VA+DGISLTIG+V +  F V+LIPET+++T M ++ VGD +
Sbjct: 121 IWFELPSADVMKYILTKGFVAVDGISLTIGEVRDTQFCVNLIPETLQRTLMGRRKVGDIV 180

Query: 181 NIEVDSQTQVIVNTVERVLK 200
           NIE+D QTQ IV+TVE  L+
Sbjct: 181 NIEIDPQTQAIVDTVENYLQ 200

Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2-butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The alpha subunit catalyzes the dismutation of 6,7-dimethyl-8-lumazine to riboflavin and 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

>sp|Q8KA22|RISA_BUCAP Riboflavin synthase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=ribE PE=3 SV=1

 Score =  178 bits (452), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 136/206 (66%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIV GI +V ++    +F + T+ F S LL  + I  SVA NG CL+V  I   ++ 
Sbjct: 1   MFTGIVNGIARVVSINKKKNFHTYTVNFSSILLKNLKIGDSVAHNGCCLTVKYINCPHVV 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD++  T+  TNL  + +  +VN+ERS K   E+GGH +SGHI++   +  I  L+KNY 
Sbjct: 61  FDIMKITIANTNLGVLNIGDYVNIERSLKYGDEMGGHIISGHIMNTGEISKISKLDKNYI 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           +  ++ + SLMKY+FYKG++AIDGISLTI  + ++ F V +IPET+  TT+  K +G  +
Sbjct: 121 LWCKVKDLSLMKYIFYKGFIAIDGISLTINNIIKNEFCVSIIPETLSSTTIGFKKIGQLV 180

Query: 181 NIEVDSQTQVIVNTVERVLKENYGNL 206
           NIE+D  TQ+IV+T +R++K++   L
Sbjct: 181 NIEIDFYTQIIVDTTKRLIKKDISTL 206

Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2-butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The alpha subunit catalyzes the dismutation of 6,7-dimethyl-8-lumazine to riboflavin and 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione.

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

>sp|Q89AX1|RISA_BUCBP Riboflavin synthase OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=ribE PE=3 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/200 (42%), Positives = 125/200 (62%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIV+G+GKV  +          +   ++L+  + +  S++ NG CL+V  I      
Sbjct: 1   MFTGIVRGLGKVVKILKEKKISQWEVETSNELVKNLMLGASISCNGCCLTVRNIFRTIFC 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
            D++ ETL+ T+L  + V Q++NLERS K   EVGGH +SGHII    V   + L  N  
Sbjct: 61  VDIVEETLRSTSLNTIIVGQYINLERSIKFGEEVGGHLVSGHIITTGVVSDKKELFSNQE 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           + I ++    +KY FYKG+V +DGISLTIG +  + F V LIPET+ +TT+ +K +GD +
Sbjct: 121 LWISLSASFFIKYFFYKGFVCVDGISLTIGSIKNNAFCVFLIPETILRTTIGQKIIGDVV 180

Query: 181 NIEVDSQTQVIVNTVERVLK 200
           NIE+D  TQ+ V++VER+LK
Sbjct: 181 NIEIDFYTQITVDSVERLLK 200

Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2-butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The alpha subunit catalyzes the dismutation of 6,7-dimethyl-8-lumazine to riboflavin and 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione.

Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) (taxid: 224915)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

>sp|P57212|RISA_BUCAI Riboflavin synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=ribE PE=3 SV=1

 Score =  157 bits (397), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 81/206 (39%), Positives = 125/206 (60%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGI+ G   +  +         T+  PS+L   + +  S++ NG CL+V  I  ++I 
Sbjct: 1   MFTGIINGTATIVYIEKKKKKYRYTVELPSNLSKNLKLGDSISHNGCCLTVKLINNSFII 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
            DVI ETLK TNL  + +   +N+ERS K   E+GGH +SGH+++ A +  +   + N  
Sbjct: 61  CDVIQETLKSTNLGILNIGDSINIERSIKYGDEIGGHIISGHVMNTAEISKMSKSDNNCV 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           + ++M N SLMKY+FYKG++ +DGISLT+  + ++ F V++IP T   TT+  K  G  +
Sbjct: 121 IWLKMNNMSLMKYIFYKGFICVDGISLTVNDIIKNEFCVNIIPYTFLFTTIKDKKNGSLV 180

Query: 181 NIEVDSQTQVIVNTVERVLKENYGNL 206
           NIE+D  TQ IV+T ER++  N  +L
Sbjct: 181 NIEIDFYTQTIVDTTERLINNNLKSL 206

Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2-butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The alpha subunit catalyzes the dismutation of 6,7-dimethyl-8-lumazine to riboflavin and 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione.

Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9PJZ1|RISA_CHLMU Riboflavin synthase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=ribE PE=3 SV=1

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 126/206 (61%), Gaps = 9/206 (4%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIW-FPSDLLDGISISCSVAINGVCLSVTKIEGNYI 59
           MF+GI+Q + +V  +  Y D  SM I  F  +L+DG+  S S+A++G+CL++ K E   +
Sbjct: 1   MFSGIIQEVARVDLIHHYGD--SMEIGIFARNLVDGVPGS-SIAVDGICLTLVKREFELL 57

Query: 60  SFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNY 119
            FDV  ET+  T +K   V   VNLERS ++  E+GGHF+SGH   V  V  I A+EK+Y
Sbjct: 58  FFDVTEETMACTTIKNYTVGSMVNLERSVRLGDEIGGHFVSGH---VCGVGTIIAVEKSY 114

Query: 120 RMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDA 179
                 TN  L+ YV  KG++AIDGISLTI +V  D F V +IPET  +T++  K VG  
Sbjct: 115 MFFKAPTN--LVPYVLEKGFIAIDGISLTIAQVRGDIFSVSVIPETRARTSLGYKQVGSH 172

Query: 180 LNIEVDSQTQVIVNTVERVLKENYGN 205
           +N+E D  T++ V+TV R   E  G 
Sbjct: 173 VNMEPDMMTKMQVDTVMRFQAEKIGK 198

Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2-butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The alpha subunit catalyzes the dismutation of 6,7-dimethyl-8-lumazine to riboflavin and 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione.

Chlamydia muridarum (strain MoPn / Nigg) (taxid: 243161)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9Z820|RISA_CHLPN Riboflavin synthase OS=Chlamydia pneumoniae GN=ribE PE=3 SV=1

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/199 (40%), Positives = 119/199 (59%), Gaps = 5/199 (2%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MF+GI+Q +G+V    +  +  S+ I      +  +    SVA++GVCL++T    + I 
Sbjct: 1   MFSGIIQELGEVCFFEAQGNGLSLGIKSTPLFVTPLVTGDSVAVDGVCLTLTSCNESKIF 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FDVI ETL  T L        VNLE + KM   +GGH LSGH+   A +  I+     +R
Sbjct: 61  FDVIPETLACTTLGEKRCSDQVNLEAALKMGDSIGGHLLSGHVFGTAEIFLIKENRYYFR 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
                 +K L +Y+F KG++AIDGISLT+  V  D F V LIPET+++TT+ KK  G+ +
Sbjct: 121 -----GSKELSQYLFEKGFIAIDGISLTLVSVDSDTFSVGLIPETLQRTTLGKKREGERV 175

Query: 181 NIEVDSQTQVIVNTVERVL 199
           NIE+D  T++ V+TV+R+L
Sbjct: 176 NIEIDMSTKIQVDTVKRIL 194

Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2-butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The alpha subunit catalyzes the dismutation of 6,7-dimethyl-8-lumazine to riboflavin and 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione.

Chlamydia pneumoniae (taxid: 83558)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

>sp|O84410|RISA_CHLTR Riboflavin synthase OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=ribE PE=3 SV=1

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 120/203 (59%), Gaps = 9/203 (4%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIW-FPSDLLDGISISCSVAINGVCLSVTKIEGNYI 59
           MF+GI+Q + +V  +    D  SM I  F   L+D +  S S +++G+CL++ K +   +
Sbjct: 1   MFSGIIQEVARVDLIHHLRD--SMEIGVFARKLIDVVPGS-SFSVDGICLTLVKRQYELL 57

Query: 60  SFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNY 119
            FDV  ET+  T +K   V   VNLERS ++  E+GGHF+SGH   V  +  I A+EK+Y
Sbjct: 58  FFDVTEETMAWTTIKDYTVGTMVNLERSVRLGDEIGGHFVSGH---VCGIGTIIAIEKSY 114

Query: 120 RMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDA 179
                  N  L+ Y+  KG++AIDGISLTI +V  D F V LIPET  +T++  K VG  
Sbjct: 115 MFFKAPAN--LVPYILEKGFIAIDGISLTIARVKGDIFSVSLIPETRARTSLGYKQVGAH 172

Query: 180 LNIEVDSQTQVIVNTVERVLKEN 202
           +N+E D  T++ V+T+ R   E 
Sbjct: 173 VNMEPDMMTKMQVDTIMRFHAEK 195

Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2-butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The alpha subunit catalyzes the dismutation of 6,7-dimethyl-8-lumazine to riboflavin and 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione.

Chlamydia trachomatis (strain D/UW-3/Cx) (taxid: 272561)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

>sp|O67604|RISA_AQUAE Riboflavin synthase OS=Aquifex aeolicus (strain VF5) GN=ribE PE=3 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTG+V+ +GKV  +   +    +++      L+ + +  SV++NG CL+V  I+ + ++
Sbjct: 1   MFTGLVEDLGKVKNLTLSSKGAKLSV---ETKLEDVKLGDSVSVNGACLTVVDIKSSTLT 57

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FDV  ETLK TNL  +    +VNLER+ ++   +GGH + GH+   A V++   L ++Y 
Sbjct: 58  FDVSPETLKRTNLGKLKTGDYVNLERALRVGERLGGHIVQGHVDFTAPVKSFNFLGEHYE 117

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           + I++  +  + YV  KG +A+DGISLT+  V E+  ++++IP T + T +  K VGD L
Sbjct: 118 LVIEIPEEWSI-YVVEKGSIALDGISLTVNYVKENKVFINIIPHTYKSTNLQFKKVGDLL 176

Query: 181 NIEVDSQTQVIVNTVERVLKE 201
           N+E D   + ++N + ++ K+
Sbjct: 177 NVETDILGKYVINYLNKLKKK 197

Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2-butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The alpha subunit catalyzes the dismutation of 6,7-dimethyl-8-lumazine to riboflavin and 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
410085880	221	Riboflavin synthase [Morganella morganii	0.903	0.936	0.526	2e-58
421492066	221	RIBC [Morganella morganii subsp. morgani	0.903	0.936	0.526	3e-58
440230720	217	riboflavin synthase alpha chain [Serrati	0.899	0.949	0.529	2e-57
37526501	225	riboflavin synthase subunit alpha [Photo	0.877	0.893	0.532	8e-57
421783270	216	riboflavin synthase, alpha subunit [Serr	0.868	0.921	0.527	1e-56
157370430	216	riboflavin synthase subunit alpha [Serra	0.868	0.921	0.527	1e-56
448241986	216	riboflavin synthase, alpha subunit [Serr	0.868	0.921	0.527	2e-56
333926987	216	riboflavin synthase subunit alpha [Serra	0.868	0.921	0.522	2e-56
320539154	212	riboflavin synthase, alpha subunit [Serr	0.899	0.971	0.509	2e-56
253989402	218	riboflavin synthase alpha chain [Photorh	0.877	0.922	0.527	3e-56

>gi|410085880|ref|ZP_11282594.1| Riboflavin synthase [Morganella morganii SC01] gi|409767428|gb|EKN51504.1| Riboflavin synthase [Morganella morganii SC01]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/207 (52%), Positives = 148/207 (71%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQG G V A+    +F++ T+ FP D+L GI    SVA NG CL+VTKI+G+ IS
Sbjct: 1   MFTGIVQGKGPVVAIEEKENFRTHTVKFPPDMLAGIETGASVAHNGCCLTVTKIDGDLIS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD++ ETL++TNL ++     VNLER+AK   E+GGH +SGHI+  A +  I   E NY+
Sbjct: 61  FDLVKETLRLTNLGSIKTGDVVNLERAAKYGDEIGGHIMSGHIVTTAEIAKIFVSENNYQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           + +++ +K+LMKY+ +KG+V IDGISLTIG V  + F VHLIPET E+TT+ KK +GD +
Sbjct: 121 IWLRIEDKALMKYILHKGFVGIDGISLTIGDVVNNRFCVHLIPETRERTTLGKKRLGDKV 180

Query: 181 NIEVDSQTQVIVNTVERVLKENYGNLR 207
           NIE+D QTQ IV+T ERVL +    L+
Sbjct: 181 NIELDPQTQAIVDTTERVLAQKMQQLQ 207

Source: Morganella morganii SC01

Species: Morganella morganii

Genus: Morganella

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|421492066|ref|ZP_15939428.1| RIBC [Morganella morganii subsp. morganii KT] gi|455739556|ref|YP_007505822.1| Riboflavin synthase [Morganella morganii subsp. morganii KT] gi|400193826|gb|EJO26960.1| RIBC [Morganella morganii subsp. morganii KT] gi|455421119|gb|AGG31449.1| Riboflavin synthase [Morganella morganii subsp. morganii KT]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 109/207 (52%), Positives = 148/207 (71%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQG G V A+    +F++ T+ FP D+L GI    SVA NG CL+VTKI+G+ IS
Sbjct: 1   MFTGIVQGKGPVVAIEEKENFRTHTVKFPPDMLAGIETGASVAHNGCCLTVTKIDGDLIS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD++ ETL++TNL ++     VNLER+AK   E+GGH +SGHI+  A +  I   E NY+
Sbjct: 61  FDLVKETLRLTNLGSIKTGDVVNLERAAKYGDEIGGHIMSGHIVTTAEIAKIFVSENNYQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           + +++ +K+LMKY+ +KG+V IDGISLTIG V  + F VHLIPET E+TT+ KK +GD +
Sbjct: 121 IWLRIEDKALMKYILHKGFVGIDGISLTIGDVVNNRFCVHLIPETRERTTLGKKRLGDKV 180

Query: 181 NIEVDSQTQVIVNTVERVLKENYGNLR 207
           NIE+D QTQ IV+T ERVL +    L+
Sbjct: 181 NIELDPQTQAIVDTTERVLAQKMQQLQ 207

Source: Morganella morganii subsp. morganii KT

Species: Morganella morganii

Genus: Morganella

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|440230720|ref|YP_007344513.1| riboflavin synthase alpha chain [Serratia marcescens FGI94] gi|440052425|gb|AGB82328.1| riboflavin synthase alpha chain [Serratia marcescens FGI94]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 146/206 (70%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQGI  + AV    +F++  I  P +LL G+ +  SVA NG CL+VT +EGN +S
Sbjct: 1   MFTGIVQGIAPLVAVEEKPNFRTHVIEMPDELLPGLELGASVAHNGCCLTVTAVEGNRVS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD+I ETL++TNL ++ V   VN+ER+AK N E+GGH +SGHII  A +  I   E N +
Sbjct: 61  FDLIKETLRLTNLGSLTVGDKVNVERAAKFNDEIGGHLMSGHIICTAEIAKIFTSENNRQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           + ++M +  LMKYV +KG+V IDGISLTIG+V  + F VHLIPET+E+TT+ KK +GD +
Sbjct: 121 VWLRMPSADLMKYVLHKGFVGIDGISLTIGEVVNNRFCVHLIPETLERTTLGKKRLGDKV 180

Query: 181 NIEVDSQTQVIVNTVERVLKENYGNL 206
           NIE+D QTQ +V+TVERVL      L
Sbjct: 181 NIEIDPQTQAVVDTVERVLASREATL 206

Source: Serratia marcescens FGI94

Species: Serratia marcescens

Genus: Serratia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|37526501|ref|NP_929845.1| riboflavin synthase subunit alpha [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785932|emb|CAE14984.1| Riboflavin synthase alpha chain [Photorhabdus luminescens subsp. laumondii TTO1]

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 107/201 (53%), Positives = 148/201 (73%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQG   + A+   ++F++  + FP++LL GI    SVA NG CL+VTKIEG+ IS
Sbjct: 1   MFTGIVQGKAPLVAIDEKSNFRTHVVKFPAELLPGIETGASVANNGCCLTVTKIEGDEIS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD++ ETL++TNL  + +  +VNLER+AK   E+GGH +SGHII VA +  I   E N++
Sbjct: 61  FDLMKETLRLTNLGDLQLGDYVNLERAAKFGDEIGGHLMSGHIITVAEIAKIFTSENNHQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           +  ++ +K LMKY+ +KG++ IDGISLTIG V  + F VHLIPET+E+TT+ KK +G  +
Sbjct: 121 IWFRIHDKQLMKYILHKGFIGIDGISLTIGDVVNNRFCVHLIPETLERTTLGKKRLGQRV 180

Query: 181 NIEVDSQTQVIVNTVERVLKE 201
           NIE+DSQTQ IV+TVERVL +
Sbjct: 181 NIEIDSQTQAIVDTVERVLAQ 201

Source: Photorhabdus luminescens subsp. laumondii TTO1

Species: Photorhabdus luminescens

Genus: Photorhabdus

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|421783270|ref|ZP_16219720.1| riboflavin synthase, alpha subunit [Serratia plymuthica A30] gi|407754513|gb|EKF64646.1| riboflavin synthase, alpha subunit [Serratia plymuthica A30]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/199 (52%), Positives = 146/199 (73%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQG   + A+   ++F++  I  P++LL G+ +  SV+ NG CL+VT +EGN +S
Sbjct: 1   MFTGIVQGTAPLVAIDEKSNFRTHVIEMPAELLPGLELGASVSHNGCCLTVTAVEGNRVS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD+I ETL++TNL  +A+   VN+ER+AK N E+GGH +SGHII  A V  I   E N +
Sbjct: 61  FDLIKETLRLTNLGDLALGDVVNIERAAKFNDEIGGHLMSGHIICTAEVAKIYTSENNRQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           + ++M +  LMKYV +KG++ IDGISLTIG+V  + F VHLIPET+E+TT+ KK +GD +
Sbjct: 121 IWLRMPDAELMKYVLHKGFIGIDGISLTIGEVVNNRFCVHLIPETLERTTLGKKRLGDKV 180

