Psyllid ID: psy4655

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-----
MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQKTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEVKYRIPLPLTVDEYKIAQLYMIAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSDLRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNKSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLENPEENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPESVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSDANVDMTAKKSDTTTFRGAFESVIRQHYPSMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGKVAGKKRGLASVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSGGANGTDIPSDGLQSASSHSTAPSASTITSAPNPALKTLADALDSIEKSDSELQQHVSTPKPASVPASASSKHLSSHSSNYSEAILNT
cEEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccccEEEEEEccccHHHHHHHHcccccEEEEEcccccEEcccccccccEEEEEEccccccccccccccccccEEEcccEEccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccEEEEcccccccccccHHHHHHHccccccccccccccEEEEEEEEEEEEEEEcccccccccccccEEEEEEEEEEEEEEcccccccccccccccHHHHHHcccccccHHcccccccccHHHHHcccccEEEEEEcccccccEEEEEEEEEcccccccccccccccccccccHHHccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccHHHHHHHHHHHHHcccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccHHHHHcc
cEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHcEccccEEEEEEcccccccccccccccEEEEEcccEEEEEEEcccccHHHHHHHccHHcEEEHHHccccccEEEccccccccEEEEEEEEEEcccccHHcHccEEEEEEEEcccccccccccccccccccccccEEcccHHHHHccEEEEEEEEcccccHHHccHcccccHEEEcccccccccccHHHHHHHHcccccccccccccEEEEEEEEEEEEEEEcHHHHHHHHHcccccHEEEEEEEEEEEcccccHHHHcEEEEEEEEEEccccccHHHHcccccccccEEEEEEEEccEEEEEEEccccHcEEEEEEEEEcccccccHHHHccccccccccccHHHHccEEEEEHHccccccccHHcccccccccccEEEccccccccccccHHHcccccccEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHccc
mlikeyriplpltvdEYKIAQLYMIAKKSreeskgagsgveilynepydndeeapgtkgqktvkiyplEWKIYhvgshlpgwiksllpksalevkyriplpltvdEYKIAQLYMIAVSdlsqggdissqhRIKQTFNLRSSltrlglkpyskklnprlrcgdcrgkefqlsgsdLRSRIVEVIDVVkdqlyggdyvreedpsiyvskttgrgplsenWISEYWNAvkedptvshdnksMMCAYKLCKIQLNywgiqskghdqphngQALMCAYKLCRVQFHYWgmqtklenpeenhkiyhvgshlpgwiksllpksalEVKEEAwnaypftktvyscdfVKNFkleittkylpesVLAWAWQDewnglnieDIRKIERDTAEALKLKMsdanvdmtakksdtttfRGAFESVIRQhypsmmgrghdqphngQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGKVAGKKRGLASVLAWAWQdewnglniEDIRKIERDTAEALKLKmsggangtdipsdglqsasshstapsastitsapnpaLKTLADALDSIEKSDSElqqhvstpkpasvpasasskhlsshssnysEAILNT
mlikeyriplpltvdeYKIAQLYMIAKksreeskgagsgVEILYNEpydndeeapgtkgqKTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEVKYRIPLPLTVDEYKIAQLYMIAVSDLSQGGDISSQHRIKQTfnlrssltrlglkpyskklnprlrcgdcrgkefqlsgsdlrsrIVEVIdvvkdqlyggdyvreedpsiyvskttgrgplsENWISEYWNAVKEDPTVSHDNKSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLENPEENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPESVLAWAWQDEWNGLNIEDIRKIERDTAEALKlkmsdanvdmtakksdtttfrgAFESVIRQHYPSMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGKVAGKKRGLASVLAWAWqdewnglniedIRKIERDTAEALKLKMSGGANGTDIPSDGLQSASSHSTAPSastitsapnpALKTLADALDSIEKSDSELQQHvstpkpasvpasasskhlsshssnyseailnt
MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQKTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEVKYRIPLPLTVDEYKIAQLYMIAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSDLRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNKSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLENPEENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPESVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSDANVDMTAKKSDTTTFRGAFESVIRQHYPSMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGKVAGKKRGLASVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSGGANGTDIPSDGLQsasshstapsastitsapnpaLKTLADALDSIEKSDSELQQHvstpkpasvpasasskhlsshssnysEAILNT
***KEYRIPLPLTVDEYKIAQLYMIA****************L*****************KTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEVKYRIPLPLTVDEYKIAQLYMIAVSDLSQGGDI****RIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSDLRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNKSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLENPEENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPESVLAWAWQDEWNGLNIEDIRKIERDT************************FRGAFESVIRQ***************GQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGKVAGKKRGLASVLAWAWQDEWNGLNIEDIRKIE****************************************************************************************************
MLIKEYRIPLPLTVDEYKIAQLYMI******************YNEPYDNDEEAPGTKGQKTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEVKYRIPLPLTVDEYKIAQLYMIAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSDLRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNKSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLENPEENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPESV***********LNIEDIRKIERDTAEALKLKMSDANVDMTAKKSDTTTFRGAFESVIRQHYPSMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGKVAGKKRGLASVLAWAWQDEWNGLNIEDIRKIERD**************************************************************************************************
MLIKEYRIPLPLTVDEYKIAQLYMIAKK********GSGVEILYNEPYDNDEEAPGTKGQKTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEVKYRIPLPLTVDEYKIAQLYMIAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSDLRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNKSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLENPEENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPESVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSDANVDMTAKKSDTTTFRGAFESVIRQHYPSMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGKVAGKKRGLASVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSGGANGTDIPS******************TSAPNPALKTLADALDSIE*****************************************
MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQKTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEVKYRIPLPLTVDEYKIAQLYMIAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSDLRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNKSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLENPEENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPESVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSDANVDMTAKKSDTTTFRGAFESVIRQHYPSMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGKVAGKKRGLASVLAWAWQDEWNGLNIEDIRKIERDTAEALKLK******************************************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQKTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEVKYRIPLPLTVDEYKIAQLYMIAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSDLRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNKSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLENPEENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPESVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSDANVDMTAKKSDTTTFRGAFESVIRQHYPSMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGKVAGKKRGLASVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSGGANGTDIPSDGLQSASSHSTAPSASTITSAPNPALKTLADALDSIEKSDSELQQHVSTPKPASVPASASSKHLSSHSSNYSEAILNT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query595 2.2.26 [Sep-21-2011]
P43125 1259 Protein retinal degenerat yes N/A 0.445 0.210 0.425 1e-66
O35954 1243 Membrane-associated phosp yes N/A 0.341 0.163 0.411 1e-44
O00562 1244 Membrane-associated phosp yes N/A 0.341 0.163 0.411 3e-44
Q5U2N3 1242 Membrane-associated phosp yes N/A 0.341 0.163 0.407 5e-44
Q6ZPQ6 1335 Membrane-associated phosp no N/A 0.344 0.153 0.413 5e-43
Q9BZ72 1349 Membrane-associated phosp no N/A 0.346 0.152 0.414 3e-42
Q9NCL8264 Phosphatidylinositol tran yes N/A 0.339 0.765 0.351 6e-26
Q9NCL7259 Phosphatidylinositol tran no N/A 0.332 0.764 0.35 8e-26
Q54VC7287 Phosphatidylinositol tran no N/A 0.334 0.693 0.324 5e-25
P53810271 Phosphatidylinositol tran no N/A 0.349 0.767 0.318 8e-25
>sp|P43125|RDGB_DROME Protein retinal degeneration B OS=Drosophila melanogaster GN=rdgB PE=1 SV=2 Back     alignment and function desciption
 Score =  254 bits (650), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 166/390 (42%), Positives = 195/390 (50%), Gaps = 125/390 (32%)