Query: 181 NIEVDSQTQVIVNTVERVL 199
           NIE+D QTQ +V+TVERVL
Sbjct: 181 NIEIDPQTQAVVDTVERVL 199

Source: Serratia plymuthica A30

Species: Serratia plymuthica

Genus: Serratia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|157370430|ref|YP_001478419.1| riboflavin synthase subunit alpha [Serratia proteamaculans 568] gi|157322194|gb|ABV41291.1| riboflavin synthase, alpha subunit [Serratia proteamaculans 568]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/199 (52%), Positives = 146/199 (73%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQG   + A+   ++F++  I  P++LL G+ +  SV+ NG CL+VT +EGN +S
Sbjct: 1   MFTGIVQGTAPLVAIDEKSNFRTHVIEMPTELLPGLELGASVSHNGCCLTVTAVEGNRVS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD+I ETL++TNL  +A+   VN+ER+AK N E+GGH +SGHII  A V  I   E N +
Sbjct: 61  FDLIKETLRLTNLGELALGDVVNIERAAKFNDEIGGHLMSGHIICTAEVAKIYTSENNRQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           + ++M +  LMKYV +KG++ IDGISLTIG+V  + F VHLIPET+E+TT+ KK +GD +
Sbjct: 121 VWLRMPDAELMKYVLHKGFIGIDGISLTIGEVVNNRFCVHLIPETLERTTLGKKRLGDKV 180

Query: 181 NIEVDSQTQVIVNTVERVL 199
           NIE+D QTQ +V+TVERVL
Sbjct: 181 NIEIDPQTQAVVDTVERVL 199

Source: Serratia proteamaculans 568

Species: Serratia proteamaculans

Genus: Serratia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|448241986|ref|YP_007406039.1| riboflavin synthase, alpha subunit [Serratia marcescens WW4] gi|445212350|gb|AGE18020.1| riboflavin synthase, alpha subunit [Serratia marcescens WW4] gi|453065541|gb|EMF06502.1| riboflavin synthase subunit alpha [Serratia marcescens VGH107]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/199 (52%), Positives = 145/199 (72%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQG   + A+    +F++  I  P++LL G+ +  SVA NG CL+VT +EGN +S
Sbjct: 1   MFTGIVQGTAPLVAIDEKPNFRTHVIEMPAELLPGLELGASVAHNGCCLTVTAVEGNRVS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD+I ETL++TNL  +A+   VN+ER+AK N E+GGH +SGHII  A V  I   E N +
Sbjct: 61  FDLIKETLRLTNLGDLALGDIVNIERAAKFNDEIGGHLMSGHIICTAEVAKIYTSENNRQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           + ++M +  LMKYV +KG++ IDGISLTIG+V  + F VHLIPET+++TT+ KK +GD +
Sbjct: 121 VWLRMPDAELMKYVLHKGFIGIDGISLTIGEVVNNRFCVHLIPETLDRTTLGKKRLGDKV 180

Query: 181 NIEVDSQTQVIVNTVERVL 199
           NIE+D QTQ +V+TVERVL
Sbjct: 181 NIEIDPQTQAVVDTVERVL 199

Source: Serratia marcescens WW4

Species: Serratia marcescens

Genus: Serratia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|333926987|ref|YP_004500566.1| riboflavin synthase subunit alpha [Serratia sp. AS12] gi|333931941|ref|YP_004505519.1| riboflavin synthase subunit alpha [Serratia plymuthica AS9] gi|386328810|ref|YP_006024980.1| riboflavin synthase subunit alpha [Serratia sp. AS13] gi|333473548|gb|AEF45258.1| riboflavin synthase, alpha subunit [Serratia plymuthica AS9] gi|333491047|gb|AEF50209.1| riboflavin synthase, alpha subunit [Serratia sp. AS12] gi|333961143|gb|AEG27916.1| riboflavin synthase, alpha subunit [Serratia sp. AS13]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/199 (52%), Positives = 146/199 (73%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQG   + A+   ++F++  I  P++LL G+ +  SV+ NG CL+VT +EGN +S
Sbjct: 1   MFTGIVQGTAPLVAIDEKSNFRTHVIEMPAELLPGLELGASVSHNGCCLTVTAVEGNRVS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD+I ETL++TNL  +A+   VN+ER+AK N E+GGH +SGHII  A V  I   E N +
Sbjct: 61  FDLIKETLRLTNLGELALGDVVNIERAAKFNDEIGGHLMSGHIICTAEVAKIYTSENNRQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           + ++M +  LMKYV +KG++ IDGISLTIG+V  + F VHLIPET+++TT+ KK +GD +
Sbjct: 121 VWLRMPDAELMKYVLHKGFIGIDGISLTIGEVVNNRFCVHLIPETLDRTTLGKKRLGDKV 180

Query: 181 NIEVDSQTQVIVNTVERVL 199
           NIE+D QTQ +V+TVERVL
Sbjct: 181 NIEIDPQTQAVVDTVERVL 199

Source: Serratia sp. AS12

Species: Serratia sp. AS12

Genus: Serratia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|320539154|ref|ZP_08038825.1| riboflavin synthase, alpha subunit [Serratia symbiotica str. Tucson] gi|320030792|gb|EFW12800.1| riboflavin synthase, alpha subunit [Serratia symbiotica str. Tucson]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 146/206 (70%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQG   + A+    +F++  I  P++LL G+ +  SVA NG CL+VT +EG  +S
Sbjct: 1   MFTGIVQGTAPLVAIDEKPNFRTHVIEMPAELLSGLELGASVAHNGCCLTVTAVEGTRVS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD+I ETL +TNL  +A+   VN+ER+A+ N E+GGH +SGHII  A V  I A E N +
Sbjct: 61  FDLIKETLCLTNLGELALGDRVNIERAARFNDEIGGHLMSGHIICTAEVAKILASENNRQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           + ++M N SLMKY+ +KG++ IDGISLTIG+V  + F VHLIPET+E+TT+ +K +GD +
Sbjct: 121 IWLRMPNASLMKYILHKGFIGIDGISLTIGEVVNNRFCVHLIPETLERTTLGRKRLGDKV 180

Query: 181 NIEVDSQTQVIVNTVERVLKENYGNL 206
           NIE+D QTQ +V++VERVL      L
Sbjct: 181 NIEIDPQTQAVVDSVERVLASREARL 206

Source: Serratia symbiotica str. Tucson

Species: Serratia symbiotica

Genus: Serratia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|253989402|ref|YP_003040758.1| riboflavin synthase alpha chain [Photorhabdus asymbiotica] gi|253780852|emb|CAQ84014.1| riboflavin synthase alpha chain [Photorhabdus asymbiotica]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/201 (52%), Positives = 146/201 (72%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQG   + A+   N+F++  + FP++LL GI    SVA NG CL+VTK+EG+ IS
Sbjct: 1   MFTGIVQGKAPLVAIDEKNNFRTHVVKFPAELLPGIETGASVANNGCCLTVTKVEGDKIS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD++ ETL++TNL  + V  +VNLER+ K   E+GGH +SGHII VA +  I   E N++
Sbjct: 61  FDLMKETLRLTNLSDLQVGDYVNLERAIKFGDEIGGHLMSGHIITVAEISKIFTSENNHQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           +  ++ +K LMKY+ +KG++ IDGISLTIG V  + F VHLIPET+E+TT+ KK +G  +
Sbjct: 121 IWFRIHDKQLMKYIMHKGFIGIDGISLTIGDVVNNRFCVHLIPETLERTTLGKKRLGQKV 180

Query: 181 NIEVDSQTQVIVNTVERVLKE 201
           NIE+D QTQ IV+TVERVL +
Sbjct: 181 NIEIDPQTQAIVDTVERVLAQ 201

Source: Photorhabdus asymbiotica

Species: Photorhabdus asymbiotica

Genus: Photorhabdus

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
UNIPROTKB|P0AFU8	213	ribC "RibC" [Escherichia coli	0.895	0.962	0.497	3.1e-51
TIGR_CMR|SO_2296	206	SO_2296 "riboflavin synthase,	0.895	0.995	0.456	9.1e-45
TIGR_CMR|CHY_1474	213	CHY_1474 "riboflavin synthase,	0.851	0.915	0.335	1.2e-28
UNIPROTKB|G4MSU9	214	MGG_04586 "Riboflavin synthase	0.807	0.864	0.395	5e-28
ASPGD|ASPL0000012340	234	AN4231 [Emericella nidulans (t	0.855	0.837	0.351	8.2e-28
POMBASE|SPCC1450.13c	208	SPCC1450.13c "riboflavin synth	0.790	0.870	0.375	1e-27
TIGR_CMR|NSE_0853	200	NSE_0853 "riboflavin synthase,	0.799	0.915	0.356	9.4e-27
TIGR_CMR|GSU_1689	217	GSU_1689 "riboflavin synthase,	0.842	0.889	0.336	3.2e-26
TIGR_CMR|BA_4332	214	BA_4332 "riboflavin synthase,	0.864	0.925	0.32	6.6e-26
TIGR_CMR|CBU_0646	207	CBU_0646 "riboflavin synthase,	0.855	0.946	0.321	8.4e-26

UNIPROTKB|P0AFU8 ribC "RibC" [Escherichia coli K-12 (taxid:83333)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 103/207 (49%), Positives = 146/207 (70%)

Query:     1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
             MFTGIVQG  K+ ++    +F++  +  P  +LDG+    SVA NG CL+VT+I GN++S
Sbjct:     1 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVS 60

Query:    61 FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
             FD++ ETL+ITNL  + V  +VN+ER+AK + E+GGH +SGHI+  A V  I   E N +
Sbjct:    61 FDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQ 120

Query:   121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
             +  ++ +  LMKY+ YKG++ IDGISLT+G+V    F VHLIPET+E+TT+ KK +G  +
Sbjct:   121 IWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARV 180

Query:   181 NIEVDSQTQVIVNTVERVL--KENYGN 205
             NIE+D QTQ +V+TVERVL  +EN  N
Sbjct:   181 NIEIDPQTQAVVDTVERVLAARENAMN 207

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009231 "riboflavin biosynthetic process" evidence=IEA;IDA

GO:0004746 "riboflavin synthase activity" evidence=IEA;IDA

TIGR_CMR|SO_2296 SO_2296 "riboflavin synthase, alpha subunit" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 94/206 (45%), Positives = 137/206 (66%)

Query:     1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
             MFTGIVQ   +V A+   +   ++ + F  DL +G++I  SVA NGVCL+VT++  + + 
Sbjct:     1 MFTGIVQATCEVVAIHKKDGLNTLEVAFKPDLHEGLAIGASVANNGVCLTVTQVVDDRVF 60

Query:    61 FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
             FDV+ ETL++TNL  ++V Q VN+ERS    +E+GGH LSGHI   A V  I    ++Y 
Sbjct:    61 FDVVEETLRLTNLAGLSVGQHVNIERSLTFGSEIGGHILSGHIHTKAKVSHISHTAQHYD 120

Query:   121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
             + + +  K  M Y+ YKG+V ++G SLT+G+V +  F +HLIPET++ T + +  VGD  
Sbjct:   121 LTLSVEPK-WMNYILYKGFVGVNGCSLTVGEVTDCSFMLHLIPETLKLTNLGQCQVGDEF 179

Query:   181 NIEVDSQTQVIVNTVERVLKENYGNL 206
             NIE+DSQTQ IV+TVERVL + +  L
Sbjct:   180 NIEIDSQTQAIVDTVERVLAKRFNGL 205

GO:0004746 "riboflavin synthase activity" evidence=ISS

GO:0009231 "riboflavin biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1474 CHY_1474 "riboflavin synthase, alpha subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 66/197 (33%), Positives = 117/197 (59%)

Query:     1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
             MFTG+V+ +G+V  +    +  ++T+   + +L+ I +  S+A+NG CL+V     +Y  
Sbjct:     1 MFTGLVEELGRVREIKKSGESLTLTVEAKT-ILEDIKLGDSIAVNGTCLTVVNFGNDYFE 59

Query:    61 FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
              DV+ ET   TNLK ++    VNLER+ +    +GGH + GH+ +V  +  I+A E    
Sbjct:    60 ADVMPETYTKTNLKFLSPGDRVNLERTLRPTDRLGGHIVQGHVDEVGWIVEIRAKEIAKI 119

Query:   121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
             ++I+  ++  ++Y+  KG VA+DGISLT+  V+ D F V +IP T + TT+  K +G  +
Sbjct:   120 IKIK-ASEGFLQYLVPKGSVAVDGISLTVVDVYNDSFTVSIIPHTFKNTTLGYKTIGSPV 178

Query:   181 NIEVDSQTQVIVNTVER 197
             N+E D   + + + +++
Sbjct:   179 NLEADILAKYVFSFIKK 195

GO:0004746 "riboflavin synthase activity" evidence=ISS

GO:0009231 "riboflavin biosynthetic process" evidence=ISS

UNIPROTKB|G4MSU9 MGG_04586 "Riboflavin synthase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 76/192 (39%), Positives = 112/192 (58%)

Query:     1 MFTGIVQGIGKVSAVFSYNDF--KSMTIWFP--SDLLDGISISCSVAINGVCLSVTKIEG 56
             MFTGIV+ IG V+ +  ++     S+TI  P  S LL       S+A+NGVCL+VT    
Sbjct:     1 MFTGIVEEIGVVAELNPHDATGGTSLTISLPTGSSLLSDCHDGDSIAVNGVCLTVTSFTP 60

Query:    57 NYISFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALE 116
                +  V  ETL++T+L  +  D  VNLER+ + +T +GGHF+ GH+   A +   QA  
Sbjct:    61 TQFTVGVAPETLRVTDLGDLVKDSRVNLERAVRADTRMGGHFVQGHVDTTATIADKQADG 120

Query:   117 KNYRMEIQMTNKS-LMKYVFYKGYVAIDGISLTIGKVFE--DYFYVHLIPETMEKTTMSK 173
                 M  +    S ++KY+  KGYVA+DG SLT+ KV +   ++ V LI  T E+  +++
Sbjct:   121 NAVTMRFKPREGSDVLKYIVRKGYVALDGTSLTVTKVDDAAGWWEVMLIVYTQERVVLAQ 180

Query:   174 KAVGDALNIEVD 185
             K VGD +N+EVD
Sbjct:   181 KNVGDTVNVEVD 192

GO:0004746 "riboflavin synthase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0009231 "riboflavin biosynthetic process" evidence=ISS

ASPGD|ASPL0000012340 AN4231 [Emericella nidulans (taxid:162425)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 72/205 (35%), Positives = 117/205 (57%)

Query:     1 MFTGIVQGIGKVSAV------FSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKI 54
             MFTG+V+ IG VS++       S     S+TI     +L  + +  S+++NG CL+VT  
Sbjct:     1 MFTGLVETIGTVSSLEPLDTSASGGGGTSLTITDCDTILTDVQLGDSISVNGACLTVTAF 60

Query:    55 EGNYISFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQA 114
             E N+    V  ETL+ TNL ++     VNLER+ K  T +GGH + GH+  +A + A+  
Sbjct:    61 EKNWFKVGVAPETLRRTNLGSLTETSKVNLERAVKGETRMGGHIVQGHVDTIAKIIAMTP 120

Query:   115 LEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVF--ED-YFYVHLIPETMEKTTM 171
              E +  + +Q  + ++++Y+  KG++ +DG SLTI +V   ED +F + LI  T EK   
Sbjct:   121 DENSLVLRLQPRDPAVLRYIVEKGFITLDGASLTITQVKDGEDGWFEIMLIAYTQEKIVT 180

Query:   172 SKKAVGDALNIEVDSQTQVIVNTVE 196
             + K VGD +N+E+D   + +   V+
Sbjct:   181 AAKRVGDFVNVEIDVVAKYVEKGVQ 205

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009231 "riboflavin biosynthetic process" evidence=IEA

GO:0004746 "riboflavin synthase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

POMBASE|SPCC1450.13c SPCC1450.13c "riboflavin synthase" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 71/189 (37%), Positives = 108/189 (57%)

Query:     1 MFTGIVQGIGKVSAVFSY--NDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNY 58
             MFTG+V+ IG V  V     N F +M I  P  +LD      S+A+NG CL+VT  +  +
Sbjct:     1 MFTGLVEAIGVVKDVQGTIDNGF-AMKIEAPQ-ILDDCHTGDSIAVNGTCLTVTDFDRYH 58

Query:    59 ISFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKN 118
              +  +  E+L++TNL        VNLER+   +T +GGHF+ GH+  VA +  ++  +  
Sbjct:    59 FTVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEI--VEKKQDG 116

Query:   119 YRMEIQMTNKS--LMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAV 176
               ++     +   ++KY+ YKGY+A+DG SLTI  V +  F + +I  T  K  M+KK V
Sbjct:   117 EAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMAKKNV 176

Query:   177 GDALNIEVD 185
             GD +N+EVD
Sbjct:   177 GDLVNVEVD 185

GO:0004746 "riboflavin synthase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009231 "riboflavin biosynthetic process" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEP

TIGR_CMR|NSE_0853 NSE_0853 "riboflavin synthase, alpha subunit" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 66/185 (35%), Positives = 101/185 (54%)

Query:     1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
             MF GIVQ +G V+ +    D +        +L   + +  S+A NGVCL+VT I    + 
Sbjct:     1 MFKGIVQTLGLVTKLI-VRDKQIFLAVDAKELAQSVELGSSIACNGVCLTVTSITNTELE 59

Query:    61 FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
             F V  ET   TN  A+     VNLE S ++   + GHF+ GH+ +   + AI+   +++ 
Sbjct:    60 FYVSQETFSRTNFHALEKGSKVNLETSLRIGDTLDGHFVQGHVDETTMITAIEKTGESHV 119

Query:   121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
                 +T + +  ++ YKG V IDG SLT+ +VFE+ F V++IP T  +T    K VGD +
Sbjct:   120 FTFALT-EGISPFITYKGSVCIDGTSLTVNEVFENEFSVNIIPYTWSQTIFHSKKVGDKV 178

Query:   181 NIEVD 185
             N+E D
Sbjct:   179 NVESD 183

GO:0004746 "riboflavin synthase activity" evidence=ISS

GO:0009231 "riboflavin biosynthetic process" evidence=ISS

TIGR_CMR|GSU_1689 GSU_1689 "riboflavin synthase, alpha subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 67/199 (33%), Positives = 112/199 (56%)

Query:     1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
             MFTG+++ +G    +    +   + +     L + +++  SVA+NG CL+V    G  ++
Sbjct:     1 MFTGLIEDVGTARRLERRGEAARLAVATALPL-ESVNLGDSVAVNGACLTVVAKGGGELT 59

Query:    61 FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
             FDV  E+L+ T + ++A    VNLER+ ++   +GGH ++GH+  VA V   + +  N  
Sbjct:    60 FDVSPESLERTTIGSLATGAPVNLERALRLGDRLGGHLVTGHVDLVATVEGRREVSGNIL 119

Query:   121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
                +M +    +Y+  KG VA+DGISLT+ +V  D F V++IP T  KTT+     GD +
Sbjct:   120 FTFRMAS-GFSRYLVAKGSVAVDGISLTVNRVDADSFSVNVIPHTAVKTTLEHLRPGDRV 178

Query:   181 NIEVDSQTQVIVNTVERVL 199
             NIE D    ++   +ER+L
Sbjct:   179 NIETD----ILGKYIERLL 193

GO:0004746 "riboflavin synthase activity" evidence=ISS

GO:0009231 "riboflavin biosynthetic process" evidence=ISS

TIGR_CMR|BA_4332 BA_4332 "riboflavin synthase, alpha subunit" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 64/200 (32%), Positives = 112/200 (56%)

Query:     1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
             MFTGIV+ +G ++ +    +   +TI   + +L  + +  S+A+NG+CL+VT       +
Sbjct:     1 MFTGIVEELGTITNMQQSGEAMKLTI-HANKILSDVHLGDSIAVNGICLTVTSFTTTSFT 59

Query:    61 FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
              D + ET+K T+L+ +     VNLER+   N   GGHF+SGHI  +  +   +       
Sbjct:    60 VDAMPETMKSTSLRLLKSHSKVNLERAMAANGRFGGHFVSGHIDGIGTILNKKQHYNAIY 119

Query:   121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
              +I ++++ L++Y  +KG +A+DG SLTI  + E    + LIP T+ ++ + +K  GD +
Sbjct:   120 YKIAISDE-LLRYCLHKGSIAVDGTSLTIFDIDESSITISLIPHTVSESVIGEKNAGDIV 178

Query:   181 NIEVDSQTQVIVNTVERVLK 200
             NIE D   + I   + + +K
Sbjct:   179 NIECDMIGKYIERFITKPVK 198

GO:0004746 "riboflavin synthase activity" evidence=ISS

GO:0009231 "riboflavin biosynthetic process" evidence=ISS

TIGR_CMR|CBU_0646 CBU_0646 "riboflavin synthase, alpha subunit" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 64/199 (32%), Positives = 113/199 (56%)

Query:     1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
             MFTGI+   G++ ++ +  D   ++I   +   D + +  S+AI+G+C++VT+ +    S
Sbjct:     6 MFTGIINHCGEIRSMEALPDHTVLSI--DTQFSD-LQLGESIAIDGICVTVTQKKLGSFS 62

Query:    61 FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
              D+  ETL  T  +   +   +NLER+ ++   +GGHF+SGH+   A + + +   +  +
Sbjct:    63 CDLSPETLACTKARDYKIGSRINLERALRLTDRLGGHFVSGHVDQTAILESQKKHAEFIQ 122

Query:   121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
             M+ + +++    Y+  KG VA++G+SLT+  V  DYF V LIP T+E T ++    G  +
Sbjct:   123 MDFKNSSEERWNYLIPKGSVAVNGVSLTVNSVAGDYFSVMLIPHTLEHTNLNDLKEGQIV 182

Query:   181 NIEVDSQTQVIVNTVERVL 199
             NIE D  T++IV      L
Sbjct:   183 NIEFDLITKIIVQKTREAL 201

GO:0004746 "riboflavin synthase activity" evidence=ISS

GO:0009231 "riboflavin biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P45273	RISA_HAEIN	2, ., 5, ., 1, ., 9	0.475	0.8733	0.9803	yes	N/A
P38145	RISA_YEAST	2, ., 5, ., 1, ., 9	0.3383	0.8340	0.8025	yes	N/A
P57212	RISA_BUCAI	2, ., 5, ., 1, ., 9	0.3932	0.8995	0.9903	yes	N/A
P65327	RISA_MYCTU	2, ., 5, ., 1, ., 9	0.3756	0.8427	0.9601	yes	N/A
Q9Y7P0	RISA_SCHPO	2, ., 5, ., 1, ., 9	0.3796	0.7991	0.8798	yes	N/A
Q8KA22	RISA_BUCAP	2, ., 5, ., 1, ., 9	0.4368	0.8995	0.9903	yes	N/A
Q9PJZ1	RISA_CHLMU	2, ., 5, ., 1, ., 9	0.4368	0.8602	0.9949	yes	N/A
P50854	RISA_ACTPL	2, ., 5, ., 1, ., 9	0.3636	0.7903	0.8418	yes	N/A
P65328	RISA_MYCBO	2, ., 5, ., 1, ., 9	0.3756	0.8427	0.9601	yes	N/A
Q89AX1	RISA_BUCBP	2, ., 5, ., 1, ., 9	0.425	0.8733	0.9433	yes	N/A
O67604	RISA_AQUAE	2, ., 5, ., 1, ., 9	0.3432	0.8602	0.9516	yes	N/A
O84410	RISA_CHLTR	2, ., 5, ., 1, ., 9	0.4039	0.8471	0.9748	yes	N/A
Q44680	RISA_BACAM	2, ., 5, ., 1, ., 9	0.3459	0.7991	0.8511	yes	N/A
P16440	RISA_BACSU	2, ., 5, ., 1, ., 9	0.3621	0.7991	0.8511	yes	N/A
P0AFU9	RISA_SHIFL	2, ., 5, ., 1, ., 9	0.4975	0.8951	0.9624	yes	N/A
Q9Z820	RISA_CHLPN	2, ., 5, ., 1, ., 9	0.4070	0.8471	0.97	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.9	0.914
3rd Layer	2.5.1	0.921

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	229
PRK13020	206	PRK13020, PRK13020, riboflavin synthase subunit al	1e-97
PRK09289	194	PRK09289, PRK09289, riboflavin synthase subunit al	3e-80
COG0307	204	COG0307, RibC, Riboflavin synthase alpha chain [Co	1e-78
TIGR00187	200	TIGR00187, ribE, riboflavin synthase, alpha subuni	2e-68
PLN02741	194	PLN02741, PLN02741, riboflavin synthase	6e-55
pfam00677	86	pfam00677, Lum_binding, Lumazine binding domain	7e-19
pfam00677	86	pfam00677, Lum_binding, Lumazine binding domain	6e-18

>gnl|CDD|183846 PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional

 Score =  282 bits (725), Expect = 1e-97
 Identities = 106/206 (51%), Positives = 142/206 (68%), Gaps = 1/206 (0%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQ   +V A+   +   ++ I FP +LL+G+ I  SVA+NGVCL+VTKIEG+ + 
Sbjct: 1   MFTGIVQATAEVVAIHKKDGLNTLEIAFPPELLEGLEIGASVAVNGVCLTVTKIEGDRVF 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FDV+ ETL++TNL  + V   VN+ERSAK   E+GGH LSGH+   A V  I   E+NY 
Sbjct: 61  FDVMEETLRLTNLADLRVGDRVNIERSAKFGAEIGGHILSGHVDTTATVVEISDTEENYD 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           +  ++  +  MKY+F KG++ ++G SLT+G+V E  F VHLIPET+  T +  K VGD +
Sbjct: 121 IRFRVPPE-WMKYIFAKGFIGVNGCSLTVGEVDESEFEVHLIPETLRATNLGAKKVGDLV 179

Query: 181 NIEVDSQTQVIVNTVERVLKENYGNL 206
           NIE+DSQTQVIV+TVERVL E    L
Sbjct: 180 NIEIDSQTQVIVDTVERVLAERLAEL 205

Length = 206

>gnl|CDD|236455 PRK09289, PRK09289, riboflavin synthase subunit alpha; Provisional

 Score =  238 bits (609), Expect = 3e-80
 Identities = 75/196 (38%), Positives = 117/196 (59%), Gaps = 2/196 (1%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIV+ +G V ++    D   +TI     L D + +  S+A+NGVCL+VT+I+G+  +
Sbjct: 1   MFTGIVEEVGTVESIEPKGDGLRLTIEAGKLLSD-LKLGDSIAVNGVCLTVTEIDGDSFT 59

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
            DV  ETL+ TNL  + V   VNLER+ ++   +GGH +SGH+     + +I+    +  
Sbjct: 60  VDVSPETLRRTNLGDLKVGDRVNLERALRLGDRLGGHIVSGHVDGTGEIVSIEKEGNSVE 119

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
              +     L KY+  KG +A+DG+SLT+ +V  D F V+LIP T+E TT+ +K VGD +
Sbjct: 120 FRFKAP-AELAKYIVEKGSIAVDGVSLTVNEVDGDRFSVNLIPHTLENTTLGEKKVGDRV 178

Query: 181 NIEVDSQTQVIVNTVE 196
           N+E+D   + +    E
Sbjct: 179 NLEIDLLAKYVERLTE 194

Length = 194

>gnl|CDD|223384 COG0307, RibC, Riboflavin synthase alpha chain [Coenzyme metabolism]

 Score =  234 bits (600), Expect = 1e-78
 Identities = 82/206 (39%), Positives = 122/206 (59%), Gaps = 7/206 (3%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIV+ IGKV  V    +  ++TI     +L+ + +  S+A+NGVCL+VT+   +  S
Sbjct: 1   MFTGIVEEIGKVKKV---ENGITLTIESAKLILEDVKLGDSIAVNGVCLTVTEFNEDGFS 57

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
            DV+ ETL+ TNL  + V   VNLER+ K+   +GGH +SGH+     +  I+      R
Sbjct: 58  VDVMPETLRRTNLGDLKVGDKVNLERALKLGDRLGGHLVSGHVDGTGEIVKIEKDGNAVR 117

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
              +   + L KY+  KG +A+DGISLT+ +V +D F V LIP T+E+TT+ +K VGD +
Sbjct: 118 FWFKAPPEELAKYIVEKGSIAVDGISLTVNEVEDDTFSVSLIPHTLERTTLGEKKVGDRV 177

Query: 181 NIEVDSQTQVIVNTVERVLKENYGNL 206
           NIE+D   +     VER+L     + 
Sbjct: 178 NIEIDVLAK----YVERLLAAGKASQ 199

Length = 204

>gnl|CDD|232864 TIGR00187, ribE, riboflavin synthase, alpha subunit

 Score =  208 bits (531), Expect = 2e-68
 Identities = 88/199 (44%), Positives = 128/199 (64%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGI+QG  K+ ++     F S+ +     +LD + +  S+A+NGVCL+VT+I  N+ S
Sbjct: 1   MFTGIIQGTAKLVSIKEKPLFISLVVNLADHMLDDLELGDSIAVNGVCLTVTEINKNHFS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
            D+  ETLK TNL  + V  +VN+ER+ K + E+GGHF+SGHI   A +  I+  E N +
Sbjct: 61  VDLSPETLKRTNLGDLKVGTWVNIERALKADGEIGGHFVSGHIDTTAEIAKIETSENNVQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
              ++ +  LMKY+  KG +A+DGISLTIGKV E  F V LIP T+E T +  K +GD +
Sbjct: 121 FWFKLQDSELMKYIVEKGSIAVDGISLTIGKVTETRFCVSLIPHTLENTILGLKKLGDRV 180

Query: 181 NIEVDSQTQVIVNTVERVL 199
           NIE+D   + + +T+ER L
Sbjct: 181 NIEIDMLGKAVADTLERTL 199

This protein family consists almost entirely of two lumazine-binding domains, described in the Lum_binding model from PFAM. The model generates lower scores against other proteins that also have two lumazine-binding domains, including some involved in bioluminescence.The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD]. Length = 200

>gnl|CDD|178342 PLN02741, PLN02741, riboflavin synthase

 Score =  174 bits (442), Expect = 6e-55
 Identities = 67/200 (33%), Positives = 116/200 (58%), Gaps = 9/200 (4%)

Query: 1   MFTGIVQGIGKVSAVFSYND-FKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYI 59
           +FTGIV+ +G+V ++   +D    + I   S +LDG+ +  S+A+NG CL+VT+ +G+  
Sbjct: 1   LFTGIVEEMGEVKSLGVTDDGGFDLKIE-ASTVLDGVKLGDSIAVNGTCLTVTEFDGDEF 59

Query: 60  SFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNY 119
           +  +  ETL+ T+L  +     VNLER+ +  + +GGHF+ GH+     +   +    + 
Sbjct: 60  TVGLAPETLRKTSLGELKTGSLVNLERALRPGSRMGGHFVQGHVDGTGTIVEQEPEGDSL 119

Query: 120 RMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVF--EDYFYVHLIPETMEKTTMSKKAVG 177
            ++++   + L+KY+  KG++A+DG SLT+  V   E  F   L+P T +K  +  K VG
Sbjct: 120 WVKVKADPE-LLKYIVPKGFIAVDGTSLTVVDVDDEEGCFNFMLVPYTQQKVVIPLKKVG 178

Query: 178 DALNIEVDSQTQVIVNTVER 197
           D +N+EVD    ++   VER
Sbjct: 179 DKVNLEVD----ILGKYVER 194

Length = 194

>gnl|CDD|201387 pfam00677, Lum_binding, Lumazine binding domain

 Score = 77.6 bits (192), Expect = 7e-19
 Identities = 28/86 (32%), Positives = 50/86 (58%)

Query: 100 SGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYV 159
           +G +   A + +I        + I++ +K L K +  K  +A++GISLT+ +V  + F  
Sbjct: 1   TGIVEGTAEIASITENGNARSIWIKIPDKMLTKVIIGKDSIAVNGISLTVTEVTGNIFTF 60

Query: 160 HLIPETMEKTTMSKKAVGDALNIEVD 185
            LIPET+++T +    VGD +N+E+D
Sbjct: 61  DLIPETLKRTNLGSLKVGDKVNLEID 86

This domain binds to derivatives of lumazine in some proteins. Some proteins have lost the residues involved in binding lumazine. Length = 86

>gnl|CDD|201387 pfam00677, Lum_binding, Lumazine binding domain

 Score = 75.3 bits (186), Expect = 6e-18
 Identities = 34/85 (40%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 3  TGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISC-SVAINGVCLSVTKIEGNYISF 61
          TGIV+G  +++++    + +S+ I  P  +L  + I   S+A+NG+ L+VT++ GN  +F
Sbjct: 1  TGIVEGTAEIASITENGNARSIWIKIPDKMLTKVIIGKDSIAVNGISLTVTEVTGNIFTF 60

Query: 62 DVINETLKITNLKAVAVDQFVNLER 86
          D+I ETLK TNL ++ V   VNLE 
Sbjct: 61 DLIPETLKRTNLGSLKVGDKVNLEI 85

This domain binds to derivatives of lumazine in some proteins. Some proteins have lost the residues involved in binding lumazine. Length = 86

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
TIGR00187	200	ribE riboflavin synthase, alpha subunit. The name	100.0
PRK13020	206	riboflavin synthase subunit alpha; Provisional	100.0
PLN02741	194	riboflavin synthase	100.0
COG0307	204	RibC Riboflavin synthase alpha chain [Coenzyme met	100.0
PRK09289	194	riboflavin synthase subunit alpha; Provisional	100.0
KOG3310|consensus	210		100.0
PF00677	85	Lum_binding: Lumazine binding domain; InterPro: IP	99.96
PF00677	85	Lum_binding: Lumazine binding domain; InterPro: IP	99.96
PRK09289	194	riboflavin synthase subunit alpha; Provisional	99.95
PRK13020	206	riboflavin synthase subunit alpha; Provisional	99.95
PLN02741	194	riboflavin synthase	99.94
TIGR00187	200	ribE riboflavin synthase, alpha subunit. The name	99.94
COG0307	204	RibC Riboflavin synthase alpha chain [Coenzyme met	99.93
KOG3310|consensus	210		99.61

>TIGR00187 ribE riboflavin synthase, alpha subunit

Probab=100.00  E-value=1e-80  Score=537.03  Aligned_cols=198  Identities=43%  Similarity=0.681  Sum_probs=191.9

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ   80 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd   80 (229)
                      |||||||++|+|.++++.+++++++|++|+.+++++++|||||||||||||+++.++.|+|++|||||++|||+.|++||
T Consensus         1 MFTGiVe~~G~V~~i~~~~~~~~l~i~~~~~~~~~l~~G~SIAvnGvCLTV~~i~~~~f~vdvipETl~~TtL~~l~~G~   80 (200)
T TIGR00187         1 MFTGIIQGTAKLVSIKEKPLFISLVVNLADHMLDDLELGDSIAVNGVCLTVTEINKNHFSVDLSPETLKRTNLGDLKVGT   80 (200)
T ss_pred             CCCEEeeEEEEEEEEEECCCcEEEEEEeChHHhcccccCCEEEECcEEEEEEEEcCCEEEEEEEHHHhhhcchhhCcCCC
Confidence            99999999999999999999999999999777899999999999999999999999999999999999999999999999


Q ss_pred             eeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEe-ccchhccceeeeccEEEceeeeeeeeEeCcEEEE
Q psy4641          81 FVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQM-TNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYV  159 (229)
Q Consensus        81 ~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~-p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~v  159 (229)
                      +||||||||+|||+|||+||||||++|+|.++++.++++.++|++ | +++++|+++|||||||||||||+++.+++|+|
T Consensus        81 ~VNLEral~~g~rlgGH~V~GHVd~~~~i~~~~~~~~~~~~~~~~~p-~~~~~yiv~KGsIaidGvSLTV~~v~~~~f~v  159 (200)
T TIGR00187        81 WVNIERALKADGEIGGHFVSGHIDTTAEIAKIETSENNVQFWFKLQD-SELMKYIVEKGSIAVDGISLTIGKVTETRFCV  159 (200)
T ss_pred             EEEEcccCCCCCccCCeeEeEEccEEEEEEEEEEcCCcEEEEEEECC-HHHHhccccCCEEEEeeeEEEEEeEcCCEEEE
Confidence            999999999999999999999999999999999999999999999 7 99999999999999999999999999999999


Q ss_pred             EeehhhHhhccCCCCCCCCEeEEcccCccchHHHHHHHHHhhcc
Q psy4641         160 HLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKENY  203 (229)
Q Consensus       160 ~lIP~Tl~~T~l~~~k~Gd~VNiE~D~~t~~i~kyv~~~l~~~~  203 (229)
                      +|||||+++|||+.+|+||+||||+|+    ++||++|++++.+
T Consensus       160 ~lIP~T~~~T~l~~~~~Gd~VNiE~D~----~~kyv~~~~~~~~  199 (200)
T TIGR00187       160 SLIPHTLENTILGLKKLGDRVNIEIDM----LGKAVADTLERTL  199 (200)
T ss_pred             EEehHhHhhCccccCCCCCEEEEeEhh----HHHHHHHHHHHhh
Confidence            999999999999999999999999997    8888888876543

The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.