Query: 1   MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQ 60
           MLIKEYRIPLPLTV+EY+IAQLYMIAKKSREES G GSGVEI+ NEPY   ++ PG  GQ
Sbjct: 1   MLIKEYRIPLPLTVEEYRIAQLYMIAKKSREESHGEGSGVEIIINEPY---KDGPGGNGQ 57

Query: 61  KTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEVKYRI--PLPLTVDEYKIAQLYMIAVS 118
            T KIY       HVG+HLPGWIKSLLPKSAL V+       P T   Y    +   ++ 
Sbjct: 58  YTKKIY-------HVGNHLPGWIKSLLPKSALTVEEEAWNAYPYTRTRYTCPFVEKFSL- 109

Query: 119 DLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSDLRSR 178
                 DI + +     +                           +   FQLSGSDLR+R
Sbjct: 110 ------DIETYYYPDNGY---------------------------QDNVFQLSGSDLRNR 136

Query: 179 IVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNKS 238
           IV+VID+VKDQL+GGDYV+EEDP  +VS  TGRGPL+E+W+ EYW  VK           
Sbjct: 137 IVDVIDIVKDQLWGGDYVKEEDPKHFVSDKTGRGPLAEDWLEEYWREVK----------- 185

Query: 239 MMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLENPEENHKI 298
                              K    P N  +LM AYK+CRV+F YWGMQTKLE      K 
Sbjct: 186 ------------------GKKQPTPRN-MSLMTAYKICRVEFRYWGMQTKLE------KF 220

Query: 299 YHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPESVLA 358
            H            L K  L    +A                                  
Sbjct: 221 IH---------DVALRKMMLRAHRQA---------------------------------- 237

Query: 359 WAWQDEWNGLNIEDIRKIERDTAEALKLKM 388
           WAWQDEW GL IEDIR++ER T  AL  KM
Sbjct: 238 WAWQDEWFGLTIEDIRELERQTQLALAKKM 267
May control phosphatidylinositol concentration in transport vesicles from the subrhabdomeric cisternae (SRC) to the rhabdomere. May function as a calcium transporter.
Drosophila melanogaster (taxid: 7227)
>sp|O35954|PITM1_MOUSE Membrane-associated phosphatidylinositol transfer protein 1 OS=Mus musculus GN=Pitpnm1 PE=1 SV=1 Back     alignment and function description
>sp|O00562|PITM1_HUMAN Membrane-associated phosphatidylinositol transfer protein 1 OS=Homo sapiens GN=PITPNM1 PE=1 SV=4 Back     alignment and function description
>sp|Q5U2N3|PITM1_RAT Membrane-associated phosphatidylinositol transfer protein 1 OS=Rattus norvegicus GN=Pitpnm1 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZPQ6|PITM2_MOUSE Membrane-associated phosphatidylinositol transfer protein 2 OS=Mus musculus GN=Pitpnm2 PE=1 SV=2 Back     alignment and function description
>sp|Q9BZ72|PITM2_HUMAN Membrane-associated phosphatidylinositol transfer protein 2 OS=Homo sapiens GN=PITPNM2 PE=1 SV=1 Back     alignment and function description
>sp|Q9NCL8|PITP1_DICDI Phosphatidylinositol transfer protein 1 OS=Dictyostelium discoideum GN=pitA PE=1 SV=1 Back     alignment and function description
>sp|Q9NCL7|PITP2_DICDI Phosphatidylinositol transfer protein 2 OS=Dictyostelium discoideum GN=pitB PE=2 SV=1 Back     alignment and function description
>sp|Q54VC7|PITP3_DICDI Phosphatidylinositol transfer protein 3 OS=Dictyostelium discoideum GN=pitC PE=3 SV=1 Back     alignment and function description
>sp|P53810|PIPNA_MOUSE Phosphatidylinositol transfer protein alpha isoform OS=Mus musculus GN=Pitpna PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query595
307210153 1276 Protein retinal degeneration B [Harpegna 0.442 0.206 0.412 2e-67
157109759291 retinal degeneration b protein [Aedes ae 0.453 0.927 0.411 1e-66
195393196 1247 GJ18902 [Drosophila virilis] gi|19414975 0.443 0.211 0.421 5e-66
195130521 1249 GI15095 [Drosophila mojavensis] gi|19390 0.443 0.211 0.419 6e-66
195058544 1306 GH17761 [Drosophila grimshawi] gi|193896 0.443 0.202 0.414 3e-65
195352456 1236 GM17640 [Drosophila sechellia] gi|194126 0.445 0.214 0.425 4e-65
442616289 1297 retinal degeneration B, isoform J [Droso 0.445 0.204 0.425 6e-65
281360846 1263 retinal degeneration B, isoform H [Droso 0.445 0.209 0.425 6e-65
24641869 1250 retinal degeneration B, isoform B [Droso 0.445 0.212 0.425 7e-65
24641867 1259 retinal degeneration B, isoform A [Droso 0.445 0.210 0.425 7e-65
>gi|307210153|gb|EFN86826.1| Protein retinal degeneration B [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 165/400 (41%), Positives = 199/400 (49%), Gaps = 137/400 (34%)

Query: 1   MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQ 60
           MLIKEYRIP+PLTV+EY+IAQLYMIAKKSREES GAGSGVEI+ N+PY    + PG  GQ
Sbjct: 1   MLIKEYRIPMPLTVEEYRIAQLYMIAKKSREESTGAGSGVEIIENKPY---SDGPGGDGQ 57

Query: 61  KTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEVKYRI--PLPLTVDEYKIAQLYMIAVS 118
            T+KIY       HVGSHLPGW KSLLPKSAL  K       P T   Y           
Sbjct: 58  YTLKIY-------HVGSHLPGWFKSLLPKSALIAKEEAWNAYPYTKTRYTC--------- 101

Query: 119 DLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRC-----GDCRGKEFQLSGS 173
                                         P+ +KL+  +          +   FQLSGS
Sbjct: 102 ------------------------------PFVEKLSVEVETYYFPDNGHQDNVFQLSGS 131

Query: 174 DLRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVS 233
           D R+R+V+VID+VKDQLYG DYV+EEDP +YVS+ TGRGPL + W+ +YW  V+      
Sbjct: 132 DYRNRVVDVIDIVKDQLYGSDYVKEEDPKMYVSEKTGRGPLEDTWLEDYWADVE------ 185

Query: 234 HDNKSMMCAYKLCKIQLNYWGIQSKGHDQPH-NGQALMCAYKLCRVQFHYWGMQTKLENP 292
                                    G  QP  +G++LMCAYKLCRV+F YWGMQ KLE  
Sbjct: 186 -------------------------GQQQPSPSGKSLMCAYKLCRVEFRYWGMQAKLEK- 219

Query: 293 EENHKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYL 352
                                                         F+ +  L  T   L
Sbjct: 220 ----------------------------------------------FIHDVALRKTM--L 231

Query: 353 PESVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSDAN 392
              + AWAWQDEWNGL +EDIR+IER T  AL+ KM  A+
Sbjct: 232 RAHIQAWAWQDEWNGLTMEDIREIERQTQLALQRKMGLAD 271