>PRK13020 riboflavin synthase subunit alpha; Provisional

Probab=100.00  E-value=3.1e-80  Score=536.12  Aligned_cols=205  Identities=52%  Similarity=0.833  Sum_probs=201.0

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ   80 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd   80 (229)
                      |||||||++|+|.++++.+++++++|++|+.+++++++|||||||||||||+++.++.|+|++||||+++|||+.|++||
T Consensus         1 MFtGiI~~vg~I~~i~~~~~~~~l~i~~~~~~~~~l~~g~SIavnGVcLTV~~v~~~~f~~~lipeTl~~T~l~~~~~G~   80 (206)
T PRK13020          1 MFTGIVQATAEVVAIHKKDGLNTLEIAFPPELLEGLEIGASVAVNGVCLTVTKIEGDRVFFDVMEETLRLTNLADLRVGD   80 (206)
T ss_pred             CCCEEecEEEEEEEEEECCCcEEEEEEeChhHhccCCCCCEEEECCEEEEEEEECCCEEEEEEhHHHHhhCchhhccCCC
Confidence            99999999999999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             eeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEeccchhccceeeeccEEEceeeeeeeeEeCcEEEEE
Q psy4641          81 FVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVH  160 (229)
Q Consensus        81 ~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~v~  160 (229)
                      +|||||||++|||+||||||||||++|+|.++++.++++.++|++| +++.+|+++|||||||||||||+++.++.|+|+
T Consensus        81 ~VNlEral~~~~rlgGH~v~GhVd~~~~i~~i~~~~~~~~~~i~~~-~~~~~~i~~kgSIaidGvsLTV~~v~~~~f~v~  159 (206)
T PRK13020         81 RVNIERSAKFGAEIGGHILSGHVDTTATVVEISDTEENYDIRFRVP-PEWMKYIFAKGFIGVNGCSLTVGEVDESEFEVH  159 (206)
T ss_pred             EEeeEecccCCCccCCEeEEEEccEEEEEEEEEEcCCCEEEEEEEC-hHHhcccccCCEEEEeeEEEEEEeEcCCEEEEE
Confidence            9999999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             eehhhHhhccCCCCCCCCEeEEcccCccchHHHHHHHHHhhccccc
Q psy4641         161 LIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKENYGNL  206 (229)
Q Consensus       161 lIP~Tl~~T~l~~~k~Gd~VNiE~D~~t~~i~kyv~~~l~~~~~~~  206 (229)
                      |||||+++|||+.+|+||+||||+|+++|+++||++|+++.+++.+
T Consensus       160 lIp~Tl~~T~l~~~k~G~~VNiE~D~~~k~~~~~v~~~~~~~~~~~  205 (206)
T PRK13020        160 LIPETLRATNLGAKKVGDLVNIEIDSQTQVIVDTVERVLAERLAEL  205 (206)
T ss_pred             EeHHHHhhcccccCCCCCEEEEeEeccchHHHHHHHHHHhhhhccc
Confidence            9999999999999999999999999999999999999998887765

>PLN02741 riboflavin synthase

Probab=100.00  E-value=1.9e-79  Score=527.01  Aligned_cols=191  Identities=35%  Similarity=0.583  Sum_probs=186.3

Q ss_pred             CcceeeeceEEEEEEEE-cCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFS-YNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVD   79 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~-~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~G   79 (229)
                      |||||||++|+|.++++ .+++++++|+ |+.+++++++|||||||||||||++++++.|+|++|||||++|||+.|++|
T Consensus         1 MFTGiVe~~G~I~~i~~~~~~~~~l~i~-~~~~~~~l~~G~SIAvnGvCLTV~~~~~~~f~vdvipETl~~T~L~~l~~G   79 (194)
T PLN02741          1 LFTGIVEEMGEVKSLGVTDDGGFDLKIE-ASTVLDGVKLGDSIAVNGTCLTVTEFDGDEFTVGLAPETLRKTSLGELKTG   79 (194)
T ss_pred             CCCEEeCEEEEEEEEEecCCCcEEEEEE-cchhhcccccCCEEEECcEEEEEEEECCCEEEEEEEHHHhhhCccccCCCC
Confidence            99999999999999999 9999999999 666789999999999999999999999999999999999999999999999


Q ss_pred             CeeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEeccchhccceeeeccEEEceeeeeeeeEe--CcEE
Q psy4641          80 QFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVF--EDYF  157 (229)
Q Consensus        80 d~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~--~~~f  157 (229)
                      |+||||||||+|||+|||+||||||++|+|.++++.++++.++|++| +++++|+++|||||||||||||+++.  +++|
T Consensus        80 ~~VNLEral~~g~rlgGH~V~GHVd~~~~i~~~~~~~~~~~~~i~~p-~~~~~yi~~KGsIavdGvSLTV~~v~~~~~~f  158 (194)
T PLN02741         80 SLVNLERALRPGSRMGGHFVQGHVDGTGTIVEQEPEGDSLWVKVKAD-PELLKYIVPKGFIAVDGTSLTVVDVDDEEGCF  158 (194)
T ss_pred             CEEeeccCCcCCCccCCeeEeEECcEEEEEEEEEECCCcEEEEEEEC-HHHHcccccCcEEEEeeEEEEEEEeecCCCEE
Confidence            99999999999999999999999999999999999999999999999 99999999999999999999999999  8999


Q ss_pred             EEEeehhhHhhccCCCCCCCCEeEEcccCccchHHHHHHH
Q psy4641         158 YVHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVER  197 (229)
Q Consensus       158 ~v~lIP~Tl~~T~l~~~k~Gd~VNiE~D~~t~~i~kyv~~  197 (229)
                      +|+|||||+++|||+.+|+||+||||+|+    ||||++|
T Consensus       159 ~v~lIP~T~~~T~l~~~k~Gd~VNiE~D~----~~kyv~~  194 (194)
T PLN02741        159 NFMLVPYTQQKVVIPLKKVGDKVNLEVDI----LGKYVER  194 (194)
T ss_pred             EEEEcHHHHhhcccccCCCCCEEEEeEEc----hhhhhcC
Confidence            99999999999999999999999999996    8999975

>COG0307 RibC Riboflavin synthase alpha chain [Coenzyme metabolism]

Probab=100.00  E-value=5.3e-78  Score=517.81  Aligned_cols=199  Identities=41%  Similarity=0.623  Sum_probs=187.7

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ   80 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd   80 (229)
                      ||||||+++|+|....   +..++.+..++..+.+++.|||||||||||||++++++.|+||++||||++|||+.|++||
T Consensus         1 MFTGIIe~iG~V~~~~---~~~~~~i~~~~~~~~d~~lGdSIAvnGvCLTVt~~~~~~f~~dv~~ETl~~TnL~~~~~G~   77 (204)
T COG0307           1 MFTGIVEEIGKVKKVE---NGITLTIESAKLILEDVKLGDSIAVNGVCLTVTEFNEDGFSVDVMPETLRRTNLGDLKVGD   77 (204)
T ss_pred             CcceeeeeeEEEEecc---CceEEEEeecccccccCccCCeEEECCEEEEEEEECCCcEEEEecHHHhhhcchhhcccCC
Confidence            9999999999999443   6788888777777889999999999999999999999999999999999999999999999


Q ss_pred             eeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEeccchhccceeeeccEEEceeeeeeeeEeCcEEEEE
Q psy4641          81 FVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVH  160 (229)
Q Consensus        81 ~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~v~  160 (229)
                      +|||||||++|+|+||||||||||++|+|.+++++++++++||..|++++++|+++|||||||||||||+++.+++|+|+
T Consensus        78 ~VNLERAl~~~~r~GGH~VsGHVDg~g~I~~i~~~~na~~~~~~~~~~~l~kyiv~KGsIavDGiSLTV~~v~~~~F~V~  157 (204)
T COG0307          78 KVNLERALKLGDRLGGHLVSGHVDGTGEIVKIEKDGNAVRFWFKAPPEELAKYIVEKGSIAVDGISLTVNEVEDDTFSVS  157 (204)
T ss_pred             EEeeehhccCCCccccEEEEeEEeeEEEEEEEEEcCCeEEEEEEcCCHHHHhhhcccceEEEeeEEEEEEEEcCCEEEEE
Confidence            99999999999999999999999999999999999999999988544999999999999999999999999999999999


Q ss_pred             eehhhHhhccCCCCCCCCEeEEcccCccchHHHHHHHHHhhccccc
Q psy4641         161 LIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKENYGNL  206 (229)
Q Consensus       161 lIP~Tl~~T~l~~~k~Gd~VNiE~D~~t~~i~kyv~~~l~~~~~~~  206 (229)
                      |||||+++|+|+.+|+||+||||+|+    ++||+||+++......
T Consensus       158 lIPhT~~~T~l~~~~~Gd~VNiE~D~----l~kyver~l~~~~~~~  199 (204)
T COG0307         158 LIPHTLERTTLGEKKVGDRVNIEIDV----LAKYVERLLAAGKASQ  199 (204)
T ss_pred             EEecchhhcchhhccCCCEEEEeEcH----HHHHHHHHHhhccccc
Confidence            99999999999999999999999996    8999999998665543

>PRK09289 riboflavin synthase subunit alpha; Provisional

Probab=100.00  E-value=6.2e-75  Score=498.85  Aligned_cols=192  Identities=40%  Similarity=0.632  Sum_probs=186.8

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ   80 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd   80 (229)
                      |||||||++|+|.++++.+++++++++.|..+ ..+++|||||||||||||++++++.|+|++|||||++|||+.|++||
T Consensus         1 MFtGiV~~~g~V~~i~~~~~~~~~~i~~~~~~-~~l~~g~SIAvnGvcLTV~~~~~~~f~~~l~~eTl~~T~l~~l~~G~   79 (194)
T PRK09289          1 MFTGIVEEVGTVESIEPKGDGLRLTIEAGKLL-SDLKLGDSIAVNGVCLTVTEIDGDSFTVDVSPETLRRTNLGDLKVGD   79 (194)
T ss_pred             CCCEEeCeEEEEEEEEEcCCcEEEEEEcCccc-cccccCCEEEEccEEEEEEEEcCCEEEEEEEHHHhhhCchhhccCCC
Confidence            99999999999999999999999999998654 45999999999999999999999999999999999999999999999


Q ss_pred             eeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEeccchhccceeeeccEEEceeeeeeeeEeCcEEEEE
Q psy4641          81 FVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVH  160 (229)
Q Consensus        81 ~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~v~  160 (229)
                      +||||||+++|||+||||||||||++|+|.++++.+++++++|++| +.+++|+++|||||+|||||||+++.+++|+|+
T Consensus        80 ~VNLEra~~~~~~~gGHm~tGhVd~~g~I~~i~~~~~~~~~~i~~~-~~~~~~l~~kgSIavdGvsLTV~~~~~~~f~v~  158 (194)
T PRK09289         80 RVNLERALRLGDRLGGHIVSGHVDGTGEIVSIEKEGNSVEFRFKAP-AELAKYIVEKGSIAVDGVSLTVNEVDGDRFSVN  158 (194)
T ss_pred             EEEEeEcccCCCcccceeEEEEEEEEEEEEEEEECCCcEEEEEECC-hHHhcccccCCEEEEccEEEEEEEEcCCEEEEE
Confidence            9999999999999999999999999999999999999999999999 889999999999999999999999999999999


Q ss_pred             eehhhHhhccCCCCCCCCEeEEcccCccchHHHHHHHH
Q psy4641         161 LIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERV  198 (229)
Q Consensus       161 lIP~Tl~~T~l~~~k~Gd~VNiE~D~~t~~i~kyv~~~  198 (229)
                      |||||+++|||+.||+||+||||+|+    ++||++|+
T Consensus       159 lipeTl~~T~l~~~k~G~~VNlE~D~----~~kyv~~~  192 (194)
T PRK09289        159 LIPHTLENTTLGEKKVGDRVNLEIDL----LAKYVERL  192 (194)
T ss_pred             EeHHHHhhCccccCCCCCEEEEeEeh----HHHHHHhh
Confidence            99999999999999999999999996    89999986

>KOG3310|consensus

Probab=100.00  E-value=5.3e-61  Score=401.56  Aligned_cols=200  Identities=33%  Similarity=0.528  Sum_probs=189.2

Q ss_pred             CcceeeeceEEEEEEEEcC-CeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYN-DFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVD   79 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~-~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~G   79 (229)
                      ||||+|+++|+|++....+ +++.+.|.++ ..+.++..||||||||+||||++++...|+|-+.||||++|||++|+.|
T Consensus         1 mftgive~mG~Vkd~~~~dd~Gf~~kI~A~-~iL~Dch~GDSIAVNGtCLTVTeFn~~~FtVGiaPEtlr~tnl~~~k~G   79 (210)
T KOG3310|consen    1 MFTGIVECMGEVKDLGMADDGGFDLKIGAR-VILEDCHLGDSIAVNGTCLTVTEFNAEEFTVGIAPETLRKTNLEELKKG   79 (210)
T ss_pred             CccchHhhheehhhcCccccCCEEEEecCC-eeeeecccCCeEEEccEEEEEEeecccceEEecCHHHhhhccHHHHhcC
Confidence            9999999999999988754 5788888776 4579999999999999999999999999999999999999999999999


Q ss_pred             CeeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEeccchhccceeeeccEEEceeeeeeeeEe--CcEE
Q psy4641          80 QFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVF--EDYF  157 (229)
Q Consensus        80 d~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~--~~~f  157 (229)
                      ++||||||+....|+|||+||||||++|.|.+.+.+|++.++.|+..++.+.||+++||+||+||.||||.+|.  ++.|
T Consensus        80 ~pVNLERAv~~~~RmGGH~VQGHVDtva~Ivs~~~eG~si~f~f~~rD~~~lKYIV~KGfiavDGTSLTi~~Vd~~~s~F  159 (210)
T KOG3310|consen   80 SPVNLERAVQPVSRMGGHVVQGHVDTVAVIVSMEVEGDSIWFKFKLRDKGLLKYIVPKGFIAVDGTSLTIVDVDDEESCF  159 (210)
T ss_pred             CccchhhhccccccccceEEEeeecceEEEEEecccCCEEEEEEEecCccceEEEecccEEEEcCceEEEEEEcCCCCeE
Confidence            99999999999999999999999999999999999999999999987689999999999999999999999997  6689


Q ss_pred             EEEeehhhHhhccCCCCCCCCEeEEcccCccchHHHHHHHHHhhcccc
Q psy4641         158 YVHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKENYGN  205 (229)
Q Consensus       158 ~v~lIP~Tl~~T~l~~~k~Gd~VNiE~D~~t~~i~kyv~~~l~~~~~~  205 (229)
                      .++.|.||+++-.+..+|+||+||+|+|+    ++||+||++...++.
T Consensus       160 ~imMI~yTQ~nVimp~KkiGd~VN~EVD~----~GKy~Ekl~~~~l~~  203 (210)
T KOG3310|consen  160 NIMMIAYTQQNVIMPTKKIGDKVNLEVDI----MGKYVEKLLTSTLGG  203 (210)
T ss_pred             EEEEeeeccccEEEechhcCceeeEEEeh----HhHHHHHHHHHHhhc
Confidence            99999999999999999999999999996    899999998766654

>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2

Probab=99.96  E-value=4.5e-30  Score=194.26  Aligned_cols=85  Identities=40%  Similarity=0.664  Sum_probs=76.7

Q ss_pred             ceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCCee
Q psy4641           3 TGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQFV   82 (229)
Q Consensus         3 TGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd~V   82 (229)
                      ||||+++|+|.++++.+++++++|++|+..+.++..|||||+|||||||+++.++.|+|+++||||++|||+.|++||+|
T Consensus         1 tGiI~~~g~I~~i~~~~~~~~~~i~~~~~~~~~~~~g~SIavnGvcLTV~~~~~~~f~~~l~~eTl~~T~l~~~~~G~~V   80 (85)
T PF00677_consen    1 TGIIDGTGKIISIEKNGDSQRLRIEIPDKILSDLKIGGSIAVNGVCLTVTDINEDWFEVDLIPETLRRTTLGNLKVGDRV   80 (85)
T ss_dssp             -S--SEEEEEEEEEEESSEEEEEEEESTGGGGTG-TTSEEEETTEEEEEEEEETTEEEEEEEHHHHHCSSGGG--TTSEE
T ss_pred             CcCCCEEEEEEEEEECCCCEEEEEEcCHHHHhhCccCcEEEECCeeeEEEEecCCEEEEechHHHhhhchhccCCCCCEE
Confidence            79999999999999999999999999977778999999999999999999999999999999999999999999999999


Q ss_pred             eeccC
Q psy4641          83 NLERS   87 (229)
Q Consensus        83 NLEra   87 (229)
                      |||+|
T Consensus        81 NlE~d   85 (85)
T PF00677_consen   81 NLERD   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEeEC
Confidence            99986

5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.