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157109759|ref|XP_001650810.1| retinal degeneration b protein [Aedes aegypti] gi|108868407|gb|EAT32632.1| AAEL015170-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|195393196|ref|XP_002055240.1| GJ18902 [Drosophila virilis] gi|194149750|gb|EDW65441.1| GJ18902 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195130521|ref|XP_002009700.1| GI15095 [Drosophila mojavensis] gi|193908150|gb|EDW07017.1| GI15095 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195058544|ref|XP_001995462.1| GH17761 [Drosophila grimshawi] gi|193896248|gb|EDV95114.1| GH17761 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195352456|ref|XP_002042728.1| GM17640 [Drosophila sechellia] gi|194126759|gb|EDW48802.1| GM17640 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|442616289|ref|NP_001259535.1| retinal degeneration B, isoform J [Drosophila melanogaster] gi|440216754|gb|AGB95377.1| retinal degeneration B, isoform J [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|281360846|ref|NP_001162751.1| retinal degeneration B, isoform H [Drosophila melanogaster] gi|272506100|gb|ACZ95286.1| retinal degeneration B, isoform H [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|24641869|ref|NP_511149.2| retinal degeneration B, isoform B [Drosophila melanogaster] gi|281360842|ref|NP_001162749.1| retinal degeneration B, isoform F [Drosophila melanogaster] gi|7292924|gb|AAF48315.1| retinal degeneration B, isoform B [Drosophila melanogaster] gi|272506098|gb|ACZ95284.1| retinal degeneration B, isoform F [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|24641867|ref|NP_727733.1| retinal degeneration B, isoform A [Drosophila melanogaster] gi|62473687|ref|NP_001014740.1| retinal degeneration B, isoform D [Drosophila melanogaster] gi|62473700|ref|NP_001014741.1| retinal degeneration B, isoform C [Drosophila melanogaster] gi|68845820|sp|P43125.2|RDGB_DROME RecName: Full=Protein retinal degeneration B; AltName: Full=Probable calcium transporter rdgB gi|15291155|gb|AAK92846.1| GH09970p [Drosophila melanogaster] gi|22832222|gb|AAF48316.2| retinal degeneration B, isoform A [Drosophila melanogaster] gi|61677898|gb|AAX52494.1| retinal degeneration B, isoform C [Drosophila melanogaster] gi|61677899|gb|AAX52495.1| retinal degeneration B, isoform D [Drosophila melanogaster] gi|220954854|gb|ACL89970.1| rdgB-PA [synthetic construct] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query595
UNIPROTKB|E2R6I2 1245 PITPNM1 "Uncharacterized prote 0.344 0.164 0.412 4.9e-65
UNIPROTKB|E1B9I9 1246 PITPNM1 "Uncharacterized prote 0.344 0.164 0.408 1.3e-64
UNIPROTKB|O00562 1244 PITPNM1 "Membrane-associated p 0.349 0.167 0.397 1.7e-64
FB|FBgn0003218 1259 rdgB "retinal degeneration B" 0.361 0.170 0.486 4.2e-54
UNIPROTKB|F1RUZ7 1243 PITPNM1 "Uncharacterized prote 0.327 0.156 0.411 2.1e-60
MGI|MGI:1336192 1335 Pitpnm2 "phosphatidylinositol 0.326 0.145 0.387 7.2e-59
UNIPROTKB|E2R183 909 PITPNM2 "Uncharacterized prote 0.332 0.217 0.380 1.7e-58
UNIPROTKB|E2R1A3 1327 PITPNM2 "Uncharacterized prote 0.332 0.149 0.380 7.4e-58
UNIPROTKB|F1N662 1318 PITPNM2 "Uncharacterized prote 0.332 0.150 0.375 2.9e-57
UNIPROTKB|F1RFJ7 1321 PITPNM2 "Uncharacterized prote 0.332 0.149 0.375 5.4e-57
UNIPROTKB|E2R6I2 PITPNM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 420 (152.9 bits), Expect = 4.9e-65, Sum P(2) = 4.9e-65
 Identities = 92/223 (41%), Positives = 132/223 (59%)

Query:   296 HKIYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPES 355
             HK+YHVGSH+PGW ++LLPK+AL+V+EE+WNAYP+T+T Y+C FV+ F +EI T YLP+ 
Sbjct:    60 HKVYHVGSHIPGWFRALLPKAALQVEEESWNAYPYTRTRYTCPFVEKFSIEIETYYLPDG 119

Query:   356 VLAWAWQDEWNGLNIEDIRKIER--DTAEALKLKMSDANVDMTAKKSDTTTFRGAFESVI 413
                     + N  N+    + +R  DT + ++  ++    +  A++ D   +R A     
Sbjct:   120 ------GQQPNVFNLSGAERRQRILDTIDIVRDAVAPG--EYKAEE-DPRLYRSAKTG-- 168

Query:   414 RQHYPSMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGKVAGKKRGLAS 473
             R        R   Q   G  LMCAYKLC+V+F YWGMQ K+E+F+H+ G      R  A 
Sbjct:   169 RGPLADDWARTAAQ--TGP-LMCAYKLCKVEFRYWGMQAKIEQFIHDVGLRRVMLR--AH 223

Query:   474 VLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSGGANGTDIP 516
               AW WQDEW  L++ DIR +E +TA  L  +M+    GT+ P
Sbjct:   224 RQAWCWQDEWTELSMADIRALEEETARMLAQRMAKCNTGTEGP 266
GO:0046872 "metal ion binding" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
UNIPROTKB|E1B9I9 PITPNM1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O00562 PITPNM1 "Membrane-associated phosphatidylinositol transfer protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0003218 rdgB "retinal degeneration B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1RUZ7 PITPNM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1336192 Pitpnm2 "phosphatidylinositol transfer protein, membrane-associated 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R183 PITPNM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2R1A3 PITPNM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N662 PITPNM2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFJ7 PITPNM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query595
pfam02121254 pfam02121, IP_trans, Phosphatidylinositol transfer 3e-73
cd08889260 cd08889, SRPBCC_PITPNM1-2_like, Lipid-binding SRPB 1e-60
cd07815251 cd07815, SRPBCC_PITP, Lipid-binding SRPBCC domain 2e-58
pfam02121254 pfam02121, IP_trans, Phosphatidylinositol transfer 7e-54
cd08889260 cd08889, SRPBCC_PITPNM1-2_like, Lipid-binding SRPB 2e-45
cd07815251 cd07815, SRPBCC_PITP, Lipid-binding SRPBCC domain 3e-44
cd08889260 cd08889, SRPBCC_PITPNM1-2_like, Lipid-binding SRPB 4e-44
cd08888258 cd08888, SRPBCC_PITPNA-B_like, Lipid-binding SRPBC 1e-32
cd08890250 cd08890, SRPBCC_PITPNC1_like, Lipid-binding SRPBCC 4e-32
cd08888258 cd08888, SRPBCC_PITPNA-B_like, Lipid-binding SRPBC 1e-26
cd08890250 cd08890, SRPBCC_PITPNC1_like, Lipid-binding SRPBCC 1e-25
cd08888258 cd08888, SRPBCC_PITPNA-B_like, Lipid-binding SRPBC 9e-16
cd08889260 cd08889, SRPBCC_PITPNM1-2_like, Lipid-binding SRPB 6e-07
cd08888258 cd08888, SRPBCC_PITPNA-B_like, Lipid-binding SRPBC 0.001
>gnl|CDD|111058 pfam02121, IP_trans, Phosphatidylinositol transfer protein Back     alignment and domain information 
 Score =  234 bits (599), Expect = 3e-73
 Identities = 132/396 (33%), Positives = 173/396 (43%), Gaps = 154/396 (38%)

Query: 1   MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQ 60
           MLIKEYRI LP++V EY++AQLYMIAKKSR ES G GSGVEIL NEPY++    PG KGQ
Sbjct: 1   MLIKEYRILLPMSVQEYQVAQLYMIAKKSRNESHGEGSGVEILSNEPYEDG---PGGKGQ 57

Query: 61  KTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEV-----------KYRIPLPLTVDEYKI 109
            T        KIYH+GS +P WI++LLP+ ALEV           + R   P  ++++ I
Sbjct: 58  YT-------HKIYHLGSKVPAWIRTLLPEGALEVHEEAWNAYPYTRTRYTNPY-MEDFSI 109

Query: 110 AQLYMIAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQ 169
                           I + +              LG +     L+P             
Sbjct: 110 ---------------KIETWY-----------KPDLGTQENVFNLSP------------- 130

Query: 170 LSGSDLRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKED 229
               D ++RI++ ID+V+DQ+  GDY  EEDP ++ S  TGRGPL  +W +E        
Sbjct: 131 ---KDWKTRIIDYIDIVRDQVSSGDYKAEEDPKLFHSVKTGRGPLGPDWKAEL------- 180

Query: 230 PTVSHDNKSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKL 289
                                       K  D P     LMCAYKLC V+F YWGMQTK+
Sbjct: 181 ---------------------------VKTGDCP-----LMCAYKLCTVEFRYWGMQTKV 208

Query: 290 ENPEENHKIYHVGSHLPGWIKSL-LPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLEIT 348
           EN                +I    L ++      +AW                       
Sbjct: 209 EN----------------FIHDQALRRTMTRAHRQAW----------------------- 229

Query: 349 TKYLPESVLAWAWQDEWNGLNIEDIRKIERDTAEAL 384
                       WQDEW GL +EDIR++E +T   L
Sbjct: 230 -----------CWQDEWTGLTMEDIRRLEEETQLHL 254

Along with the structurally unrelated Sec14p family (found in pfam00650), this family can bind/exchange one molecule of phosphatidylinositol (PI) or phosphatidylcholine (PC) and thus aids their transfer between different membrane compartments. There are three sub-families - all share an N-terminal PITP-like domain, whose sequence is highly conserved. It is described as consisting of three regions. The N-terminal region is thought to bind the lipid and contains two helices and an eight-stranded, mostly antiparallel beta-sheet. An intervening loop region, which is thought to play a role in protein-protein interactions, separates this from the C-terminal region, which exhibits the greatest sequence variation and may be involved in membrane binding. PITP alpha has a 16-fold greater affinity for PI than PC. Together with PITP beta, it is expressed ubiquitously in all tissues. Length = 254
>gnl|CDD|176898 cd08889, SRPBCC_PITPNM1-2_like, Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs) Back     alignment and domain information
>gnl|CDD|176857 cd07815, SRPBCC_PITP, Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins Back     alignment and domain information
>gnl|CDD|111058 pfam02121, IP_trans, Phosphatidylinositol transfer protein Back     alignment and domain information
>gnl|CDD|176898 cd08889, SRPBCC_PITPNM1-2_like, Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs) Back     alignment and domain information
>gnl|CDD|176857 cd07815, SRPBCC_PITP, Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins Back     alignment and domain information
>gnl|CDD|176898 cd08889, SRPBCC_PITPNM1-2_like, Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs) Back     alignment and domain information
>gnl|CDD|176897 cd08888, SRPBCC_PITPNA-B_like, Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs) Back     alignment and domain information
>gnl|CDD|176899 cd08890, SRPBCC_PITPNC1_like, Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs) Back     alignment and domain information
>gnl|CDD|176897 cd08888, SRPBCC_PITPNA-B_like, Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs) Back     alignment and domain information
>gnl|CDD|176899 cd08890, SRPBCC_PITPNC1_like, Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs) Back     alignment and domain information
>gnl|CDD|176897 cd08888, SRPBCC_PITPNA-B_like, Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs) Back     alignment and domain information
>gnl|CDD|176898 cd08889, SRPBCC_PITPNM1-2_like, Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs) Back     alignment and domain information
>gnl|CDD|176897 cd08888, SRPBCC_PITPNA-B_like, Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 595
cd08889260 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain 100.0
KOG3668|consensus269 100.0
cd08888258 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain o 100.0
cd07815251 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I 100.0
cd08890250 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of 100.0
PF02121254 IP_trans: Phosphatidylinositol transfer protein; I 100.0
cd08889260 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain 100.0
KOG3668|consensus269 100.0
cd08888258 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain o 100.0
cd07815251 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I 100.0
PF02121254 IP_trans: Phosphatidylinositol transfer protein; I 100.0
cd08890250 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of 100.0
>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs) Back     alignment and domain information 
Probab=100.00  E-value=7.7e-101  Score=767.77  Aligned_cols=254  Identities=57%  Similarity=1.016  Sum_probs=235.1

Q ss_pred             CcceEEeeecccChhHHHhHHHHHHHhhcccccCCCCceEEEEEcccCCCCCCCCCCcceEeeeecCCcceEEEccCChh
Q psy4655           1 MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQKTVKIYPLEWKIYHVGSHLP   80 (595)
Q Consensus         1 mlikEyRI~lPltveEY~i~QLYmv~k~S~ees~g~GeGVEvl~Nepy~~~~~~~~~~GqyT~~~~~~~~Kiyhl~sklP   80 (595)
                      |||||||||||||||||||||||||||+|+++|+|+|+|||||+||||++   +++|+|||||       |||||+||||
T Consensus         1 mlikEyRi~lPltveEY~igQLYmvak~S~eet~g~GeGVEvl~Nepy~~---~~~~~GqYT~-------Kiyhl~sklP   70 (260)
T cd08889           1 MLIKEYRIPLPMSVEEYRIAQLYMIQKKSREESKGEGSGVEILENRPYTD---GPGGSGQYTH-------KIYHIGSHIP   70 (260)
T ss_pred             CeeEEEEEecCCcHHHHHHHHHHHHHHHhhhccCCCCceEEEEecccccc---CCCCcceeEE-------EEEEccccCh
Confidence            89999999999999999999999999999999989999999999999999   5789999999       9999999999


Q ss_pred             HHHHhhcCCCceEEEEec--CCCceeeeEeecceehhhhcccCCCCCCccccccccccccccccceeeeecccccCCCcc
Q psy4655          81 GWIKSLLPKSALEVKYRI--PLPLTVDEYKIAQLYMIAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRL  158 (595)
Q Consensus        81 ~wi~~l~P~~al~v~E~a--ayPy~~T~y~~~~~ym~~~~~~~~~~~~~~~~~~k~~F~~~~~~~~l~iet~~~~~~~~~  158 (595)
                      +|||+|+|++||+|+|+|  |||||+|+|+|||     +++                |    +   |.|||+|+      
T Consensus        71 ~wl~~~~P~~al~v~EkaWNaYPy~~T~yt~~~-----~~k----------------F----~---i~IET~h~------  116 (260)
T cd08889          71 GWFRAILPKSALRVEEEAWNAYPYTRTRYTCPF-----VEK----------------F----S---LDIETYYF------  116 (260)
T ss_pred             HHHHHhCCCcceEEehhHhCCCCceEEEEecCC-----ccc----------------e----E---EEEEEEEc------
Confidence            999999999999999999  9999999999998     466                8    7   99999999      