>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2

Probab=99.96  E-value=1.9e-29  Score=190.84  Aligned_cols=85  Identities=32%  Similarity=0.568  Sum_probs=74.8

Q ss_pred             EEEEeEEEEEEEEEEcCCeEEEEEEeccchhccceeeeccEEEceeeeeeeeEeCcEEEEEeehhhHhhccCCCCCCCCE
Q psy4641         100 SGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDA  179 (229)
Q Consensus       100 ~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~v~lIP~Tl~~T~l~~~k~Gd~  179 (229)
                      |||||++|+|.++++.+++++++|++| +...+++..+||||+|||||||.++.+++|+|.|+|||+++|||+.||+||+
T Consensus         1 tGiI~~~g~I~~i~~~~~~~~~~i~~~-~~~~~~~~~g~SIavnGvcLTV~~~~~~~f~~~l~~eTl~~T~l~~~~~G~~   79 (85)
T PF00677_consen    1 TGIIDGTGKIISIEKNGDSQRLRIEIP-DKILSDLKIGGSIAVNGVCLTVTDINEDWFEVDLIPETLRRTTLGNLKVGDR   79 (85)
T ss_dssp             -S--SEEEEEEEEEEESSEEEEEEEES-TGGGGTG-TTSEEEETTEEEEEEEEETTEEEEEEEHHHHHCSSGGG--TTSE
T ss_pred             CcCCCEEEEEEEEEECCCCEEEEEEcC-HHHHhhCccCcEEEECCeeeEEEEecCCEEEEechHHHhhhchhccCCCCCE
Confidence            799999999999999999999999999 5555666666999999999999999999999999999999999999999999


Q ss_pred             eEEccc
Q psy4641         180 LNIEVD  185 (229)
Q Consensus       180 VNiE~D  185 (229)
                      ||||.|
T Consensus        80 VNlE~d   85 (85)
T PF00677_consen   80 VNLERD   85 (85)
T ss_dssp             EEEEEE
T ss_pred             EEEeEC
Confidence            999987

5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.

>PRK09289 riboflavin synthase subunit alpha; Provisional

Probab=99.95  E-value=1.3e-28  Score=211.93  Aligned_cols=88  Identities=28%  Similarity=0.415  Sum_probs=86.0

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ   80 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd   80 (229)
                      |||||||++|+|.++++.+++++++|++|+.+++|+++|||||||||||||+++.++.|+|++|||||++|||+.|++||
T Consensus        97 m~tGhVd~~g~I~~i~~~~~~~~~~i~~~~~~~~~l~~kgSIavdGvsLTV~~~~~~~f~v~lipeTl~~T~l~~~k~G~  176 (194)
T PRK09289         97 IVSGHVDGTGEIVSIEKEGNSVEFRFKAPAELAKYIVEKGSIAVDGVSLTVNEVDGDRFSVNLIPHTLENTTLGEKKVGD  176 (194)
T ss_pred             eEEEEEEEEEEEEEEEECCCcEEEEEECChHHhcccccCCEEEEccEEEEEEEEcCCEEEEEEeHHHHhhCccccCCCCC
Confidence            89999999999999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             eeeeccCC
Q psy4641          81 FVNLERSA   88 (229)
Q Consensus        81 ~VNLEral   88 (229)
                      +||||.++
T Consensus       177 ~VNlE~D~  184 (194)
T PRK09289        177 RVNLEIDL  184 (194)
T ss_pred             EEEEeEeh
Confidence            99999885

>PRK13020 riboflavin synthase subunit alpha; Provisional

Probab=99.95  E-value=8.6e-28  Score=208.58  Aligned_cols=88  Identities=24%  Similarity=0.370  Sum_probs=86.2

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ   80 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd   80 (229)
                      |||||||++|+|.++++.++.++++|++|+.+++|+.+|||||+|||||||+++.++.|+|++|||||++|||+.+++||
T Consensus        98 ~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~~~~i~~kgSIaidGvsLTV~~v~~~~f~v~lIp~Tl~~T~l~~~k~G~  177 (206)
T PRK13020         98 ILSGHVDTTATVVEISDTEENYDIRFRVPPEWMKYIFAKGFIGVNGCSLTVGEVDESEFEVHLIPETLRATNLGAKKVGD  177 (206)
T ss_pred             eEEEEccEEEEEEEEEEcCCCEEEEEEEChHHhcccccCCEEEEeeEEEEEEeEcCCEEEEEEeHHHHhhcccccCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeccCC
Q psy4641          81 FVNLERSA   88 (229)
Q Consensus        81 ~VNLEral   88 (229)
                      +||||.++
T Consensus       178 ~VNiE~D~  185 (206)
T PRK13020        178 LVNIEIDS  185 (206)
T ss_pred             EEEEeEec
Confidence            99999884

>PLN02741 riboflavin synthase

Probab=99.94  E-value=2.7e-27  Score=203.84  Aligned_cols=88  Identities=22%  Similarity=0.250  Sum_probs=85.7

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEe--CCEEEEEEeHhHHhhccCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIE--GNYISFDVINETLKITNLKAVAV   78 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~--~~~f~v~lipeTL~~TtL~~lk~   78 (229)
                      +++||||++|+|.++++.++++.++|++|+++++|+.+|||||+|||||||.+++  ++.|+|++||||++.|||+.+++
T Consensus        98 ~V~GHVd~~~~i~~~~~~~~~~~~~i~~p~~~~~yi~~KGsIavdGvSLTV~~v~~~~~~f~v~lIP~T~~~T~l~~~k~  177 (194)
T PLN02741         98 FVQGHVDGTGTIVEQEPEGDSLWVKVKADPELLKYIVPKGFIAVDGTSLTVVDVDDEEGCFNFMLVPYTQQKVVIPLKKV  177 (194)
T ss_pred             eEeEECcEEEEEEEEEECCCcEEEEEEECHHHHcccccCcEEEEeeEEEEEEEeecCCCEEEEEEcHHHHhhcccccCCC
Confidence            5899999999999999999999999999999999999999999999999999999  89999999999999999999999


Q ss_pred             CCeeeeccCC
Q psy4641          79 DQFVNLERSA   88 (229)
Q Consensus        79 Gd~VNLEral   88 (229)
                      ||+||||.++
T Consensus       178 Gd~VNiE~D~  187 (194)
T PLN02741        178 GDKVNLEVDI  187 (194)
T ss_pred             CCEEEEeEEc
Confidence            9999999885

>TIGR00187 ribE riboflavin synthase, alpha subunit

Probab=99.94  E-value=4.3e-27  Score=203.44  Aligned_cols=88  Identities=19%  Similarity=0.276  Sum_probs=85.7

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEc-CCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWF-PSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVD   79 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~-p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~G   79 (229)
                      +++||||++|+|.++++.++++.++|++ |+++++|+.+|||||+|||||||.++.++.|++.+||||++.|||+.+++|
T Consensus        98 ~V~GHVd~~~~i~~~~~~~~~~~~~~~~~p~~~~~yiv~KGsIaidGvSLTV~~v~~~~f~v~lIP~T~~~T~l~~~~~G  177 (200)
T TIGR00187        98 FVSGHIDTTAEIAKIETSENNVQFWFKLQDSELMKYIVEKGSIAVDGISLTIGKVTETRFCVSLIPHTLENTILGLKKLG  177 (200)
T ss_pred             eEeEEccEEEEEEEEEEcCCcEEEEEEECCHHHHhccccCCEEEEeeeEEEEEeEcCCEEEEEEehHhHhhCccccCCCC
Confidence            5899999999999999999999999999 888999999999999999999999999999999999999999999999999


Q ss_pred             CeeeeccCC
Q psy4641          80 QFVNLERSA   88 (229)
Q Consensus        80 d~VNLEral   88 (229)
                      |+||||.++
T Consensus       178 d~VNiE~D~  186 (200)
T TIGR00187       178 DRVNIEIDM  186 (200)
T ss_pred             CEEEEeEhh
Confidence            999999886

The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.

>COG0307 RibC Riboflavin synthase alpha chain [Coenzyme metabolism]

Probab=99.93  E-value=4.5e-26  Score=196.55  Aligned_cols=88  Identities=26%  Similarity=0.362  Sum_probs=84.1

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEE-cCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIW-FPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVD   79 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~-~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~G   79 (229)
                      .+|||||++|+|.++++.+++++++|. .|+++++|+.+||||||||+||||.++.+++|+|.+||||+++|+|+.+++|
T Consensus        95 ~VsGHVDg~g~I~~i~~~~na~~~~~~~~~~~l~kyiv~KGsIavDGiSLTV~~v~~~~F~V~lIPhT~~~T~l~~~~~G  174 (204)
T COG0307          95 LVSGHVDGTGEIVKIEKDGNAVRFWFKAPPEELAKYIVEKGSIAVDGISLTVNEVEDDTFSVSLIPHTLERTTLGEKKVG  174 (204)
T ss_pred             EEEeEEeeEEEEEEEEEcCCeEEEEEEcCCHHHHhhhcccceEEEeeEEEEEEEEcCCEEEEEEEecchhhcchhhccCC
Confidence            379999999999999999999999988 5578899999999999999999999999999999999999999999999999


Q ss_pred             CeeeeccCC
Q psy4641          80 QFVNLERSA   88 (229)
Q Consensus        80 d~VNLEral   88 (229)
                      |+||||.++
T Consensus       175 d~VNiE~D~  183 (204)
T COG0307         175 DRVNIEIDV  183 (204)
T ss_pred             CEEEEeEcH
Confidence            999999876

>KOG3310|consensus

Probab=99.61  E-value=8.3e-16  Score=129.65  Aligned_cols=87  Identities=17%  Similarity=0.193  Sum_probs=81.4

Q ss_pred             cceeeeceEEEEEEEEcCCeEEEEEEc-CCCCCCCCccCCcEEEcceeeeeeEEe--CCEEEEEEeHhHHhhccCCCCCC
Q psy4641           2 FTGIVQGIGKVSAVFSYNDFKSMTIWF-PSDLLDGISISCSVAINGVCLSVTKIE--GNYISFDVINETLKITNLKAVAV   78 (229)
Q Consensus         2 FTGhId~~G~I~~i~~~~~~~~l~i~~-p~~~~~~l~~g~SIAVnGvcLTV~~i~--~~~f~v~lipeTL~~TtL~~lk~   78 (229)
                      ++||||++|.|.+.+.++++..+.++. .+.+++|+++||.||+||.|||+++++  ++.|.+.+|.+|..+--....++
T Consensus        99 VQGHVDtva~Ivs~~~eG~si~f~f~~rD~~~lKYIV~KGfiavDGTSLTi~~Vd~~~s~F~imMI~yTQ~nVimp~Kki  178 (210)
T KOG3310|consen   99 VQGHVDTVAVIVSMEVEGDSIWFKFKLRDKGLLKYIVPKGFIAVDGTSLTIVDVDDEESCFNIMMIAYTQQNVIMPTKKI  178 (210)
T ss_pred             EEeeecceEEEEEecccCCEEEEEEEecCccceEEEecccEEEEcCceEEEEEEcCCCCeEEEEEeeeccccEEEechhc
Confidence            689999999999999999999999994 567889999999999999999999998  56899999999999999999999


Q ss_pred             CCeeeeccCC
Q psy4641          79 DQFVNLERSA   88 (229)
Q Consensus        79 Gd~VNLEral   88 (229)
                      ||+||||.++
T Consensus       179 Gd~VN~EVD~  188 (210)
T KOG3310|consen  179 GDKVNLEVDI  188 (210)
T ss_pred             CceeeEEEeh
Confidence            9999999665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	229
1i8d_A	213	Crystal Structure Of Riboflavin Synthase Length = 2		7e-57
1kzl_A	208	Riboflavin Synthase From S.Pombe Bound To Carboxyet		9e-28
1hze_A	97	Solution Structure Of The N-Terminal Domain Of Ribo		5e-23
3a35_A	190	Crystal Structure Of Lump Complexed With Riboflavin		6e-16
3ddy_A	186	Structure Of Lumazine Protein, An Optical Transpond		1e-11

>pdb|1I8D|A Chain A, Crystal Structure Of Riboflavin Synthase Length = 213

Iteration: 1
 Score =  216 bits (551), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 103/207 (49%), Positives = 146/207 (70%), Gaps = 2/207 (0%)
Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQG  K+ ++    +F++  +  P  +LDG+    SVA NG CL+VT+I GN++S
Sbjct: 1   MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVS 60
Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD++ ETL+ITNL  + V  +VN+ER+AK + E+GGH +SGHI+  A V  I   E N +
Sbjct: 61  FDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQ 120
Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           +  ++ +  LMKY+ YKG++ IDGISLT+G+V    F VHLIPET+E+TT+ KK +G  +
Sbjct: 121 IWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARV 180
Query: 181 NIEVDSQTQVIVNTVERVL--KENYGN 205
           NIE+D QTQ +V+TVERVL  +EN  N
Sbjct: 181 NIEIDPQTQAVVDTVERVLAARENAMN 207

>pdb|1KZL|A Chain A, Riboflavin Synthase From S.Pombe Bound To Carboxyethyllumazine Length = 208

Iteration: 1
 Score =  120 bits (300), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 106/187 (56%), Gaps = 4/187 (2%)
Query: 1   MFTGIVQGIGKVSAVFSY--NDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNY 58
           MFTG+V+ IG V  V     N F +M I  P  +LD      S+A+NG CL+VT  +  +
Sbjct: 1   MFTGLVEAIGVVKDVQGTIDNGF-AMKIEAPQ-ILDDCHTGDSIAVNGTCLTVTDFDRYH 58
Query: 59  ISFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKN 118
            +  +  E+L++TNL        VNLER+   +T +GGHF+ GH+  VA +   +   + 
Sbjct: 59  FTVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEA 118
Query: 119 YRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGD 178
                +  +  ++KY+ YKGY+A+DG SLTI  V +  F + +I  T  K  M+KK VGD
Sbjct: 119 IDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMAKKNVGD 178
Query: 179 ALNIEVD 185
            +N+EVD
Sbjct: 179 LVNVEVD 185

>pdb|1HZE|A Chain A, Solution Structure Of The N-Terminal Domain Of Riboflavin Synthase From E. Coli Length = 97

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 69/97 (71%)
Query: 1  MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
          MFTGIVQG  K+ ++    +F++  +  P  +LDG+    SVA NG CL+VT+I GN++S
Sbjct: 1  MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVS 60
Query: 61 FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGH 97
          FD++ ETL+ITNL  + V  +VN+ER+AK + E+GGH
Sbjct: 61 FDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGH 97

>pdb|3A35|A Chain A, Crystal Structure Of Lump Complexed With Riboflavin Length = 190

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 99/184 (53%), Gaps = 4/184 (2%)
Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MF GIVQG G +  +   +D +   I FP D+L+ +     + +NG  L+V +I G+ + 
Sbjct: 1   MFKGIVQGAGIIKKISKNDDTQRHGITFPKDILESVEKGTVMLVNGCSLTVVRISGDVVY 60
Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD I++ +  T  + + V   VNLE   +  + +G   L+G+I  VA V  I   E   +
Sbjct: 61  FD-IDQAINTTTFRELEVGNKVNLEVRPEFGSLLGKGALTGNIKGVATVDNITEEEDRLK 119
Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTT-MSKKAVGDA 179
           + I++  K L++ +  + ++ I+G+S +I ++ +D  +++  P+ +  TT +     G  
Sbjct: 120 VYIKIP-KDLIENILSEDHIGINGVSHSIEEISDDIIFINY-PKNLSITTNLGTLEKGSD 177
Query: 180 LNIE 183
           +N+E
Sbjct: 178 VNVE 181

>pdb|3DDY|A Chain A, Structure Of Lumazine Protein, An Optical Transponder Of Luminescent Bacteria Length = 186

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 2/184 (1%)
Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MF GIVQG G + ++    D +   I FP  +   + +   + +NG   +V +I G+ + 
Sbjct: 1   MFRGIVQGRGVIRSISKSEDSQRHGIAFPEGMFQLVDVDTVMLVNGCSNTVVRILGDMVY 60
Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD I++ L  T    +     VNLE   K    VG   L+G+I   A V AI+  +  + 
Sbjct: 61  FD-IDQALGTTTFDGLKEGDQVNLEIHPKFGEVVGRGGLTGNIKGTALVAAIEENDAGFS 119
Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           + I +  K L + +  K  + IDGISL I  + +    ++   + +  T ++  A    +
Sbjct: 120 VLIDIP-KGLAENLTVKDDIGIDGISLPITDMSDSIITLNYSRDLLASTNIASLAKDVKV 178
Query: 181 NIEV 184
           N+E+
Sbjct: 179 NVEI 182

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
1i8d_A	213	Riboflavin synthase; riboflavin biosynthesis, anti	2e-93
3a35_A	190	Lumazine protein, LUMP; luminous bacteria, homolog	2e-82
3ddy_A	186	Lumazine protein, LUMP; luminescent bacteria, luma	3e-80
1kzl_A	208	Riboflavin synthase; biosynthesis of riboflavin, l	1e-72
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A* Length = 213

 Score =  271 bits (696), Expect = 2e-93
 Identities = 100/201 (49%), Positives = 142/201 (70%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MFTGIVQG  K+ ++    +F++  +  P  +LDG+    SVA NG CL+VT+I GN++S
Sbjct: 1   MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVS 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD++ ETL+ITNL  + V  +VN+ER+AK + E+GGH +SGHI+  A V  I   E N +
Sbjct: 61  FDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQ 120

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           +  ++ +  LMKY+ YKG++ IDGISLT+G+V    F VHLIPET+E+TT+ KK +G  +
Sbjct: 121 IWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARV 180