Q ss_pred             CCCCC--CCCccCCCcccccceEEEEeeccCCCCCCCCCCCCCCCCcceecccCCCCCCCchhhhhhccccCCCCccccc
Q psy4655         159 RCGDC--RGKEFQLSGSDLRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDN  236 (595)
Q Consensus       159 ~~~d~--~~Nv~~L~~~~l~~R~V~~iDI~~d~~~~~dY~~eeDp~~~~s~~t~rGPl~~~W~~~~~~~~~~~~~~~~~~  236 (595)
                        +|+  ++|||||++++|++|+|++||||+|+++++||+++|||++|+|+|||||||.+||+++++             
T Consensus       117 --~d~g~~eNv~~L~~~~L~~ReV~~IDIa~d~v~~~dYk~eeDP~~f~S~kTgRGPL~~~W~~~~~-------------  181 (260)
T cd08889         117 --DDAGEQENVFNLSPAELRQRIIDFIDIVKDPVPGSDYKAEEDPKLYVSEKTGRGPLSDDWIEEYK-------------  181 (260)
T ss_pred             --CCCCCccccccCCHHHhhCceEEEEeccCCCCCccccCcccCcchhcccccCCCCCChhhhhhhc-------------
Confidence              444  999999999999999999999999999999999999999999999999999999986520             


Q ss_pred             chhhhhhhhhhhhcccccccccCCCCCCCCcceEEEEeEeEEEeeeecceeeccCCCccceEEEecCCchhhhHhhcCcc
Q psy4655         237 KSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLENPEENHKIYHVGSHLPGWIKSLLPKS  316 (595)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~YKlv~v~f~~wG~q~~vE~gqYThKiyhL~SKLP~WirallPk~  316 (595)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (260)
T cd08889         182 --------------------------------------------------------------------------------  181 (260)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhccCCcceEEEeccccccceEEEEeeecCCCcccccccccccCCCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q psy4655         317 ALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPESVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSDANVDMT  396 (595)
Q Consensus       317 aL~V~EkAWNAYPYtkTvYTcpf~~KF~I~IET~~~~d~g~~~~~~DNv~nLS~edLrkrEve~iDiv~~k~~~~~~Dp~  396 (595)
                                                                    +                               + 
T Consensus       182 ----------------------------------------------~-------------------------------~-  183 (260)
T cd08889         182 ----------------------------------------------D-------------------------------P-  183 (260)
T ss_pred             ----------------------------------------------c-------------------------------c-
Confidence                                                          0                               0 


Q ss_pred             ccccCCccccCcchhhhhcccCCccCCCCCCCCCCCceEEEEEEeEEEeeechhhHHHHHHHHHhh-ccccchhhhceee
Q psy4655         397 AKKSDTTTFRGAFESVIRQHYPSMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEFG-KVAGKKRGLASVL  475 (595)
Q Consensus       397 ~~~SDkt~~rg~l~~~~~~~~~~~tgRGplw~~~~~PiMcaYKLV~VeFkyWGlQtkVE~fIhk~~-r~~~~~rll~HRQ  475 (595)
                                                      ..+.|||||||||+|+|+|||||+|||+|||+++ |   ...+.+|||
T Consensus       184 --------------------------------~~~~PiMcaYKLv~v~f~~wG~q~rvE~fI~~~~lr---~~~l~~HRq  228 (260)
T cd08889         184 --------------------------------PGKGPIMCAYKLCKVEFRYWGMQTKIERFIHDVALR---KVMLRAHRQ  228 (260)
T ss_pred             --------------------------------CCCCCeEEEeEEEEEEEeeecchHHHHHHHHHhhhH---HHHHHHHHH
Confidence                                            0134899999999999999999999999999986 4   222338999


Q ss_pred             eeeeecccCCCCHHHHHHHHHHHHHHHHHHh
Q psy4655         476 AWAWQDEWNGLNIEDIRKIERDTAEALKLKM  506 (595)
Q Consensus       476 afcWiDEWygLTMeDIRe~E~Etqe~L~~k~  506 (595)
                      |||||||||||||||||+||++||++|++|+
T Consensus       229 ~fcW~DeW~gltmedIR~~E~etq~~L~~k~  259 (260)
T cd08889         229 AWCWQDEWYGLTMEDIRKLEEETQLALAQKM  259 (260)
T ss_pred             HheeHHHHcCCCHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999976

This subgroup includes an N-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class II phosphatidylinositol transfer protein (PITPs), PITPNM1/PITPalphaI/Nir2 (PYK2 N-terminal domain-interacting receptor2) and PITPNM2/PITPalphaII/Nir3), Drosophila RdgB, and related proteins. These are membrane associated multidomain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Ablation of the mouse gene en
>KOG3668|consensus Back     alignment and domain information
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs) Back     alignment and domain information
>cd07815 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins Back     alignment and domain information
>cd08890 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs) Back     alignment and domain information
>PF02121 IP_trans: Phosphatidylinositol transfer protein; InterPro: IPR001666 Phosphatidylinositol transfer protein (PITP) is a ubiquitous cytosolic protein, thought to be involved in transport of phospholipids from their site of synthesis in the endoplasmic reticulum and Golgi to other cell membranes [] Back     alignment and domain information
>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs) Back     alignment and domain information
>KOG3668|consensus Back     alignment and domain information
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs) Back     alignment and domain information
>cd07815 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins Back     alignment and domain information
>PF02121 IP_trans: Phosphatidylinositol transfer protein; InterPro: IPR001666 Phosphatidylinositol transfer protein (PITP) is a ubiquitous cytosolic protein, thought to be involved in transport of phospholipids from their site of synthesis in the endoplasmic reticulum and Golgi to other cell membranes [] Back     alignment and domain information
>cd08890 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query595
1kcm_A270 Crystal Structure Of Mouse Pitp Alpha Void Of Bound 7e-26
1kcm_A270 Crystal Structure Of Mouse Pitp Alpha Void Of Bound 1e-20
1t27_A271 The Structure Of Pitp Complexed To Phosphatidylchol 8e-26
1t27_A271 The Structure Of Pitp Complexed To Phosphatidylchol 2e-20
1uw5_A270 Structure Of Pitp-Alpha Complexed To Phosphatidylin 9e-25
1uw5_A270 Structure Of Pitp-Alpha Complexed To Phosphatidylin 3e-19
2a1l_A270 Rat Pitp-Beta Complexed To Phosphatidylcholine Leng 3e-23
2a1l_A270 Rat Pitp-Beta Complexed To Phosphatidylcholine Leng 7e-19
>pdb|1KCM|A Chain A, Crystal Structure Of Mouse Pitp Alpha Void Of Bound Phospholipid At 2.0 Angstroms Resolution Length = 270 Back     alignment and structure 
Iteration: 1

 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 134/270 (49%), Gaps = 62/270 (22%)
Query: 1   MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQ 60
           +L+KEYR+ LP++VDEY++ QLY +A+ S+ E+ G G GVE+L NEPY+ D+   G KGQ
Sbjct: 1   VLLKEYRVILPVSVDEYQVGQLYSVAEASKNET-GGGEGVEVLVNEPYEKDD---GEKGQ 56
Query: 61  KTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEVKYRI----PLPLTV--DEYKIAQLYM 114
            T        KIYH+ S +P +++ L P+ AL +  +     P   TV  +EY + + ++
Sbjct: 57  YTH-------KIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEY-MKEDFL 108
Query: 115 IAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSD 174
           I          I + H+             LG +    KL P              +   
Sbjct: 109 IK---------IETWHK-----------PDLGTQENVHKLEPE-------------AWKH 135
Query: 175 LRSRIVEVIDVVKDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSH 234
           + +  +++ D  + Q+   DY  EEDP+ + S  TGRGPL  NW  E          V+ 
Sbjct: 136 VEAIYIDIAD--RSQVLSKDYKAEEDPAKFKSVKTGRGPLGPNWKQE---------LVNQ 184
Query: 235 DNKSMMCAYKLCKIQLNYWGIQSKGHDQPH 264
            +   MCAYKL  ++  +WG+Q+K  +  H
Sbjct: 185 KDCPYMCAYKLVTVKFKWWGLQNKVENFIH 214
>pdb|1KCM|A Chain A, Crystal Structure Of Mouse Pitp Alpha Void Of Bound Phospholipid At 2.0 Angstroms Resolution Length = 270 Back     alignment and structure
>pdb|1T27|A Chain A, The Structure Of Pitp Complexed To Phosphatidylcholine Length = 271 Back     alignment and structure
>pdb|1T27|A Chain A, The Structure Of Pitp Complexed To Phosphatidylcholine Length = 271 Back     alignment and structure
>pdb|1UW5|A Chain A, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol Length = 270 Back     alignment and structure
>pdb|1UW5|A Chain A, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol Length = 270 Back     alignment and structure
>pdb|2A1L|A Chain A, Rat Pitp-Beta Complexed To Phosphatidylcholine Length = 270 Back     alignment and structure
>pdb|2A1L|A Chain A, Rat Pitp-Beta Complexed To Phosphatidylcholine Length = 270 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query595
1kcm_A270 PITP alpha, phosphatidylinositol transfer protein 8e-59
1kcm_A270 PITP alpha, phosphatidylinositol transfer protein 3e-41
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A* Length = 270 Back     alignment and structure
 Score =  196 bits (500), Expect = 8e-59
 Identities = 97/396 (24%), Positives = 144/396 (36%), Gaps = 136/396 (34%)

Query: 1   MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQ 60
           +L+KEYR+ LP++VDEY++ QLY +A+ S+ E+ G G GVE+L NEPY+ D    G KGQ
Sbjct: 1   VLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGG-GEGVEVLVNEPYEKD---DGEKGQ 56

Query: 61  KTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEV--KYRIPLPLTVDEYKIAQLYMIAVS 118
            T        KIYH+ S +P +++ L P+ AL +  K     P           YM    
Sbjct: 57  YT-------HKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNE--YMKEDF 107

Query: 119 DLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSDLRSR 178
            +     I + H+                                +    +L     +  
Sbjct: 108 LIK----IETWHKPDL---------------------------GTQENVHKLEPEAWKHV 136

Query: 179 IVEVIDVV-KDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNK 237
               ID+  + Q+   DY  EEDP+ + S  TGRGPL  NW  E  N             
Sbjct: 137 EAIYIDIADRSQVLSKDYKAEEDPAKFKSVKTGRGPLGPNWKQELVNQ------------ 184

Query: 238 SMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLENPEENHK 297
                                           MCAYKL  V+F +WG+Q K+EN      
Sbjct: 185 ---------------------------KDCPYMCAYKLVTVKFKWWGLQNKVEN------ 211

Query: 298 IYHVGSHLPGWIKSLLPKSALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPESVL 357
                                                    F+   +  + T +  +   
Sbjct: 212 -----------------------------------------FIHKQEKRLFTNFHRQ--- 227

Query: 358 AWAWQDEWNGLNIEDIRKIERDTAEALKLKMSDANV 393
            + W D+W  L ++DIR++E +T   L        V
Sbjct: 228 LFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKDPV 263
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A* Length = 270 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query595
1kcm_A270 PITP alpha, phosphatidylinositol transfer protein 100.0
1kcm_A270 PITP alpha, phosphatidylinositol transfer protein 100.0
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A* Back     alignment and structure
Probab=100.00  E-value=1.9e-98  Score=754.66  Aligned_cols=262  Identities=36%  Similarity=0.665  Sum_probs=229.7

Q ss_pred             CcceEEeeecccChhHHHhHHHHHHHhhcccccCCCCceEEEEEcccCCCCCCCCCCcceEeeeecCCcceEEEccCChh
Q psy4655           1 MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQKTVKIYPLEWKIYHVGSHLP   80 (595)
Q Consensus         1 mlikEyRI~lPltveEY~i~QLYmv~k~S~ees~g~GeGVEvl~Nepy~~~~~~~~~~GqyT~~~~~~~~Kiyhl~sklP   80 (595)
                      |||||||||||||||||||||||||||+|+++| |+|+|||||+||||++   ++|++|||||       |||||+||||
T Consensus         1 ~likEyRi~lPltveEY~igQlY~vak~S~~et-g~GeGVEvl~Nepy~~---~~g~~GqYT~-------Kiyhl~sklP   69 (270)
T 1kcm_A            1 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNET-GGGEGVEVLVNEPYEK---DDGEKGQYTH-------KIYHLQSKVP   69 (270)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHHHHHHHHHTTCS-STTTTEEEEEEEEEEC---TTSCEEEEEE-------EEEECGGGSC
T ss_pred             CceEEEEEecCCCHHHHHHHHHHHHHHhhHhhc-CCCceEEEEecccccc---CCCCccceEE-------EEEEccccCh
Confidence            899999999999999999999999999999998 8999999999999997   4678999999       9999999999


Q ss_pred             HHHHhhcCCCceEEEEec--CCCceeeeEeecceehhhhcccCCCCCCccccccccccccccccceeeeecccccCCCcc
Q psy4655          81 GWIKSLLPKSALEVKYRI--PLPLTVDEYKIAQLYMIAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRL  158 (595)
Q Consensus        81 ~wi~~l~P~~al~v~E~a--ayPy~~T~y~~~~~ym~~~~~~~~~~~~~~~~~~k~~F~~~~~~~~l~iet~~~~~~~~~  158 (595)
                      +||++|+|++||+|+|+|  |||||+|+|+|||  |  .+                +|    +   |.|||+|+      
T Consensus        70 ~wi~~~~P~~al~v~EkaWNayPy~~T~yt~~~--~--~~----------------kF----~---i~IET~h~------  116 (270)
T 1kcm_A           70 TFVRMLAPEGALNIHEKAWNAYPYCRTVITNEY--M--KE----------------DF----L---IKIETWHK------  116 (270)
T ss_dssp             HHHHTTSCTTTTEEEEEEEEETTEEEEEEEETT--T--GG----------------GE----E---EEEEEEEE------
T ss_pred             HHHHHhCCccceEEEeehhccCcceeeEecCCC--c--Cc----------------ce----E---EEEEEEEc------
Confidence            999999999999999999  9999999999997  2  23                49    7   99999999      