Query: 181 NIEVDSQTQVIVNTVERVLKE 201
           NIE+D QTQ +V+TVERVL  
Sbjct: 181 NIEIDPQTQAVVDTVERVLAA 201

>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A* Length = 190

 Score =  243 bits (622), Expect = 2e-82
 Identities = 49/185 (26%), Positives = 95/185 (51%), Gaps = 2/185 (1%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MF GIVQG G +  +   +D +   I FP D+L+ +     + +NG  L+V +I G+ + 
Sbjct: 1   MFKGIVQGAGIIKKISKNDDTQRHGITFPKDILESVEKGTVMLVNGCSLTVVRISGDVVY 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD+ ++ +  T  + + V   VNLE   +  + +G   L+G+I  VA V  I   E   +
Sbjct: 61  FDI-DQAINTTTFRELEVGNKVNLEVRPEFGSLLGKGALTGNIKGVATVDNITEEEDRLK 119

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           + I++  K L++ +  + ++ I+G+S +I ++ +D  +++        T +     G  +
Sbjct: 120 VYIKI-PKDLIENILSEDHIGINGVSHSIEEISDDIIFINYPKNLSITTNLGTLEKGSDV 178

Query: 181 NIEVD 185
           N+E  
Sbjct: 179 NVETL 183

>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi} Length = 186

 Score =  237 bits (607), Expect = 3e-80
 Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 2/187 (1%)

Query: 1   MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
           MF GIVQG G + ++    D +   I FP  +   + +   + +NG   +V +I G+ + 
Sbjct: 1   MFRGIVQGRGVIRSISKSEDSQRHGIAFPEGMFQLVDVDTVMLVNGCSNTVVRILGDMVY 60

Query: 61  FDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYR 120
           FD+ ++ L  T    +     VNLE   K    VG   L+G+I   A V AI+  +  + 
Sbjct: 61  FDI-DQALGTTTFDGLKEGDQVNLEIHPKFGEVVGRGGLTGNIKGTALVAAIEENDAGFS 119

Query: 121 MEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDAL 180
           + I +  K L + +  K  + IDGISL I  + +    ++   + +  T ++  A    +
Sbjct: 120 VLIDI-PKGLAENLTVKDDIGIDGISLPITDMSDSIITLNYSRDLLASTNIASLAKDVKV 178

Query: 181 NIEVDSQ 187
           N+E+ ++
Sbjct: 179 NVEILNE 185

>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3 Length = 208

 Score =  218 bits (559), Expect = 1e-72
 Identities = 70/203 (34%), Positives = 111/203 (54%), Gaps = 2/203 (0%)

Query: 1   MFTGIVQGIGKVSAV-FSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYI 59
           MFTG+V+ IG V  V  + ++  +M I     +LD      S+A+NG CL+VT  +  + 
Sbjct: 1   MFTGLVEAIGVVKDVQGTIDNGFAMKI-EAPQILDDCHTGDSIAVNGTCLTVTDFDRYHF 59

Query: 60  SFDVINETLKITNLKAVAVDQFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNY 119
           +  +  E+L++TNL        VNLER+   +T +GGHF+ GH+  VA +   +   +  
Sbjct: 60  TVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEAI 119

Query: 120 RMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVGDA 179
               +  +  ++KY+ YKGY+A+DG SLTI  V +  F + +I  T  K  M+KK VGD 
Sbjct: 120 DFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMAKKNVGDL 179

Query: 180 LNIEVDSQTQVIVNTVERVLKEN 202
           +N+EVD   +     VE  + + 
Sbjct: 180 VNVEVDQIGKYTEKLVEAHIADW 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 37/159 (23%)

Query: 20  DFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKIT-------- 71
           D  +    +     D ++     ++N   L   +    +    V   +  I         
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLN--VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 72  -NLKAVAVDQFVN-------LERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEI 123
            ++    V   VN       +E+  K +T      +    ++         L+     E 
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKEST----ISIPSIYLE---------LKVKLENEY 443

Query: 124 QMTNKSLMKYVFYKGYVAIDGISLTIGKVFED-YFYVHL 161
            +    +  Y   K + + D     +   + D YFY H+
Sbjct: 444 ALHRSIVDHYNIPKTFDSDD-----LIPPYLDQYFYSHI 477

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
1i8d_A	213	Riboflavin synthase; riboflavin biosynthesis, anti	100.0
1kzl_A	208	Riboflavin synthase; biosynthesis of riboflavin, l	100.0
3a35_A	190	Lumazine protein, LUMP; luminous bacteria, homolog	100.0
3ddy_A	186	Lumazine protein, LUMP; luminescent bacteria, luma	100.0
3ddy_A	186	Lumazine protein, LUMP; luminescent bacteria, luma	99.95
3a35_A	190	Lumazine protein, LUMP; luminous bacteria, homolog	99.95
1i8d_A	213	Riboflavin synthase; riboflavin biosynthesis, anti	99.94
1kzl_A	208	Riboflavin synthase; biosynthesis of riboflavin, l	99.94

>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A*

Probab=100.00  E-value=4.5e-81  Score=542.19  Aligned_cols=195  Identities=47%  Similarity=0.805  Sum_probs=187.7

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ   80 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd   80 (229)
                      |||||||++|+|.++++.+++++++|++|+.+++++++|||||||||||||+++.++.|+|++|||||++|||+.|++||
T Consensus         1 MFTGiV~~vG~V~~i~~~~~~~~l~i~~~~~~~~~l~~g~SIAvnGvcLTV~~v~~~~F~vdvipETl~~T~Lg~l~~Gd   80 (213)
T 1i8d_A            1 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGD   80 (213)
T ss_dssp             CBCSCCCEEEEEEEEEECSSEEEEEEECCGGGTTTCCTTCEEEETTEEEEEEEEETTEEEEEEEHHHHHHSGGGGCCTTC
T ss_pred             CCCEEeceEEEEEEEEECCCcEEEEEEEChHHhccCCCCcEEEECCEEeeEEEEcCCEEEEEEeHHHHhhcccccCCCCC
Confidence            99999999999999999999999999999777899999999999999999999999999999999999999999999999


Q ss_pred             eeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEeccch-hccceeeeccEEEceeeeeeeeEeCcEEEE
Q psy4641          81 FVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKS-LMKYVFYKGYVAIDGISLTIGKVFEDYFYV  159 (229)
Q Consensus        81 ~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~-~~~~iv~KGsIavdGvSLTV~~v~~~~f~v  159 (229)
                      +|||||||++|||+|||+||||||++|+|.++++.+++++++|++| ++ +++|+++|||||||||||||+++.+++|+|
T Consensus        81 ~VNLEral~~g~rlgGH~VsGHVDg~g~i~~~~~~~~~~~~~~~~p-~~~l~~yiv~KGsIavdGvSLTV~~v~~~~F~v  159 (213)
T 1i8d_A           81 WVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQ-DSQLMKYILYKGFIGIDGISLTVGEVTPTRFCV  159 (213)
T ss_dssp             EEEEEECCBTTSCCSSCCBCCCCCEEEEEEEEEEETTEEEEEEEES-CGGGGGGCCTTCEEEETTEEEECCSBCSSEEEE
T ss_pred             EEEeCcCCCCCCcccCeeEEEEeeEEEEEEEEEEcCCeEEEEEEeC-HHHhHhhceeCCeEEEccEEEEEEEecCCEEEE
Confidence            9999999999999999999999999999999999999999999999 88 999999999999999999999999999999


Q ss_pred             EeehhhHhhccCCCCCCCCEeEEcccCccchHHHHHHHHHh
Q psy4641         160 HLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLK  200 (229)
Q Consensus       160 ~lIP~Tl~~T~l~~~k~Gd~VNiE~D~~t~~i~kyv~~~l~  200 (229)
                      +|||||+++|||+.+|+||+||||+|+    ++||++|+++
T Consensus       160 ~lIP~T~~~T~l~~~~~Gd~VNlE~D~----~~kyv~~~~~  196 (213)
T 1i8d_A          160 HLIPETLERTTLGKKKLGARVNIEIDP----QTQAVVDTVE  196 (213)
T ss_dssp             EECHHHHHHSSGGGCCTTCEEEEEECH----HHHHHHHHHH
T ss_pred             EEchHHHhhCccccCCCCCEEEEeEch----HHHHHHHHHH
Confidence            999999999999999999999999997    5555555544

>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3

Probab=100.00  E-value=9.2e-81  Score=538.58  Aligned_cols=200  Identities=36%  Similarity=0.549  Sum_probs=191.7

Q ss_pred             CcceeeeceEEEEEEEEcCC-eEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYND-FKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVD   79 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~-~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~G   79 (229)
                      |||||||++|+|.++++.++ +++++|+ |+.+++++++|||||||||||||+++.++.|+|++|||||++|||+.|++|
T Consensus         1 MFTGiVe~vG~V~~i~~~~~~~~~l~i~-~~~~~~~l~~g~SIAvnGvcLTV~~~~~~~F~vdvipETl~~T~Lg~l~~G   79 (208)
T 1kzl_A            1 MFTGLVEAIGVVKDVQGTIDNGFAMKIE-APQILDDCHTGDSIAVNGTCLTVTDFDRYHFTVGIAPESLRLTNLGQCKAG   79 (208)
T ss_dssp             CBCSCCCEEEEEEEEEEETTTEEEEEEE-CGGGCTTCCTTCEEEETTEEEEEEEECSSEEEEEECHHHHHHSSGGGCCTT
T ss_pred             CCCEEeceEEEEEEEEECCCceEEEEEe-chHHhcccCCCCEEEECCEEeeEEEEcCCEEEEEEeHHHHhhccccccCCC
Confidence            99999999999999999998 9999999 666789999999999999999999999999999999999999999999999


Q ss_pred             CeeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEe-ccchhccceeeeccEEEceeeeeeeeEeCcEEE
Q psy4641          80 QFVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQM-TNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFY  158 (229)
Q Consensus        80 d~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~-p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~  158 (229)
                      |+|||||||++|||+|||+||||||++|+|.++++.+++++++|++ | +++++|+++|||||||||||||+++.+++|+
T Consensus        80 d~VNLEral~~g~rlgGH~VsGHVDg~g~i~~~~~~~~~~~~~~~~~p-~~l~~yiv~KGsIaidGiSLTV~~v~~~~F~  158 (208)
T 1kzl_A           80 DPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRD-PFVLKYIVYKGYIALDGTSLTITHVDDSTFS  158 (208)
T ss_dssp             CEEEEEECCCCSCCSSSCCBCSCCCEEEEEEEEEEETTEEEEEEEESS-GGGGGGCCTTCEEEETTEEEEEEEECSSCEE
T ss_pred             CEEEeccCCCCCCcccceEeccEEeeeeEEEEEEecCCcEEEEEEeCC-HHHHhhhhhCCEEEEeeEEeEEEeEcCCEEE
Confidence            9999999999999999999999999999999999999999999999 9 9999999999999999999999999999999


Q ss_pred             EEeehhhHhhccCCCCCCCCEeEEcccCccchHHHHHHHHHhhccccc
Q psy4641         159 VHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKENYGNL  206 (229)
Q Consensus       159 v~lIP~Tl~~T~l~~~k~Gd~VNiE~D~~t~~i~kyv~~~l~~~~~~~  206 (229)
                      |+|||||+++|||+.+|+||+||||+|+    ++||++|++...+++.
T Consensus       159 v~lIP~T~~~T~l~~~~~Gd~VNlE~D~----~~kyv~~~~~~~~~~~  202 (208)
T 1kzl_A          159 IMMISYTQSKVIMAKKNVGDLVNVEVDQ----IGKYTEKLVEAHIADW  202 (208)
T ss_dssp             EEECHHHHTTSGGGGCCTTCEEEEEECT----HHHHHHHHHHHHTTTC
T ss_pred             EEEehhhHhhcccccCCCCCEEEEeEeh----HHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999997    7888888876555443

>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A*

Probab=100.00  E-value=3.4e-78  Score=516.50  Aligned_cols=188  Identities=27%  Similarity=0.479  Sum_probs=179.6

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ   80 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd   80 (229)
                      |||||||++|+|.++++.++++.+++++|+.+++++++|||||||||||||+++.++.|+|+ |||||++|||+.|++||
T Consensus         1 MFTGiV~~~G~V~~i~~~~~~~~~~i~i~~~~~~~l~~g~SIAvnGvcLTV~~v~~~~F~v~-ipeTl~~T~Lg~l~~Gd   79 (190)
T 3a35_A            1 MFKGIVQGAGIIKKISKNDDTQRHGITFPKDILESVEKGTVMLVNGCSLTVVRISGDVVYFD-IDQAINTTTFRELEVGN   79 (190)
T ss_dssp             CBCSCCCEEEEEEEEEECSSCEEEEEECCHHHHHTCCTTCEEEETTEEEEEEEEETTEEEEE-ESTTTTTSSGGGCCTTC
T ss_pred             CCCEEeCeEEEEEEEEECCCcEEEEEEECchhhccCCCCCEEEECCEEeeEEEEcCCEEEEe-cHHHHhhcccccCCCCC
Confidence            99999999999999999999888888888777799999999999999999999999999999 99999999999999999


Q ss_pred             eeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEeccchhccceeeeccEEEceeeeeeeeEeCcEEEEE
Q psy4641          81 FVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVH  160 (229)
Q Consensus        81 ~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~v~  160 (229)
                      +|||||||++|||+|||+||||||++|+|.++++.+++++++|++| +++++|+++|||||||||||||+++.+++|+|+
T Consensus        80 ~VNLEral~~g~rlgGH~v~GHVdg~g~i~~~~~~~~~~~~~~~~p-~~~~~yi~~KGsIavdGvSLTV~~v~~~~f~v~  158 (190)
T 3a35_A           80 KVNLEVRPEFGSLLGKGALTGNIKGVATVDNITEEEDRLKVYIKIP-KDLIENILSEDHIGINGVSHSIEEISDDIIFIN  158 (190)
T ss_dssp             EEEEECCCSSCCCCCSSCBCSCCCEEEEEEEEEEETTEEEEEEECC-TTSCSCCCTTSEEEETTEEEECCEEETTEEEEE
T ss_pred             EEEeCcCCcCCCccCCeeEEEEEeEEEEEEEEEEcCCeEEEEEEeC-HHHHhcCCcCCEEEECCEEEEEEEecCCEEEEE
Confidence            9999999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             eehhhHhhccCCCCCCCCEeEEc-ccCccchHHHH
Q psy4641         161 LIPETMEKTTMSKKAVGDALNIE-VDSQTQVIVNT  194 (229)
Q Consensus       161 lIP~Tl~~T~l~~~k~Gd~VNiE-~D~~t~~i~ky  194 (229)
                      |||||+++|||+.+|+||+|||| +|+    ++||
T Consensus       159 lIP~T~~~T~l~~~~~Gd~VNlE~~D~----~~ky  189 (190)
T 3a35_A          159 YPKNLSITTNLGTLEKGSDVNVETLNV----SNEW  189 (190)
T ss_dssp             EETTHHHHSGGGGCCTTCEEEEEECC---------
T ss_pred             EeHHHHhhcccccCcCCCEEEEecccc----cccc
Confidence            99999999999999999999999 997    6776

>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}

Probab=100.00  E-value=2.2e-75  Score=497.66  Aligned_cols=182  Identities=27%  Similarity=0.429  Sum_probs=171.0

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ   80 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd   80 (229)
                      ||||||+++|+|.++++.+++.+++|++|+.+++++++|||||||||||||++++++.|+|++ ||||++|||+.|++||
T Consensus         1 MFTGiVe~vG~V~~i~~~~~~~~l~i~~~~~~~~~~~~GdSIAvnGvCLTV~~~~~~~f~vdv-~ETl~~T~Lg~l~~G~   79 (186)
T 3ddy_A            1 MFRGIVQGRGVIRSISKSEDSQRHGIAFPEGMFQLVDVDTVMLVNGCSNTVVRILGDMVYFDI-DQALGTTTFDGLKEGD   79 (186)
T ss_dssp             CBCSCCCEEEEEEEEEECSSCEEEEEECCTTTGGGCCTTCEEEETTEEEEEEEEETTEEEEEE-CTTTTTSSGGGCCTTC
T ss_pred             CCCeeeCeEEEEEEEEECCCcEEEEEEeChHHhccCCCCCeEEEeeEEEEEEEEcCCEEEEEh-HHhhhhCchhhcCCCC
Confidence            999999999999999999999999999998888999999999999999999999999999999 9999999999999999


Q ss_pred             eeeeccCCCCCceecceeeEEEEeEEEEEEEEEEcCCeEEEEEEeccchhccceeeeccEEEceeeeeeeeEeCcEEEEE
Q psy4641          81 FVNLERSAKMNTEVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVH  160 (229)
Q Consensus        81 ~VNLEral~~gdrlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~v~  160 (229)
                      +|||||||++|||+|||+||||||++|+|.++++.+++++++|++| +++++|+++|||||||||||||+++.+++|+|+
T Consensus        80 ~VNLEral~~~~rlgGH~vsGHVdg~g~i~~i~~~~~~~~~~i~~p-~~l~~~i~~KgSIavdGvSLTV~~v~~~~f~v~  158 (186)
T 3ddy_A           80 QVNLEIHPKFGEVVGRGGLTGNIKGTALVAAIEENDAGFSVLIDIP-KGLAENLTVKDDIGIDGISLPITDMSDSIITLN  158 (186)
T ss_dssp             EEEEECCC---------CBCSCCCEEEEEEEEECCSSEEEEEEECC-TTTCSCCCTTCEEEETTEEEECCEEETTEEEEE
T ss_pred             EEEECCCCCCCCccCCeeEEEEEeEEEEEEEEEECCCeEEEEEEcC-HHHhhccccCcEEEEEeEEEEEEeecCCEEEEE
Confidence            9999999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             eehhhHhhccCCCCCCCCEeEEcc
Q psy4641         161 LIPETMEKTTMSKKAVGDALNIEV  184 (229)
Q Consensus       161 lIP~Tl~~T~l~~~k~Gd~VNiE~  184 (229)
                      |||||+++|||+.+++||+||||+
T Consensus       159 lIp~Tl~~T~l~~~~~Gd~VNlE~  182 (186)
T 3ddy_A          159 YSRDLLASTNIASLAKDVKVNVEI  182 (186)
T ss_dssp             EEGGGGGTSSGGGCCTTCEEEEEE
T ss_pred             EcHHHHhhcccccCccCCEEEEEE
Confidence            999999999999999999999997

>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}

Probab=99.95  E-value=2.9e-28  Score=207.43  Aligned_cols=86  Identities=26%  Similarity=0.384  Sum_probs=84.8

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ   80 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd   80 (229)
                      |||||||++|+|.++++.+++++++|++|+.+++|+.+|||||+|||||||++++++.|+|++||||+++|||+.+++||
T Consensus        97 ~vsGHVdg~g~i~~i~~~~~~~~~~i~~p~~l~~~i~~KgSIavdGvSLTV~~v~~~~f~v~lIp~Tl~~T~l~~~~~Gd  176 (186)
T 3ddy_A           97 GLTGNIKGTALVAAIEENDAGFSVLIDIPKGLAENLTVKDDIGIDGISLPITDMSDSIITLNYSRDLLASTNIASLAKDV  176 (186)
T ss_dssp             CBCSCCCEEEEEEEEECCSSEEEEEEECCTTTCSCCCTTCEEEETTEEEECCEEETTEEEEEEEGGGGGTSSGGGCCTTC
T ss_pred             eEEEEEeEEEEEEEEEECCCeEEEEEEcCHHHhhccccCcEEEEEeEEEEEEeecCCEEEEEEcHHHHhhcccccCccCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecc
Q psy4641          81 FVNLER   86 (229)
Q Consensus        81 ~VNLEr   86 (229)
                      +||||.
T Consensus       177 ~VNlE~  182 (186)
T 3ddy_A          177 KVNVEI  182 (186)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999997

>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A*

Probab=99.95  E-value=5.1e-28  Score=206.52  Aligned_cols=88  Identities=26%  Similarity=0.344  Sum_probs=85.5

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ   80 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd   80 (229)
                      |+|||||++|+|.++++.+++++++|++|+.+++|+.+||||||||+||||+++.++.|+|.+||||+++|||+.+++||
T Consensus        97 ~v~GHVdg~g~i~~~~~~~~~~~~~~~~p~~~~~yi~~KGsIavdGvSLTV~~v~~~~f~v~lIP~T~~~T~l~~~~~Gd  176 (190)
T 3a35_A           97 ALTGNIKGVATVDNITEEEDRLKVYIKIPKDLIENILSEDHIGINGVSHSIEEISDDIIFINYPKNLSITTNLGTLEKGS  176 (190)
T ss_dssp             CBCSCCCEEEEEEEEEEETTEEEEEEECCTTSCSCCCTTSEEEETTEEEECCEEETTEEEEEEETTHHHHSGGGGCCTTC
T ss_pred             eEEEEEeEEEEEEEEEEcCCeEEEEEEeCHHHHhcCCcCCEEEECCEEEEEEEecCCEEEEEEeHHHHhhcccccCcCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeec-cCC
Q psy4641          81 FVNLE-RSA   88 (229)
Q Consensus        81 ~VNLE-ral   88 (229)
                      +|||| .++
T Consensus       177 ~VNlE~~D~  185 (190)
T 3a35_A          177 DVNVETLNV  185 (190)
T ss_dssp             EEEEEECC-
T ss_pred             EEEEecccc
Confidence            99999 876

>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A*

Probab=99.94  E-value=1.3e-27  Score=207.12  Aligned_cols=88  Identities=19%  Similarity=0.302  Sum_probs=85.9

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCCC-CCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSD-LLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVD   79 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~-~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~G   79 (229)
                      |+|||||++|+|.++++.+++++++|++|+. +++|+.+||||||||+||||+++.++.|+|.+||||+++|||+.+++|
T Consensus        98 ~VsGHVDg~g~i~~~~~~~~~~~~~~~~p~~~l~~yiv~KGsIavdGvSLTV~~v~~~~F~v~lIP~T~~~T~l~~~~~G  177 (213)
T 1i8d_A           98 LMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLG  177 (213)
T ss_dssp             CBCCCCCEEEEEEEEEEETTEEEEEEEESCGGGGGGCCTTCEEEETTEEEECCSBCSSEEEEEECHHHHHHSSGGGCCTT
T ss_pred             eEEEEeeEEEEEEEEEEcCCeEEEEEEeCHHHhHhhceeCCeEEEccEEEEEEEecCCEEEEEEchHHHhhCccccCCCC
Confidence            6899999999999999999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             CeeeeccCC
Q psy4641          80 QFVNLERSA   88 (229)
Q Consensus        80 d~VNLEral   88 (229)
                      |+||||.++
T Consensus       178 d~VNlE~D~  186 (213)
T 1i8d_A          178 ARVNIEIDP  186 (213)
T ss_dssp             CEEEEEECH
T ss_pred             CEEEEeEch
Confidence            999999875

>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3

Probab=99.94  E-value=7.2e-27  Score=201.82  Aligned_cols=88  Identities=18%  Similarity=0.213  Sum_probs=85.8

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEc-CCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWF-PSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVD   79 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~-p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~G   79 (229)
                      +++||||++|+|.++++.+++++++|++ |+.+++|+.+|||||+||+||||+++.++.|+|.+||||+++|||+.+++|
T Consensus        98 ~VsGHVDg~g~i~~~~~~~~~~~~~~~~~p~~l~~yiv~KGsIaidGiSLTV~~v~~~~F~v~lIP~T~~~T~l~~~~~G  177 (208)
T 1kzl_A           98 FVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMAKKNVG  177 (208)
T ss_dssp             CBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEECSSCEEEEECHHHHTTSGGGGCCTT
T ss_pred             EeccEEeeeeEEEEEEecCCcEEEEEEeCCHHHHhhhhhCCEEEEeeEEeEEEeEcCCEEEEEEehhhHhhcccccCCCC
Confidence            5899999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeeccCC
Q psy4641          80 QFVNLERSA   88 (229)
Q Consensus        80 d~VNLEral   88 (229)
                      |+||||.++
T Consensus       178 d~VNlE~D~  186 (208)
T 1kzl_A          178 DLVNVEVDQ  186 (208)
T ss_dssp             CEEEEEECT
T ss_pred             CEEEEeEeh
Confidence            999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d1i8da2	113	b.43.4.3 (A:94-206) Riboflavin synthase {Escherich	4e-28
d1i8da2	113	b.43.4.3 (A:94-206) Riboflavin synthase {Escherich	3e-12
d1i8da1	93	b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia	2e-25
d1i8da1	93	b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia	8e-16
d1kzla2	110	b.43.4.3 (A:93-202) Riboflavin synthase {Fission y	3e-24
d1kzla2	110	b.43.4.3 (A:93-202) Riboflavin synthase {Fission y	1e-11
d1kzla1	92	b.43.4.3 (A:1-92) Riboflavin synthase {Fission yea	6e-19
d1kzla1	92	b.43.4.3 (A:1-92) Riboflavin synthase {Fission yea	2e-13

>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]} Length = 113

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (251), Expect = 4e-28
 Identities = 56/108 (51%), Positives = 77/108 (71%)

Query: 94  VGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVF 153
           +GGH +SGHI+  A V  I   E N ++  ++ +  LMKY+ YKG++ IDGISLT+G+V 
Sbjct: 1   IGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVT 60

Query: 154 EDYFYVHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKE 201
              F VHLIPET+E+TT+ KK +G  +NIE+D QTQ +V+TVERVL  
Sbjct: 61  PTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAA 108

>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]} Length = 113

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Escherichia coli [TaxId: 562]

 Score = 59.2 bits (143), Expect = 3e-12
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 1  MFTGIVQGIGKVSAVFSYNDFKSMTIWFPS-DLLDGISISCSVAINGVCLSVTKIEGNYI 59
          + +G +    +V+ + +  + + +        L+  I     + I+G+ L+V ++     
Sbjct: 5  LMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRF 64

Query: 60 SFDVINETLKITNLKAVAVDQFVNLE 85
             +I ETL+ T L    +   VN+E
Sbjct: 65 CVHLIPETLERTTLGKKKLGARVNIE 90

>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]} Length = 93

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Escherichia coli [TaxId: 562]

 Score = 93.5 bits (232), Expect = 2e-25
 Identities = 44/93 (47%), Positives = 65/93 (69%)

Query: 1  MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
          MFTGIVQG  K+ ++    +F++  +  P  +LDG+    SVA NG CL+VT+I GN++S
Sbjct: 1  MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVS 60

Query: 61 FDVINETLKITNLKAVAVDQFVNLERSAKMNTE 93
          FD++ ETL+ITNL  + V  +VN+ER+AK + E
Sbjct: 61 FDLMKETLRITNLGDLKVGDWVNVERAAKFSDE 93

>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]} Length = 93

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Escherichia coli [TaxId: 562]

 Score = 68.0 bits (166), Expect = 8e-16
 Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 100 SGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYV 159
           +G +   A + +I          +++ +  ++  +     VA +G  LT+ ++  ++   
Sbjct: 3   TGIVQGTAKLVSIDEKPNFRTHVVELPDH-MLDGLETGASVAHNGCCLTVTEINGNHVSF 61

Query: 160 HLIPETMEKTTMSKKAVGDALNIE 183
            L+ ET+  T +    VGD +N+E
Sbjct: 62  DLMKETLRITNLGDLKVGDWVNVE 85

>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 110

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 90.8 bits (225), Expect = 3e-24
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%)

Query: 95  GGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFE 154
           GGHF+ GH+  VA +   +   +      +  +  ++KY+ YKGY+A+DG SLTI  V +
Sbjct: 3   GGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDD 62

Query: 155 DYFYVHLIPETMEKTTMSKKAVGDALNIEVDSQTQVIVNTVERVLKENYGN 205
             F + +I  T  K  M+KK VGD +N+EVD     I    E++++ +  +
Sbjct: 63  STFSIMMISYTQSKVIMAKKNVGDLVNVEVD----QIGKYTEKLVEAHIAD 109

>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 110

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 57.6 bits (139), Expect = 1e-11
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 3  TGIVQGIGKVSAVFSYNDFKSMTIWFP-SDLLDGISISCSVAINGVCLSVTKIEGNYISF 61
           G V  + ++       +    T       +L  I     +A++G  L++T ++ +  S 
Sbjct: 8  QGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSI 67

Query: 62 DVINETLKITNLKAVAVDQFVNLE 85
           +I+ T     +    V   VN+E
Sbjct: 68 MMISYTQSKVIMAKKNVGDLVNVE 91

>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 92

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 76.2 bits (187), Expect = 6e-19
 Identities = 31/92 (33%), Positives = 46/92 (50%)

Query: 1  MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYIS 60
          MFTG+V+ IG V  V    D           +LD      S+A+NG CL+VT  +  + +
Sbjct: 1  MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDRYHFT 60

Query: 61 FDVINETLKITNLKAVAVDQFVNLERSAKMNT 92
            +  E+L++TNL        VNLER+   +T
Sbjct: 61 VGIAPESLRLTNLGQCKAGDPVNLERAVLSST 92

>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 92

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 61.9 bits (150), Expect = 2e-13
 Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 100 SGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYV 159
           +G +  +  V+ +Q    N    +++    ++        +A++G  LT+      +F V
Sbjct: 3   TGLVEAIGVVKDVQGTIDN-GFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDRYHFTV 61

Query: 160 HLIPETMEKTTMSKKAVGDALNIEVD 185
            + PE++  T + +   GD +N+E  
Sbjct: 62  GIAPESLRLTNLGQCKAGDPVNLERA 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1i8da2	113	Riboflavin synthase {Escherichia coli [TaxId: 562]	100.0
d1kzla2	110	Riboflavin synthase {Fission yeast (Schizosaccharo	100.0
d1i8da1	93	Riboflavin synthase {Escherichia coli [TaxId: 562]	100.0
d1kzla1	92	Riboflavin synthase {Fission yeast (Schizosaccharo	100.0
d1kzla2	110	Riboflavin synthase {Fission yeast (Schizosaccharo	99.96
d1i8da1	93	Riboflavin synthase {Escherichia coli [TaxId: 562]	99.96
d1i8da2	113	Riboflavin synthase {Escherichia coli [TaxId: 562]	99.96
d1kzla1	92	Riboflavin synthase {Fission yeast (Schizosaccharo	99.96
d1ep3b1	101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	92.26
d1ep3b1	101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	89.55
d1fdra1	99	Ferredoxin reductase (flavodoxin reductase) N-term	81.48
d1a8pa1	99	Ferredoxin reductase (flavodoxin reductase) N-term	80.96

>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-42  Score=273.25  Aligned_cols=110  Identities=51%  Similarity=0.853  Sum_probs=106.0

Q ss_pred             ecceeeEEEEeEEEEEEEEEEcCCeEEEEEEeccchhccceeeeccEEEceeeeeeeeEeCcEEEEEeehhhHhhccCCC
Q psy4641          94 VGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSK  173 (229)
Q Consensus        94 lgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~v~lIP~Tl~~T~l~~  173 (229)
                      +||||||||||++|+|.++++.+++..+++.+|++.+.+|+.+|||||+|||||||+++.+++|+|++|||||++|||+.
T Consensus         1 igGH~vsGhV~~~G~I~~i~~~~~~~~~~i~~~~~~~~~~i~~g~SIavnGvcLTV~~~~~~~f~v~li~ETl~~T~l~~   80 (113)
T d1i8da2           1 IGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGK   80 (113)
T ss_dssp             CSSCCBCCCCCEEEEEEEEEEETTEEEEEEEESCGGGGGGCCTTCEEEETTEEEECCSBCSSEEEEEECHHHHHHSSGGG
T ss_pred             CCceeeeeEeCEEEEEEEEEEcCCceEEEEEeehHHHhhhhhhhheEeccCceEEEeeecCCEEEEEeEHHHhhhCcccc
Confidence            69999999999999999999999999999999856799999999999999999999999999999999999999999999


Q ss_pred             CCCCCEeEEcccCccchHHHHHHHHHhhcc
Q psy4641         174 KAVGDALNIEVDSQTQVIVNTVERVLKENY  203 (229)
Q Consensus       174 ~k~Gd~VNiE~D~~t~~i~kyv~~~l~~~~  203 (229)
                      |++||+||||+|+++|+++||++|+|+.+.
T Consensus        81 ~~~G~~VNlE~D~~~k~i~~~~~~~~~~~~  110 (113)
T d1i8da2          81 KKLGARVNIEIDPQTQAVVDTVERVLAARE  110 (113)
T ss_dssp             CCTTCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEeEechhHHHHHHHHHHHhhhh
Confidence            999999999999999999999999998653

>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=2.2e-42  Score=270.51  Aligned_cols=108  Identities=35%  Similarity=0.596  Sum_probs=103.0

Q ss_pred             eecceeeEEEEeEEEEEEEEEEcCCeEEEEEEeccchhccceeeeccEEEceeeeeeeeEeCcEEEEEeehhhHhhccCC
Q psy4641          93 EVGGHFLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMS  172 (229)
Q Consensus        93 rlgGH~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~v~lIP~Tl~~T~l~  172 (229)
                      |+||||||||||++|+|.++++.++++.+++.+|++.+.+|+++|||||+|||||||+++.+++|+|++|||||++|||+
T Consensus         1 r~~GH~v~GHVd~~g~I~~i~~~~~~~~~~i~~~~~~~~~~l~~~~SIavnGvcLTV~~~~~~~f~v~lipETl~~Tnl~   80 (110)
T d1kzla2           1 RMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMA   80 (110)
T ss_dssp             CSSSCCBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEECSSCEEEEECHHHHTTSGGG
T ss_pred             CcceeeeeEEecEEEEEEEEEECCCcceeeeecchhhhhhhhhhhheEEcCCcEEEEEeecCCEEEEEEhHHHHhhcccc
Confidence            79999999999999999999999999999999985678999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEeEEcccCccchHHHHHHHHHhhccc
Q psy4641         173 KKAVGDALNIEVDSQTQVIVNTVERVLKENYG  204 (229)
Q Consensus       173 ~~k~Gd~VNiE~D~~t~~i~kyv~~~l~~~~~  204 (229)
                      .|++||+||||+|+    +|||++|+++.+++
T Consensus        81 ~~~~G~~VNLE~D~----lak~i~~~~~~~~~  108 (110)
T d1kzla2          81 KKNVGDLVNVEVDQ----IGKYTEKLVEAHIA  108 (110)
T ss_dssp             GCCTTCEEEEEECT----HHHHHHHHHHHHTT
T ss_pred             cCCCCCEEEEeehh----HHHHHHHHHHhhcc
Confidence            99999999999997    89999999887664

>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.2e-37  Score=233.14  Aligned_cols=93  Identities=47%  Similarity=0.793  Sum_probs=91.7

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVDQ   80 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~Gd   80 (229)
                      |||||||++|+|.++++.++.+++++++|+.+++++.+|||||||||||||+++.++.|+|+++|||+++|||+.|++|+
T Consensus         1 MFtGiV~~~g~I~~i~~~~~~~~~~i~~~~~~~~~~~~g~SIavnGvcLTV~~~~~~~f~~~ii~eTl~~T~l~~~~~G~   80 (93)
T d1i8da1           1 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGD   80 (93)
T ss_dssp             CBCSCCCEEEEEEEEEECSSEEEEEEECCGGGTTTCCTTCEEEETTEEEEEEEEETTEEEEEEEHHHHHHSGGGGCCTTC
T ss_pred             CcCeeeceEEEEEEEEECCCcEEEEEEECHHHhhhcccCCeEEECCEEEEEEecCCccEEEEEeHHHhhhCchhhccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeccCCCCCce
Q psy4641          81 FVNLERSAKMNTE   93 (229)
Q Consensus        81 ~VNLEral~~gdr   93 (229)
                      +||||||||+||+
T Consensus        81 ~VNlErslk~gde   93 (93)
T d1i8da1          81 WVNVERAAKFSDE   93 (93)
T ss_dssp             EEEEEECCBTTSC
T ss_pred             EEEECcCCcCCCC
Confidence            9999999999996

>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=8.4e-34  Score=214.63  Aligned_cols=90  Identities=36%  Similarity=0.504  Sum_probs=84.2

Q ss_pred             CcceeeeceEEEEEEEEcC-CeEEEEEEcCCCCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYN-DFKSMTIWFPSDLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVD   79 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~-~~~~l~i~~p~~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~G   79 (229)
                      |||||||++|+|.++++.+ +.+++.+..| .+++++.+|||||||||||||+++.++.|+|++|||||++|||+.|++|
T Consensus         1 MFTGiV~~~g~I~~i~~~~~~~~~~~i~~~-~~~~~i~~g~SIavnGvcLTV~~~~~~~f~~~lipeTl~~T~l~~~~~G   79 (92)
T d1kzla1           1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAP-QILDDCHTGDSIAVNGTCLTVTDFDRYHFTVGIAPESLRLTNLGQCKAG   79 (92)
T ss_dssp             CBCSCCCEEEEEEEEEEETTTEEEEEEECG-GGCTTCCTTCEEEETTEEEEEEEECSSEEEEEECHHHHHHSSGGGCCTT
T ss_pred             CCCcccCeEEEEEEEEECCCCeEEEEEECc-HHhhhcccCceEEeccEEEEeEeeccceEEEEEEhHhccccchhhCcCC
Confidence            9999999999999998865 4788888865 4678999999999999999999999999999999999999999999999


Q ss_pred             CeeeeccCCCCC
Q psy4641          80 QFVNLERSAKMN   91 (229)
Q Consensus        80 d~VNLEral~~g   91 (229)
                      |+|||||||++.
T Consensus        80 ~~VNlE~sl~a~   91 (92)
T d1kzla1          80 DPVNLERAVLSS   91 (92)
T ss_dssp             CEEEEEECCCCS
T ss_pred             CEEEeCccccCC
Confidence            999999999986

>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.96  E-value=1.5e-30  Score=202.85  Aligned_cols=88  Identities=18%  Similarity=0.212  Sum_probs=84.0

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCC-CCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPS-DLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVD   79 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~-~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~G   79 (229)
                      |++||||++|+|.++++.++.+++++.+|. .+.+++..|||||||||||||+++.++.|+|++|||||++|||+.|++|
T Consensus         6 ~v~GHVd~~g~I~~i~~~~~~~~~~i~~~~~~~~~~l~~~~SIavnGvcLTV~~~~~~~f~v~lipETl~~Tnl~~~~~G   85 (110)
T d1kzla2           6 FVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMAKKNVG   85 (110)
T ss_dssp             CBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEECSSCEEEEECHHHHTTSGGGGCCTT
T ss_pred             eeeEEecEEEEEEEEEECCCcceeeeecchhhhhhhhhhhheEEcCCcEEEEEeecCCEEEEEEhHHHHhhcccccCCCC
Confidence            689999999999999999999999999874 4568999999999999999999999999999999999999999999999


Q ss_pred             CeeeeccCC
Q psy4641          80 QFVNLERSA   88 (229)
Q Consensus        80 d~VNLEral   88 (229)
                      |+||||+++
T Consensus        86 ~~VNLE~D~   94 (110)
T d1kzla2          86 DLVNVEVDQ   94 (110)
T ss_dssp             CEEEEEECT
T ss_pred             CEEEEeehh
Confidence            999999986

>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.8e-30  Score=196.85  Aligned_cols=88  Identities=19%  Similarity=0.274  Sum_probs=85.7

Q ss_pred             eeEEEEeEEEEEEEEEEcCCeEEEEEEeccchhccceeeeccEEEceeeeeeeeEeCcEEEEEeehhhHhhccCCCCCCC
Q psy4641          98 FLSGHIIDVANVRAIQALEKNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAVG  177 (229)
Q Consensus        98 ~V~GHVd~~~~i~~i~~~~~~~~~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~v~lIP~Tl~~T~l~~~k~G  177 (229)
                      |++||||++|+|.++++.+++++++|++| +.+.+|+.+|||||+|||||||.++.++.|+|++||||+++|||+.|++|
T Consensus         1 MFtGiV~~~g~I~~i~~~~~~~~~~i~~~-~~~~~~~~~g~SIavnGvcLTV~~~~~~~f~~~ii~eTl~~T~l~~~~~G   79 (93)
T d1i8da1           1 MFTGIVQGTAKLVSIDEKPNFRTHVVELP-DHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVG   79 (93)
T ss_dssp             CBCSCCCEEEEEEEEEECSSEEEEEEECC-GGGTTTCCTTCEEEETTEEEEEEEEETTEEEEEEEHHHHHHSGGGGCCTT
T ss_pred             CcCeeeceEEEEEEEEECCCcEEEEEEEC-HHHhhhcccCCeEEECCEEEEEEecCCccEEEEEeHHHhhhCchhhccCC
Confidence            68999999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             CEeEEcccC
Q psy4641         178 DALNIEVDS  186 (229)
Q Consensus       178 d~VNiE~D~  186 (229)
                      |+||||.-+
T Consensus        80 ~~VNlErsl   88 (93)
T d1i8da1          80 DWVNVERAA   88 (93)
T ss_dssp             CEEEEEECC
T ss_pred             CEEEECcCC
Confidence            999999764

>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.8e-30  Score=202.01  Aligned_cols=88  Identities=19%  Similarity=0.303  Sum_probs=84.1

Q ss_pred             CcceeeeceEEEEEEEEcCCeEEEEEEcCC-CCCCCCccCCcEEEcceeeeeeEEeCCEEEEEEeHhHHhhccCCCCCCC
Q psy4641           1 MFTGIVQGIGKVSAVFSYNDFKSMTIWFPS-DLLDGISISCSVAINGVCLSVTKIEGNYISFDVINETLKITNLKAVAVD   79 (229)
Q Consensus         1 MFTGhId~~G~I~~i~~~~~~~~l~i~~p~-~~~~~l~~g~SIAVnGvcLTV~~i~~~~f~v~lipeTL~~TtL~~lk~G   79 (229)
                      |+|||||++|+|.++++.++..++++.+|. .+.+++++|||||||||||||+++.+++|+|++|||||++|||+.|++|
T Consensus         5 ~vsGhV~~~G~I~~i~~~~~~~~~~i~~~~~~~~~~i~~g~SIavnGvcLTV~~~~~~~f~v~li~ETl~~T~l~~~~~G   84 (113)
T d1i8da2           5 LMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLG   84 (113)
T ss_dssp             CBCCCCCEEEEEEEEEEETTEEEEEEEESCGGGGGGCCTTCEEEETTEEEECCSBCSSEEEEEECHHHHHHSSGGGCCTT
T ss_pred             eeeeEeCEEEEEEEEEEcCCceEEEEEeehHHHhhhhhhhheEeccCceEEEeeecCCEEEEEeEHHHhhhCccccCcCC
Confidence            799999999999999999999999999984 5778999999999999999999999999999999999999999999999


Q ss_pred             CeeeeccCC
Q psy4641          80 QFVNLERSA   88 (229)
Q Consensus        80 d~VNLEral   88 (229)
                      |+||||.++
T Consensus        85 ~~VNlE~D~   93 (113)
T d1i8da2          85 ARVNIEIDP   93 (113)
T ss_dssp             CEEEEEECH
T ss_pred             CEEEEeEec
Confidence            999999875

>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Riboflavin synthase
domain: Riboflavin synthase
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.96  E-value=6.1e-30  Score=193.24  Aligned_cols=89  Identities=20%  Similarity=0.377  Sum_probs=81.6

Q ss_pred             eeEEEEeEEEEEEEEEEcC-CeEEEEEEeccchhccceeeeccEEEceeeeeeeeEeCcEEEEEeehhhHhhccCCCCCC
Q psy4641          98 FLSGHIIDVANVRAIQALE-KNYRMEIQMTNKSLMKYVFYKGYVAIDGISLTIGKVFEDYFYVHLIPETMEKTTMSKKAV  176 (229)
Q Consensus        98 ~V~GHVd~~~~i~~i~~~~-~~~~~~i~~p~~~~~~~iv~KGsIavdGvSLTV~~v~~~~f~v~lIP~Tl~~T~l~~~k~  176 (229)
                      |++||||++|+|.++++.+ +.+++++..| + +.+++..|||||+|||||||.++.+++|++.||||||++|||+.||+
T Consensus         1 MFTGiV~~~g~I~~i~~~~~~~~~~~i~~~-~-~~~~i~~g~SIavnGvcLTV~~~~~~~f~~~lipeTl~~T~l~~~~~   78 (92)
T d1kzla1           1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAP-Q-ILDDCHTGDSIAVNGTCLTVTDFDRYHFTVGIAPESLRLTNLGQCKA   78 (92)
T ss_dssp             CBCSCCCEEEEEEEEEEETTTEEEEEEECG-G-GCTTCCTTCEEEETTEEEEEEEECSSEEEEEECHHHHHHSSGGGCCT
T ss_pred             CCCcccCeEEEEEEEEECCCCeEEEEEECc-H-HhhhcccCceEEeccEEEEeEeeccceEEEEEEhHhccccchhhCcC
Confidence            6899999999999998865 4677888866 4 77899999999999999999999999999999999999999999999


Q ss_pred             CCEeEEcccCcc
Q psy4641         177 GDALNIEVDSQT  188 (229)
Q Consensus       177 Gd~VNiE~D~~t  188 (229)
                      ||+||||.|+.+
T Consensus        79 G~~VNlE~sl~a   90 (92)
T d1kzla1          79 GDPVNLERAVLS   90 (92)
T ss_dssp             TCEEEEEECCCC
T ss_pred             CCEEEeCccccC
Confidence            999999999853

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=92.26  E-value=0.16  Score=35.41  Aligned_cols=81  Identities=10%  Similarity=-0.055  Sum_probs=56.5

Q ss_pred             eceEEEEEEEEc-CCeEEEEEEcCCCCCCCCccCCcEEE----cc----eeeeeeEEeC--CEEEEE--EeHhHHhhccC
Q psy4641           7 QGIGKVSAVFSY-NDFKSMTIWFPSDLLDGISISCSVAI----NG----VCLSVTKIEG--NYISFD--VINETLKITNL   73 (229)
Q Consensus         7 d~~G~I~~i~~~-~~~~~l~i~~p~~~~~~l~~g~SIAV----nG----vcLTV~~i~~--~~f~v~--lipeTL~~TtL   73 (229)
                      +...+|.+.++. ++.++++++.|.. .....+|..+.+    +|    -++++.+...  +.+.+.  ..+.-.-..-|
T Consensus         4 ~~~~~V~~~~~~~~~i~~l~l~~~~~-~~~~~pGQfv~l~~~~~~~~~~R~~Si~~~~~~~~~i~~~i~~~~~g~~t~~l   82 (101)
T d1ep3b1           4 QEMMTVVSQREVAYNIFEMVLKGTLV-DEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKL   82 (101)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEESGGG-GGCCSTTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEECCCTTSHHHHH
T ss_pred             CeeEEEEEEEEecCCEEEEEEECCCh-hhccCCCceEEEEccCCccEeeccceeeeCCCCCcEEEEEEeecCcchhhHHH
Confidence            456788887765 5678899987643 345789999988    44    3888988864  345544  33543334456


Q ss_pred             CCCCCCCeeeeccCC
Q psy4641          74 KAVAVDQFVNLERSA   88 (229)
Q Consensus        74 ~~lk~Gd~VNLEral   88 (229)
                      ..+++||+|++.-|+
T Consensus        83 ~~l~~Gd~v~v~GP~   97 (101)
T d1ep3b1          83 SKLESGAKVDVMGPL   97 (101)
T ss_dssp             HTCCTTCEEEEEEEE
T ss_pred             HhCCCCCEEEEeccc
Confidence            789999999987543

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=89.55  E-value=0.62  Score=32.16  Aligned_cols=77  Identities=12%  Similarity=0.133  Sum_probs=50.8

Q ss_pred             EEEEEEEEEEc-CCeEEEEEEeccchhccceeeeccEEE----ce----eeeeeeeEeC--cEEEEE--eehhhHhhccC
Q psy4641         105 DVANVRAIQAL-EKNYRMEIQMTNKSLMKYVFYKGYVAI----DG----ISLTIGKVFE--DYFYVH--LIPETMEKTTM  171 (229)
Q Consensus       105 ~~~~i~~i~~~-~~~~~~~i~~p~~~~~~~iv~KGsIav----dG----vSLTV~~v~~--~~f~v~--lIP~Tl~~T~l  171 (229)
                      ..++|++.++. .+-+.++++.| . .....-+..+|.|    +|    -+++|++..+  ..+++.  ..|.-....-|
T Consensus         5 ~~~~V~~~~~~~~~i~~l~l~~~-~-~~~~~~pGQfv~l~~~~~~~~~~R~~Si~~~~~~~~~i~~~i~~~~~g~~t~~l   82 (101)
T d1ep3b1           5 EMMTVVSQREVAYNIFEMVLKGT-L-VDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKL   82 (101)
T ss_dssp             EEEEEEEEEEEETTEEEEEEESG-G-GGGCCSTTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEECCCTTSHHHHH
T ss_pred             eeEEEEEEEEecCCEEEEEEECC-C-hhhccCCCceEEEEccCCccEeeccceeeeCCCCCcEEEEEEeecCcchhhHHH
Confidence            45788887765 55677899877 3 2223456666766    33    4889998854  355554  44554444456


Q ss_pred             CCCCCCCEeEEc
Q psy4641         172 SKKAVGDALNIE  183 (229)
Q Consensus       172 ~~~k~Gd~VNiE  183 (229)
                      ..+++||+|+|.
T Consensus        83 ~~l~~Gd~v~v~   94 (101)
T d1ep3b1          83 SKLESGAKVDVM   94 (101)
T ss_dssp             HTCCTTCEEEEE
T ss_pred             HhCCCCCEEEEe
Confidence            889999999885

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.48  E-value=1.7  Score=30.09  Aligned_cols=76  Identities=18%  Similarity=0.229  Sum_probs=48.1

Q ss_pred             eEEEEEEEEc-CCeEEEEEEcCCCCCCCCccCCcEEEc----ce----eeeeeEEe-CCEEEEEE--eHhHHhhccCCCC
Q psy4641           9 IGKVSAVFSY-NDFKSMTIWFPSDLLDGISISCSVAIN----GV----CLSVTKIE-GNYISFDV--INETLKITNLKAV   76 (229)
Q Consensus         9 ~G~I~~i~~~-~~~~~l~i~~p~~~~~~l~~g~SIAVn----Gv----cLTV~~i~-~~~f~v~l--ipeTL~~TtL~~l   76 (229)
                      .|+|.++++. ++.+.++++.|. +  ...+|..|.+.    |-    +.|+.+-. ++.+.+.+  .|.=.-.+-|.++
T Consensus         5 ~a~V~~v~~~t~~v~~l~~~~p~-~--~f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~~~~~~~~vk~~~~G~~S~~l~~l   81 (99)
T d1fdra1           5 TGKVTKVQNWTDALFSLTVHAPV-L--PFTAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRLAAL   81 (99)
T ss_dssp             EEEEEEEEECSSSEEEEEEECCC-C--CCCTTCEEEEEECC---CEEEEEECCSCTTCSSEEEEEECCTTCSSHHHHHTC
T ss_pred             EEEEEEEEEcCCCEEEEEEcCCC-C--CCCCCcEEEeccCCCCCcEEEEEccCCCCCCceeEEEEEEecCcHHHHHHhhC
Confidence            4788888875 456778888762 2  47889998773    32    56665542 33444443  4442233456789


Q ss_pred             CCCCeeeeccC
Q psy4641          77 AVDQFVNLERS   87 (229)
Q Consensus        77 k~Gd~VNLEra   87 (229)
                      ++||.|.+..+
T Consensus        82 k~GD~v~v~gP   92 (99)
T d1fdra1          82 KPGDEVQVVSE   92 (99)
T ss_dssp             CTTCEEEEESS
T ss_pred             CCCCEEEECcC
Confidence            99999998864

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

Probab=80.96  E-value=3  Score=28.79  Aligned_cols=77  Identities=14%  Similarity=0.130  Sum_probs=49.1

Q ss_pred             eEEEEEEEE-cCCeEEEEEEcCCCCCCCCccCCcEEEc----ce----eeeeeEEe-CCEEEEEEe--HhHHhhccCCCC
Q psy4641           9 IGKVSAVFS-YNDFKSMTIWFPSDLLDGISISCSVAIN----GV----CLSVTKIE-GNYISFDVI--NETLKITNLKAV   76 (229)
Q Consensus         9 ~G~I~~i~~-~~~~~~l~i~~p~~~~~~l~~g~SIAVn----Gv----cLTV~~i~-~~~f~v~li--peTL~~TtL~~l   76 (229)
                      +.+|.++++ .++.+.|+++.|..+  ...+|..+.+.    |-    ++|+.+-. ++.+.+.+.  |.=.-...|.++
T Consensus         5 ~~kV~~v~~~t~~~~~~~l~~~~~~--~f~aGQ~~~l~~~~~g~~~~R~ySi~S~p~~~~~~~~i~~~~~G~~S~~L~~l   82 (99)
T d1a8pa1           5 VERVLSVHHWNDTLFSFKTTRNPSL--RFENGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFSIKVQNGPLTSRLQHL   82 (99)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCTTC--CCCTTCEEEEEEEETTEEEEEEEECCSCTTSSEEEEEEECCSSCSSHHHHTTC
T ss_pred             eEEEEEEEecCCCEEEEEecCCCCC--ccCCCcEEEEeccCCCceeEeeccccCCCCCCcEEEEEEEeCCCChhHHHHhC
Confidence            457888776 567888888887654  37789988884    32    55555432 344444443  322223456789


Q ss_pred             CCCCeeee-ccC
Q psy4641          77 AVDQFVNL-ERS   87 (229)
Q Consensus        77 k~Gd~VNL-Era   87 (229)
                      ++||.|.+ +-|
T Consensus        83 ~~Gd~v~v~~gP   94 (99)
T d1a8pa1          83 KEGDELMVSRKP   94 (99)
T ss_dssp             CTTCEEEEESCC
T ss_pred             CCCCEEEECCCC
Confidence            99999988 434