Q ss_pred             CCCCC--CCCccCCCcccccceEEEEeeccCC-CCCCCCCCCCCCCCcceecccCCCCCCCchhhhhhccccCCCCcccc
Q psy4655         159 RCGDC--RGKEFQLSGSDLRSRIVEVIDVVKD-QLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHD  235 (595)
Q Consensus       159 ~~~d~--~~Nv~~L~~~~l~~R~V~~iDI~~d-~~~~~dY~~eeDp~~~~s~~t~rGPl~~~W~~~~~~~~~~~~~~~~~  235 (595)
                        +|+  ++||||||+++|++|+|++||||+| +++++||+++|||++|+|++||||||.+||++++.            
T Consensus       117 --~d~g~~eNv~~L~~~~l~~reV~~IDIa~~~~~~~~dY~~eeDp~~f~S~ktgRGPL~~~W~~~~~------------  182 (270)
T 1kcm_A          117 --PDLGTQENVHKLEPEAWKHVEAIYIDIADRSQVLSKDYKAEEDPAKFKSVKTGRGPLGPNWKQELV------------  182 (270)
T ss_dssp             --SSSSCCSSTTCCCHHHHTTCEEEEECTTCGGGSCGGGCCGGGCTTTCCCTTTCCCCCCTTHHHHHT------------
T ss_pred             --CCCCCcccccCCChHHhcCceEEEEecccCcccccccCCcccCcchheecccCCCCCCcchhhhcc------------
Confidence              454  9999999999999999999999986 59999999999999999999999999999976410            


Q ss_pred             cchhhhhhhhhhhhcccccccccCCCCCCCCcceEEEEeEeEEEeeeecceeeccCCCccceEEEecCCchhhhHhhcCc
Q psy4655         236 NKSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLENPEENHKIYHVGSHLPGWIKSLLPK  315 (595)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~YKlv~v~f~~wG~q~~vE~gqYThKiyhL~SKLP~WirallPk  315 (595)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (270)
T 1kcm_A          183 --------------------------------------------------------------------------------  182 (270)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccchhhhhhccCCcceEEEeccccccceEEEEeeecCCCcccccccccccCCCHHHHHHHHHHHHHHhhhhccCCCCCC
Q psy4655         316 SALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPESVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSDANVDM  395 (595)
Q Consensus       316 ~aL~V~EkAWNAYPYtkTvYTcpf~~KF~I~IET~~~~d~g~~~~~~DNv~nLS~edLrkrEve~iDiv~~k~~~~~~Dp  395 (595)
                                                                      |                               
T Consensus       183 ------------------------------------------------~-------------------------------  183 (270)
T 1kcm_A          183 ------------------------------------------------N-------------------------------  183 (270)
T ss_dssp             ------------------------------------------------T-------------------------------
T ss_pred             ------------------------------------------------c-------------------------------
Confidence                                                            0                               


Q ss_pred             CccccCCccccCcchhhhhcccCCccCCCCCCCCCCCceEEEEEEeEEEeeechhhHHHHHHHHHhhccccchhhhceee
Q psy4655         396 TAKKSDTTTFRGAFESVIRQHYPSMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGKVAGKKRGLASVL  475 (595)
Q Consensus       396 ~~~~SDkt~~rg~l~~~~~~~~~~~tgRGplw~~~~~PiMcaYKLV~VeFkyWGlQtkVE~fIhk~~r~~~~~rll~HRQ  475 (595)
                                                       .+..|+|||||||+|+|+|||||+|||+|||+++|   ...+.+|||
T Consensus       184 ---------------------------------~~~~PiMc~YKLv~v~f~~wGlq~rvE~fI~~~~r---~i~~~~HRq  227 (270)
T 1kcm_A          184 ---------------------------------QKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQEK---RLFTNFHRQ  227 (270)
T ss_dssp             ---------------------------------STTCCCEEEEEEEEEEECCSSCHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred             ---------------------------------cCCCceEEEEEEEEEEEeecCchHHHHHHHHHHHH---HHHHHHHHH
Confidence                                             00237999999999999999999999999999975   222338999


Q ss_pred             eeeeecccCCCCHHHHHHHHHHHHHHHHH-HhcCCCCCCCC
Q psy4655         476 AWAWQDEWNGLNIEDIRKIERDTAEALKL-KMSGGANGTDI  515 (595)
Q Consensus       476 afcWiDEWygLTMeDIRe~E~Etqe~L~~-k~~~~~~g~~~  515 (595)
                      |||||||||||||||||+||+|||++|++ +..++.+|+.+
T Consensus       228 ~fcW~DeW~glTmedIR~~E~etq~~L~~~~~~~~~~~~~~  268 (270)
T 1kcm_A          228 LFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKDPVKGMTA  268 (270)
T ss_dssp             HHHTHHHHTTCCHHHHHHHHHHHHHCCCC------------
T ss_pred             HhccHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccCCccC
Confidence            99999999999999999999999999986 77788888764
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 595
d1t27a_269 d.129.3.4 (A:) Phoshatidylinositol transfer protei 2e-59
d1t27a_269 d.129.3.4 (A:) Phoshatidylinositol transfer protei 1e-45
d1t27a_269 d.129.3.4 (A:) Phoshatidylinositol transfer protei 2e-29
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 269 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Phoshatidylinositol transfer protein, PITP
domain: Phoshatidylinositol transfer protein, PITP
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  197 bits (502), Expect = 2e-59
 Identities = 83/261 (31%), Positives = 121/261 (46%), Gaps = 56/261 (21%)

Query: 1   MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQ 60
           +L+KEYR+ LP++VDEY++ QLY +A+ S+ E+ G G GVE+L NEPY+ D+   G KGQ
Sbjct: 1   VLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGG-GEGVEVLVNEPYEKDD---GEKGQ 56

Query: 61  KTVKIYPLEWKIYHVGSHLPGWIKSLLPKSALEV--KYRIPLPLTVDEYKIAQLYMIAVS 118
            T        KIYH+ S +P +++ L P+ AL +  K     P           YM    
Sbjct: 57  YT-------HKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNE--YM--KE 105

Query: 119 DLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRLRCGDCRGKEFQLSGSDLRSR 178
           D      I + H+     +L +      L+P                          +  
Sbjct: 106 DFLI--KIETWHK----PDLGTQENVHKLEP-----------------------EAWKHV 136

Query: 179 IVEVIDVV-KDQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHDNK 237
               ID+  + Q+   DY  EEDP+ + S  TGRGPL  NW  E  N           + 
Sbjct: 137 EAIYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQELVN---------QKDC 187

Query: 238 SMMCAYKLCKIQLNYWGIQSK 258
             MCAYKL  ++  +WG+Q+K
Sbjct: 188 PYMCAYKLVTVKFKWWGLQNK 208
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 269 Back     information, alignment and structure
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 269 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query595
d1t27a_269 Phoshatidylinositol transfer protein, PITP {Rat (R 100.0
d1t27a_269 Phoshatidylinositol transfer protein, PITP {Rat (R 100.0
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Phoshatidylinositol transfer protein, PITP
domain: Phoshatidylinositol transfer protein, PITP
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-99  Score=759.73  Aligned_cols=262  Identities=36%  Similarity=0.670  Sum_probs=239.3

Q ss_pred             CcceEEeeecccChhHHHhHHHHHHHhhcccccCCCCceEEEEEcccCCCCCCCCCCcceEeeeecCCcceEEEccCChh
Q psy4655           1 MLIKEYRIPLPLTVDEYKIAQLYMIAKKSREESKGAGSGVEILYNEPYDNDEEAPGTKGQKTVKIYPLEWKIYHVGSHLP   80 (595)
Q Consensus         1 mlikEyRI~lPltveEY~i~QLYmv~k~S~ees~g~GeGVEvl~Nepy~~~~~~~~~~GqyT~~~~~~~~Kiyhl~sklP   80 (595)
                      |||||||||||||||||||||||||||+|++|| |+|+|||||+||||++   +++|+|||||       |||||+||||
T Consensus         1 ~likEyRI~LPltveEYqigQLY~vak~S~eet-~ggeGVEvl~Nepy~~---~~~~~GqyT~-------Kiyhl~sklP   69 (269)
T d1t27a_           1 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNET-GGGEGVEVLVNEPYEK---DDGEKGQYTH-------KIYHLQSKVP   69 (269)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHHHHHHHHHHHTC-BTTBEEEEEEEEEEEC---TTCCEEEEEE-------EEEECTTTSC
T ss_pred             CeEEEEEEecCCcHHHHHHHHHHHHHHhhhhhc-CCCccEEEEEccCccc---CCCCcceeEe-------eEEEhhhhCh
Confidence            899999999999999999999999999999999 7899999999999998   5789999999       9999999999


Q ss_pred             HHHHhhcCCCceEEEEec--CCCceeeeEeecceehhhhcccCCCCCCccccccccccccccccceeeeecccccCCCcc
Q psy4655          81 GWIKSLLPKSALEVKYRI--PLPLTVDEYKIAQLYMIAVSDLSQGGDISSQHRIKQTFNLRSSLTRLGLKPYSKKLNPRL  158 (595)
Q Consensus        81 ~wi~~l~P~~al~v~E~a--ayPy~~T~y~~~~~ym~~~~~~~~~~~~~~~~~~k~~F~~~~~~~~l~iet~~~~~~~~~  158 (595)
                      +|||+|+|++||+|+|+|  |||||+|+|+|||     ++               ++|    +   |.|||+|+      
T Consensus        70 ~wir~~~P~~al~v~EkaWNaYPy~~T~yt~~~-----~~---------------~~F----~---i~IET~h~------  116 (269)
T d1t27a_          70 TFVRMLAPEGALNIHEKAWNAYPYCRTVITNEY-----MK---------------EDF----L---IKIETWHK------  116 (269)
T ss_dssp             HHHHTTSCTTTTCEEEEEEEETTEEEEEEECTT-----TG---------------GGE----E---EEEEEEEE------
T ss_pred             HHHHHhCCccccEEEEEeeccCceeEEeeecCC-----cc---------------cce----E---EEEEEEEc------
Confidence            999999999999999999  9999999999997     22               248    7   99999999      


Q ss_pred             CCCCC--CCCccCCCcccccceEEEEeeccC-CCCCCCCCCCCCCCCcceecccCCCCCCCchhhhhhccccCCCCcccc
Q psy4655         159 RCGDC--RGKEFQLSGSDLRSRIVEVIDVVK-DQLYGGDYVREEDPSIYVSKTTGRGPLSENWISEYWNAVKEDPTVSHD  235 (595)
Q Consensus       159 ~~~d~--~~Nv~~L~~~~l~~R~V~~iDI~~-d~~~~~dY~~eeDp~~~~s~~t~rGPl~~~W~~~~~~~~~~~~~~~~~  235 (595)
                        +|+  ++||||||+++|++|+|++||||+ |+++++||+++|||++|+|+|||||||.+||++++.+           
T Consensus       117 --~d~g~~eNv~~L~~e~l~~ReV~~IDIa~~d~v~~~dY~~eeDp~~f~S~kTgRGPL~~~W~~~~~~-----------  183 (269)
T d1t27a_         117 --PDLGTQENVHKLEPEAWKHVEAIYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPLGPNWKQELVN-----------  183 (269)
T ss_dssp             --SSCSCCTTTTCCCTTGGGGCEEEEECTTCGGGSCTTTCCGGGCTTTCCCTTTCCCCCCTTHHHHHTT-----------
T ss_pred             --CCCCCcccccCCCHHHhcceEEEEecccccCcCCcccCCcccCcCeeeeeecCCCCCCCcchhhhcc-----------
Confidence              444  999999999999999999999996 9999999999999999999999999999999865200           


Q ss_pred             cchhhhhhhhhhhhcccccccccCCCCCCCCcceEEEEeEeEEEeeeecceeeccCCCccceEEEecCCchhhhHhhcCc
Q psy4655         236 NKSMMCAYKLCKIQLNYWGIQSKGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLENPEENHKIYHVGSHLPGWIKSLLPK  315 (595)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~YKlv~v~f~~wG~q~~vE~gqYThKiyhL~SKLP~WirallPk  315 (595)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (269)
T d1t27a_         184 --------------------------------------------------------------------------------  183 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccchhhhhhccCCcceEEEeccccccceEEEEeeecCCCcccccccccccCCCHHHHHHHHHHHHHHhhhhccCCCCCC
Q psy4655         316 SALEVKEEAWNAYPFTKTVYSCDFVKNFKLEITTKYLPESVLAWAWQDEWNGLNIEDIRKIERDTAEALKLKMSDANVDM  395 (595)
Q Consensus       316 ~aL~V~EkAWNAYPYtkTvYTcpf~~KF~I~IET~~~~d~g~~~~~~DNv~nLS~edLrkrEve~iDiv~~k~~~~~~Dp  395 (595)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (269)
T d1t27a_         184 --------------------------------------------------------------------------------  183 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccCCccccCcchhhhhcccCCccCCCCCCCCCCCceEEEEEEeEEEeeechhhHHHHHHHHHhhccccchhhhceee
Q psy4655         396 TAKKSDTTTFRGAFESVIRQHYPSMMGRGHDQPHNGQALMCAYKLCRVQFHYWGMQTKLEKFVHEFGKVAGKKRGLASVL  475 (595)
Q Consensus       396 ~~~~SDkt~~rg~l~~~~~~~~~~~tgRGplw~~~~~PiMcaYKLV~VeFkyWGlQtkVE~fIhk~~r~~~~~rll~HRQ  475 (595)
                                                       +++.|+|||||||+|+|+|||||+|||+|||+++|   ...+.+|||
T Consensus       184 ---------------------------------~~~~piMcaYKlv~v~f~~wGlq~rvE~~I~~~~r---~~~l~~HRq  227 (269)
T d1t27a_         184 ---------------------------------QKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQEK---RLFTNFHRQ  227 (269)
T ss_dssp             ---------------------------------CSSSCCEEEEEEEEEEECCTTTHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred             ---------------------------------CCCCCEEEEEEEEEEEeeeecchHHHHHHHHHHHH---HHHHHHHHH
Confidence                                             00237999999999999999999999999999876   222338999


Q ss_pred             eeeeecccCCCCHHHHHHHHHHHHHHHHH-HhcCCCCCCCC
Q psy4655         476 AWAWQDEWNGLNIEDIRKIERDTAEALKL-KMSGGANGTDI  515 (595)
Q Consensus       476 afcWiDEWygLTMeDIRe~E~Etqe~L~~-k~~~~~~g~~~  515 (595)
                      ||||+||||||||+|||+||++||++|++ +-.++++|+.+
T Consensus       228 ~fcW~DeW~gmTmedIR~~E~e~q~~L~~~~~~~~~rg~~~  268 (269)
T d1t27a_         228 LFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKDPVKGMTA  268 (269)
T ss_dssp             HHHTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSCCCSSCC
T ss_pred             HheeHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccccCCcC
Confidence            99999999999999999999999999986 55589999875
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure