Psyllid ID: psy4669

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYHLALRAP
Secondary Structure (PSIPRED)
ccHHHHHHHHcccHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHccEEEEEcccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHccccccccccHHHHcccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHccHHHHHHHHHHcccEEEEEcccHHHHHHHHcccccccccccHHHccccccEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MTLKDLAksmgvdcdHLYEVMMYVdnsvnydrpssviydFQVIIDIIQKSGMkymvinptnsvaddsngkdverrppadpsvlmkrppvvtimghvdhgkttlldtlrntsvvksefggiTQHIGAFVGFLYHLALRAP
Flexible Loop (DISEMBL)
mtlkdlaksmgvdcDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTnsvaddsngkdverrppadpsvlmkrppvVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYHLALRAP
Low Complexity Region (SEG)
MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYHLALRAP
Disordered region (IsUnstruct)
*********MGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVIN*****************************PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYHLAL***
Disordered Region (DISOPRED)
MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDV**********LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVG**********
Disordered Region (DISEMBL)
MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYHLALRAP
Disordered Region (DISPRO)
MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNG********ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYHLAL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYHLALRAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
P46199	727	Translation initiation fa	yes	N/A	0.884	0.169	0.461	6e-24
P46198	727	Translation initiation fa	yes	N/A	0.884	0.169	0.476	1e-23
Q91YJ5	727	Translation initiation fa	yes	N/A	0.899	0.171	0.468	3e-23
B9M1G0	908	Translation initiation fa	yes	N/A	0.784	0.120	0.390	7e-18
Q9KA77	730	Translation initiation fa	yes	N/A	0.352	0.067	0.775	4e-17
Q39VA6	884	Translation initiation fa	yes	N/A	0.827	0.130	0.425	6e-17
Q6MMS6	975	Translation initiation fa	yes	N/A	0.820	0.116	0.415	6e-17
B5EI57	986	Translation initiation fa	yes	N/A	0.784	0.110	0.383	6e-17
C6E2Q0	980	Translation initiation fa	yes	N/A	0.784	0.111	0.383	8e-17
B7KIU2	1101	Translation initiation fa	yes	N/A	0.848	0.107	0.393	1e-16

>sp|P46199|IF2M_HUMAN Translation initiation factor IF-2, mitochondrial OS=Homo sapiens GN=MTIF2 PE=1 SV=2

 Score =  109 bits (272), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 60/130 (46%), Positives = 81/130 (62%), Gaps = 7/130 (5%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           MT+++LA++M  + D++YE ++  D  ++     S + D   I ++I K+GMK       
Sbjct: 97  MTIEELARAMEKNTDYVYEALLNTDIDIDSLEADSHL-DEVWIKEVITKAGMKL----KW 151

Query: 61  NSVADDS--NGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG 118
           + +  D     KD  RRP ADP++L  R PVVTIMGHVDHGKTTLLD  R T V   E G
Sbjct: 152 SKLKQDKVRKNKDAVRRPQADPALLTPRSPVVTIMGHVDHGKTTLLDKFRKTQVAAVETG 211

Query: 119 GITQHIGAFV 128
           GITQHIGAF+
Sbjct: 212 GITQHIGAFL 221

One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.
Homo sapiens (taxid: 9606)

>sp|P46198|IF2M_BOVIN Translation initiation factor IF-2, mitochondrial OS=Bos taurus GN=MTIF2 PE=1 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/130 (47%), Positives = 82/130 (63%), Gaps = 7/130 (5%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           MT+++LA++M  D D +YE +M     ++     S + D   I ++I+KSGMK       
Sbjct: 97  MTVEELARAMEKDIDCVYESLMNTAIDIDSLETHSRL-DEVWIKEVIKKSGMKL----KW 151

Query: 61  NSVADDS--NGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG 118
           + +  D     KD  +RP ADP++L+ R PVVTIMGHVDHGKTTLLD LR T V   E G
Sbjct: 152 SKLKQDKVRENKDAVKRPQADPALLIPRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAG 211

Query: 119 GITQHIGAFV 128
           GITQHIGAF+
Sbjct: 212 GITQHIGAFL 221

One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.

Bos taurus (taxid: 9913)

>sp|Q91YJ5|IF2M_MOUSE Translation initiation factor IF-2, mitochondrial OS=Mus musculus GN=Mtif2 PE=1 SV=2

 Score =  107 bits (266), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/128 (46%), Positives = 79/128 (61%), Gaps = 3/128 (2%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           MT++DLA +M  D D +YE ++     V+    +S + D   I ++I+K+GMK       
Sbjct: 97  MTVEDLASAMAKDIDCVYEALLNTAIDVDSLEANSHL-DEVWIKEVIKKAGMKLKWSKLK 155

Query: 61  NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
                ++  KD  RRP  DP++L  R PVVT+MGHVDHGKTTLLD LR T V   E GGI
Sbjct: 156 QERIREN--KDAVRRPGTDPALLKPRSPVVTVMGHVDHGKTTLLDKLRETQVAAMEVGGI 213

Query: 121 TQHIGAFV 128
           TQHIGAF+
Sbjct: 214 TQHIGAFL 221

One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.

Mus musculus (taxid: 10090)

>sp|B9M1G0|IF2_GEOSF Translation initiation factor IF-2 OS=Geobacter sp. (strain FRC-32) GN=infB PE=3 SV=1

 Score = 89.0 bits (219), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 24/133 (18%)

Query: 1   MTLKDLAKSMGVDCDHLYE------VMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKY 54
           +T+ +LAK MG+  + L        VM  +++++++D  + +  DF   I+         
Sbjct: 336 ITVGELAKRMGIKANDLIRALMKMGVMATINHALDFDTATILATDFGYEIE--------- 386

Query: 55  MVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114
                  +VA D +  ++    P  P  L+KRPPVVTIMGHVDHGKT+LLD +R T+V+ 
Sbjct: 387 -------NVALDID--EILESTPDTPESLVKRPPVVTIMGHVDHGKTSLLDAIRQTNVIA 437

Query: 115 SEFGGITQHIGAF 127
            E GGITQHIGA+
Sbjct: 438 GEAGGITQHIGAY 450

One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.

Geobacter sp. (strain FRC-32) (taxid: 316067)

>sp|Q9KA77|IF2_BACHD Translation initiation factor IF-2 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=infB PE=3 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 44/49 (89%)

Query: 79  DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAF 127
           DPS+L +RPPVVTIMGHVDHGKTTLLD++RNT V + E GGITQHIGA+
Sbjct: 225 DPSLLKERPPVVTIMGHVDHGKTTLLDSIRNTKVTEGEAGGITQHIGAY 273

One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

>sp|Q39VA6|IF2_GEOMG Translation initiation factor IF-2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=infB PE=3 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/127 (42%), Positives = 72/127 (56%), Gaps = 12/127 (9%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           +T+ +LAK MGV    L  V+M +      + P  V  D   +I     +   Y + N  
Sbjct: 312 ITVGELAKRMGVKATDLIRVLMKMGMMATINHPLDV--DTATLI----AAEFSYEIEN-- 363

Query: 61  NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
             VA D++  ++    P  P  L KRPPVVTIMGHVDHGKT+LLD +R  +V+  E GGI
Sbjct: 364 --VAIDTD--EMLESAPDTPESLKKRPPVVTIMGHVDHGKTSLLDAIREANVIAGEAGGI 419

Query: 121 TQHIGAF 127
           TQHIGA+
Sbjct: 420 TQHIGAY 426

One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.

Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)

>sp|Q6MMS6|IF2_BDEBA Translation initiation factor IF-2 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) GN=infB PE=3 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/130 (41%), Positives = 71/130 (54%), Gaps = 16/130 (12%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMY--VDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYM-VI 57
           M L DLA  MG+    L   +M   V  ++N D       DF  I  I+ + G +   V 
Sbjct: 395 MKLSDLAMEMGLKAPQLVRELMKQGVMANMNMD------LDFDTIALIVPEFGWEAQNVF 448

Query: 58  NPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF 117
              + VA+ +   D++  P       + RPPVVT+MGHVDHGKT+LLD +RN  V K E 
Sbjct: 449 KTADEVAEQTAFGDLDAAP-------VTRPPVVTVMGHVDHGKTSLLDAIRNADVAKGEA 501

Query: 118 GGITQHIGAF 127
           GGITQHIGA+
Sbjct: 502 GGITQHIGAY 511

One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.

Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) (taxid: 264462)

>sp|B5EI57|IF2_GEOBB Translation initiation factor IF-2 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=infB PE=3 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 24/133 (18%)

Query: 1   MTLKDLAKSMGVDCDHLYE------VMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKY 54
           +T+ +LAK MG+    L        VM  +++ +++D  + +  DF   I+         
Sbjct: 414 ITVGELAKRMGIKATDLIRALMKLGVMATINHPLDFDTATLLATDFGYEIE--------- 464

Query: 55  MVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114
                  +VA D +  ++    P  P  L+KRPPVVTIMGHVDHGKT+LLD +R  +V+ 
Sbjct: 465 -------NVALDVD--EILEAEPDTPESLLKRPPVVTIMGHVDHGKTSLLDAIREANVIA 515

Query: 115 SEFGGITQHIGAF 127
            E GGITQHIGA+
Sbjct: 516 GEAGGITQHIGAY 528

One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.

Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) (taxid: 404380)

>sp|C6E2Q0|IF2_GEOSM Translation initiation factor IF-2 OS=Geobacter sp. (strain M21) GN=infB PE=3 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 24/133 (18%)

Query: 1   MTLKDLAKSMGVDCDHLYE------VMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKY 54
           +T+ +LAK MG+    L        VM  +++ +++D  + +  DF   I+         
Sbjct: 408 ITVGELAKRMGIKATDLIRALMKLGVMATINHPLDFDTATLLATDFGYEIE--------- 458

Query: 55  MVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK 114
                  +VA D +  ++    P  P  L+KRPPVVTIMGHVDHGKT+LLD +R  +V+ 
Sbjct: 459 -------NVALDVD--EILEAEPDAPESLLKRPPVVTIMGHVDHGKTSLLDAIREANVIA 509

Query: 115 SEFGGITQHIGAF 127
            E GGITQHIGA+
Sbjct: 510 GEAGGITQHIGAY 522

One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.

Geobacter sp. (strain M21) (taxid: 443144)

>sp|B7KIU2|IF2_CYAP7 Translation initiation factor IF-2 OS=Cyanothece sp. (strain PCC 7424) GN=infB PE=3 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 9/127 (7%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           MT+++LA+ +G+    +  ++ +   +VN  +      DF  I  I ++  ++  + +P 
Sbjct: 517 MTVRELAERLGIAETEIIRILFFKGIAVNITQ----TLDFDTIQAIAEE--LEVQIESPE 570

Query: 61  NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
              A     K  E     D   L +RPPVVTIMGHVDHGKTTLLD++R T V + E GGI
Sbjct: 571 VKAAAT---KTTEMLDANDLENLHRRPPVVTIMGHVDHGKTTLLDSIRKTKVAQGEAGGI 627

Query: 121 TQHIGAF 127
           TQHIGA+
Sbjct: 628 TQHIGAY 634

One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
326914708	726	PREDICTED: translation initiation factor	0.928	0.177	0.540	2e-32
321463828	635	hypothetical protein DAPPUDRAFT_306984 [	0.913	0.2	0.551	7e-32
449496129	725	PREDICTED: translation initiation factor	0.899	0.172	0.523	9e-32
313661474	726	translation initiation factor IF-2, mito	0.920	0.176	0.522	3e-31
300676796	370	mitochondrial translational initiation f	0.899	0.337	0.523	1e-30
449269242	726	Translation initiation factor IF-2, mito	0.920	0.176	0.514	2e-30
300676893	404	mitochondrial translational initiation f	0.899	0.309	0.515	3e-30
427778325	721	Putative translational initiation factor	0.913	0.176	0.503	5e-30
332030140	702	Translation initiation factor IF-2, mito	0.906	0.179	0.519	7e-30
327262749	720	PREDICTED: translation initiation factor	0.920	0.177	0.522	1e-29

>gi|326914708|ref|XP_003203665.1| PREDICTED: translation initiation factor IF-2, mitochondrial-like [Meleagris gallopavo]

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/135 (54%), Positives = 92/135 (68%), Gaps = 6/135 (4%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           MT+++LA++MG D DH+YE ++Y D  VN   P SV+Y+  + + I++KSGMKY      
Sbjct: 97  MTVEELARAMGKDIDHIYEALLYTDIDVNSLEPDSVLYEDSIKL-IVKKSGMKYKSAKLR 155

Query: 61  NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
                +   KD  +RPPADP+ L  RPPVVTIMGHVDHGKTTLLD+LR T V   E GGI
Sbjct: 156 EE--KERENKDAVKRPPADPAFLTPRPPVVTIMGHVDHGKTTLLDSLRKTQVAAMEAGGI 213

Query: 121 TQHIGAFVGFLYHLA 135
           TQHIGA   FL HL+
Sbjct: 214 TQHIGA---FLVHLS 225

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321463828|gb|EFX74841.1| hypothetical protein DAPPUDRAFT_306984 [Daphnia pulex]

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 70/127 (55%), Positives = 89/127 (70%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           M++  LA +M  D DH++EVM+YVDNS +YD+P   I + +VI +I++KSGM+  +    
Sbjct: 10  MSVLQLASAMDKDLDHIFEVMIYVDNSADYDQPWKCIDNIKVIQEIVKKSGMRCTITAEP 69

Query: 61  NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
                +   KD  RRPPA  S  + R PVVTIMGHVDHGKTTLLD+LR+T VV  EFGGI
Sbjct: 70  TIETHNKEIKDAVRRPPAKASDCVPRHPVVTIMGHVDHGKTTLLDSLRHTRVVDGEFGGI 129

Query: 121 TQHIGAF 127
           TQHIGAF
Sbjct: 130 TQHIGAF 136

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449496129|ref|XP_002197017.2| PREDICTED: translation initiation factor IF-2, mitochondrial [Taeniopygia guttata]

 Score =  141 bits (355), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 67/128 (52%), Positives = 91/128 (71%), Gaps = 3/128 (2%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           MT+++LA++MG D DH+YEV++Y D +++   P S++++  + + I+QKSGMKY      
Sbjct: 96  MTVEELARAMGKDIDHIYEVLLYTDINLDSVEPDSILHEDHIKM-IVQKSGMKYKSAKLK 154

Query: 61  NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
                +    D  +RPPADP+VL  RPPVVTI+GHVDHGKTTLLD+LR T V   E GGI
Sbjct: 155 EE--KERKNTDAVKRPPADPAVLTPRPPVVTILGHVDHGKTTLLDSLRKTQVASMEAGGI 212

Query: 121 TQHIGAFV 128
           TQHIGAF+
Sbjct: 213 TQHIGAFI 220

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|313661474|ref|NP_001186353.1| translation initiation factor IF-2, mitochondrial [Gallus gallus]

 Score =  139 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/134 (52%), Positives = 91/134 (67%), Gaps = 6/134 (4%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           MT+++LA++MG D DH+YE ++Y D  V+   P S++Y+  + + I++KSGMKY      
Sbjct: 97  MTVEELARAMGKDVDHIYEALLYTDIDVDSLEPDSILYEDSIKL-IVKKSGMKYKSAKLR 155

Query: 61  NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
                +   KD  +RPPADP+ L  RPPVVTIMGHVDHGKTTLLD+LR T +   E GGI
Sbjct: 156 EE--KERENKDAVKRPPADPAFLTPRPPVVTIMGHVDHGKTTLLDSLRKTQLAAMEAGGI 213

Query: 121 TQHIGAFVGFLYHL 134
           TQHIGA   FL HL
Sbjct: 214 TQHIGA---FLVHL 224

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|300676796|gb|ADK26672.1| mitochondrial translational initiation factor 2, 5 prime [Zonotrichia albicollis]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 90/128 (70%), Gaps = 3/128 (2%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           MT+++LA++MG D DH+YEV++Y + S++   P S++ +  + + I+QKSGMKY      
Sbjct: 64  MTVEELAQAMGKDIDHVYEVLLYTNISLDSVEPDSILSEDHIKM-IVQKSGMKYKSAKLK 122

Query: 61  NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
                +    D  +RPPADP+VL  RPPVVTI+GHVDHGKTTLLD+LR T V   E GGI
Sbjct: 123 EE--KERKNTDAVKRPPADPAVLTPRPPVVTILGHVDHGKTTLLDSLRKTQVAAMEAGGI 180

Query: 121 TQHIGAFV 128
           TQHIGAF+
Sbjct: 181 TQHIGAFI 188

Source: Zonotrichia albicollis

Species: Zonotrichia albicollis

Genus: Zonotrichia

Family: Fringillidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449269242|gb|EMC80036.1| Translation initiation factor IF-2, mitochondrial [Columba livia]

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/134 (51%), Positives = 90/134 (67%), Gaps = 6/134 (4%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           MT+++LA++MG D DH+YE ++Y D  ++   P SV+Y+  + + I++KSGMKY      
Sbjct: 97  MTVEELARAMGKDVDHIYEALLYTDVDLDSLEPDSVLYEDHIKL-IVKKSGMKYKSAKLK 155

Query: 61  NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
                +    D  +RPPADP+ L  RPPVVTI+GHVDHGKTTLLD+LR T V   E GGI
Sbjct: 156 EE--KERENTDAVKRPPADPAALTPRPPVVTILGHVDHGKTTLLDSLRKTQVASMEAGGI 213

Query: 121 TQHIGAFVGFLYHL 134
           TQHIGA   FL HL
Sbjct: 214 TQHIGA---FLVHL 224

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|300676893|gb|ADK26765.1| mitochondrial translational initiation factor 2, 5 prime [Zonotrichia albicollis]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/128 (51%), Positives = 90/128 (70%), Gaps = 3/128 (2%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           MT+++LA++MG D DH+YEV++Y + +++   P S++ +  + + I+QKSGMKY      
Sbjct: 64  MTVEELAQAMGKDIDHVYEVLLYTNINLDSVEPDSILSEDHIKM-IVQKSGMKYKSAKLK 122

Query: 61  NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
                +    D  +RPPADP+VL  RPPVVTI+GHVDHGKTTLLD+LR T V   E GGI
Sbjct: 123 EE--KERKNTDAVKRPPADPAVLTPRPPVVTILGHVDHGKTTLLDSLRKTQVAAMEAGGI 180

Query: 121 TQHIGAFV 128
           TQHIGAF+
Sbjct: 181 TQHIGAFI 188

Source: Zonotrichia albicollis

Species: Zonotrichia albicollis

Genus: Zonotrichia

Family: Fringillidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|427778325|gb|JAA54614.1| Putative translational initiation factor if2 [Rhipicephalus pulchellus]

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 89/127 (70%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           +TL +LAK +    D +YE ++ V+N+  YD   S I D  ++  I+++ G++  ++ P 
Sbjct: 96  ITLAELAKVVERPIDDIYEAILLVENASQYDHDDSAIDDTDILFLILKRLGLRGQIVAPP 155

Query: 61  NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
              +   + +D  RRPP DPSVL+ RPPV+TIMGHVDHGKTTLLD+LRNT+VV  E+GGI
Sbjct: 156 EQQSPKKDFQDAVRRPPPDPSVLVPRPPVITIMGHVDHGKTTLLDSLRNTNVVDQEYGGI 215

Query: 121 TQHIGAF 127
           TQHIGAF
Sbjct: 216 TQHIGAF 222

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030140|gb|EGI69934.1| Translation initiation factor IF-2, mitochondrial [Acromyrmex echinatior]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/127 (51%), Positives = 94/127 (74%), Gaps = 1/127 (0%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           MT+ +LA S G D + + + + + D+S  Y+R ++++ D  ++ + ++K G K+ VI+ +
Sbjct: 80  MTVSELAASAGRDINDVMDAISFSDSSRRYNR-NTIVEDPNILYNAVRKLGAKFKVISRS 138

Query: 61  NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
           + +  ++   +V +RPP D SVL+KR PVVTIMGHVDHGKTTLLDTLRNTSVVK EFGGI
Sbjct: 139 DKIEKNTQNCNVVKRPPPDESVLIKRRPVVTIMGHVDHGKTTLLDTLRNTSVVKMEFGGI 198

Query: 121 TQHIGAF 127
           TQHIGAF
Sbjct: 199 TQHIGAF 205

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327262749|ref|XP_003216186.1| PREDICTED: translation initiation factor IF-2, mitochondrial-like [Anolis carolinensis]

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/134 (52%), Positives = 91/134 (67%), Gaps = 6/134 (4%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           MT++DLA++M  D DH+YE ++  +  ++   P SV+ D   I DI++KSGMKY      
Sbjct: 91  MTVEDLARAMQKDIDHIYEALLNTNVDLDSLEPDSVL-DEAWIKDIVKKSGMKYKFAKLK 149

Query: 61  NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
                ++  KD  +RPPADP++L  RPPVVTI+GHVDHGKTTLLD+LR T V  +E GGI
Sbjct: 150 EEKIKEN--KDAVKRPPADPALLTSRPPVVTILGHVDHGKTTLLDSLRKTQVAATEAGGI 207

Query: 121 TQHIGAFVGFLYHL 134
           TQHIGA   FL HL
Sbjct: 208 TQHIGA---FLVHL 218

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
UNIPROTKB|E1BZP9	726	MTIF2 "Translation initiation	0.920	0.176	0.522	1.2e-30
FB|FBgn0039588	696	CG12413 [Drosophila melanogast	0.906	0.181	0.492	4.9e-26
ZFIN|ZDB-GENE-030131-1092	705	mtif2 "mitochondrial translati	0.892	0.175	0.440	2.1e-24
UNIPROTKB|P46198	727	MTIF2 "Translation initiation	0.899	0.171	0.476	8.6e-22
UNIPROTKB|P46199	727	MTIF2 "Translation initiation	0.884	0.169	0.461	8.6e-22
UNIPROTKB|F1SQK6	727	MTIF2 "Translation initiation	0.892	0.170	0.465	1.1e-21
RGD|1303046	727	Mtif2 "mitochondrial translati	0.892	0.170	0.472	1.1e-21
MGI|MGI:1924034	727	Mtif2 "mitochondrial translati	0.899	0.171	0.476	1.4e-21
UNIPROTKB|J9P9B1	673	MTIF2 "Uncharacterized protein	0.899	0.185	0.460	2.5e-21
UNIPROTKB|E2R3A4	727	MTIF2 "Uncharacterized protein	0.899	0.171	0.460	3e-21

UNIPROTKB|E1BZP9 MTIF2 "Translation initiation factor IF-2" [Gallus gallus (taxid:9031)]

 Score = 346 (126.9 bits), Expect = 1.2e-30, P = 1.2e-30
 Identities = 70/134 (52%), Positives = 91/134 (67%)

Query:     1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
             MT+++LA++MG D DH+YE ++Y D  V+   P S++Y+  + + I++KSGMKY      
Sbjct:    97 MTVEELARAMGKDVDHIYEALLYTDIDVDSLEPDSILYEDSIKL-IVKKSGMKYKSAKLR 155

Query:    61 NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
                  +   KD  +RPPADP+ L  RPPVVTIMGHVDHGKTTLLD+LR T +   E GGI
Sbjct:   156 EE--KERENKDAVKRPPADPAFLTPRPPVVTIMGHVDHGKTTLLDSLRKTQLAAMEAGGI 213

Query:   121 TQHIGAFVGFLYHL 134
             TQHIGAF   L HL
Sbjct:   214 TQHIGAF---LVHL 224

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

FB|FBgn0039588 CG12413 [Drosophila melanogaster (taxid:7227)]

 Score = 303 (111.7 bits), Expect = 4.9e-26, P = 4.9e-26
 Identities = 63/128 (49%), Positives = 82/128 (64%)

Query:     1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVI-NP 59
             MT+  LAK +    D + E M+YV  + N + P+  + D ++I +I +K G K  V+  P
Sbjct:    76 MTVAQLAKELERSLDDVQEAMLYVKGADNIE-PAFKLADLKIIQEIAKKLGAKTRVVATP 134

Query:    60 TNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG 119
               + AD+   +DV  RPPA P +L  RPPVVT+MGHVDHGKTTLLD+LR   V   E GG
Sbjct:   135 EETNADEQKERDVAPRPPAAPELLQPRPPVVTVMGHVDHGKTTLLDSLRGADVAAGEAGG 194

Query:   120 ITQHIGAF 127
             ITQHIGAF
Sbjct:   195 ITQHIGAF 202

GO:0005739 "mitochondrion" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-030131-1092 mtif2 "mitochondrial translational initiation factor 2" [Danio rerio (taxid:7955)]

 Score = 288 (106.4 bits), Expect = 2.1e-24, P = 2.1e-24
 Identities = 56/127 (44%), Positives = 87/127 (68%)

Query:     1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
             M++ +LA +M  D DH+YE ++  +  ++   P +++ + + I + +++SGMKY      
Sbjct:    75 MSVSELASAMKRDIDHIYEALLNTEVDLDELEPDTMLEE-KWIKEAVKRSGMKYRWAKLV 133

Query:    61 NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
              +   ++  KD++R+PP DP+ L+ R PVVTIMGH+DHGKTTLLD+LR + +V  E GGI
Sbjct:   134 ETKVREN--KDIQRQPPPDPAQLVTRAPVVTIMGHIDHGKTTLLDSLRKSQIVAQEAGGI 191

Query:   121 TQHIGAF 127
             TQHIGAF
Sbjct:   192 TQHIGAF 198

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P46198 MTIF2 "Translation initiation factor IF-2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 264 (98.0 bits), Expect = 8.6e-22, P = 8.6e-22
 Identities = 61/128 (47%), Positives = 81/128 (63%)

Query:     1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
             MT+++LA++M  D D +YE +M     ++     S + D   I ++I+KSGMK       
Sbjct:    97 MTVEELARAMEKDIDCVYESLMNTAIDIDSLETHSRL-DEVWIKEVIKKSGMKLKWSKLK 155

Query:    61 NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
                  ++  KD  +RP ADP++L+ R PVVTIMGHVDHGKTTLLD LR T V   E GGI
Sbjct:   156 QDKVREN--KDAVKRPQADPALLIPRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGI 213

Query:   121 TQHIGAFV 128
             TQHIGAF+
Sbjct:   214 TQHIGAFL 221

GO:0005739 "mitochondrion" evidence=IDA

GO:0043024 "ribosomal small subunit binding" evidence=IDA

GO:0008135 "translation factor activity, nucleic acid binding" evidence=IDA

GO:0006446 "regulation of translational initiation" evidence=IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|P46199 MTIF2 "Translation initiation factor IF-2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 8.6e-22, P = 8.6e-22
 Identities = 60/130 (46%), Positives = 81/130 (62%)

Query:     1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
             MT+++LA++M  + D++YE ++  D  ++     S + D   I ++I K+GMK       
Sbjct:    97 MTIEELARAMEKNTDYVYEALLNTDIDIDSLEADSHL-DEVWIKEVITKAGMKLK----W 151

Query:    61 NSVADDS--NGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG 118
             + +  D     KD  RRP ADP++L  R PVVTIMGHVDHGKTTLLD  R T V   E G
Sbjct:   152 SKLKQDKVRKNKDAVRRPQADPALLTPRSPVVTIMGHVDHGKTTLLDKFRKTQVAAVETG 211

Query:   119 GITQHIGAFV 128
             GITQHIGAF+
Sbjct:   212 GITQHIGAFL 221

GO:0003924 "GTPase activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

GO:0043024 "ribosomal small subunit binding" evidence=ISS

GO:0006446 "regulation of translational initiation" evidence=ISS

UNIPROTKB|F1SQK6 MTIF2 "Translation initiation factor IF-2" [Sus scrofa (taxid:9823)]

 Score = 263 (97.6 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 60/129 (46%), Positives = 83/129 (64%)

Query:     1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVII-DIIQKSGMKYMVINP 59
             MT+++LA++M  D D +YE +M  + +V+ D   +  +  +V I ++I+KSGMK      
Sbjct:    97 MTVEELARAMEKDIDFIYESLM--NTAVDIDSLEADSHLDEVWIKEVIKKSGMKLKWSKL 154

Query:    60 TNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG 119
                   ++  KD  +RP  DP++L+ R PVV IMGHVDHGKTTLLD LR T V   E GG
Sbjct:   155 KQDKVREN--KDAVKRPQGDPALLIPRSPVVAIMGHVDHGKTTLLDQLRKTQVAAMEVGG 212

Query:   120 ITQHIGAFV 128
             ITQHIGAF+
Sbjct:   213 ITQHIGAFL 221

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

RGD|1303046 Mtif2 "mitochondrial translational initiation factor 2" [Rattus norvegicus (taxid:10116)]

 Score = 263 (97.6 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 61/129 (47%), Positives = 85/129 (65%)

Query:     1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVII-DIIQKSGMKYMVINP 59
             MT+++LA++M  D D +YE ++  + +++ D   +  +  +V I ++I+K+GMK +  + 
Sbjct:    97 MTVEELARAMAKDTDCVYEALL--NTAIDIDSLEANSHLDEVWIKEVIKKAGMK-LKWSK 153

Query:    60 TNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG 119
                     N KD  RRP ADP++L  R PVVTIMGHVDHGKTTLLD LR T V   E GG
Sbjct:   154 LKLERIREN-KDAVRRPGADPALLKPRSPVVTIMGHVDHGKTTLLDKLRETQVAAMEVGG 212

Query:   120 ITQHIGAFV 128
             ITQHIGAF+
Sbjct:   213 ITQHIGAFL 221

GO:0003743 "translation initiation factor activity" evidence=TAS

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=TAS

GO:0005739 "mitochondrion" evidence=ISO;ISS;TAS

GO:0006412 "translation" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006446 "regulation of translational initiation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

GO:0043024 "ribosomal small subunit binding" evidence=ISS

MGI|MGI:1924034 Mtif2 "mitochondrial translational initiation factor 2" [Mus musculus (taxid:10090)]

 Score = 262 (97.3 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 61/128 (47%), Positives = 80/128 (62%)

Query:     1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
             MT++DLA +M  D D +YE ++     V+    +S + D   I ++I+K+GMK +  +  
Sbjct:    97 MTVEDLASAMAKDIDCVYEALLNTAIDVDSLEANSHL-DEVWIKEVIKKAGMK-LKWSKL 154

Query:    61 NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
                    N KD  RRP  DP++L  R PVVT+MGHVDHGKTTLLD LR T V   E GGI
Sbjct:   155 KQERIREN-KDAVRRPGTDPALLKPRSPVVTVMGHVDHGKTTLLDKLRETQVAAMEVGGI 213

Query:   121 TQHIGAFV 128
             TQHIGAF+
Sbjct:   214 TQHIGAFL 221

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|J9P9B1 MTIF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 259 (96.2 bits), Expect = 2.5e-21, P = 2.5e-21
 Identities = 59/128 (46%), Positives = 81/128 (63%)

Query:     1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
             MT+++LA++M  D D ++E +M  D  ++     S + D   I ++I+K+ MK       
Sbjct:    97 MTVEELARAMEKDIDCVFEALMNTDIDIDSLEAHSHL-DEVWIKEVIKKTRMKLKWSKLK 155

Query:    61 NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
                  ++  KD  +RP ADP++L+ R PVVTIMGHVDHGKTTLLD LR T V   E GGI
Sbjct:   156 QDKVREN--KDAVKRPQADPALLIPRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGI 213

Query:   121 TQHIGAFV 128
             TQHIGAF+
Sbjct:   214 TQHIGAFL 221

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|E2R3A4 MTIF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 259 (96.2 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 59/128 (46%), Positives = 81/128 (63%)

Query:     1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
             MT+++LA++M  D D ++E +M  D  ++     S + D   I ++I+K+ MK       
Sbjct:    97 MTVEELARAMEKDIDCVFEALMNTDIDIDSLEAHSHL-DEVWIKEVIKKTRMKLKWSKLK 155

Query:    61 NSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI 120
                  ++  KD  +RP ADP++L+ R PVVTIMGHVDHGKTTLLD LR T V   E GGI
Sbjct:   156 QDKVREN--KDAVKRPQADPALLIPRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGI 213

Query:   121 TQHIGAFV 128
             TQHIGAF+
Sbjct:   214 TQHIGAFL 221

GO:0005739 "mitochondrion" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	139
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	5e-31
cd01887	169	cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ euk	8e-27
COG0532	509	COG0532, InfB, Translation initiation factor 2 (IF	1e-24
TIGR00487	587	TIGR00487, IF-2, translation initiation factor IF-	7e-23
CHL00189	742	CHL00189, infB, translation initiation factor 2; P	7e-21
PRK04004	586	PRK04004, PRK04004, translation initiation factor	4e-20
TIGR00491	590	TIGR00491, aIF-2, translation initiation factor aI	2e-16
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	2e-09
PRK14845	1049	PRK14845, PRK14845, translation initiation factor	7e-07
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	2e-04
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-04
cd01891	194	cd01891, TypA_BipA, Tyrosine phosphorylated protei	8e-04
COG0480	697	COG0480, FusA, Translation elongation factors (GTP	0.001
cd01885	218	cd01885, EF2, Elongation Factor 2 (EF2) in archaea	0.002
COG1217	603	COG1217, TypA, Predicted membrane GTPase involved	0.003
PRK04000	411	PRK04000, PRK04000, translation initiation factor	0.003

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score =  116 bits (292), Expect = 5e-31
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 39/137 (28%)

Query: 1   MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPT 60
           +T+ +LA+ M V                   + +          ++I+K     ++    
Sbjct: 182 ITVAELAEKMAV-------------------KAA----------EVIKKLFKLGVMATIN 212

Query: 61  NSVADDS-------NGKDVERRPPAD---PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNT 110
            S+  ++        G +V+     +      L+ RPPVVTIMGHVDHGKT+LLD +R T
Sbjct: 213 QSLDQETAELLAEEFGHEVKLVSLLEDDDEEDLVPRPPVVTIMGHVDHGKTSLLDAIRKT 272

Query: 111 SVVKSEFGGITQHIGAF 127
           +V   E GGITQHIGA+
Sbjct: 273 NVAAGEAGGITQHIGAY 289

Length = 746

>gnl|CDD|206674 cd01887, IF2_eIF5B, Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family

 Score = 97.5 bits (244), Expect = 8e-27
 Identities = 30/40 (75%), Positives = 34/40 (85%)

Query: 88  PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAF 127
           PVVT+MGHVDHGKTTLLD +R T+V   E GGITQHIGA+
Sbjct: 1   PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAY 40

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. Length = 169

>gnl|CDD|223606 COG0532, InfB, Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

 Score = 97.6 bits (244), Expect = 1e-24
 Identities = 33/42 (78%), Positives = 36/42 (85%)

Query: 86  RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAF 127
           RPPVVTIMGHVDHGKTTLLD +R T+V   E GGITQHIGA+
Sbjct: 4   RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAY 45

Length = 509

>gnl|CDD|232995 TIGR00487, IF-2, translation initiation factor IF-2

 Score = 92.5 bits (230), Expect = 7e-23
 Identities = 33/47 (70%), Positives = 41/47 (87%)

Query: 81  SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAF 127
            +L++RPPVVTIMGHVDHGKT+LLD++R T V + E GGITQHIGA+
Sbjct: 81  DLLVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAY 127

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU [Protein synthesis, Translation factors]. Length = 587

>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional

 Score = 86.8 bits (215), Expect = 7e-21
 Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 14/104 (13%)

Query: 24  VDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSVL 83
           V+  ++    S V  DF + I   +K+ +     N  N+ A   N               
Sbjct: 195 VNQIIDISIISQVADDFGINIISEEKNNINEKTSNLDNTSAFTEN--------------S 240

Query: 84  MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAF 127
           + RPP+VTI+GHVDHGKTTLLD +R T + + E GGITQ IGA+
Sbjct: 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAY 284

Length = 742

>gnl|CDD|235195 PRK04004, PRK04004, translation initiation factor IF-2; Validated

 Score = 84.8 bits (211), Expect = 4e-20
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 86  RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA 126
           R P+V ++GHVDHGKTTLLD +R T+V   E GGITQHIGA
Sbjct: 5   RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGA 45

Length = 586

>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2

 Score = 74.1 bits (182), Expect = 2e-16
 Identities = 28/41 (68%), Positives = 35/41 (85%)

Query: 86  RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA 126
           R P+V+++GHVDHGKTTLLD +R ++V K E GGITQHIGA
Sbjct: 3   RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGA 43

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; the alignment generated by This model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region [Protein synthesis, Translation factors]. Length = 590

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 18/70 (25%)

Query: 85  KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE----------------FGGITQHIGA-- 126
           KR   + I+GHVDHGKTTL D L   +   S+                  GIT  I A  
Sbjct: 1   KRHRNIGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVS 60

Query: 127 FVGFLYHLAL 136
           F      + +
Sbjct: 61  FETKKRLINI 70

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|237833 PRK14845, PRK14845, translation initiation factor IF-2; Provisional

 Score = 46.8 bits (111), Expect = 7e-07
 Identities = 19/26 (73%), Positives = 20/26 (76%)

Query: 101 TTLLDTLRNTSVVKSEFGGITQHIGA 126
           TTLLD +R T V K E GGITQHIGA
Sbjct: 475 TTLLDKIRKTRVAKKEAGGITQHIGA 500

Length = 1049

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 12/18 (66%), Positives = 15/18 (83%)

Query: 90  VTIMGHVDHGKTTLLDTL 107
           V ++GHVDHGKTTL  +L
Sbjct: 2   VGVIGHVDHGKTTLTGSL 19

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 87  PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG-GITQHIGA 126
              + I+G  + GK+TLL+ L    +  +E+  G T++   
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVT 41

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206678 cd01891, TypA_BipA, Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 12/18 (66%), Positives = 15/18 (83%)

Query: 90  VTIMGHVDHGKTTLLDTL 107
           + I+ HVDHGKTTL+D L
Sbjct: 5   IAIIAHVDHGKTTLVDAL 22

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. coli has been shown to be phosphorylated on a tyrosine residue, while BipA from Salmonella and from E. coli K12 strains is not phosphorylated under the conditions assayed. The phosphorylation apparently modifies the rate of nucleotide hydrolysis, with the phosphorylated form showing greatly increased GTPase activity. Length = 194

>gnl|CDD|223556 COG0480, FusA, Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 90  VTIMGHVDHGKTTLLDTL 107
           + I+ H+D GKTTL + +
Sbjct: 13  IGIVAHIDAGKTTLTERI 30

Length = 697

>gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 12/18 (66%), Positives = 15/18 (83%)

Query: 90  VTIMGHVDHGKTTLLDTL 107
           + I+ HVDHGKTTL D+L
Sbjct: 3   ICIIAHVDHGKTTLSDSL 20

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Second, the protein can be post-translationally modified by ADP-ribosylation. Various bacterial toxins perform this reaction after modification of a specific histidine residue to diphthamide, but there is evidence for endogenous ADP ribosylase activity. Similar to the bacterial toxins, it is presumed that modification by the endogenous enzyme also inhibits eEF2 activity. Length = 218

>gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 12/18 (66%), Positives = 15/18 (83%)

Query: 90  VTIMGHVDHGKTTLLDTL 107
           + I+ HVDHGKTTL+D L
Sbjct: 8   IAIIAHVDHGKTTLVDAL 25

Length = 603

>gnl|CDD|235194 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 2/22 (9%)

Query: 84  MKRPPVVTI--MGHVDHGKTTL 103
            K  P V I  +GHVDHGKTTL
Sbjct: 4   EKVQPEVNIGMVGHVDHGKTTL 25

Length = 411

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG1145|consensus	683		99.94
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.87
PRK05306	787	infB translation initiation factor IF-2; Validated	99.87
CHL00189	742	infB translation initiation factor 2; Provisional	99.85
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.73
PRK04004	586	translation initiation factor IF-2; Validated	99.12
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.01
KOG1144|consensus	1064		98.96
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.96
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.92
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.91
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.87
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.85
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.78
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.78
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.77
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.76
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.75
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.75
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.75
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.74
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.74
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.74
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.73
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.73
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.73
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.73
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.72
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.72
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.72
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.72
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.71
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.71
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.7
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.7
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.7
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.7
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.7
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.69
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.69
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.69
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.69
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.69
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.69
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.68
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.68
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.68
PRK10908	222	cell division protein FtsE; Provisional	98.67
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.67
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.67
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.67
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.67
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.67
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.67
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.67
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.66
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.66
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.66
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.66
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.66
PF04760	54	IF2_N: Translation initiation factor IF-2, N-termi	98.66
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.66
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.66
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.66
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.65
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.65
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.65
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.65
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.65
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.65
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.65
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.65
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.64
cd03246	173	ABCC_Protease_Secretion This family represents the	98.64
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.64
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.64
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.64
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.64
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.64
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.64
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.64
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.63
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.63
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.63
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.63
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.63
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.63
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.63
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.63
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.63
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.63
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.62
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.62
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.62
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.62
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.62
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.62
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.62
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.62
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.61
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.61
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.61
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.61
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.61
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.61
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.61
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.61
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.61
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.61
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.61
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.61
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.61
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.61
PRK14845	1049	translation initiation factor IF-2; Provisional	98.61
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.61
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.6
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.6
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.6
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.6
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.6
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.6
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.6
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.6
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.59
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.59
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.58
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.58
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.58
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.58
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.58
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.58
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.58
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.58
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.57
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.57
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.57
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.57
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.57
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.57
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.57
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.57
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.57
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.56
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.56
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.56
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.56
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.56
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.56
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.56
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.56
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.55
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.55
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.55
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.55
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.55
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.55
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.54
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.54
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.54
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.54
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.53
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.53
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.52
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.52
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.52
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.52
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.52
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.52
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.52
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.52
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.51
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.51
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.51
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.51
PRK10938	490	putative molybdenum transport ATP-binding protein	98.5
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.5
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.5
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.5
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.5
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.49
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.49
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.49
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.49
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.49
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.49
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.49
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.49
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.48
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.48
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.48
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.48
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.48
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.48
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.48
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.47
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.47
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.47
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.47
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.47
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.47
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.46
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.46
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.46
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.46
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.46
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.46
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.46
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.46
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.46
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.45
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.45
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.45
PRK11147	635	ABC transporter ATPase component; Reviewed	98.45
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.45
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.44
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.44
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.44
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.44
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.44
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.43
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.43
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.43
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.43
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.43
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.43
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.43
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.43
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.42
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.42
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.42
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.42
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.42
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.42
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.42
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.42
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.42
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.41
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.41
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.41
PRK11147	635	ABC transporter ATPase component; Reviewed	98.41
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.4
PLN03073	718	ABC transporter F family; Provisional	98.4
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.4
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.4
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.4
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.4
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.4
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.4
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.4
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.39
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.39
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.38
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.38
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.38
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.37
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.37
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.36
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.36
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.36
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.36
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.36
COG4559	259	ABC-type hemin transport system, ATPase component	98.36
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.36
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.35
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.35
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.35
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.35
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.35
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.34
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.34
PRK10938	490	putative molybdenum transport ATP-binding protein	98.34
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.34
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.34
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.34
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.33
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.33
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.32
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.32
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.31
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.3
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.29
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.29
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.28
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.27
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.27
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.26
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.26
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.26
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.26
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.25
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.25
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.25
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.24
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.23
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.23
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.22
PRK13409	590	putative ATPase RIL; Provisional	98.22
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.22
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.2
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.19
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.19
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.18
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.18
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.18
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.18
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.18
COG0488	530	Uup ATPase components of ABC transporters with dup	98.17
PRK13409	590	putative ATPase RIL; Provisional	98.17
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.16
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.15
COG1123	539	ATPase components of various ABC-type transport sy	98.15
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.14
PLN03211	659	ABC transporter G-25; Provisional	98.14
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.14
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.14
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.14
COG4988	559	CydD ABC-type transport system involved in cytochr	98.13
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	98.12
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.12
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.1
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.08
COG0488	530	Uup ATPase components of ABC transporters with dup	98.07
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.07
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.07
PRK10535	648	macrolide transporter ATP-binding /permease protei	98.06
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.05
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.05
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.03
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.02
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.01
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.01
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	98.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.95
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	97.95
PLN03073	718	ABC transporter F family; Provisional	97.94
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.93
PLN03140	1470	ABC transporter G family member; Provisional	97.93
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.92
COG4181	228	Predicted ABC-type transport system involved in ly	97.91
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.91
KOG0061|consensus	613		97.9
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.9
COG4674	249	Uncharacterized ABC-type transport system, ATPase	97.89
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.86
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	97.86
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.84
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	97.83
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	97.83
PLN03232	1495	ABC transporter C family member; Provisional	97.81
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.8
PTZ00243	1560	ABC transporter; Provisional	97.79
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	97.78
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.78
PLN03232	1495	ABC transporter C family member; Provisional	97.77
COG4987	573	CydC ABC-type transport system involved in cytochr	97.76
PLN03140	1470	ABC transporter G family member; Provisional	97.75
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	97.75
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.72
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	97.72
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	97.72
PLN03130	1622	ABC transporter C family member; Provisional	97.69
PTZ00243	1560	ABC transporter; Provisional	97.69
PLN03130	1622	ABC transporter C family member; Provisional	97.68
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.67
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.67
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	97.67
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	97.65
KOG0058|consensus	716		97.65
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.64
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	97.63
KOG0060|consensus	659		97.63
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	97.63
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	97.61
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	97.61
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	97.61
KOG0057|consensus	591		97.6
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	97.59
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	97.58
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	97.57
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	97.56
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.56
COG4178	604	ABC-type uncharacterized transport system, permeas	97.55
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	97.55
PRK00300	205	gmk guanylate kinase; Provisional	97.55
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	97.54
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	97.54
KOG0055|consensus	1228		97.54
PRK14738	206	gmk guanylate kinase; Provisional	97.54
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	97.53
PRK05480	209	uridine/cytidine kinase; Provisional	97.53
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	97.53
PRK09825	176	idnK D-gluconate kinase; Provisional	97.53
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.52
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.52
COG1123	539	ATPase components of various ABC-type transport sy	97.52
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.52
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	97.52
KOG0065|consensus	1391		97.5
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	97.5
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.49
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.49
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.45
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.44
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	97.43
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	97.43
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	97.42
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	97.4
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	97.39
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	97.39
smart00382	148	AAA ATPases associated with a variety of cellular	97.38
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	97.36
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	97.36
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.35
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	97.35
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.34
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.34
KOG0062|consensus	582		97.34
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	97.34
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.33
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	97.33
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.32
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	97.31
KOG0054|consensus	1381		97.31
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.29
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.29
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	97.29
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.28
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	97.28
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.28
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.27
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	97.27
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	97.27
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	97.25
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.24
PRK04213	201	GTP-binding protein; Provisional	97.23
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	97.23
KOG0056|consensus	790		97.22
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	97.21
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.19
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.19
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	97.17
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	97.16
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	97.16
PRK00098	298	GTPase RsgA; Reviewed	97.16
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.15
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.15
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.14
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	97.14
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.13
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.12
cd03239	178	ABC_SMC_head The structural maintenance of chromos	97.1
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.09
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.08
cd03112	158	CobW_like The function of this protein family is u	97.08
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	97.06
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.06
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.06
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.05
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	97.05
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	97.05
PRK08233	182	hypothetical protein; Provisional	97.04
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	97.04
KOG0927|consensus	614		97.04
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.04
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	97.04
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.03
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.03
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	97.02
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.01
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	97.01
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	97.0
COG1162	301	Predicted GTPases [General function prediction onl	96.97
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	96.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	96.97
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	96.97
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	96.97
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.96
cd01881	176	Obg_like The Obg-like subfamily consists of five w	96.96
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	96.96
PRK14737	186	gmk guanylate kinase; Provisional	96.96
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	96.96
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.96
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	96.96
PRK05541	176	adenylylsulfate kinase; Provisional	96.96
PLN02796	347	D-glycerate 3-kinase	96.95
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	96.94
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	96.94
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.94
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	96.93
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	96.93
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	96.92
COG3910	233	Predicted ATPase [General function prediction only	96.92

>KOG1145|consensus

Probab=99.94  E-value=4.7e-27  Score=208.78  Aligned_cols=130  Identities=44%  Similarity=0.628  Sum_probs=107.9

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeeeC-CCCccccCCCCCcccCCCCCC
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVIN-PTNSVADDSNGKDVERRPPAD   79 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~~-~~~~~~~~~~~~d~~~~~~~~   79 (139)
                      ||+.+||..++++..++++.|+..|...++....+.||.- .+.++++.+++++++.. +.++. .+..+.+..++++.+
T Consensus        68 m~~~kla~~~~~~~~~v~e~l~sv~~a~~~~~~~~~ld~~-~I~ev~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~a~  145 (683)
T KOG1145|consen   68 MTAAKLAAALKCSVDEVQEALLSVGFAYNLAIADSNLDTK-GILEVVELILMKYRFVLLPAETS-VEEKAADVAPQPEAD  145 (683)
T ss_pred             ccHHHHhhhhcCCHHHHHHHHHhccccccccccccccchH-HHHHHHHHHhhccccccCChhhh-hhhhhhhcccCCccC
Confidence            7899999999999999999999997422222222367754 77788999999888877 33332 223456667788888


Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY  132 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~  132 (139)
                      ++...+|+|||+||||+|||||||||+||++.++..|+||||||||||+|.+.
T Consensus       146 p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p  198 (683)
T KOG1145|consen  146 PKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP  198 (683)
T ss_pred             HhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC
Confidence            99999999999999999999999999999999999999999999999999986

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.87  E-value=4.8e-22  Score=178.29  Aligned_cols=121  Identities=35%  Similarity=0.499  Sum_probs=99.1

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeeeCCCCccccCCCCCcccCCCCCCC
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADP   80 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   80 (139)
                      |||+|||++|++++.+|++.||.+|.+  ++.|+ .||.+ +++++|+|||+++.........+     ...  .++.+.
T Consensus        12 ~~v~~la~~~~~~~~~~~~~l~~~g~~--~~~~~-~l~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~   80 (587)
T TIGR00487        12 LTVSELANKMNIKVSDIIKKLMLLGVM--VTINQ-VLDKE-TAELVAEEFGVKVEVRVTLEETE-----AEE--QDEDSG   80 (587)
T ss_pred             eEHHHHHHHHCcCHHHHHHHHHHCCCE--ecCCc-CcCHH-HHHHHHHHhCCceEEeccchhhh-----hhc--cccccc
Confidence            689999999999999999999999954  66776 89954 99999999999988755321111     111  112223


Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY  132 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~  132 (139)
                      +...+|+|++++|||+|||||||+++|++.++...+.|+|||++|+|++...
T Consensus        81 ~~~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~  132 (587)
T TIGR00487        81 DLLVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE  132 (587)
T ss_pred             cccccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC
Confidence            4567899999999999999999999999999999999999999999998874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.87  E-value=1.2e-21  Score=180.58  Aligned_cols=114  Identities=35%  Similarity=0.505  Sum_probs=97.8

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeeeCCCCccccCCCCCcccCCCCCCC
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADP   80 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   80 (139)
                      |||+|||++|++++.+||+.||.+|.+  ++.|+ .||. +++++||+|||+++....++.               ..+.
T Consensus       223 itv~ela~~~~~~~~~ii~~l~~~g~~--~~~n~-~l~~-~~~~~i~~e~g~~~~~~~~~~---------------~~~~  283 (787)
T PRK05306        223 ITVAELAEKMAVKAAEVIKKLFKLGVM--ATINQ-SLDQ-ETAELLAEEFGHEVKLVSLLE---------------DDDE  283 (787)
T ss_pred             cCHHHHHHHHCCCHHHHHHHHHHcCCe--ecCCC-ccCH-HHHHHHHHHcCCEEEEccccc---------------cccc
Confidence            799999999999999999999999854  66666 8985 599999999999988766431               0112


Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEeee
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYH  133 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~~  133 (139)
                      ....+|+|+++||||+|||||||+++|++.++...+.|+||||+|+|++.+.+
T Consensus       284 ~~~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~  336 (787)
T PRK05306        284 EDLVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG  336 (787)
T ss_pred             cccccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC
Confidence            23478999999999999999999999999999999999999999999998753

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.85  E-value=5.3e-21  Score=175.48  Aligned_cols=124  Identities=30%  Similarity=0.453  Sum_probs=98.8

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeeeCCCCccccCCCCCcccCCCCCCC
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADP   80 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   80 (139)
                      |||+|||++|++++.+||+.||.+|.+  ++.|+ .||. ++++.+|+|||+++.........+  ....  ...+..+.
T Consensus       166 ~tv~~la~~~~~~~~~ii~~l~~~g~~--~~~n~-~l~~-~~~~~~~~~~g~~~~~~~~~~~~~--~~~~--~~~~~~~~  237 (742)
T CHL00189        166 LTIQELSTLLCIPETEIIKSLFLKGIS--VTVNQ-IIDI-SIISQVADDFGINIISEEKNNINE--KTSN--LDNTSAFT  237 (742)
T ss_pred             cCHHHHHHHHCcCHHHHHHHHHHcCcC--ccCCC-ccCH-HHHHHHHHHcCCeEEEeccchhhh--hhhc--ccccccch
Confidence            699999999999999999999999854  66666 8985 499999999999987765321111  0001  01111123


Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY  132 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~  132 (139)
                      ....+|+|+++||||+|||||||+++|++..+...+.|++||++++|++.+.
T Consensus       238 ~~l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~  289 (742)
T CHL00189        238 ENSINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFE  289 (742)
T ss_pred             hhhcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEE
Confidence            4467999999999999999999999999988888999999999999998764

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=1.9e-18  Score=152.84  Aligned_cols=49  Identities=69%  Similarity=0.974  Sum_probs=47.4

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY  132 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~  132 (139)
                      ..|+||||||||+|||||||||.||+++++..|+|+||||||||+|.++
T Consensus         2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~   50 (509)
T COG0532           2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLD   50 (509)
T ss_pred             CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEec
Confidence            4699999999999999999999999999999999999999999999986

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.12  E-value=6.2e-11  Score=106.78  Aligned_cols=48  Identities=58%  Similarity=0.863  Sum_probs=45.1

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL  131 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~  131 (139)
                      ..|+|+++||||+|||||||+++|+++.+...+.|++|||||+|.+..
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~   50 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPI   50 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccc
Confidence            479999999999999999999999999999999999999999998764

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.01  E-value=3e-10  Score=102.68  Aligned_cols=48  Identities=58%  Similarity=0.875  Sum_probs=44.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY  132 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~  132 (139)
                      .|+|+++||||+|||||||+++|++..+...+.|++|||||+|.+...
T Consensus         2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~   49 (590)
T TIGR00491         2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMD   49 (590)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeec
Confidence            489999999999999999999999999999999999999999988653

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG1144|consensus

Probab=98.96  E-value=4e-10  Score=104.20  Aligned_cols=49  Identities=51%  Similarity=0.687  Sum_probs=44.3

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEE
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGF  130 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~  130 (139)
                      -.--|.||.|||||+|.|||-||++||++||..+++|||||.|||--+.
T Consensus       470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp  518 (1064)
T KOG1144|consen  470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFP  518 (1064)
T ss_pred             chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccc
Confidence            3456899999999999999999999999999999999999999984443

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.96  E-value=5.7e-10  Score=91.71  Aligned_cols=43  Identities=26%  Similarity=0.396  Sum_probs=38.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.+|++++|+|||||||||||+.|  +|+..+..|.|.-
T Consensus        20 ~~i~L~v~~GEfvsilGpSGcGKSTLLrii--AGL~~p~~G~V~~   62 (248)
T COG1116          20 EDINLSVEKGEFVAILGPSGCGKSTLLRLI--AGLEKPTSGEVLL   62 (248)
T ss_pred             ccceeEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEE
Confidence            468899999999999999999999999999  7788888886543

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.92  E-value=8.8e-10  Score=90.98  Aligned_cols=43  Identities=28%  Similarity=0.429  Sum_probs=39.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+|||||||||||++|  +++.++..|.|.-
T Consensus        19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l--~g~l~p~~G~V~l   61 (258)
T COG1120          19 DDLSFSIPKGEITGILGPNGSGKSTLLKCL--AGLLKPKSGEVLL   61 (258)
T ss_pred             ecceEEecCCcEEEEECCCCCCHHHHHHHH--hccCCCCCCEEEE
Confidence            468999999999999999999999999999  8888888887754

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.91  E-value=9.7e-10  Score=94.20  Aligned_cols=43  Identities=33%  Similarity=0.413  Sum_probs=38.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      ++.++.+.++++++++|||||||||||++|  +|+..+..|.|.-
T Consensus        22 ~~isl~i~~Gef~~lLGPSGcGKTTlLR~I--AGfe~p~~G~I~l   64 (352)
T COG3842          22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMI--AGFEQPSSGEILL   64 (352)
T ss_pred             ecceeeecCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEE
Confidence            468899999999999999999999999999  7777888887653

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.87  E-value=2.1e-09  Score=87.60  Aligned_cols=42  Identities=33%  Similarity=0.484  Sum_probs=35.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      ++.++.+.+++|++|+|||||||||||+||  .++.....|.|+
T Consensus        19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRcl--N~LE~~~~G~I~   60 (240)
T COG1126          19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCL--NGLEEPDSGSIT   60 (240)
T ss_pred             cCcceeEcCCCEEEEECCCCCCHHHHHHHH--HCCcCCCCceEE
Confidence            468899999999999999999999999999  555556666554

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.85  E-value=2.4e-09  Score=86.98  Aligned_cols=43  Identities=28%  Similarity=0.376  Sum_probs=37.4

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++++++|||||||||||||++|  .++..+..|.++
T Consensus        21 L~~v~l~i~~Ge~vaI~GpSGSGKSTLLnii--g~ld~pt~G~v~   63 (226)
T COG1136          21 LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLL--GGLDKPTSGEVL   63 (226)
T ss_pred             cccceEEEcCCCEEEEECCCCCCHHHHHHHH--hcccCCCCceEE
Confidence            4578999999999999999999999999999  777777777643

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.78  E-value=5.9e-09  Score=79.80  Aligned_cols=42  Identities=24%  Similarity=0.410  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +++.++..|.|+
T Consensus         9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~   50 (190)
T TIGR01166         9 KGLNFAAERGEVLALLGANGAGKSTLLLHL--NGLLRPQSGAVL   50 (190)
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceeEE
Confidence            467899999999999999999999999999  777788888774

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.78  E-value=5e-09  Score=89.42  Aligned_cols=42  Identities=24%  Similarity=0.372  Sum_probs=36.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+..+++++++|||||||||||++|  +|+..+..|.|.
T Consensus        20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~I--AGLe~~~~G~I~   61 (338)
T COG3839          20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMI--AGLEEPTSGEIL   61 (338)
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            468899999999999999999999999999  677777777663

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.77  E-value=5.8e-09  Score=81.13  Aligned_cols=42  Identities=26%  Similarity=0.419  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  +++.++..|.|+
T Consensus        21 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i--~Gl~~~~~G~i~   62 (218)
T cd03255          21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNIL--GGLDRPTSGEVR   62 (218)
T ss_pred             eeeEEEEcCCCEEEEEcCCCCCHHHHHHHH--hCCcCCCceeEE
Confidence            467899999999999999999999999999  777788888764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.76  E-value=6.9e-09  Score=80.30  Aligned_cols=42  Identities=29%  Similarity=0.408  Sum_probs=37.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|||||||||||++|  +++.++..|.|+
T Consensus        17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   58 (205)
T cd03226          17 DDLSLDLYAGEIIALTGKNGAGKTTLAKIL--AGLIKESSGSIL   58 (205)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence            467899999999999999999999999999  778888888764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.75  E-value=7.3e-09  Score=80.21  Aligned_cols=42  Identities=31%  Similarity=0.434  Sum_probs=37.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  ++..++..|.|+
T Consensus        18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~   59 (211)
T cd03225          18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLL--NGLLGPTSGEVL   59 (211)
T ss_pred             cceEEEEcCCcEEEEECCCCCCHHHHHHHH--hcCCCCCCceEE
Confidence            467899999999999999999999999999  777788888775

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.75  E-value=9.2e-09  Score=79.61  Aligned_cols=42  Identities=29%  Similarity=0.427  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  +|..++..|.|+
T Consensus        17 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~   58 (213)
T cd03262          17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCI--NLLEEPDSGTII   58 (213)
T ss_pred             cCceEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            467899999999999999999999999999  777788888765

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.75  E-value=7.5e-09  Score=80.56  Aligned_cols=42  Identities=24%  Similarity=0.411  Sum_probs=37.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++++++|+|+||||||||+++|  .++.++..|.|+
T Consensus        20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   61 (216)
T TIGR00960        20 DNLNFHITKGEMVFLVGHSGAGKSTFLKLI--LGIEKPTRGKIR   61 (216)
T ss_pred             EeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  777777778664

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.74  E-value=7.3e-09  Score=81.73  Aligned_cols=42  Identities=21%  Similarity=0.454  Sum_probs=37.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .++.++..|.|+
T Consensus        17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~p~~G~i~   58 (235)
T cd03261          17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLI--VGLLRPDSGEVL   58 (235)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  777888888765

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.74  E-value=1e-08  Score=79.97  Aligned_cols=42  Identities=26%  Similarity=0.427  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+|||||||||++|  ++..++..|.|.
T Consensus        22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   63 (228)
T cd03257          22 DDVSFSIKKGETLGLVGESGSGKSTLARAI--LGLLKPTSGSII   63 (228)
T ss_pred             cCceeEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            467899999999999999999999999999  777777888664

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.74  E-value=9.9e-09  Score=79.63  Aligned_cols=42  Identities=26%  Similarity=0.383  Sum_probs=37.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .+..++..|.|+
T Consensus        19 ~~is~~i~~G~~~~l~G~nGsGKSTLl~~i--~Gl~~~~~G~i~   60 (214)
T TIGR02673        19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLL--YGALTPSRGQVR   60 (214)
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            467899999999999999999999999999  777778888775

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.73  E-value=1.1e-08  Score=79.40  Aligned_cols=42  Identities=31%  Similarity=0.436  Sum_probs=37.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  .+..++..|.|+
T Consensus        16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~p~~G~i~   57 (213)
T cd03235          16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAI--LGLLKPTSGSIR   57 (213)
T ss_pred             ecceeEEcCCCEEEEECCCCCCHHHHHHHH--cCCCCCCCCEEE
Confidence            467899999999999999999999999999  777788888775

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.73  E-value=1e-08  Score=79.61  Aligned_cols=42  Identities=26%  Similarity=0.417  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +++.++..|.|+
T Consensus        17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~p~~G~i~   58 (213)
T cd03259          17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLI--AGLERPDSGEIL   58 (213)
T ss_pred             cceeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence            467899999999999999999999999999  777788888774

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.73  E-value=1.1e-08  Score=80.25  Aligned_cols=42  Identities=29%  Similarity=0.397  Sum_probs=37.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+||||||++|  +++.++..|.|.
T Consensus        17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   58 (232)
T cd03218          17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMI--VGLVKPDSGKIL   58 (232)
T ss_pred             ccceeEecCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            467899999999999999999999999999  777888888764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.73  E-value=1e-08  Score=80.74  Aligned_cols=41  Identities=22%  Similarity=0.262  Sum_probs=38.1

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++.+++|+||||||||||+++|  +++.++..|.++
T Consensus         5 ~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i--~Gl~~~~sG~i~   45 (213)
T PRK15177          5 KTDFVMGYHEHIGILAAPGSGKTTLTRLL--CGLDAPDEGDFI   45 (213)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCccCCCCCEE
Confidence            57899999999999999999999999999  788888899886

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.72  E-value=1.2e-08  Score=80.34  Aligned_cols=42  Identities=21%  Similarity=0.393  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  .++.++..|.|.
T Consensus        17 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   58 (236)
T cd03219          17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLI--SGFLRPTSGSVL   58 (236)
T ss_pred             cCceEEecCCcEEEEECCCCCCHHHHHHHH--cCCCCCCCceEE
Confidence            467899999999999999999999999999  777777888764

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.72  E-value=1.2e-08  Score=84.12  Aligned_cols=43  Identities=26%  Similarity=0.435  Sum_probs=40.1

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++.+++|+||||+|||||+++|  .|+.++..|.|.
T Consensus        20 l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~i--LGll~p~~G~i~   62 (254)
T COG1121          20 LEDISLSVEKGEITALIGPNGAGKSTLLKAI--LGLLKPSSGEIK   62 (254)
T ss_pred             eeccEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCcCCcceEE
Confidence            3578999999999999999999999999999  999999999887

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.72  E-value=1.1e-08  Score=80.03  Aligned_cols=42  Identities=29%  Similarity=0.404  Sum_probs=37.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +|..++..|.|+
T Consensus        17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~   58 (220)
T cd03265          17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKML--TTLLKPTSGRAT   58 (220)
T ss_pred             eceeEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  777788888775

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.72  E-value=9.7e-09  Score=79.94  Aligned_cols=42  Identities=29%  Similarity=0.439  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  .++.++..|.|+
T Consensus        17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   58 (222)
T cd03224          17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTI--MGLLPPRSGSIR   58 (222)
T ss_pred             eeeeEEEcCCeEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            457899999999999999999999999999  777777888765

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.71  E-value=1.1e-08  Score=79.73  Aligned_cols=42  Identities=26%  Similarity=0.389  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||+||||||++|  ++..++..|.|+
T Consensus        22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~   63 (221)
T TIGR02211        22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLL--GGLDNPTSGEVL   63 (221)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            467899999999999999999999999999  777778888764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.71  E-value=6.8e-09  Score=74.77  Aligned_cols=41  Identities=32%  Similarity=0.498  Sum_probs=36.6

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++.+++|+|++|||||||+++|  .+..++..|.|.
T Consensus         3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l--~g~~~~~~G~i~   43 (137)
T PF00005_consen    3 NVSLEIKPGEIVAIVGPNGSGKSTLLKAL--AGLLPPDSGSIL   43 (137)
T ss_dssp             EEEEEEETTSEEEEEESTTSSHHHHHHHH--TTSSHESEEEEE
T ss_pred             ceEEEEcCCCEEEEEccCCCccccceeee--cccccccccccc
Confidence            35788999999999999999999999999  888888888774

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.70  E-value=1.2e-08  Score=79.11  Aligned_cols=43  Identities=21%  Similarity=0.227  Sum_probs=37.8

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+||+|||||+++|  +++.++..|.|+
T Consensus        17 l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   59 (214)
T cd03292          17 LDGINISISAGEFVFLVGPSGAGKSTLLKLI--YKEELPTSGTIR   59 (214)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence            3467899999999999999999999999999  777777888764

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.70  E-value=1.3e-08  Score=79.22  Aligned_cols=42  Identities=29%  Similarity=0.381  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .++.++..|.|+
T Consensus        19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   60 (220)
T cd03263          19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKML--TGELRPTSGTAY   60 (220)
T ss_pred             cceEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            468899999999999999999999999999  777788888764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.70  E-value=1.3e-08  Score=78.82  Aligned_cols=42  Identities=29%  Similarity=0.441  Sum_probs=37.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  ++..++..|.|+
T Consensus        17 ~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   58 (208)
T cd03268          17 DDISLHVKKGEIYGFLGPNGAGKTTTMKII--LGLIKPDSGEIT   58 (208)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCcCCCceEEE
Confidence            467899999999999999999999999999  777777788664

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.70  E-value=1.4e-08  Score=79.89  Aligned_cols=42  Identities=29%  Similarity=0.449  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  .++.++..|.|+
T Consensus        18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   59 (241)
T cd03256          18 KDVSLSINPGEFVALIGPSGAGKSTLLRCL--NGLVEPTSGSVL   59 (241)
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCcCCCCceEE
Confidence            467899999999999999999999999999  777777778764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.70  E-value=1.5e-08  Score=80.06  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  .++.++..|.|.
T Consensus        19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   60 (243)
T TIGR02315        19 KNINLNINPGEFVAIIGPSGAGKSTLLRCI--NRLVEPSSGSIL   60 (243)
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCcCCCccEEE
Confidence            467899999999999999999999999999  777777788764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.69  E-value=1.6e-08  Score=79.59  Aligned_cols=42  Identities=21%  Similarity=0.418  Sum_probs=37.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +++.++..|.|+
T Consensus        22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~   63 (233)
T cd03258          22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCI--NGLERPTSGSVL   63 (233)
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            467899999999999999999999999999  778888888764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.69  E-value=1.4e-08  Score=79.40  Aligned_cols=42  Identities=24%  Similarity=0.393  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  +++.++..|.|+
T Consensus        21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   62 (220)
T cd03293          21 EDISLSVEEGEFVALVGPSGCGKSTLLRII--AGLERPTSGEVL   62 (220)
T ss_pred             eceeEEEeCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  777777888765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.69  E-value=1.2e-08  Score=79.01  Aligned_cols=42  Identities=19%  Similarity=0.359  Sum_probs=37.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  +|..++..|.|+
T Consensus        17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   58 (210)
T cd03269          17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMI--LGIILPDSGEVL   58 (210)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            457899999999999999999999999999  777777788764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.69  E-value=1.6e-08  Score=79.37  Aligned_cols=42  Identities=31%  Similarity=0.423  Sum_probs=37.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  .+..++..|.|+
T Consensus        17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~   58 (230)
T TIGR03410        17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTL--MGLLPVKSGSIR   58 (230)
T ss_pred             cceeeEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCEEE
Confidence            467899999999999999999999999999  778788888765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.69  E-value=1.5e-08  Score=78.05  Aligned_cols=42  Identities=24%  Similarity=0.407  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .|+.++..|.|.
T Consensus        15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   56 (206)
T TIGR03608        15 DDLNLTIEKGKMYAIIGESGSGKSTLLNII--GLLEKFDSGQVY   56 (206)
T ss_pred             eceEEEEeCCcEEEEECCCCCCHHHHHHHH--hcCCCCCCeEEE
Confidence            467899999999999999999999999999  777777888664

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.69  E-value=1.6e-08  Score=78.47  Aligned_cols=42  Identities=24%  Similarity=0.316  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +++.++..|.+.
T Consensus        17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~v~   58 (213)
T cd03301          17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMI--AGLEEPTSGRIY   58 (213)
T ss_pred             eceEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  777777788665

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.68  E-value=1.6e-08  Score=78.64  Aligned_cols=42  Identities=29%  Similarity=0.332  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||||||||+++|  +++.++..|.|+
T Consensus        22 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   63 (218)
T cd03266          22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRML--AGLLEPDAGFAT   63 (218)
T ss_pred             cceEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCcCCCCceEE
Confidence            467899999999999999999999999999  778888888764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.68  E-value=1.6e-08  Score=79.33  Aligned_cols=42  Identities=24%  Similarity=0.465  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||+|||||+++|  .++.++..|.|.
T Consensus        27 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i--~Gl~~p~~G~i~   68 (228)
T PRK10584         27 TGVELVVKRGETIALIGESGSGKSTLLAIL--AGLDDGSSGEVS   68 (228)
T ss_pred             eccEEEEcCCCEEEEECCCCCCHHHHHHHH--HcCCCCCCeeEE
Confidence            467899999999999999999999999999  777777888764

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.68  E-value=1.9e-08  Score=76.89  Aligned_cols=42  Identities=31%  Similarity=0.393  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  +++.++..|.++
T Consensus        17 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   58 (182)
T cd03215          17 RDVSFEVRAGEIVGIAGLVGNGQTELAEAL--FGLRPPASGEIT   58 (182)
T ss_pred             cceEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            457899999999999999999999999999  777788888765

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.67  E-value=1.7e-08  Score=78.96  Aligned_cols=42  Identities=24%  Similarity=0.369  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||+|||||+++|  .+..++..|.|+
T Consensus        19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   60 (222)
T PRK10908         19 QGVTFHMRPGEMAFLTGHSGAGKSTLLKLI--CGIERPSAGKIW   60 (222)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  777788888765

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.67  E-value=2.1e-08  Score=77.84  Aligned_cols=42  Identities=26%  Similarity=0.394  Sum_probs=38.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||+|||||+++|  .+..++..|.|.
T Consensus        18 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~p~~G~v~   59 (204)
T PRK13538         18 SGLSFTLNAGELVQIEGPNGAGKTSLLRIL--AGLARPDAGEVL   59 (204)
T ss_pred             ecceEEECCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            468899999999999999999999999999  778888888775

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=1.5e-08  Score=79.96  Aligned_cols=42  Identities=24%  Similarity=0.351  Sum_probs=37.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  .++.++..|.|+
T Consensus        26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   67 (233)
T PRK11629         26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLL--GGLDTPTSGDVI   67 (233)
T ss_pred             EeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence            467899999999999999999999999999  777777788664

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.67  E-value=1.8e-08  Score=76.81  Aligned_cols=42  Identities=26%  Similarity=0.458  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  .+..++..|.|.
T Consensus        17 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   58 (178)
T cd03229          17 NDVSLNIEAGEIVALLGPSGSGKSTLLRCI--AGLEEPDSGSIL   58 (178)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            457899999999999999999999999999  777788888765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=1.8e-08  Score=79.76  Aligned_cols=42  Identities=26%  Similarity=0.399  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  ++..++..|.|+
T Consensus        20 ~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~   61 (241)
T PRK10895         20 EDVSLTVNSGEIVGLLGPNGAGKTTTFYMV--VGIVPRDAGNII   61 (241)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            467899999999999999999999999999  777778888765

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.67  E-value=1.8e-08  Score=77.93  Aligned_cols=42  Identities=26%  Similarity=0.354  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||||||||+++|  .|+.++..|.++
T Consensus        18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i--~G~~~~~~G~v~   59 (200)
T PRK13540         18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLI--AGLLNPEKGEIL   59 (200)
T ss_pred             eeeeEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCeeEE
Confidence            467899999999999999999999999999  777788888664

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.67  E-value=2e-08  Score=78.24  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||||||||+++|  .+..++..|.|+
T Consensus        19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   60 (207)
T PRK13539         19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLI--AGLLPPAAGTIK   60 (207)
T ss_pred             eceEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            467899999999999999999999999999  777777888775

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.67  E-value=2.1e-08  Score=79.38  Aligned_cols=41  Identities=22%  Similarity=0.549  Sum_probs=36.9

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.+.++.+++|+|+||+|||||+++|  .+..++..|.|.
T Consensus         3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   43 (230)
T TIGR01184         3 GVNLTIQQGEFISLIGHSGCGKSTLLNLI--SGLAQPTSGGVI   43 (230)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            46889999999999999999999999999  777788888775

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=1.8e-08  Score=81.20  Aligned_cols=42  Identities=29%  Similarity=0.490  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+|||||||||++|  .+..++..|.|+
T Consensus        18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   59 (255)
T PRK11248         18 EDINLTLESGELLVVLGPSGCGKTTLLNLI--AGFVPYQHGSIT   59 (255)
T ss_pred             eeeeEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            467899999999999999999999999999  777777888775

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.66  E-value=2e-08  Score=77.50  Aligned_cols=42  Identities=24%  Similarity=0.378  Sum_probs=37.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+||||+|||||+++|  ++..++..|.|.
T Consensus        17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   58 (198)
T TIGR01189        17 EGLSFTLNAGEALQVTGPNGIGKTTLLRIL--AGLLRPDSGEVR   58 (198)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCccEEE
Confidence            467899999999999999999999999999  777777788664

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.66  E-value=1.9e-08  Score=79.66  Aligned_cols=42  Identities=29%  Similarity=0.430  Sum_probs=37.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .++.++..|.|.
T Consensus        19 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   60 (239)
T cd03296          19 DDVSLDIPSGELVALLGPSGSGKTTLLRLI--AGLERPDSGTIL   60 (239)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  777777778664

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.66  E-value=1.8e-08  Score=83.06  Aligned_cols=42  Identities=21%  Similarity=0.319  Sum_probs=38.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+||||+|||||+++|  +|+.++..|.|.
T Consensus        10 ~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l--~Gl~~p~~G~i~   51 (302)
T TIGR01188        10 DGVNFKVREGEVFGFLGPNGAGKTTTIRML--TTLLRPTSGTAR   51 (302)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  888888888775

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.66  E-value=2.2e-08  Score=78.29  Aligned_cols=43  Identities=26%  Similarity=0.314  Sum_probs=38.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++++++|+|+||+|||||+++|  .++.++..|.|+-
T Consensus        25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i--~G~~~~~~G~i~~   67 (224)
T TIGR02324        25 KNVSLTVNAGECVALSGPSGAGKSTLLKSL--YANYLPDSGRILV   67 (224)
T ss_pred             ecceEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCeEEE
Confidence            468899999999999999999999999999  7777778887754

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2

Probab=98.66  E-value=9.7e-09  Score=65.42  Aligned_cols=50  Identities=18%  Similarity=0.199  Sum_probs=36.7

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHh-cCceeeecCCCcccCcHHHHHHHHHHhCCe
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMY-VDNSVNYDRPSSVIYDFQVIIDIIQKSGMK   53 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~-~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~   53 (139)
                      |||.|||+.+|+++.+||+.|+. +|.. ..+.++ .||++ .++.|+++||++
T Consensus         4 i~V~elAk~l~v~~~~ii~~l~~~~Gi~-~~~~~~-~ld~e-~~~~i~~~~~~k   54 (54)
T PF04760_consen    4 IRVSELAKELGVPSKEIIKKLFKELGIM-VKSINS-SLDEE-EAELIAEEFGVK   54 (54)
T ss_dssp             E-TTHHHHHHSSSHHHHHHHH-HHHTS----SSSS--EETT-GGGHHHHHH---
T ss_pred             eEHHHHHHHHCcCHHHHHHHHHHhCCcC-cCCCCC-cCCHH-HHHHHHHHhCcC
Confidence            58999999999999999999977 8843 356666 89965 999999999974

It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.66  E-value=2.4e-08  Score=75.63  Aligned_cols=43  Identities=26%  Similarity=0.261  Sum_probs=38.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  .+..++..|.|+-
T Consensus        18 ~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~~   60 (166)
T cd03223          18 KDLSFEIKPGDRLLITGPSGTGKSSLFRAL--AGLWPWGSGRIGM   60 (166)
T ss_pred             ecCeEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEEE
Confidence            467899999999999999999999999999  7788888887754

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.66  E-value=1.6e-08  Score=79.21  Aligned_cols=42  Identities=24%  Similarity=0.374  Sum_probs=36.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCc-----ccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVV-----KSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~-----~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  .++.     ++..|.|+
T Consensus        17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~~~~~~G~i~   63 (227)
T cd03260          17 KDISLDIPKGEITALIGPSGCGKSTLLRLL--NRLNDLIPGAPDEGEVL   63 (227)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HhhcccccCCCCCeEEE
Confidence            467899999999999999999999999999  7777     67778664

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.66  E-value=2.3e-08  Score=78.27  Aligned_cols=43  Identities=30%  Similarity=0.371  Sum_probs=38.2

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++.+++|+|+||+||||||++|  ++..++..|.|.
T Consensus        19 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   61 (229)
T cd03254          19 LKDINFSIKPGETVAIVGPTGAGKTTLINLL--MRFYDPQKGQIL   61 (229)
T ss_pred             ccceEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCcCCCCCEEE
Confidence            3467899999999999999999999999999  777888888775

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.65  E-value=2.3e-08  Score=78.83  Aligned_cols=43  Identities=21%  Similarity=0.278  Sum_probs=38.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  +|..++..|.|+-
T Consensus        20 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i--~G~~~~~~G~i~~   62 (238)
T cd03249          20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLL--ERFYDPTSGEILL   62 (238)
T ss_pred             eceEEEecCCCEEEEEeCCCCCHHHHHHHH--hccCCCCCCEEEE
Confidence            467899999999999999999999999999  7777888887753

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.65  E-value=2.4e-08  Score=77.77  Aligned_cols=43  Identities=30%  Similarity=0.454  Sum_probs=37.9

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+||+|||||+++|  .+..++..|.|+
T Consensus        20 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~   62 (220)
T cd03245          20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLL--AGLYKPTSGSVL   62 (220)
T ss_pred             ccceEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCcCCCCCeEE
Confidence            3467899999999999999999999999999  777777888764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.65  E-value=2.1e-08  Score=79.32  Aligned_cols=42  Identities=29%  Similarity=0.410  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  +|..++..|.|.
T Consensus        18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~p~~G~i~   59 (236)
T TIGR03864        18 DDVSFTVRPGEFVALLGPNGAGKSTLFSLL--TRLYVAQEGQIS   59 (236)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCcCCCceEEE
Confidence            467899999999999999999999999999  777788888765

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.65  E-value=2.4e-08  Score=77.42  Aligned_cols=41  Identities=20%  Similarity=0.354  Sum_probs=36.9

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.+.++++++|+|+||+|||||+++|  +++.++..|.|+
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~gl~~~~~G~i~   56 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLI--AGFETPQSGRVL   56 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            67899999999999999999999999999  777777788664

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.65  E-value=2.5e-08  Score=77.13  Aligned_cols=43  Identities=26%  Similarity=0.421  Sum_probs=38.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+|++|+|||||+++|  .++.++..|.|.-
T Consensus        22 ~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i--~G~~~~~~G~i~~   64 (204)
T cd03250          22 KDINLEVPKGELVAIVGPVGSGKSSLLSAL--LGELEKLSGSVSV   64 (204)
T ss_pred             eeeeEEECCCCEEEEECCCCCCHHHHHHHH--hCcCCCCCCeEEE
Confidence            468899999999999999999999999999  8888888897754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.65  E-value=2.8e-08  Score=77.11  Aligned_cols=42  Identities=24%  Similarity=0.295  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  .+..++..|.|.
T Consensus        17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   58 (201)
T cd03231          17 SGLSFTLAAGEALQVTGPNGSGKTTLLRIL--AGLSPPLAGRVL   58 (201)
T ss_pred             ccceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            468899999999999999999999999999  777777888764

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.65  E-value=2.4e-08  Score=75.78  Aligned_cols=42  Identities=26%  Similarity=0.457  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  ++..++..|.|+
T Consensus        17 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l--~G~~~~~~G~i~   58 (173)
T cd03230          17 DDISLTVEKGEIYGLLGPNGAGKTTLIKII--LGLLKPDSGEIK   58 (173)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence            467899999999999999999999999999  777777788664

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.65  E-value=2.4e-08  Score=78.68  Aligned_cols=43  Identities=23%  Similarity=0.309  Sum_probs=37.5

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++++++|+|+||+|||||+++|  .++.++..|.|.
T Consensus        23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   65 (225)
T PRK10247         23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIV--ASLISPTSGTLL   65 (225)
T ss_pred             eeccEEEEcCCCEEEEECCCCCCHHHHHHHH--hcccCCCCCeEE
Confidence            3468899999999999999999999999999  677777778664

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.64  E-value=2.4e-08  Score=75.50  Aligned_cols=42  Identities=29%  Similarity=0.458  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++++++|+|+||+|||||+++|  .+..++..|.+.
T Consensus        17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i--~G~~~~~~G~v~   58 (163)
T cd03216          17 DGVSLSVRRGEVHALLGENGAGKSTLMKIL--SGLYKPDSGEIL   58 (163)
T ss_pred             eeeEEEEeCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence            457899999999999999999999999999  778888888765

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.64  E-value=2.1e-08  Score=76.10  Aligned_cols=42  Identities=19%  Similarity=0.336  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|++|+||||||++|  ++..++..|.|+
T Consensus        19 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l--~G~~~~~~G~i~   60 (173)
T cd03246          19 RNVSFSIEPGESLAIIGPSGSGKSTLARLI--LGLLRPTSGRVR   60 (173)
T ss_pred             eeeEEEECCCCEEEEECCCCCCHHHHHHHH--HhccCCCCCeEE
Confidence            457899999999999999999999999999  777788888775

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.64  E-value=2.4e-08  Score=78.44  Aligned_cols=43  Identities=23%  Similarity=0.323  Sum_probs=38.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  +++.++..|.|+-
T Consensus        19 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~~   61 (234)
T cd03251          19 RDISLDIPAGETVALVGPSGSGKSTLVNLI--PRFYDVDSGRILI   61 (234)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hccccCCCCEEEE
Confidence            467899999999999999999999999999  7777888887753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=2.6e-08  Score=80.65  Aligned_cols=43  Identities=21%  Similarity=0.370  Sum_probs=38.1

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+||+||||||++|  .++.++..|.|.
T Consensus        17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   59 (271)
T PRK13638         17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNL--SGLLRPQKGAVL   59 (271)
T ss_pred             ccceEEEEcCCCEEEEECCCCCCHHHHHHHH--cCCCCCCccEEE
Confidence            3468899999999999999999999999999  778888888764

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.64  E-value=2.3e-08  Score=77.60  Aligned_cols=41  Identities=24%  Similarity=0.348  Sum_probs=36.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++ +++|+|+||+|||||+++|  .++.++..|.|.
T Consensus        17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   57 (211)
T cd03264          17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRIL--ATLTPPSSGTIR   57 (211)
T ss_pred             cceeEEEcCC-cEEEECCCCCCHHHHHHHH--hCCCCCCccEEE
Confidence            4678899999 9999999999999999999  777788888765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.64  E-value=2.6e-08  Score=75.41  Aligned_cols=43  Identities=33%  Similarity=0.378  Sum_probs=38.1

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++.+++|+|++|+|||||+++|  +++.++..|.++
T Consensus        18 l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i--~G~~~~~~G~i~   60 (171)
T cd03228          18 LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLL--LRLYDPTSGEIL   60 (171)
T ss_pred             ccceEEEEcCCCEEEEECCCCCCHHHHHHHH--HcCCCCCCCEEE
Confidence            3467899999999999999999999999999  777888888764

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.64  E-value=2.4e-08  Score=79.05  Aligned_cols=43  Identities=19%  Similarity=0.269  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++++++|+|+||+|||||+++|  +|+.++..|.|+-
T Consensus        19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~~   61 (242)
T PRK11124         19 FDITLDCPQGETLVLLGPSGAGKSSLLRVL--NLLEMPRSGTLNI   61 (242)
T ss_pred             eeeeeEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEEE
Confidence            467899999999999999999999999999  7777778887753

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.64  E-value=2.5e-08  Score=78.92  Aligned_cols=42  Identities=24%  Similarity=0.381  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||+|||||+++|  .++.++..|.|.
T Consensus        18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~   59 (240)
T PRK09493         18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCI--NKLEEITSGDLI   59 (240)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  777777788664

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.64  E-value=2.4e-08  Score=79.24  Aligned_cols=42  Identities=17%  Similarity=0.353  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +++.++..|.|.
T Consensus        18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   59 (242)
T cd03295          18 NNLNLEIAKGEFLVLIGPSGSGKTTTMKMI--NRLIEPTSGEIF   59 (242)
T ss_pred             eeeEEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEE
Confidence            467899999999999999999999999999  777777888764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.63  E-value=2.7e-08  Score=79.10  Aligned_cols=42  Identities=29%  Similarity=0.430  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +++.++..|.|+
T Consensus        20 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   61 (241)
T PRK14250         20 KDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSIL   61 (241)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            467899999999999999999999999999  777788888765

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.63  E-value=2.7e-08  Score=78.63  Aligned_cols=42  Identities=26%  Similarity=0.429  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+||||||++|  ++..++..|.|+
T Consensus        19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~p~~G~i~   60 (242)
T TIGR03411        19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVI--TGKTRPDEGSVL   60 (242)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCCeEE
Confidence            467899999999999999999999999999  777777888665

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.63  E-value=2.9e-08  Score=75.79  Aligned_cols=42  Identities=36%  Similarity=0.498  Sum_probs=38.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .++.++..|.|+
T Consensus        16 ~~~~~~i~~G~~~~l~G~nGsGKStLl~~i--~G~~~~~~G~v~   57 (180)
T cd03214          16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTL--AGLLKPSSGEIL   57 (180)
T ss_pred             eeeEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            467899999999999999999999999999  788888888775

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.63  E-value=2.5e-08  Score=80.96  Aligned_cols=42  Identities=21%  Similarity=0.341  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||||||||+++|  .++.++..|.|+
T Consensus        29 ~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l--~Gl~~p~~G~i~   70 (257)
T PRK11247         29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLL--AGLETPSAGELL   70 (257)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCeEEE
Confidence            467899999999999999999999999999  777788888775

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.63  E-value=3e-08  Score=78.73  Aligned_cols=43  Identities=33%  Similarity=0.386  Sum_probs=37.4

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+||+|||||+++|  .|..++..|.|.
T Consensus        19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   61 (250)
T PRK11264         19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCI--NLLEQPEAGTIR   61 (250)
T ss_pred             eccceEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCeEEE
Confidence            3467899999999999999999999999999  677777778664

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.63  E-value=2.9e-08  Score=78.28  Aligned_cols=43  Identities=28%  Similarity=0.339  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  +|+.++..|.|+-
T Consensus        19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~~   61 (237)
T cd03252          19 DNISLRIKPGEVVGIVGRSGSGKSTLTKLI--QRFYVPENGRVLV   61 (237)
T ss_pred             eceEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCcCCCCCEEEE
Confidence            467899999999999999999999999999  7777777887653

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.63  E-value=2.7e-08  Score=82.14  Aligned_cols=43  Identities=23%  Similarity=0.397  Sum_probs=38.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      ++.+++++++++++|||+||+||||||+.|  .++.+++.|.|.-
T Consensus        25 d~v~l~V~~Gei~~iiGgSGsGKStlLr~I--~Gll~P~~GeI~i   67 (263)
T COG1127          25 DGVDLDVPRGEILAILGGSGSGKSTLLRLI--LGLLRPDKGEILI   67 (263)
T ss_pred             cCceeeecCCcEEEEECCCCcCHHHHHHHH--hccCCCCCCeEEE
Confidence            468899999999999999999999999999  8888888887743

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=2.8e-08  Score=78.52  Aligned_cols=42  Identities=33%  Similarity=0.455  Sum_probs=37.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||+|||||+++|  +++.++..|.|.
T Consensus        22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~p~~G~i~   63 (237)
T PRK11614         22 HEVSLHINQGEIVTLIGANGAGKTTLLGTL--CGDPRATSGRIV   63 (237)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--cCCCCCCCceEE
Confidence            467899999999999999999999999999  778888888764

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.63  E-value=2.5e-08  Score=82.69  Aligned_cols=44  Identities=27%  Similarity=0.337  Sum_probs=39.3

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      -.+.++.++++.+++++||||+|||||+++|  +++..+..|.|.-
T Consensus        21 l~~vs~~i~~Gei~gllG~NGAGKTTllk~l--~gl~~p~~G~i~i   64 (293)
T COG1131          21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKIL--AGLLKPTSGEILV   64 (293)
T ss_pred             EeceeEEEcCCeEEEEECCCCCCHHHHHHHH--hCCcCCCceEEEE
Confidence            3468999999999999999999999999999  8888888887654

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.63  E-value=3e-08  Score=78.98  Aligned_cols=42  Identities=31%  Similarity=0.397  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  +++.++..|.|+
T Consensus        20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   61 (253)
T TIGR02323        20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCL--AGRLAPDHGTAT   61 (253)
T ss_pred             ecceEEEeCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            467899999999999999999999999999  777777778665

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.62  E-value=3.3e-08  Score=85.23  Aligned_cols=81  Identities=17%  Similarity=0.277  Sum_probs=58.3

Q ss_pred             HHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeeeCCCCccccCCCCCcccCCCCCCCCc
Q psy4669           3 LKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSV   82 (139)
Q Consensus         3 v~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   82 (139)
                      |+.|-+.+|-++...++.+ ..|           .+.+    .+.++||....+                     .+.++
T Consensus         3 ~~~~~k~fg~~~~~~~~~~-~~g-----------~~~~----~~~~~~g~~~~l---------------------~~vsf   45 (382)
T TIGR03415         3 FKNVDVVFGDQPAEALALL-DQG-----------KTRE----EILDETGLVVGV---------------------ANASL   45 (382)
T ss_pred             EEeeEEeeCCCHHHHHHHH-HcC-----------CCHH----HHHHhhCCEEEE---------------------EeeEE
Confidence            4445556677777775544 454           1112    467778765432                     24678


Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .++++.+++|||+||||||||+++|  .++.++..|.|+-
T Consensus        46 ~i~~Gei~~I~G~nGsGKSTLlr~L--~Gl~~p~~G~I~i   83 (382)
T TIGR03415        46 DIEEGEICVLMGLSGSGKSSLLRAV--NGLNPVSRGSVLV   83 (382)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCCcEEEE
Confidence            9999999999999999999999999  7778888887643

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.62  E-value=3.1e-08  Score=80.18  Aligned_cols=42  Identities=21%  Similarity=0.378  Sum_probs=38.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+|||||||||++|  +++.++..|.|+
T Consensus        30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l--~Gl~~p~~G~i~   71 (267)
T PRK15112         30 KPLSFTLREGQTLAIIGENGSGKSTLAKML--AGMIEPTSGELL   71 (267)
T ss_pred             eeeeEEecCCCEEEEEcCCCCCHHHHHHHH--hCCCCCCCCEEE
Confidence            467899999999999999999999999999  788888888775

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.62  E-value=3.4e-08  Score=76.53  Aligned_cols=43  Identities=28%  Similarity=0.346  Sum_probs=38.2

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++.+++|+|++|+|||||+++|  +++.++..|.|+
T Consensus        24 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   66 (207)
T cd03369          24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILAL--FRFLEAEEGKIE   66 (207)
T ss_pred             ccCceEEECCCCEEEEECCCCCCHHHHHHHH--hcccCCCCCeEE
Confidence            3467899999999999999999999999999  777788888765

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.62  E-value=3e-08  Score=77.37  Aligned_cols=43  Identities=19%  Similarity=0.315  Sum_probs=37.0

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++++++|+|+||+||||||++|  .++.++..|.|.
T Consensus        17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~   59 (218)
T cd03290          17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAI--LGEMQTLEGKVH   59 (218)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hccCCCCCCeEE
Confidence            3467899999999999999999999999999  677777777654

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.62  E-value=3.1e-08  Score=78.84  Aligned_cols=43  Identities=21%  Similarity=0.296  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc-----cccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE-----FGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e-----~G~Itq  122 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  +|+.++.     .|.|+-
T Consensus        18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~p~~~~~~~G~i~~   65 (247)
T TIGR00972        18 KNINLDIPKNQVTALIGPSGCGKSTLLRSL--NRMNDLVPGVRIEGKVLF   65 (247)
T ss_pred             cceeEEECCCCEEEEECCCCCCHHHHHHHH--hccCCCCcCCCCceEEEE
Confidence            467899999999999999999999999999  7777665     787753

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.62  E-value=3e-08  Score=73.77  Aligned_cols=43  Identities=23%  Similarity=0.337  Sum_probs=38.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  .+..++..|.|+-
T Consensus        17 ~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l--~G~~~~~~G~i~~   59 (144)
T cd03221          17 KDISLTINPGDRIGLVGRNGAGKSTLLKLI--AGELEPDEGIVTW   59 (144)
T ss_pred             EeeEEEECCCCEEEEECCCCCCHHHHHHHH--cCCCCCCceEEEE
Confidence            357899999999999999999999999999  8888888998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.62  E-value=3.6e-08  Score=79.55  Aligned_cols=43  Identities=23%  Similarity=0.347  Sum_probs=37.9

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++++++|+|+||+||||||++|  +++.++..|.|+
T Consensus        27 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   69 (265)
T TIGR02769        27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLL--LGLEKPAQGTVS   69 (265)
T ss_pred             eeCceeEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            3468899999999999999999999999999  777777788664

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.62  E-value=3.5e-08  Score=77.20  Aligned_cols=43  Identities=26%  Similarity=0.324  Sum_probs=38.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  ++..++..|.|+-
T Consensus        28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~~   70 (214)
T PRK13543         28 GPLDFHVDAGEALLVQGDNGAGKTTLLRVL--AGLLHVESGQIQI   70 (214)
T ss_pred             ecceEEECCCCEEEEEcCCCCCHHHHHHHH--hCCCCCCCeeEEE
Confidence            467899999999999999999999999999  7788888887643

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=2.9e-08  Score=80.61  Aligned_cols=42  Identities=19%  Similarity=0.393  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+||||||++|  +++.++..|.|.
T Consensus        24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i--~Gl~~p~~G~i~   65 (280)
T PRK13649         24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLL--NGLHVPTQGSVR   65 (280)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  777777788764

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.61  E-value=3.1e-08  Score=79.01  Aligned_cols=42  Identities=21%  Similarity=0.298  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +++..+..|.|+
T Consensus        17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   58 (252)
T TIGR03005        17 DGLNFSVAAGEKVALIGPSGSGKSTILRIL--MTLEPIDEGQIQ   58 (252)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  777778888764

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=2.9e-08  Score=81.26  Aligned_cols=43  Identities=23%  Similarity=0.418  Sum_probs=38.3

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+||||||||+++|  .++.++..|.|+
T Consensus        23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L--~Gl~~p~~G~i~   65 (286)
T PRK13646         23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNI--NALLKPTTGTVT   65 (286)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence            3468899999999999999999999999999  778888888664

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.61  E-value=3.4e-08  Score=78.46  Aligned_cols=42  Identities=24%  Similarity=0.386  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+||||||++|  +++.++..|.|.
T Consensus        38 ~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i--~Gl~~p~~G~i~   79 (236)
T cd03267          38 KGISFTIEKGEIVGFIGPNGAGKTTTLKIL--SGLLQPTSGEVR   79 (236)
T ss_pred             eceeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCcCCCceEEE
Confidence            467899999999999999999999999999  777777788664

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.61  E-value=3e-08  Score=76.41  Aligned_cols=41  Identities=22%  Similarity=0.345  Sum_probs=36.9

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .++.++++++++|+|+||||||||+++|  .++.++..|.+.-
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~~   59 (195)
T PRK13541         19 LSITFLPSAITYIKGANGCGKSSLLRMI--AGIMQPSSGNIYY   59 (195)
T ss_pred             EEEEEcCCcEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEEE
Confidence            6789999999999999999999999999  7777888887763

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.61  E-value=3e-08  Score=75.43  Aligned_cols=42  Identities=33%  Similarity=0.493  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|++|+|||||+++|  .+..++..|.|.
T Consensus        19 ~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l--~G~~~~~~G~i~   60 (178)
T cd03247          19 KNLSLELKQGEKIALLGRSGSGKSTLLQLL--TGDLKPQQGEIT   60 (178)
T ss_pred             EEEEEEEcCCCEEEEECCCCCCHHHHHHHH--hccCCCCCCEEE
Confidence            467899999999999999999999999999  777888888764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.61  E-value=3.3e-08  Score=81.52  Aligned_cols=42  Identities=26%  Similarity=0.393  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+||||+|||||+++|  +++.++..|.|+
T Consensus        21 ~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l--~Gl~~p~~G~i~   62 (303)
T TIGR01288        21 NDLSFTIARGECFGLLGPNGAGKSTIARML--LGMISPDRGKIT   62 (303)
T ss_pred             cceeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            468899999999999999999999999999  777788888775

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=3.1e-08  Score=81.01  Aligned_cols=42  Identities=24%  Similarity=0.436  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  ++..++..|.|+
T Consensus        28 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   69 (289)
T PRK13645         28 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLT--NGLIISETGQTI   69 (289)
T ss_pred             eeeEEEEeCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEE
Confidence            467899999999999999999999999999  777778888764

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.61  E-value=3.4e-08  Score=77.68  Aligned_cols=43  Identities=28%  Similarity=0.305  Sum_probs=38.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .|+.++..|.|.-
T Consensus        18 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i--~Gl~~~~~G~v~~   60 (236)
T cd03253          18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLL--FRFYDVSSGSILI   60 (236)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcccCCCCCEEEE
Confidence            467899999999999999999999999999  7788888887753

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.61  E-value=3.3e-08  Score=80.21  Aligned_cols=42  Identities=26%  Similarity=0.440  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +|+.++..|.|+
T Consensus        41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L--~Gl~~p~~G~i~   82 (269)
T cd03294          41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCI--NRLIEPTSGKVL   82 (269)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCeEEE
Confidence            357899999999999999999999999999  777888888764

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=2.9e-08  Score=81.45  Aligned_cols=43  Identities=26%  Similarity=0.465  Sum_probs=37.9

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.++++.+.+|.+++|+|+||||||||+++|  .|+.++..|.|+
T Consensus        23 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l--~Gl~~p~~G~i~   65 (287)
T PRK13637         23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHL--NGLLKPTSGKII   65 (287)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCccEEE
Confidence            3468899999999999999999999999999  778888888663

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.61  E-value=3e-08  Score=80.46  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||+|||||+++|  +++.++..|.|+
T Consensus        24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   65 (272)
T PRK15056         24 RDASFTVPGGSIAALVGVNGSGKSTLFKAL--MGFVRLASGKIS   65 (272)
T ss_pred             EeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  777777778764

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=3e-08  Score=84.31  Aligned_cols=42  Identities=19%  Similarity=0.264  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|||||||||||++|  +|+.++..|.|.
T Consensus        21 ~~vsl~i~~Ge~~~llG~sGsGKSTLLr~i--aGl~~p~~G~I~   62 (356)
T PRK11650         21 KGIDLDVADGEFIVLVGPSGCGKSTLLRMV--AGLERITSGEIW   62 (356)
T ss_pred             eeeeEEEcCCCEEEEECCCCCcHHHHHHHH--HCCCCCCceEEE
Confidence            367899999999999999999999999999  777788888765

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.61  E-value=3.7e-08  Score=76.74  Aligned_cols=43  Identities=30%  Similarity=0.339  Sum_probs=38.1

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++.+++|+|+||+|||||+++|  ++..++..|.|.
T Consensus        20 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   62 (221)
T cd03244          20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLAL--FRLVELSSGSIL   62 (221)
T ss_pred             ccceEEEECCCCEEEEECCCCCCHHHHHHHH--HcCCCCCCCEEE
Confidence            3468899999999999999999999999999  677778888775

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.61  E-value=2.3e-08  Score=95.49  Aligned_cols=42  Identities=50%  Similarity=0.540  Sum_probs=36.8

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEeee
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYH  133 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~~  133 (139)
                      ...+|++|    ||||||+||+++++..|+||||||||||+|.++.
T Consensus       466 ~~~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~  507 (1049)
T PRK14845        466 IANGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDV  507 (1049)
T ss_pred             eeeeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecc
Confidence            34456665    9999999999999999999999999999999863

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.61  E-value=3.1e-08  Score=80.23  Aligned_cols=42  Identities=31%  Similarity=0.445  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+||||||++|  +++.++..|.|.
T Consensus        24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   65 (269)
T PRK11831         24 DNISLTVPRGKITAIMGPSGIGKTTLLRLI--GGQIAPDHGEIL   65 (269)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            467899999999999999999999999999  777777888764

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.60  E-value=3.5e-08  Score=77.28  Aligned_cols=42  Identities=26%  Similarity=0.448  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+||||||++|  +|..++..|.|.
T Consensus        17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   58 (223)
T TIGR03740        17 NNISLTVPKNSVYGLLGPNGAGKSTLLKMI--TGILRPTSGEII   58 (223)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            457899999999999999999999999999  777788888764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=3.8e-08  Score=79.42  Aligned_cols=42  Identities=29%  Similarity=0.323  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  .|+.++..|.|.
T Consensus        28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   69 (265)
T PRK10575         28 HPLSLTFPAGKVTGLIGHNGSGKSTLLKML--GRHQPPSEGEIL   69 (265)
T ss_pred             eeeeeEEcCCCEEEEECCCCCCHHHHHHHH--cCCCCCCCCEEE
Confidence            467899999999999999999999999999  777788888764

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=3.2e-08  Score=78.77  Aligned_cols=42  Identities=26%  Similarity=0.419  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||+|||||+++|  .++.++..|.|.
T Consensus        22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   63 (255)
T PRK11300         22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCL--TGFYKPTGGTIL   63 (255)
T ss_pred             EeeeeEEcCCeEEEEECCCCCCHHHHHHHH--hCCcCCCcceEE
Confidence            467899999999999999999999999999  777788888665

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=3.2e-08  Score=81.05  Aligned_cols=43  Identities=28%  Similarity=0.482  Sum_probs=38.4

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.+|.+++|+|+||+||||||++|  .++.++..|.|+
T Consensus        23 l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l--~Gl~~p~~G~i~   65 (287)
T PRK13641         23 LDNISFELEEGSFVALVGHTGSGKSTLMQHF--NALLKPSSGTIT   65 (287)
T ss_pred             eeeeEEEEeCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence            3468899999999999999999999999999  788888888664

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=3.3e-08  Score=80.49  Aligned_cols=43  Identities=21%  Similarity=0.389  Sum_probs=37.9

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++.+++|+|+||+||||||++|  .|+.++..|.|+
T Consensus        18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   60 (274)
T PRK13644         18 LENINLVIKKGEYIGIIGKNGSGKSTLALHL--NGLLRPQKGKVL   60 (274)
T ss_pred             eeeeEEEEeCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEE
Confidence            3468899999999999999999999999999  777777888664

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=3.4e-08  Score=79.88  Aligned_cols=42  Identities=26%  Similarity=0.366  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+||||+|||||+++|  +|+.++..|.|+
T Consensus        26 ~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i--~Gl~~~~~G~i~   67 (269)
T PRK13648         26 KDVSFNIPKGQWTSIVGHNGSGKSTIAKLM--IGIEKVKSGEIF   67 (269)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence            467899999999999999999999999999  777777788665

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.60  E-value=3.9e-08  Score=79.18  Aligned_cols=42  Identities=31%  Similarity=0.490  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +|+.++..|.|+
T Consensus        19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~p~~G~i~   60 (258)
T PRK13548         19 DDVSLTLRPGEVVAILGPNGAGKSTLLRAL--SGELSPDSGEVR   60 (258)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCEEE
Confidence            467899999999999999999999999999  777777888764

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.60  E-value=4e-08  Score=78.71  Aligned_cols=43  Identities=21%  Similarity=0.345  Sum_probs=38.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .|+.++..|.|+-
T Consensus        18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~~   60 (256)
T TIGR03873        18 DGVDVTAPPGSLTGLLGPNGSGKSTLLRLL--AGALRPDAGTVDL   60 (256)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--cCCCCCCCCEEEE
Confidence            467899999999999999999999999999  7888888887653

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.60  E-value=4e-08  Score=76.93  Aligned_cols=43  Identities=21%  Similarity=0.312  Sum_probs=38.0

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+||+|||||+++|  ++..++..|.|.
T Consensus        30 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   72 (226)
T cd03248          30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALL--ENFYQPQGGQVL   72 (226)
T ss_pred             ccceEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCcCCCCcEEE
Confidence            3568899999999999999999999999999  777777888764

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.60  E-value=3.3e-08  Score=80.76  Aligned_cols=42  Identities=36%  Similarity=0.427  Sum_probs=38.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.+|.+++|+|+||+|||||+++|  .|..++..|.|+
T Consensus        24 ~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i--~G~~~p~~G~i~   65 (279)
T PRK13635         24 KDVSFSVYEGEWVAIVGHNGSGKSTLAKLL--NGLLLPEAGTIT   65 (279)
T ss_pred             eeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCcEEE
Confidence            468899999999999999999999999999  778888888775

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.60  E-value=4.7e-08  Score=77.06  Aligned_cols=42  Identities=26%  Similarity=0.336  Sum_probs=35.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCc--ccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVV--KSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~--~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||||||||+++|  .++.  ++..|.|.
T Consensus        17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~G~i~   60 (243)
T TIGR01978        17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTI--AGHPSYEVTSGTIL   60 (243)
T ss_pred             eccceEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCcceEE
Confidence            467899999999999999999999999999  6653  46677664

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=3.3e-08  Score=80.48  Aligned_cols=42  Identities=21%  Similarity=0.299  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  .++.++..|.|+
T Consensus        22 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   63 (274)
T PRK13647         22 KGLSLSIPEGSKTALLGPNGAGKSTLLLHL--NGIYLPQRGRVK   63 (274)
T ss_pred             eeEEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCceEEE
Confidence            467899999999999999999999999999  777788888764

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.59  E-value=4.7e-08  Score=77.14  Aligned_cols=41  Identities=22%  Similarity=0.346  Sum_probs=36.2

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc----ccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS----EFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~----e~G~It  121 (139)
                      +.++.+.++.+++|+|+||+|||||+++|  .+..++    ..|.|+
T Consensus         4 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~~~~~G~i~   48 (230)
T TIGR02770         4 DLNLSLKRGEVLALVGESGSGKSLTCLAI--LGLLPPGLTQTSGEIL   48 (230)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCccCccccEEE
Confidence            57889999999999999999999999999  777776    678764

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=3.7e-08  Score=80.41  Aligned_cols=42  Identities=29%  Similarity=0.448  Sum_probs=37.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||||||||+++|  .|+.++..|.|+
T Consensus        24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   65 (279)
T PRK13650         24 NDVSFHVKQGEWLSIIGHNGSGKSTTVRLI--DGLLEAESGQII   65 (279)
T ss_pred             eeeEEEEeCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence            468899999999999999999999999999  788888888764

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.59  E-value=4.2e-08  Score=78.64  Aligned_cols=42  Identities=31%  Similarity=0.437  Sum_probs=37.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .++.++..|.|+
T Consensus        23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   64 (258)
T PRK11701         23 RDVSFDLYPGEVLGIVGESGSGKTTLLNAL--SARLAPDAGEVH   64 (258)
T ss_pred             eeeeEEEeCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCEEE
Confidence            467899999999999999999999999999  777777777653

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.58  E-value=4.2e-08  Score=81.43  Aligned_cols=42  Identities=26%  Similarity=0.368  Sum_probs=38.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++++||||+|||||+++|  +++..+..|.++
T Consensus        24 ~~vsl~i~~Gei~gllGpNGaGKSTLl~~l--~Gl~~p~~G~v~   65 (306)
T PRK13537         24 DGLSFHVQRGECFGLLGPNGAGKTTTLRML--LGLTHPDAGSIS   65 (306)
T ss_pred             ecceEEEeCCcEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence            468899999999999999999999999999  788888888764

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.58  E-value=4.2e-08  Score=77.53  Aligned_cols=42  Identities=29%  Similarity=0.423  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  ++..++..|.|.
T Consensus        39 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~p~~G~i~   80 (224)
T cd03220          39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLL--AGIYPPDSGTVT   80 (224)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            357899999999999999999999999999  778888888775

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.58  E-value=4.5e-08  Score=76.61  Aligned_cols=42  Identities=24%  Similarity=0.340  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  +++.++..|.|.
T Consensus        22 ~~vs~~i~~G~~~~I~G~nGsGKStLl~~l--~G~~~~~~G~i~   63 (220)
T TIGR02982        22 FDINLEINPGEIVILTGPSGSGKTTLLTLI--GGLRSVQEGSLK   63 (220)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence            467899999999999999999999999999  777788888664

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=4.1e-08  Score=81.67  Aligned_cols=44  Identities=25%  Similarity=0.440  Sum_probs=39.3

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      -.+.++.+.++.+++|+|+||||||||+++|  +|+.++..|.|+-
T Consensus        23 l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L--~Gl~~p~~G~i~~   66 (305)
T PRK13651         23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHL--NALLLPDTGTIEW   66 (305)
T ss_pred             eeeeEEEEeCCCEEEEECCCCCcHHHHHHHH--hCCCCCCCcEEEE
Confidence            3468899999999999999999999999999  8888888888754

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=4.1e-08  Score=80.56  Aligned_cols=43  Identities=28%  Similarity=0.476  Sum_probs=38.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++.+++|+||||+|||||+++|  .|+.++..|.|+-
T Consensus        23 ~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~~   65 (288)
T PRK13643         23 FDIDLEVKKGSYTALIGHTGSGKSTLLQHL--NGLLQPTEGKVTV   65 (288)
T ss_pred             eeeEEEEcCCCEEEEECCCCChHHHHHHHH--hcCCCCCCcEEEE
Confidence            468999999999999999999999999999  7778888887643

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=4.9e-08  Score=77.02  Aligned_cols=41  Identities=27%  Similarity=0.434  Sum_probs=36.7

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.+.++.+++|+|+||||||||+++|  +++.++..|.|.
T Consensus        17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   57 (232)
T PRK10771         17 RFDLTVERGERVAILGPSGAGKSTLLNLI--AGFLTPASGSLT   57 (232)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            67899999999999999999999999999  777777778664

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.58  E-value=4.1e-08  Score=76.45  Aligned_cols=42  Identities=31%  Similarity=0.369  Sum_probs=36.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc---cccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK---SEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~---~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||||||||+++|  +++.+   +..|.|+
T Consensus        24 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~~~~G~i~   68 (202)
T cd03233          24 KDFSGVVKPGEMVLVLGRPGSGCSTLLKAL--ANRTEGNVSVEGDIH   68 (202)
T ss_pred             eeEEEEECCCcEEEEECCCCCCHHHHHHHh--cccCCCCCCcceEEE
Confidence            467899999999999999999999999999  77777   6778665

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=4.7e-08  Score=78.21  Aligned_cols=42  Identities=21%  Similarity=0.386  Sum_probs=37.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  ++..++..|.|.
T Consensus        19 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   60 (255)
T PRK11231         19 NDLSLSLPTGKITALIGPNGCGKSTLLKCF--ARLLTPQSGTVF   60 (255)
T ss_pred             eeeeeEEcCCcEEEEECCCCCCHHHHHHHH--hCCcCCCCcEEE
Confidence            467899999999999999999999999999  777777778664

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.57  E-value=5.1e-08  Score=75.88  Aligned_cols=40  Identities=28%  Similarity=0.379  Sum_probs=35.8

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.+.+ ++++|+|+||+|||||+++|  .++.++..|.|.
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   55 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCI--AGLEKPDGGTIV   55 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            67899999 99999999999999999999  777777788664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=4.5e-08  Score=79.37  Aligned_cols=42  Identities=31%  Similarity=0.464  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .++.++..|.|+
T Consensus        26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~I~   67 (271)
T PRK13632         26 KNVSFEINEGEYVAILGHNGSGKSTISKIL--TGLLKPQSGEIK   67 (271)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEE
Confidence            467899999999999999999999999999  777777778664

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=3.9e-08  Score=82.91  Aligned_cols=42  Identities=17%  Similarity=0.332  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||||||||+++|  +++.++..|.|+
T Consensus        22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L--~Gl~~p~~G~I~   63 (343)
T PRK11153         22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCI--NLLERPTSGRVL   63 (343)
T ss_pred             EeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  778888888764

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.57  E-value=5.4e-08  Score=75.63  Aligned_cols=40  Identities=23%  Similarity=0.186  Sum_probs=36.3

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++++++++|+|+||+|||||+++|  +++.++..|.|.-
T Consensus        19 ~~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~i~~   58 (177)
T cd03222          19 LGVVKEGEVIGIVGPNGTGKTTAVKIL--AGQLIPNGDNDEW   58 (177)
T ss_pred             CcEECCCCEEEEECCCCChHHHHHHHH--HcCCCCCCcEEEE
Confidence            368899999999999999999999999  8888888898864

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.57  E-value=5.8e-08  Score=78.37  Aligned_cols=42  Identities=26%  Similarity=0.383  Sum_probs=37.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+||||||++|  +|..++..|.|+
T Consensus        24 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~G~i~   65 (265)
T PRK10253         24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTL--SRLMTPAHGHVW   65 (265)
T ss_pred             eecceEECCCCEEEEECCCCCCHHHHHHHH--cCCCCCCCcEEE
Confidence            467899999999999999999999999999  777788888765

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.57  E-value=5.7e-08  Score=76.73  Aligned_cols=43  Identities=28%  Similarity=0.316  Sum_probs=37.7

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+||+|||||+++|  ++..++..|.|+
T Consensus        16 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l--~g~~~~~~G~i~   58 (232)
T cd03300          16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLI--AGFETPTSGEIL   58 (232)
T ss_pred             eccceEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence            3467899999999999999999999999999  777788888664

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=4.3e-08  Score=83.28  Aligned_cols=42  Identities=29%  Similarity=0.412  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|||||||||||++|  .|+.++..|.|+
T Consensus        23 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~I--aGl~~p~~G~I~   64 (351)
T PRK11432         23 DNLNLTIKQGTMVTLLGPSGCGKTTVLRLV--AGLEKPTEGQIF   64 (351)
T ss_pred             eeeEEEEcCCCEEEEECCCCCcHHHHHHHH--HCCCCCCceEEE
Confidence            357899999999999999999999999999  777888888764

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=5.1e-08  Score=79.51  Aligned_cols=43  Identities=19%  Similarity=0.343  Sum_probs=38.1

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+||+|||||+++|  +|+.++..|.|+
T Consensus        26 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   68 (280)
T PRK13633         26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHM--NALLIPSEGKVY   68 (280)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            3468899999999999999999999999999  777788888765

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.57  E-value=4e-08  Score=83.46  Aligned_cols=41  Identities=32%  Similarity=0.448  Sum_probs=36.7

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++.+.+++|+|||||||||||++|  +|+.++..|.|.
T Consensus        22 ~vs~~i~~Ge~~~l~GpsGsGKSTLLr~i--aGl~~p~~G~I~   62 (353)
T TIGR03265        22 DISLSVKKGEFVCLLGPSGCGKTTLLRII--AGLERQTAGTIY   62 (353)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHH--HCCCCCCceEEE
Confidence            57899999999999999999999999999  777777778765

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.56  E-value=4.3e-08  Score=79.08  Aligned_cols=42  Identities=29%  Similarity=0.440  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  .++.++..|.|.
T Consensus        21 ~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i--~Gl~~p~~G~i~   62 (251)
T PRK09544         21 SDVSLELKPGKILTLLGPNGAGKSTLVRVV--LGLVAPDEGVIK   62 (251)
T ss_pred             EeEEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            357899999999999999999999999999  777777888774

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=4.8e-08  Score=79.46  Aligned_cols=42  Identities=19%  Similarity=0.339  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .|+.++..|.|+
T Consensus        19 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i--~Gl~~~~~G~i~   60 (275)
T PRK13639         19 KGINFKAEKGEMVALLGPNGAGKSTLFLHF--NGILKPTSGEVL   60 (275)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCccEEE
Confidence            467899999999999999999999999999  777888888764

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.56  E-value=4.5e-08  Score=79.73  Aligned_cols=43  Identities=19%  Similarity=0.390  Sum_probs=38.1

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.+|.+++|+|+||+|||||+++|  +|..++..|.|+
T Consensus        20 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l--~Gl~~p~~G~i~   62 (277)
T PRK13652         20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHF--NGILKPTSGSVL   62 (277)
T ss_pred             eeEeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence            3468899999999999999999999999999  777788888764

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.56  E-value=4.9e-08  Score=78.23  Aligned_cols=42  Identities=26%  Similarity=0.379  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .+..++..|.|+
T Consensus        22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i--~G~~~~~~G~i~   63 (257)
T PRK10619         22 KGVSLQANAGDVISIIGSSGSGKSTFLRCI--NFLEKPSEGSIV   63 (257)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence            467899999999999999999999999999  777777788664

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.56  E-value=4.8e-08  Score=82.61  Aligned_cols=43  Identities=19%  Similarity=0.263  Sum_probs=38.4

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+++|.+++++||||+|||||+++|  +++..+..|.|.
T Consensus        57 l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L--~Gl~~p~~G~i~   99 (340)
T PRK13536         57 VNGLSFTVASGECFGLLGPNGAGKSTIARMI--LGMTSPDAGKIT   99 (340)
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HcCCCCCceEEE
Confidence            3468899999999999999999999999999  788888888765

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.56  E-value=4.7e-08  Score=83.34  Aligned_cols=42  Identities=21%  Similarity=0.310  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  +|+.++..|.|+
T Consensus        20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~i--aGl~~p~~G~I~   61 (369)
T PRK11000         20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMI--AGLEDITSGDLF   61 (369)
T ss_pred             eeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  777788888775

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=5.7e-08  Score=77.40  Aligned_cols=43  Identities=23%  Similarity=0.333  Sum_probs=36.1

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+||+|||||+++|  +++.++     ..|.|+
T Consensus        20 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~~~~~~G~i~   67 (253)
T PRK14267         20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTF--NRLLELNEEARVEGEVR   67 (253)
T ss_pred             eecceEEEcCCCEEEEECCCCCCHHHHHHHH--hccCCcccCCCCceEEE
Confidence            3467899999999999999999999999999  666654     367664

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.56  E-value=5.8e-08  Score=79.39  Aligned_cols=43  Identities=33%  Similarity=0.482  Sum_probs=39.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .++++.++++++++++|+||+||||||++|  .++.+...|.|+-
T Consensus        20 ~gvsl~v~~Geiv~llG~NGaGKTTlLkti--~Gl~~~~~G~I~~   62 (237)
T COG0410          20 RGVSLEVERGEIVALLGRNGAGKTTLLKTI--MGLVRPRSGRIIF   62 (237)
T ss_pred             eeeeeEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeeEEE
Confidence            468899999999999999999999999999  8899998998874

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.55  E-value=5.2e-08  Score=82.71  Aligned_cols=42  Identities=17%  Similarity=0.327  Sum_probs=37.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||||||||+++|  .++.++..|.|.
T Consensus        22 ~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I--~gl~~p~~G~I~   63 (343)
T TIGR02314        22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTSGSVI   63 (343)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence            468899999999999999999999999999  777777777664

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.55  E-value=6.2e-08  Score=76.14  Aligned_cols=43  Identities=35%  Similarity=0.491  Sum_probs=36.8

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc---cccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK---SEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~---~e~G~It  121 (139)
                      -.+.++.+.++++++|+|+||+|||||+++|  ++..+   +..|.|+
T Consensus        23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l--~G~~~~~~~~~G~i~   68 (226)
T cd03234          23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAI--SGRVEGGGTTSGQIL   68 (226)
T ss_pred             ccCceEEEcCCeEEEEECCCCCCHHHHHHHH--hCccCCCCCCceEEE
Confidence            3467899999999999999999999999999  66666   6677654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.55  E-value=5e-08  Score=82.92  Aligned_cols=42  Identities=29%  Similarity=0.396  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|||||||||||++|  +|+.++..|.|+
T Consensus        19 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~I--aGl~~p~~G~I~   60 (353)
T PRK10851         19 NDISLDIPSGQMVALLGPSGSGKTTLLRII--AGLEHQTSGHIR   60 (353)
T ss_pred             EEeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            357899999999999999999999999999  777788888764

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.55  E-value=4.6e-08  Score=80.74  Aligned_cols=42  Identities=19%  Similarity=0.353  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+||||+|||||+++|  .|+..+..|.|.
T Consensus        19 ~~is~~i~~Gei~~l~G~NGaGKTTLl~~l--~Gl~~~~~G~i~   60 (301)
T TIGR03522        19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKII--TGYLPPDSGSVQ   60 (301)
T ss_pred             EEeEEEEeCCeEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  778888888764

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.55  E-value=5.2e-08  Score=83.61  Aligned_cols=42  Identities=21%  Similarity=0.376  Sum_probs=36.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|||||||||||++|  +|+.++..|.|.
T Consensus        31 ~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~I--aGl~~p~~G~I~   72 (375)
T PRK09452         31 SNLDLTINNGEFLTLLGPSGCGKTTVLRLI--AGFETPDSGRIM   72 (375)
T ss_pred             eeeEEEEeCCCEEEEECCCCCcHHHHHHHH--hCCCCCCceEEE
Confidence            357899999999999999999999999999  777777777664

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.55  E-value=7e-08  Score=74.69  Aligned_cols=43  Identities=28%  Similarity=0.275  Sum_probs=37.9

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCc--ccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVV--KSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~--~~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|++|+|||||+++|  +++.  ++..|.|.
T Consensus        25 l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i--~Gl~~~~~~~G~i~   69 (194)
T cd03213          25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNAL--AGRRTGLGVSGEVL   69 (194)
T ss_pred             eecceEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCCceEEE
Confidence            3467899999999999999999999999999  7777  77788764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.54  E-value=6.3e-08  Score=75.47  Aligned_cols=42  Identities=26%  Similarity=0.438  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .+..++..|.|.
T Consensus        15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~G~i~   56 (213)
T TIGR01277        15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLI--AGFIEPASGSIK   56 (213)
T ss_pred             eeeEEEEeCCcEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence            367899999999999999999999999999  777888888664

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=6e-08  Score=78.97  Aligned_cols=42  Identities=19%  Similarity=0.262  Sum_probs=37.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.+|++++|+|+||+|||||+++|  +|..++..|.|+
T Consensus        24 ~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   65 (277)
T PRK13642         24 NGVSFSITKGEWVSIIGQNGSGKSTTARLI--DGLFEEFEGKVK   65 (277)
T ss_pred             eeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCCEEE
Confidence            468899999999999999999999999999  777788888764

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.54  E-value=5.2e-08  Score=83.42  Aligned_cols=42  Identities=24%  Similarity=0.420  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++++++|+|+|||||||||++|  .++.++..|.|.
T Consensus        10 ~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L--~Gl~~p~~G~I~   51 (363)
T TIGR01186        10 NDADLAIAKGEIFVIMGLSGSGKSTTVRML--NRLIEPTAGQIF   51 (363)
T ss_pred             EeeEEEEcCCCEEEEECCCCChHHHHHHHH--hCCCCCCceEEE
Confidence            467899999999999999999999999999  777888888664

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.54  E-value=5.2e-08  Score=79.74  Aligned_cols=33  Identities=27%  Similarity=0.399  Sum_probs=30.4

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -.++++.++++.|+++||||||||||||+++..
T Consensus        23 L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             hccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence            457899999999999999999999999999964

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=6.7e-08  Score=79.02  Aligned_cols=42  Identities=29%  Similarity=0.460  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.+|.+++|+|+||+|||||+++|  +++.++..|.|+
T Consensus        23 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i--~Gl~~p~~G~i~   64 (283)
T PRK13636         23 KGININIKKGEVTAILGGNGAGKSTLFQNL--NGILKPSSGRIL   64 (283)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCccEEE
Confidence            467899999999999999999999999999  778888888764

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=5.9e-08  Score=79.71  Aligned_cols=43  Identities=33%  Similarity=0.497  Sum_probs=37.8

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+||||||||+++|  .++.++..|.|.
T Consensus        23 L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   65 (290)
T PRK13634         23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHL--NGLLQPTSGTVT   65 (290)
T ss_pred             eeeEEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCcEEE
Confidence            3468899999999999999999999999999  777788888663

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.53  E-value=2.2e-08  Score=82.43  Aligned_cols=43  Identities=28%  Similarity=0.398  Sum_probs=40.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++++++++||||+|||||+|+|  +++.++..|.|+-
T Consensus        21 ~~Vsl~v~~Gei~~LIGPNGAGKTTlfNli--tG~~~P~~G~v~~   63 (250)
T COG0411          21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLI--TGFYKPSSGTVIF   63 (250)
T ss_pred             eceeEEEcCCeEEEEECCCCCCceeeeeee--cccccCCCceEEE
Confidence            467899999999999999999999999999  9999999998865

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.53  E-value=7.4e-08  Score=78.58  Aligned_cols=43  Identities=21%  Similarity=0.325  Sum_probs=38.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  +|+.++..|.|+-
T Consensus        41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L--~Gl~~p~~G~I~~   83 (264)
T PRK13546         41 DDISLKAYEGDVIGLVGINGSGKSTLSNII--GGSLSPTVGKVDR   83 (264)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCcCCCceEEEE
Confidence            357899999999999999999999999999  8888888887753

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.52  E-value=6.8e-08  Score=80.92  Aligned_cols=44  Identities=25%  Similarity=0.460  Sum_probs=39.0

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      -.+.++.++++.+++|+|+||||||||+++|  .++..+..|.|+-
T Consensus        42 L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L--~Gl~~p~~G~I~i   85 (320)
T PRK13631         42 LNNISYTFEKNKIYFIIGNSGSGKSTLVTHF--NGLIKSKYGTIQV   85 (320)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCeEEE
Confidence            3568899999999999999999999999999  7888888887753

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.52  E-value=6.3e-08  Score=81.92  Aligned_cols=41  Identities=20%  Similarity=0.450  Sum_probs=36.8

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.+.++++++|+|||||||||||++|  .|+.++..|.|+
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i--aGl~~p~~G~I~   56 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAI--SGLTRPQKGRIV   56 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            57899999999999999999999999999  777777888765

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.52  E-value=8.8e-08  Score=77.97  Aligned_cols=44  Identities=30%  Similarity=0.447  Sum_probs=39.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH  123 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~  123 (139)
                      ++.++.+..+..++++||||||||||||.+  +++..+..|.|+-+
T Consensus        22 e~vsL~ia~ge~vv~lGpSGcGKTTLLnl~--AGf~~P~~G~i~l~   65 (259)
T COG4525          22 EDVSLTIASGELVVVLGPSGCGKTTLLNLI--AGFVTPSRGSIQLN   65 (259)
T ss_pred             hccceeecCCCEEEEEcCCCccHHHHHHHH--hcCcCcccceEEEC
Confidence            468899999999999999999999999999  88888888887543

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.52  E-value=8.7e-08  Score=77.70  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=37.7

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+||+|||||+++|  .++.++..|.|+
T Consensus        28 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~sG~i~   70 (268)
T PRK10419         28 LNNVSLSLKSGETVALLGRSGCGKSTLARLL--VGLESPSQGNVS   70 (268)
T ss_pred             EeceeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            3468899999999999999999999999999  677777778664

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.52  E-value=8.8e-08  Score=76.49  Aligned_cols=42  Identities=19%  Similarity=0.343  Sum_probs=35.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It  121 (139)
                      .+.++.++++++++|+|+||||||||+++|  .++.++     ..|.|.
T Consensus        24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~~~~G~i~   70 (254)
T PRK14273         24 NNINIKILKNSITALIGPSGCGKSTFLRTL--NRMNDLVEGIKIEGNVI   70 (254)
T ss_pred             cceeeEEcCCCEEEEECCCCCCHHHHHHHH--hccccCCcCCCCceEEE
Confidence            468899999999999999999999999999  666554     356554

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.52  E-value=7.2e-08  Score=78.80  Aligned_cols=43  Identities=23%  Similarity=0.327  Sum_probs=36.5

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccc---ccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF---GGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~---G~It  121 (139)
                      -.+.++.++++.+++|+|+||||||||+++|  .|+.++..   |.|+
T Consensus        23 l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l--~G~~~p~~g~~G~i~   68 (282)
T PRK13640         23 LNDISFSIPRGSWTALIGHNGSGKSTISKLI--NGLLLPDDNPNSKIT   68 (282)
T ss_pred             eeeEEEEEcCCCEEEEECCCCCcHHHHHHHH--hcccCCCCCCCcEEE
Confidence            3467899999999999999999999999999  77776665   5554

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.52  E-value=9.1e-08  Score=78.77  Aligned_cols=43  Identities=30%  Similarity=0.415  Sum_probs=39.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++..++|+||||+||||||+.|  +++.++..|.+.=
T Consensus        44 ~disf~i~~Ge~vGiiG~NGaGKSTLlkli--aGi~~Pt~G~v~v   86 (249)
T COG1134          44 KDISFEIYKGERVGIIGHNGAGKSTLLKLI--AGIYKPTSGKVKV   86 (249)
T ss_pred             cCceEEEeCCCEEEEECCCCCcHHHHHHHH--hCccCCCCceEEE
Confidence            478999999999999999999999999999  9999999997643

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.52  E-value=8.8e-08  Score=78.35  Aligned_cols=37  Identities=27%  Similarity=0.400  Sum_probs=33.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE  116 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e  116 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  .++.++.
T Consensus        18 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l--aG~~~p~   54 (272)
T PRK13547         18 RDLSLRIEPGRVTALLGRNGAGKSTLLKAL--AGDLTGG   54 (272)
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCc
Confidence            467899999999999999999999999999  6766665

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.51  E-value=9.6e-08  Score=76.54  Aligned_cols=42  Identities=17%  Similarity=0.294  Sum_probs=36.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc----ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS----EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~----e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +++.++    ..|.|.
T Consensus        20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~~~~~G~i~   65 (254)
T PRK10418         20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAA--LGILPAGVRQTAGRVL   65 (254)
T ss_pred             cceEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCCcCCEEE
Confidence            467899999999999999999999999999  777666    667654

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.51  E-value=7.9e-08  Score=77.06  Aligned_cols=42  Identities=24%  Similarity=0.346  Sum_probs=35.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It  121 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  +|+..+     ..|.|+
T Consensus        21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--aGl~~~~~~~~~~G~I~   67 (258)
T PRK14241         21 EDVNLNIEPRSVTAFIGPSGCGKSTVLRTL--NRMHEVIPGARVEGEVL   67 (258)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--hccCCcccCCCcceEEE
Confidence            467899999999999999999999999999  555542     467664

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.51  E-value=6.9e-08  Score=82.83  Aligned_cols=42  Identities=26%  Similarity=0.413  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|||||||||||++|  +|+.++..|.|.
T Consensus        36 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~I--aGl~~p~~G~I~   77 (377)
T PRK11607         36 DDVSLTIYKGEIFALLGASGCGKSTLLRML--AGFEQPTAGQIM   77 (377)
T ss_pred             eeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCceEEE
Confidence            357899999999999999999999999999  777788888765

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.51  E-value=8.6e-08  Score=76.08  Aligned_cols=42  Identities=24%  Similarity=0.427  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  ++..++..|.|+
T Consensus        17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i--~G~~~~~~G~i~   58 (237)
T TIGR00968        17 DDVNLEVPTGSLVALLGPSGSGKSTLLRII--AGLEQPDSGRIR   58 (237)
T ss_pred             eeEEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence            467899999999999999999999999999  777778888764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.50  E-value=9.8e-08  Score=83.04  Aligned_cols=42  Identities=19%  Similarity=0.200  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+||||||++|  +++.++..|.|+
T Consensus        20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l--~G~~~p~~G~i~   61 (490)
T PRK10938         20 QLPSLTLNAGDSWAFVGANGSGKSALARAL--AGELPLLSGERQ   61 (490)
T ss_pred             ccceEEEcCCCEEEEECCCCCCHHHHHHHH--hccCCCCCceEE
Confidence            468899999999999999999999999999  777778888775

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.50  E-value=8.9e-08  Score=75.92  Aligned_cols=42  Identities=29%  Similarity=0.483  Sum_probs=37.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +++.++..|.++
T Consensus        16 ~~is~~i~~Ge~~~i~G~nG~GKStLl~~l--~G~~~p~~G~v~   57 (235)
T cd03299          16 KNVSLEVERGDYFVILGPTGSGKSVLLETI--AGFIKPDSGKIL   57 (235)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hCCcCCCceEEE
Confidence            467899999999999999999999999999  777777778654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.50  E-value=8.8e-08  Score=76.19  Aligned_cols=42  Identities=24%  Similarity=0.350  Sum_probs=34.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +++.++     ..|.|.
T Consensus        20 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i--~Gl~~~~~~~~~~G~i~   66 (250)
T PRK14262         20 KNVTMKIFKNQITAIIGPSGCGKTTLLRSI--NRMNDHIPGFRVEGKIY   66 (250)
T ss_pred             eeeeEeecCCCEEEEECCCCCCHHHHHHHH--hccccCCCCCCcceEEE
Confidence            467899999999999999999999999999  555542     567554

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.50  E-value=1.2e-07  Score=75.42  Aligned_cols=42  Identities=24%  Similarity=0.288  Sum_probs=35.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCC--cccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSV--VKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v--~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||||||||+++|  +++  .++..|.|+
T Consensus        24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~Gl~~~~~~~G~i~   67 (252)
T CHL00131         24 KGLNLSINKGEIHAIMGPNGSGKSTLSKVI--AGHPAYKILEGDIL   67 (252)
T ss_pred             ecceeEEcCCcEEEEECCCCCCHHHHHHHH--cCCCcCcCCCceEE
Confidence            467899999999999999999999999999  554  356677654

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.50  E-value=1.1e-07  Score=70.76  Aligned_cols=43  Identities=28%  Similarity=0.448  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++++++|+|++|+|||||+++|  .+......|.++-
T Consensus        16 ~~~~~~i~~g~~~~i~G~nGsGKStll~~l--~g~~~~~~G~i~~   58 (157)
T cd00267          16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAI--AGLLKPTSGEILI   58 (157)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCccEEEE
Confidence            356889999999999999999999999999  7777788887753

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.49  E-value=8.3e-08  Score=81.14  Aligned_cols=41  Identities=27%  Similarity=0.462  Sum_probs=36.7

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.+.++++++|+|+|||||||||++|  .++.++..|.|.
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~i--aGl~~p~~G~I~   55 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLI--AGLTRPDEGEIV   55 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            57889999999999999999999999999  777777888764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=1.1e-07  Score=75.67  Aligned_cols=42  Identities=19%  Similarity=0.351  Sum_probs=35.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  +|..++     ..|.|.
T Consensus        20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~~~~~~G~i~   66 (250)
T PRK14247         20 DGVNLEIPDNTITALMGPSGSGKSTLLRVF--NRLIELYPEARVSGEVY   66 (250)
T ss_pred             ecceeEEcCCCEEEEECCCCCCHHHHHHHH--hccCCCCCCCCCceEEE
Confidence            467899999999999999999999999999  565542     467654

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=7.8e-08  Score=83.35  Aligned_cols=41  Identities=24%  Similarity=0.461  Sum_probs=36.9

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++.+++|+|+|||||||||++|  .++.++..|.|+
T Consensus        46 ~isl~i~~Gei~~LvG~NGsGKSTLLr~I--~Gl~~p~sG~I~   86 (400)
T PRK10070         46 DASLAIEEGEIFVIMGLSGSGKSTMVRLL--NRLIEPTRGQVL   86 (400)
T ss_pred             eEEEEEcCCCEEEEECCCCchHHHHHHHH--HcCCCCCCCEEE
Confidence            46899999999999999999999999999  778888888764

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.49  E-value=9.3e-08  Score=81.64  Aligned_cols=42  Identities=31%  Similarity=0.465  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccc--ccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF--GGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~--G~It  121 (139)
                      .+.++.+.++.+++|+|||||||||||++|  +++.++..  |.|.
T Consensus        22 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~i--aGl~~p~~~~G~i~   65 (362)
T TIGR03258        22 DDLSLEIEAGELLALIGKSGCGKTTLLRAI--AGFVKAAGLTGRIA   65 (362)
T ss_pred             eeeEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCCEEEE
Confidence            467899999999999999999999999999  77778877  8764

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.49  E-value=9.7e-08  Score=76.07  Aligned_cols=32  Identities=28%  Similarity=0.438  Sum_probs=29.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.++.+.++.+++|+|+||+||||||++|.+
T Consensus        23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14242         23 HDISLEFEQNQVTALIGPSGCGKSTFLRCLNR   54 (253)
T ss_pred             cceeEEEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence            46789999999999999999999999999944

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.49  E-value=1.2e-07  Score=75.92  Aligned_cols=41  Identities=22%  Similarity=0.383  Sum_probs=34.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +++.+. .|.|+
T Consensus        13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l--~Gl~~~-~G~i~   53 (248)
T PRK03695         13 GPLSAEVRAGEILHLVGPNGAGKSTLLARM--AGLLPG-SGSIQ   53 (248)
T ss_pred             cceEEEEcCCCEEEEECCCCCCHHHHHHHH--cCCCCC-CeEEE
Confidence            467899999999999999999999999999  666554 67664

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.49  E-value=1.3e-07  Score=74.95  Aligned_cols=42  Identities=26%  Similarity=0.274  Sum_probs=35.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCc--ccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVV--KSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~--~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  ++..  ++..|.|.
T Consensus        18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~G~i~   61 (248)
T PRK09580         18 RGLNLEVRPGEVHAIMGPNGSGKSTLSATL--AGREDYEVTGGTVE   61 (248)
T ss_pred             ecceeEEcCCCEEEEECCCCCCHHHHHHHH--cCCccCCCCceEEE
Confidence            467899999999999999999999999999  6663  46677653

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.49  E-value=9.7e-08  Score=79.93  Aligned_cols=43  Identities=21%  Similarity=0.376  Sum_probs=38.3

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -++.++.++.+++++++|||||||||+|+.|  .++..+..|.|.
T Consensus        17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMI--NrLiept~G~I~   59 (309)
T COG1125          17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMI--NRLIEPTSGEIL   59 (309)
T ss_pred             eeeeeEEecCCeEEEEECCCCCcHHHHHHHH--hcccCCCCceEE
Confidence            3568999999999999999999999999999  778888888765

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.48  E-value=1.2e-07  Score=78.05  Aligned_cols=45  Identities=27%  Similarity=0.349  Sum_probs=40.2

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH  123 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~  123 (139)
                      -.++++.+.+|++++|+|+||||||||.++|  .++..+..|.|+-+
T Consensus        23 l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l--~Gl~~p~~G~I~~~   67 (252)
T COG1124          23 LNNVSLEIERGETLGIVGESGSGKSTLARLL--AGLEKPSSGSILLD   67 (252)
T ss_pred             hcceeEEecCCCEEEEEcCCCCCHHHHHHHH--hcccCCCCceEEEC
Confidence            3468999999999999999999999999999  88888888888654

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.48  E-value=1.2e-07  Score=73.13  Aligned_cols=44  Identities=32%  Similarity=0.367  Sum_probs=34.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||+||||||++|.+....++..|.|.
T Consensus        24 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~   67 (192)
T cd03232          24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEIL   67 (192)
T ss_pred             EccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Confidence            46789999999999999999999999999944222235667654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.48  E-value=1.3e-07  Score=80.57  Aligned_cols=43  Identities=28%  Similarity=0.429  Sum_probs=38.5

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH  123 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~  123 (139)
                      +.++.++.++.++++|||||||||||++|  +|+..++.|.|.-+
T Consensus        20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiI--AGLe~p~~G~I~~~   62 (345)
T COG1118          20 DISLDIKSGELVALLGPSGAGKSTLLRII--AGLETPDAGRIRLN   62 (345)
T ss_pred             cceeeecCCcEEEEECCCCCcHHHHHHHH--hCcCCCCCceEEEC
Confidence            68899999999999999999999999999  77888888877643

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.48  E-value=1.2e-07  Score=82.93  Aligned_cols=44  Identities=30%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      -.+.++.++++.+++|+|+|||||||||++|  ++..++..|.|.-
T Consensus       279 l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i--~Gl~~p~~G~I~~  322 (510)
T PRK09700        279 VRDISFSVCRGEILGFAGLVGSGRTELMNCL--FGVDKRAGGEIRL  322 (510)
T ss_pred             ccceeEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCcCCCCeEEE
Confidence            3568899999999999999999999999999  7777777787753

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.48  E-value=1.1e-07  Score=83.22  Aligned_cols=42  Identities=21%  Similarity=0.366  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+..+.+++|+|+|||||||||++|  +++.++..|.|+
T Consensus        22 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i--~Gl~~p~~G~i~   63 (510)
T PRK09700         22 KSVNLTVYPGEIHALLGENGAGKSTLMKVL--SGIHEPTKGTIT   63 (510)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--cCCcCCCccEEE
Confidence            468899999999999999999999999999  777777778764

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.48  E-value=1.5e-07  Score=75.92  Aligned_cols=39  Identities=31%  Similarity=0.463  Sum_probs=34.0

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +..+.++.+++|+|+||+|||||+++|  ++..++..|.|.
T Consensus        19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L--~G~~~p~~G~i~   57 (246)
T cd03237          19 GGSISESEVIGILGPNGIGKTTFIKML--AGVLKPDEGDIE   57 (246)
T ss_pred             cCCcCCCCEEEEECCCCCCHHHHHHHH--hCCCcCCCCeEE
Confidence            345678999999999999999999999  778888888775

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.48  E-value=1.1e-07  Score=78.36  Aligned_cols=43  Identities=30%  Similarity=0.453  Sum_probs=37.4

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -+++++.++++++|+|+|+||+||||||++|  .++..+..|.|.
T Consensus        20 L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~l--ngl~d~t~G~i~   62 (258)
T COG3638          20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSL--NGLVDPTSGEIL   62 (258)
T ss_pred             eeeEeEEeCCCcEEEEECCCCCcHHHHHHHH--hcccCCCcceEE
Confidence            4568999999999999999999999999999  667777777653

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.47  E-value=1.2e-07  Score=76.81  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=35.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  +++.+     +..|.|+
T Consensus        30 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~~~p~~G~v~   76 (269)
T PRK14259         30 KNVFCDIPRGKVTALIGPSGCGKSTVLRSL--NRMNDLIEGCSLKGRVL   76 (269)
T ss_pred             cceEEEEcCCCEEEEECCCCCCHHHHHHHH--hccccccCCCCCceEEE
Confidence            467899999999999999999999999999  55544     3566654

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.47  E-value=1.7e-07  Score=72.79  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=36.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCC--cccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSV--VKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v--~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .+.  ..+..|.|+
T Consensus        17 ~~is~~i~~Ge~~~i~G~nGsGKStLl~~l--~G~~~~~p~~G~i~   60 (200)
T cd03217          17 KGVNLTIKKGEVHALMGPNGSGKSTLAKTI--MGHPKYEVTEGEIL   60 (200)
T ss_pred             eccceEECCCcEEEEECCCCCCHHHHHHHH--hCCCcCCCCccEEE
Confidence            467899999999999999999999999999  555  356777665

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.47  E-value=1.3e-07  Score=75.43  Aligned_cols=42  Identities=19%  Similarity=0.286  Sum_probs=34.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +|+.++     ..|.|+
T Consensus        21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~G~~~~~~~~~~~G~i~   67 (251)
T PRK14270         21 NDINLPIYENKITALIGPSGCGKSTFLRCL--NRMNDLISNVKIEGEVL   67 (251)
T ss_pred             eceeEEEcCCCEEEEECCCCCCHHHHHHHH--HhccCcccCCCCccEEE
Confidence            467899999999999999999999999999  555442     567665

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.47  E-value=1.2e-07  Score=76.13  Aligned_cols=42  Identities=24%  Similarity=0.357  Sum_probs=34.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  +++..     +..|.|+
T Consensus        30 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~p~~p~~G~i~   76 (260)
T PRK10744         30 KNINLDIAKNQVTAFIGPSGCGKSTLLRTF--NRMYELYPEQRAEGEIL   76 (260)
T ss_pred             eceeEEEcCCCEEEEECCCCCCHHHHHHHH--hcccccCCCCCcceEEE
Confidence            467899999999999999999999999999  55553     3466553

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.47  E-value=1.4e-07  Score=83.11  Aligned_cols=42  Identities=19%  Similarity=0.283  Sum_probs=38.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  .+..++..|.|+
T Consensus        18 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l--~Gl~~p~~G~i~   59 (530)
T PRK15064         18 ENISVKFGGGNRYGLIGANGCGKSTFMKIL--GGDLEPSAGNVS   59 (530)
T ss_pred             eCCEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            468899999999999999999999999999  777778888875

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.47  E-value=1.2e-07  Score=82.89  Aligned_cols=42  Identities=21%  Similarity=0.401  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|||||||||||++|  .++.++..|.|+
T Consensus        21 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l--~G~~~p~~G~i~   62 (501)
T PRK10762         21 SGAALNVYPGRVMALVGENGAGKSTMMKVL--TGIYTRDAGSIL   62 (501)
T ss_pred             eeeeEEEcCCeEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            467899999999999999999999999999  777777788765

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=1.4e-07  Score=76.12  Aligned_cols=41  Identities=27%  Similarity=0.389  Sum_probs=35.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      .+.++.+.++++++|+|++|+|||||++.|  +|..++..|.|
T Consensus        27 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--aG~~~~~~G~v   67 (257)
T PRK14246         27 KDITIKIPNNSIFGIMGPSGSGKSTLLKVL--NRLIEIYDSKI   67 (257)
T ss_pred             eceEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCcCce
Confidence            467899999999999999999999999999  77777776644

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=1.6e-07  Score=74.65  Aligned_cols=37  Identities=22%  Similarity=0.324  Sum_probs=32.0

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS  115 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~  115 (139)
                      -.+.++.+.++.+++|+|+||+|||||+++|  +++.++
T Consensus        20 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~   56 (252)
T PRK14272         20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAI--NRMHDL   56 (252)
T ss_pred             eccceEEEcCCCEEEEECCCCCCHHHHHHHH--hccCCC
Confidence            3467899999999999999999999999999  665543

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=1.3e-07  Score=76.37  Aligned_cols=43  Identities=23%  Similarity=0.363  Sum_probs=34.8

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+||+|||||+++|  +|+..     +..|.|+
T Consensus        37 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~~~~G~i~   84 (268)
T PRK14248         37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSI--NRMNDLIPSARSEGEIL   84 (268)
T ss_pred             eeceEEEEcCCCEEEEECCCCCCHHHHHHHH--HhcccccCCCCCceEEE
Confidence            3467899999999999999999999999999  54432     4567553

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.46  E-value=9.7e-08  Score=77.27  Aligned_cols=42  Identities=26%  Similarity=0.351  Sum_probs=35.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+||||||++|  +|+.++     ..|.|+
T Consensus        36 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~~~~G~I~   82 (267)
T PRK14235         36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCL--NRMNDTIDGCRVTGKIT   82 (267)
T ss_pred             EEEEEEEcCCCEEEEECCCCCCHHHHHHHH--HhhcccccCCCCceEEE
Confidence            467899999999999999999999999999  555542     567665

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.46  E-value=1.4e-07  Score=77.78  Aligned_cols=44  Identities=20%  Similarity=0.331  Sum_probs=38.7

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      -.+.++.+.++.+++|+|+||+|||||+++|  .+..++..|.|+-
T Consensus        53 L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I--~Gl~~p~~G~I~i   96 (282)
T cd03291          53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLI--LGELEPSEGKIKH   96 (282)
T ss_pred             eeeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEEE
Confidence            3467899999999999999999999999999  7788888887753

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.46  E-value=1.7e-07  Score=73.85  Aligned_cols=37  Identities=22%  Similarity=0.398  Sum_probs=32.2

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++|+|+||||||||+++|  ++..++..|.|+
T Consensus         2 ~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~~G~i~   38 (223)
T TIGR03771         2 SADKGELLGLLGPNGAGKTTLLRAI--LGLIPPAKGTVK   38 (223)
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            4678999999999999999999999  777777777665

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.46  E-value=1.4e-07  Score=74.97  Aligned_cols=42  Identities=21%  Similarity=0.314  Sum_probs=34.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc--c---ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK--S---EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~--~---e~G~It  121 (139)
                      .+.++.+.++++++|+|+||||||||+++|  +++..  +   ..|.|+
T Consensus        20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~~~~~~~~~G~i~   66 (250)
T PRK14240         20 KKINLDIEENQVTALIGPSGCGKSTFLRTL--NRMNDLIPSVKIEGEVL   66 (250)
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHH--hccccccCCCCCceEEE
Confidence            467899999999999999999999999999  55433  1   456554

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.46  E-value=1.1e-07  Score=82.41  Aligned_cols=42  Identities=21%  Similarity=0.373  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+||||+||||||++|  +++.++..|.|+
T Consensus        20 ~~vs~~i~~Geiv~liGpNGaGKSTLLk~L--aGll~p~sG~I~   61 (402)
T PRK09536         20 DGVDLSVREGSLVGLVGPNGAGKTTLLRAI--NGTLTPTAGTVL   61 (402)
T ss_pred             EeeEEEECCCCEEEEECCCCchHHHHHHHH--hcCCCCCCcEEE
Confidence            357899999999999999999999999999  778888888765

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=1.4e-07  Score=75.78  Aligned_cols=42  Identities=19%  Similarity=0.337  Sum_probs=35.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .++.++     ..|.|.
T Consensus        29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~Gl~~~~~~~~~~G~i~   75 (258)
T PRK14268         29 KNVSMQIPKNSVTALIGPSGCGKSTFIRCL--NRMNDLIKNCRIEGKVS   75 (258)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCcccCCCcceEEE
Confidence            467899999999999999999999999999  555543     567654

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.45  E-value=1.2e-07  Score=76.12  Aligned_cols=42  Identities=24%  Similarity=0.223  Sum_probs=37.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|++|+|||||+++|  .++.++..|.|+
T Consensus        38 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~G~i~   79 (257)
T cd03288          38 KHVKAYIKPGQKVGICGRTGSGKSSLSLAF--FRMVDIFDGKIV   79 (257)
T ss_pred             eEEEEEEcCCCEEEEECCCCCCHHHHHHHH--HcccCCCCCeEE
Confidence            467899999999999999999999999999  777788888775

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=2.5e-07  Score=83.87  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=38.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++.+++|+|||||||||||++|  +|..++..|.|+-
T Consensus       329 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l--~G~~~p~~G~i~~  371 (638)
T PRK10636        329 DSIKLNLVPGSRIGLLGRNGAGKSTLIKLL--AGELAPVSGEIGL  371 (638)
T ss_pred             ccceEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCeEEE
Confidence            568899999999999999999999999999  7888888888764

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.45  E-value=1.6e-07  Score=75.37  Aligned_cols=42  Identities=21%  Similarity=0.370  Sum_probs=35.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc---cccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE---FGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e---~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +|+.++.   .|.|+
T Consensus        21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i--~G~~~p~~~~~G~i~   65 (262)
T PRK09984         21 HAVDLNIHHGEMVALLGPSGSGKSTLLRHL--SGLITGDKSAGSHIE   65 (262)
T ss_pred             ecceEEEcCCcEEEEECCCCCCHHHHHHHH--hccCCCCCCCceEEE
Confidence            467899999999999999999999999999  6666543   36553

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.45  E-value=1.6e-07  Score=84.87  Aligned_cols=43  Identities=23%  Similarity=0.328  Sum_probs=39.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  +|...+..|.|+-
T Consensus        20 ~~is~~i~~Ge~v~LvG~NGsGKSTLLrii--aG~~~p~~G~I~~   62 (635)
T PRK11147         20 DNAELHIEDNERVCLVGRNGAGKSTLMKIL--NGEVLLDDGRIIY   62 (635)
T ss_pred             eCcEEEECCCCEEEEECCCCCCHHHHHHHH--cCCCCCCCeEEEe
Confidence            468899999999999999999999999999  7888888898864

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.45  E-value=1.4e-07  Score=75.93  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=36.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      ..-+..++.+++++|+||||+||||||+.|  +|+..+..|.|.
T Consensus        16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLI--AGF~~P~~G~i~   57 (231)
T COG3840          16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLI--AGFETPASGEIL   57 (231)
T ss_pred             EEEEEeecCCcEEEEECCCCccHHHHHHHH--HhccCCCCceEE
Confidence            345678999999999999999999999999  778888888764

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=1.5e-07  Score=74.76  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=31.5

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      -.+.++.+.++.+++|+|+||+|||||+++|  ++..+
T Consensus        19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~   54 (249)
T PRK14253         19 LKSINLPIPARQVTALIGPSGCGKSTLLRCL--NRMND   54 (249)
T ss_pred             eecceEEecCCCEEEEECCCCCCHHHHHHHH--Hhhcc
Confidence            3468899999999999999999999999999  55544

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=1.4e-07  Score=75.17  Aligned_cols=42  Identities=19%  Similarity=0.285  Sum_probs=34.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  +|+..     +..|.|+
T Consensus        22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i--~G~~~~~~~~~~~G~i~   68 (251)
T PRK14244         22 FDINLDIYKREVTAFIGPSGCGKSTFLRCF--NRMNDFVPNCKVKGELD   68 (251)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HhhcccCCCCCcceEEE
Confidence            467899999999999999999999999999  55543     2467654

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=1.8e-07  Score=84.84  Aligned_cols=43  Identities=23%  Similarity=0.336  Sum_probs=39.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  +|...+..|.|+-
T Consensus        18 ~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL--~G~~~pd~G~I~~   60 (638)
T PRK10636         18 DNATATINPGQKVGLVGKNGCGKSTLLALL--KNEISADGGSYTF   60 (638)
T ss_pred             cCcEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEe
Confidence            468999999999999999999999999999  7788888898864

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.44  E-value=1.4e-07  Score=76.59  Aligned_cols=42  Identities=26%  Similarity=0.397  Sum_probs=35.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It  121 (139)
                      .+.++.+.+|.+++|+|+||+|||||+++|  .|+.+     +..|.|+
T Consensus        41 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i--~Gl~~~~~~~~~~G~i~   87 (271)
T PRK14238         41 KNINLDIHENEVTAIIGPSGCGKSTYIKTL--NRMVELVPSVKTTGKIL   87 (271)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HhhccCCCCCCCceeEE
Confidence            467899999999999999999999999999  56554     4667664

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=1.7e-07  Score=74.58  Aligned_cols=42  Identities=21%  Similarity=0.304  Sum_probs=34.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +|+.+     +..|.|.
T Consensus        21 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~p~~~~~G~v~   67 (251)
T PRK14251         21 HGISLDFEEKELTALIGPSGCGKSTFLRCL--NRMNDDIENIKITGEIK   67 (251)
T ss_pred             eeeeEEEcCCCEEEEECCCCCCHHHHHHHH--hhccccccCCCcceEEE
Confidence            457899999999999999999999999999  55554     2466553

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.43  E-value=1.9e-07  Score=81.70  Aligned_cols=42  Identities=19%  Similarity=0.334  Sum_probs=37.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  .+..++..|.|+
T Consensus       270 ~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l--~G~~~p~~G~i~  311 (501)
T PRK11288        270 EPISFSVRAGEIVGLFGLVGAGRSELMKLL--YGATRRTAGQVY  311 (501)
T ss_pred             cceeEEEeCCcEEEEEcCCCCCHHHHHHHH--cCCCcCCCceEE
Confidence            567899999999999999999999999999  777787888776

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=1.9e-07  Score=74.45  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=32.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE  116 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e  116 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  ++..++.
T Consensus        21 ~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l--~Gl~~~~   57 (251)
T PRK14249         21 KNINMDFPERQITAIIGPSGCGKSTLLRAL--NRMNDIV   57 (251)
T ss_pred             cceEEEEcCCCEEEEECCCCCCHHHHHHHH--hcccCcc
Confidence            467899999999999999999999999999  6666654

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.43  E-value=1.7e-07  Score=81.72  Aligned_cols=42  Identities=24%  Similarity=0.426  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||||||||+++|  +++.++..|.|+
T Consensus        15 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l--~Gl~~p~~G~i~   56 (491)
T PRK10982         15 DNVNLKVRPHSIHALMGENGAGKSTLLKCL--FGIYQKDSGSIL   56 (491)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCHHHHHHHH--cCCCCCCceEEE
Confidence            467899999999999999999999999999  778888888775

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.43  E-value=1.7e-07  Score=78.78  Aligned_cols=43  Identities=23%  Similarity=0.298  Sum_probs=37.4

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.++++.+.++++++|+|+||||||||+++|  .++.++..|.|.
T Consensus        31 l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l--~gl~~p~~G~i~   73 (327)
T PRK11308         31 LDGVSFTLERGKTLAVVGESGCGKSTLARLL--TMIETPTGGELY   73 (327)
T ss_pred             EeeeEEEECCCCEEEEECCCCCcHHHHHHHH--HcCCCCCCcEEE
Confidence            3468999999999999999999999999999  677777777664

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.43  E-value=1.9e-07  Score=82.95  Aligned_cols=42  Identities=26%  Similarity=0.266  Sum_probs=38.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+..+.+++|+|+|||||||||++|  .|..++..|.|.
T Consensus        24 ~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i--~G~~~p~~G~i~   65 (556)
T PRK11819         24 KDISLSFFPGAKIGVLGLNGAGKSTLLRIM--AGVDKEFEGEAR   65 (556)
T ss_pred             eCceEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEE
Confidence            468999999999999999999999999999  778888888875

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.43  E-value=1.5e-07  Score=82.67  Aligned_cols=42  Identities=19%  Similarity=0.364  Sum_probs=37.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+||||||++|  .|+.++..|.|.
T Consensus        28 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l--~Gl~~p~~G~i~   69 (510)
T PRK15439         28 KGIDFTLHAGEVHALLGGNGAGKSTLMKII--AGIVPPDSGTLE   69 (510)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            468899999999999999999999999999  778888888775

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.43  E-value=1.5e-07  Score=76.15  Aligned_cols=43  Identities=19%  Similarity=0.308  Sum_probs=35.2

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+|||||||||++|  +|...     +..|.|.
T Consensus        36 l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l--~Gl~~~~~~~~~~G~i~   83 (267)
T PRK14237         36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSL--NRMNDTIDIARVTGQIL   83 (267)
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HhccCccCCCCcceEEE
Confidence            3468899999999999999999999999999  55543     3567553

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=2e-07  Score=74.79  Aligned_cols=43  Identities=28%  Similarity=0.401  Sum_probs=39.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+..++.+.|.||||+||||||+.|  +|+.+++.|.|.-
T Consensus        19 ~~L~f~l~~Ge~~~i~G~NG~GKTtLLRil--aGLl~p~~G~v~~   61 (209)
T COG4133          19 SDLSFTLNAGEALQITGPNGAGKTTLLRIL--AGLLRPDAGEVYW   61 (209)
T ss_pred             cceeEEEcCCCEEEEECCCCCcHHHHHHHH--HcccCCCCCeEEe
Confidence            457899999999999999999999999999  8999999998754

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.42  E-value=1.6e-07  Score=82.33  Aligned_cols=43  Identities=26%  Similarity=0.380  Sum_probs=38.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+|+||||||||+++|  .++.++..|.|+-
T Consensus       301 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l--~Gl~~p~~G~i~~  343 (520)
T TIGR03269       301 DNVSLEVKEGEIFGIVGTSGAGKTTLSKII--AGVLEPTSGEVNV  343 (520)
T ss_pred             eeEEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEEE
Confidence            457889999999999999999999999999  7777777887764

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.42  E-value=2.2e-07  Score=82.40  Aligned_cols=43  Identities=26%  Similarity=0.264  Sum_probs=38.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  +|..++..|.|.-
T Consensus        22 ~~is~~i~~Ge~~~liG~NGsGKSTLl~~i--~G~~~p~~G~i~~   64 (552)
T TIGR03719        22 KDISLSFFPGAKIGVLGLNGAGKSTLLRIM--AGVDKEFNGEARP   64 (552)
T ss_pred             cCceEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEe
Confidence            468999999999999999999999999999  7788888888763

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.42  E-value=1.9e-07  Score=81.34  Aligned_cols=43  Identities=26%  Similarity=0.349  Sum_probs=37.8

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++++++|+|+||||||||+++|  .+..++..|.|.
T Consensus       264 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~i~  306 (491)
T PRK10982        264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETL--FGIREKSAGTIT  306 (491)
T ss_pred             cceeeEEEeCCcEEEEecCCCCCHHHHHHHH--cCCCcCCccEEE
Confidence            3567899999999999999999999999999  777777778765

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=2e-07  Score=74.38  Aligned_cols=42  Identities=26%  Similarity=0.362  Sum_probs=34.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc--c---ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK--S---EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~--~---e~G~It  121 (139)
                      .+.++.++++++++|+|+||||||||+++|  +++.+  +   ..|.|+
T Consensus        21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~~~~G~v~   67 (252)
T PRK14256         21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSI--NRMHDLVPSARVTGKIL   67 (252)
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHH--HhcccCCCCCCCceEEE
Confidence            467899999999999999999999999999  55543  2   356554

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=1.4e-07  Score=75.58  Aligned_cols=42  Identities=21%  Similarity=0.389  Sum_probs=34.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc--c---ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK--S---EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~--~---e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  .++..  +   ..|.|+
T Consensus        29 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l--~G~~~~~p~~~~~G~i~   75 (259)
T PRK14274         29 KNINLSIPENEVTAIIGPSGCGKSTFIKTL--NLMIQMVPNVKLTGEMN   75 (259)
T ss_pred             EeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HhhccCCCCCCCceEEE
Confidence            467899999999999999999999999999  44443  2   357654

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.42  E-value=1.6e-07  Score=72.98  Aligned_cols=31  Identities=23%  Similarity=0.268  Sum_probs=28.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .+.++.++++.+++|+|||||||||||++|.
T Consensus        12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             cceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            4678999999999999999999999999983

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.42  E-value=2.4e-07  Score=73.70  Aligned_cols=44  Identities=20%  Similarity=0.319  Sum_probs=34.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc---ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS---EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~---e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|.+.....+   ..|.|.
T Consensus        22 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~   68 (252)
T PRK14239         22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIV   68 (252)
T ss_pred             eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEE
Confidence            46789999999999999999999999999944321223   367654

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.42  E-value=1.8e-07  Score=78.79  Aligned_cols=43  Identities=16%  Similarity=0.292  Sum_probs=37.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++++++|+|+||||||||+++|  .++.++..|.|.-
T Consensus        38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i--~Gl~~p~~G~I~~   80 (331)
T PRK15079         38 DGVTLRLYEGETLGVVGESGCGKSTFARAI--IGLVKATDGEVAW   80 (331)
T ss_pred             eeEEEEEcCCCEEEEECCCCCCHHHHHHHH--HCCCCCCCcEEEE
Confidence            468899999999999999999999999999  7777777887643

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.42  E-value=2e-07  Score=81.60  Aligned_cols=42  Identities=31%  Similarity=0.390  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  +++.++..|.|.
T Consensus        21 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~I~   62 (501)
T PRK11288         21 DDISFDCRAGQVHALMGENGAGKSTLLKIL--SGNYQPDAGSIL   62 (501)
T ss_pred             eeeeEEEeCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCCEEE
Confidence            467899999999999999999999999999  777777788764

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.41  E-value=2e-07  Score=75.31  Aligned_cols=42  Identities=17%  Similarity=0.286  Sum_probs=34.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  .++..     +..|.|+
T Consensus        27 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~~~~G~i~   73 (264)
T PRK14243         27 KNVWLDIPKNQITAFIGPSGCGKSTILRCF--NRLNDLIPGFRVEGKVT   73 (264)
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHH--HhhhcccCCCCCceEEE
Confidence            467899999999999999999999999999  44432     2566654

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.41  E-value=2.2e-07  Score=74.21  Aligned_cols=43  Identities=23%  Similarity=0.362  Sum_probs=39.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.+|+.++|+|||||||||||+.+  ..+..+..|.++-
T Consensus        20 ~~isl~v~~Ge~iaitGPSG~GKStllk~v--a~Lisp~~G~l~f   62 (223)
T COG4619          20 NNISLSVRAGEFIAITGPSGCGKSTLLKIV--ASLISPTSGTLLF   62 (223)
T ss_pred             cceeeeecCCceEEEeCCCCccHHHHHHHH--HhccCCCCceEEE
Confidence            457899999999999999999999999999  8889999998874

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.41  E-value=2.3e-07  Score=81.50  Aligned_cols=43  Identities=23%  Similarity=0.295  Sum_probs=38.3

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++.+++|+|+||||||||+++|  .++.++..|.|+
T Consensus       279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i--~Gl~~p~~G~i~  321 (510)
T PRK15439        279 FRNISLEVRAGEILGLAGVVGAGRTELAETL--YGLRPARGGRIM  321 (510)
T ss_pred             ccceeEEEcCCcEEEEECCCCCCHHHHHHHH--cCCCCCCCcEEE
Confidence            3568899999999999999999999999999  778777788775

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.41  E-value=3.2e-07  Score=82.90  Aligned_cols=43  Identities=28%  Similarity=0.387  Sum_probs=38.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  .+..++..|.|+-
T Consensus       336 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l--~G~~~p~~G~i~~  378 (635)
T PRK11147        336 KDFSAQVQRGDKIALIGPNGCGKTTLLKLM--LGQLQADSGRIHC  378 (635)
T ss_pred             cCcEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCCcEEEE
Confidence            467899999999999999999999999999  7778888888864

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=2.4e-07  Score=81.54  Aligned_cols=42  Identities=29%  Similarity=0.452  Sum_probs=38.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+||||||++|  .|+.++..|.|.
T Consensus       336 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i--~G~~~p~~G~i~  377 (530)
T PRK15064        336 KNLNLLLEAGERLAIIGENGVGKTTLLRTL--VGELEPDSGTVK  377 (530)
T ss_pred             cCcEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence            467899999999999999999999999999  778888888875

>PLN03073 ABC transporter F family; Provisional

Probab=98.40  E-value=3.4e-07  Score=84.49  Aligned_cols=42  Identities=14%  Similarity=0.269  Sum_probs=38.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  .+..++..|.|+
T Consensus       526 ~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L--~Gll~p~~G~I~  567 (718)
T PLN03073        526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLI--SGELQPSSGTVF  567 (718)
T ss_pred             eccEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCCceEE
Confidence            467899999999999999999999999999  788888889887

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.40  E-value=3e-07  Score=74.75  Aligned_cols=40  Identities=23%  Similarity=0.358  Sum_probs=35.8

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.+ .+.++.+++|+|+||+||||||++|  .++.++..|.|+
T Consensus        19 ~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l--~Gl~~p~~G~I~   58 (255)
T cd03236          19 RLP-VPREGQVLGLVGPNGIGKSTALKIL--AGKLKPNLGKFD   58 (255)
T ss_pred             cCC-CCCCCCEEEEECCCCCCHHHHHHHH--hCCcCCCCceEe
Confidence            455 4899999999999999999999999  888888899885

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=2.2e-07  Score=76.31  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=35.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  +++.+     +..|.|+
T Consensus        56 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l--~Gl~~~~~~~p~~G~I~  102 (285)
T PRK14254         56 DDVSMDIPENQVTAMIGPSGCGKSTFLRCI--NRMNDLIDAARVEGELT  102 (285)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hccCCcccCCCCceEEE
Confidence            467899999999999999999999999999  66554     4567654

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=2.3e-07  Score=73.88  Aligned_cols=42  Identities=17%  Similarity=0.290  Sum_probs=35.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc---cccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK---SEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~---~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +++..   +..|.|+
T Consensus        19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~~G~i~   63 (246)
T PRK14269         19 FDINMQIEQNKITALIGASGCGKSTFLRCF--NRMNDKIAKIDGLVE   63 (246)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcccCCCCCCceEEE
Confidence            467899999999999999999999999999  55542   4567665

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.40  E-value=2.5e-07  Score=80.89  Aligned_cols=43  Identities=21%  Similarity=0.365  Sum_probs=37.6

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++++++|+|+||||||||+++|  .++.++..|.|.
T Consensus       268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l--~G~~~p~~G~I~  310 (501)
T PRK10762        268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVL--YGALPRTSGYVT  310 (501)
T ss_pred             cccceEEEcCCcEEEEecCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            3567899999999999999999999999999  777777777765

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=2.3e-07  Score=74.75  Aligned_cols=42  Identities=19%  Similarity=0.325  Sum_probs=34.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .++..+     ..|.|+
T Consensus        33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~~~~~~~sG~i~   79 (265)
T PRK14252         33 KNINMMVHEKQVTALIGPSGCGKSTFLRCF--NRMHDLYPGNHYEGEII   79 (265)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hcccCCCCCCCcccEEE
Confidence            467899999999999999999999999999  555542     466654

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=2.6e-07  Score=74.46  Aligned_cols=37  Identities=27%  Similarity=0.371  Sum_probs=32.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE  116 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e  116 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  +++.++.
T Consensus        24 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l--~Gl~~~~   60 (261)
T PRK14258         24 EGVSMEIYQSKVTAIIGPSGCGKSTFLKCL--NRMNELE   60 (261)
T ss_pred             eceEEEEcCCcEEEEECCCCCCHHHHHHHH--hcccCCC
Confidence            467899999999999999999999999999  5665543

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=2.5e-07  Score=75.56  Aligned_cols=42  Identities=29%  Similarity=0.364  Sum_probs=35.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  +++.++     ..|.|+
T Consensus        38 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l--~Gl~~p~~~~~~~G~i~   84 (276)
T PRK14271         38 DQVSMGFPARAVTSLMGPTGSGKTTFLRTL--NRMNDKVSGYRYSGDVL   84 (276)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHH--hccCCcCCCCCCceEEE
Confidence            468899999999999999999999999999  666653     567654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.39  E-value=2.8e-07  Score=81.75  Aligned_cols=43  Identities=26%  Similarity=0.348  Sum_probs=38.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  .+..++..|.|.-
T Consensus       339 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l--~G~~~p~~G~i~~  381 (552)
T TIGR03719       339 DDLSFKLPPGGIVGVIGPNGAGKSTLFRMI--TGQEQPDSGTIKI  381 (552)
T ss_pred             ccceEEEcCCCEEEEECCCCCCHHHHHHHH--cCCCCCCCeEEEE
Confidence            468899999999999999999999999999  7888888888864

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=2.4e-07  Score=77.69  Aligned_cols=43  Identities=14%  Similarity=0.233  Sum_probs=35.2

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc----cccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK----SEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~----~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+||||||||+++|  .++.+    ...|.|.
T Consensus        23 l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i--~Gl~~~~~~~~~G~i~   69 (330)
T PRK15093         23 VDRVSMTLTEGEIRGLVGESGSGKSLIAKAI--CGVTKDNWRVTADRMR   69 (330)
T ss_pred             EeeeEEEECCCCEEEEECCCCCCHHHHHHHH--HccCCCCCCCcceEEE
Confidence            3468899999999999999999999999999  55554    3456554

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.38  E-value=2.4e-07  Score=74.91  Aligned_cols=42  Identities=21%  Similarity=0.349  Sum_probs=34.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It  121 (139)
                      .+.++.++++.+++|+|+||+|||||+++|  .++..+     ..|.|+
T Consensus        25 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~~~~~~G~i~   71 (261)
T PRK14263         25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSL--NRMNDLVKGFRFEGHVH   71 (261)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HcccccccCCCCceEEE
Confidence            467899999999999999999999999999  555543     466553

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=2.9e-07  Score=80.60  Aligned_cols=43  Identities=28%  Similarity=0.322  Sum_probs=37.3

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-cccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-~e~G~It  121 (139)
                      -.+.++.++++++++|+|+||||||||+++|  +++.+ +..|.|.
T Consensus       278 l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i--~Gl~~~~~~G~i~  321 (506)
T PRK13549        278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCL--FGAYPGRWEGEIF  321 (506)
T ss_pred             ccceeeEEcCCcEEEEeCCCCCCHHHHHHHH--hCCCCCCCCcEEE
Confidence            3567899999999999999999999999999  77776 4678776

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.38  E-value=3e-07  Score=80.48  Aligned_cols=42  Identities=31%  Similarity=0.361  Sum_probs=38.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++|..++|+|++|||||||++.|  .+..++..|.|.
T Consensus       352 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL--~g~~~p~~G~I~  393 (529)
T TIGR02868       352 DGVSLDLPPGERVAILGPSGSGKSTLLMLL--TGLLDPLQGEVT  393 (529)
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence            567899999999999999999999999999  888899999885

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.37  E-value=2.6e-07  Score=75.75  Aligned_cols=42  Identities=19%  Similarity=0.283  Sum_probs=34.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .|+..     +..|.|+
T Consensus        56 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L--~Gl~~~~p~~~~~G~I~  102 (286)
T PRK14275         56 KKVNADILSKYVTAIIGPSGCGKSTFLRAI--NRMNDLIPSCHTTGALM  102 (286)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcccccCCCCCCceEEE
Confidence            467899999999999999999999999999  55432     2667654

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.37  E-value=3.6e-07  Score=72.76  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=29.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|.+
T Consensus        22 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   53 (252)
T PRK14255         22 KGIDLDFNQNEITALIGPSGCGKSTYLRTLNR   53 (252)
T ss_pred             ecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            46789999999999999999999999999944

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.36  E-value=3.1e-07  Score=73.29  Aligned_cols=32  Identities=25%  Similarity=0.432  Sum_probs=29.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.++.++++.+++|+|+||+|||||+++|.+
T Consensus        23 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14261         23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNR   54 (253)
T ss_pred             eeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence            46789999999999999999999999999943

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.36  E-value=2.9e-07  Score=80.78  Aligned_cols=43  Identities=23%  Similarity=0.358  Sum_probs=37.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCc--ccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVV--KSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~--~~e~G~Itq  122 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  .++.  .+..|.|+-
T Consensus        17 ~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l--~Gl~~~~p~~G~i~~   61 (520)
T TIGR03269        17 KNISFTIEEGEVLGILGRSGAGKSVLMHVL--RGMDQYEPTSGRIIY   61 (520)
T ss_pred             eceeEEEcCCCEEEEECCCCCCHHHHHHHH--hhcccCCCCceEEEE
Confidence            468899999999999999999999999999  6664  567788764

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.36  E-value=3.3e-07  Score=79.97  Aligned_cols=42  Identities=24%  Similarity=0.266  Sum_probs=36.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc--ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS--EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~--e~G~It  121 (139)
                      .+.++.+.++.+++|+|+|||||||||++|  .++.++  ..|.|+
T Consensus        18 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~i--~G~~~~~~~~G~i~   61 (500)
T TIGR02633        18 DGIDLEVRPGECVGLCGENGAGKSTLMKIL--SGVYPHGTWDGEIY   61 (500)
T ss_pred             cceEEEEeCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCCCeEEE
Confidence            468899999999999999999999999999  666654  567664

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.36  E-value=3.6e-07  Score=79.70  Aligned_cols=43  Identities=23%  Similarity=0.333  Sum_probs=36.9

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-ccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-EFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-e~G~It  121 (139)
                      -.+.++.+.++++++|+|+|||||||||++|  ++..++ ..|.|.
T Consensus       276 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l--~G~~~p~~~G~i~  319 (500)
T TIGR02633       276 VDDVSFSLRRGEILGVAGLVGAGRTELVQAL--FGAYPGKFEGNVF  319 (500)
T ss_pred             cccceeEEeCCcEEEEeCCCCCCHHHHHHHH--hCCCCCCCCeEEE
Confidence            3467899999999999999999999999999  777763 577775

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.36  E-value=2.8e-07  Score=77.54  Aligned_cols=42  Identities=19%  Similarity=0.267  Sum_probs=36.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc---cccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE---FGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e---~G~It  121 (139)
                      .+.++.+.++++++|+|+||||||||+++|  .++.++.   .|.|.
T Consensus        33 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l--~Gl~~p~~~~sG~I~   77 (330)
T PRK09473         33 NDLNFSLRAGETLGIVGESGSGKSQTAFAL--MGLLAANGRIGGSAT   77 (330)
T ss_pred             eeeEEEEcCCCEEEEECCCCchHHHHHHHH--HcCCCCCCCCCeEEE
Confidence            468899999999999999999999999999  6766654   67654

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.36  E-value=4.2e-07  Score=74.56  Aligned_cols=44  Identities=27%  Similarity=0.397  Sum_probs=38.7

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      -++.++....+++++|+||||+||||||+.|  +|-..++.|.++-
T Consensus        17 l~~vsl~~~pGev~ailGPNGAGKSTlLk~L--sGel~p~~G~v~~   60 (259)
T COG4559          17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKAL--SGELSPDSGEVTL   60 (259)
T ss_pred             ccCcceeccCCcEEEEECCCCccHHHHHHHh--hCccCCCCCeEee
Confidence            4568899999999999999999999999999  8878888887653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=3.4e-07  Score=80.22  Aligned_cols=42  Identities=26%  Similarity=0.388  Sum_probs=36.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc--ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS--EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~--e~G~It  121 (139)
                      .+.++.+..+.+++|+|+||||||||+++|  +++.++  ..|.|.
T Consensus        22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~~~~~~G~i~   65 (506)
T PRK13549         22 DNVSLKVRAGEIVSLCGENGAGKSTLMKVL--SGVYPHGTYEGEII   65 (506)
T ss_pred             cceeEEEeCCeEEEEECCCCCCHHHHHHHH--hCCCCCCCCCeEEE
Confidence            468899999999999999999999999999  666664  577664

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.35  E-value=3.6e-07  Score=81.19  Aligned_cols=43  Identities=28%  Similarity=0.361  Sum_probs=38.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .+..++..|.|.-
T Consensus       341 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i--~G~~~p~~G~i~~  383 (556)
T PRK11819        341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMI--TGQEQPDSGTIKI  383 (556)
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEEE
Confidence            467899999999999999999999999999  7788888888764

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.35  E-value=3.2e-07  Score=73.69  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=31.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      .+.++.+.++++++|+|+||+|||||+++|  .++.+
T Consensus        24 ~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l--~Gl~~   58 (259)
T PRK14260         24 EGISMDIYRNKVTAIIGPSGCGKSTFIKTL--NRISE   58 (259)
T ss_pred             cceEEEEcCCCEEEEECCCCCCHHHHHHHH--HhhcC
Confidence            467899999999999999999999999999  55544

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.35  E-value=3.2e-07  Score=82.80  Aligned_cols=42  Identities=24%  Similarity=0.257  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  .++.++..|.|+
T Consensus       341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i--~Gl~~p~~G~I~  382 (623)
T PRK10261        341 EKVSFDLWPGETLSLVGESGSGKSTTGRAL--LRLVESQGGEII  382 (623)
T ss_pred             eeeEeEEcCCCEEEEECCCCCCHHHHHHHH--HcCCCCCCcEEE
Confidence            467899999999999999999999999999  777777778775

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.35  E-value=3.1e-07  Score=82.91  Aligned_cols=43  Identities=19%  Similarity=0.251  Sum_probs=37.7

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+||||||||+++|  .++.++..|.|+
T Consensus        32 l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l--~Gll~p~~G~i~   74 (623)
T PRK10261         32 VRNLSFSLQRGETLAIVGESGSGKSVTALAL--MRLLEQAGGLVQ   74 (623)
T ss_pred             EEeeEEEECCCCEEEEECCCCChHHHHHHHH--HcCCCCCCeEEE
Confidence            3468999999999999999999999999999  777777777764

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.35  E-value=4.1e-07  Score=77.47  Aligned_cols=51  Identities=25%  Similarity=0.363  Sum_probs=40.5

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHh-----------------------cCCcccccccEEEEeeEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN-----------------------TSVVKSEFGGITQHIGAF  127 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~-----------------------~~v~~~e~G~Itq~i~ay  127 (139)
                      -++.++.++++.+.+|+|+||+|||||++++..                       ..-++...|.|+||++-+
T Consensus        22 l~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL   95 (339)
T COG1135          22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL   95 (339)
T ss_pred             eccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence            356899999999999999999999999999963                       112345677788887743

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.34  E-value=3.4e-07  Score=74.29  Aligned_cols=42  Identities=26%  Similarity=0.327  Sum_probs=34.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  +|+.+     +..|.|+
T Consensus        42 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l--aGl~~~~~~~~~~G~i~   88 (272)
T PRK14236         42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCF--NRMNDLVDNCRIEGEIR   88 (272)
T ss_pred             eeEEEEEcCCCEEEEECCCCCCHHHHHHHH--HhcCCCccCCCCceEEE
Confidence            467899999999999999999999999999  55544     2567664

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.34  E-value=3.9e-07  Score=74.07  Aligned_cols=42  Identities=29%  Similarity=0.425  Sum_probs=38.5

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      -.+.++.+++++.++|+||+|||||||++.|  .++..+..|.|
T Consensus        20 l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l--~GLl~p~~G~v   61 (235)
T COG1122          20 LKDVSLEIEKGERVLLIGPNGSGKSTLLKLL--NGLLKPTSGEV   61 (235)
T ss_pred             eeeeEEEECCCCEEEEECCCCCCHHHHHHHH--cCcCcCCCCEE
Confidence            3468899999999999999999999999999  88888888887

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.34  E-value=4.1e-07  Score=79.15  Aligned_cols=42  Identities=24%  Similarity=0.175  Sum_probs=34.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-e~G~It  121 (139)
                      .+.++.+.++.+++|+||||||||||+++|  +|..+. ..|.|+
T Consensus       277 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l--~G~~~~~~~G~i~  319 (490)
T PRK10938        277 HNLSWQVNPGEHWQIVGPNGAGKSTLLSLI--TGDHPQGYSNDLT  319 (490)
T ss_pred             eeceEEEcCCCEEEEECCCCCCHHHHHHHH--cCCCCcccCCeEE
Confidence            467899999999999999999999999999  555543 356543

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.34  E-value=3.6e-07  Score=80.45  Aligned_cols=42  Identities=19%  Similarity=0.309  Sum_probs=35.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It  121 (139)
                      .+.++.+.++++++|+|+||||||||+++|  .++.++     ..|.|+
T Consensus        26 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i--~G~~~~~~~~~~~G~i~   72 (529)
T PRK15134         26 NDVSLQIEAGETLALVGESGSGKSVTALSI--LRLLPSPPVVYPSGDIR   72 (529)
T ss_pred             eceEEEEeCCCEEEEECCCCCcHHHHHHHH--hcCCCCCcCCccceEEE
Confidence            468899999999999999999999999999  666654     467653

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.34  E-value=4e-07  Score=80.13  Aligned_cols=41  Identities=20%  Similarity=0.250  Sum_probs=35.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||||||||+++|  .++.+ ..|.|+
T Consensus       303 ~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l--~Gl~~-~~G~i~  343 (529)
T PRK15134        303 KNISFTLRPGETLGLVGESGSGKSTTGLAL--LRLIN-SQGEIW  343 (529)
T ss_pred             ecceeEEcCCCEEEEECCCCCCHHHHHHHH--hCcCC-CCcEEE
Confidence            567899999999999999999999999999  66664 567765

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.34  E-value=4.3e-07  Score=73.97  Aligned_cols=42  Identities=19%  Similarity=0.308  Sum_probs=34.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc-----ccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS-----EFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~-----e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|  .++...     ..|.|+
T Consensus        37 ~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l--~Gl~~~~~~~~~~G~i~   83 (274)
T PRK14265         37 VDVHLKIPAKKIIAFIGPSGCGKSTLLRCF--NRMNDLIPGAKVEGRLL   83 (274)
T ss_pred             eeeeeEEcCCCEEEEECCCCCCHHHHHHHH--hcccccccCCCcCceEE
Confidence            467899999999999999999999999999  554431     356554

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.33  E-value=4.3e-07  Score=80.28  Aligned_cols=42  Identities=21%  Similarity=0.312  Sum_probs=38.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++..++|+|+||+|||||++.|  .|+.++..|.|+
T Consensus       360 ~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll--~gl~~p~~G~I~  401 (582)
T PRK11176        360 RNINFKIPAGKTVALVGRSGSGKSTIANLL--TRFYDIDEGEIL  401 (582)
T ss_pred             cCceEEeCCCCEEEEECCCCCCHHHHHHHH--HhccCCCCceEE
Confidence            568899999999999999999999999999  888888888775

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.33  E-value=2.9e-07  Score=72.67  Aligned_cols=31  Identities=29%  Similarity=0.451  Sum_probs=28.7

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++++.+++|+++||||||||||||..+.+
T Consensus        20 ~~n~Tia~GeivtlMGPSGcGKSTLls~~~G   50 (213)
T COG4136          20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG   50 (213)
T ss_pred             eeeEEecCCcEEEEECCCCccHHHHHHHHHh
Confidence            4789999999999999999999999999965

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.32  E-value=1.1e-06  Score=63.95  Aligned_cols=45  Identities=69%  Similarity=0.967  Sum_probs=39.8

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY  132 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~  132 (139)
                      |+++++|+.|+|||||+++|.+..+.....+++|++++.+.+...
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~   45 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAE   45 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecc
Confidence            689999999999999999998877777777889999998888764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.32  E-value=3.9e-07  Score=76.46  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=31.9

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      -+++++.+.++++++|+|+||||||||+++|  .++.+
T Consensus        23 l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l--~Gll~   58 (326)
T PRK11022         23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAI--MGLID   58 (326)
T ss_pred             EeeeEEEECCCCEEEEECCCCChHHHHHHHH--HcCCC
Confidence            3468999999999999999999999999999  55554

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.31  E-value=4.7e-07  Score=72.14  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=29.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|.+
T Consensus        20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14245         20 KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNR   51 (250)
T ss_pred             eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence            46789999999999999999999999999954

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.30  E-value=5.1e-07  Score=73.54  Aligned_cols=43  Identities=30%  Similarity=0.471  Sum_probs=39.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.+..++++.+++++||+|+||||||..+  +++.+.+.|.|+-
T Consensus        18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~--sRL~~~d~G~i~i   60 (252)
T COG4604          18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMM--SRLLKKDSGEITI   60 (252)
T ss_pred             ccceeeecCCceeEEECCCCccHHHHHHHH--HHhccccCceEEE
Confidence            357889999999999999999999999999  8899999998863

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.29  E-value=4.9e-07  Score=71.89  Aligned_cols=44  Identities=20%  Similarity=0.372  Sum_probs=34.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcC-Ccc--cccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTS-VVK--SEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~-v~~--~e~G~It  121 (139)
                      .+.++.+.++.+++|+|+||+|||||+++|.+.. ..+  +..|.|+
T Consensus        20 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~   66 (250)
T PRK14266         20 KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIY   66 (250)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEE
Confidence            4678999999999999999999999999994421 112  2567654

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.29  E-value=5.4e-07  Score=74.62  Aligned_cols=43  Identities=21%  Similarity=0.280  Sum_probs=35.2

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It  121 (139)
                      -.+.++.+.++.+++|+|+|||||||||++|  .++..     +..|.|.
T Consensus        61 L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L--~Gl~~~~~~~p~~G~I~  108 (305)
T PRK14264         61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCL--NRMNDRIKAARIDGSVE  108 (305)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hccccccCCCCCceEEE
Confidence            3467899999999999999999999999999  55543     3566554

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.28  E-value=6.2e-07  Score=73.80  Aligned_cols=42  Identities=24%  Similarity=0.358  Sum_probs=36.0

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+.++++++|+|++|+|||||+++|  .++.. ..|.|.
T Consensus        20 l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L--~gl~~-~~G~I~   61 (275)
T cd03289          20 LENISFSISPGQRVGLLGRTGSGKSTLLSAF--LRLLN-TEGDIQ   61 (275)
T ss_pred             eeceEEEEcCCCEEEEECCCCCCHHHHHHHH--hhhcC-CCcEEE
Confidence            3468899999999999999999999999999  66666 567665

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.27  E-value=7.6e-07  Score=79.07  Aligned_cols=43  Identities=23%  Similarity=0.291  Sum_probs=38.9

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++..++|+|+||||||||++.|  .+..++..|.|.
T Consensus       357 l~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL--~gl~~p~~G~I~  399 (592)
T PRK10790        357 LQNINLSVPSRGFVALVGHTGSGKSTLASLL--MGYYPLTEGEIR  399 (592)
T ss_pred             eeceeEEEcCCCEEEEECCCCCCHHHHHHHH--hcccCCCCceEE
Confidence            3467899999999999999999999999999  888888888774

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.27  E-value=7.6e-07  Score=78.31  Aligned_cols=42  Identities=21%  Similarity=0.403  Sum_probs=38.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++..++|+|++|+|||||++.|  .|..+++.|.|.
T Consensus       349 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL--~gl~~~~~G~I~  390 (571)
T TIGR02203       349 DSISLVIEPGETVALVGRSGSGKSTLVNLI--PRFYEPDSGQIL  390 (571)
T ss_pred             cCeeEEecCCCEEEEECCCCCCHHHHHHHH--HhccCCCCCeEE
Confidence            467899999999999999999999999999  888888888875

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.26  E-value=8.6e-07  Score=78.79  Aligned_cols=43  Identities=23%  Similarity=0.311  Sum_probs=38.6

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+++|..++|+|+||||||||++.|  .+..++..|.|.
T Consensus       331 l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll--~g~~~p~~G~i~  373 (569)
T PRK10789        331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIR  373 (569)
T ss_pred             ccCeeEEECCCCEEEEECCCCCCHHHHHHHH--hcccCCCCCEEE
Confidence            3467899999999999999999999999999  788888888775

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.26  E-value=5.1e-07  Score=73.56  Aligned_cols=43  Identities=26%  Similarity=0.390  Sum_probs=38.3

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      ..++++...+++|++++|+||+||||+|+.|  ..+..+..|.++
T Consensus        18 vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmi--atlL~P~~G~v~   60 (245)
T COG4555          18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMI--ATLLIPDSGKVT   60 (245)
T ss_pred             hhheeEEeccceEEEEEcCCCCCchhHHHHH--HHhccCCCceEE
Confidence            4578999999999999999999999999999  677788888765

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.26  E-value=7.7e-07  Score=80.53  Aligned_cols=43  Identities=30%  Similarity=0.375  Sum_probs=39.2

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+++|..++|+|+||||||||++.|  .|..++..|.|.
T Consensus       469 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL--~gl~~p~~G~I~  511 (686)
T TIGR03797       469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL--LGFETPESGSVF  511 (686)
T ss_pred             eeeeEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCEEE
Confidence            3467899999999999999999999999999  888889999875

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.26  E-value=6.9e-07  Score=80.59  Aligned_cols=43  Identities=23%  Similarity=0.308  Sum_probs=38.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+.++.+++|+|+||+||||||++|  +|+.++..|.|+-
T Consensus        41 ~nVSfsI~~GEivgIiGpNGSGKSTLLkiL--aGLl~P~sGeI~I   83 (549)
T PRK13545         41 NNISFEVPEGEIVGIIGLNGSGKSTLSNLI--AGVTMPNKGTVDI   83 (549)
T ss_pred             eeeEEEEeCCCEEEEEcCCCCCHHHHHHHH--hCCCCCCceEEEE
Confidence            467899999999999999999999999999  7888888887753

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.25  E-value=8.7e-07  Score=77.59  Aligned_cols=43  Identities=28%  Similarity=0.324  Sum_probs=38.9

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -++.++.+++|..++|+|++|||||||++.|  .+..++..|.|.
T Consensus       338 l~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll--~g~~~~~~G~I~  380 (529)
T TIGR02857       338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLL--LGFVDPTEGSIA  380 (529)
T ss_pred             ccceeEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence            3467899999999999999999999999999  888888888875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.25  E-value=8.7e-07  Score=78.76  Aligned_cols=43  Identities=33%  Similarity=0.402  Sum_probs=38.6

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++..++|+|+||||||||++.|  .|+.++..|.|+
T Consensus       351 L~~inl~i~~G~~v~IvG~sGsGKSTLl~lL--~gl~~p~~G~I~  393 (588)
T PRK13657        351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLL--QRVFDPQSGRIL  393 (588)
T ss_pred             ecceeEEECCCCEEEEECCCCCCHHHHHHHH--hcCcCCCCCEEE
Confidence            3567899999999999999999999999999  888888888764

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.25  E-value=8.9e-07  Score=80.33  Aligned_cols=44  Identities=18%  Similarity=0.225  Sum_probs=39.3

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      -.+.++.+++|..++|+|+||||||||++.|  .|..++..|.|.-
T Consensus       495 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL--~gl~~p~~G~I~i  538 (710)
T TIGR03796       495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLV--AGLYQPWSGEILF  538 (710)
T ss_pred             ccceeEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEEE
Confidence            3467899999999999999999999999999  8888888888753

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.24  E-value=8.6e-07  Score=78.14  Aligned_cols=42  Identities=21%  Similarity=0.330  Sum_probs=38.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++|..++|+|++|||||||++.|  .|..++..|.|+
T Consensus       357 ~~inl~i~~Ge~i~IvG~sGsGKSTLlklL--~gl~~p~~G~I~  398 (576)
T TIGR02204       357 DGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRIL  398 (576)
T ss_pred             cceeEEecCCCEEEEECCCCCCHHHHHHHH--HhccCCCCCEEE
Confidence            467899999999999999999999999999  778888888774

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.23  E-value=9.6e-07  Score=78.91  Aligned_cols=45  Identities=24%  Similarity=0.348  Sum_probs=41.2

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH  123 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~  123 (139)
                      -++.++.+.+++|++++|.||+|||||++.|  +|+.++..|.|.-+
T Consensus        24 L~~v~l~v~~GEV~aL~GeNGAGKSTLmKiL--sGv~~p~~G~I~~~   68 (500)
T COG1129          24 LDGVSLTVRPGEVHALLGENGAGKSTLMKIL--SGVYPPDSGEILID   68 (500)
T ss_pred             eccceeEEeCceEEEEecCCCCCHHHHHHHH--hCcccCCCceEEEC
Confidence            3468899999999999999999999999999  99999999988765

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.23  E-value=1.6e-06  Score=70.00  Aligned_cols=46  Identities=28%  Similarity=0.374  Sum_probs=41.0

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEe
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHI  124 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i  124 (139)
                      ..+.++....++|.+|+|.||+||||||+||  ++-..+..|.++.+.
T Consensus        22 c~~vsF~l~PGeVLgiVGESGSGKtTLL~~i--s~rl~p~~G~v~Y~~   67 (258)
T COG4107          22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCI--SGRLTPDAGTVTYRM   67 (258)
T ss_pred             ccccceeecCCcEEEEEecCCCcHHhHHHHH--hcccCCCCCeEEEEc
Confidence            5578999999999999999999999999999  777788889887764

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.22  E-value=1e-06  Score=77.90  Aligned_cols=43  Identities=26%  Similarity=0.342  Sum_probs=38.7

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++..++|+|++|||||||++.|  .|..++..|.|+
T Consensus       339 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll--~g~~~~~~G~i~  381 (547)
T PRK10522        339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLL--TGLYQPQSGEIL  381 (547)
T ss_pred             EecceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence            3467899999999999999999999999999  788888888875

>PRK13409 putative ATPase RIL; Provisional

Probab=98.22  E-value=1e-06  Score=79.55  Aligned_cols=43  Identities=26%  Similarity=0.298  Sum_probs=37.6

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH  123 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~  123 (139)
                      +.++.+.++++++|+|+||+|||||+++|  +++.++..|.|+-+
T Consensus       357 ~~s~~i~~Geiv~l~G~NGsGKSTLlk~L--~Gl~~p~~G~I~~~  399 (590)
T PRK13409        357 VEGGEIYEGEVIGIVGPNGIGKTTFAKLL--AGVLKPDEGEVDPE  399 (590)
T ss_pred             ecceEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEEEe
Confidence            45677899999999999999999999999  78888888988643

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.22  E-value=1.2e-06  Score=78.11  Aligned_cols=43  Identities=30%  Similarity=0.374  Sum_probs=39.0

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++..++|+|++|||||||++.|  .+..++..|.|+
T Consensus       356 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll--~g~~~p~~G~I~  398 (574)
T PRK11160        356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL--TRAWDPQQGEIL  398 (574)
T ss_pred             eecceEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEE
Confidence            3567899999999999999999999999999  888888889875

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.20  E-value=1.3e-06  Score=77.08  Aligned_cols=44  Identities=18%  Similarity=0.256  Sum_probs=39.1

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      -.+.++.+++|..++|+|++|||||||++.|  .|..++..|.|.-
T Consensus       334 l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll--~g~~~~~~G~i~~  377 (544)
T TIGR01842       334 LRGISFRLQAGEALAIIGPSGSGKSTLARLI--VGIWPPTSGSVRL  377 (544)
T ss_pred             cccceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEE
Confidence            3568899999999999999999999999999  7888888887753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.19  E-value=1.3e-06  Score=70.50  Aligned_cols=42  Identities=26%  Similarity=0.303  Sum_probs=34.7

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      -.+.++.+++++++-++||||+||||||+.|  .+...+..|.|
T Consensus        18 L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi--~~~e~pt~G~i   59 (223)
T COG2884          18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLI--YGEERPTRGKI   59 (223)
T ss_pred             hhCceEeecCceEEEEECCCCCCHHHHHHHH--HhhhcCCCceE
Confidence            4578999999999999999999999999999  44445555544

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.19  E-value=1.3e-06  Score=77.45  Aligned_cols=41  Identities=20%  Similarity=0.339  Sum_probs=36.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++|..++|+|+||||||||++.|  .+.. +..|.|.
T Consensus       367 ~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL--~g~~-p~~G~I~  407 (588)
T PRK11174        367 GPLNFTLPAGQRIALVGPSGAGKTSLLNAL--LGFL-PYQGSLK  407 (588)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCC-CCCcEEE
Confidence            467899999999999999999999999999  7777 6678775

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.18  E-value=1.4e-06  Score=80.47  Aligned_cols=43  Identities=33%  Similarity=0.394  Sum_probs=39.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++.++.++|+|.||||||||++.|  .|+..++.|.|.-
T Consensus       490 ~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL--~gly~p~~G~I~~  532 (709)
T COG2274         490 EDLSLEIPPGEKVAIVGRSGSGKSTLLKLL--LGLYKPQQGRILL  532 (709)
T ss_pred             hceeEEeCCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEEE
Confidence            467899999999999999999999999999  8999999999853

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.18  E-value=1.2e-06  Score=73.67  Aligned_cols=43  Identities=30%  Similarity=0.382  Sum_probs=35.4

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc-----cccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-----SEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-----~e~G~It  121 (139)
                      -.+.++.+++|.+++|+|++||||||||++|  .+...     +..|.|+
T Consensus        98 L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L--~g~~~~~~~~p~~G~I~  145 (329)
T PRK14257         98 LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNL--NQLNDLIEGTSHEGEIY  145 (329)
T ss_pred             eeeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hccccccCCCCCceEEE
Confidence            3567899999999999999999999999999  55543     3467664

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.18  E-value=1.4e-06  Score=79.56  Aligned_cols=42  Identities=19%  Similarity=0.293  Sum_probs=38.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++|..++|+|+||||||||++.|  .+..++..|.|.
T Consensus       498 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL--~gl~~p~~G~I~  539 (711)
T TIGR00958       498 KGLTFTLHPGEVVALVGPSGSGKSTVAALL--QNLYQPTGGQVL  539 (711)
T ss_pred             cCceEEEcCCCEEEEECCCCCCHHHHHHHH--HhccCCCCCEEE
Confidence            468899999999999999999999999999  888888888775

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.18  E-value=1.4e-06  Score=79.03  Aligned_cols=44  Identities=30%  Similarity=0.344  Sum_probs=39.2

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      -.+.++.+++|..++|+|+||||||||++.|  .++.++..|.|+=
T Consensus       490 L~~isl~i~~G~~vaIvG~SGsGKSTLlklL--~gl~~p~~G~I~i  533 (708)
T TIGR01193       490 LSDISLTIKMNSKTTIVGMSGSGKSTLAKLL--VGFFQARSGEILL  533 (708)
T ss_pred             eeceeEEECCCCEEEEECCCCCCHHHHHHHH--hccCCCCCcEEEE
Confidence            3578899999999999999999999999999  8888888888753

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.18  E-value=1.6e-06  Score=76.97  Aligned_cols=43  Identities=21%  Similarity=0.261  Sum_probs=38.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++..++|+|++|+|||||++.|  .+..++..|.|.-
T Consensus       359 ~~vs~~i~~G~~~aivG~sGsGKSTl~~ll--~g~~~p~~G~i~~  401 (555)
T TIGR01194       359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLF--CGLYIPQEGEILL  401 (555)
T ss_pred             ccceEEEcCCcEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEEE
Confidence            457899999999999999999999999999  8888888898753

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.17  E-value=2.4e-06  Score=76.79  Aligned_cols=55  Identities=27%  Similarity=0.300  Sum_probs=44.5

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE----EEeeEEEEEeee
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT----QHIGAFVGFLYH  133 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It----q~i~ay~V~~~~  133 (139)
                      -.+.++.+.++.-++|+||||+||||||+.|  .+...+..|.|.    -.||+|.-...+
T Consensus       338 ~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l--~g~~~~~~G~v~~g~~v~igyf~Q~~~~  396 (530)
T COG0488         338 LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLL--AGELGPLSGTVKVGETVKIGYFDQHRDE  396 (530)
T ss_pred             ecCceEEecCCCEEEEECCCCCCHHHHHHHH--hhhcccCCceEEeCCceEEEEEEehhhh
Confidence            3468899999999999999999999999999  666667788554    568887655433

>PRK13409 putative ATPase RIL; Provisional

Probab=98.17  E-value=1.6e-06  Score=78.26  Aligned_cols=41  Identities=24%  Similarity=0.297  Sum_probs=36.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.+ .+.++.+++|+|+||+||||||++|  +|+.++..|.|.
T Consensus        91 ~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL--~G~l~p~~G~i~  131 (590)
T PRK13409         91 YGLP-IPKEGKVTGILGPNGIGKTTAVKIL--SGELIPNLGDYE  131 (590)
T ss_pred             ecCC-cCCCCCEEEEECCCCCCHHHHHHHH--hCCccCCCcccc
Confidence            3455 6899999999999999999999999  888888888875

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.16  E-value=1.5e-06  Score=73.47  Aligned_cols=42  Identities=26%  Similarity=0.359  Sum_probs=38.6

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      -.+.++.+|+|.+++++|+||+||||+|+.|  +|+..+..|.+
T Consensus        40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmL--TGll~p~~G~v   81 (325)
T COG4586          40 VQDISFEIPKGEIVGFLGANGAGKSTTLKML--TGLLLPTSGKV   81 (325)
T ss_pred             hheeeeecCCCcEEEEEcCCCCcchhhHHHH--hCccccCCCeE
Confidence            3578999999999999999999999999999  88888888876

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.15  E-value=1.7e-06  Score=78.37  Aligned_cols=42  Identities=26%  Similarity=0.442  Sum_probs=38.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++|..++|+|+||||||||++.|  .+..++..|.|.
T Consensus       482 ~~i~l~i~~G~~iaIvG~sGsGKSTLlklL--~gl~~p~~G~I~  523 (694)
T TIGR03375       482 DNVSLTIRPGEKVAIIGRIGSGKSTLLKLL--LGLYQPTEGSVL  523 (694)
T ss_pred             eeeeEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEE
Confidence            467899999999999999999999999999  888888888775

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.15  E-value=1.8e-06  Score=77.78  Aligned_cols=44  Identities=23%  Similarity=0.329  Sum_probs=40.2

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      -+++++.+.++++++|+|.||||||||.++|  .++.++..|.|+-
T Consensus       307 v~~VSf~l~~GE~lglVGeSGsGKSTlar~i--~gL~~P~~G~i~~  350 (539)
T COG1123         307 VDDVSFDLREGETLGLVGESGSGKSTLARIL--AGLLPPSSGSIIF  350 (539)
T ss_pred             eeeeeeEecCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEE
Confidence            4578999999999999999999999999999  8899998888765

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.14  E-value=2e-06  Score=76.87  Aligned_cols=43  Identities=35%  Similarity=0.393  Sum_probs=38.7

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+++|..++|+|+||+|||||++.|  .+..++..|.|.
T Consensus       351 l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll--~g~~~~~~G~i~  393 (585)
T TIGR01192       351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQIL  393 (585)
T ss_pred             ccceeEEEcCCCEEEEECCCCCCHHHHHHHH--ccCCCCCCCEEE
Confidence            3567899999999999999999999999999  788888888775

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PLN03211 ABC transporter G-25; Provisional

Probab=98.14  E-value=1.6e-06  Score=79.31  Aligned_cols=43  Identities=21%  Similarity=0.377  Sum_probs=35.1

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc--cccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE--FGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e--~G~It  121 (139)
                      -.+.++.+++|++++|+||||+||||||++|  +|..++.  .|.|.
T Consensus        84 L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iL--aG~~~~~~~sG~I~  128 (659)
T PLN03211         84 LNGVTGMASPGEILAVLGPSGSGKSTLLNAL--AGRIQGNNFTGTIL  128 (659)
T ss_pred             eeCCEEEEECCEEEEEECCCCCCHHHHHHHH--hCCCCCCceeEEEE
Confidence            4568899999999999999999999999999  5555442  56553

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=2.5e-06  Score=70.27  Aligned_cols=45  Identities=27%  Similarity=0.247  Sum_probs=35.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      ...|+.+..+++.+||||||+|||||..+|.+.---....|.|+-
T Consensus        21 kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~   65 (251)
T COG0396          21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF   65 (251)
T ss_pred             cCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEE
Confidence            468999999999999999999999999999653222344555543

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.14  E-value=2.2e-06  Score=71.38  Aligned_cols=45  Identities=20%  Similarity=0.216  Sum_probs=41.5

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH  123 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~  123 (139)
                      -+++++.+.++++++++|.||||||||-++|  .++..+..|.|+-+
T Consensus        29 vd~Vsf~i~~ge~~glVGESG~GKSTlgr~i--~~L~~pt~G~i~f~   73 (268)
T COG4608          29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLI--LGLEEPTSGEILFE   73 (268)
T ss_pred             ecceeEEEcCCCEEEEEecCCCCHHHHHHHH--HcCcCCCCceEEEc
Confidence            4578999999999999999999999999999  99999999998754

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.14  E-value=2.4e-06  Score=73.44  Aligned_cols=42  Identities=29%  Similarity=0.427  Sum_probs=38.3

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      +.++.++.++|.+|||-||||||||+++|  .++..+..|.|.-
T Consensus        46 ~~sl~v~~GeIfViMGLSGSGKSTLvR~~--NrLiept~G~ilv   87 (386)
T COG4175          46 DASLDVEEGEIFVIMGLSGSGKSTLVRLL--NRLIEPTRGEILV   87 (386)
T ss_pred             cceeeecCCeEEEEEecCCCCHHHHHHHH--hccCCCCCceEEE
Confidence            46789999999999999999999999999  8888999998764

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=2.7e-06  Score=76.84  Aligned_cols=44  Identities=25%  Similarity=0.379  Sum_probs=39.8

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      ..+.+++++.+..++|+|+||||||||++.|  .|+.++..|.|+-
T Consensus       337 l~~l~~t~~~g~~talvG~SGaGKSTLl~lL--~G~~~~~~G~I~v  380 (559)
T COG4988         337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLL--LGFLAPTQGEIRV  380 (559)
T ss_pred             cCCceeEecCCcEEEEECCCCCCHHHHHHHH--hCcCCCCCceEEE
Confidence            4578999999999999999999999999999  8888888888753

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.12  E-value=2.8e-06  Score=69.90  Aligned_cols=42  Identities=29%  Similarity=0.400  Sum_probs=37.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      ...++.++.+.+++|+|+||+|||||+++|  +|-.....|.|.
T Consensus        23 ~~~sL~I~~g~FvtViGsNGAGKSTlln~i--aG~l~~t~G~I~   64 (263)
T COG1101          23 NGLSLEIAEGDFVTVIGSNGAGKSTLLNAI--AGDLKPTSGQIL   64 (263)
T ss_pred             hcCceeecCCceEEEEcCCCccHHHHHHHh--hCccccCCceEE
Confidence            457899999999999999999999999999  777778888764

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.12  E-value=2.4e-06  Score=77.80  Aligned_cols=43  Identities=21%  Similarity=0.147  Sum_probs=37.5

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++++++|+|+||||||||+++|  .+..++..|.|+
T Consensus       468 l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL--~Gl~~~~~G~i~  510 (659)
T TIGR00954       468 IESLSFEVPSGNHLLICGPNGCGKSSLFRIL--GELWPVYGGRLT  510 (659)
T ss_pred             eecceEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCeEe
Confidence            3467899999999999999999999999999  777777778765

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.10  E-value=2.8e-06  Score=77.10  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=38.9

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      -.+.++.+++|..++|+|++|||||||++.|  .+..++..|.|+-
T Consensus       473 l~~i~l~i~~G~~vaivG~sGsGKSTL~~ll--~g~~~p~~G~I~i  516 (694)
T TIGR01846       473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLL--QRLYTPQHGQVLV  516 (694)
T ss_pred             cccceEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEEE
Confidence            3467899999999999999999999999999  8888888887753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.08  E-value=2.9e-06  Score=76.59  Aligned_cols=36  Identities=28%  Similarity=0.342  Sum_probs=31.5

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      -.+.+..+++|++++|||++||||||||++|  ++..+
T Consensus        41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L--~g~~~   76 (617)
T TIGR00955        41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNAL--AFRSP   76 (617)
T ss_pred             ccCCEEEEeCCeEEEEECCCCCCHHHHHHHH--hCCCC
Confidence            3578999999999999999999999999999  54443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.07  E-value=5.6e-06  Score=74.40  Aligned_cols=46  Identities=24%  Similarity=0.413  Sum_probs=41.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEee
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIG  125 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~  125 (139)
                      .+.++.+..+.-++++|+||+||||||++|  +|...+..|.|+-.-+
T Consensus        20 ~~~~l~~~~G~riGLvG~NGaGKSTLLkil--aG~~~~~~G~i~~~~~   65 (530)
T COG0488          20 ENVSLTLNPGERIGLVGRNGAGKSTLLKIL--AGELEPDSGEVTRPKG   65 (530)
T ss_pred             cCCcceeCCCCEEEEECCCCCCHHHHHHHH--cCCCcCCCCeEeecCC
Confidence            467899999999999999999999999999  8888889998876654

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.07  E-value=3.2e-06  Score=56.16  Aligned_cols=23  Identities=43%  Similarity=0.616  Sum_probs=20.8

Q ss_pred             CCCEEEEEeecCCchhHHHHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +++++.|.|++|+|||||||+|.
T Consensus        22 ~g~~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   22 RGDVTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45699999999999999999995

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.07  E-value=2.3e-06  Score=62.26  Aligned_cols=30  Identities=30%  Similarity=0.117  Sum_probs=27.3

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +.++.+.++.+++|+|+||||||||++++.
T Consensus         7 ~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           7 GVLVDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             eeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            467888999999999999999999999983

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=98.06  E-value=3.2e-06  Score=76.75  Aligned_cols=42  Identities=26%  Similarity=0.320  Sum_probs=37.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+|+||||||||+++|  .+..++..|.++
T Consensus        25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i--~Gl~~~~~G~i~   66 (648)
T PRK10535         25 KGISLDIYAGEMVAIVGASGSGKSTLMNIL--GCLDKPTSGTYR   66 (648)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCeEEE
Confidence            467899999999999999999999999999  777778888653

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.05  E-value=2.9e-06  Score=67.42  Aligned_cols=28  Identities=29%  Similarity=0.363  Sum_probs=25.7

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHH
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLL  104 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL  104 (139)
                      -.+.++.++++++++|+|+||||||||+
T Consensus        11 l~~vsl~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270          11 LKNVDVDIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             cccceeecCCCcEEEEEcCCCCCHHHHH
Confidence            3468999999999999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.05  E-value=4.2e-06  Score=74.10  Aligned_cols=42  Identities=29%  Similarity=0.354  Sum_probs=38.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++++.++|+||+|||||||++.|  .++..+..|.|.
T Consensus       346 ~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL--~r~~~~~~G~I~  387 (567)
T COG1132         346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLL--LRLYDPTSGEIL  387 (567)
T ss_pred             cCceEEEcCCCEEEEECCCCCCHHHHHHHH--hccCCCCCCeEE
Confidence            468899999999999999999999999999  888888888876

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.03  E-value=3.5e-06  Score=70.37  Aligned_cols=44  Identities=20%  Similarity=0.249  Sum_probs=39.8

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      -.+.++.++.+++.+++||||+||||.++.|  .++..+..|.|+-
T Consensus        18 v~~isf~v~~G~i~GllG~NGAGKTTtfRmI--Lglle~~~G~I~~   61 (300)
T COG4152          18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMI--LGLLEPTEGEITW   61 (300)
T ss_pred             ecceeeeecCCeEEEeecCCCCCccchHHHH--hccCCccCceEEE
Confidence            3468899999999999999999999999999  8899998888764

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.02  E-value=5.3e-06  Score=74.20  Aligned_cols=38  Identities=16%  Similarity=0.171  Sum_probs=31.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG  119 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~  119 (139)
                      .++++.++++++++|+|||||||||||+    .+...+..|+
T Consensus        23 ~~Vsl~i~~GEiv~L~G~SGsGKSTLLr----~~l~~~~sGg   60 (504)
T TIGR03238        23 VKFNKELPSSSLLFLCGSSGDGKSEILA----ENKRKFSEGY   60 (504)
T ss_pred             hCCceeecCCCEEEEECCCCCCHHHHHh----cCCCCCCCCC
Confidence            4678999999999999999999999999    2344455554

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.01  E-value=5.4e-06  Score=73.93  Aligned_cols=42  Identities=26%  Similarity=0.441  Sum_probs=37.3

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      .+++++.+.+++|.+++|.||+|||||+++|  .|+.++..|.|
T Consensus        20 nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL--~G~~~P~~GeI   61 (501)
T COG3845          20 NDDVSLSVKKGEIHALLGENGAGKSTLMKIL--FGLYQPDSGEI   61 (501)
T ss_pred             cCceeeeecCCcEEEEeccCCCCHHHHHHHH--hCcccCCcceE
Confidence            5678999999999999999999999999999  77777776665

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.01  E-value=2.8e-06  Score=66.49  Aligned_cols=30  Identities=20%  Similarity=0.437  Sum_probs=26.0

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++.+.++ +++|+||||+|||||+++|.+
T Consensus        15 ~~~l~~~~g-~~~i~G~nGsGKStll~al~~   44 (197)
T cd03278          15 KTTIPFPPG-LTAIVGPNGSGKSNIIDAIRW   44 (197)
T ss_pred             CeeeecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence            456777788 999999999999999999953

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.00  E-value=4.6e-06  Score=70.89  Aligned_cols=41  Identities=20%  Similarity=0.452  Sum_probs=35.9

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++..+...|+++.||||+|||||+|+|  +|+..++.|.|.
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTslin~I--aGL~rPdeG~I~   56 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLINMI--AGLTRPDEGRIE   56 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHHHHH--hccCCccccEEE
Confidence            45677888899999999999999999999  788888888774

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.95  E-value=5.2e-06  Score=84.45  Aligned_cols=42  Identities=24%  Similarity=0.381  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+.++++++|+||||+|||||+++|  +|+.++..|.|+
T Consensus       947 ~~lsl~I~~Gei~aLLG~NGAGKSTLLkiL--aGLl~PtsG~I~  988 (2272)
T TIGR01257       947 DRLNITFYENQITAFLGHNGAGKTTTLSIL--TGLLPPTSGTVL  988 (2272)
T ss_pred             EeeEEEEcCCcEEEEECCCCChHHHHHHHH--hcCCCCCceEEE
Confidence            457888999999999999999999999999  888888888774

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=97.95  E-value=5.4e-06  Score=81.66  Aligned_cols=43  Identities=19%  Similarity=0.295  Sum_probs=38.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+++|.+++|+|+||||||||++.|  .++..+..|.|+-
T Consensus       402 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL--~gl~~p~~G~I~i  444 (1466)
T PTZ00265        402 KDLNFTLTEGKTYAFVGESGCGKSTILKLI--ERLYDPTEGDIII  444 (1466)
T ss_pred             ccceEEEcCCCEEEEECCCCCCHHHHHHHH--HHhccCCCCeEEE
Confidence            467899999999999999999999999999  7788888888764

>PLN03073 ABC transporter F family; Provisional

Probab=97.94  E-value=8.5e-06  Score=75.32  Aligned_cols=33  Identities=27%  Similarity=0.275  Sum_probs=29.9

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -.+.++.+.++..++|+|+|||||||||++|.+
T Consensus       193 l~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g  225 (718)
T PLN03073        193 IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAM  225 (718)
T ss_pred             EECCEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence            346789999999999999999999999999954

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.93  E-value=7.5e-06  Score=66.32  Aligned_cols=42  Identities=26%  Similarity=0.381  Sum_probs=36.2

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+++....+.|+.|+|-||+||||||+||  .-+..+..|.|.-
T Consensus        24 GvSL~A~~GdVisIIGsSGSGKSTfLRCi--N~LE~P~~G~I~v   65 (256)
T COG4598          24 GVSLQANAGDVISIIGSSGSGKSTFLRCI--NFLEKPSAGSIRV   65 (256)
T ss_pred             ceeeecCCCCEEEEecCCCCchhHHHHHH--HhhcCCCCceEEE
Confidence            57889999999999999999999999999  6666677777643

>PLN03140 ABC transporter G family member; Provisional

Probab=97.93  E-value=7.4e-06  Score=80.83  Aligned_cols=43  Identities=33%  Similarity=0.414  Sum_probs=35.9

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc---cccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE---FGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e---~G~It  121 (139)
                      -.+.++.++++++++|+||+||||||||++|  ++...+.   .|.|+
T Consensus       181 L~~vs~~i~~Ge~~~llGpnGSGKSTLLk~L--aG~l~~~~~~~G~I~  226 (1470)
T PLN03140        181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGEIT  226 (1470)
T ss_pred             ccCCeEEEeCCeEEEEEcCCCCCHHHHHHHH--hCCCCCCCcceeEEE
Confidence            3467899999999999999999999999999  6655554   66664

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.92  E-value=6.8e-06  Score=80.59  Aligned_cols=42  Identities=29%  Similarity=0.317  Sum_probs=34.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcc---cccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK---SEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~---~e~G~It  121 (139)
                      .+.++.++.+.+++|||+||+||||||++|  ++...   ...|.|+
T Consensus       780 ~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~L--ag~~~~g~~~~G~I~  824 (1394)
T TIGR00956       780 NNVDGWVKPGTLTALMGASGAGKTTLLNVL--AERVTTGVITGGDRL  824 (1394)
T ss_pred             eCCEEEEECCEEEEEECCCCCCHHHHHHHH--hCCCCCCCcceeEEE
Confidence            467889999999999999999999999999  55544   3456654

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.91  E-value=1.2e-05  Score=64.62  Aligned_cols=41  Identities=29%  Similarity=0.454  Sum_probs=34.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      .++++.+.+++-++|+|+||+||||||-.+  .++..+..|.+
T Consensus        27 ~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vl--AGLd~~ssGeV   67 (228)
T COG4181          27 KGVELVVKRGETVAIVGPSGSGKSTLLAVL--AGLDDPSSGEV   67 (228)
T ss_pred             ecceEEecCCceEEEEcCCCCcHHhHHHHH--hcCCCCCCceE
Confidence            357899999999999999999999999999  55555565544

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.91  E-value=8.7e-06  Score=80.23  Aligned_cols=43  Identities=19%  Similarity=0.355  Sum_probs=38.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+++|.+++|+||+||||||||++|  .|..++..|.|.-
T Consensus       443 ~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l--~G~~~~~~G~i~~  485 (1490)
T TIGR01271       443 KNISFKLEKGQLLAVAGSTGSGKSSLLMMI--MGELEPSEGKIKH  485 (1490)
T ss_pred             eeeEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEE
Confidence            467899999999999999999999999999  8888888887753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0061|consensus

Probab=97.90  E-value=9.2e-06  Score=73.85  Aligned_cols=33  Identities=36%  Similarity=0.395  Sum_probs=30.2

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -.+++.....+++.+||||+|+|||||||+|.+
T Consensus        46 L~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lag   78 (613)
T KOG0061|consen   46 LKGVSGTAKPGELLAIMGPSGSGKTTLLNALAG   78 (613)
T ss_pred             eeCcEEEEecCeEEEEECCCCCCHHHHHHHHhc
Confidence            456889999999999999999999999999965

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.90  E-value=9.6e-06  Score=62.45  Aligned_cols=37  Identities=24%  Similarity=0.281  Sum_probs=29.3

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG  119 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~  119 (139)
                      .+.+.++.+++|+|++|+|||||+++|  .+..++..|-
T Consensus        19 ~~~v~~g~~i~I~G~tGSGKTTll~aL--~~~i~~~~~~   55 (186)
T cd01130          19 WLAVEARKNILISGGTGSGKTTLLNAL--LAFIPPDERI   55 (186)
T ss_pred             HHHHhCCCEEEEECCCCCCHHHHHHHH--HhhcCCCCCE
Confidence            356778999999999999999999999  5555544443

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=97.89  E-value=4.1e-06  Score=68.20  Aligned_cols=42  Identities=26%  Similarity=0.381  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+..++.-+|+||||+|||||+|.|  ++-.++..|...
T Consensus        22 n~ls~~v~~Gelr~lIGpNGAGKTT~mD~I--tGKtrp~~G~v~   63 (249)
T COG4674          22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVI--TGKTRPQEGEVL   63 (249)
T ss_pred             eeeEEEecCCeEEEEECCCCCCceeeeeee--cccCCCCcceEE
Confidence            467899999999999999999999999999  888888877654

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.86  E-value=1e-05  Score=82.47  Aligned_cols=42  Identities=24%  Similarity=0.222  Sum_probs=37.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++|++++++|+||+|||||+++|  +|...+..|.|.
T Consensus      1956 ~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL--~Gll~ptsG~I~ 1997 (2272)
T TIGR01257      1956 DRLCVGVRPGECFGLLGVNGAGKTTTFKML--TGDTTVTSGDAT 1997 (2272)
T ss_pred             EeeEEEEcCCcEEEEECCCCCcHHHHHHHH--hCCCCCCccEEE
Confidence            467889999999999999999999999999  888888888775

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=97.86  E-value=1.1e-05  Score=79.54  Aligned_cols=43  Identities=21%  Similarity=0.353  Sum_probs=38.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+++|..++|+|++||||||||++|  .|..++..|.|.-
T Consensus       655 ~~isl~i~~G~~v~IvG~~GsGKSTLl~~l--~g~~~~~~G~i~~  697 (1522)
T TIGR00957       655 NGITFSIPEGALVAVVGQVGCGKSSLLSAL--LAEMDKVEGHVHM  697 (1522)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCccCCcEEEE
Confidence            467899999999999999999999999999  7788888887753

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.84  E-value=1.2e-05  Score=63.13  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=24.3

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+..+++++|+||||+|||||++.|.+
T Consensus        20 i~l~~g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          20 IDMEKKNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             EEEcCCcEEEEECCCCCChHHHHHHHHH
Confidence            4555579999999999999999999964

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=97.83  E-value=1.7e-05  Score=65.69  Aligned_cols=33  Identities=33%  Similarity=0.288  Sum_probs=29.9

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -.+.+..+..++-..|+|+||+||||||+.+.+
T Consensus        47 L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~   79 (257)
T COG1119          47 LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG   79 (257)
T ss_pred             ccccceeecCCCcEEEECCCCCCHHHHHHHHhc
Confidence            346889999999999999999999999999954

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=97.83  E-value=1.6e-05  Score=70.48  Aligned_cols=42  Identities=29%  Similarity=0.360  Sum_probs=39.1

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+|+.+.||++|-++|-||||||||+..|  +|+-++..|+|.-
T Consensus       341 PiNl~ikrGelvFliG~NGsGKST~~~LL--tGL~~PqsG~I~l  382 (546)
T COG4615         341 PINLTIKRGELVFLIGGNGSGKSTLAMLL--TGLYQPQSGEILL  382 (546)
T ss_pred             ceeeEEecCcEEEEECCCCCcHHHHHHHH--hcccCCCCCceeE
Confidence            36889999999999999999999999999  9999999999864

>PLN03232 ABC transporter C family member; Provisional

Probab=97.81  E-value=1.6e-05  Score=78.33  Aligned_cols=42  Identities=19%  Similarity=0.287  Sum_probs=37.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++|..++|+|++|||||||++.|  .|..++..|++.
T Consensus       634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lL--lG~~~~~~G~i~  675 (1495)
T PLN03232        634 SDINLEIPVGSLVAIVGGTGEGKTSLISAM--LGELSHAETSSV  675 (1495)
T ss_pred             eeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCcccCCCEE
Confidence            467899999999999999999999999999  778888888764

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.80  E-value=1.5e-05  Score=78.30  Aligned_cols=45  Identities=24%  Similarity=0.264  Sum_probs=35.0

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcC--CcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTS--VVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~--v~~~e~G~It  121 (139)
                      -.+.++.++.|++++|+|+||+||||||++|.+..  ...+..|.|+
T Consensus        77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~  123 (1394)
T TIGR00956        77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVIT  123 (1394)
T ss_pred             eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEE
Confidence            34688999999999999999999999999995421  1234566664

>PTZ00243 ABC transporter; Provisional

Probab=97.79  E-value=1.7e-05  Score=78.63  Aligned_cols=42  Identities=31%  Similarity=0.408  Sum_probs=37.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++|.+++|+|+|||||||||++|  .+..++..|.|.
T Consensus       677 ~~isl~i~~G~~~~IiG~nGsGKSTLL~~i--~G~~~~~~G~i~  718 (1560)
T PTZ00243        677 RDVSVSVPRGKLTVVLGATGSGKSTLLQSL--LSQFEISEGRVW  718 (1560)
T ss_pred             eeeEEEECCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCcEEE
Confidence            367889999999999999999999999999  777778888764

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.78  E-value=1.4e-05  Score=63.03  Aligned_cols=22  Identities=23%  Similarity=0.546  Sum_probs=20.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHH
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +.+++|+||||+|||||+++|.
T Consensus        23 ~~~~~i~GpNGsGKStll~ai~   44 (243)
T cd03272          23 PKHNVVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             CCcEEEECCCCCCHHHHHHHHH
Confidence            6799999999999999999995

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR00235 udk uridine kinase

Probab=97.78  E-value=1.6e-05  Score=62.02  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=23.6

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+++.+++|+|++|||||||+++|.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence            47789999999999999999999954

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PLN03232 ABC transporter C family member; Provisional

Probab=97.77  E-value=2.3e-05  Score=77.33  Aligned_cols=42  Identities=26%  Similarity=0.419  Sum_probs=38.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++++.++|+|++|||||||++.|  .++.++..|.|.
T Consensus      1253 ~~isl~I~~GekvaIVG~SGSGKSTL~~lL--~rl~~p~~G~I~ 1294 (1495)
T PLN03232       1253 HGLSFFVSPSEKVGVVGRTGAGKSSMLNAL--FRIVELEKGRIM 1294 (1495)
T ss_pred             ccceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCcCCCceEE
Confidence            567899999999999999999999999999  888899999885

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=2.5e-05  Score=70.61  Aligned_cols=44  Identities=27%  Similarity=0.379  Sum_probs=37.8

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      -.+.++.+.+|+-++|+|++|||||||+..|  .+-..+..|.|+-
T Consensus       354 L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl--~~~~~~~~G~i~~  397 (573)
T COG4987         354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLL--AGAWDPQQGSITL  397 (573)
T ss_pred             hhccceeecCCCeEEEECCCCCCHHHHHHHH--HhccCCCCCeeeE
Confidence            3567899999999999999999999999999  6666777777754

>PLN03140 ABC transporter G family member; Provisional

Probab=97.75  E-value=2.1e-05  Score=77.65  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=29.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.++.++++.+++|||+||+||||||++|.+
T Consensus       897 ~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG  928 (1470)
T PLN03140        897 REVTGAFRPGVLTALMGVSGAGKTTLMDVLAG  928 (1470)
T ss_pred             eCcEEEEECCeEEEEECCCCCCHHHHHHHHcC
Confidence            46788999999999999999999999999954

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.75  E-value=1.5e-05  Score=63.80  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=21.9

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.+++|+|+||||||||+++|..
T Consensus        24 ~~~~~~IvG~NGsGKStll~Ai~~   47 (251)
T cd03273          24 DPQFNAITGLNGSGKSNILDAICF   47 (251)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999999963

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.72  E-value=2.3e-05  Score=60.09  Aligned_cols=23  Identities=35%  Similarity=0.576  Sum_probs=21.0

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+++|+||+|+|||||++.|++
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~   24 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQ   24 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            56899999999999999999965

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=97.72  E-value=2.2e-05  Score=59.87  Aligned_cols=24  Identities=50%  Similarity=0.708  Sum_probs=21.8

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++++++||+|||||||+++|..
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~   25 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLG   25 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEECCCCCCcEeechhhhh
Confidence            457899999999999999999985

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=97.72  E-value=2.3e-05  Score=61.47  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=21.4

Q ss_pred             CCCEEEEEeecCCchhHHHHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .+++++|+|+||+||||||++|.
T Consensus        27 ~~~~~~i~G~NGsGKSTll~~i~   49 (213)
T cd03279          27 NNGLFLICGPTGAGKSTILDAIT   49 (213)
T ss_pred             ccCEEEEECCCCCCHHHHHHHhe
Confidence            37899999999999999999995

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PLN03130 ABC transporter C family member; Provisional

Probab=97.69  E-value=2.5e-05  Score=77.67  Aligned_cols=42  Identities=17%  Similarity=0.322  Sum_probs=36.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccc-ccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF-GGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~-G~It  121 (139)
                      .+.++.+++|..++|+|++|||||||+++|  .|..++.. |.|.
T Consensus       634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lL--lG~~~~~~GG~I~  676 (1622)
T PLN03130        634 SNINLDVPVGSLVAIVGSTGEGKTSLISAM--LGELPPRSDASVV  676 (1622)
T ss_pred             eceeEEecCCCEEEEECCCCCCHHHHHHHH--HHhhccCCCceEE
Confidence            468899999999999999999999999999  77777777 6654

>PTZ00243 ABC transporter; Provisional

Probab=97.69  E-value=3.5e-05  Score=76.46  Aligned_cols=42  Identities=31%  Similarity=0.311  Sum_probs=38.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++++.++|+|++|+|||||++.|  .++..+..|.|.
T Consensus      1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lL--lrl~~p~~G~I~ 1368 (1560)
T PTZ00243       1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTF--MRMVEVCGGEIR 1368 (1560)
T ss_pred             ecceEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            467899999999999999999999999999  888899999886

>PLN03130 ABC transporter C family member; Provisional

Probab=97.68  E-value=3.5e-05  Score=76.72  Aligned_cols=42  Identities=29%  Similarity=0.391  Sum_probs=38.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++.++.++|+|++|||||||++.|  .++.++..|.|.
T Consensus      1256 ~~is~~I~~GekVaIVGrSGSGKSTLl~lL--~rl~~p~~G~I~ 1297 (1622)
T PLN03130       1256 HGLSFEISPSEKVGIVGRTGAGKSSMLNAL--FRIVELERGRIL 1297 (1622)
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHH--hCcCCCCCceEE
Confidence            467899999999999999999999999999  888899999885

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.67  E-value=3e-05  Score=60.19  Aligned_cols=30  Identities=30%  Similarity=0.340  Sum_probs=26.6

Q ss_pred             CCCccccCC-CEEEEEeecCCchhHHHHHHH
Q psy4669          79 DPSVLMKRP-PVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        79 ~~~~~~~r~-pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +.++.+..+ +++.|+||||+||||||+.|.
T Consensus        19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             cceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence            467788887 699999999999999999986

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.67  E-value=9.9e-05  Score=51.42  Aligned_cols=43  Identities=26%  Similarity=0.255  Sum_probs=30.8

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL  131 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~  131 (139)
                      -++++|+.|+|||||++.+.+........-.++.++..+++..
T Consensus         3 ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~   45 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE   45 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE
Confidence            5789999999999999999776533333346666666655444

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.67  E-value=2.7e-05  Score=61.61  Aligned_cols=21  Identities=24%  Similarity=0.510  Sum_probs=20.2

Q ss_pred             CEEEEEeecCCchhHHHHHHH
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ++++|+||||+|||||+++|.
T Consensus        26 ~i~~ivGpNGaGKSTll~~i~   46 (212)
T cd03274          26 SFSAIVGPNGSGKSNVIDSML   46 (212)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            899999999999999999986

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=97.65  E-value=5.8e-06  Score=67.41  Aligned_cols=42  Identities=26%  Similarity=0.381  Sum_probs=38.8

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      +.++.+.++++|+++||||+||||.+..+  .|+.++..|.|.-
T Consensus        22 ~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi--~Glv~~d~G~i~l   63 (243)
T COG1137          22 DVSLEVNSGEIVGLLGPNGAGKTTTFYMI--VGLVRPDSGKILL   63 (243)
T ss_pred             eeeEEEcCCcEEEEECCCCCCceeEEEEE--EEEEecCCceEEE
Confidence            57899999999999999999999999999  9999999998754

>KOG0058|consensus

Probab=97.65  E-value=3.9e-05  Score=71.02  Aligned_cols=43  Identities=23%  Similarity=0.309  Sum_probs=39.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      ++.+++++.|++|+++||||+||||+...|  .++-.+..|.|.-
T Consensus       485 k~lsfti~pGe~vALVGPSGsGKSTiasLL--~rfY~PtsG~Ill  527 (716)
T KOG0058|consen  485 KNLSFTIRPGEVVALVGPSGSGKSTIASLL--LRFYDPTSGRILL  527 (716)
T ss_pred             cCceeeeCCCCEEEEECCCCCCHHHHHHHH--HHhcCCCCCeEEE
Confidence            468999999999999999999999999999  8888888888764

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.64  E-value=3.5e-05  Score=59.84  Aligned_cols=30  Identities=20%  Similarity=0.236  Sum_probs=25.9

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+..+.++.+++++|+||+||||||++|+.
T Consensus        22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          22 NDINLGSGRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             eeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence            345666789999999999999999999973

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=97.63  E-value=4.8e-05  Score=75.23  Aligned_cols=43  Identities=26%  Similarity=0.254  Sum_probs=39.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+++|+.++|+|++|+|||||++.|  .++.++..|.|.=
T Consensus      1303 ~~is~~I~~GekiaIVGrTGsGKSTL~~lL--~rl~~~~~G~I~I 1345 (1522)
T TIGR00957      1303 RHINVTIHGGEKVGIVGRTGAGKSSLTLGL--FRINESAEGEIII 1345 (1522)
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHH--hcCccCCCCeEEE
Confidence            467899999999999999999999999999  8888888898753

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0060|consensus

Probab=97.63  E-value=4.8e-05  Score=69.44  Aligned_cols=43  Identities=28%  Similarity=0.285  Sum_probs=36.0

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH  123 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~  123 (139)
                      +.++.++++..+.|+||+|||||+||+.|  .++-+...|.++-+
T Consensus       453 ~Ls~~V~~g~~LLItG~sG~GKtSLlRvl--ggLWp~~~G~l~k~  495 (659)
T KOG0060|consen  453 NLSLEVPSGQNLLITGPSGCGKTSLLRVL--GGLWPSTGGKLTKP  495 (659)
T ss_pred             eeeeEecCCCeEEEECCCCCchhHHHHHH--hcccccCCCeEEec
Confidence            47889999999999999999999999999  66666566666544

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=97.63  E-value=5e-05  Score=59.00  Aligned_cols=21  Identities=43%  Similarity=0.767  Sum_probs=19.0

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++||+|||||||+++|.+
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~   22 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSG   22 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999944

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=97.61  E-value=4e-05  Score=60.17  Aligned_cols=26  Identities=31%  Similarity=0.608  Sum_probs=21.7

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +.+..+ +++|+||||+||||||++|.
T Consensus        18 l~~~~g-~~~i~G~NGsGKTTLl~ai~   43 (204)
T cd03240          18 IEFFSP-LTLIVGQNGAGKTTIIEALK   43 (204)
T ss_pred             EecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            334444 99999999999999999984

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=97.61  E-value=4.6e-05  Score=68.72  Aligned_cols=42  Identities=21%  Similarity=0.305  Sum_probs=36.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+..+..++|+||||+|||||.+.|  .++.++..|.+.
T Consensus       353 ~~isF~l~~G~~lgIIGPSgSGKSTLaR~l--vG~w~p~~G~VR  394 (580)
T COG4618         353 KGISFALQAGEALGIIGPSGSGKSTLARLL--VGIWPPTSGSVR  394 (580)
T ss_pred             ecceeEecCCceEEEECCCCccHHHHHHHH--HcccccCCCcEE
Confidence            357899999999999999999999999999  777777777654

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.61  E-value=5.7e-05  Score=64.27  Aligned_cols=41  Identities=17%  Similarity=0.281  Sum_probs=34.6

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG  119 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~  119 (139)
                      -+++++.+.++++++|+|.|||||||+..+|  .++.+...+.
T Consensus        21 v~~vs~~i~~GE~lgiVGESGsGKS~~~~ai--m~llp~~~~~   61 (316)
T COG0444          21 VDGVSFELKKGEILGIVGESGSGKSVLAKAI--MGLLPKPNAR   61 (316)
T ss_pred             EeceeEEEcCCcEEEEEcCCCCCHHHHHHHH--HhccCCCCCe
Confidence            4578999999999999999999999999999  6666643333

>KOG0057|consensus

Probab=97.60  E-value=4e-05  Score=69.44  Aligned_cols=41  Identities=27%  Similarity=0.325  Sum_probs=35.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      ...++.+++|+-|+|+|.|||||||+|+.|  .++.. ..|.|.
T Consensus       369 ~gvsf~I~kGekVaIvG~nGsGKSTilr~L--lrF~d-~sG~I~  409 (591)
T KOG0057|consen  369 KGVSFTIPKGEKVAIVGSNGSGKSTILRLL--LRFFD-YSGSIL  409 (591)
T ss_pred             cceeEEecCCCEEEEECCCCCCHHHHHHHH--HHHhc-cCCcEE
Confidence            467999999999999999999999999999  66665 677664

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=97.59  E-value=9e-05  Score=52.85  Aligned_cols=29  Identities=21%  Similarity=0.413  Sum_probs=22.1

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFG  118 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G  118 (139)
                      ++++|++|+|||||++.|.+.+......+
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~   30 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSK   30 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecC
Confidence            68999999999999999964344443333

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.58  E-value=6.7e-05  Score=61.05  Aligned_cols=43  Identities=23%  Similarity=0.368  Sum_probs=39.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      +.+++...++...+|+|.+|+|||||.+.|  .|.+++..|.|.-
T Consensus        30 ~~vSFtL~~~QTlaiIG~NGSGKSTLakMl--aGmi~PTsG~il~   72 (267)
T COG4167          30 KPVSFTLREGQTLAIIGENGSGKSTLAKML--AGMIEPTSGEILI   72 (267)
T ss_pred             cceEEEecCCcEEEEEccCCCcHhHHHHHH--hcccCCCCceEEE
Confidence            357899999999999999999999999999  8999999998753

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.57  E-value=5.6e-05  Score=62.23  Aligned_cols=30  Identities=17%  Similarity=0.259  Sum_probs=27.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHH
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTL  107 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L  107 (139)
                      .+.+..+|.+.+++|+|.||||||||++.+
T Consensus        12 ~~v~~~ip~g~~~~vtGvSGsGKStL~~~~   41 (261)
T cd03271          12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDT   41 (261)
T ss_pred             CCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence            467889999999999999999999999865

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd01861 Rab6 Rab6 subfamily

Probab=97.56  E-value=0.00022  Score=51.60  Aligned_cols=42  Identities=14%  Similarity=0.184  Sum_probs=30.1

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL  131 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~  131 (139)
                      ++++|+.++|||||++.+.+..+.....-.++.++....+.+
T Consensus         3 i~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~   44 (161)
T cd01861           3 LVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL   44 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE
Confidence            789999999999999999776655544555555554444433

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.56  E-value=6.8e-05  Score=58.13  Aligned_cols=53  Identities=17%  Similarity=0.309  Sum_probs=35.3

Q ss_pred             HHHHHHhCCeeeeeCCCCccccCCCCCcccCCCCCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          44 IDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        44 ~~i~~e~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...-+++|+++-.++.....     ..+.       . ...-++++++++|+||.|||||+|.|..
T Consensus         5 ~~~y~~~gy~v~~~S~~~~~-----g~~~-------l-~~~l~~k~~vl~G~SGvGKSSLiN~L~~   57 (161)
T PF03193_consen    5 LEQYEKLGYPVFFISAKTGE-----GIEE-------L-KELLKGKTSVLLGQSGVGKSSLINALLP   57 (161)
T ss_dssp             HHHHHHTTSEEEE-BTTTTT-----THHH-------H-HHHHTTSEEEEECSTTSSHHHHHHHHHT
T ss_pred             HHHHHHcCCcEEEEeCCCCc-----CHHH-------H-HHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence            45678899998777632111     1111       1 1223459999999999999999999965

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=97.55  E-value=7.8e-05  Score=68.15  Aligned_cols=43  Identities=23%  Similarity=0.289  Sum_probs=36.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.+++|.-+-|.|+||||||||+++|  .|+=+-..|.|.-
T Consensus       410 ~~l~~~v~~G~~llI~G~SG~GKTsLlRai--aGLWP~g~G~I~~  452 (604)
T COG4178         410 SELNFEVRPGERLLITGESGAGKTSLLRAL--AGLWPWGSGRISM  452 (604)
T ss_pred             ccceeeeCCCCEEEEECCCCCCHHHHHHHH--hccCccCCCceec
Confidence            457889999999999999999999999999  7777777776643

>cd01878 HflX HflX subfamily

Probab=97.55  E-value=0.00015  Score=55.48  Aligned_cols=27  Identities=30%  Similarity=0.571  Sum_probs=23.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      +.-+.++|+|++|+|||||+++|.+..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~   65 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGAD   65 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence            445799999999999999999996543

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.55  E-value=6.7e-05  Score=57.62  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=23.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++.+++|+|++|||||||++.|.+
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~   27 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLE   27 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHh
Confidence            5788999999999999999999965

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.54  E-value=6.8e-05  Score=60.33  Aligned_cols=46  Identities=28%  Similarity=0.366  Sum_probs=36.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE-EEee
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT-QHIG  125 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It-q~i~  125 (139)
                      .+.++.+..++-+++-||||+||||||++|  .+--.++.|.|. +|.|
T Consensus        28 ~~vslsV~aGECvvL~G~SG~GKStllr~L--YaNY~~d~G~I~v~H~g   74 (235)
T COG4778          28 RNVSLSVNAGECVVLHGPSGSGKSTLLRSL--YANYLPDEGQILVRHEG   74 (235)
T ss_pred             eceeEEecCccEEEeeCCCCCcHHHHHHHH--HhccCCCCceEEEEeCc
Confidence            357899999999999999999999999999  555556667553 4444

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=97.54  E-value=6.3e-05  Score=56.14  Aligned_cols=23  Identities=35%  Similarity=0.635  Sum_probs=20.8

Q ss_pred             CCCEEEEEeecCCchhHHHHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .+++++|.|++|+||||++++|+
T Consensus        18 ~~g~~vi~G~Ng~GKStil~ai~   40 (202)
T PF13476_consen   18 SPGLNVIYGPNGSGKSTILEAIR   40 (202)
T ss_dssp             -SEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHH
Confidence            45799999999999999999997

>KOG0055|consensus

Probab=97.54  E-value=6.3e-05  Score=73.11  Aligned_cols=42  Identities=21%  Similarity=0.321  Sum_probs=38.4

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      +.++.++.+..++++|||||||||++..|  .++-.+..|.|.=
T Consensus       371 g~sl~i~~G~~valVG~SGsGKST~i~LL--~RfydP~~G~V~i  412 (1228)
T KOG0055|consen  371 GVSLKIPSGQTVALVGPSGSGKSTLIQLL--ARFYDPTSGEVLI  412 (1228)
T ss_pred             CeEEEeCCCCEEEEECCCCCCHHHHHHHH--HHhcCCCCceEEE
Confidence            47899999999999999999999999999  8888899998764

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.54  E-value=0.00012  Score=57.45  Aligned_cols=27  Identities=30%  Similarity=0.465  Sum_probs=23.9

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...++.+++|+||+|||||||++.|+.
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~   35 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRE   35 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence            345788999999999999999999975

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.53  E-value=5e-05  Score=60.89  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.9

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++|+|+||+||||||++|..
T Consensus        22 ~~~~~i~G~NGsGKStll~ai~~   44 (247)
T cd03275          22 DRFTCIIGPNGSGKSNLMDAISF   44 (247)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999999964

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.53  E-value=6.5e-05  Score=58.33  Aligned_cols=25  Identities=36%  Similarity=0.583  Sum_probs=22.8

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+++|.|++|||||||.+.|.+
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~   28 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYE   28 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999999965

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=97.53  E-value=6.6e-05  Score=74.17  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=31.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccc
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS  115 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~  115 (139)
                      .+.++.++++..++|+|++|||||||++.|  .++..+
T Consensus      1185 ~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL--~r~ydp 1220 (1466)
T PTZ00265       1185 KDLTFSCDSKKTTAIVGETGSGKSTVMSLL--MRFYDL 1220 (1466)
T ss_pred             cCeeEEEcCCCEEEEECCCCCCHHHHHHHH--HHhCCC
Confidence            467899999999999999999999999999  555555

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.53  E-value=7.2e-05  Score=57.69  Aligned_cols=24  Identities=17%  Similarity=0.225  Sum_probs=21.9

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++.++|++|||||||+++|.+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~   25 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAA   25 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999999965

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.52  E-value=7e-05  Score=56.50  Aligned_cols=23  Identities=35%  Similarity=0.512  Sum_probs=20.6

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++++|+|++|+|||||+++|..
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~   23 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARA   23 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999955

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.52  E-value=5e-05  Score=60.22  Aligned_cols=33  Identities=27%  Similarity=0.373  Sum_probs=25.9

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG  119 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~  119 (139)
                      .++.+++|.|++|+|||||.+.|  .+......|.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L--~~~l~~~~g~   63 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFL--EALLQQDGEL   63 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHH--HHHhhhccCC
Confidence            56789999999999999999999  4444444443

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=97.52  E-value=9.2e-05  Score=66.91  Aligned_cols=44  Identities=23%  Similarity=0.292  Sum_probs=36.4

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccc----cccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE----FGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e----~G~Itq  122 (139)
                      -.+.|+.+.++++++|+|.|||||||+..+|  .++.+..    .|.|.-
T Consensus        25 v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i--~gll~~~~~~~~G~I~~   72 (539)
T COG1123          25 VRDVSFEVEPGEILGIVGESGSGKSTLALAL--MGLLPEGGRITSGEVIL   72 (539)
T ss_pred             eecceEEecCCcEEEEEcCCCCCHHHHHHHH--hccCCCCCcccceEEEE
Confidence            3578999999999999999999999999999  5555555    466543

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.52  E-value=0.00021  Score=53.91  Aligned_cols=46  Identities=28%  Similarity=0.420  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcC-Ccc-cccccEEEEeeEEEE
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTS-VVK-SEFGGITQHIGAFVG  129 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~-v~~-~e~G~Itq~i~ay~V  129 (139)
                      ..+.+.++|+|++|+|||||++.|.+.. +.. ...-+.|+++..|.+
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~   62 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV   62 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe
Confidence            3677889999999999999999997653 222 223346777777654

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01898 Obg Obg subfamily

Probab=97.52  E-value=0.00012  Score=53.47  Aligned_cols=22  Identities=36%  Similarity=0.622  Sum_probs=19.5

Q ss_pred             EEEEeecCCchhHHHHHHHhcC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++++|+.|+|||||+++|.+..
T Consensus         3 v~ivG~~~~GKStl~~~l~~~~   24 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISNAK   24 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999996543

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0065|consensus

Probab=97.50  E-value=7.9e-05  Score=72.93  Aligned_cols=42  Identities=33%  Similarity=0.358  Sum_probs=33.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH  123 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~  123 (139)
                      .+++..+..|-.+++||.||+|||||||+|++.    ...|-|+-+
T Consensus       808 ~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R----~t~G~I~Gd  849 (1391)
T KOG0065|consen  808 NNVSGAFKPGVLTALMGESGAGKTTLLDVLAGR----KTGGYIEGD  849 (1391)
T ss_pred             hcCceEecCCceeehhcCCCCchHHHHHHHhcC----cccceEEeE
Confidence            456778999999999999999999999999762    244555544

>smart00175 RAB Rab subfamily of small GTPases

Probab=97.50  E-value=0.00027  Score=51.00  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=23.6

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      ++++|+.|+|||||++.+.+..+.....-.++
T Consensus         3 v~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~   34 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTDGKFSEQYKSTIG   34 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCCCCCCcee
Confidence            78999999999999999976554433333333

Rab GTPases are implicated in vesicle trafficking.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.49  E-value=0.00014  Score=51.04  Aligned_cols=35  Identities=34%  Similarity=0.565  Sum_probs=24.6

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcc-cccccEEEEe
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQHI  124 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~-~e~G~Itq~i  124 (139)
                      ++++|+.|+|||||+++|.+.+... ...-+.|++.
T Consensus         2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~   37 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP   37 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE
T ss_pred             EEEECCCCCCHHHHHHHHhccccccccccccceeee
Confidence            6899999999999999997643322 2222445555

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.49  E-value=8.4e-05  Score=55.89  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=21.1

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+++++||+|+|||||++.|.+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~   23 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLE   23 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHc
Confidence            57899999999999999999965

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.45  E-value=0.00018  Score=50.83  Aligned_cols=21  Identities=33%  Similarity=0.627  Sum_probs=19.0

Q ss_pred             EEEEeecCCchhHHHHHHHhc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ++++|++|+|||||+++|.+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            689999999999999999654

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.44  E-value=0.0001  Score=72.79  Aligned_cols=41  Identities=29%  Similarity=0.410  Sum_probs=35.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++|..++|+|++|||||||+++|  .++.+ ..|.|.
T Consensus      1236 ~~is~~I~~GekvaIvGrSGsGKSTLl~lL--~rl~~-~~G~I~ 1276 (1490)
T TIGR01271      1236 QDLSFSVEGGQRVGLLGRTGSGKSTLLSAL--LRLLS-TEGEIQ 1276 (1490)
T ss_pred             eccEEEEcCCCEEEEECCCCCCHHHHHHHH--hhhcC-CCcEEE
Confidence            467899999999999999999999999999  66665 568774

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd04171 SelB SelB subfamily

Probab=97.43  E-value=0.00028  Score=50.81  Aligned_cols=43  Identities=37%  Similarity=0.511  Sum_probs=28.6

Q ss_pred             EEEEEeecCCchhHHHHHHHhcC--Ccccc-cccEEEEeeEEEEEe
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTS--VVKSE-FGGITQHIGAFVGFL  131 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~--v~~~e-~G~Itq~i~ay~V~~  131 (139)
                      +++++|+.++|||||+++|.+..  ....+ ..++|..++.+.+.+
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~   47 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDL   47 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEe
Confidence            78999999999999999995421  11111 234566666555544

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=97.43  E-value=8.5e-05  Score=65.72  Aligned_cols=45  Identities=27%  Similarity=0.430  Sum_probs=31.8

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcCCcc---cccccEEEEeeEE
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK---SEFGGITQHIGAF  127 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~---~e~G~Itq~i~ay  127 (139)
                      ..+..-+++++||+|||||||+++|.+.....   .-.-|||.++|.-
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa   77 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYA   77 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhcccc
Confidence            34556679999999999999999996533221   2234778777753

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=97.42  E-value=0.0002  Score=64.85  Aligned_cols=45  Identities=36%  Similarity=0.471  Sum_probs=33.6

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCC---cccccccEEEEeeEEEEEeee
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSV---VKSEFGGITQHIGAFVGFLYH  133 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v---~~~e~G~Itq~i~ay~V~~~~  133 (139)
                      +++++||+|||||||+++|.+...   ......++|.+++.+.+.+.+
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~   49 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD   49 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC
Confidence            689999999999999999964221   112246899999987766644

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04113 Rab4 Rab4 subfamily

Probab=97.40  E-value=0.00049  Score=49.99  Aligned_cols=40  Identities=20%  Similarity=0.274  Sum_probs=26.4

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEE
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVG  129 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V  129 (139)
                      ++++|+.|+|||||++.+.+..........++..+..+.+
T Consensus         3 i~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~   42 (161)
T cd04113           3 FIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKII   42 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEE
Confidence            6899999999999999997655444333333333333333

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04114 Rab30 Rab30 subfamily

Probab=97.39  E-value=0.00058  Score=49.87  Aligned_cols=27  Identities=19%  Similarity=0.247  Sum_probs=22.2

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .-..++++|+.|+|||||++.+.+..+
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~   32 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLF   32 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCC
Confidence            346799999999999999999964333

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01862 Rab7 Rab7 subfamily

Probab=97.39  E-value=0.00037  Score=50.78  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.0

Q ss_pred             EEEEeecCCchhHHHHHHHhcCC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ++++|+.|+|||||++++.+...
T Consensus         3 i~viG~~~~GKSsl~~~l~~~~~   25 (172)
T cd01862           3 VIILGDSGVGKTSLMNQYVNKKF   25 (172)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            78999999999999999976543

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.38  E-value=0.00016  Score=49.20  Aligned_cols=24  Identities=38%  Similarity=0.459  Sum_probs=21.2

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++.+.+.||.|+||||++..|..
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~   24 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALAR   24 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHh
Confidence            367899999999999999999954

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=97.36  E-value=0.00056  Score=49.30  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.5

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      ++++|+.|+|||||++++.+....
T Consensus         3 i~~vG~~~vGKTsli~~l~~~~~~   26 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEGRFV   26 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCC
Confidence            689999999999999999765443

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=97.36  E-value=0.00042  Score=49.27  Aligned_cols=24  Identities=33%  Similarity=0.529  Sum_probs=20.7

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ..++++|++|+|||||++++.+..
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~   25 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRD   25 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCc
Confidence            468999999999999999996543

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.35  E-value=0.00013  Score=57.02  Aligned_cols=25  Identities=36%  Similarity=0.448  Sum_probs=22.1

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.|+++|+|++|||||||+..|..
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~   28 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIP   28 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHH
Confidence            4678999999999999999998853

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=97.35  E-value=0.00041  Score=50.64  Aligned_cols=25  Identities=28%  Similarity=0.526  Sum_probs=21.8

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      |.++++|+.|+|||||++++.+..+
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~   25 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKP   25 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence            6789999999999999999976443

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=97.34  E-value=0.00017  Score=53.03  Aligned_cols=24  Identities=38%  Similarity=0.600  Sum_probs=21.2

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhc
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ..-++++|++|+|||||+++|.+.
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC
Confidence            566999999999999999999653

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.34  E-value=0.0002  Score=60.38  Aligned_cols=36  Identities=36%  Similarity=0.600  Sum_probs=28.8

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh------cCCcccccccE
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN------TSVVKSEFGGI  120 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~------~~v~~~e~G~I  120 (139)
                      ++.||+.|.|..|+||||||+.|..      ..++.+|+|.+
T Consensus         2 ~~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v   43 (318)
T PRK11537          2 NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEV   43 (318)
T ss_pred             CccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCc
Confidence            3679999999999999999999864      24556777743

>KOG0062|consensus

Probab=97.34  E-value=0.00013  Score=66.01  Aligned_cols=31  Identities=26%  Similarity=0.415  Sum_probs=28.3

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++...+|+-+++.|+||+||||||++|+.
T Consensus        98 ~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   98 KANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             CCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            4567899999999999999999999999966

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=97.34  E-value=0.00014  Score=58.36  Aligned_cols=22  Identities=55%  Similarity=0.773  Sum_probs=19.7

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++|+||+|||||||+++|..
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~   22 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLA   22 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999863

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.33  E-value=0.0001  Score=55.28  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             CCCEEEEEeecCCchhHHHHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +.|+++|+|++||||||+.+.|.
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999999996

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=97.33  E-value=0.00046  Score=51.83  Aligned_cols=44  Identities=30%  Similarity=0.482  Sum_probs=30.2

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcC-Ccc-cccccEEEEeeEEE
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTS-VVK-SEFGGITQHIGAFV  128 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~-v~~-~e~G~Itq~i~ay~  128 (139)
                      ...+-++++|++|+|||||+++|.+.. +.. ...-+.|+++..|.
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~   67 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE   67 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe
Confidence            366779999999999999999997632 211 11223566666655

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.32  E-value=0.00013  Score=56.01  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=19.3

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++|.|++|||||||.++|.+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~   21 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIE   21 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999965

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd00880 Era_like Era (E

Probab=97.31  E-value=0.00027  Score=49.18  Aligned_cols=39  Identities=28%  Similarity=0.382  Sum_probs=26.2

Q ss_pred             EEeecCCchhHHHHHHHhcCCc-ccccccEEEEeeEEEEE
Q psy4669          92 IMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVGF  130 (139)
Q Consensus        92 ImG~~g~GKTTLL~~L~~~~v~-~~e~G~Itq~i~ay~V~  130 (139)
                      |+|+.|+|||||++.|.+.... .....+.+.....+...
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~   40 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWE   40 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEE
Confidence            5899999999999999664443 33344455555544443

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0054|consensus

Probab=97.31  E-value=0.00021  Score=70.40  Aligned_cols=44  Identities=23%  Similarity=0.381  Sum_probs=37.0

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      -.+.++.+++|..++|+|++||||||||.+|  .|=.+...|.+.-
T Consensus       537 L~dIn~~i~~G~lvaVvG~vGsGKSSLL~Ai--LGEm~~~sG~v~v  580 (1381)
T KOG0054|consen  537 LKDINFEIKKGQLVAVVGPVGSGKSSLLSAI--LGEMPKLSGSVAV  580 (1381)
T ss_pred             ccceeEEecCCCEEEEECCCCCCHHHHHHHH--hcCcccccceEEE
Confidence            4578899999999999999999999999999  6666666675544

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.29  E-value=0.00023  Score=49.96  Aligned_cols=21  Identities=38%  Similarity=0.531  Sum_probs=19.4

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.|.|++|+||||+.+.|+.
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999965

...

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.29  E-value=0.00021  Score=52.65  Aligned_cols=32  Identities=31%  Similarity=0.572  Sum_probs=25.6

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      |+++|..++|||||+|+|.+..+.+...+..|
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T   32 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCT   32 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTT
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccc
Confidence            68999999999999999998777776655433

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=97.29  E-value=0.00037  Score=63.61  Aligned_cols=43  Identities=33%  Similarity=0.481  Sum_probs=31.6

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCcc--c-ccccEEEEeeEEEEEe
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVVK--S-EFGGITQHIGAFVGFL  131 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~~--~-e~G~Itq~i~ay~V~~  131 (139)
                      |++++||+|||||||+++|.+.+...  . ...+||..+|...+..
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~   47 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQ   47 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEec
Confidence            78999999999999999996532221  1 2358999988665543

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.28  E-value=0.00016  Score=57.16  Aligned_cols=33  Identities=24%  Similarity=0.234  Sum_probs=28.6

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+.++....++++.|+||||+|||||++.+.+
T Consensus        19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~   51 (204)
T cd03282          19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL   51 (204)
T ss_pred             EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            345677888889999999999999999999863

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd04163 Era Era subfamily

Probab=97.28  E-value=0.0002  Score=50.78  Aligned_cols=26  Identities=35%  Similarity=0.569  Sum_probs=22.4

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ...++++|+.|+|||||++.+.+..+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~   28 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKI   28 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCce
Confidence            46799999999999999999976543

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.28  E-value=0.00014  Score=60.85  Aligned_cols=25  Identities=36%  Similarity=0.526  Sum_probs=21.8

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++-+++|.|++|||||||.+.|.+
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~   84 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQA   84 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999999843

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>smart00053 DYNc Dynamin, GTPase

Probab=97.27  E-value=0.00025  Score=57.88  Aligned_cols=36  Identities=19%  Similarity=0.399  Sum_probs=29.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      ..|.++++|++|+||||+|++|.+..+.+...|.+|
T Consensus        25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t   60 (240)
T smart00053       25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT   60 (240)
T ss_pred             CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCccc
Confidence            446899999999999999999966555677777776

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01889 SelB_euk SelB subfamily

Probab=97.27  E-value=0.00027  Score=53.80  Aligned_cols=43  Identities=35%  Similarity=0.501  Sum_probs=29.4

Q ss_pred             EEEEeecCCchhHHHHHHHhc---C-C---cccccccEEEEeeEEEEEee
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNT---S-V---VKSEFGGITQHIGAFVGFLY  132 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~---~-v---~~~e~G~Itq~i~ay~V~~~  132 (139)
                      ++++||+|+|||||++++...   . +   ......++|.+++.+.+.+.
T Consensus         3 i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~   52 (192)
T cd01889           3 VGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVD   52 (192)
T ss_pred             EEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEec
Confidence            789999999999999999541   0 1   11113357777776666554

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=97.27  E-value=0.00022  Score=59.41  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=27.5

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG  118 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G  118 (139)
                      .+..+..+.|.|++|+|||||+++|  .+..+...+
T Consensus       140 ~v~~~~~ili~G~tGsGKTTll~al--~~~~~~~~~  173 (308)
T TIGR02788       140 AIASRKNIIISGGTGSGKTTFLKSL--VDEIPKDER  173 (308)
T ss_pred             HhhCCCEEEEECCCCCCHHHHHHHH--HccCCcccc
Confidence            4567899999999999999999999  555555444

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=97.25  E-value=0.00031  Score=58.63  Aligned_cols=98  Identities=17%  Similarity=0.154  Sum_probs=62.1

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeeeCCCCcc-ccCC-CCCccc-CCCC
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSV-ADDS-NGKDVE-RRPP   77 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~~~~~~~-~~~~-~~~d~~-~~~~   77 (139)
                      ||..+||+++|++..-|-++.  .|.   .++     + .+.+..||..||+.+.+.-..... .... ...+.. .-++
T Consensus        42 ltq~~lA~~~gvs~~~i~~~E--~g~---~~p-----s-~~~l~~ia~~l~v~~~~l~~~~~~~~~~~~~l~~~l~~l~~  110 (309)
T PRK08154         42 MSRKVLAQASGVSERYLAQLE--SGQ---GNV-----S-ILLLRRVARALGCSLADLLGDVDTSSPDWLLIRELLEQASP  110 (309)
T ss_pred             CCHHHHHHHHCcCHHHHHHHH--CCC---CCC-----C-HHHHHHHHHHhCCCHHHHhCCCCCCChHHHHHHHHHhcCCH
Confidence            688999999999999887766  331   122     2 237889999999986654422110 0000 000000 0000


Q ss_pred             -------------CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          78 -------------ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        78 -------------~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                                   -.......++..+.++|++||||||+-+.|+.
T Consensus       111 ~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~  155 (309)
T PRK08154        111 AQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAA  155 (309)
T ss_pred             HHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHH
Confidence                         01245678889999999999999999999863

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.24  E-value=0.0003  Score=58.30  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=27.6

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      ..++|+|++|||||||+++|  ++...+..|.+.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l--~~~~~~~~G~i~  143 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDL--ARILSTGISQLG  143 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHH--hCccCCCCceEE
Confidence            68999999999999999999  777777777653

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK04213 GTP-binding protein; Provisional

Probab=97.23  E-value=0.00066  Score=51.64  Aligned_cols=40  Identities=28%  Similarity=0.452  Sum_probs=28.0

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEee
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIG  125 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~  125 (139)
                      +.+.++++|+.|+|||||+++|.+........-+.|.+..
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~   47 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPN   47 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCce
Confidence            4567999999999999999999764433222234555443

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=97.23  E-value=7.4e-05  Score=55.13  Aligned_cols=20  Identities=25%  Similarity=0.559  Sum_probs=0.0

Q ss_pred             EEEEEeecCCchhHHHHHHH
Q psy4669          89 VVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~  108 (139)
                      +++|+|+|||||||+|++|.
T Consensus         1 i~viiG~N~sGKS~il~ai~   20 (303)
T PF13304_consen    1 INVIIGPNGSGKSNILEAIY   20 (303)
T ss_dssp             --------------------
T ss_pred             CCcccccccccccccccccc
Confidence            57899999999999999994

>KOG0056|consensus

Probab=97.22  E-value=0.00024  Score=64.67  Aligned_cols=43  Identities=26%  Similarity=0.349  Sum_probs=36.4

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++.|..++++||||+||||+++.|  .++.....|.|+
T Consensus       554 l~disF~v~pGktvAlVG~SGaGKSTimRlL--fRffdv~sGsI~  596 (790)
T KOG0056|consen  554 LSDISFTVQPGKTVALVGPSGAGKSTIMRLL--FRFFDVNSGSIT  596 (790)
T ss_pred             eecceEEecCCcEEEEECCCCCchhHHHHHH--HHHhhccCceEE
Confidence            4578999999999999999999999999999  555666666665

>cd04124 RabL2 RabL2 subfamily

Probab=97.21  E-value=0.0011  Score=48.70  Aligned_cols=24  Identities=17%  Similarity=0.369  Sum_probs=20.1

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      ++++|+.|+|||||++.+......
T Consensus         3 i~vvG~~~vGKTsli~~~~~~~~~   26 (161)
T cd04124           3 IILLGDSAVGKSKLVERFLMDGYE   26 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCC
Confidence            689999999999999998654443

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.19  E-value=0.0003  Score=58.14  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.9

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+++++|++|+|||||++.|.+
T Consensus       161 ~k~~~~~G~sg~GKSTlin~l~~  183 (287)
T cd01854         161 GKTSVLVGQSGVGKSTLINALLP  183 (287)
T ss_pred             cceEEEECCCCCCHHHHHHHHhc
Confidence            47999999999999999999954

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.19  E-value=0.00021  Score=58.96  Aligned_cols=20  Identities=30%  Similarity=0.591  Sum_probs=18.6

Q ss_pred             EEEEEeecCCchhHHHHHHH
Q psy4669          89 VVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~  108 (139)
                      +++|+|++|||||||+++|.
T Consensus         1 iigI~G~sGsGKSTl~~~L~   20 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLT   20 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999994

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=97.17  E-value=0.0004  Score=56.23  Aligned_cols=31  Identities=23%  Similarity=0.326  Sum_probs=27.7

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+..+..++++-++|||||||||||-.+++
T Consensus        17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAG   47 (248)
T COG4138          17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAG   47 (248)
T ss_pred             ccccccccceEEEEECCCCccHHHHHHHHhC
Confidence            3577889999999999999999999999944

>cd00154 Rab Rab family

Probab=97.16  E-value=0.0014  Score=46.10  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      ++++|+.|+|||||++++.+....
T Consensus         3 i~~~G~~~~GKStl~~~l~~~~~~   26 (159)
T cd00154           3 IVLIGDSGVGKTSLLLRFVDGKFD   26 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHhCcCC
Confidence            789999999999999999764433

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04123 Rab21 Rab21 subfamily

Probab=97.16  E-value=0.001  Score=47.67  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=21.2

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      ++++|+.|+|||||++.+....+..
T Consensus         3 i~i~G~~~~GKStli~~l~~~~~~~   27 (162)
T cd04123           3 VVLLGEGRVGKTSLVLRYVENKFNE   27 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCC
Confidence            6899999999999999997655443

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PRK00098 GTPase RsgA; Reviewed

Probab=97.16  E-value=0.00041  Score=57.57  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=21.7

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.+++++|++|+|||||+++|.+
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~  186 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAP  186 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999999954

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.15  E-value=0.00045  Score=52.71  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=26.0

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEE
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVG  129 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V  129 (139)
                      -+.++|++|||||||+++|.+...    .=.-||.+..|..
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~----~~~KTq~i~~~~~   39 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI----RYKKTQAIEYYDN   39 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC----CcCccceeEeccc
Confidence            467999999999999999965322    1234666665543

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.15  E-value=0.00031  Score=60.86  Aligned_cols=30  Identities=37%  Similarity=0.457  Sum_probs=26.6

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+..+.++.+++++||+|+||||++..|..
T Consensus       130 ~~~~~~~g~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        130 EDALMERGGVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             CCccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999999999999964

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.14  E-value=0.00025  Score=56.57  Aligned_cols=21  Identities=33%  Similarity=0.510  Sum_probs=19.0

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++|.|++|||||||.+.|.+
T Consensus         1 IigI~G~sGSGKTTla~~L~~   21 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQA   21 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHH
Confidence            589999999999999999954

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=97.14  E-value=0.0004  Score=53.98  Aligned_cols=23  Identities=26%  Similarity=0.570  Sum_probs=20.8

Q ss_pred             CCCEEEEEeecCCchhHHHHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .+.+++|.||||+|||+|+++|.
T Consensus        23 ~~~~~~i~G~NGsGKS~ileAi~   45 (220)
T PF02463_consen   23 SPGLNVIVGPNGSGKSNILEAIE   45 (220)
T ss_dssp             TSSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHH
Confidence            35699999999999999999995

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.13  E-value=0.0003  Score=52.07  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=19.0

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++|+||+|+|||||++.|.+
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~   21 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLE   21 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            368999999999999999975

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd04167 Snu114p Snu114p subfamily

Probab=97.12  E-value=0.0003  Score=54.81  Aligned_cols=22  Identities=55%  Similarity=0.809  Sum_probs=19.5

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++|+||+|||||||+++|..
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~   22 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIE   22 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHH
Confidence            3589999999999999999864

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=97.10  E-value=0.00044  Score=53.38  Aligned_cols=21  Identities=24%  Similarity=0.477  Sum_probs=19.7

Q ss_pred             CEEEEEeecCCchhHHHHHHH
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ++.+|.|+||+|||++|++|.
T Consensus        23 ~~~~i~G~NGsGKSnil~Ai~   43 (178)
T cd03239          23 SFNAIVGPNGSGKSNIVDAIC   43 (178)
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            499999999999999999985

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.09  E-value=0.00042  Score=53.55  Aligned_cols=21  Identities=24%  Similarity=0.616  Sum_probs=19.2

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -++++|++|+|||||+++|.+
T Consensus         3 kI~i~G~~g~GKSSLin~L~g   23 (197)
T cd04104           3 NIAVTGESGAGKSSFINALRG   23 (197)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999965

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04169 RF3 RF3 subfamily

Probab=97.08  E-value=0.00056  Score=56.09  Aligned_cols=23  Identities=39%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.++|+||+|||||||+++|..
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~   24 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLL   24 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Confidence            47899999999999999999963

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd03112 CobW_like The function of this protein family is unkown

Probab=97.08  E-value=0.00053  Score=51.75  Aligned_cols=22  Identities=41%  Similarity=0.706  Sum_probs=20.2

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      |++.++|++|+|||||++.+.+
T Consensus         1 p~~~l~G~~GsGKTtl~~~l~~   22 (158)
T cd03112           1 PVTVLTGFLGAGKTTLLNHILT   22 (158)
T ss_pred             CEEEEEECCCCCHHHHHHHHHh
Confidence            7899999999999999998864

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.06  E-value=0.00044  Score=54.09  Aligned_cols=21  Identities=33%  Similarity=0.513  Sum_probs=19.6

Q ss_pred             CEEEEEeecCCchhHHHHHHH
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .+++|+|+||+||||||++|.
T Consensus        22 gl~~i~G~NGsGKStll~ai~   42 (198)
T cd03276          22 RVNFIVGNNGSGKSAILTALT   42 (198)
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            488999999999999999996

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.06  E-value=0.00046  Score=47.95  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=19.6

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      +.|+|+.|+|||||++.|.+....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~~~   25 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGEFP   25 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS--
T ss_pred             EEEECcCCCCHHHHHHHHhcCCCc
Confidence            689999999999999999864433

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.06  E-value=0.00039  Score=54.25  Aligned_cols=26  Identities=31%  Similarity=0.406  Sum_probs=23.0

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ....|+++++|+.|+|||||++.+..
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~   44 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLID   44 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999999854

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.05  E-value=0.00048  Score=52.69  Aligned_cols=31  Identities=45%  Similarity=0.808  Sum_probs=24.2

Q ss_pred             CEEEEEeecCCchhHHHHHHHh-------cCCcccccc
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN-------TSVVKSEFG  118 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~-------~~v~~~e~G  118 (139)
                      ||+.|.|..|+|||||++.+.+       ..++..|+|
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g   38 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFG   38 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEcccc
Confidence            8999999999999999999872       234556666

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd01866 Rab2 Rab2 subfamily

Probab=97.05  E-value=0.0013  Score=48.56  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=20.6

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCC
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      -++++|+.|+|||||++.+.+..+
T Consensus         6 ki~vvG~~~vGKSsLl~~l~~~~~   29 (168)
T cd01866           6 KYIIIGDTGVGKSCLLLQFTDKRF   29 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            478999999999999999976443

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=97.05  E-value=0.00023  Score=59.63  Aligned_cols=18  Identities=44%  Similarity=0.628  Sum_probs=16.9

Q ss_pred             EEeecCCchhHHHHHHHh
Q psy4669          92 IMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        92 ImG~~g~GKTTLL~~L~~  109 (139)
                      |+|+|||||||||++|.+
T Consensus         1 l~G~nGsGKSTLl~~iaG   18 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAG   18 (325)
T ss_pred             CcCCCCCCHHHHHHHHHC
Confidence            589999999999999987

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK08233 hypothetical protein; Provisional

Probab=97.04  E-value=0.00053  Score=51.16  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=21.5

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.+++|.|++|+|||||.+.|..
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~   25 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTH   25 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            468999999999999999999964

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=97.04  E-value=0.00044  Score=50.42  Aligned_cols=20  Identities=45%  Similarity=0.713  Sum_probs=18.1

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|+.|+|||||++.|.+
T Consensus         2 i~~vG~~~~GKstLi~~l~~   21 (167)
T cd04160           2 VLILGLDNAGKTTFLEQLKT   21 (167)
T ss_pred             EEEEecCCCCHHHHHHHHhh
Confidence            68999999999999999954

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>KOG0927|consensus

Probab=97.04  E-value=0.0004  Score=63.18  Aligned_cols=45  Identities=22%  Similarity=0.333  Sum_probs=37.6

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEee
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIG  125 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~  125 (139)
                      +.++-+....-++++||||+||||||+.+  ++...+..|.+.-|.+
T Consensus       408 ~l~fgid~~srvAlVGPNG~GKsTLlKl~--~gdl~p~~G~vs~~~H  452 (614)
T KOG0927|consen  408 KLNFGIDLDSRVALVGPNGAGKSTLLKLI--TGDLQPTIGMVSRHSH  452 (614)
T ss_pred             hhhcccCcccceeEecCCCCchhhhHHHH--hhcccccccccccccc
Confidence            35677888899999999999999999999  8888888887665544

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.04  E-value=0.00037  Score=64.98  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=20.1

Q ss_pred             CCEEEEEeecCCchhHHHHHHH
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +.+++|+||||+||||||++|.
T Consensus        23 ~~~~~i~G~NGsGKS~ll~ai~   44 (1179)
T TIGR02168        23 KGITGIVGPNGCGKSNIVDAIR   44 (1179)
T ss_pred             CCcEEEECCCCCChhHHHHHHH
Confidence            6699999999999999998864

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>cd01860 Rab5_related Rab5-related subfamily

Probab=97.04  E-value=0.0015  Score=47.29  Aligned_cols=24  Identities=17%  Similarity=0.375  Sum_probs=20.5

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      ++++|+.|+|||||++++.+..+.
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~~~   27 (163)
T cd01860           4 LVLLGDSSVGKSSLVLRFVKNEFS   27 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCC
Confidence            689999999999999999765443

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.03  E-value=0.00053  Score=51.32  Aligned_cols=22  Identities=50%  Similarity=0.783  Sum_probs=19.2

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      |++.|+|+.++|||||++.|..
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~   22 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLIN   22 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999988853

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.03  E-value=0.00048  Score=45.33  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=18.8

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++++|++|+||||+.+.|..
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~   21 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAE   21 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999954

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=97.02  E-value=0.00094  Score=51.29  Aligned_cols=43  Identities=16%  Similarity=0.223  Sum_probs=30.2

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCcccc--cccEEEEeeEEEEEe
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVVKSE--FGGITQHIGAFVGFL  131 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~~~e--~G~Itq~i~ay~V~~  131 (139)
                      -++++|++|+|||||+|.|.+.......  ..+.|++...+....
T Consensus         2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~   46 (196)
T cd01852           2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW   46 (196)
T ss_pred             EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE
Confidence            4789999999999999999765544333  235666655554433

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd00879 Sar1 Sar1 subfamily

Probab=97.01  E-value=0.0014  Score=49.22  Aligned_cols=24  Identities=33%  Similarity=0.571  Sum_probs=20.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +...++++|++|+|||||++++.+
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            345569999999999999999965

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04135 Tc10 TC10 subfamily

Probab=97.01  E-value=0.002  Score=47.39  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=23.8

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      ++++|+.|+|||||++.+.+..........+
T Consensus         3 i~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~   33 (174)
T cd04135           3 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTV   33 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCCCCCce
Confidence            6899999999999999997655544444443

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04106 Rab23_lke Rab23-like subfamily

Probab=97.00  E-value=0.0022  Score=46.36  Aligned_cols=24  Identities=17%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      ++++|+.|+|||||++.+.+....
T Consensus         3 v~~vG~~~~GKTsl~~~~~~~~~~   26 (162)
T cd04106           3 VIVVGNGNVGKSSMIQRFVKGIFT   26 (162)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCC
Confidence            789999999999999999654443

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>COG1162 Predicted GTPases [General function prediction only]

Probab=96.97  E-value=0.00044  Score=58.54  Aligned_cols=25  Identities=24%  Similarity=0.490  Sum_probs=21.9

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .-++.+++++|+||-|||||+|+|.
T Consensus       161 ~l~~~~svl~GqSGVGKSSLiN~L~  185 (301)
T COG1162         161 LLAGKITVLLGQSGVGKSTLINALL  185 (301)
T ss_pred             HhcCCeEEEECCCCCcHHHHHHhhC
Confidence            3456699999999999999999995

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=96.97  E-value=0.00043  Score=54.97  Aligned_cols=29  Identities=24%  Similarity=0.273  Sum_probs=23.2

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.... ++++|+||||+||||||+.+..
T Consensus        24 ~~l~~~~-~~~~l~Gpn~sGKstllr~i~~   52 (216)
T cd03284          24 TELDPER-QILLITGPNMAGKSTYLRQVAL   52 (216)
T ss_pred             EEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence            3343333 8999999999999999999853

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>cd00157 Rho Rho (Ras homology) family

Probab=96.97  E-value=0.0019  Score=47.00  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             EEEEeecCCchhHHHHHHHhcCC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      +.++|+.|+|||||++.+.+...
T Consensus         3 i~i~G~~~~GKSsli~~l~~~~~   25 (171)
T cd00157           3 IVVVGDGAVGKTCLLISYTTGKF   25 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCC
Confidence            67999999999999999976554

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=96.97  E-value=0.00047  Score=54.22  Aligned_cols=19  Identities=42%  Similarity=0.704  Sum_probs=17.8

Q ss_pred             EEEEeecCCchhHHHHHHH
Q psy4669          90 VTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~  108 (139)
                      ++++||+|||||||+++|.
T Consensus         2 v~i~Gh~~~GKttL~~~ll   20 (219)
T cd01883           2 LVVIGHVDAGKSTTTGHLL   20 (219)
T ss_pred             EEEecCCCCChHHHHHHHH
Confidence            7899999999999999885

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=96.97  E-value=0.00044  Score=55.25  Aligned_cols=32  Identities=22%  Similarity=0.348  Sum_probs=27.5

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +.+.++....++++.|+|||++||||||+.+.
T Consensus        20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~   51 (222)
T cd03285          20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG   51 (222)
T ss_pred             EeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence            34566777789999999999999999999965

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.96  E-value=0.0012  Score=52.80  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=22.5

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +|.++++.||||.|||||+++|+.
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~   26 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLE   26 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            788999999999999999999975

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=96.96  E-value=0.00079  Score=49.12  Aligned_cols=20  Identities=40%  Similarity=0.674  Sum_probs=17.5

Q ss_pred             EEeecCCchhHHHHHHHhcC
Q psy4669          92 IMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        92 ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++|++|+|||||+++|.+..
T Consensus         1 iiG~~~~GKStll~~l~~~~   20 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAK   20 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCC
Confidence            58999999999999996654

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=96.96  E-value=0.00073  Score=48.45  Aligned_cols=32  Identities=28%  Similarity=0.504  Sum_probs=21.8

Q ss_pred             EEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669          92 IMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH  123 (139)
Q Consensus        92 ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~  123 (139)
                      ++|++|+|||||++++.+.........++|.+
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~   32 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVE   32 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccc
Confidence            58999999999999996643333333343433

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.96  E-value=0.00063  Score=53.01  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=22.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.++.|+||+|+|||||.+.|..
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~   26 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLE   26 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHh
Confidence            3678999999999999999999965

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=96.96  E-value=0.00067  Score=51.07  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ..+.++.|+||||+||||+++++.
T Consensus        19 ~~~~~~~i~G~NgsGKS~~l~~i~   42 (162)
T cd03227          19 GEGSLTIITGPNGSGKSTILDAIG   42 (162)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHH
Confidence            344699999999999999999974

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.96  E-value=0.00078  Score=50.65  Aligned_cols=26  Identities=35%  Similarity=0.469  Sum_probs=23.3

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.+.++++.|+.|+|||||.+.+.+
T Consensus        19 l~~~~~i~l~G~lGaGKTtl~~~l~~   44 (133)
T TIGR00150        19 LDFGTVVLLKGDLGAGKTTLVQGLLQ   44 (133)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            45678999999999999999999975

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=96.96  E-value=0.00055  Score=53.33  Aligned_cols=20  Identities=40%  Similarity=0.552  Sum_probs=18.3

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++|+||.|||||||+++|..
T Consensus         2 i~iiG~~~~GKStL~~~Ll~   21 (208)
T cd04166           2 FLTCGSVDDGKSTLIGRLLY   21 (208)
T ss_pred             EEEEECCCCCHHHHHHHHHH
Confidence            78999999999999999863

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.96  E-value=0.00077  Score=50.86  Aligned_cols=26  Identities=31%  Similarity=0.326  Sum_probs=22.9

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+++.++.+.|++|+||||+.+.|..
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~   29 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYE   29 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            45778999999999999999999853

>PLN02796 D-glycerate 3-kinase

Probab=96.95  E-value=0.00054  Score=59.02  Aligned_cols=25  Identities=36%  Similarity=0.325  Sum_probs=21.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++-+++|.|++|||||||++.|.+
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~  122 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVY  122 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHH
Confidence            3556799999999999999999943

>cd01894 EngA1 EngA1 subfamily

Probab=96.94  E-value=0.00085  Score=47.79  Aligned_cols=40  Identities=23%  Similarity=0.219  Sum_probs=25.3

Q ss_pred             EEEeecCCchhHHHHHHHhcCCcc-cccccEEEEeeEEEEE
Q psy4669          91 TIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQHIGAFVGF  130 (139)
Q Consensus        91 ~ImG~~g~GKTTLL~~L~~~~v~~-~e~G~Itq~i~ay~V~  130 (139)
                      +++|+.|+|||||++.|.+..... ....+.|+..-.+.+.
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~   41 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAE   41 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEE
Confidence            479999999999999997643221 2223445544444443

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01884 EF_Tu EF-Tu subfamily

Probab=96.94  E-value=0.00058  Score=53.44  Aligned_cols=21  Identities=52%  Similarity=0.792  Sum_probs=19.1

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++||+|||||||.++|..
T Consensus         4 ni~iiGh~~~GKTTL~~~Ll~   24 (195)
T cd01884           4 NVGTIGHVDHGKTTLTAAITK   24 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999964

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.94  E-value=0.00054  Score=64.59  Aligned_cols=25  Identities=24%  Similarity=0.476  Sum_probs=23.3

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .-..+|.+|.|++|+||||||++|.
T Consensus        22 ~f~~gi~lI~G~nGsGKSSIldAI~   46 (908)
T COG0419          22 LFDSGIFLIVGPNGAGKSSILDAIT   46 (908)
T ss_pred             cCCCCeEEEECCCCCcHHHHHHHHH
Confidence            5688999999999999999999996

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.93  E-value=0.00081  Score=48.25  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=18.9

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.++|+.|+|||||.+.|..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999873

...

>cd01890 LepA LepA subfamily

Probab=96.93  E-value=0.00074  Score=49.88  Aligned_cols=22  Identities=45%  Similarity=0.744  Sum_probs=19.8

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++++|++|+|||||++++.+
T Consensus         1 rni~~vG~~~~GKssL~~~l~~   22 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLE   22 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHH
Confidence            3589999999999999999965

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01895 EngA2 EngA2 subfamily

Probab=96.93  E-value=0.00075  Score=48.48  Aligned_cols=23  Identities=30%  Similarity=0.615  Sum_probs=20.5

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +..++++|+.|+|||||+++|.+
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~   24 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLG   24 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhC
Confidence            45689999999999999999965

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01868 Rab11_like Rab11-like

Probab=96.92  E-value=0.0022  Score=46.71  Aligned_cols=24  Identities=21%  Similarity=0.470  Sum_probs=20.4

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCC
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      -++++|+.|+|||||++++.+...
T Consensus         5 ki~vvG~~~~GKSsli~~l~~~~~   28 (165)
T cd01868           5 KIVLIGDSGVGKSNLLSRFTRNEF   28 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999975443

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>COG3910 Predicted ATPase [General function prediction only]

Probab=96.92  E-value=0.00071  Score=54.95  Aligned_cols=26  Identities=38%  Similarity=0.611  Sum_probs=23.5

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .-=+.||+.|+|.||+||||||-+|+
T Consensus        33 LeF~apIT~i~GENGsGKSTLLEaiA   58 (233)
T COG3910          33 LEFRAPITFITGENGSGKSTLLEAIA   58 (233)
T ss_pred             ccccCceEEEEcCCCccHHHHHHHHH
Confidence            34578999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
2lkc_A	178	Free B.St If2-G2 Length = 178		9e-15
3izy_P	537	Mammalian Mitochondrial Translation Initiation Fact		3e-14
1zo1_I	501	If2, If1, And Trna Fitted To Cryo-Em Data Of E. Col		1e-12
1g7r_A	594	X-Ray Structure Of Translation Initiation Factor If		2e-11
1g7s_A	594	X-Ray Structure Of Translation Initiation Factor If		3e-11

>pdb|2LKC|A Chain A, Free B.St If2-G2 Length = 178

Iteration: 1
 Score = 75.5 bits (184), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 81  SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAF 127
           S +++RPPVVTIMGHVDHGKTTLLD +R++ V + E GGITQHIGA+
Sbjct: 2   SHMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAY 48

>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2 Length = 537

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/45 (75%), Positives = 36/45 (80%)
Query: 84  MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFV 128
           + R PVVTIMGHVDHGKTTLLD LR T V   E GGITQHIGAF+
Sbjct: 1   IPRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFL 45

>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s Initiation Complex Length = 501

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 35/42 (83%)
Query: 86  RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAF 127
           R PVVTIMGHVDHGKT+LL+ +R+T V   E GGITQHIGA+
Sbjct: 3   RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAY 44

>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Length = 594

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)
Query: 86  RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA 126
           R P+V+++GHVDHGKTTLLD +R ++V   E GGITQHIGA
Sbjct: 4   RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGA 44

>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B Complexed With Gdp Length = 594

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 34/41 (82%)
Query: 86  RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA 126
           R P+V+++GHVDHGKTTLLD +R ++V   E GGITQHIGA
Sbjct: 4   RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGA 44

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	6e-31
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	2e-26
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	5e-26
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	7e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	9e-05

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} Length = 537

 Score =  114 bits (287), Expect = 6e-31
 Identities = 34/44 (77%), Positives = 35/44 (79%)

Query: 84  MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAF 127
           + R PVVTIMGHVDHGKTTLLD LR T V   E GGITQHIGAF
Sbjct: 1   IPRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAF 44

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Length = 178

 Score = 96.2 bits (240), Expect = 2e-26
 Identities = 32/45 (71%), Positives = 40/45 (88%)

Query: 83  LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAF 127
           +++RPPVVTIMGHVDHGKTTLLD +R++ V + E GGITQHIGA+
Sbjct: 4   MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAY 48

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} Length = 501

 Score =  100 bits (252), Expect = 5e-26
 Identities = 30/41 (73%), Positives = 34/41 (82%)

Query: 86  RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA 126
           R PVVTIMGHVDHGKT+LL+ +R+T V   E GGITQHIGA
Sbjct: 3   RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGA 43

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Length = 594

 Score =  100 bits (251), Expect = 7e-26
 Identities = 27/44 (61%), Positives = 35/44 (79%)

Query: 83  LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA 126
           +  R P+V+++GHVDHGKTTLLD +R ++V   E GGITQHIGA
Sbjct: 1   MKIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGA 44

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 41/153 (26%)

Query: 3   LKDLAKSM--GVDCDHLYE----------------------VMMYVDNSVNYDRPSSVIY 38
           ++D+ KS+    + DH+                        V  +V+  +  +      Y
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN------Y 91

Query: 39  DF---QVIIDIIQKSGMKYMVINPTNSVADDSN---GKDVERRPPADP--SVLMK-RP-P 88
            F    +  +  Q S M  M I   + + +D+      +V R  P       L++ RP  
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 89  VVTIMGHVDHGKTTLL-DTLRNTSVVKSEFGGI 120
            V I G +  GKT +  D   +  V       I
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* Length = 842

 Score = 40.0 bits (93), Expect = 9e-05
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)

Query: 83  LMKRPPV---VTIMGHVDHGKTTLLDTL 107
           LM +      ++++ HVDHGK+TL D+L
Sbjct: 12  LMDKVTNVRNMSVIAHVDHGKSTLTDSL 39

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.83
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.82
1g6h_A	257	High-affinity branched-chain amino acid transport	98.81
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.79
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.77
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.77
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.77
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.76
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.75
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.75
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.74
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.74
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.74
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.72
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.72
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.72
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.71
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.71
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.71
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.68
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.68
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.66
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.66
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.66
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.65
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.65
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.64
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.64
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.64
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.64
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.64
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.63
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.63
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.61
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.58
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.54
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.54
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.52
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.52
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.5
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.49
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.48
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.4
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.37
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.36
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.36
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.36
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.35
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.35
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.34
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.31
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.3
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.29
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.27
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.26
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.26
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.24
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.22
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.21
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.2
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.18
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.18
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.17
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.17
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.14
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.13
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.13
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.12
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.12
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.11
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.09
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.09
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.06
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.05
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.04
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.04
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.02
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.02
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.01
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.0
2og2_A	359	Putative signal recognition particle receptor; nuc	97.99
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.99
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.99
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.99
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.99
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.96
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.96
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.95
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.95
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.95
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.95
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.94
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.93
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.92
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.91
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.91
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.91
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.88
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.88
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.87
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.87
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.86
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.85
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.85
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.84
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.83
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.83
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.81
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.8
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.8
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.8
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.8
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.77
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.74
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.72
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.72
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.72
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.7
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.7
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.69
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.69
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.68
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.68
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.67
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.66
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.66
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.65
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.64
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.64
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.64
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.63
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.63
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.59
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.58
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.58
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.54
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.53
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.5
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.49
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.47
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.46
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.46
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.45
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	97.44
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.42
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.4
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.4
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.4
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.4
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.4
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.38
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.38
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.38
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.37
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.37
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.37
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.36
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.36
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.36
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.36
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.35
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.34
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.34
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.34
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.34
1wb1_A	482	Translation elongation factor SELB; selenocysteine	97.33
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.32
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.31
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.31
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.3
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.29
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.28
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.26
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.25
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.25
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.25
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.25
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.24
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.24
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.23
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.23
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.22
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.21
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.21
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.21
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.2
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.2
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.2
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.2
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.19
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.19
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.18
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.18
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.18
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.17
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.17
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.16
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.16
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.16
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.15
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.15
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.15
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.15
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.15
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.13
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.13
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.12
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.12
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.11
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.11
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.11
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.1
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.1
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.08
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.08
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.08
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.07
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.07
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.06
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.05
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.05
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.05
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.04
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.04
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.03
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.03
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.02
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.02
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.01
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.01
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.01
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.99
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.99
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.99
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.99
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.98
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.98
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.98
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.97
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	96.97
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.96
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	96.96
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.96
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.96
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.96
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.95
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	96.95
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.95
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.95
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.95
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.94
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.94
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.94
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.94
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.94
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.94
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.94
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.94
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.94
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.94
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.93
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	96.93
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	96.93
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	96.92
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.92
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.91
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.9
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.9
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.9
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.88
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.87
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.87
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.86
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.86
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.86
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	96.85
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.84
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.83
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.83
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.83
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.83
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.82
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.82
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.82
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.81
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.81
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.81
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.8
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.8
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.79
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.79
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.79
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.77
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.77
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.76
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.75
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.75
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.74
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.74
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.74
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.72
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.72
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.71
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.71
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.69
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.69
1via_A	175	Shikimate kinase; structural genomics, transferase	96.67
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.67
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.67
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.66
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.66
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.66
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.65
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.64
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.63
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.62
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.62
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.61
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.6
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.6
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.6
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.6
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.6
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.58
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.57
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.57
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.56
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.56
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.55
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.55
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.55
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.54
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.54
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.53
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	96.52
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.52
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.51
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.51
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.5
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.5
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.49
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.49
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.49
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.48
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.47
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.46
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.46
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.45
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	96.45
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.45
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.43
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	96.43
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.42
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.41
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.4
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.4
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.39
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.39
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.38
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	96.37
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.37
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.36
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.33
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.33
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	96.32
3bos_A	242	Putative DNA replication factor; P-loop containing	96.32
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	96.32
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.32
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	96.28
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.28
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.27
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.27
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.27
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.27
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.27
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.27
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.26
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.25
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.23
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.19
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.18
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.17
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.16
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.15
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	96.15
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.14
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.14
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.14
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.13
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	96.13
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.13
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	96.11
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.11
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.1
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.1
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	96.1
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.09
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.09
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.08
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.06
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.05
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	96.05
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.04
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.03
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.03
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.02
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	96.02
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.01
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.0
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	95.99
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	95.98
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.96
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	95.94
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.92
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.92
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.89
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.89
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.86
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.85
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.83
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	95.83
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.8
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.79
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	95.76
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.76
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.76
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.75
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.73
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.73
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.73
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.7
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.69
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.69
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.68
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.67
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.66
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	95.63
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.62
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.62
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.6
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	95.59
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.58
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	95.57
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.56
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.55
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	95.53
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.49
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.49
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.47
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.46
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	95.46
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.46
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.44
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.4
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	95.39
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	95.38
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.38
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.36
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.35
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.33
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.33
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	95.32
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.29
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.28
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	95.24
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	95.23
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.2
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.2
2fna_A	357	Conserved hypothetical protein; structural genomic	95.17
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.15
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.12
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.11
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.1
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.09
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.09
1nd9_A	49	Translation initiation factor IF-2; NMR {Escherich	95.02
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.98
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	94.97
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.96
3ice_A	422	Transcription termination factor RHO; transcriptio	94.95
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	94.94
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.94
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	94.85
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.85
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	94.82
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.79
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.77
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	94.75
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.7
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.64
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	94.63
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	94.62
1uxc_A	65	FRUR (1-57), fructose repressor; DNA-binding prote	94.52
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.5
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.49

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.83  E-value=1.4e-09  Score=85.66  Aligned_cols=42  Identities=26%  Similarity=0.405  Sum_probs=38.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++++++|+|||||||||||++|  .++.++..|.|.
T Consensus        22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l--~Gl~~p~~G~I~   63 (235)
T 3tif_A           22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNII--GCLDKPTEGEVY   63 (235)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred             EeeeEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCceEEE
Confidence            357899999999999999999999999999  888888888875

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.82  E-value=1.6e-09  Score=84.63  Aligned_cols=42  Identities=29%  Similarity=0.318  Sum_probs=38.1

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      +.++.++++.+++|+|||||||||||++|  +++.++..|.|.-
T Consensus        22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l--~Gl~~p~~G~i~~   63 (224)
T 2pcj_A           22 GISLSVKKGEFVSIIGASGSGKSTLLYIL--GLLDAPTEGKVFL   63 (224)
T ss_dssp             EEEEEEETTCEEEEEECTTSCHHHHHHHH--TTSSCCSEEEEEE
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEEE
Confidence            57899999999999999999999999999  8888888888753

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.81  E-value=1.7e-09  Score=86.08  Aligned_cols=43  Identities=26%  Similarity=0.416  Sum_probs=38.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+|||||||||||++|  +++.++..|.|+-
T Consensus        24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l--~Gl~~p~~G~i~~   66 (257)
T 1g6h_A           24 DGVSISVNKGDVTLIIGPNGSGKSTLINVI--TGFLKADEGRVYF   66 (257)
T ss_dssp             EEECCEEETTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred             eeeEEEEeCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEEE
Confidence            357899999999999999999999999999  8888888888753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.79  E-value=2.1e-09  Score=85.99  Aligned_cols=41  Identities=27%  Similarity=0.403  Sum_probs=37.8

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++.+++|+|||||||||||++|  +++.++..|.|.
T Consensus        24 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l--~Gl~~p~~G~i~   64 (262)
T 1b0u_A           24 GVSLQARAGDVISIIGSSGSGKSTFLRCI--NFLEKPSEGAII   64 (262)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence            57899999999999999999999999999  888888888875

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.77  E-value=2.6e-09  Score=84.17  Aligned_cols=42  Identities=29%  Similarity=0.437  Sum_probs=38.0

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      +.++.++++.+++|+|||||||||||++|  .++.++..|.|+-
T Consensus        24 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~i~~   65 (240)
T 1ji0_A           24 GIDLKVPRGQIVTLIGANGAGKTTTLSAI--AGLVRAQKGKIIF   65 (240)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCceEEE
Confidence            57899999999999999999999999999  8888888887753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.77  E-value=2.7e-09  Score=85.74  Aligned_cols=41  Identities=32%  Similarity=0.426  Sum_probs=38.0

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++++++|+||||||||||+++|  +++.++..|.|.
T Consensus        29 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l--~Gl~~p~~G~I~   69 (266)
T 4g1u_C           29 DVSLHIASGEMVAIIGPNGAGKSTLLRLL--TGYLSPSHGECH   69 (266)
T ss_dssp             EEEEEEETTCEEEEECCTTSCHHHHHHHH--TSSSCCSSCEEE
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCcEEE
Confidence            57899999999999999999999999999  888888888875

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.77  E-value=2.3e-09  Score=86.83  Aligned_cols=42  Identities=29%  Similarity=0.438  Sum_probs=38.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+||||||||||+++|  +++.++..|.|+
T Consensus        25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l--~Gl~~p~~G~I~   66 (275)
T 3gfo_A           25 KGINMNIKRGEVTAILGGNGVGKSTLFQNF--NGILKPSSGRIL   66 (275)
T ss_dssp             EEEEEEEETTSEEEEECCTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred             EeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HcCCCCCCeEEE
Confidence            357899999999999999999999999999  888888888775

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.76  E-value=3e-09  Score=83.29  Aligned_cols=43  Identities=23%  Similarity=0.380  Sum_probs=39.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+|||||||||||++|  .++.++..|.|.-
T Consensus        25 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~~   67 (229)
T 2pze_A           25 KDINFKIERGQLLAVAGSTGAGKTSLLMMI--MGELEPSEGKIKH   67 (229)
T ss_dssp             EEEEEEEETTCEEEEECCTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCcCCccEEEE
Confidence            357899999999999999999999999999  8888888888764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.75  E-value=3.4e-09  Score=85.18  Aligned_cols=41  Identities=27%  Similarity=0.385  Sum_probs=37.8

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++.+++|+|||||||||||++|  +++.++..|.|+
T Consensus        42 ~vsl~i~~Gei~~liG~NGsGKSTLlk~l--~Gl~~p~~G~I~   82 (263)
T 2olj_A           42 GINVHIREGEVVVVIGPSGSGKSTFLRCL--NLLEDFDEGEII   82 (263)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred             eeEEEEcCCCEEEEEcCCCCcHHHHHHHH--HcCCCCCCcEEE
Confidence            57899999999999999999999999999  888888888875

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.75  E-value=3.8e-09  Score=83.23  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=37.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|||||||||||++|  .++.++..|.|.
T Consensus        19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~   60 (243)
T 1mv5_A           19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEIT   60 (243)
T ss_dssp             EEEEEEECTTEEEEEECCTTSSHHHHHHHH--TTSSCCSBSCEE
T ss_pred             EEeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence            357899999999999999999999999999  888888888875

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.74  E-value=3.2e-09  Score=83.02  Aligned_cols=41  Identities=32%  Similarity=0.408  Sum_probs=37.8

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++.+++|+|||||||||||++|  +++.++..|.|.
T Consensus        27 ~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l--~Gl~~p~~G~I~   67 (214)
T 1sgw_A           27 RITMTIEKGNVVNFHGPNGIGKTTLLKTI--STYLKPLKGEII   67 (214)
T ss_dssp             EEEEEEETTCCEEEECCTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCeEEE
Confidence            57899999999999999999999999999  888888888876

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.74  E-value=3.9e-09  Score=84.48  Aligned_cols=41  Identities=24%  Similarity=0.367  Sum_probs=37.7

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++.+++|+|||||||||||++|  +++.++..|.|.
T Consensus        33 ~vsl~i~~Gei~~l~G~NGsGKSTLlk~l--~Gl~~p~~G~I~   73 (256)
T 1vpl_A           33 GISFEIEEGEIFGLIGPNGAGKTTTLRII--STLIKPSSGIVT   73 (256)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence            57899999999999999999999999999  888888888875

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.74  E-value=3.8e-09  Score=83.78  Aligned_cols=42  Identities=24%  Similarity=0.363  Sum_probs=38.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|||||||||||++|  .++.++..|.|.
T Consensus        26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~I~   67 (247)
T 2ff7_A           26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVL   67 (247)
T ss_dssp             EEEEEEEETTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCcEEE
Confidence            357899999999999999999999999999  888888888875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.72  E-value=4.4e-09  Score=85.12  Aligned_cols=43  Identities=23%  Similarity=0.231  Sum_probs=38.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+|||||||||||++|  +++.++..|.|.-
T Consensus        38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l--~Gl~~p~~G~I~~   80 (279)
T 2ihy_A           38 KKISWQIAKGDKWILYGLNGAGKTTLLNIL--NAYEPATSGTVNL   80 (279)
T ss_dssp             EEEEEEEETTCEEEEECCTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred             EeeeEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCCeEEEE
Confidence            357899999999999999999999999999  8888888887753

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.72  E-value=3.7e-09  Score=83.30  Aligned_cols=43  Identities=21%  Similarity=0.353  Sum_probs=38.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+|||||||||||++|  .++.++..|.|.-
T Consensus        22 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~I~~   64 (237)
T 2cbz_A           22 NGITFSIPEGALVAVVGQVGCGKSSLLSAL--LAEMDKVEGHVAI   64 (237)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHHHH--TTCSEEEEEEEEE
T ss_pred             eeeEEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCceEEE
Confidence            357899999999999999999999999999  8888888887754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.72  E-value=4.9e-09  Score=83.86  Aligned_cols=42  Identities=19%  Similarity=0.427  Sum_probs=38.1

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      +.++.++++.+++|+|||||||||||++|  .++.++..|.|.-
T Consensus        25 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~i--~Gl~~p~~G~I~~   66 (266)
T 2yz2_A           25 NVSLVINEGECLLVAGNTGSGKSTLLQIV--AGLIEPTSGDVLY   66 (266)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCCcEEEE
Confidence            57899999999999999999999999999  8888888888753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.71  E-value=4e-09  Score=88.88  Aligned_cols=41  Identities=32%  Similarity=0.451  Sum_probs=37.6

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++++++|+|||||||||||++|  +|+.++..|.|.
T Consensus        22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~i--aGl~~p~~G~I~   62 (359)
T 3fvq_A           22 DISLSLDPGEILFIIGASGCGKTTLLRCL--AGFEQPDSGEIS   62 (359)
T ss_dssp             EEEEEECTTCEEEEEESTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred             eeEEEEcCCCEEEEECCCCchHHHHHHHH--hcCCCCCCcEEE
Confidence            57899999999999999999999999999  888888888775

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.71  E-value=5.3e-09  Score=84.11  Aligned_cols=42  Identities=17%  Similarity=0.235  Sum_probs=38.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|||||||||||++|  .++.++..|.|.
T Consensus        36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l--~Gl~~p~~G~I~   77 (271)
T 2ixe_A           36 QGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVL   77 (271)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred             EeeEEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCCEEE
Confidence            357899999999999999999999999999  888888888875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.71  E-value=5.4e-09  Score=83.30  Aligned_cols=41  Identities=24%  Similarity=0.424  Sum_probs=38.2

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++.+++|+|||||||||||++|  +++.++..|.|+
T Consensus        23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l--~Gl~~p~~G~I~   63 (253)
T 2nq2_C           23 QLNFDLNKGDILAVLGQNGCGKSTLLDLL--LGIHRPIQGKIE   63 (253)
T ss_dssp             EEEEEEETTCEEEEECCSSSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            57899999999999999999999999999  888888999886

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.68  E-value=6.8e-09  Score=82.74  Aligned_cols=41  Identities=22%  Similarity=0.352  Sum_probs=37.0

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      +.++.++++.+++|+|||||||||||++|  +++.++. |.|+-
T Consensus        18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l--~Gl~~p~-G~i~~   58 (249)
T 2qi9_C           18 PLSGEVRAGEILHLVGPNGAGKSTLLARM--AGMTSGK-GSIQF   58 (249)
T ss_dssp             EEEEEEETTCEEEEECCTTSSHHHHHHHH--TTSSCCE-EEEEE
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCC-eEEEE
Confidence            57899999999999999999999999999  8888888 87753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.68  E-value=6.5e-09  Score=82.34  Aligned_cols=40  Identities=23%  Similarity=0.464  Sum_probs=36.0

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.+++ .+++|+|||||||||||++|  +++.++..|.|.
T Consensus        17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l--~Gl~~p~~G~i~   56 (240)
T 2onk_A           17 NVDFEMGR-DYCVLLGPTGAGKSVFLELI--AGIVKPDRGEVR   56 (240)
T ss_dssp             EEEEEECS-SEEEEECCTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred             eeEEEECC-EEEEEECCCCCCHHHHHHHH--hCCCCCCceEEE
Confidence            57889999 99999999999999999999  777888888775

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.66  E-value=6.5e-09  Score=88.32  Aligned_cols=41  Identities=22%  Similarity=0.318  Sum_probs=37.4

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++++++|+|||||||||||++|  +|+.++..|.|.
T Consensus        21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~i--aGl~~p~~G~I~   61 (381)
T 3rlf_A           21 DINLDIHEGEFVVFVGPSGCGKSTLLRMI--AGLETITSGDLF   61 (381)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred             eeEEEECCCCEEEEEcCCCchHHHHHHHH--HcCCCCCCeEEE
Confidence            57899999999999999999999999999  778888888775

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.66  E-value=6.4e-09  Score=87.43  Aligned_cols=42  Identities=21%  Similarity=0.362  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++++++|+|||||||||||++|  +++.++..|.|.
T Consensus        32 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~i--aGl~~p~~G~I~   73 (355)
T 1z47_A           32 RGVSFQIREGEMVGLLGPSGSGKTTILRLI--AGLERPTKGDVW   73 (355)
T ss_dssp             EEEEEEEETTCEEEEECSTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred             eeeEEEECCCCEEEEECCCCCcHHHHHHHH--hCCCCCCccEEE
Confidence            357899999999999999999999999999  777888888775

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.66  E-value=2.2e-09  Score=93.87  Aligned_cols=48  Identities=63%  Similarity=0.892  Sum_probs=43.9

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY  132 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~  132 (139)
                      +|+|++++|||+|||||||+++|++..+...+.++|||++++|++...
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~   49 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE   49 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC
Confidence            689999999999999999999999888888889999999999987654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.65  E-value=8.2e-09  Score=86.79  Aligned_cols=41  Identities=32%  Similarity=0.340  Sum_probs=37.1

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++.+++|+|||||||||||++|  +|+.++..|.|.
T Consensus        21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~i--aGl~~p~~G~I~   61 (359)
T 2yyz_A           21 GVSFEVKDGEFVALLGPSGCGKTTTLLML--AGIYKPTSGEIY   61 (359)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred             eeEEEEcCCCEEEEEcCCCchHHHHHHHH--HCCCCCCccEEE
Confidence            57899999999999999999999999999  777888888775

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.65  E-value=8.8e-09  Score=86.68  Aligned_cols=42  Identities=26%  Similarity=0.407  Sum_probs=37.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|||||||||||++|  +|+.++..|.|.
T Consensus        20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~i--aGl~~p~~G~I~   61 (362)
T 2it1_A           20 NNINLKIKDGEFMALLGPSGSGKSTLLYTI--AGIYKPTSGKIY   61 (362)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred             EeeEEEECCCCEEEEECCCCchHHHHHHHH--hcCCCCCceEEE
Confidence            357899999999999999999999999999  777888888775

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.64  E-value=7.5e-09  Score=87.26  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=37.3

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++.+++|+|||||||||||++|  +|+.++..|.|.
T Consensus        21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~i--aGl~~p~~G~I~   61 (372)
T 1g29_1           21 EMSLEVKDGEFMILLGPSGCGKTTTLRMI--AGLEEPSRGQIY   61 (372)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred             eeEEEEcCCCEEEEECCCCcHHHHHHHHH--HcCCCCCccEEE
Confidence            57899999999999999999999999999  778888888775

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.64  E-value=8.1e-09  Score=87.37  Aligned_cols=42  Identities=17%  Similarity=0.313  Sum_probs=37.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++++++|+||||||||||+++|  .++.++..|.|.
T Consensus        45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i--~GL~~p~~G~I~   86 (366)
T 3tui_C           45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVL   86 (366)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred             EeeEEEEcCCCEEEEEcCCCchHHHHHHHH--hcCCCCCceEEE
Confidence            367899999999999999999999999999  777888888775

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.64  E-value=1e-08  Score=83.57  Aligned_cols=43  Identities=23%  Similarity=0.380  Sum_probs=38.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+|||||||||||++|  .|+.++..|.|.-
T Consensus        55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l--~Gl~~p~~G~I~~   97 (290)
T 2bbs_A           55 KDINFKIERGQLLAVAGSTGAGKTSLLMMI--MGELEPSEGKIKH   97 (290)
T ss_dssp             EEEEEEECTTCEEEEEESTTSSHHHHHHHH--TTSSCEEEEEEEC
T ss_pred             EeeEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCcEEEE
Confidence            357899999999999999999999999999  8888888887754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.64  E-value=7.4e-09  Score=82.00  Aligned_cols=41  Identities=27%  Similarity=0.314  Sum_probs=35.3

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCC--cccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSV--VKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v--~~~e~G~It  121 (139)
                      +.++.++++.+++|+||||||||||+++|  .++  .++..|.|.
T Consensus        21 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l--~Gl~~~~p~~G~I~   63 (250)
T 2d2e_A           21 GVNLVVPKGEVHALMGPNGAGKSTLGKIL--AGDPEYTVERGEIL   63 (250)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHH--HTCTTCEEEEEEEE
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCceEEE
Confidence            57899999999999999999999999999  555  566677764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.64  E-value=9.8e-09  Score=86.69  Aligned_cols=41  Identities=22%  Similarity=0.321  Sum_probs=36.1

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++.+++|+|||||||||||++|  +++.++..|.|.
T Consensus        29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~i--aGl~~p~~G~I~   69 (372)
T 1v43_A           29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMI--AGLEEPTEGRIY   69 (372)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred             eeEEEECCCCEEEEECCCCChHHHHHHHH--HcCCCCCceEEE
Confidence            57899999999999999999999999999  667777777664

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.63  E-value=5.4e-09  Score=87.51  Aligned_cols=41  Identities=17%  Similarity=0.292  Sum_probs=37.4

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++++++|+|||||||||||++|  +|+.++..|.|.
T Consensus        23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~i--aGl~~p~~G~I~   63 (353)
T 1oxx_K           23 NVNINIENGERFGILGPSGAGKTTFMRII--AGLDVPSTGELY   63 (353)
T ss_dssp             EEEEEECTTCEEEEECSCHHHHHHHHHHH--HTSSCCSEEEEE
T ss_pred             ceEEEECCCCEEEEECCCCCcHHHHHHHH--hCCCCCCceEEE
Confidence            57899999999999999999999999999  778888888775

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.63  E-value=7.9e-09  Score=86.50  Aligned_cols=41  Identities=22%  Similarity=0.327  Sum_probs=37.3

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++.+++|+|||||||||||++|  +|+.++..|.|.
T Consensus        18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~i--aGl~~p~~G~I~   58 (348)
T 3d31_A           18 NLSLKVESGEYFVILGPTGAGKTLFLELI--AGFHVPDSGRIL   58 (348)
T ss_dssp             EEEEEECTTCEEEEECCCTHHHHHHHHHH--HTSSCCSEEEEE
T ss_pred             eeEEEEcCCCEEEEECCCCccHHHHHHHH--HcCCCCCCcEEE
Confidence            57899999999999999999999999999  778888888775

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.61  E-value=1.4e-08  Score=80.99  Aligned_cols=41  Identities=20%  Similarity=0.344  Sum_probs=35.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|||||||||||++|  .++.++ .|.|.
T Consensus        37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l--~Gl~~~-~G~I~   77 (260)
T 2ghi_A           37 KSINFFIPSGTTCALVGHTGSGKSTIAKLL--YRFYDA-EGDIK   77 (260)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHHHH--TTSSCC-EEEEE
T ss_pred             EeeEEEECCCCEEEEECCCCCCHHHHHHHH--hccCCC-CeEEE
Confidence            357899999999999999999999999999  676665 57764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.58  E-value=1.4e-08  Score=81.35  Aligned_cols=42  Identities=29%  Similarity=0.264  Sum_probs=35.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCC--cccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSV--VKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v--~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|||||||||||++|  +++  ..+..|.|.
T Consensus        37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l--~Gl~~~~p~~G~I~   80 (267)
T 2zu0_C           37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATL--AGREDYEVTGGTVE   80 (267)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHH--HTCTTCEEEEEEEE
T ss_pred             EeeEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCCeEEE
Confidence            357899999999999999999999999999  555  345667664

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.54  E-value=2.1e-08  Score=82.49  Aligned_cols=42  Identities=24%  Similarity=0.287  Sum_probs=38.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+||||||||||+++|  .++..+..|.|+
T Consensus        71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll--~gl~~p~~G~I~  112 (306)
T 3nh6_A           71 QDVSFTVMPGQTLALVGPSGAGKSTILRLL--FRFYDISSGCIR  112 (306)
T ss_dssp             EEEEEEECTTCEEEEESSSCHHHHHHHHHH--TTSSCCSEEEEE
T ss_pred             eeeeEEEcCCCEEEEECCCCchHHHHHHHH--HcCCCCCCcEEE
Confidence            357889999999999999999999999999  888888888775

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.54  E-value=3e-08  Score=79.62  Aligned_cols=39  Identities=28%  Similarity=0.394  Sum_probs=35.5

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++ +.+++|+|||||||||||++|  +++. +..|.|.
T Consensus        23 ~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l--~Gl~-p~~G~I~   61 (263)
T 2pjz_A           23 NINLEVN-GEKVIILGPNGSGKTTLLRAI--SGLL-PYSGNIF   61 (263)
T ss_dssp             EEEEEEC-SSEEEEECCTTSSHHHHHHHH--TTSS-CCEEEEE
T ss_pred             eeeEEEC-CEEEEEECCCCCCHHHHHHHH--hCCC-CCCcEEE
Confidence            5789999 999999999999999999999  8888 8888875

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.52  E-value=2.4e-08  Score=88.67  Aligned_cols=47  Identities=57%  Similarity=0.889  Sum_probs=39.1

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL  131 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~  131 (139)
                      .|.|+++|+||+|||||||+++|++..+...+.|++||++|++.+..
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~   49 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPM   49 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEee
Confidence            57899999999999999999999988777888899999999998864

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.52  E-value=6.9e-09  Score=91.45  Aligned_cols=48  Identities=73%  Similarity=1.039  Sum_probs=44.2

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL  131 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~  131 (139)
                      ++|+|++++|||+|||||||+++|++..+...+.+++||++++|++.+
T Consensus         1 i~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~   48 (537)
T 3izy_P            1 IPRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL   48 (537)
T ss_dssp             CCCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEe
Confidence            368999999999999999999999988888889999999999998876

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.50  E-value=3e-08  Score=84.20  Aligned_cols=41  Identities=24%  Similarity=0.378  Sum_probs=34.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++++++|+|||||||||||++|  +++.+ ..|.|.
T Consensus        38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~i--aGl~~-~~G~I~   78 (390)
T 3gd7_A           38 ENISFSISPGQRVGLLGRTGSGKSTLLSAF--LRLLN-TEGEIQ   78 (390)
T ss_dssp             EEEEEEECTTCEEEEEESTTSSHHHHHHHH--HTCSE-EEEEEE
T ss_pred             eceeEEEcCCCEEEEECCCCChHHHHHHHH--hCCCC-CCeEEE
Confidence            457899999999999999999999999999  55555 556553

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.49  E-value=2.5e-08  Score=74.53  Aligned_cols=30  Identities=23%  Similarity=0.312  Sum_probs=27.5

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.++++.+++++||+|+|||||+++|.+
T Consensus        26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             HHHCCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cccccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            567889999999999999999999999965

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.48  E-value=3.9e-08  Score=75.77  Aligned_cols=32  Identities=31%  Similarity=0.288  Sum_probs=23.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.++.++++.+++|+||||||||||+++|.+
T Consensus        14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             --------CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCceecCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            46789999999999999999999999999965

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.40  E-value=1.6e-07  Score=82.19  Aligned_cols=43  Identities=21%  Similarity=0.333  Sum_probs=38.5

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.+++|++++|+||||||||||+++|  .++.++..|.|.
T Consensus       359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l--~g~~~p~~G~i~  401 (582)
T 3b5x_A          359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLF--TRFYDVDSGSIC  401 (582)
T ss_pred             cccceEEECCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCCEEE
Confidence            3468899999999999999999999999999  788888888775

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.37  E-value=2.4e-07  Score=81.23  Aligned_cols=39  Identities=26%  Similarity=0.357  Sum_probs=35.0

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      ++.++++++++|+|+||||||||+++|  +++.++..|.|+
T Consensus       288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l--~Gl~~p~~G~i~  326 (538)
T 3ozx_A          288 NGEAKEGEIIGILGPNGIGKTTFARIL--VGEITADEGSVT  326 (538)
T ss_dssp             CEEEETTCEEEEECCTTSSHHHHHHHH--TTSSCCSBCCEE
T ss_pred             cceECCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCcEEE
Confidence            345689999999999999999999999  888888999885

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.36  E-value=1.5e-07  Score=82.41  Aligned_cols=42  Identities=19%  Similarity=0.298  Sum_probs=37.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++|++++|+||||||||||+++|  .++.++..|.|.
T Consensus       360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l--~g~~~p~~G~i~  401 (582)
T 3b60_A          360 RNINLKIPAGKTVALVGRSGSGKSTIASLI--TRFYDIDEGHIL  401 (582)
T ss_dssp             EEEEEEECTTCEEEEEECTTSSHHHHHHHH--TTTTCCSEEEEE
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHH--hhccCCCCCeEE
Confidence            356889999999999999999999999999  888888888775

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.36  E-value=1.4e-07  Score=69.85  Aligned_cols=27  Identities=19%  Similarity=0.367  Sum_probs=25.0

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHH
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDT  106 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~  106 (139)
                      .++.++++++++++|+||||||||+++
T Consensus         2 vsl~i~~gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            2 MKLTIPELSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEEEESSEEEEEECCTTSCHHHHHHH
T ss_pred             ccccCCCCEEEEEECCCCCCHHHHHHH
Confidence            467899999999999999999999994

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.36  E-value=2e-07  Score=70.62  Aligned_cols=28  Identities=29%  Similarity=0.325  Sum_probs=23.1

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++++++++|+||||||||||+++|.+
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999999999999965

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.35  E-value=5.2e-08  Score=75.59  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=30.8

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      ++++.+++|+|||||||||||++|  +++ ++..|.|.
T Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l--~Gl-~p~~G~I~   53 (208)
T 3b85_A           19 IDTNTIVFGLGPAGSGKTYLAMAK--AVQ-ALQSKQVS   53 (208)
T ss_dssp             HHHCSEEEEECCTTSSTTHHHHHH--HHH-HHHTTSCS
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHH--hcC-CCcCCeee
Confidence            588999999999999999999999  556 77788874

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.35  E-value=2.1e-07  Score=81.93  Aligned_cols=43  Identities=26%  Similarity=0.342  Sum_probs=38.9

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      -.+.++.++++++++|+||||||||||+++|  .++.++..|.|+
T Consensus       371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l--~g~~~p~~G~i~  413 (598)
T 3qf4_B          371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLL--MRFYDVDRGQIL  413 (598)
T ss_dssp             CCSEEEECCTTCEEEEECCTTSSTTHHHHHH--TTSSCCSEEEEE
T ss_pred             ccceEEEEcCCCEEEEECCCCCcHHHHHHHH--hcCcCCCCeEEE
Confidence            3467889999999999999999999999999  888888888875

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.31  E-value=3.1e-07  Score=68.07  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=23.8

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ...++.+++|+||+|||||||+++|.+.
T Consensus         3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            3 AMNKANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence            4467899999999999999999999763

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.30  E-value=3e-07  Score=80.41  Aligned_cols=38  Identities=32%  Similarity=0.391  Sum_probs=33.2

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++++++++|+|+||||||||+++|  .++.++..|.|.
T Consensus       307 ~~i~~Ge~~~i~G~NGsGKSTLlk~l--~Gl~~p~~G~i~  344 (538)
T 1yqt_A          307 GEIKKGEVIGIVGPNGIGKTTFVKML--AGVEEPTEGKIE  344 (538)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHH--HTSSCCSBCCCC
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence            33579999999999999999999999  777888888775

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.29  E-value=1.5e-07  Score=82.43  Aligned_cols=42  Identities=21%  Similarity=0.353  Sum_probs=38.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++++++|+||||||||||+++|  .+..++..|.|+
T Consensus       358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l--~g~~~p~~G~i~  399 (578)
T 4a82_A          358 KDINLSIEKGETVAFVGMSGGGKSTLINLI--PRFYDVTSGQIL  399 (578)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHTTT--TTSSCCSEEEEE
T ss_pred             eeeEEEECCCCEEEEECCCCChHHHHHHHH--hcCCCCCCcEEE
Confidence            356789999999999999999999999999  888888888875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.27  E-value=2.8e-07  Score=70.58  Aligned_cols=32  Identities=22%  Similarity=0.231  Sum_probs=22.2

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ..+.++.++++.+++|+||||||||||+++|.
T Consensus        17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             -----CCEECCCEEEEECSCC----CHHHHHH
T ss_pred             cCCCCcccCCCCEEEEECCCCCCHHHHHHHHH
Confidence            34578899999999999999999999999996

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.26  E-value=5.2e-07  Score=78.87  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=32.9

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG  119 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~  119 (139)
                      +.+ .+.++++++|+|+|||||||||++|  +|+..+..|.
T Consensus        40 ~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l--~Gl~~p~~G~   77 (538)
T 1yqt_A           40 RLP-VVKEGMVVGIVGPNGTGKSTAVKIL--AGQLIPNLCG   77 (538)
T ss_dssp             CCC-CCCTTSEEEEECCTTSSHHHHHHHH--HTSSCCCTTT
T ss_pred             CcC-cCCCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCCc
Confidence            456 7899999999999999999999999  6667666666

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.26  E-value=4.4e-07  Score=80.73  Aligned_cols=37  Identities=27%  Similarity=0.418  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++++++|+||||+||||||++|  +++.++..|.|.
T Consensus       378 ~v~~Gei~~i~G~NGsGKSTLlk~l--~Gl~~p~~G~I~  414 (607)
T 3bk7_A          378 EIRKGEVIGIVGPNGIGKTTFVKML--AGVEEPTEGKVE  414 (607)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHH--HTSSCCSBSCCC
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHH--hcCCCCCceEEE
Confidence            3689999999999999999999999  777888888774

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.24  E-value=2.6e-07  Score=81.20  Aligned_cols=42  Identities=21%  Similarity=0.466  Sum_probs=38.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++++++|+||||||||||+++|  .++.++..|.|+
T Consensus       360 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l--~g~~~~~~G~i~  401 (587)
T 3qf4_A          360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLI--PRLIDPERGRVE  401 (587)
T ss_dssp             EEEEEEECTTCEEEEECSSSSSHHHHHHTT--TTSSCCSEEEEE
T ss_pred             eceEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCccCCCcEEE
Confidence            356789999999999999999999999999  888888888875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.22  E-value=5.6e-07  Score=78.90  Aligned_cols=36  Identities=28%  Similarity=0.453  Sum_probs=31.9

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      ..+++++++|+||||||||||+++|  +++..+..|.|
T Consensus        21 ~~~~Gei~gLiGpNGaGKSTLlkiL--~Gl~~p~~G~i   56 (538)
T 3ozx_A           21 TPKNNTILGVLGKNGVGKTTVLKIL--AGEIIPNFGDP   56 (538)
T ss_dssp             CCCTTEEEEEECCTTSSHHHHHHHH--TTSSCCCTTCT
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCCcc
Confidence            4568899999999999999999999  88888888866

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.21  E-value=9e-07  Score=66.24  Aligned_cols=36  Identities=25%  Similarity=0.352  Sum_probs=28.9

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG  118 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G  118 (139)
                      -++++.+++|+||||||||||+++|.+....++..|
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g   56 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEG   56 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence            688999999999999999999999965434433333

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.20  E-value=6e-07  Score=69.70  Aligned_cols=32  Identities=19%  Similarity=0.327  Sum_probs=24.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.++.++++.+++|+|++|||||||+++|.+
T Consensus        16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             -------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999999999999976

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.18  E-value=1.1e-06  Score=78.10  Aligned_cols=39  Identities=26%  Similarity=0.264  Sum_probs=33.7

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      +.+ .++++.+++|+|+||+||||||++|  +|+..+..|.+
T Consensus       110 ~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL--~Gll~p~~G~~  148 (607)
T 3bk7_A          110 RLP-IVKDGMVVGIVGPNGTGKTTAVKIL--AGQLIPNLCED  148 (607)
T ss_dssp             CCC-CCCTTSEEEEECCTTSSHHHHHHHH--TTSSCCCTTTT
T ss_pred             CCC-CCCCCCEEEEECCCCChHHHHHHHH--hCCCCCCCCcc
Confidence            455 7899999999999999999999999  77777777763

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.18  E-value=2.9e-07  Score=80.29  Aligned_cols=38  Identities=16%  Similarity=0.177  Sum_probs=30.5

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG  119 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~  119 (139)
                      +.++.+++ .+++|+|||||||||||++|.+  +..+..|.
T Consensus        22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~G--l~~p~~G~   59 (483)
T 3euj_A           22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVT--ALIPDLTL   59 (483)
T ss_dssp             EEEEECCS-SEEEEECCTTSSHHHHHHHHHH--HHCCCTTT
T ss_pred             ceEEEEcc-ceEEEECCCCCcHHHHHHHHhc--CCCCCCCE
Confidence            56788899 9999999999999999999954  44444443

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.17  E-value=8.2e-07  Score=79.11  Aligned_cols=36  Identities=25%  Similarity=0.355  Sum_probs=32.5

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      .+.++.+++|+||||+||||||++|  +++..+..|.|
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL--~Gll~P~~G~i  134 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKIL--AGKQKPNLGRF  134 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHH--HTSSCCCTTTT
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHH--hcCCCCCCceE
Confidence            5679999999999999999999999  77888888876

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.16  E-value=3.8e-07  Score=78.68  Aligned_cols=37  Identities=30%  Similarity=0.198  Sum_probs=30.3

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG  118 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G  118 (139)
                      .++.++++++++|+|+||||||||+++|.  ++..+..|
T Consensus       131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~--Gl~~p~~G  167 (460)
T 2npi_A          131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLC--SYALKFNA  167 (460)
T ss_dssp             HHHHSSSCCCEEEEESTTSSHHHHHHHHH--HTTHHHHC
T ss_pred             CceEeCCCCEEEEECCCCCCHHHHHHHHh--CcccccCC
Confidence            46778899999999999999999999994  44444444

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.14  E-value=5.6e-07  Score=84.38  Aligned_cols=43  Identities=23%  Similarity=0.367  Sum_probs=39.0

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH  123 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~  123 (139)
                      +.++.+.++.+++|+|+||+|||||+++|  +|+..+..|.|.-+
T Consensus       691 dVSl~I~~GeivaIiGpNGSGKSTLLklL--aGll~P~sG~I~~~  733 (986)
T 2iw3_A          691 DINFQCSLSSRIAVIGPNGAGKSTLINVL--TGELLPTSGEVYTH  733 (986)
T ss_dssp             EEEEEEETTCEEEECSCCCHHHHHHHHHH--TTSSCCSEEEEEEC
T ss_pred             ccEEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCceEEEEc
Confidence            46788999999999999999999999999  88888888988764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.13  E-value=8.9e-07  Score=73.51  Aligned_cols=42  Identities=24%  Similarity=0.228  Sum_probs=34.7

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      +.++.++++.+++|+|++|||||||+++|  .+..++..|.|+-
T Consensus       167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l--~~~~~~~~g~I~i  208 (361)
T 2gza_A          167 FLRRAVQLERVIVVAGETGSGKTTLMKAL--MQEIPFDQRLITI  208 (361)
T ss_dssp             HHHHHHHTTCCEEEEESSSSCHHHHHHHH--HTTSCTTSCEEEE
T ss_pred             HHHHHHhcCCEEEEECCCCCCHHHHHHHH--HhcCCCCceEEEE
Confidence            34567889999999999999999999999  6667767776653

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.13  E-value=6.5e-07  Score=73.71  Aligned_cols=40  Identities=20%  Similarity=0.174  Sum_probs=34.0

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      ++.++++.+++|+|++|||||||+++|  .+..++..|.|+-
T Consensus       165 ~~~i~~g~~v~i~G~~GsGKTTll~~l--~g~~~~~~g~i~i  204 (330)
T 2pt7_A          165 KDGIAIGKNVIVCGGTGSGKTTYIKSI--MEFIPKEERIISI  204 (330)
T ss_dssp             HHHHHHTCCEEEEESTTSCHHHHHHHG--GGGSCTTSCEEEE
T ss_pred             hhhccCCCEEEEECCCCCCHHHHHHHH--hCCCcCCCcEEEE
Confidence            456788999999999999999999999  7777777777653

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.12  E-value=7.8e-07  Score=72.57  Aligned_cols=40  Identities=30%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      ..++...++.+++++|++|+|||||++.|.+  ...+..|.+
T Consensus        92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag--~l~~~~g~V  131 (302)
T 3b9q_A           92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAH--RLKNEGTKV  131 (302)
T ss_dssp             SCCCCSSSCEEEEEECCTTSCHHHHHHHHHH--HHHHTTCCE
T ss_pred             ccccccCCCcEEEEEcCCCCCHHHHHHHHHH--HHHHcCCeE
Confidence            4667788999999999999999999999954  444444444

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.12  E-value=1.8e-06  Score=63.37  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=23.8

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++.+++|+|++|||||||+++|.+
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence            356789999999999999999999955

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.11  E-value=1.4e-06  Score=67.93  Aligned_cols=28  Identities=18%  Similarity=0.278  Sum_probs=22.9

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .-.+++.+++|+||||+|||||+++|.+
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g   38 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLK   38 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3568899999999999999999999965

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.09  E-value=1.5e-06  Score=65.78  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=23.3

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+++.+++|+|+||||||||+++|.+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999999999944

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.06  E-value=8.1e-07  Score=70.92  Aligned_cols=35  Identities=14%  Similarity=0.282  Sum_probs=29.1

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcCCcccc-cccE
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE-FGGI  120 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e-~G~I  120 (139)
                      ++++.+++|+||+|||||||+++|  .+...+. .|.|
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l--~g~~~~~~~G~I   57 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASM--IDYINQTKSYHI   57 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHH--HHHHHHHCCCEE
T ss_pred             hCCCCEEEEECCCCccHHHHHHHH--HHhCCCCCCCEE
Confidence            789999999999999999999999  4455544 5655

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.05  E-value=7.4e-07  Score=76.19  Aligned_cols=29  Identities=31%  Similarity=0.578  Sum_probs=23.6

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG  119 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~  119 (139)
                      +++|+|+||+|||||+++|.  |+..++.|.
T Consensus        71 ~valvG~nGaGKSTLln~L~--Gl~~p~~Gs   99 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLR--GIGNEEEGA   99 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHH--TCCTTSTTS
T ss_pred             EEEEECCCCCcHHHHHHHHh--CCCCccCce
Confidence            99999999999999999994  444444443

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.04  E-value=1e-06  Score=72.54  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=28.2

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++.++++.+++|+||+|+|||||+++|.+
T Consensus       118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             HHHHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             cceEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence            4578899999999999999999999999954

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.04  E-value=2.2e-06  Score=64.14  Aligned_cols=25  Identities=40%  Similarity=0.562  Sum_probs=22.3

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++.+++|+|++|||||||++.|.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            5778999999999999999999965

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.02  E-value=2.5e-06  Score=68.89  Aligned_cols=39  Identities=18%  Similarity=0.302  Sum_probs=28.3

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      +....+.+++++|+||+||||||++|  .+...+..|.|.-
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l--~g~~~~~~G~i~~  202 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAI--NPGLKLRVSEVSE  202 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHH--STTCCCC------
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHh--cccccccccceec
Confidence            34567899999999999999999999  6666666666653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.02  E-value=2.9e-06  Score=62.93  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=22.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+++|+||||+|||||++.|.+
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3578999999999999999999965

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.01  E-value=2.2e-06  Score=64.80  Aligned_cols=25  Identities=36%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++.+++|+||||+|||||++.|.+
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3578999999999999999999965

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.00  E-value=2.4e-06  Score=75.82  Aligned_cols=28  Identities=25%  Similarity=0.347  Sum_probs=26.0

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHH
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLL  104 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL  104 (139)
                      -.++++.++++++++|+||||||||||+
T Consensus        34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             CCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             eeccEEEECCCCEEEEECCCCCCHHHHh
Confidence            4568999999999999999999999997

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.00  E-value=3.7e-06  Score=80.02  Aligned_cols=42  Identities=19%  Similarity=0.317  Sum_probs=37.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++|++++|+|++|||||||+++|  .++.++..|.|.
T Consensus      1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l--~g~~~p~~G~I~ 1091 (1284)
T 3g5u_A         1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVF 1091 (1284)
T ss_dssp             SSCCEEECSSSEEEEECSSSTTHHHHHHHH--TTSSCCSEEEEE
T ss_pred             cceeEEEcCCCEEEEECCCCCCHHHHHHHH--hcCcCCCCCEEE
Confidence            568999999999999999999999999999  888888878764

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.99  E-value=1.9e-06  Score=72.40  Aligned_cols=40  Identities=30%  Similarity=0.408  Sum_probs=31.8

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      ..++.+.++.+++++|+||+|||||++.|.  +...+..|.+
T Consensus       149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~La--g~l~~~~G~V  188 (359)
T 2og2_A          149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLA--HRLKNEGTKV  188 (359)
T ss_dssp             SCCCCSSSSEEEEEECCTTSCHHHHHHHHH--HHHHHTTCCE
T ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHH--hhccccCCEE
Confidence            467778899999999999999999999995  4444444544

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.99  E-value=1.9e-06  Score=75.77  Aligned_cols=41  Identities=24%  Similarity=0.248  Sum_probs=32.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      .+.++.+.++.+++|+|+||||||||+++|.+  ......|.|
T Consensus       284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg--ll~~~~G~V  324 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLAR--QFEQQGKSV  324 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCE
T ss_pred             CCceeeccCCeEEEEECCCcccHHHHHHHHHH--HhhhcCCeE
Confidence            46778889999999999999999999999954  344444444

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.99  E-value=3.5e-06  Score=62.29  Aligned_cols=28  Identities=14%  Similarity=0.172  Sum_probs=23.8

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      .++++.+++|+|++|||||||++.|.+.
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3567899999999999999999999654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.99  E-value=2.9e-06  Score=75.61  Aligned_cols=39  Identities=28%  Similarity=0.444  Sum_probs=32.2

Q ss_pred             CCCccccCC-----CEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669          79 DPSVLMKRP-----PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG  119 (139)
Q Consensus        79 ~~~~~~~r~-----pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~  119 (139)
                      +.++.+.++     ++++|+|+||+|||||+++|  +++.++..|.
T Consensus       365 ~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l--~Gl~~p~~G~  408 (608)
T 3j16_B          365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLL--AGALKPDEGQ  408 (608)
T ss_dssp             SCEEEECCEECCTTCEEEEESCTTSSHHHHHHHH--HTSSCCSBCC
T ss_pred             ceEEEEecCccccceEEEEECCCCCcHHHHHHHH--hcCCCCCCCc
Confidence            455666666     88999999999999999999  7777777774

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.99  E-value=2e-06  Score=69.92  Aligned_cols=36  Identities=36%  Similarity=0.602  Sum_probs=28.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcC------CcccccccEE
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTS------VVKSEFGGIT  121 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~------v~~~e~G~It  121 (139)
                      +.|+++|+|++|+||||||+.|.+..      ++.+++|.|.
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~   44 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS   44 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccC
Confidence            56899999999999999999996532      2366888653

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.96  E-value=2.8e-06  Score=68.69  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=27.7

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCcc--cccccEE
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVK--SEFGGIT  121 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~--~e~G~It  121 (139)
                      .++.+++|+|++|||||||+++|.+  ...  +..|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~--~l~~~~~~G~i~  114 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA--LLSRWPEHRRVE  114 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH--HHTTSTTCCCEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH--HHhhCCCCCeEE
Confidence            6788999999999999999999954  333  4556553

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.96  E-value=3.2e-06  Score=72.42  Aligned_cols=37  Identities=14%  Similarity=0.234  Sum_probs=30.8

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      +.+.++.+++|+|+|||||||||++|  ++...+..|.|
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~I--ag~~~~~~G~i  188 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMM--ARYTRADVIVV  188 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHH--HHHSCCSEEEE
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHH--hcccCCCeEEE
Confidence            78999999999999999999999999  54555555533

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.95  E-value=1.9e-06  Score=70.53  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=24.0

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+++.+++|+|+||||||||+++|.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHh
Confidence            67899999999999999999999954

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.95  E-value=2.6e-06  Score=81.11  Aligned_cols=41  Identities=17%  Similarity=0.276  Sum_probs=37.6

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.++++++++|+|+||||||||+++|  .+..++..|.|+
T Consensus       408 ~isl~i~~G~~~~ivG~sGsGKSTl~~ll--~g~~~~~~G~i~  448 (1284)
T 3g5u_A          408 GLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVS  448 (1284)
T ss_dssp             EEEEEECTTCEEEEECCSSSSHHHHHHHT--TTSSCCSEEEEE
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHH--hCCCCCCCeEEE
Confidence            56789999999999999999999999999  888888888875

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.95  E-value=2e-06  Score=68.91  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=19.2

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++|+|+||+|||||+++|.+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999954

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.95  E-value=2.7e-06  Score=69.51  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=22.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+++++||+|||||||+++|.+
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            3688999999999999999999953

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.94  E-value=4.9e-06  Score=61.48  Aligned_cols=28  Identities=29%  Similarity=0.383  Sum_probs=25.1

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+.++..++++|++|+|||||+++|.+
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            5677889999999999999999999944

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.93  E-value=5.4e-06  Score=59.12  Aligned_cols=48  Identities=67%  Similarity=1.060  Sum_probs=36.5

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL  131 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~  131 (139)
                      .++.+.++++|+.|+|||||++++.+..+......+++.+++.+.+.+
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~   52 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV   52 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe
Confidence            457788999999999999999999876666555556666666555544

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.92  E-value=3.8e-06  Score=69.87  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=29.8

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG  118 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G  118 (139)
                      +.+.++.+++|+|+||+|||||+++|  ++...++.|
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I--~g~~~~~~g  100 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMI--CNGASADII  100 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHH--HHHSCCSEE
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHH--hcCCCCCEE
Confidence            77899999999999999999999999  444555544

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.91  E-value=5.2e-06  Score=60.72  Aligned_cols=29  Identities=17%  Similarity=0.273  Sum_probs=24.3

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+.++ +++|+|+||||||||+++|..
T Consensus        20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           20 VVIPFSKG-FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence            45556655 999999999999999999964

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.91  E-value=3.2e-06  Score=65.34  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=26.0

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh-cCCccccccc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN-TSVVKSEFGG  119 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~-~~v~~~e~G~  119 (139)
                      ++.+++|+|++|||||||+++|.. .++.....|.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~   60 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGH   60 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHH
Confidence            578999999999999999999951 1554444443

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.91  E-value=3.5e-06  Score=69.40  Aligned_cols=39  Identities=15%  Similarity=0.272  Sum_probs=24.8

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      +.+.++.+++++|+||+|||||+++|  .+......|.|..
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L--~g~~~~~~G~I~~  206 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAI--SPELGLRTNEISE  206 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHH--CC-----------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHh--cccccccccceee
Confidence            34567899999999999999999999  6666666666553

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.88  E-value=2.4e-06  Score=70.27  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=30.3

Q ss_pred             CCCccccC--CCEEEEEeecCCchhHHHHHHHhcCCccccc
Q psy4669          79 DPSVLMKR--PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF  117 (139)
Q Consensus        79 ~~~~~~~r--~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~  117 (139)
                      .++..+.+  +..++|+|+||||||||+++|.+  +..+..
T Consensus       160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~g--l~~~~~  198 (365)
T 1lw7_A          160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAA--VFNTTS  198 (365)
T ss_dssp             GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHH--HTTCEE
T ss_pred             hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHH--HhCCCc
Confidence            46777888  99999999999999999999954  444444

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.88  E-value=3.2e-06  Score=69.60  Aligned_cols=30  Identities=30%  Similarity=0.252  Sum_probs=26.7

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+.++++++|+|++|+|||||+++|.+
T Consensus        48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           48 VLPQTGRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             HGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            456778999999999999999999999953

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.87  E-value=7.6e-06  Score=61.33  Aligned_cols=27  Identities=26%  Similarity=0.324  Sum_probs=22.5

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+++++++|+|++|||||||+++|.+
T Consensus        25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           25 TGEPTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999999999964

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.87  E-value=6.8e-06  Score=61.87  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=19.4

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++|+||||||||||+++|.+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999965

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.86  E-value=5.2e-06  Score=72.45  Aligned_cols=38  Identities=16%  Similarity=0.308  Sum_probs=31.9

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++++.+++|+||+||||||||++|  .+..++..|-++
T Consensus       255 ~~v~~g~~i~I~GptGSGKTTlL~aL--~~~i~~~~giit  292 (511)
T 2oap_1          255 LAIEHKFSAIVVGETASGKTTTLNAI--MMFIPPDAKVVS  292 (511)
T ss_dssp             HHHHTTCCEEEEESTTSSHHHHHHHH--GGGSCTTCCEEE
T ss_pred             HHHhCCCEEEEECCCCCCHHHHHHHH--HhhCCCCCCEEE
Confidence            34678999999999999999999999  677777777655

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.85  E-value=6.7e-06  Score=78.50  Aligned_cols=41  Identities=22%  Similarity=0.287  Sum_probs=38.1

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.+++|..++|+||+|||||||++.|  .+...+..|.|+
T Consensus       436 ~isl~i~~G~~vaivG~sGsGKSTll~ll--~~~~~~~~G~I~  476 (1321)
T 4f4c_A          436 GMNLRVNAGQTVALVGSSGCGKSTIISLL--LRYYDVLKGKIT  476 (1321)
T ss_dssp             EEEEEECTTCEEEEEECSSSCHHHHHHHH--TTSSCCSEEEEE
T ss_pred             ceEEeecCCcEEEEEecCCCcHHHHHHHh--ccccccccCccc
Confidence            56889999999999999999999999999  888999999876

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.85  E-value=3.5e-06  Score=74.71  Aligned_cols=30  Identities=27%  Similarity=0.393  Sum_probs=27.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHH
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTL  107 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L  107 (139)
                      .+.++.++++++++|+||||||||||+++|
T Consensus       339 ~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          339 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             CSEEEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred             ccceeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence            467889999999999999999999999865

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.84  E-value=7.7e-06  Score=66.21  Aligned_cols=37  Identities=16%  Similarity=0.172  Sum_probs=29.3

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      ....+.+++++|+||+|||||+++|  . ......|.|..
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l--~-~~~~~~G~i~~  197 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRL--T-GEELRTQEVSE  197 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHH--H-SCCCCCSCC--
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHH--H-HhhCccccccc
Confidence            4456889999999999999999999  5 56666777664

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.83  E-value=2.7e-06  Score=64.97  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=20.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+++|+|+||+|||||++.|.+
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHh
Confidence            46899999999999999999954

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.83  E-value=9.8e-06  Score=61.43  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=23.2

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++++++|+||+|+|||||++.|.+
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHh
Confidence            5789999999999999999999965

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.81  E-value=9.4e-06  Score=60.82  Aligned_cols=29  Identities=28%  Similarity=0.348  Sum_probs=25.2

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ....+++.+++|+|++|||||||.+.|.+
T Consensus        19 ~~~~~~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           19 RLLDQKGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             HHHTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34557899999999999999999999954

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.80  E-value=5e-06  Score=68.75  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=27.9

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      .+++.+++++|++|+|||||+++|.  +...+..|.+
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~La--g~l~~~~g~V  160 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLA--NWLKNHGFSV  160 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHH--HHHHHTTCCE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH--HHHHhcCCEE
Confidence            3689999999999999999999994  4444555544

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.80  E-value=1.1e-05  Score=60.34  Aligned_cols=33  Identities=18%  Similarity=0.151  Sum_probs=22.7

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+.++..+++++++|+|++||||||+.+.|.+
T Consensus        15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             ---------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            446788889999999999999999999999964

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.80  E-value=6.8e-06  Score=78.47  Aligned_cols=41  Identities=20%  Similarity=0.232  Sum_probs=38.2

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.+++|+.++|+|++|||||||++.|  .++..+..|.|+
T Consensus      1097 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL--~rl~~p~~G~I~ 1137 (1321)
T 4f4c_A         1097 GLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIF 1137 (1321)
T ss_dssp             EEEEEECTTCEEEEECSTTSSTTSHHHHH--TTSSCCSSSEEE
T ss_pred             ceeEEECCCCEEEEECCCCChHHHHHHHH--hcCccCCCCEEE
Confidence            56789999999999999999999999999  899999999885

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.80  E-value=3.4e-06  Score=72.77  Aligned_cols=42  Identities=17%  Similarity=0.142  Sum_probs=31.4

Q ss_pred             CCCc-cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          79 DPSV-LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        79 ~~~~-~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      +.++ .++++.+++|+|+||||||||++.+.-.++.++..|.+
T Consensus        30 ~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i   72 (525)
T 1tf7_A           30 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV   72 (525)
T ss_dssp             HHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEE
T ss_pred             HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4677 89999999999999999999999932134444334443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.77  E-value=1.4e-05  Score=67.13  Aligned_cols=36  Identities=17%  Similarity=0.267  Sum_probs=27.4

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCcc-cccccEEE
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQ  122 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-~e~G~Itq  122 (139)
                      .++.+++++|+||+|||||+++|  .+... ...|.|..
T Consensus       213 ~~G~~~~lvG~sG~GKSTLln~L--~g~~~~~~~G~I~~  249 (358)
T 2rcn_A          213 LTGRISIFAGQSGVGKSSLLNAL--LGLQNEILTNDVSN  249 (358)
T ss_dssp             HTTSEEEEECCTTSSHHHHHHHH--HCCSSCCCCC----
T ss_pred             cCCCEEEEECCCCccHHHHHHHH--hccccccccCCccc
Confidence            46889999999999999999999  55555 66676643

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.74  E-value=1.4e-05  Score=57.73  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=21.2

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+++|+|++|||||||.+.|.+
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999975

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.72  E-value=1.8e-05  Score=57.99  Aligned_cols=28  Identities=21%  Similarity=0.123  Sum_probs=24.2

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +..+++..+.+.||+|+|||||+++|.+
T Consensus        33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           33 FNPEEGKGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4456689999999999999999999953

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.72  E-value=1.2e-05  Score=59.20  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+++++|++|+|||||++.|.+
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc
Confidence            46899999999999999999964

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.72  E-value=1.2e-05  Score=69.24  Aligned_cols=32  Identities=31%  Similarity=0.330  Sum_probs=28.2

Q ss_pred             CCCccccCCCE--EEEEeecCCchhHHHHHHHhc
Q psy4669          79 DPSVLMKRPPV--VTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        79 ~~~~~~~r~pv--v~ImG~~g~GKTTLL~~L~~~  110 (139)
                      +.++.+++|.+  ++|+|+||+|||||+++|.+.
T Consensus        32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            46788999999  999999999999999999764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.70  E-value=9.4e-06  Score=63.58  Aligned_cols=24  Identities=38%  Similarity=0.504  Sum_probs=22.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +++.+++|+|++|||||||++.|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            678899999999999999999996

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.70  E-value=1.2e-05  Score=68.66  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=27.6

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccE
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGI  120 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~I  120 (139)
                      ..++.+++|+||+||||||||++|  .+...+..|.|
T Consensus       164 ~~~ggii~I~GpnGSGKTTlL~al--lg~l~~~~g~I  198 (418)
T 1p9r_A          164 KRPHGIILVTGPTGSGKSTTLYAG--LQELNSSERNI  198 (418)
T ss_dssp             TSSSEEEEEECSTTSCHHHHHHHH--HHHHCCTTSCE
T ss_pred             HhcCCeEEEECCCCCCHHHHHHHH--HhhcCCCCCEE
Confidence            357789999999999999999999  44444455654

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.69  E-value=1.6e-05  Score=61.16  Aligned_cols=29  Identities=31%  Similarity=0.416  Sum_probs=25.5

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ....+++.+++|.|++|||||||++.|.+
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~   42 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEK   42 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHh
Confidence            44567899999999999999999999955

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.69  E-value=1.2e-05  Score=75.52  Aligned_cols=31  Identities=29%  Similarity=0.414  Sum_probs=28.7

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++.+.+|.+++|+|+|||||||||++|.+
T Consensus       453 ~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          453 KTQLRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4688899999999999999999999999974

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.68  E-value=8.7e-06  Score=72.02  Aligned_cols=31  Identities=26%  Similarity=0.527  Sum_probs=21.6

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCccc-ccccEE
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVVKS-EFGGIT  121 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~~~-e~G~It  121 (139)
                      .++|+|++||||||||++|  +|+..+ ..|.|+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I--~Gl~~P~~sG~vt   78 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEAL--SGVALPRGSGIVT   78 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHH--HSCC-------CC
T ss_pred             eEEEECCCCChHHHHHHHH--hCCCCCCCCCeEE
Confidence            3999999999999999999  555544 566654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.68  E-value=2.3e-05  Score=60.75  Aligned_cols=29  Identities=10%  Similarity=0.346  Sum_probs=23.8

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +....++++++|+||+|+|||||++.|.+
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHh
Confidence            34445889999999999999999999975

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.67  E-value=1.5e-05  Score=62.95  Aligned_cols=30  Identities=13%  Similarity=0.163  Sum_probs=26.9

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.++++.+++|+|++|+|||||++.|.+
T Consensus        28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           28 KTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             HHCSBCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred             HhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            456789999999999999999999999944

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.66  E-value=9.8e-06  Score=67.63  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=28.0

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcCCcccc-cccE
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE-FGGI  120 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e-~G~I  120 (139)
                      ++++.+++|+||+|||||||+++|.  +...+. .|.|
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~--~~~~~~~~g~I  168 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMI--DYINQTKSYHI  168 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHH--HHHHHHSCCEE
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHH--hhcCcCCCcEE
Confidence            6788999999999999999999994  444443 4554

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.66  E-value=2.4e-05  Score=56.76  Aligned_cols=25  Identities=16%  Similarity=0.348  Sum_probs=22.4

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+++|+|++|||||||.+.|.+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4578999999999999999999964

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.65  E-value=1.6e-06  Score=68.55  Aligned_cols=27  Identities=22%  Similarity=0.288  Sum_probs=22.6

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+.+ .+++|+|||||||||||++|.+
T Consensus        23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g   49 (227)
T 1qhl_A           23 FDLDE-LVTTLSGGNGAGKSTTMAAFVT   49 (227)
T ss_dssp             ECHHH-HHHHHHSCCSHHHHHHHHHHHH
T ss_pred             EEEcC-cEEEEECCCCCCHHHHHHHHhc
Confidence            44444 7899999999999999999954

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.64  E-value=2.7e-05  Score=57.80  Aligned_cols=27  Identities=15%  Similarity=0.140  Sum_probs=24.7

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++.+++|+|++|+|||||++.|.+
T Consensus        19 gi~~G~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           19 GIPQGFFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             SEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999999999999953

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.64  E-value=1.4e-05  Score=60.08  Aligned_cols=26  Identities=35%  Similarity=0.353  Sum_probs=22.9

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++.+++|+|++|||||||++.|.+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999999954

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.64  E-value=3.7e-05  Score=57.88  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHhcCCccc
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS  115 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~  115 (139)
                      --++++.++.|+|++|+|||||+..|.+....++
T Consensus        19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~   52 (243)
T 1n0w_A           19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPI   52 (243)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred             CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence            3578999999999999999999999966434444

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.63  E-value=6.5e-06  Score=67.78  Aligned_cols=30  Identities=17%  Similarity=0.278  Sum_probs=26.8

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++.+.++ +++|+|+||+||||||++|..
T Consensus        53 ~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~   82 (415)
T 4aby_A           53 QLELELGGG-FCAFTGETGAGKSIIVDALGL   82 (415)
T ss_dssp             EEEEECCSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred             eEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence            467888899 999999999999999999953

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.63  E-value=7e-06  Score=61.89  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=20.1

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|+|++|||||||++.|.+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999943

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.59  E-value=0.00012  Score=54.03  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=21.7

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ...++++|++|+|||||++++.+..
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            4578999999999999999997643

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.58  E-value=1.4e-05  Score=66.69  Aligned_cols=27  Identities=22%  Similarity=0.263  Sum_probs=23.4

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...++.+++|+||+||||||||++|.+
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            456677999999999999999999943

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.58  E-value=3.9e-05  Score=57.32  Aligned_cols=28  Identities=29%  Similarity=0.368  Sum_probs=24.8

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++++.+++|+|++|||||||.+.|.+
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567788999999999999999999965

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.54  E-value=5.6e-05  Score=61.61  Aligned_cols=94  Identities=14%  Similarity=0.157  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeeeCCCCccccCCCCCcccCCCCCCCCccccCCCEEEEE
Q psy4669          14 CDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVINPTNSVADDSNGKDVERRPPADPSVLMKRPPVVTIM   93 (139)
Q Consensus        14 ~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~r~pvv~Im   93 (139)
                      -+...+.++..+..  .+++. .++. +.....+..|+.++............ ........++........+.-.++|+
T Consensus        97 gN~~~n~~~e~~~~--~~~~~-~i~~-~y~s~~A~lYr~kl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~kI~iv  171 (329)
T 3o47_A           97 GNAKFREFLESQED--YDPCW-SLQE-KYNSRAAALFRDKVVALAEGREWSLE-SSPAQNWTPPQPRGLFGKKEMRILMV  171 (329)
T ss_dssp             CHHHHHHHHHTCSS--CCTTC-CHHH-HHHSHHHHHHHHHHHHHHTTCCCCSC-C-----CCCCC------CCSEEEEEE
T ss_pred             CcHHHHHHHHhcCC--CCCCC-Cccc-cccchHHHHHhhhccccccCCccccc-cccccccCCCCcccccccCcceEEEE
Confidence            34555666665422  33444 5664 47777788777654432211111000 00000000111111222344478999


Q ss_pred             eecCCchhHHHHHHHhcCC
Q psy4669          94 GHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        94 G~~g~GKTTLL~~L~~~~v  112 (139)
                      |+.|+|||||++.+.+..+
T Consensus       172 G~~~vGKSsLl~~l~~~~~  190 (329)
T 3o47_A          172 GLDAAGKTTILYKLKLGEI  190 (329)
T ss_dssp             ESTTSSHHHHHHHTCSSCC
T ss_pred             CCCCccHHHHHHHHhCCCC
Confidence            9999999999999965443

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.53  E-value=5.1e-05  Score=56.96  Aligned_cols=23  Identities=39%  Similarity=0.575  Sum_probs=21.1

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+++|+|++||||||+.+.|.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999975

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.50  E-value=6.4e-05  Score=54.17  Aligned_cols=25  Identities=20%  Similarity=0.518  Sum_probs=21.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      +...++++|++|+|||||+++|.+.
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3467999999999999999999653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.49  E-value=3.3e-05  Score=62.25  Aligned_cols=28  Identities=29%  Similarity=0.454  Sum_probs=24.4

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .+.++++|+||+|+|||||+++|.+..+
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~   33 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKI   33 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence            4667999999999999999999987544

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.47  E-value=0.00011  Score=54.09  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ..++++|++|+|||||+++|.+..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            468999999999999999997643

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.46  E-value=5.4e-05  Score=55.28  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=20.4

Q ss_pred             CCEEEEEeecCCchhHHHHHHH
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +.+.+|.||||+||||||++|.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4699999999999999999986

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.46  E-value=5.9e-05  Score=56.57  Aligned_cols=26  Identities=31%  Similarity=0.482  Sum_probs=23.3

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++.+++++|++|+|||||.+.|..
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999999965

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.45  E-value=9.1e-05  Score=56.60  Aligned_cols=47  Identities=15%  Similarity=0.173  Sum_probs=29.7

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCcccccc--cEEEEeeEEEEEe
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG--GITQHIGAFVGFL  131 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G--~Itq~i~ay~V~~  131 (139)
                      .+...++++|++|+|||||+++|.+..+......  ++|.+...+.+..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~   75 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW   75 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe
Confidence            3456789999999999999999977555333222  4555555444443

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.44  E-value=8.3e-05  Score=62.08  Aligned_cols=46  Identities=28%  Similarity=0.345  Sum_probs=30.4

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCc---ccccccEEEEeeEEEEEe
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV---KSEFGGITQHIGAFVGFL  131 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~---~~e~G~Itq~i~ay~V~~  131 (139)
                      ....++++||+|||||||+++|.+....   .....+||+++++....+
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~   55 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEI   55 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccccccc
Confidence            3457899999999999999999643221   122357888877554433

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.42  E-value=7e-05  Score=62.74  Aligned_cols=28  Identities=21%  Similarity=0.393  Sum_probs=24.6

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+..+++++|+||||+||||||++|..
T Consensus        21 ~~~~~~~~~~i~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A           21 VGFGESNFTSIIGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence            4456789999999999999999999964

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.40  E-value=7e-05  Score=59.64  Aligned_cols=28  Identities=25%  Similarity=0.298  Sum_probs=23.8

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++..+++  +.+.||+|+|||||+++|.+
T Consensus        39 ~~l~~~~G--vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           39 LGLVTPAG--VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             TTCCCCSE--EEEESSTTSCHHHHHHHHHH
T ss_pred             cCCCCCCe--EEEECCCCCcHHHHHHHHHH
Confidence            45566666  99999999999999999965

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.40  E-value=6.2e-05  Score=60.89  Aligned_cols=28  Identities=21%  Similarity=0.459  Sum_probs=23.9

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .++.+.++ +++|+|+||+||||||++|.
T Consensus        18 ~~l~~~~g-~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           18 SLIGFSDR-VTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             EEEECCSS-EEEEECCTTTCSTHHHHHHH
T ss_pred             eEEecCCC-cEEEECCCCCcHHHHHHHHH
Confidence            34556555 99999999999999999996

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.40  E-value=0.00012  Score=59.86  Aligned_cols=36  Identities=19%  Similarity=0.440  Sum_probs=29.8

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .-|.++++|++|+|||||+++|.+..+.+...|.+|
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT   68 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT   68 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence            345999999999999999999977667777777665

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.40  E-value=7.6e-05  Score=54.45  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=22.4

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++.+.++|++|+|||||+++|.+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999999954

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.40  E-value=9e-05  Score=55.15  Aligned_cols=24  Identities=25%  Similarity=0.461  Sum_probs=21.2

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      .+++|+|++||||||+.+.|++.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~lg   26 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTDLG   26 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHCC
Confidence            479999999999999999997644

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.38  E-value=7.9e-05  Score=61.61  Aligned_cols=25  Identities=36%  Similarity=0.509  Sum_probs=21.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++-+++|+|++|||||||+++|.+
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3445999999999999999999954

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.38  E-value=0.00012  Score=52.37  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=20.5

Q ss_pred             CEEEEEeecCCchhHHHHHHHhc
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ..++++|++|+|||||++++.+.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999653

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.38  E-value=6.1e-05  Score=63.05  Aligned_cols=30  Identities=27%  Similarity=0.292  Sum_probs=26.0

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++.+.++ +++|+||||+||||||++|..
T Consensus        19 ~~~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           19 PGTLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            456777777 999999999999999999964

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.37  E-value=6.4e-05  Score=62.34  Aligned_cols=28  Identities=14%  Similarity=0.380  Sum_probs=23.6

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .++.++.+ +++|+||||+||||||++|.
T Consensus        17 ~~i~~~~g-~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           17 VDIEFQSG-ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            34566666 88999999999999999986

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.37  E-value=0.00013  Score=57.16  Aligned_cols=26  Identities=27%  Similarity=0.454  Sum_probs=22.1

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ...++++|++|+|||||+++|.+...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCc
Confidence            45789999999999999999976443

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.37  E-value=0.00011  Score=54.37  Aligned_cols=27  Identities=22%  Similarity=0.118  Sum_probs=24.8

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -++++.++.|.|++|+|||||+..|..
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999999954

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.36  E-value=0.00033  Score=49.42  Aligned_cols=27  Identities=22%  Similarity=0.293  Sum_probs=22.0

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      --++++|+.|+|||||++.+.+.....
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~~~~   41 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDSFDN   41 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence            458999999999999999997644433

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.36  E-value=0.00011  Score=54.24  Aligned_cols=31  Identities=19%  Similarity=0.248  Sum_probs=24.9

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      .+...++++++.++|++||||||+.+.|+..
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3456678899999999999999999999653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.36  E-value=0.00017  Score=51.50  Aligned_cols=45  Identities=16%  Similarity=0.209  Sum_probs=29.7

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL  131 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~  131 (139)
                      .--++++|+.|+|||||+++|.+..+.......+...+....+.+
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~   51 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNL   51 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEET
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEe
Confidence            345899999999999999999876544333333333344444444

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.36  E-value=0.0002  Score=50.13  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=21.3

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      -++++|+.|+|||||++.+.+....
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~~~   29 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDKFN   29 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCCCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCC
Confidence            4789999999999999999765443

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.35  E-value=0.0004  Score=49.68  Aligned_cols=30  Identities=17%  Similarity=0.228  Sum_probs=23.9

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCccc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKS  115 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~  115 (139)
                      +..-++++|+.|+|||||++.+.+......
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~   38 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDD   38 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence            345789999999999999999976544433

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.34  E-value=4.4e-05  Score=65.09  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=28.0

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++.++.++.++|+|++|+||||||++|.+
T Consensus       149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg  179 (416)
T 1udx_A          149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTR  179 (416)
T ss_dssp             EEEEEECCSCSEEEECCGGGCHHHHHHHHCS
T ss_pred             eeeeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence            4677889999999999999999999999954

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.34  E-value=0.00011  Score=61.25  Aligned_cols=44  Identities=36%  Similarity=0.385  Sum_probs=30.5

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC--cc-cccccEEEEeeEEEEE
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV--VK-SEFGGITQHIGAFVGF  130 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v--~~-~e~G~Itq~i~ay~V~  130 (139)
                      ...++++||+|||||||+++|.+...  .. ....+||+++++....
T Consensus        10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~   56 (410)
T 1kk1_A           10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAE   56 (410)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeee
Confidence            35689999999999999999964322  11 2235778877754443

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.34  E-value=0.0001  Score=53.75  Aligned_cols=25  Identities=32%  Similarity=0.283  Sum_probs=22.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+++++|++||||||+.+.|.+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999965

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.34  E-value=0.00025  Score=50.15  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=21.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      +..-++++|+.|+|||||+++|.+...
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~~~   34 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADNTF   34 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSCC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345689999999999999999965433

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=97.33  E-value=0.00011  Score=63.27  Aligned_cols=47  Identities=38%  Similarity=0.447  Sum_probs=27.4

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcC-------CcccccccEEEEeeEEEEEee
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTS-------VVKSEFGGITQHIGAFVGFLY  132 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~-------v~~~e~G~Itq~i~ay~V~~~  132 (139)
                      +...++++||+|||||||+++|.+..       .......++|.+++++.+.+.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~   71 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE   71 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC
Confidence            45689999999999999999997644       122334578888887666553

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.32  E-value=0.00013  Score=57.36  Aligned_cols=27  Identities=22%  Similarity=0.132  Sum_probs=24.8

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++.++.|+|++|+|||||+..|.+
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.31  E-value=0.00013  Score=54.03  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             CEEEEEeecCCchhHHHHHHHhc
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      .+++|+|++||||||+.+.|++.
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~~   24 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFREL   24 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHHHC
Confidence            37899999999999999999763

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.31  E-value=5.2e-05  Score=70.64  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=28.8

Q ss_pred             CCCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          77 PADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        77 ~~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+.++.++++++++|+||||+||||||+.+..
T Consensus       663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             cccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence            345677888999999999999999999999853

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.30  E-value=0.00012  Score=56.38  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=22.6

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++..+++  +.+.||+|+|||||+++|.+
T Consensus        45 ~~~~~~g--~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           45 GARIPKG--VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             TCCCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCCe--EEEECCCCCCHHHHHHHHHH
Confidence            4455566  99999999999999999965

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.29  E-value=0.00026  Score=49.24  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=21.1

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      +-++++|+.|+|||||++.+.+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999997654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.28  E-value=8.1e-05  Score=68.24  Aligned_cols=31  Identities=16%  Similarity=0.141  Sum_probs=26.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.++. +++++++|+||||+||||||+.|.+
T Consensus       599 ndisl~-~~g~i~~ItGpNGsGKSTlLr~iag  629 (800)
T 1wb9_A          599 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTAL  629 (800)
T ss_dssp             EEEEEC-SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             eccccc-CCCcEEEEECCCCCChHHHHHHHHH
Confidence            345566 7899999999999999999999965

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.26  E-value=0.00012  Score=65.26  Aligned_cols=28  Identities=32%  Similarity=0.321  Sum_probs=23.9

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +...+++.++|+||+|||||||+++|.+
T Consensus         4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~   31 (665)
T 2dy1_A            4 EGGAMIRTVALVGHAGSGKTTLTEALLY   31 (665)
T ss_dssp             --CCCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCCcEEEEECCCCChHHHHHHHHHH
Confidence            3457889999999999999999999974

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.25  E-value=0.00045  Score=48.15  Aligned_cols=24  Identities=13%  Similarity=0.358  Sum_probs=20.6

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCC
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      -++++|+.|+|||||++.+.+...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~~   28 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSNDF   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999976443

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.25  E-value=0.00034  Score=49.10  Aligned_cols=25  Identities=24%  Similarity=0.226  Sum_probs=21.3

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      --++++|+.|+|||||++.+.+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~~   31 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCENKF   31 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCC
Confidence            4589999999999999999976443

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.25  E-value=0.00018  Score=59.41  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=29.9

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHhcCCccccc
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF  117 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~  117 (139)
                      +..++++.++.|.|++|+|||||+..|.+....++..
T Consensus       125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~  161 (349)
T 1pzn_A          125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE  161 (349)
T ss_dssp             TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGG
T ss_pred             cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhc
Confidence            4678999999999999999999999996543224444

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.25  E-value=0.00046  Score=48.73  Aligned_cols=29  Identities=17%  Similarity=0.214  Sum_probs=23.4

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      +..-++++|+.|+|||||++++.+.....
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~   36 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSYFVS   36 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCcCcc
Confidence            34578999999999999999997654443

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.24  E-value=0.00013  Score=61.49  Aligned_cols=30  Identities=27%  Similarity=0.267  Sum_probs=26.9

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.++++.+++|.||+|+|||||+++|.+
T Consensus       162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             HHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            356789999999999999999999999965

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.24  E-value=0.00037  Score=50.79  Aligned_cols=28  Identities=29%  Similarity=0.383  Sum_probs=22.9

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      ..-++++|+.|+|||||++.+.+..+..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~   35 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKKFSN   35 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence            3468999999999999999997755443

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.23  E-value=0.00016  Score=53.81  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=21.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.+++|+|++|+|||||.+.|.+
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999999964

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.23  E-value=0.00028  Score=59.78  Aligned_cols=30  Identities=17%  Similarity=0.243  Sum_probs=26.4

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .+.++..++|+|++|+|||||+++|.+..+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~   45 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVL   45 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence            567889999999999999999999977443

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.22  E-value=0.00019  Score=54.15  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=21.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++++|+|++|+|||||++.|.+
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHH
Confidence            468999999999999999999864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.21  E-value=0.0005  Score=49.59  Aligned_cols=28  Identities=18%  Similarity=0.262  Sum_probs=22.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      ..-++++|+.|+|||||+++|.+.....
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~   43 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADDTYTE   43 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence            4468999999999999999997644433

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.21  E-value=0.00016  Score=56.63  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=22.5

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.++++  +.|.||+|+|||||+++|.+
T Consensus        69 ~~~~~~g--vll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           69 GARIPKG--VLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             TCCCCCE--EEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCCe--EEEECCCcChHHHHHHHHHH
Confidence            4455555  89999999999999999965

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.21  E-value=0.00019  Score=51.12  Aligned_cols=22  Identities=18%  Similarity=0.158  Sum_probs=19.9

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|+|++|+||||+.+.|..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999964

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.20  E-value=0.00046  Score=54.36  Aligned_cols=39  Identities=18%  Similarity=0.386  Sum_probs=26.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH  123 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~  123 (139)
                      ...|.++|+|+.++|||||+++|.+..+.+...|-.|..
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~   60 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRR   60 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeee
Confidence            345789999999999999999997766655444444433

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.20  E-value=9.6e-05  Score=68.92  Aligned_cols=31  Identities=19%  Similarity=0.120  Sum_probs=27.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .+.++...++++++|+||||+||||||+.+.
T Consensus       653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             EEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred             ccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3566778889999999999999999999983

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.20  E-value=9.5e-05  Score=58.81  Aligned_cols=31  Identities=19%  Similarity=0.240  Sum_probs=27.2

Q ss_pred             CCCccccC---CCEEEEEeecCCchhHHHHHHHh
Q psy4669          79 DPSVLMKR---PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        79 ~~~~~~~r---~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++.+.+   +++++|+|++||||||+.+.|.+
T Consensus        37 ~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           37 KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             HHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred             hhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            35677777   99999999999999999999964

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.20  E-value=0.00017  Score=58.27  Aligned_cols=25  Identities=24%  Similarity=0.235  Sum_probs=22.1

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+++|.|++|||||||.+.|.+
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999854

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.19  E-value=0.00035  Score=48.78  Aligned_cols=25  Identities=12%  Similarity=0.256  Sum_probs=21.1

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      --++++|+.|+|||||++.+.+..+
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~~~   30 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKGIF   30 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcCCC
Confidence            3578999999999999999976443

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.19  E-value=0.00051  Score=48.58  Aligned_cols=25  Identities=20%  Similarity=0.341  Sum_probs=21.4

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .-++++|+.|+|||||++.+.+...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~~~   32 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTNKF   32 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4689999999999999999976443

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.18  E-value=0.00017  Score=54.97  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=20.4

Q ss_pred             CCEEEEEeecCCchhHHHHHHH
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +.+++|.|+||+||||++++|.
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHH
Confidence            4699999999999999999986

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.18  E-value=0.0002  Score=50.40  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=20.6

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      +++++.|++||||||+.+.|...+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L~~~g   25 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLLKERG   25 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHCC
Confidence            689999999999999999994333

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.18  E-value=0.00025  Score=50.78  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      -++++|+.|+|||||++.+.+..+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~~~   27 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKKVR   27 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCcCCc
Confidence            4789999999999999999765443

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.17  E-value=0.00025  Score=60.12  Aligned_cols=37  Identities=22%  Similarity=0.337  Sum_probs=29.2

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG  118 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G  118 (139)
                      --++++.++.|+|++|+|||||+..|.-....+...|
T Consensus       173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G  209 (400)
T 3lda_A          173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG  209 (400)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred             CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence            4589999999999999999999996643455555444

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.17  E-value=0.00017  Score=58.78  Aligned_cols=23  Identities=30%  Similarity=0.564  Sum_probs=20.5

Q ss_pred             CCCEEEEEeecCCchhHHHHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .+.+++|+||||+||||||++|.
T Consensus        22 ~~~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           22 KEGINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHH
Confidence            34699999999999999999984

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.16  E-value=0.00026  Score=50.07  Aligned_cols=26  Identities=31%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ..-++++|+.|+|||||++.+.+...
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~~~   33 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVNDKY   33 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCcC
Confidence            45689999999999999999976443

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.16  E-value=0.00016  Score=63.69  Aligned_cols=27  Identities=26%  Similarity=0.239  Sum_probs=24.3

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++.+++++|+||||||||+++|.+
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~  391 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAA  391 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHH
Confidence            456899999999999999999999954

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.16  E-value=0.00046  Score=49.98  Aligned_cols=25  Identities=32%  Similarity=0.476  Sum_probs=21.3

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ++..++++|++|+|||||+++|.+.
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4557899999999999999999764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.15  E-value=0.0002  Score=59.02  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=22.8

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+++++|+|+.|+|||||+++|.+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHH
Confidence            5589999999999999999999964

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.15  E-value=0.00028  Score=55.56  Aligned_cols=24  Identities=33%  Similarity=0.581  Sum_probs=21.3

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      |.++++|+.|+|||||+++|.+..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Confidence            578999999999999999997654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.15  E-value=0.00049  Score=48.51  Aligned_cols=28  Identities=21%  Similarity=0.304  Sum_probs=23.1

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      +..-++++|+.|+|||||++.+.+....
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~   41 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM   41 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            3456899999999999999999865543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.15  E-value=0.00045  Score=53.24  Aligned_cols=28  Identities=11%  Similarity=0.274  Sum_probs=23.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .+...++|+|+.|+|||||++.|.+...
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~   47 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQA   47 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3456799999999999999999976543

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.15  E-value=0.00025  Score=52.04  Aligned_cols=27  Identities=30%  Similarity=0.382  Sum_probs=23.5

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...++.++.++|++|+||||+.+.|..
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            445788999999999999999999854

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.13  E-value=0.00028  Score=50.91  Aligned_cols=23  Identities=17%  Similarity=0.410  Sum_probs=21.0

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++.++|++|+||||+.+.|..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999975

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.13  E-value=0.00027  Score=53.08  Aligned_cols=26  Identities=19%  Similarity=0.401  Sum_probs=22.4

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++.+++|.|++||||||+.+.|...+
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~lg   28 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFADLG   28 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHcC
Confidence            45689999999999999999997643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.12  E-value=0.00057  Score=49.52  Aligned_cols=29  Identities=24%  Similarity=0.302  Sum_probs=23.5

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      .+..-++++|+.|+|||||++.|.+..+.
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~   51 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFS   51 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            34457899999999999999999775443

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.12  E-value=0.00082  Score=46.54  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=21.0

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      -++++|+.|+|||||++.+.+....
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~~~   29 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGTFI   29 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCc
Confidence            5899999999999999999764433

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.11  E-value=0.00029  Score=52.24  Aligned_cols=46  Identities=30%  Similarity=0.398  Sum_probs=31.1

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcC-C-cccccccEEEEeeEEEEE
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTS-V-VKSEFGGITQHIGAFVGF  130 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~-v-~~~e~G~Itq~i~ay~V~  130 (139)
                      .+.+.++++|+.|+|||||+++|.+.. + .....-+.|+++..+.+.
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~   74 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVG   74 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEES
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEec
Confidence            346789999999999999999996643 2 112222445565555554

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.11  E-value=0.00084  Score=46.88  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=21.3

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      --++++|+.|+|||||++.+.+...
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~   31 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDSF   31 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCC
Confidence            4589999999999999999976543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.10  E-value=0.00055  Score=49.43  Aligned_cols=27  Identities=22%  Similarity=0.496  Sum_probs=22.9

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      .+.+.++++|+.|+|||||++.|.+..
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999999999997643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.10  E-value=0.0008  Score=46.86  Aligned_cols=24  Identities=17%  Similarity=0.278  Sum_probs=20.6

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      --++++|+.|+|||||++.+.+..
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            358899999999999999997643

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.08  E-value=0.00032  Score=51.40  Aligned_cols=26  Identities=35%  Similarity=0.603  Sum_probs=22.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      .++.+++|+|++||||||+.+.|+..
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            45678999999999999999999653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.08  E-value=0.00053  Score=47.34  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=21.6

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      -++++|+.|+|||||++.+.+.....
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~~~~   30 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNHFVD   30 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCcc
Confidence            48899999999999999997654433

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.08  E-value=0.00049  Score=47.74  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=21.8

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      -++++|+.|+|||||++.+.+..+..
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~~~~~   31 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYDEFVE   31 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCccCC
Confidence            57899999999999999998755433

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.07  E-value=0.00058  Score=48.48  Aligned_cols=26  Identities=23%  Similarity=0.445  Sum_probs=21.8

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      --++++|+.|+|||||++.+.+....
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~~~~   38 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKDQFV   38 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCT
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCC
Confidence            46899999999999999999765443

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.07  E-value=0.00019  Score=58.66  Aligned_cols=30  Identities=30%  Similarity=0.332  Sum_probs=25.4

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++...++.+++++|++|+||||++..|++
T Consensus        97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A           97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcccCCCCeEEEEEcCCCChHHHHHHHHHH
Confidence            344567889999999999999999999954

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.06  E-value=0.00033  Score=50.90  Aligned_cols=25  Identities=36%  Similarity=0.644  Sum_probs=22.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++.++.++|++|+||||+.+.|..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999999864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.05  E-value=0.00027  Score=57.06  Aligned_cols=20  Identities=35%  Similarity=0.549  Sum_probs=17.8

Q ss_pred             EEEeecCCchhHHHHHHHhc
Q psy4669          91 TIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        91 ~ImG~~g~GKTTLL~~L~~~  110 (139)
                      +++|++|+|||||+++|.+.
T Consensus        22 ~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           22 MVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEETTSSHHHHHHHHHC-
T ss_pred             EEECCCCCCHHHHHHHHhCC
Confidence            99999999999999998554

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.05  E-value=0.0012  Score=47.18  Aligned_cols=27  Identities=30%  Similarity=0.423  Sum_probs=23.3

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ...+.++++|+.|+|||||++.+.+..
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCc
Confidence            456789999999999999999997644

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.05  E-value=0.00095  Score=47.90  Aligned_cols=28  Identities=21%  Similarity=0.330  Sum_probs=23.0

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      +..-++++|+.|+|||||++.+.+..+.
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~   41 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFD   41 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            3457899999999999999999765433

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.05  E-value=0.00011  Score=68.93  Aligned_cols=30  Identities=27%  Similarity=0.393  Sum_probs=27.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHH
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTL  107 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L  107 (139)
                      .++++.++++.+++|+|+||+|||||++.|
T Consensus       641 k~Vsl~I~~Geiv~I~G~nGSGKSTLl~~l  670 (972)
T 2r6f_A          641 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEV  670 (972)
T ss_dssp             CSEEEEEESSSEEECCBCTTSSHHHHHTTT
T ss_pred             ccceEEEcCCCEEEEEcCCCCCHHHHHHHH
Confidence            456789999999999999999999999985

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.04  E-value=0.00053  Score=51.68  Aligned_cols=29  Identities=14%  Similarity=0.346  Sum_probs=23.9

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      ++.+-++++|+.|+|||||++.+.+..+.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~   55 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVD   55 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence            45678999999999999999999664443

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.04  E-value=0.00018  Score=65.65  Aligned_cols=23  Identities=30%  Similarity=0.288  Sum_probs=21.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++++|+||||+||||||+.|.+
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iag  598 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTAL  598 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHh
Confidence            99999999999999999999964

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.03  E-value=0.00072  Score=49.59  Aligned_cols=27  Identities=19%  Similarity=0.272  Sum_probs=22.4

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      ..-++++|+.|+|||||++.|.+..+.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~   34 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDTYT   34 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            356899999999999999999764443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.03  E-value=0.00029  Score=57.06  Aligned_cols=23  Identities=30%  Similarity=0.315  Sum_probs=20.9

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.+.+.||+|+|||||+++|.+
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            37899999999999999999965

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.02  E-value=0.00039  Score=50.24  Aligned_cols=23  Identities=26%  Similarity=0.221  Sum_probs=20.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+++|.|++|+||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.02  E-value=0.00037  Score=50.70  Aligned_cols=25  Identities=32%  Similarity=0.337  Sum_probs=22.3

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+++++.++|++|+||||+.+.|..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            4678999999999999999999963

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.01  E-value=0.00036  Score=51.90  Aligned_cols=26  Identities=31%  Similarity=0.437  Sum_probs=22.8

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+.++++++|+.|+|||||++.|..
T Consensus        27 ~~~~~~i~i~G~~g~GKTTl~~~l~~   52 (221)
T 2wsm_A           27 ESGTVAVNIMGAIGSGKTLLIERTIE   52 (221)
T ss_dssp             HHTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ccCceEEEEEcCCCCCHHHHHHHHHH
Confidence            34678999999999999999999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.01  E-value=0.00076  Score=49.35  Aligned_cols=28  Identities=18%  Similarity=0.259  Sum_probs=22.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .+..-++++|+.|+|||||++.+.+..+
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~   45 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKF   45 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCC
Confidence            4556799999999999999999976544

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.01  E-value=0.00048  Score=57.36  Aligned_cols=26  Identities=31%  Similarity=0.593  Sum_probs=21.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ..++++|+|++|+|||||+++|.+..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence            45679999999999999999996644

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.99  E-value=0.0011  Score=49.06  Aligned_cols=27  Identities=22%  Similarity=0.233  Sum_probs=22.1

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      +.--++++|+.|+|||||++++.+..+
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~   50 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTDNKF   50 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhcCCC
Confidence            345689999999999999999965443

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.99  E-value=0.00039  Score=52.31  Aligned_cols=28  Identities=25%  Similarity=0.286  Sum_probs=24.5

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...+++.++++.|++|+||||+.+.|.+
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4567789999999999999999999853

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.99  E-value=0.0004  Score=59.24  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=19.2

Q ss_pred             EEEEeecCCchhHHHHHHHhcC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++|+|++|+|||||+++|.+..
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            3999999999999999995543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.98  E-value=0.00076  Score=46.97  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=20.6

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCC
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      -++++|+.|+|||||++++.+...
T Consensus         5 ki~v~G~~~~GKssli~~l~~~~~   28 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQGIF   28 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            478999999999999999976443

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.98  E-value=0.0008  Score=48.68  Aligned_cols=27  Identities=22%  Similarity=0.257  Sum_probs=22.5

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      +..-++++|+.|+|||||++.+.+..+
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~   45 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRF   45 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCC
Confidence            445789999999999999999976443

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.98  E-value=0.0012  Score=47.11  Aligned_cols=27  Identities=19%  Similarity=0.196  Sum_probs=22.1

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      .--++++|+.|+|||||++.+.+....
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~   44 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQKIFV   44 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            345799999999999999999764433

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.97  E-value=0.00079  Score=47.23  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=18.8

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -++++|+.|+|||||++.+.+
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999999954

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=96.97  E-value=0.00024  Score=63.20  Aligned_cols=23  Identities=39%  Similarity=0.588  Sum_probs=20.9

Q ss_pred             CCCEEEEEeecCCchhHHHHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      |.+.++|+||+|||||||.++|.
T Consensus         1 kIRNi~IiaHvD~GKTTL~e~LL   23 (638)
T 3j25_A            1 KIINIGVLAHVDAGKTTLTESLL   23 (638)
T ss_dssp             CCCCCEEECCSTTSSHHHHHHHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHH
Confidence            46789999999999999999986

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.96  E-value=0.0012  Score=48.06  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=21.3

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .-++++|+.|+|||||++.+.+..+
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~~   33 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDSF   33 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4589999999999999999976443

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=96.96  E-value=0.00027  Score=63.38  Aligned_cols=25  Identities=36%  Similarity=0.468  Sum_probs=22.8

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +.+.+.++|+||+|||||||.++|.
T Consensus        10 ~~~IRNi~IiaHvd~GKTTL~d~LL   34 (709)
T 4fn5_A           10 INRYRNIGICAHVDAGKTTTTERVL   34 (709)
T ss_dssp             GGGEEEEEEECCSSSCHHHHHHHHH
T ss_pred             hHHCeEEEEEcCCCCCHHHHHHHHH
Confidence            4678899999999999999999985

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.96  E-value=0.00085  Score=52.31  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=22.3

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ...++++|++|+|||||+++|.+...
T Consensus        36 ~~~I~lvG~~g~GKSSLin~l~~~~~   61 (262)
T 3def_A           36 SMTVLVLGKGGVGKSSTVNSLIGEQV   61 (262)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            45789999999999999999987553

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.96  E-value=0.0013  Score=49.16  Aligned_cols=28  Identities=18%  Similarity=0.245  Sum_probs=22.8

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .+..-++++|+.|+|||||++.+.+..+
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~   51 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLF   51 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCC
Confidence            3445789999999999999999976443

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.96  E-value=0.00039  Score=53.18  Aligned_cols=21  Identities=38%  Similarity=0.495  Sum_probs=18.8

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.|+||||+|||||++.|..
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            377999999999999999974

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.95  E-value=0.0014  Score=46.69  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=21.9

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      +..-++++|+.|+|||||++.+.+..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~   30 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQ   30 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCC
Confidence            34578999999999999999997543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=96.95  E-value=0.00031  Score=58.57  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=29.0

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY  132 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~  132 (139)
                      .++++||+|||||||+++|.        .-++|.+++.+.+...
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~   58 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKE   58 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSS
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecC
Confidence            89999999999999999993        4467777777666543

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.95  E-value=0.00052  Score=54.26  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=21.6

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ...++++|+.|+|||||+++|.+..
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC
Confidence            3578999999999999999997644

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.95  E-value=0.00056  Score=50.54  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=22.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+++|.|+.||||||+.+.|+.
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            4678999999999999999999964

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.95  E-value=0.00052  Score=50.42  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=22.1

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.+++|.|+.||||||+.+.|+.
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999999999975

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.94  E-value=0.00044  Score=53.61  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.4

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++.+++|.|++||||||+++.|..
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            44889999999999999999999964

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.94  E-value=0.00047  Score=50.32  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=19.9

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+++|.|++||||||+.+.|.+
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCccCHHHHHHHHHH
Confidence            3689999999999999999975

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.94  E-value=0.0005  Score=52.64  Aligned_cols=27  Identities=19%  Similarity=0.246  Sum_probs=23.0

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +..++.+++|+|++||||||+.+.|++
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999999999975

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.94  E-value=0.00045  Score=52.29  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=20.7

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+++.|+|++|+|||||+..|..
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999988753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.94  E-value=0.00055  Score=49.46  Aligned_cols=27  Identities=37%  Similarity=0.538  Sum_probs=23.4

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      .+.+.++++|+.|+|||||+++|.+..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999997643

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.94  E-value=0.00059  Score=49.69  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=22.3

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++++|+|+.||||||+.+.|+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999964

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.94  E-value=0.00037  Score=50.63  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=21.3

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.+++++|++||||||+.+.|..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999963

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.94  E-value=0.00035  Score=51.69  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=19.3

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++|.|++|||||||.+.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            789999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.94  E-value=0.00054  Score=59.02  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=25.6

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++++.+++|+|++|+|||||++.+.+
T Consensus       276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g  303 (525)
T 1tf7_A          276 GGFFKDSIILATGATGTGKTLLVSRFVE  303 (525)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            3679999999999999999999999965

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.94  E-value=0.0012  Score=46.87  Aligned_cols=26  Identities=19%  Similarity=0.210  Sum_probs=21.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ..-++++|+.|+|||||++.+.+...
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~~~   36 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDGKF   36 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34689999999999999999976443

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.93  E-value=0.0011  Score=47.84  Aligned_cols=26  Identities=23%  Similarity=0.286  Sum_probs=22.1

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .--++++|+.|+|||||++.+.+...
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~   47 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDSF   47 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCC
Confidence            45689999999999999999976443

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=96.93  E-value=0.0015  Score=55.36  Aligned_cols=24  Identities=38%  Similarity=0.538  Sum_probs=20.9

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .....++++||+|||||||++.|.
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll   38 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIM   38 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHH
Confidence            445688999999999999999994

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=96.93  E-value=0.00028  Score=66.30  Aligned_cols=30  Identities=23%  Similarity=0.220  Sum_probs=25.4

Q ss_pred             CCCccccC-------CCEEEEEeecCCchhHHHHHHHh
Q psy4669          79 DPSVLMKR-------PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        79 ~~~~~~~r-------~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++...+       +.+++|+||||+||||||+.+ +
T Consensus       774 di~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-G  810 (1022)
T 2o8b_B          774 DILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-G  810 (1022)
T ss_dssp             EEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-H
T ss_pred             eeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-H
Confidence            44555655       899999999999999999998 5

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=96.92  E-value=0.00028  Score=61.86  Aligned_cols=26  Identities=38%  Similarity=0.473  Sum_probs=23.7

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ...|.+.++|+||+|||||||.++|.
T Consensus        27 e~~r~RNiaIiaHvdaGKTTLtE~lL   52 (548)
T 3vqt_A           27 EAARRRTFAIISHPDAGKTTLTEKLL   52 (548)
T ss_dssp             HHHTEEEEEEECCTTSSHHHHHHHHH
T ss_pred             cccccceEEEEeCCCCCHHHHHHHHH
Confidence            46788999999999999999999985

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.92  E-value=0.00029  Score=57.80  Aligned_cols=31  Identities=26%  Similarity=0.298  Sum_probs=27.4

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++...++.+++++|++|+||||++..|++
T Consensus        97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A           97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             CCCCCTTSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5667778899999999999999999999954

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.91  E-value=0.0011  Score=47.27  Aligned_cols=27  Identities=22%  Similarity=0.290  Sum_probs=22.2

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCccc
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVVKS  115 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~~~  115 (139)
                      -++++|+.|+|||||++.|.+..+...
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~~~~~   32 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNHFVDE   32 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSSCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCC
Confidence            578999999999999999986554433

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.90  E-value=0.00056  Score=49.71  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=20.9

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++.++|++||||||+-+.|+.
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999999964

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.90  E-value=0.00084  Score=49.48  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=20.9

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      +.--++++|+.|+|||||++.+.+..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~   49 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIENK   49 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC--
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCC
Confidence            34568999999999999999996543

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.90  E-value=0.00066  Score=50.12  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=22.5

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+++|.|+.|+||||+.+.|+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999964

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.88  E-value=0.00054  Score=49.77  Aligned_cols=21  Identities=43%  Similarity=0.629  Sum_probs=19.0

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -++++|++|+|||||++.+.+
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999954

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.87  E-value=0.00092  Score=47.40  Aligned_cols=28  Identities=21%  Similarity=0.209  Sum_probs=22.9

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      ..-++++|+.|+|||||++.+.+..+..
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~~~~~   45 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYDEFVE   45 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCC
Confidence            3568999999999999999998655433

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.87  E-value=0.00056  Score=53.80  Aligned_cols=26  Identities=31%  Similarity=0.409  Sum_probs=21.9

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ...++++|+.|+|||||+++|.+...
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~   30 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQ   30 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCC
Confidence            35689999999999999999976443

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.86  E-value=0.0013  Score=45.92  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.7

Q ss_pred             EEEEEeecCCchhHHHHHHHhc
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      -++++|+.|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999763

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.86  E-value=0.00083  Score=48.79  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=21.7

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .--++++|+.|+|||||++.+.+...
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~~   46 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKRF   46 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence            34688999999999999999976444

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.86  E-value=0.00071  Score=48.74  Aligned_cols=29  Identities=21%  Similarity=0.220  Sum_probs=23.3

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      +.--++++|+.|+|||||++.|.+.....
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~   48 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVD   48 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCcc
Confidence            34578999999999999999998654443

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=96.85  E-value=0.00059  Score=58.26  Aligned_cols=23  Identities=35%  Similarity=0.528  Sum_probs=20.2

Q ss_pred             CCCEEEEEeecCCchhHHHHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +...++++||+|||||||++.|.
T Consensus        42 ~~~~i~iiG~vd~GKSTLi~~Ll   64 (467)
T 1r5b_A           42 EHVNIVFIGHVDAGKSTLGGNIL   64 (467)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHH
T ss_pred             CeeEEEEEECCCCCHHHHHHHHH
Confidence            34579999999999999999985

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.84  E-value=0.00077  Score=55.14  Aligned_cols=26  Identities=42%  Similarity=0.626  Sum_probs=23.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      .+...++++|++|+|||||++.|.+.
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999999653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.83  E-value=0.00065  Score=55.52  Aligned_cols=29  Identities=17%  Similarity=0.229  Sum_probs=25.0

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++...++++++++|++|+|||||++.|.+
T Consensus        50 ~~~~~~~~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           50 MPYCGNTLRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             GGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            34557889999999999999999999953

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.83  E-value=0.00098  Score=48.37  Aligned_cols=29  Identities=21%  Similarity=0.195  Sum_probs=23.5

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      +..-++++|+.|+|||||++.+.+..+..
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~   41 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDEFVE   41 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCT
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence            34568999999999999999998655433

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.83  E-value=0.00061  Score=48.74  Aligned_cols=22  Identities=18%  Similarity=0.311  Sum_probs=20.1

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+.|++|+||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5799999999999999999965

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.83  E-value=0.00072  Score=50.71  Aligned_cols=27  Identities=22%  Similarity=0.214  Sum_probs=23.1

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHH
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTL  107 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L  107 (139)
                      ..-++++.++.|.|++|+|||||+..+
T Consensus        17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~   43 (247)
T 2dr3_A           17 HGGIPERNVVLLSGGPGTGKTIFSQQF   43 (247)
T ss_dssp             TTSEETTCEEEEEECTTSSHHHHHHHH
T ss_pred             CCCCCCCcEEEEECCCCCCHHHHHHHH
Confidence            345789999999999999999996555

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.82  E-value=0.00064  Score=49.86  Aligned_cols=24  Identities=17%  Similarity=0.318  Sum_probs=21.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.+++|.|+.|+||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999999965

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.82  E-value=0.0017  Score=47.61  Aligned_cols=32  Identities=25%  Similarity=0.236  Sum_probs=24.2

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      ...+..-++++|+.|+|||||++++.+..+..
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~   51 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSE   51 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCS
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCC
Confidence            33556679999999999999999998754443

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.82  E-value=0.00073  Score=54.66  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=22.5

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+++++|++|+||||++..|.+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999999953

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.81  E-value=0.0009  Score=48.88  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=19.7

Q ss_pred             CEEEEEeecCCchhHHHHHHHhc
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      .-++++|+.|+|||||++.|.+.
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            45899999999999999999653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.81  E-value=0.001  Score=48.98  Aligned_cols=28  Identities=29%  Similarity=0.323  Sum_probs=21.8

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .+...++++|+.|+|||||++.+.+...
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~   32 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQY   32 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            3456799999999999999999976443

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.81  E-value=0.001  Score=51.70  Aligned_cols=28  Identities=18%  Similarity=0.474  Sum_probs=24.3

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      +.+-++++|..++|||||+++|.+..+.
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~   52 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFL   52 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence            4578999999999999999999876554

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.80  E-value=0.00019  Score=66.35  Aligned_cols=29  Identities=24%  Similarity=0.348  Sum_probs=26.5

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHH-H
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDT-L  107 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~-L  107 (139)
                      +.++.++++.+++|+|+||+|||||++. |
T Consensus       515 ~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L  544 (842)
T 2vf7_A          515 NLDVRFPLGVMTSVTGVSGSGKSTLVSQAL  544 (842)
T ss_dssp             EEEEEEESSSEEEEECCTTSSHHHHCCCCC
T ss_pred             cceEEEcCCCEEEEEcCCCcCHHHHHHHHH
Confidence            4578899999999999999999999996 5

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.80  E-value=0.00042  Score=64.59  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=25.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHH
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLL  104 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL  104 (139)
                      .+.++.++.+.+++|+|+||||||||+
T Consensus       601 k~Vsl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          601 KNIDVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             CSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred             cccceEEcCCcEEEEEccCCCChhhhH
Confidence            457889999999999999999999997

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.79  E-value=0.0007  Score=48.82  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+++|+|++|+||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.79  E-value=0.0012  Score=49.26  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=22.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.+.++++|+.|+|||||++.+..
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~   60 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLID   60 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            3568899999999999999999865

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.79  E-value=0.00047  Score=49.31  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=9.8

Q ss_pred             CEEEEEeecCCchhHHHHHHHhc
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      --++++|+.|+|||||++.+.+.
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEECCCCC------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999653

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.77  E-value=0.0012  Score=54.65  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=19.6

Q ss_pred             EEEEeecCCchhHHHHHHHhcCC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ++|+|++|+|||||+++|.+.+.
T Consensus        40 I~vvG~~g~GKSTLln~L~~~~~   62 (361)
T 2qag_A           40 LMVVGESGLGKSTLINSLFLTDL   62 (361)
T ss_dssp             EEECCCTTSCHHHHHHHHTTCCC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCCC
Confidence            59999999999999999855443

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.77  E-value=0.0006  Score=49.23  Aligned_cols=25  Identities=36%  Similarity=0.500  Sum_probs=17.2

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++.++.++|+.||||||+.+.|..
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999999964

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.76  E-value=0.00071  Score=49.35  Aligned_cols=26  Identities=23%  Similarity=0.413  Sum_probs=22.8

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+++.+++|.|+.||||||+.+.|+.
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999999964

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.75  E-value=0.002  Score=46.84  Aligned_cols=25  Identities=16%  Similarity=0.316  Sum_probs=21.4

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      .--++++|+.|+|||||++.+.+..
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3468999999999999999997644

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.75  E-value=0.00093  Score=49.33  Aligned_cols=27  Identities=22%  Similarity=0.282  Sum_probs=22.9

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...++.+++|+|+.||||||+.+.|..
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            345667999999999999999998863

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.74  E-value=0.00088  Score=49.17  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=20.3

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|.|++||||||+.+.|++
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999975

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.74  E-value=0.0018  Score=45.93  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=21.0

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      --++++|+.|+|||||++.+.+..+
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~~~   30 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTNAF   30 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCC
Confidence            3589999999999999999976443

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.74  E-value=0.002  Score=45.61  Aligned_cols=26  Identities=27%  Similarity=0.383  Sum_probs=22.0

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .--++++|+.|+|||||++.+.+...
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~~~   35 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDGAF   35 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCC
Confidence            34689999999999999999976544

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.72  E-value=0.0016  Score=48.09  Aligned_cols=28  Identities=14%  Similarity=0.272  Sum_probs=23.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .+..-++++|+.|+|||||++.+.+..+
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~   54 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAF   54 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCC
Confidence            4445789999999999999999976443

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.72  E-value=0.00088  Score=47.72  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=21.7

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+..-++++|+.|+|||||++.+.+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4566799999999999999999953

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.71  E-value=0.0012  Score=51.87  Aligned_cols=28  Identities=29%  Similarity=0.477  Sum_probs=21.0

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCcccc
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVVKSE  116 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~~~e  116 (139)
                      -++++|++|+|||||++.|.+.+....+
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~~~~~~   37 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTDLYSPE   37 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSCC----
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCccccC
Confidence            4889999999999999999765555433

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.71  E-value=0.00081  Score=47.32  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             CEEEEEeecCCchhHHHHHHHhc
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      .-++++|+.|+|||||++.+.+.
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            45899999999999999999753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.69  E-value=0.00095  Score=52.78  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=21.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+++|+|++||||||+.+.|..
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999999963

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.69  E-value=0.0011  Score=49.02  Aligned_cols=27  Identities=37%  Similarity=0.538  Sum_probs=23.2

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      .+.+.++++|+.|+|||||+++|.+..
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999997643

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.67  E-value=0.00085  Score=48.66  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=19.6

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|+|++||||||+.+.|+.
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.67  E-value=0.00081  Score=52.30  Aligned_cols=26  Identities=27%  Similarity=0.394  Sum_probs=22.7

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++.++.++|++||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45677999999999999999999964

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.67  E-value=0.0019  Score=46.85  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=23.4

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      +.--++++|+.|+|||||++.+.+..+..
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~   50 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGEIPT   50 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCC
Confidence            34468999999999999999998755433

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.66  E-value=0.00099  Score=46.69  Aligned_cols=26  Identities=35%  Similarity=0.392  Sum_probs=22.1

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      +..-++++|+.|+|||||++.+.+..
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC
Confidence            44678999999999999999997643

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.66  E-value=0.00097  Score=48.13  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.5

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.++++.|+.||||||+.+.|..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998854

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.66  E-value=0.0021  Score=46.99  Aligned_cols=29  Identities=17%  Similarity=0.290  Sum_probs=22.1

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ...+..-++++|+.|+|||||++.+.+..
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            34556789999999999999999997644

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.65  E-value=0.001  Score=50.09  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=21.8

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+++|+|+.||||||+.+.|+.
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.64  E-value=0.00049  Score=48.73  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=20.6

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      --++++|+.|+|||||++.+.+..
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhCc
Confidence            458999999999999999997543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.63  E-value=0.0017  Score=51.67  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=22.5

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+++.+++|+|++||||||+.+.|+.
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999964

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.62  E-value=0.00092  Score=52.34  Aligned_cols=22  Identities=23%  Similarity=0.231  Sum_probs=19.7

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|+|++|+|||||-+.|.+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999999864

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.62  E-value=0.00058  Score=54.42  Aligned_cols=24  Identities=25%  Similarity=0.254  Sum_probs=20.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.|.+.+.||+|+|||||+++|.+
T Consensus        35 ~~~~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           35 DLPHLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            344499999999999999999955

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.61  E-value=0.00055  Score=59.56  Aligned_cols=24  Identities=25%  Similarity=0.537  Sum_probs=22.4

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++++++||+|+|||||+++|.+
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999999964

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.60  E-value=0.00073  Score=54.47  Aligned_cols=29  Identities=24%  Similarity=0.200  Sum_probs=24.6

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++.  ++.+++++|++|+||||++..|.+
T Consensus        92 ~i~~~--~~~~i~i~g~~G~GKTT~~~~la~  120 (295)
T 1ls1_A           92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLAL  120 (295)
T ss_dssp             CCCCC--SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             eeecC--CCeEEEEECCCCCCHHHHHHHHHH
Confidence            34554  888999999999999999999954

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.60  E-value=0.001  Score=54.77  Aligned_cols=22  Identities=23%  Similarity=0.540  Sum_probs=20.4

Q ss_pred             CCEEEEEeecCCchhHHHHHHH
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +.+++|.|++|+||||+|++|.
T Consensus        25 ~gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           25 KGIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3799999999999999999986

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.60  E-value=0.0014  Score=49.70  Aligned_cols=25  Identities=28%  Similarity=0.325  Sum_probs=21.1

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+++|.|+.||||||+.+.|..
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999999963

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.60  E-value=0.0011  Score=46.37  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=18.9

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -++++|+.|+|||||++.+.+
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999999954

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.60  E-value=0.0017  Score=46.02  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=21.8

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      +.--++++|+.|+|||||++++.+..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence            34568999999999999999997644

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.58  E-value=0.0032  Score=45.61  Aligned_cols=29  Identities=24%  Similarity=0.330  Sum_probs=23.5

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      ++.--++++|+.|+|||||++.+.+..+.
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~   48 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFN   48 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            44556899999999999999999764443

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.57  E-value=0.002  Score=48.16  Aligned_cols=26  Identities=19%  Similarity=0.363  Sum_probs=21.9

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ..-++++|+.|+|||||++.+.+..+
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~~   38 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNEF   38 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCCC
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCC
Confidence            34689999999999999999976443

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.57  E-value=0.0025  Score=45.90  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=21.2

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      --++++|+.|+|||||++.+.+...
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~~~   32 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKDCF   32 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3578999999999999999976443

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.56  E-value=0.0015  Score=47.08  Aligned_cols=29  Identities=28%  Similarity=0.269  Sum_probs=21.7

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ...+..-++++|+.|+|||||++.+.+..
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~   45 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNE   45 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCC
Confidence            33455678999999999999999997543

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.56  E-value=0.00082  Score=54.07  Aligned_cols=24  Identities=21%  Similarity=0.553  Sum_probs=18.7

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.+++|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            567999999999999999999864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.55  E-value=0.003  Score=45.45  Aligned_cols=25  Identities=20%  Similarity=0.248  Sum_probs=21.4

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ..-++++|+.|+|||||++++.+..
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~~   32 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKGT   32 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcCC
Confidence            3468999999999999999997643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.55  E-value=0.0015  Score=52.10  Aligned_cols=25  Identities=20%  Similarity=0.495  Sum_probs=21.5

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ...++++|++|+|||||+++|.+..
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC
Confidence            3568999999999999999997643

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.55  E-value=0.0021  Score=46.26  Aligned_cols=30  Identities=23%  Similarity=0.314  Sum_probs=22.7

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ......+-++++|+.|+|||||++.+.+..
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            344566789999999999999999996543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.54  E-value=0.0012  Score=45.98  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             EEEEeecCCchhHHHHHHHhcC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++++|+.|+|||||++.+.+..
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999997533

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.54  E-value=0.0012  Score=52.77  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=21.8

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.++.+.|++|+|||||.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999954

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.53  E-value=0.0015  Score=48.24  Aligned_cols=22  Identities=36%  Similarity=0.561  Sum_probs=19.5

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .-++++|++|+|||||++.+.+
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3578999999999999999954

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=96.52  E-value=0.0008  Score=59.41  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=19.5

Q ss_pred             CCEEEEEeecCCchhHHHHHHH
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ...++|+||+|||||||+++|.
T Consensus       177 ~~~I~iiG~~d~GKSTLi~~Ll  198 (592)
T 3mca_A          177 VVHLVVTGHVDSGKSTMLGRIM  198 (592)
T ss_dssp             EEEEEEECCSSSTHHHHHHHHH
T ss_pred             ccEEEEEcCCCCCHHHHHHHHH
Confidence            3469999999999999999994

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.52  E-value=0.0016  Score=46.90  Aligned_cols=24  Identities=29%  Similarity=0.454  Sum_probs=21.0

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.++++.|+.||||||+.+.|..
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.51  E-value=0.0023  Score=53.73  Aligned_cols=25  Identities=32%  Similarity=0.507  Sum_probs=22.0

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ...-++|+|++|+|||||+++|.+.
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.51  E-value=0.0023  Score=46.54  Aligned_cols=28  Identities=18%  Similarity=0.320  Sum_probs=22.9

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      +.--++++|+.|+|||||++.+.+..+.
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~   54 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFI   54 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence            3456899999999999999999765443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.50  E-value=0.0015  Score=48.22  Aligned_cols=32  Identities=19%  Similarity=0.166  Sum_probs=25.0

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .+...+..-++++|+.|+|||||++.+.+...
T Consensus        19 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~   50 (207)
T 2fv8_A           19 YFQSMIRKKLVVVGDGACGKTCLLIVFSKDEF   50 (207)
T ss_dssp             CGGGSEEEEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred             ccccccCcEEEEECcCCCCHHHHHHHHhcCCC
Confidence            33444556799999999999999999976443

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.50  E-value=0.0013  Score=47.85  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++++|+|++||||||+-+.|+.
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.49  E-value=0.0017  Score=48.81  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=21.5

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+++++|+.||||||+-+.|+.
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.49  E-value=0.0016  Score=47.23  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=21.0

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +..-++++|+.|+|||||++.+.+
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999999954

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.49  E-value=0.00055  Score=58.83  Aligned_cols=29  Identities=17%  Similarity=0.277  Sum_probs=24.3

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+..+ +++|+|+||+||||||++|..
T Consensus        54 ~~l~f~~g-~n~i~G~NGaGKS~lleAl~~   82 (517)
T 4ad8_A           54 LELELGGG-FCAFTGETGAGKSIIVDALGL   82 (517)
T ss_dssp             EEEECCCS-EEEEEESHHHHHHHHTHHHHH
T ss_pred             EEEecCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence            45566655 999999999999999999953

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.47  E-value=0.0017  Score=47.16  Aligned_cols=27  Identities=22%  Similarity=0.264  Sum_probs=22.4

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ...--++++|+.|+|||||++.+.+..
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            344568999999999999999997643

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.46  E-value=0.0012  Score=53.21  Aligned_cols=28  Identities=36%  Similarity=0.508  Sum_probs=23.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      +...++|+|++|+|||||+++|.+..+.
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~   33 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA   33 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCcee
Confidence            4457999999999999999999875543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.46  E-value=0.0018  Score=47.37  Aligned_cols=25  Identities=36%  Similarity=0.481  Sum_probs=20.9

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ...++++|+.|+|||||++.+.+..
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~~   47 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKNDR   47 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478999999999999999997633

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.45  E-value=0.0014  Score=47.42  Aligned_cols=27  Identities=26%  Similarity=0.404  Sum_probs=21.2

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ..+..-++++|+.|+|||||++.+.+.
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            345667999999999999999999543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=96.45  E-value=0.0013  Score=54.78  Aligned_cols=21  Identities=52%  Similarity=0.792  Sum_probs=19.4

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++||+|||||||+++|.+
T Consensus         5 ~I~iiG~~~~GKSTLi~~L~~   25 (397)
T 1d2e_A            5 NVGTIGHVDHGKTTLTAAITK   25 (397)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHhC
Confidence            589999999999999999975

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.45  E-value=0.0015  Score=46.69  Aligned_cols=22  Identities=27%  Similarity=0.145  Sum_probs=19.6

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      --++++|+.|+|||||++.+.+
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~   36 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYS   36 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999999965

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.43  E-value=0.00088  Score=48.56  Aligned_cols=26  Identities=19%  Similarity=0.353  Sum_probs=6.3

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      .+.--++++|+.|+|||||++.+.+.
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEEEC-----------------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhC
Confidence            34457899999999999999999654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=96.43  E-value=0.0034  Score=56.50  Aligned_cols=26  Identities=31%  Similarity=0.397  Sum_probs=22.7

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+.+.++|+||+|||||||++.|..
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~   32 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILF   32 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHH
Confidence            35678899999999999999999954

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.42  E-value=0.0015  Score=52.45  Aligned_cols=29  Identities=38%  Similarity=0.503  Sum_probs=24.7

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      +....|+|+|+.|+|||||+++|.+..+.
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~   36 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVS   36 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence            55678999999999999999999875543

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.41  E-value=0.0022  Score=54.59  Aligned_cols=29  Identities=24%  Similarity=0.398  Sum_probs=23.8

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      .+..+..++|+|++|+|||||+++|.+..
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~   46 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQ   46 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC--
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            45667789999999999999999997654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.40  E-value=0.0041  Score=44.50  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=22.1

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++..-++++|+.|+|||||++.+.+..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            455678999999999999999996533

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.40  E-value=0.0022  Score=47.43  Aligned_cols=26  Identities=23%  Similarity=0.157  Sum_probs=22.3

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++.+++++|+.|+||||+.+.|..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45556999999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.39  E-value=0.0054  Score=44.55  Aligned_cols=26  Identities=19%  Similarity=0.275  Sum_probs=21.7

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .--++++|+.|+|||||++.+.+..+
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~~~   46 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTKRF   46 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhCCC
Confidence            34689999999999999999976443

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.39  E-value=0.0018  Score=50.14  Aligned_cols=25  Identities=16%  Similarity=0.371  Sum_probs=21.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+++|.|++||||||+-+.|+.
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4556899999999999999999965

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.38  E-value=0.0017  Score=46.42  Aligned_cols=22  Identities=23%  Similarity=0.247  Sum_probs=19.9

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|+|+.||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=96.37  E-value=0.0014  Score=54.42  Aligned_cols=23  Identities=52%  Similarity=0.667  Sum_probs=20.6

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...++++||+|||||||+++|.+
T Consensus        11 ~~~I~iiG~~~~GKSTLi~~L~~   33 (405)
T 2c78_A           11 HVNVGTIGHVDHGKTTLTAALTY   33 (405)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHh
Confidence            35789999999999999999965

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.37  E-value=0.0043  Score=45.84  Aligned_cols=30  Identities=20%  Similarity=0.214  Sum_probs=22.9

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      .+.--++++|+.|+|||||++.+.+..+..
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~   57 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPG   57 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCC
Confidence            445578999999999999999997644443

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.36  E-value=0.0021  Score=46.46  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=19.2

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++.|+.||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.33  E-value=0.0037  Score=45.44  Aligned_cols=28  Identities=21%  Similarity=0.260  Sum_probs=20.7

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ..+..-++++|+.|+|||||++.+.+..
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~   44 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG   44 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3455678999999999999999997543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.33  E-value=0.0064  Score=45.31  Aligned_cols=28  Identities=21%  Similarity=0.334  Sum_probs=22.9

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      +.--++++|+.|+|||||++.+.+....
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~   54 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDCFP   54 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            3456899999999999999999875443

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=96.32  E-value=0.0019  Score=57.44  Aligned_cols=24  Identities=38%  Similarity=0.616  Sum_probs=17.4

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+.++|+||+|||||||+++|..
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~   26 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQ   26 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999965

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.32  E-value=0.0026  Score=46.98  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=21.8

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++.+.|.|+.|+|||||++.+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999999854

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=96.32  E-value=0.0022  Score=53.35  Aligned_cols=24  Identities=42%  Similarity=0.738  Sum_probs=21.1

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +...++++||+|||||||+++|.+
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~   30 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITG   30 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            446789999999999999999954

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.32  E-value=0.003  Score=45.66  Aligned_cols=27  Identities=26%  Similarity=0.251  Sum_probs=22.3

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      +.--++++|+.|+|||||++.+.+..+
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~   43 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAF   43 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345789999999999999999976443

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=96.28  E-value=0.0026  Score=57.00  Aligned_cols=25  Identities=36%  Similarity=0.526  Sum_probs=22.4

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ..+.+.++|+||.|||||||++.|.
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll   33 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERIL   33 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHH
Confidence            3567889999999999999999996

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.28  E-value=0.0023  Score=46.99  Aligned_cols=26  Identities=27%  Similarity=0.325  Sum_probs=21.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ..-++++|+.|+|||||++.+.+...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~   50 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKDQF   50 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcC
Confidence            34689999999999999999976443

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.27  E-value=0.003  Score=44.48  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=20.7

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+.|.|+.|+|||||++.+..
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.27  E-value=0.0025  Score=45.94  Aligned_cols=25  Identities=32%  Similarity=0.385  Sum_probs=21.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+..-++++|+.|+|||||++.+.+
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3456789999999999999999964

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.27  E-value=0.0027  Score=48.37  Aligned_cols=29  Identities=17%  Similarity=0.122  Sum_probs=22.3

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .....++..++++|+.|+||||+.+.|..
T Consensus        10 ~~~~~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           10 VPESPKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             ----CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            33455678999999999999999999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.27  E-value=0.0015  Score=48.21  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHH
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ..-++++|..|+|||||++.+.
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999999994

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.27  E-value=0.0024  Score=50.41  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=22.1

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+++.+.|.|+.|+|||||++.+.+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHH
Confidence            4577999999999999999999954

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.27  E-value=0.0023  Score=50.01  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++++.+.|+.|+||||+.+.|..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            467999999999999999999864

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.26  E-value=0.0025  Score=45.93  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=21.0

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +..-++++|+.|+|||||++.+.+
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            456799999999999999999954

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.25  E-value=0.0028  Score=48.58  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=19.5

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +-+.+.||+|+|||||.++|.+
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            3488999999999999999965

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.23  E-value=0.0031  Score=46.94  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=20.3

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      .--++++|+.|+|||||++.+.+..
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~~   58 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADGA   58 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC--
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCC
Confidence            3468999999999999999997533

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.19  E-value=0.0029  Score=45.01  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=19.3

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++|+|+.||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999875

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.18  E-value=0.0035  Score=52.64  Aligned_cols=29  Identities=31%  Similarity=0.439  Sum_probs=24.5

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.-+++.++.++|++||||||+.+.|..
T Consensus       252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CSCCSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34456788999999999999999999853

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.17  E-value=0.0091  Score=44.57  Aligned_cols=29  Identities=24%  Similarity=0.382  Sum_probs=22.8

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      +.--++++|+.|+|||||++.+.+..+..
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~   54 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPE   54 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCCS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCC
Confidence            34568999999999999999997654433

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.16  E-value=0.0028  Score=47.14  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=18.6

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++|+|++|+||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999853

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.15  E-value=0.0027  Score=46.29  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      --++++|+.|+|||||++.+.+..
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            468899999999999999886533

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=96.15  E-value=0.0022  Score=53.84  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++++||+|||||||+++|.+
T Consensus        25 ~~i~iiG~~~~GKSTLi~~Ll~   46 (434)
T 1zun_B           25 LRFLTCGNVDDGKSTLIGRLLH   46 (434)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCHHHHHHHHHh
Confidence            4689999999999999999964

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.14  E-value=0.0041  Score=45.67  Aligned_cols=25  Identities=20%  Similarity=0.186  Sum_probs=21.2

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      --++++|+.|+|||||++.+.+..+
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~~~   34 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSNKF   34 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4589999999999999999976443

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.14  E-value=0.0026  Score=53.20  Aligned_cols=27  Identities=33%  Similarity=0.305  Sum_probs=24.4

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -++++.++.|.|++|+|||||+..+..
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~   83 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIA   83 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999998853

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.14  E-value=0.0018  Score=56.71  Aligned_cols=36  Identities=17%  Similarity=0.257  Sum_probs=28.5

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHhcCCccccc
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEF  117 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~  117 (139)
                      .+..+..+..+.++||+|+|||||+++|.+  ......
T Consensus        53 l~~~i~~g~~vll~Gp~GtGKTtlar~ia~--~l~~~~   88 (604)
T 3k1j_A           53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAE--LLPTET   88 (604)
T ss_dssp             HHHHHHTTCCEEEECCTTSSHHHHHHHHHH--TSCCSS
T ss_pred             ccccccCCCEEEEEeCCCCCHHHHHHHHhc--cCCccc
Confidence            345678889999999999999999999954  444443

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.13  E-value=0.005  Score=47.99  Aligned_cols=26  Identities=19%  Similarity=0.388  Sum_probs=22.2

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ...++++|++|+|||||++.|.+..+
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~~~   64 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGERV   64 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCc
Confidence            35789999999999999999977554

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=96.13  E-value=0.00049  Score=50.49  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=21.2

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.--++++|+.|+|||||+++|.+
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~   55 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFAD   55 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            3445789999999999999999954

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.13  E-value=0.0031  Score=48.86  Aligned_cols=24  Identities=21%  Similarity=0.173  Sum_probs=21.2

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.+++|+|++|+||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            566899999999999999999853

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=96.11  E-value=0.0019  Score=57.50  Aligned_cols=25  Identities=48%  Similarity=0.655  Sum_probs=20.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.+.++|+||+|||||||+++|..
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~   28 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLE   28 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHh
Confidence            4567899999999999999999964

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.11  E-value=0.0031  Score=51.44  Aligned_cols=31  Identities=16%  Similarity=0.411  Sum_probs=25.1

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCcccc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSE  116 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e  116 (139)
                      +.|.++++|..++|||||+++|.+..+.+..
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~   60 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRG   60 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCC
Confidence            3478999999999999999999765554433

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.10  E-value=0.003  Score=54.95  Aligned_cols=28  Identities=21%  Similarity=0.286  Sum_probs=23.3

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++..+++  +.+.||+|+|||||+++|.+
T Consensus        59 lg~~ip~G--vLL~GppGtGKTtLaraIa~   86 (499)
T 2dhr_A           59 MGARIPKG--VLLVGPPGVGKTHLARAVAG   86 (499)
T ss_dssp             TSCCCCSE--EEEECSSSSSHHHHHHHHHH
T ss_pred             ccCCCCce--EEEECCCCCCHHHHHHHHHH
Confidence            44555666  99999999999999999965

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.10  E-value=0.0036  Score=45.36  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.9

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+.|.|+.|+|||||++.+..
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999864

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=96.10  E-value=0.0024  Score=53.75  Aligned_cols=23  Identities=43%  Similarity=0.681  Sum_probs=20.3

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...++++||+|||||||+++|..
T Consensus         6 ~~~I~iiG~~~~GKSTLi~~Ll~   28 (435)
T 1jny_A            6 HLNLIVIGHVDHGKSTLVGRLLM   28 (435)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHH
Confidence            35689999999999999999964

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.09  E-value=0.0035  Score=44.33  Aligned_cols=25  Identities=20%  Similarity=0.335  Sum_probs=21.1

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.+.+.|.|+.|+|||||++.+..
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            3456779999999999999999864

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.09  E-value=0.0035  Score=47.89  Aligned_cols=24  Identities=29%  Similarity=0.542  Sum_probs=21.7

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.+++|.|..|+||||+.+.|..
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999999975

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.08  E-value=0.0028  Score=45.00  Aligned_cols=24  Identities=21%  Similarity=0.436  Sum_probs=20.8

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCC
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      -++++|+.|+|||||++.+.+..+
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~~~   32 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTGSY   32 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCC
Confidence            588999999999999999976443

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.06  E-value=0.0036  Score=49.85  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=20.4

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .|.+.|.|+.|+|||||++.+.+
T Consensus        44 ~~~~li~G~~G~GKTtl~~~l~~   66 (389)
T 1fnn_A           44 YPRATLLGRPGTGKTVTLRKLWE   66 (389)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999954

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.05  E-value=0.004  Score=49.50  Aligned_cols=26  Identities=31%  Similarity=0.339  Sum_probs=22.8

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...+..+.+.||+|+|||||.++|.+
T Consensus        46 ~~~~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           46 MTPSKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCcCHHHHHHHHHH
Confidence            45677899999999999999999965

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=96.05  E-value=0.0029  Score=55.15  Aligned_cols=26  Identities=27%  Similarity=0.431  Sum_probs=22.9

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+...++|+||+|||||||++.|..
T Consensus        10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~   35 (529)
T 2h5e_A           10 VAKRRTFAIISHPDAGKTTITEKVLL   35 (529)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCChHHHHHHHHHh
Confidence            35668899999999999999999965

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.04  E-value=0.0039  Score=45.62  Aligned_cols=25  Identities=32%  Similarity=0.408  Sum_probs=21.4

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.--++++|+.|+|||||++.+.+
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            4456799999999999999999954

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.03  E-value=0.0056  Score=50.01  Aligned_cols=36  Identities=25%  Similarity=0.271  Sum_probs=28.4

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG  118 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G  118 (139)
                      -++++.++.|.|++|+|||||+..+......+.+.|
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g  153 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG  153 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence            578999999999999999999998865433443333

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.03  E-value=0.0035  Score=47.61  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=21.3

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...+++|+|.+||||||+-+.|+.
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999965

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.02  E-value=0.0045  Score=46.66  Aligned_cols=24  Identities=17%  Similarity=0.336  Sum_probs=21.2

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++..++++|+.||||||+.+.|+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999864

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=96.02  E-value=0.0033  Score=53.50  Aligned_cols=22  Identities=41%  Similarity=0.545  Sum_probs=19.8

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++++||+|||||||+++|.+
T Consensus         8 ~~i~iiG~~~~GKSTLi~~Ll~   29 (458)
T 1f60_A            8 INVVVIGHVDSGKSTTTGHLIY   29 (458)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999964

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.01  E-value=0.0037  Score=46.59  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.6

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++|+|++|+||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999853

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.00  E-value=0.0036  Score=46.66  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+++|+|+.||||||+.+.|+.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999875

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.00  E-value=0.0067  Score=44.69  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.5

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      --++++|+.|+|||||+++|.+
T Consensus        12 ~ki~vvG~~~~GKSsli~~l~~   33 (218)
T 4djt_A           12 YKICLIGDGGVGKTTYINRVLD   33 (218)
T ss_dssp             EEEEEECCTTSSHHHHHCBCTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3588999999999999999964

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=95.99  E-value=0.0025  Score=55.60  Aligned_cols=25  Identities=36%  Similarity=0.445  Sum_probs=22.5

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ..+.+.++|+||+|+|||||+++|.
T Consensus        10 ~~~~r~IaIiG~~~aGKTTL~~~Ll   34 (528)
T 3tr5_A           10 TAMRRTFAIISHPDAGKTTLTEKLL   34 (528)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHH
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHH
Confidence            4567899999999999999999994

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=95.98  E-value=0.0027  Score=54.15  Aligned_cols=22  Identities=41%  Similarity=0.659  Sum_probs=19.3

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      --++++||+|+|||||+++|..
T Consensus        34 ~ki~iiG~~~~GKSTLi~~Ll~   55 (483)
T 3p26_A           34 LSFVVLGHVDAGKSTLMGRLLY   55 (483)
T ss_dssp             EEEEEESCGGGTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999854

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.96  E-value=0.0045  Score=45.54  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=20.3

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.+.|.|++|+|||||+++|..
T Consensus        54 ~~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           54 MKGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            36889999999999999999854

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=95.94  E-value=0.0061  Score=53.32  Aligned_cols=29  Identities=28%  Similarity=0.518  Sum_probs=25.4

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ....+.++|+|+.|+|||||+++|.+..+
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~   90 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEV   90 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCcc
Confidence            45689999999999999999999987554

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.92  E-value=0.0064  Score=51.00  Aligned_cols=26  Identities=15%  Similarity=0.354  Sum_probs=22.3

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ...-++++|++|+|||||+++|.+..
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~  199 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEE  199 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence            44679999999999999999997644

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.92  E-value=0.004  Score=48.72  Aligned_cols=22  Identities=18%  Similarity=0.311  Sum_probs=20.1

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.++|++|+||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999965

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.89  E-value=0.005  Score=47.93  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=21.9

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+..+.+.||+|+|||||.+++.+
T Consensus        52 ~~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           52 APAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHH
Confidence            3467899999999999999999965

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.89  E-value=0.0039  Score=51.00  Aligned_cols=25  Identities=28%  Similarity=0.302  Sum_probs=22.1

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.++++|+|+.|+|||||++.|..
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999853

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.86  E-value=0.0038  Score=50.07  Aligned_cols=20  Identities=25%  Similarity=0.360  Sum_probs=18.8

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+.||+|+||||+++++.+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999965

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.85  E-value=0.0052  Score=44.03  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.2

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -.+++|+|..||||||+-+.|+.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999865

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.83  E-value=0.0045  Score=52.21  Aligned_cols=26  Identities=31%  Similarity=0.594  Sum_probs=22.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      .+.|.++|+|++|+|||||+++|.+.
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            45789999999999999999999653

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.0042  Score=55.07  Aligned_cols=25  Identities=36%  Similarity=0.526  Sum_probs=21.1

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.-.++++||+|+|||||+++|.+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~  189 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLY  189 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHH
Confidence            3345789999999999999999964

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.80  E-value=0.0055  Score=47.73  Aligned_cols=29  Identities=21%  Similarity=0.332  Sum_probs=24.4

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +....+++|+.|+||.||||+|.-+.|..
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            44567889999999999999999888854

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.79  E-value=0.0085  Score=48.32  Aligned_cols=36  Identities=22%  Similarity=0.304  Sum_probs=27.9

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHhcCCcccccc
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFG  118 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G  118 (139)
                      -++++.++.|.|++|+|||||...+......+.+.|
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g  138 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG  138 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC
Confidence            578999999999999999999988865333333333

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=95.76  E-value=0.0043  Score=57.86  Aligned_cols=26  Identities=27%  Similarity=0.432  Sum_probs=24.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHH
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTL  103 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTL  103 (139)
                      ++++..+||+.+|+|.|.||||||||
T Consensus        15 kni~~~ip~~~l~v~tG~SGSGKSsL   40 (916)
T 3pih_A           15 KNITVRIPKNRLVVITGVSGSGKSSL   40 (916)
T ss_dssp             CSBCCEEETTSEEEEEESTTSSSHHH
T ss_pred             CcceeccCCCcEEEEECCCCCcHHHH
Confidence            46789999999999999999999999

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.76  E-value=0.0066  Score=44.30  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+..-++++|..|+|||||++.+.+
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHh
Confidence            34556799999999999999998865

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.76  E-value=0.0032  Score=52.85  Aligned_cols=25  Identities=32%  Similarity=0.696  Sum_probs=21.9

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      +.++|+|+.++|||||++.|.+...
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~   28 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERI   28 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc
Confidence            7899999999999999999976443

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.75  E-value=0.0061  Score=49.30  Aligned_cols=29  Identities=28%  Similarity=0.224  Sum_probs=24.2

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++..+ +.+++++|++|+||||++..|+.
T Consensus        92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~  120 (297)
T 1j8m_F           92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAY  120 (297)
T ss_dssp             CSCSSS-SEEEEEECSSCSSTTHHHHHHHH
T ss_pred             cccCCC-CeEEEEECCCCCCHHHHHHHHHH
Confidence            445544 88999999999999999999963

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.73  E-value=0.0052  Score=48.76  Aligned_cols=24  Identities=38%  Similarity=0.409  Sum_probs=20.9

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+.|.|++|+|||||+++|.+
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            456789999999999999999954

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.73  E-value=0.0032  Score=48.83  Aligned_cols=27  Identities=26%  Similarity=0.453  Sum_probs=22.1

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...++.+++|.|..|+||||+.+.|..
T Consensus        20 ~~~~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           20 EGTRIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHH
Confidence            346788999999999999999999854

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.73  E-value=0.0067  Score=46.85  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.8

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+.-+.+.||.|+|||||.+++.+
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            4566799999999999999999964

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.70  E-value=0.0044  Score=52.99  Aligned_cols=29  Identities=24%  Similarity=0.200  Sum_probs=24.2

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++.  ++.+++++|++|+||||++..|+.
T Consensus        92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~  120 (425)
T 2ffh_A           92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLAL  120 (425)
T ss_dssp             CCCCC--SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cccCC--CCeEEEEECCCCCCHHHHHHHHHH
Confidence            34444  788999999999999999999954

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.69  E-value=0.0086  Score=50.26  Aligned_cols=24  Identities=33%  Similarity=0.538  Sum_probs=20.6

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      |.++|+|..+.|||||++.|.+..
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~   25 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKK   25 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            689999999999999999997644

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.69  E-value=0.0056  Score=51.03  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++++|+||+|+|||||...|+.
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHH
Confidence            467899999999999999999964

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.68  E-value=0.0038  Score=57.70  Aligned_cols=27  Identities=33%  Similarity=0.436  Sum_probs=24.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHH
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLL  104 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL  104 (139)
                      ++++..+|++.+|+|.|.||||||||.
T Consensus        27 kni~v~iP~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           27 KDISVKVPRDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             CSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred             CCeeEEecCCCEEEEECCCCCCHHHHH
Confidence            467889999999999999999999994

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.67  E-value=0.0065  Score=50.18  Aligned_cols=26  Identities=31%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      -++++.++.|.|++|+|||||+..+.
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la   82 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAV   82 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999999977774

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=95.63  E-value=0.0023  Score=55.05  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=21.5

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      .+--++|+|+.|+|||||+++|.+.
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4455999999999999999999763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.62  E-value=0.0079  Score=45.53  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=21.4

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++-+.+.|+.|+|||+|.+++.+
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            4456688999999999999999964

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.62  E-value=0.0072  Score=45.21  Aligned_cols=21  Identities=19%  Similarity=0.248  Sum_probs=18.8

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++|+.||||||+.+.|+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.60  E-value=0.0069  Score=43.55  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.+.+.|+.|+|||||++.+..
T Consensus        38 ~~~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           38 IPHLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999999854

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=95.59  E-value=0.0021  Score=54.76  Aligned_cols=47  Identities=19%  Similarity=0.227  Sum_probs=26.7

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCc-ccccccEEEEeeEEEEEe
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVGFL  131 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~-~~e~G~Itq~i~ay~V~~  131 (139)
                      .....++|+|++|+|||||+++|.+..+. ....-++|.+...+.+.+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~   79 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMEL   79 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEE
Confidence            34567999999999999999999654432 123334555555555544

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.58  E-value=0.007  Score=45.94  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=19.0

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++++|+.||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=95.57  E-value=0.006  Score=52.55  Aligned_cols=45  Identities=27%  Similarity=0.232  Sum_probs=22.2

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCc-ccccccEEEEeeEEEEE
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVV-KSEFGGITQHIGAFVGF  130 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~-~~e~G~Itq~i~ay~V~  130 (139)
                      .+--++|+|+.++|||||+++|.+.... ....-+.|.++....+.
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~  277 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFI  277 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE
Confidence            3445999999999999999999654321 22333445554433333

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.56  E-value=0.0055  Score=46.72  Aligned_cols=25  Identities=32%  Similarity=0.425  Sum_probs=21.0

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHH
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTL  107 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L  107 (139)
                      .+..+.++.+.|++||||||++..+
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~   96 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQF   96 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHH
Confidence            3557899999999999999976654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.55  E-value=0.0062  Score=44.72  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=19.2

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -++++|..|+|||||++.+.+
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999964

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=95.53  E-value=0.0051  Score=55.16  Aligned_cols=25  Identities=32%  Similarity=0.515  Sum_probs=22.1

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.+.++|+||.|+|||||+++|..
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~   32 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILY   32 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999963

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.49  E-value=0.0067  Score=49.76  Aligned_cols=25  Identities=20%  Similarity=0.141  Sum_probs=22.2

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++.+.|+|++|+|||||++.|..
T Consensus        33 ~~~~~~~i~G~~G~GKs~~~~~~~~   57 (392)
T 4ag6_A           33 RTNSNWTILAKPGAGKSFTAKMLLL   57 (392)
T ss_dssp             BCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccCceEEEcCCCCCHHHHHHHHHH
Confidence            3678899999999999999999864

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.49  E-value=0.012  Score=47.05  Aligned_cols=28  Identities=29%  Similarity=0.463  Sum_probs=23.2

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      .++..++++|.++.|||||+|+|.+...
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCce
Confidence            3455789999999999999999977543

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.47  E-value=0.0079  Score=46.32  Aligned_cols=25  Identities=32%  Similarity=0.267  Sum_probs=21.8

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.++++.|+.|+||||+.+.|..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999999999854

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.46  E-value=0.0062  Score=51.39  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.6

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+.++|++|+||||+.++|.+
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4599999999999999998864

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=95.46  E-value=0.03  Score=43.52  Aligned_cols=32  Identities=22%  Similarity=0.202  Sum_probs=24.9

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcCCccc
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS  115 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~  115 (139)
                      ..+..-++++|+.|+|||||++.+.+..+...
T Consensus       152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~  183 (332)
T 2wkq_A          152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGE  183 (332)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCS
T ss_pred             ccceeEEEEECCCCCChHHHHHHHHhCCCCcc
Confidence            34556799999999999999999976544433

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.46  E-value=0.0041  Score=46.20  Aligned_cols=20  Identities=25%  Similarity=0.355  Sum_probs=18.0

Q ss_pred             CEEEEEeecCCchhHHHHHH
Q psy4669          88 PVVTIMGHVDHGKTTLLDTL  107 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L  107 (139)
                      --++++|+.|+|||||++.+
T Consensus        16 ~ki~v~G~~~~GKSsli~~~   35 (221)
T 3gj0_A           16 FKLVLVGDGGTGKTTFVKRH   35 (221)
T ss_dssp             EEEEEEECTTSSHHHHHTTB
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            45899999999999999984

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.44  E-value=0.0078  Score=50.34  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=21.9

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++++|+||.|+|||||-..|++
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHH
Confidence            3557999999999999999999964

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.40  E-value=0.0078  Score=47.58  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++.+.|.||.|+|||||++.+..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHH
Confidence            5577899999999999999999854

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=95.38  E-value=0.0059  Score=57.42  Aligned_cols=26  Identities=27%  Similarity=0.418  Sum_probs=24.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHH
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTL  103 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTL  103 (139)
                      ++++..+||+.+|+|.|.||||||||
T Consensus        35 kni~v~iP~~~lvv~tG~SGSGKSSL   60 (972)
T 2r6f_A           35 KNIDVEIPRGKLVVLTGLSGSGKSSL   60 (972)
T ss_dssp             CSEEEEEETTSEEEEEESTTSSHHHH
T ss_pred             CceeeeccCCcEEEEECCCCCCHHHH
Confidence            46788999999999999999999999

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.38  E-value=0.011  Score=46.07  Aligned_cols=22  Identities=32%  Similarity=0.376  Sum_probs=19.7

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+.+.||+|+|||||.++|.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3789999999999999999964

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.36  E-value=0.012  Score=45.50  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=21.5

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.++++.|+.|+||||+.+.|..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~   25 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVE   25 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999998864

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.35  E-value=0.011  Score=46.47  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=21.9

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.++++.|+.|+||||+.+.|..
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999999864

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.33  E-value=0.0028  Score=46.38  Aligned_cols=25  Identities=24%  Similarity=0.272  Sum_probs=21.3

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.--++++|+.|+|||||++.+.+
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            4556689999999999999999864

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.33  E-value=0.0091  Score=49.62  Aligned_cols=24  Identities=38%  Similarity=0.545  Sum_probs=21.4

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+++++|+||+|+|||||...|+.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHH
Confidence            457899999999999999999964

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=95.32  E-value=0.0081  Score=53.88  Aligned_cols=32  Identities=22%  Similarity=0.403  Sum_probs=26.5

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcCCccc
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKS  115 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~  115 (139)
                      ..++..++|+|+.++|||||+++|.+..+++.
T Consensus        66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v   97 (695)
T 2j69_A           66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPS   97 (695)
T ss_dssp             HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCC
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            45677899999999999999999987665543

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.29  E-value=0.013  Score=45.51  Aligned_cols=25  Identities=32%  Similarity=0.328  Sum_probs=22.5

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.++++.|+.|+||||+.+.|..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~   27 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYK   27 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999999865

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.28  E-value=0.0092  Score=46.71  Aligned_cols=25  Identities=32%  Similarity=0.320  Sum_probs=19.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.++++.|+.|+||||+.+.|..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999998854

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=95.24  E-value=0.0061  Score=55.90  Aligned_cols=25  Identities=40%  Similarity=0.670  Sum_probs=21.7

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.+.++|+||+|||||||+++|..
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~   41 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQ   41 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999964

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=95.23  E-value=0.0086  Score=50.27  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=21.1

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ..++|+|++++|||||+++|.+..
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~   26 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAG   26 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Confidence            458999999999999999997744

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.20  E-value=0.0098  Score=49.26  Aligned_cols=23  Identities=39%  Similarity=0.667  Sum_probs=20.5

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++++|+||+|+|||||-..|+.
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.20  E-value=0.011  Score=46.26  Aligned_cols=26  Identities=27%  Similarity=0.175  Sum_probs=22.5

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++.++++.|..|+||||+.+.|..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999998854

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.17  E-value=0.013  Score=45.73  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=20.2

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++.|.|+.|+|||||++.+..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~   52 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGIN   52 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            7999999999999999998854

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.15  E-value=0.0096  Score=49.70  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=20.1

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|+||+|+|||||-..|+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5899999999999999998864

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.12  E-value=0.0097  Score=51.05  Aligned_cols=24  Identities=33%  Similarity=0.469  Sum_probs=21.7

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .++.++.++|++|+||||++..|+
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA  118 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLA  118 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            367899999999999999999886

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.11  E-value=0.01  Score=49.60  Aligned_cols=22  Identities=36%  Similarity=0.582  Sum_probs=19.7

Q ss_pred             EEEEEeecCCchhHHHHHHHhc
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      .++|+|++|+|||||+++|.+.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.10  E-value=0.012  Score=50.99  Aligned_cols=20  Identities=25%  Similarity=0.424  Sum_probs=18.7

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+.||+|+|||||.++|.+
T Consensus        52 vLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           52 ILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999965

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.09  E-value=0.013  Score=45.70  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=20.9

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++.|.|+.|+|||||++.+..
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~   53 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLN   53 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHH
Confidence            58999999999999999999854

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.09  E-value=0.015  Score=46.26  Aligned_cols=24  Identities=21%  Similarity=0.130  Sum_probs=21.2

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+.|.|+.|+|||||++.+..
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            466899999999999999999954

>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6

Probab=95.02  E-value=0.013  Score=34.63  Aligned_cols=46  Identities=13%  Similarity=0.069  Sum_probs=33.1

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHh
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKS   50 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~   50 (139)
                      ++|.+||+.+++++.+++..|-..|. . -+.++ .++++ ....+-..|
T Consensus         3 ~rv~~lAkel~~~~k~l~~~l~~~g~-~-k~~~s-~l~~~-~~~~l~~~~   48 (49)
T 1nd9_A            3 VTIKTLAAERQTSVERLVQQFADAGI-R-KSADD-SVSAQ-EKQTLIDHL   48 (49)
T ss_dssp             ECTTHHHHHHSSSHHHHHHHHHHHTS-C-CSSSS-CEETT-GGGHHHHHH
T ss_pred             ccHHHHHHHHCcCHHHHHHHHHHcCC-C-CCCCC-cCCHH-HHHHHHHHh
Confidence            47899999999999999999998874 2 24444 67755 344444443

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.98  E-value=0.013  Score=46.15  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.6

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+.+.||.|+|||||.+++.+
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=94.97  E-value=0.018  Score=45.74  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=20.9

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+..+.+.||.|+|||+|.++|+.
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3455777889999999999999964

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.96  E-value=0.014  Score=49.99  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.4

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++|+||+|+|||||...|+.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHH
Confidence            46899999999999999998864

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=94.95  E-value=0.017  Score=49.93  Aligned_cols=30  Identities=23%  Similarity=0.225  Sum_probs=26.0

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+.+.++..++|+|++|+|||||++.|.+
T Consensus       167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar  196 (422)
T 3ice_A          167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQ  196 (422)
T ss_dssp             HHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred             eeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence            345688999999999999999999998843

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=94.94  E-value=0.016  Score=45.89  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=21.7

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ..++++|.+|+|||||+++|.+...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            5789999999999999999976443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.94  E-value=0.012  Score=49.67  Aligned_cols=23  Identities=39%  Similarity=0.470  Sum_probs=20.6

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.+.|.|++|+|||||+++|.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999999954

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.91  E-value=0.017  Score=48.78  Aligned_cols=27  Identities=15%  Similarity=0.257  Sum_probs=24.3

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -++++.++.|.|++|+|||||+..+..
T Consensus       199 Gl~~G~liiI~G~pG~GKTtl~l~ia~  225 (454)
T 2r6a_A          199 GFQRSDLIIVAARPSVGKTAFALNIAQ  225 (454)
T ss_dssp             SBCTTCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999999888743

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=94.85  E-value=0.01  Score=48.97  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=23.1

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      .+-.+-|+++|+.++|||||+++|.+..
T Consensus       155 Lk~la~V~lvG~~nvGKSTLln~L~~~~  182 (342)
T 1lnz_A          155 LKVLADVGLVGFPSVGKSTLLSVVSSAK  182 (342)
T ss_dssp             EECCCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred             hhhcCeeeeeCCCCCCHHHHHHHHHcCC
Confidence            3345679999999999999999996543

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.85  E-value=0.019  Score=42.89  Aligned_cols=22  Identities=32%  Similarity=0.350  Sum_probs=18.6

Q ss_pred             CCCEEEEEeecCCchhHHH-HHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLL-DTL  107 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL-~~L  107 (139)
                      ++.++.+.|+.|+||||++ +.+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHH
Confidence            3679999999999999997 444

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=94.82  E-value=0.024  Score=43.00  Aligned_cols=28  Identities=25%  Similarity=0.267  Sum_probs=24.7

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .....+..++.+.|..|+|||||+..|.
T Consensus         8 ~~~~~~~~i~~~~GkgGvGKTTl~~~La   35 (262)
T 1yrb_A            8 HHHGMASMIVVFVGTAGSGKTTLTGEFG   35 (262)
T ss_dssp             CCTTCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccCCcceEEEEEeCCCCCCHHHHHHHHH
Confidence            3456788999999999999999999996

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.79  E-value=0.021  Score=44.36  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=20.4

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+..+.+.|+.|+|||+|.+++..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            355789999999999999988754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.77  E-value=0.017  Score=44.51  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+..+.+.|+.|+|||+|.+++..
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345678999999999999999964

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=94.75  E-value=0.018  Score=45.22  Aligned_cols=29  Identities=21%  Similarity=0.064  Sum_probs=24.5

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++....+..+.|+|++|+|||||...|..
T Consensus        28 ~~v~~~g~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           28 VLVDIYGLGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             EEEEETTEEEEEECCCTTTTHHHHHHHHT
T ss_pred             EEEEECCEEEEEECCCCCCHHHHHHHHHH
Confidence            34556788899999999999999999865

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.70  E-value=0.016  Score=44.14  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      --++++|..|+|||||++.+.+
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999999964

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.64  E-value=0.0089  Score=45.83  Aligned_cols=20  Identities=30%  Similarity=0.443  Sum_probs=18.4

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+.|++|+|||+|.++|.+
T Consensus        47 vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            77899999999999999975

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=94.63  E-value=0.015  Score=51.00  Aligned_cols=29  Identities=10%  Similarity=0.206  Sum_probs=25.5

Q ss_pred             CccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          81 SVLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        81 ~~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+++.+.|-+.|.|.+||||||+|++|..
T Consensus       161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          161 VADLAKMPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence            45677899999999999999999999854

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=94.62  E-value=0.0065  Score=52.49  Aligned_cols=27  Identities=37%  Similarity=0.522  Sum_probs=23.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      .++..++|+|+.++|||||+++|.+..
T Consensus       241 r~~~kV~ivG~pnvGKSSLln~L~~~~  267 (482)
T 1xzp_A          241 NRGLRMVIVGKPNVGKSTLLNRLLNED  267 (482)
T ss_dssp             HHCEEEEEECCHHHHTCHHHHHHHHHT
T ss_pred             cCCCEEEEECcCCCcHHHHHHHHHCCC
Confidence            345679999999999999999998753

>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A

Probab=94.52  E-value=0.067  Score=34.23  Aligned_cols=51  Identities=12%  Similarity=0.175  Sum_probs=34.3

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMV   56 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~   56 (139)
                      +|++|||+.+|++.+-|=+.|-..+....+++++     .+-+..+++++||.+..
T Consensus         1 ~T~~diA~~aGVS~sTVSrvLng~~~~~~vs~et-----~~rI~~aa~~lgY~pn~   51 (65)
T 1uxc_A            1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKT-----VEKVMAVVREHNYHPNA   51 (65)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHH-----HHHHHHHHHHHTCCCC-
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHH-----HHHHHHHHHHhCCCccH
Confidence            6899999999999999999885442000122221     23455678899997654

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.50  E-value=0.021  Score=45.20  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=20.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+.+.|.|+.|+|||+|.+++..
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHH
Confidence            345689999999999999999964

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.49  E-value=0.018  Score=44.48  Aligned_cols=25  Identities=24%  Similarity=0.262  Sum_probs=21.5

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++.+.+.|+.|+|||+|.+++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            4556788999999999999999965

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1g7sa4	227	c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-	1e-14
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	1e-09
d2bv3a2	276	c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-t	2e-09
d2dy1a2	267	c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-t	9e-09
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	7e-08
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	2e-07
d1kk1a3	195	c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su	2e-07
d1r5ba3	245	c.37.1.8 (A:215-459) Eukaryotic peptide chain rele	1e-06
d1n0ua2	341	c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-	4e-06
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	4e-06
d1d2ea3	196	c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),	5e-06
d1wb1a4	179	c.37.1.8 (A:1-179) Elongation factor SelB, N-termi	2e-05
d1jnya3	224	c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N	5e-05
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	5e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	9e-05
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	1e-04
d1zunb3	222	c.37.1.8 (B:16-237) Sulfate adenylate transferase	1e-04
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	2e-04
d1f60a3	239	c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N	3e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	5e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	6e-04

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 65.9 bits (159), Expect = 1e-14
 Identities = 29/44 (65%), Positives = 36/44 (81%), Gaps = 1/44 (2%)

Query: 84  MK-RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA 126
           MK R P+V+++GHVDHGKTTLLD +R ++V   E GGITQHIGA
Sbjct: 1   MKIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGA 44

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 52.3 bits (124), Expect = 1e-09
 Identities = 8/38 (21%), Positives = 12/38 (31%)

Query: 89  VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA 126
           +V  +G    GKTTL            +   +    G 
Sbjct: 2   IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGV 39

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 52.0 bits (124), Expect = 2e-09
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 5/42 (11%)

Query: 90  VTIMGHVDHGKTTLLDTLRNTSVV-----KSEFGGITQHIGA 126
           + I  H+D GKTT  + +   +       +   G  T     
Sbjct: 9   IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFME 50

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} Length = 267

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

 Score = 49.9 bits (118), Expect = 9e-09
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 90  VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGA 126
           V ++GH   GKTTL + L   +  K   G + +    
Sbjct: 5   VALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTT 41

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (111), Expect = 7e-08
 Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 5/46 (10%)

Query: 88  PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYH 133
           P + I G  + GKT+LL  L                        Y 
Sbjct: 4   PSIIIAGPQNSGKTSLLTLLTT-----DSVRPTVVSQEPLSAADYD 44

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 45.7 bits (107), Expect = 2e-07
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 86  RPPV-VTIMGHVDHGKTTLLDTLRNTSVVKSE 116
           +P V + ++GHVDHGKTTL+  +      K  
Sbjct: 6   QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHS 37

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

 Score = 45.4 bits (106), Expect = 2e-07
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 85  KRPPV-VTIMGHVDHGKTTLLDTLRNT---SVVKSEFGGITQHIGAF 127
           ++  V + ++GHVDHGKTTL   L      +  +    GIT  IG  
Sbjct: 2   RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFA 48

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.7 bits (102), Expect = 1e-06
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 83  LMKRPPV-VTIMGHVDHGKTTLLDTL 107
           +  +  V +  +GHVD GK+TL   +
Sbjct: 19  MYGKEHVNIVFIGHVDAGKSTLGGNI 44

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.4 bits (99), Expect = 4e-06
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 16/53 (30%)

Query: 90  VTIMGHVDHGKTTLLDTLRNTSVVKSEFG----------------GITQHIGA 126
           ++++ HVDHGK+TL D+L   + + S                   GIT    A
Sbjct: 20  MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTA 72

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 41.9 bits (98), Expect = 4e-06
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 17/54 (31%)

Query: 90  VTIMGHVDHGKTTLLDTLRNTSVVKSEFG-----------------GITQHIGA 126
           V  +GHVDHGKTTL   L   +  ++                    GIT +   
Sbjct: 6   VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAH 59

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 41.9 bits (98), Expect = 5e-06
 Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 16/54 (29%)

Query: 90  VTIMGHVDHGKTTLLDTLRNTS----------------VVKSEFGGITQHIGAF 127
           V  +GHVDHGKTTL   +                      +    GIT +    
Sbjct: 6   VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHV 59

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 40.1 bits (92), Expect = 2e-05
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 90  VTIMGHVDHGKTTLLDTLRNTSVV 113
           + I GH+DHGKTTL   L   +  
Sbjct: 8   LGIFGHIDHGKTTLSKVLTEIAST 31

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 39.4 bits (91), Expect = 5e-05
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 90  VTIMGHVDHGKTTLLDTL 107
           + ++GHVDHGK+TL+  L
Sbjct: 6   LIVIGHVDHGKSTLVGRL 23

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 5e-05
 Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 1/39 (2%)

Query: 90  VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFV 128
           V  +G  D GKT L   L       +    IT     + 
Sbjct: 3   VLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYK 40

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.1 bits (87), Expect = 9e-05
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 84  MKRPPVVTIMGHVDHGKTTLLDTLRNTSVV 113
           +     V I+G  + GK+TL + + N    
Sbjct: 5   ITDAIKVAIVGRPNVGKSTLFNAILNKERA 34

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 1e-04
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 85  KRPPVVTIMGHVDHGKTTLLDTL--RNTSVVKSEFGGITQHIGAF 127
                + I+G  + GK+TLL+ L  +  S+   +       I   
Sbjct: 3   SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGI 47

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 92  IMGHVDHGKTTLLDTL 107
             G+VD GK+TL+  L
Sbjct: 14  TCGNVDDGKSTLIGRL 29

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 37.0 bits (84), Expect = 2e-04
 Identities = 11/48 (22%), Positives = 15/48 (31%)

Query: 86  RPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLYH 133
               V I+G  + GK+TLL+ L    V        T            
Sbjct: 4   YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG 51

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 85  KRPPV-VTIMGHVDHGKTTLLDTL 107
           ++  + V ++GHVD GK+T    L
Sbjct: 3   EKSHINVVVIGHVDSGKSTTTGHL 26

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.2 bits (82), Expect = 5e-04
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 90  VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH 123
           +   G  + GK+TL+  L    V + +  G+T+ 
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK 36

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.9 bits (81), Expect = 6e-04
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 90  VTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQHI 124
           V I+G  + GK+TL + L         +  G+T+  
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDP 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.86
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.86
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.84
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.81
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.81
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.8
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.79
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.79
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.77
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.77
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.74
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.73
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.73
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.7
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.69
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.66
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.65
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.63
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.61
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.53
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.53
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.24
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.15
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.1
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.08
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.99
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.99
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.88
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.79
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.79
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.76
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.74
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.65
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.63
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.59
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.58
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.56
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.55
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.52
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.47
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.47
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.46
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.44
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.44
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.44
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.43
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.43
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.42
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.42
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.41
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	97.41
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.41
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.4
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.39
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.38
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.38
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.37
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.35
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.35
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.34
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.33
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.33
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.32
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.32
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.31
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.29
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.27
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.27
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.26
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.26
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.23
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.23
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.22
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.18
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.18
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.17
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.17
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.15
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.14
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.04
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.04
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.02
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.02
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.01
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.0
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.0
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.99
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.98
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.98
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.95
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.95
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.94
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.91
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.9
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.89
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.89
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.89
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.87
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.84
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.84
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.82
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.8
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.78
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.78
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.77
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.76
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.73
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.72
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.71
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.67
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.67
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.64
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.59
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.56
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.56
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.55
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.52
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.52
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.47
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.47
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.46
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.39
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.38
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.37
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.33
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.32
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.32
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.31
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.31
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.31
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.29
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.28
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.27
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.25
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.24
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.23
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.21
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.18
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.18
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.16
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.16
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.12
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.11
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.11
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.1
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.07
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.06
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.02
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.02
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.0
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.98
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.96
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.95
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.91
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.89
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.87
d1uxda_	59	Fructose repressor (FruR), N-terminal domain {Esch	95.84
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.83
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.8
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.78
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.78
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.78
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.77
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.73
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.73
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.71
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.71
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.69
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.68
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.65
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.62
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.58
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.56
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.55
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.55
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.54
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.54
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.54
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.53
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.52
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.52
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.51
d1okkd2	207	GTPase domain of the signal recognition particle r	95.5
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.49
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.38
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.35
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.32
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.23
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.22
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.21
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.12
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.08
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.07
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.04
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.01
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.99
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.99
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.85
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.81
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.75
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.69
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.67
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.66
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	94.63
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.56
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.54
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.53
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.48
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.41
d1nd9a_	49	N-terminal subdomain of bacterial translation init	94.36
d1ls1a2	207	GTPase domain of the signal sequence recognition p	94.31
d2hsga1	57	Glucose-resistance amylase regulator CcpA, N-termi	94.19
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.06
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.03
d1efaa1	59	Lac repressor (LacR), N-terminal domain {Escherich	93.94
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.76
d1qpza1	57	Purine repressor (PurR), N-terminal domain {Escher	93.74
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.52
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	93.52
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.12
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	92.95
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	92.36
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.29
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	92.22
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.15
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	92.04
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	92.01
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	92.01
d2icta1	87	Antitoxin HigA {Escherichia coli [TaxId: 562]}	91.96
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	91.52
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	91.29
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.27
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.25
d2a6ca1	69	HTH-motif protein NE1354 {Nitrosomonas europaea [T	90.72
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	90.66
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	90.6
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	90.5
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.27
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	90.17
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	90.07
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	89.11
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	88.92
d1xpua3	289	Transcription termination factor Rho, ATPase domai	88.82
d1y9qa1	79	Probable transcriptional regulator VC1968, N-termi	88.64
d1y7ya1	69	Restriction-modification controller protein C.AhdI	88.36
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	88.23
d1b0na2	68	SinR repressor, DNA-binding domain {Bacillus subti	87.56
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.5
d2r1jl1	66	P22 C2 repressor, DNA-binding domain {Salmonella b	87.48
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	87.42
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	87.2
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	87.1
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	86.61
d1utxa_	66	Putative transcription regulator CylR2 {Enterococc	86.48
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	86.02
d1l0oc_	57	SigmaF {Bacillus stearothermophilus [TaxId: 1422]}	85.69
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.59
d2o3fa1	83	Putative transcriptional regulator YbbH {Bacillus	84.93
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	84.84
d2b5aa1	77	Regulatory protein C.BclI {Bacillus caldolyticus [	84.7
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.58
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	84.19
d1r69a_	63	434 C1 repressor, DNA-binding domain {Bacteriophag	84.17
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	83.57
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	83.42
d2croa_	65	cro 434 {Bacteriophage 434 [TaxId: 10712]}	83.32
d1x57a1	78	Endothelial differentiation-related factor 1, EDF1	83.13
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.87
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	82.33
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	82.23
d2dt5a1	74	Transcriptional repressor Rex, N-terminal domain {	81.54
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	80.56

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.86  E-value=2.9e-10  Score=86.38  Aligned_cols=43  Identities=30%  Similarity=0.376  Sum_probs=39.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      ++.++.+++|.+++|+||||||||||+++|  +++.++..|.|.-
T Consensus        18 ~~is~~i~~Gei~~l~G~NGsGKSTLl~~i--~gl~~p~~G~I~~   60 (200)
T d1sgwa_          18 ERITMTIEKGNVVNFHGPNGIGKTTLLKTI--STYLKPLKGEIIY   60 (200)
T ss_dssp             EEEEEEEETTCCEEEECCTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred             eceEEEEcCCCEEEEECCCCChHHHHHHHH--hcccccCCCEEEE
Confidence            367899999999999999999999999999  9999999998864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=3.3e-10  Score=88.72  Aligned_cols=42  Identities=21%  Similarity=0.307  Sum_probs=36.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      ++.++.++++++++|+|||||||||||++|  +++.++..|.|+
T Consensus        17 ~~isl~i~~Gei~~liGpsGsGKSTLl~~i--~Gl~~p~sG~I~   58 (232)
T d2awna2          17 KDINLDIHEGEFVVFVGPSGCGKSTLLRMI--AGLETITSGDLF   58 (232)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred             eeeEEEEcCCCEEEEECCCCChHHHHHHHH--hcCCCCCCCEEE
Confidence            357899999999999999999999999999  666777777664

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.84  E-value=4.3e-10  Score=87.91  Aligned_cols=42  Identities=26%  Similarity=0.405  Sum_probs=38.5

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++++++|+|||||||||||++|  +++..+..|.|.
T Consensus        22 ~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i--~gl~~p~sG~I~   63 (230)
T d1l2ta_          22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNII--GCLDKPTEGEVY   63 (230)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred             eceEEEEcCCCEEEEECCCCCCcchhhHhc--cCCCCCCcceeE
Confidence            357899999999999999999999999999  888888888876

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.81  E-value=6.5e-10  Score=86.92  Aligned_cols=43  Identities=28%  Similarity=0.424  Sum_probs=39.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      ++.++.++++++++|+||||||||||+++|  +++.++..|.|+-
T Consensus        23 ~~vs~~i~~Gei~~liGpnGaGKSTl~~~i--~Gl~~p~~G~I~~   65 (240)
T d1ji0a_          23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAI--AGLVRAQKGKIIF   65 (240)
T ss_dssp             EEEEEEEETTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred             eeeeEEECCCCEEEEECCCCCcHHHHHHHH--hCCCCCCccEEEe
Confidence            367899999999999999999999999999  8899999998863

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=7.5e-10  Score=87.08  Aligned_cols=43  Identities=16%  Similarity=0.294  Sum_probs=39.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      ++.++.++++++++|+||||||||||+++|  .++.++..|.|.-
T Consensus        22 ~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i--~Gl~~p~sG~I~~   64 (240)
T d3dhwc1          22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCV--NLLERPTEGSVLV   64 (240)
T ss_dssp             EEEEEEECSSCEEEEEESTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred             eceeEEEcCCCEEEEECCCCCCHHHHHHHH--cCCccccCCceEE
Confidence            467899999999999999999999999999  8888888888753

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.80  E-value=6.7e-10  Score=87.36  Aligned_cols=42  Identities=21%  Similarity=0.311  Sum_probs=36.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +++++.++++++++|+||||||||||+++|  +++.++..|.|+
T Consensus        23 ~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i--~Gl~~p~sG~I~   64 (239)
T d1v43a3          23 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMI--AGLEEPTEGRIY   64 (239)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred             cceeEEECCCCEEEEECCCCChHHHHHHHH--HcCCCCCCCEEE
Confidence            357899999999999999999999999999  777777777664

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.79  E-value=7.4e-10  Score=84.26  Aligned_cols=47  Identities=57%  Similarity=0.889  Sum_probs=37.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL  131 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~  131 (139)
                      -|+|+++|+||++||||||+++|.+......+.|+++.++++..+..
T Consensus         3 ~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~   49 (227)
T d1g7sa4           3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPM   49 (227)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEH
T ss_pred             CCCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeecccccccc
Confidence            58899999999999999999999887777788889999888877654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.79  E-value=1e-09  Score=86.23  Aligned_cols=43  Identities=26%  Similarity=0.416  Sum_probs=39.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      +++++.++++++++|+||||||||||+++|  +|+.++..|.|+-
T Consensus        21 ~~vs~~v~~Gei~~liG~nGaGKSTLl~~i--~Gl~~p~~G~I~~   63 (254)
T d1g6ha_          21 DGVSISVNKGDVTLIIGPNGSGKSTLINVI--TGFLKADEGRVYF   63 (254)
T ss_dssp             EEECCEEETTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred             cceEEEECCCCEEEEECCCCCcHHHHHHHH--HCCCcCCCcEEEE
Confidence            367899999999999999999999999999  8889999998864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.77  E-value=6.5e-10  Score=86.94  Aligned_cols=43  Identities=21%  Similarity=0.298  Sum_probs=38.7

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      ++.++.++++++++|+||||||||||+++|  +++..+..|.|+-
T Consensus        17 ~~vs~~i~~Ge~~~liGpsGaGKSTll~~l--~Gl~~p~sG~I~~   59 (229)
T d3d31a2          17 DNLSLKVESGEYFVILGPTGAGKTLFLELI--AGFHVPDSGRILL   59 (229)
T ss_dssp             EEEEEEECTTCEEEEECCCTHHHHHHHHHH--HTSSCCSEEEEEE
T ss_pred             eeeEEEECCCCEEEEECCCCCcHHHHHHHH--hcCcCCCCCEEEE
Confidence            357899999999999999999999999999  8888888888753

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.77  E-value=9.1e-10  Score=86.58  Aligned_cols=42  Identities=24%  Similarity=0.318  Sum_probs=38.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      ++.++.++++++++|+||||||||||+++|  +++..+..|.|.
T Consensus        20 ~~vsl~i~~Ge~~~liG~sGaGKSTll~~i--~gl~~p~sG~I~   61 (240)
T d1g2912          20 REMSLEVKDGEFMILLGPSGCGKTTTLRMI--AGLEEPSRGQIY   61 (240)
T ss_dssp             EEEEEEEETTCEEEEECSTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred             cceeeEEcCCCEEEEECCCCChHHHHHHHH--hcCCCCCCCEEE
Confidence            357899999999999999999999999999  788888888884

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.74  E-value=7.4e-10  Score=87.30  Aligned_cols=43  Identities=16%  Similarity=0.256  Sum_probs=38.3

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      ++.++.++++++++|+||||||||||+++|  .++.++..|.|.-
T Consensus        22 ~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i--~gl~~p~~G~I~~   64 (242)
T d1oxxk2          22 DNVNINIENGERFGILGPSGAGKTTFMRII--AGLDVPSTGELYF   64 (242)
T ss_dssp             EEEEEEECTTCEEEEECSCHHHHHHHHHHH--HTSSCCSEEEEEE
T ss_pred             eceEEEECCCCEEEEECCCCCcHHHHHHHH--HcCcCCCCceEEE
Confidence            367899999999999999999999999999  7788888887653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.73  E-value=1.7e-09  Score=84.47  Aligned_cols=42  Identities=24%  Similarity=0.355  Sum_probs=39.1

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      ++.++.++++++++|+||||+|||||+++|  +++..+..|.|+
T Consensus        19 ~~vs~~v~~Gei~glvG~nGaGKSTLl~~l--~G~~~p~~G~i~   60 (238)
T d1vpla_          19 KGISFEIEEGEIFGLIGPNGAGKTTTLRII--STLIKPSSGIVT   60 (238)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred             ccceeEEcCCCEEEEECCCCCCHHHHHHHH--hcCCCCCCCEEE
Confidence            357899999999999999999999999999  889999999886

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.73  E-value=1.7e-09  Score=85.39  Aligned_cols=43  Identities=26%  Similarity=0.370  Sum_probs=39.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      ++.++.++++++++|+||||||||||+++|  .++.++..|.|.-
T Consensus        19 ~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i--~Gl~~p~~G~I~~   61 (258)
T d1b0ua_          19 KGVSLQARAGDVISIIGSSGSGKSTFLRCI--NFLEKPSEGAIIV   61 (258)
T ss_dssp             EEEEEEECTTCEEEEECCTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred             cceeeEEcCCCEEEEECCCCCcHHHHHHHH--HcCccCCCCCEEE
Confidence            467899999999999999999999999999  8888888998863

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.70  E-value=2.9e-09  Score=83.26  Aligned_cols=43  Identities=23%  Similarity=0.320  Sum_probs=38.9

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+||||||||||+++|  .++..+..|.|.-
T Consensus        19 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll--~gl~~p~~G~I~i   61 (242)
T d1mv5a_          19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITI   61 (242)
T ss_dssp             EEEEEEECTTEEEEEECCTTSSHHHHHHHH--TTSSCCSBSCEEE
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HHhhCCCCCEEEE
Confidence            468899999999999999999999999999  8888888888753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.2e-09  Score=83.38  Aligned_cols=42  Identities=17%  Similarity=0.272  Sum_probs=39.0

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||||||||+++|  .++.++..|.|+
T Consensus        31 ~~isl~i~~Ge~vaivG~sGsGKSTLl~li--~gl~~p~~G~I~   72 (251)
T d1jj7a_          31 QGLTFTLRPGEVTALVGPNGSGKSTVAALL--QNLYQPTGGQLL   72 (251)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEE
T ss_pred             eceEEEEcCCCEEEEECCCCCcHHHHHHHH--hcccCCCcCEEE
Confidence            467899999999999999999999999999  899999999886

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.66  E-value=4e-09  Score=82.89  Aligned_cols=42  Identities=19%  Similarity=0.298  Sum_probs=38.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+||||||||||+++|  .++.++..|.|+
T Consensus        32 ~~isl~i~~Ge~iaivG~sGsGKSTLl~ll--~gl~~p~~G~I~   73 (253)
T d3b60a1          32 RNINLKIPAGKTVALVGRSGSGKSTIASLI--TRFYDIDEGHIL   73 (253)
T ss_dssp             EEEEEEECTTCEEEEEECTTSSHHHHHHHH--TTTTCCSEEEEE
T ss_pred             eceEEEEcCCCEEEEECCCCChHHHHHHHH--hcccCCCccEEE
Confidence            468899999999999999999999999999  888888888876

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=4.2e-09  Score=83.89  Aligned_cols=43  Identities=21%  Similarity=0.329  Sum_probs=38.8

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+||||||||||+++|  .|+.++..|.|.-
T Consensus        53 ~~isl~i~~Ge~vaivG~nGsGKSTLl~~i--~Gl~~p~~G~I~~   95 (281)
T d1r0wa_          53 KNINLNIEKGEMLAITGSTGSGKTSLLMLI--LGELEASEGIIKH   95 (281)
T ss_dssp             EEEEEEECTTCEEEEEESTTSSHHHHHHHH--HTSSCCSEEEEEC
T ss_pred             eCeEEEEcCCCEEEEECCCCChHHHHHHHH--hCCCcCCCcEEEE
Confidence            467899999999999999999999999999  8888888887754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=5.6e-09  Score=81.65  Aligned_cols=43  Identities=23%  Similarity=0.340  Sum_probs=39.2

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQ  122 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq  122 (139)
                      .+.++.++++.+++|+|+||||||||+++|  .++.++..|.|.-
T Consensus        20 ~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll--~gl~~p~~G~I~i   62 (241)
T d2pmka1          20 DNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENGQVLI   62 (241)
T ss_dssp             EEEEEEEETTCEEEEECSTTSSHHHHHHHH--TTSSCCSEEEEEE
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHH--HhcCCCCCCEEEE
Confidence            468899999999999999999999999999  8888888888753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=6.4e-09  Score=80.48  Aligned_cols=41  Identities=22%  Similarity=0.331  Sum_probs=35.4

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.+++|++++|+||||||||||+++|  +++.+ ..|.|+
T Consensus        16 ~~isl~I~~Gei~~iiG~nGaGKSTLl~~l--~Gl~~-~~G~I~   56 (231)
T d1l7vc_          16 GPLSGEVRAGEILHLVGPNGAGKSTLLARM--AGMTS-GKGSIQ   56 (231)
T ss_dssp             CSEEEEEETTCEEECBCCTTSSHHHHHHHH--HTSCC-CSSEEE
T ss_pred             cCEEEEEcCCCEEEEECCCCCcHHHHHHHH--hCCCC-CceEEE
Confidence            468999999999999999999999999999  55554 568775

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.53  E-value=1.4e-08  Score=79.80  Aligned_cols=40  Identities=20%  Similarity=0.417  Sum_probs=32.5

Q ss_pred             CCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          79 DPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        79 ~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      +.++.+. ..+++|+||||||||||+++|  +|+.++..|.|.
T Consensus        17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i--~Gl~~p~~G~I~   56 (240)
T d2onka1          17 NVDFEMG-RDYCVLLGPTGAGKSVFLELI--AGIVKPDRGEVR   56 (240)
T ss_dssp             EEEEEEC-SSEEEEECCTTSSHHHHHHHH--HTSSCCSEEEEE
T ss_pred             EEEEEeC-CEEEEEECCCCChHHHHHHHH--HcCCCCCceEEE
Confidence            3556665 479999999999999999999  777777777764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.53  E-value=8.5e-09  Score=81.30  Aligned_cols=42  Identities=21%  Similarity=0.353  Sum_probs=38.6

Q ss_pred             CCCCccccCCCEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          78 ADPSVLMKRPPVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        78 ~~~~~~~~r~pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      .+.++.++++.+++|+|+||||||||++.|  .++..+..|.|.
T Consensus        35 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll--~gl~~p~~G~I~   76 (255)
T d2hyda1          35 KDINLSIEKGETVAFVGMSGGGKSTLINLI--PRFYDVTSGQIL   76 (255)
T ss_dssp             EEEEEEECTTCEEEEECSTTSSHHHHHTTT--TTSSCCSEEEEE
T ss_pred             eceEEEEcCCCEEEEECCCCCcHHHHHHHH--HhcCCccccccc
Confidence            468899999999999999999999999999  888888888875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.24  E-value=1.3e-07  Score=66.74  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=25.9

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcccccccEEEE
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQH  123 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~  123 (139)
                      +.|+||+|||||||+++|  ++......|+++.+
T Consensus         3 i~I~G~~G~GKSTLl~~i--~~~l~~~~g~~~~~   34 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKI--VERLGKRAIGFWTE   34 (178)
T ss_dssp             EEEECCTTSSHHHHHHHH--HHHHGGGEEEEEEE
T ss_pred             EEEECCCCcHHHHHHHHH--HhcCCCCcceEEEC
Confidence            789999999999999999  55666666666543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.15  E-value=5.7e-07  Score=65.89  Aligned_cols=39  Identities=41%  Similarity=0.508  Sum_probs=27.0

Q ss_pred             EEEEEeecCCchhHHHHHHHhcC---CcccccccEEEEeeEE
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTS---VVKSEFGGITQHIGAF  127 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~---v~~~e~G~Itq~i~ay  127 (139)
                      .++|+||+|||||||+++|.+..   .......++|++++.-
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~   48 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFA   48 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEE
T ss_pred             EEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchh
Confidence            36999999999999999996521   1222345677776643

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=6.6e-07  Score=62.07  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=21.0

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -||++|+|++|||||||++.|..
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            48999999999999999999963

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.08  E-value=1.4e-06  Score=64.47  Aligned_cols=25  Identities=48%  Similarity=0.917  Sum_probs=21.1

Q ss_pred             cCCCE-EEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPV-VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pv-v~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++.+ ++|+||+|||||||+++|.+
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHh
Confidence            34544 99999999999999999964

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.99  E-value=8.7e-07  Score=65.03  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=25.9

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCcccccccEEEEee
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIG  125 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~  125 (139)
                      |++|+||.|||||||++.|..........+-|+.+.|
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~   38 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG   38 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCcc
Confidence            7899999999999999999642222334444544443

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.99  E-value=2.8e-06  Score=63.51  Aligned_cols=44  Identities=32%  Similarity=0.351  Sum_probs=31.1

Q ss_pred             EEEEEeecCCchhHHHHHHHhc----------------CCcccccccEEEEeeEEEEEee
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNT----------------SVVKSEFGGITQHIGAFVGFLY  132 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~----------------~v~~~e~G~Itq~i~ay~V~~~  132 (139)
                      .++|+||+|||||||+++|.+.                ........|||.+.+.+.+...
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~   64 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA   64 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEec
Confidence            3899999999999999999641                1111223478988877766543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.88  E-value=6e-06  Score=59.48  Aligned_cols=24  Identities=25%  Similarity=0.585  Sum_probs=21.3

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhc
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      -|.++|+|+.|+|||||+++|.+.
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCC
Confidence            367999999999999999999653

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.79  E-value=3.3e-06  Score=65.07  Aligned_cols=20  Identities=40%  Similarity=0.649  Sum_probs=18.5

Q ss_pred             EEEEEeecCCchhHHHHHHH
Q psy4669          89 VVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~  108 (139)
                      .++|+||+|||||||+++|.
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHH
T ss_pred             EEEEEeeCCCCHHHHHHHHH
Confidence            39999999999999999994

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.79  E-value=5.5e-06  Score=58.49  Aligned_cols=40  Identities=25%  Similarity=0.376  Sum_probs=30.4

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEE
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFV  128 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~  128 (139)
                      -|+++|+.++|||||+++|.+..+.....-+.|+++..|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~   41 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE   41 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecccccc
Confidence            3789999999999999999876655444445677766553

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=6.8e-06  Score=57.76  Aligned_cols=26  Identities=31%  Similarity=0.538  Sum_probs=22.1

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      .+|+++|++++|||||+|+|.+..+.
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~   31 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKIS   31 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEE
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCce
Confidence            46899999999999999999765443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.74  E-value=6e-06  Score=61.68  Aligned_cols=20  Identities=60%  Similarity=0.838  Sum_probs=18.4

Q ss_pred             EEEEEeecCCchhHHHHHHH
Q psy4669          89 VVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~  108 (139)
                      .++++||+|||||||+++|.
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHH
Confidence            38999999999999999995

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.65  E-value=1e-05  Score=60.81  Aligned_cols=20  Identities=50%  Similarity=0.876  Sum_probs=18.2

Q ss_pred             EEEEEeecCCchhHHHHHHH
Q psy4669          89 VVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~  108 (139)
                      .++++||+|||||||+++|.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHH
Confidence            48999999999999999884

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=1.6e-05  Score=56.94  Aligned_cols=26  Identities=42%  Similarity=0.624  Sum_probs=22.5

Q ss_pred             CCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      -|.|+|+|+.++|||||+++|.+..+
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~   28 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSV   28 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            37899999999999999999976443

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.59  E-value=2.7e-05  Score=55.10  Aligned_cols=24  Identities=33%  Similarity=0.540  Sum_probs=20.9

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCC
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      -|+|+|++|+|||||+++|.+...
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~~   33 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKER   33 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc
Confidence            489999999999999999976443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.58  E-value=2.4e-05  Score=55.57  Aligned_cols=27  Identities=37%  Similarity=0.525  Sum_probs=22.8

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCC
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ..++|+++|++|+|||||+++|.+.++
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~   30 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKV   30 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence            345799999999999999999976543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.56  E-value=2.2e-05  Score=54.35  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=23.5

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .|++..++|+|++|+||||+.+.|+.
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            47888999999999999999999964

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.55  E-value=1.8e-05  Score=55.79  Aligned_cols=21  Identities=33%  Similarity=0.465  Sum_probs=19.0

Q ss_pred             CEEEEEeecCCchhHHHHHHH
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +|++|+|++|||||||+..|.
T Consensus         2 kii~I~G~~gSGKTTli~~l~   22 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWV   22 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            589999999999999998775

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=2.3e-05  Score=56.19  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=21.3

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      |.+++|+||+|+|||||.+.|+.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            67899999999999999999975

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=2.8e-05  Score=53.81  Aligned_cols=25  Identities=16%  Similarity=0.348  Sum_probs=22.5

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++++.++|++||||||+.+.|.+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999964

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.46  E-value=3.3e-05  Score=53.40  Aligned_cols=24  Identities=29%  Similarity=0.530  Sum_probs=21.7

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .|.++.|.|++||||||+.+.|.+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999954

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.44  E-value=5e-05  Score=53.36  Aligned_cols=23  Identities=35%  Similarity=0.557  Sum_probs=19.4

Q ss_pred             EEEEEeecCCchhHHHHHHHhcC
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      .|+++|+.++|||||+++|.+..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999996543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.44  E-value=2.6e-05  Score=53.47  Aligned_cols=25  Identities=28%  Similarity=0.402  Sum_probs=22.2

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...+.++|+|+.|+|||||.+.|+.
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999975

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=5e-05  Score=54.94  Aligned_cols=41  Identities=24%  Similarity=0.274  Sum_probs=28.5

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEE
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVG  129 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V  129 (139)
                      +.|+|+|+.++|||||+++|.+..+.... -.++++++.+++
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~   41 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKV   41 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEE
Confidence            35899999999999999999875544332 233445555443

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.43  E-value=4.3e-05  Score=54.76  Aligned_cols=21  Identities=52%  Similarity=0.831  Sum_probs=19.4

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++|+||.+||||||+++|.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999999965

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.42  E-value=2.2e-05  Score=55.85  Aligned_cols=26  Identities=27%  Similarity=0.377  Sum_probs=21.8

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCCc
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      +-|+|+|+.++|||||+++|.+.++.
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~   27 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPK   27 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCE
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCc
Confidence            34899999999999999999765543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=2.8e-06  Score=58.65  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             CCEEEEEeecCCchhHHHHHHH
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +++++|+|+||+||||||++|.
T Consensus        24 ~~~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          24 ELVTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHHHSCCSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999996

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=2.2e-05  Score=59.13  Aligned_cols=24  Identities=38%  Similarity=0.491  Sum_probs=21.9

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.||+.|.|..|+||||||+.|..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHh
Confidence            569999999999999999999865

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.41  E-value=2.9e-05  Score=58.95  Aligned_cols=19  Identities=42%  Similarity=0.630  Sum_probs=17.8

Q ss_pred             EEEEeecCCchhHHHHHHH
Q psy4669          90 VTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~  108 (139)
                      ++++||+|||||||+++|.
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            7889999999999999995

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=4.9e-05  Score=58.57  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=21.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ++..++++|+||.|||||+|+|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHS
T ss_pred             cCCeEEEECCCCCCHHHHHHhhc
Confidence            68899999999999999999994

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=3.4e-05  Score=53.57  Aligned_cols=26  Identities=31%  Similarity=0.437  Sum_probs=22.4

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      .+.+-|+++|+.++|||||+++|.+.
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35677999999999999999999553

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.39  E-value=3.9e-05  Score=60.10  Aligned_cols=21  Identities=43%  Similarity=0.678  Sum_probs=19.4

Q ss_pred             CEEEEEeecCCchhHHHHHHH
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +.++|+||+|||||||.++|.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHH
Confidence            578999999999999999985

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.38  E-value=3e-05  Score=61.18  Aligned_cols=26  Identities=35%  Similarity=0.488  Sum_probs=22.5

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+.+.++|+||+|||||||..+|.-
T Consensus         3 ~~~iRni~i~gh~~~GKTtL~e~ll~   28 (276)
T d2bv3a2           3 LKRLRNIGIAAHIDAGKTTTTERILY   28 (276)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             hhhceEEEEEeCCCCCHHHHHHHHHH
Confidence            35667899999999999999999963

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.37  E-value=3.9e-05  Score=52.74  Aligned_cols=23  Identities=35%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -|.++|+|++||||||+-+.|+.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36788999999999999999964

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.35  E-value=5e-05  Score=52.34  Aligned_cols=23  Identities=26%  Similarity=0.221  Sum_probs=20.6

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++|++|.|+.|+||||+.+.|..
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999998853

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00015  Score=50.90  Aligned_cols=42  Identities=14%  Similarity=0.126  Sum_probs=29.3

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL  131 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~  131 (139)
                      ++++|..|+|||||++.+.+..+.....-.++..+...++..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~   49 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI   49 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEE
Confidence            789999999999999999765554444444444444444443

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.34  E-value=4.2e-05  Score=57.97  Aligned_cols=21  Identities=29%  Similarity=0.637  Sum_probs=19.6

Q ss_pred             CEEEEEeecCCchhHHHHHHH
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ++++|+|+|||||||+|++|+
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            599999999999999999994

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=4.5e-05  Score=52.25  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=19.7

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+.|+|+.|+|||||++.+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            5689999999999999999864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.33  E-value=6.1e-05  Score=53.93  Aligned_cols=26  Identities=27%  Similarity=0.402  Sum_probs=23.0

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+|+++.|+||.||||||+-+.|+.
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999999998854

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.32  E-value=6.5e-05  Score=51.52  Aligned_cols=24  Identities=17%  Similarity=0.390  Sum_probs=21.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+++.|.|++|+||||+-+.|..
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999999975

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=5.1e-05  Score=58.12  Aligned_cols=20  Identities=45%  Similarity=0.665  Sum_probs=18.3

Q ss_pred             EEEEEeecCCchhHHHHHHH
Q psy4669          89 VVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~  108 (139)
                      .++++||+|||||||+..|.
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            68999999999999998884

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=0.00011  Score=51.29  Aligned_cols=43  Identities=16%  Similarity=0.104  Sum_probs=27.7

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEee
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFLY  132 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~~  132 (139)
                      ++++|..|+|||||++.+.+........-.++..+....+.+.
T Consensus         5 i~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~   47 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN   47 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESS
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEEC
Confidence            6799999999999999997755555555556556666555543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.29  E-value=5.5e-05  Score=51.50  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=20.0

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++.|+|++|+||||+.+.|+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999964

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.27  E-value=8.1e-05  Score=52.13  Aligned_cols=23  Identities=39%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +-|++|.|++|||||||-+.|..
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999863

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=4e-05  Score=62.07  Aligned_cols=24  Identities=42%  Similarity=0.688  Sum_probs=21.4

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .+.+.++|+||+|||||||+++|.
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHH
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHH
Confidence            456779999999999999999996

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=7.9e-05  Score=53.49  Aligned_cols=27  Identities=22%  Similarity=0.282  Sum_probs=23.6

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++.||++|+||.||||||+-+.|..
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999999964

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=6.2e-05  Score=58.56  Aligned_cols=27  Identities=22%  Similarity=0.445  Sum_probs=23.1

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ..+..+.+++|+|++|+||||+|++|.
T Consensus        20 i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          20 VGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            345557799999999999999999984

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.23  E-value=4.5e-05  Score=59.00  Aligned_cols=24  Identities=21%  Similarity=0.427  Sum_probs=21.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++..++++|+||.|||||+|+|.+
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             ccceEEEECCCCccHHHHHHhhcc
Confidence            578899999999999999999943

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.23  E-value=8.1e-05  Score=50.93  Aligned_cols=26  Identities=15%  Similarity=0.286  Sum_probs=22.5

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+|-++.++|++||||||+-+.|+.
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999988863

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.22  E-value=8.4e-05  Score=52.54  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=25.8

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCc--ccccccEEEEeeE
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVV--KSEFGGITQHIGA  126 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~--~~e~G~Itq~i~a  126 (139)
                      -|+|+|+.++|||||+++|.+.+..  ....+...++++.
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~   42 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV   42 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeece
Confidence            3899999999999999999654432  2223344444443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00027  Score=49.86  Aligned_cols=41  Identities=17%  Similarity=0.139  Sum_probs=28.6

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEE
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGF  130 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~  130 (139)
                      ++++|..|+|||||++++.+..........++..+....+.
T Consensus        10 i~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~   50 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIS   50 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEE
Confidence            78999999999999999977555444444444444444443

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.00014  Score=52.38  Aligned_cols=29  Identities=31%  Similarity=0.469  Sum_probs=24.9

Q ss_pred             CCccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          80 PSVLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        80 ~~~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .....+++.++.++|+.|||||||.+.+.
T Consensus         7 ~~~~~~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2           7 SSLLSPNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SCSSCSSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             cccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            34556889999999999999999998883

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.17  E-value=8.3e-05  Score=50.58  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=18.8

Q ss_pred             CEEEEEeecCCchhHHHHHHH
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .++.+.|++|+|||||.+.|.
T Consensus         3 klIii~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFI   23 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            478899999999999999874

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.0002  Score=49.14  Aligned_cols=23  Identities=35%  Similarity=0.595  Sum_probs=20.2

Q ss_pred             EEEEeecCCchhHHHHHHHhcCC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ++++|+.++|||||+++|.+.++
T Consensus         4 I~lvG~~nvGKSsLin~l~~~~~   26 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGREA   26 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCc
Confidence            78999999999999999976543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=6.7e-05  Score=52.98  Aligned_cols=42  Identities=17%  Similarity=0.124  Sum_probs=17.8

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEEEe
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVGFL  131 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V~~  131 (139)
                      ++++|+.|+|||||++.+.+..+.......+++++...++..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~   50 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL   50 (173)
T ss_dssp             EEEECCCCC----------------CHHHHHCEEEEEEEEEE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEE
Confidence            789999999999999988654444444445555666655554

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00012  Score=54.54  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=21.7

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +|.+++|+||||+|||||.+.|+.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999999974

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.00021  Score=58.19  Aligned_cols=40  Identities=23%  Similarity=0.396  Sum_probs=28.0

Q ss_pred             EEEEEeecCCchhHHHHHHHhcC-----CcccccccEEEEeeEEE
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTS-----VVKSEFGGITQHIGAFV  128 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~-----v~~~e~G~Itq~i~ay~  128 (139)
                      -++|+|.+|+|||||+|+|+|.+     .+.....+.|+++-.|.
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~  102 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK  102 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee
Confidence            49999999999999999998743     34444456777776665

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.04  E-value=0.00011  Score=52.40  Aligned_cols=26  Identities=35%  Similarity=0.523  Sum_probs=22.9

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -.++-+++|-|..|+||||+++.|++
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            45667999999999999999999965

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00035  Score=48.69  Aligned_cols=39  Identities=21%  Similarity=0.309  Sum_probs=25.9

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEE
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFV  128 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~  128 (139)
                      ++++|..|+|||||++.+.+..........++..+....
T Consensus         7 ivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~   45 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI   45 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEE
Confidence            789999999999999998764444433333333333333

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.02  E-value=0.00049  Score=48.11  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.0

Q ss_pred             EEEEeecCCchhHHHHHHHhcCC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ++++|+.|+|||||++.+.+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~~~   30 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADDSF   30 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCcCHHHHHHHHHcCCC
Confidence            78999999999999999976443

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.01  E-value=0.00017  Score=51.48  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.1

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .|..++|+||.||||||+-+.|+.
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            466789999999999999999864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.00  E-value=0.00016  Score=52.48  Aligned_cols=20  Identities=40%  Similarity=0.542  Sum_probs=18.0

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++|+||+|+|||||.+.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56999999999999999864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.00  E-value=0.00022  Score=48.35  Aligned_cols=24  Identities=42%  Similarity=0.522  Sum_probs=20.6

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      ++++|..|+|||||++++.+..+.
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~~~   31 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGEVV   31 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCc
Confidence            789999999999999999764433

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=7.8e-05  Score=51.27  Aligned_cols=22  Identities=41%  Similarity=0.646  Sum_probs=19.8

Q ss_pred             EEEEeecCCchhHHHHHHHhcC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++++|+.++|||||+++|.+..
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999997644

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00017  Score=48.20  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=18.5

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.++|++|+||||+-+.|+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            577889999999999999964

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00052  Score=48.47  Aligned_cols=40  Identities=15%  Similarity=0.096  Sum_probs=25.9

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcccccccEEEEeeEEEE
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVKSEFGGITQHIGAFVG  129 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~~e~G~Itq~i~ay~V  129 (139)
                      ++++|+.|+|||||++.+.+...........+..+..+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i   47 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRV   47 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEE
T ss_pred             EEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEE
Confidence            7899999999999999996544433333333333333333

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00022  Score=50.91  Aligned_cols=23  Identities=39%  Similarity=0.575  Sum_probs=20.9

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .||++|.||.||||||+=+.|..
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999888864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00023  Score=51.60  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=19.7

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++|+||||+|||||++.|..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999999864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.94  E-value=0.0002  Score=48.37  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.2

Q ss_pred             EEEEeecCCchhHHHHHHHhcC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++++|+.|+|||||++.+.+..
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999997533

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.0002  Score=51.88  Aligned_cols=23  Identities=17%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      |=|++|.|++|||||||-+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            44788999999999999998854

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.00022  Score=51.38  Aligned_cols=20  Identities=40%  Similarity=0.549  Sum_probs=18.3

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++|+||+|+|||||++.|..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999964

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00013  Score=51.24  Aligned_cols=24  Identities=33%  Similarity=0.314  Sum_probs=21.7

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +|-++.++|++||||||+-+.|+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999999964

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00023  Score=50.59  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      |++++|+||.||||||.-+.|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999988854

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.0003  Score=47.07  Aligned_cols=24  Identities=38%  Similarity=0.588  Sum_probs=20.6

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      ++++|+.++|||||+++|.+..+.
T Consensus         3 I~liG~~nvGKSSLln~l~~~~~~   26 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKNDRLA   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCC
Confidence            679999999999999999875443

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.87  E-value=0.00033  Score=49.85  Aligned_cols=26  Identities=31%  Similarity=0.567  Sum_probs=21.9

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcC
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      .+-|++|.|.+||||||+.+.|...|
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            35578899999999999999996544

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.84  E-value=0.00033  Score=48.12  Aligned_cols=25  Identities=32%  Similarity=0.531  Sum_probs=20.8

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      +..-++++|..|+|||||+++|.+.
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3345789999999999999999653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.84  E-value=0.00043  Score=47.80  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=18.9

Q ss_pred             EEEEeecCCchhHHHHHHHhc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ++++|+.|+|||||++.|.+.
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            789999999999999999653

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.82  E-value=0.00033  Score=50.23  Aligned_cols=27  Identities=19%  Similarity=0.381  Sum_probs=23.8

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...+++++.|+||.||||||+-+.|..
T Consensus         4 ~~~~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           4 KLKKSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             HHHTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999999999964

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00046  Score=47.32  Aligned_cols=28  Identities=21%  Similarity=0.310  Sum_probs=24.6

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      --++++.++.|.|+.|+|||||.-.+..
T Consensus        18 GGi~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          18 GGIETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            3579999999999999999999877754

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.78  E-value=0.00029  Score=49.37  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=18.9

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      |.++++|++|+||||+-+.|+.
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5577889999999999999864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0013  Score=45.82  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      ++++|+.|+|||||++.+.+....
T Consensus         8 I~lvG~~~vGKTsll~~~~~~~~~   31 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEKKFK   31 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSSCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCC
Confidence            789999999999999998654433

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.77  E-value=0.00049  Score=52.38  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=26.5

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCCccccccc
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGG  119 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~  119 (139)
                      |-++|+|+..+|||||+++|.+..+.+...|.
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~   58 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI   58 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCc
Confidence            34789999999999999999887776666654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.76  E-value=0.00021  Score=56.73  Aligned_cols=24  Identities=25%  Similarity=0.588  Sum_probs=18.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .+.||++|.|++||||||+-+.|.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHH
Confidence            467899999999999999998874

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.73  E-value=0.00039  Score=47.93  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++.|.|+.|+||||+.+.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999963

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.0008  Score=48.18  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             EEEEeecCCchhHHHHHHHhcC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++|+|..|+|||||++.+.+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~~~   30 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDDT   30 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHhhCC
Confidence            7899999999999999987644

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.71  E-value=0.001  Score=46.09  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=19.9

Q ss_pred             EEEEeecCCchhHHHHHHHhcCC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ++++|+.++|||||++.+.+..+
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~~~   27 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASGQF   27 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCCC
Confidence            67899999999999999976443

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.67  E-value=0.0012  Score=45.75  Aligned_cols=21  Identities=38%  Similarity=0.575  Sum_probs=18.9

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -++++|+.++|||||++.+.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999999944

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.0013  Score=45.67  Aligned_cols=24  Identities=13%  Similarity=0.383  Sum_probs=19.9

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      ++++|..|+|||||++.+.+..+.
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~~f~   29 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSNDFA   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCC
Confidence            678999999999999998764433

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0013  Score=45.22  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.3

Q ss_pred             EEEEeecCCchhHHHHHHHhcC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++++|..|+|||||++.+.+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~~   24 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYDS   24 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999999997543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.59  E-value=0.00063  Score=49.16  Aligned_cols=24  Identities=21%  Similarity=0.443  Sum_probs=21.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ..++++.|.|+.|+|||||++.+.
T Consensus        27 ~~~~~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          27 LRAPITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             TCSSEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCEEEEEcCCCCcHHHHHHHHH
Confidence            356789999999999999999874

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.56  E-value=0.00083  Score=51.40  Aligned_cols=34  Identities=21%  Similarity=0.468  Sum_probs=24.6

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcCCcccccccEE
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTSVVKSEFGGIT  121 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~v~~~e~G~It  121 (139)
                      |-++|+|...+|||||+++|.|..+.+...+.-|
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T   58 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVT   58 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCCCC------
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccc
Confidence            5688999999999999999988777666665433

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.56  E-value=0.0006  Score=47.10  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=20.5

Q ss_pred             CEEEEEeecCCchhHHHHHHHhcC
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      --++++|..|+|||||+++|.+..
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            347899999999999999997643

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.55  E-value=0.00063  Score=49.82  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=20.8

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+..+.+.||.|||||||.++|++
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999999965

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.52  E-value=0.00071  Score=49.28  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=20.5

Q ss_pred             EEEEEeecCCchhHHHHHHHhcC
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      +++|+|.+||||||+.+.+...|
T Consensus         4 iIgITG~igSGKStv~~~l~~~G   26 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTDLG   26 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
Confidence            78999999999999999997544

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0018  Score=44.96  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=20.1

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      +.++|..|+|||||++.+.+....
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~f~   32 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKGQFH   32 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCC
Confidence            678999999999999999764433

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0013  Score=45.52  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=19.7

Q ss_pred             EEEEEeecCCchhHHHHHHHhcC
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      -++++|..|+|||||++.+.+..
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~~   28 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEGQ   28 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            48899999999999999986533

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.47  E-value=0.0022  Score=44.42  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      ++++|..|+|||||++.+.+....
T Consensus         7 i~lvG~~~vGKTsli~rl~~~~f~   30 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVEDSFD   30 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCC
Confidence            679999999999999999764443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.46  E-value=0.0012  Score=50.08  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=22.1

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      .+.++|..|+|||||+|+|.+..++.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~~~~   59 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGERVVS   59 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSCCSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCcee
Confidence            48899999999999999998755443

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0032  Score=43.52  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=19.0

Q ss_pred             EEEEeecCCchhHHHHHHHhc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ++++|..|+|||||++.+.+.
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0018  Score=45.38  Aligned_cols=21  Identities=29%  Similarity=0.564  Sum_probs=18.9

Q ss_pred             EEEEeecCCchhHHHHHHHhc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ++++|..|+|||||++.+.+-
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.001  Score=48.65  Aligned_cols=24  Identities=21%  Similarity=0.563  Sum_probs=21.4

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCC
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      +++|+|..||||||..+.+...|.
T Consensus         5 iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEECCCcCCHHHHHHHHHHCCC
Confidence            899999999999999999976553

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0028  Score=45.05  Aligned_cols=23  Identities=22%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             EEEEeecCCchhHHHHHHHhcCC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ++++|+.|+|||||++.+.+...
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~~f   30 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTGSY   30 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCCC
Confidence            68999999999999998876544

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.00091  Score=53.31  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .+..+++|.|+.|+|||||++.|.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHH
Confidence            568999999999999999999985

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.32  E-value=0.0024  Score=44.89  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=19.3

Q ss_pred             EEEEeecCCchhHHHHHHHhcC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++++|..|+|||||++.+.+-.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~~   26 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNKK   26 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999999987543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.32  E-value=0.00098  Score=46.95  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=19.5

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      |-++.++|..|+|||||-+.|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34688889999999999998863

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.31  E-value=0.00094  Score=46.84  Aligned_cols=21  Identities=24%  Similarity=0.267  Sum_probs=17.9

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.++|++|+||||+-+.|+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            356889999999999999864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.0012  Score=48.28  Aligned_cols=27  Identities=19%  Similarity=0.047  Sum_probs=22.9

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .....+.+.+-||.|+||||+.++|++
T Consensus        48 ~~~~~~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          48 GSGVFRAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             STTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            345567899999999999999999965

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.0017  Score=46.12  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=23.6

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      -++++.++.|.|+.|+|||||.-.+.
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            48999999999999999999987774

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0021  Score=44.94  Aligned_cols=24  Identities=29%  Similarity=0.302  Sum_probs=19.9

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVV  113 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~  113 (139)
                      +.++|..|+|||||++.+.+..+.
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~~f~   28 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKDQFP   28 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCC
Confidence            578999999999999998764433

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.29  E-value=0.0013  Score=46.60  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=21.3

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      |++.-++++||.||||||+-+.|+.
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            4666778999999999999999863

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.0019  Score=44.58  Aligned_cols=20  Identities=15%  Similarity=0.438  Sum_probs=18.2

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|..|+|||||++.+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999998865

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.00062  Score=49.30  Aligned_cols=24  Identities=29%  Similarity=0.595  Sum_probs=21.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      |.++++|=|+.||||||+++.|.+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999965

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.25  E-value=0.0011  Score=46.52  Aligned_cols=20  Identities=30%  Similarity=0.595  Sum_probs=18.0

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++|++|+||||+-+.|++
T Consensus         3 I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999999964

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.24  E-value=0.0023  Score=43.90  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=18.8

Q ss_pred             EEEEeecCCchhHHHHHHHhc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ++++|..|+|||||++.+...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.0016  Score=45.24  Aligned_cols=20  Identities=40%  Similarity=0.606  Sum_probs=18.5

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|+.|+|||||++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999999865

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.21  E-value=0.0014  Score=46.97  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .-+++|.||+||||||.-+.|+.
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34788999999999999998864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.18  E-value=0.0015  Score=47.55  Aligned_cols=24  Identities=29%  Similarity=0.256  Sum_probs=20.8

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.|.+.+.||.|+|||||.++|++
T Consensus        44 ~~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          44 SMPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            446689999999999999999964

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0019  Score=45.15  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=18.6

Q ss_pred             EEEEeecCCchhHHHHHHHhc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ++++|..|+|||||++.+.+.
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999998653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0026  Score=44.02  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=19.1

Q ss_pred             EEEEeecCCchhHHHHHHHhcC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++++|..|+|||||++.+.+..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~~   27 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCENK   27 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999999987533

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0041  Score=42.88  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.3

Q ss_pred             EEEEeecCCchhHHHHHHHhcC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++++|..|+|||||++.+.+-.
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999997643

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.12  E-value=0.0012  Score=52.33  Aligned_cols=25  Identities=36%  Similarity=0.407  Sum_probs=22.4

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+..+++|+|+.|+|||||++.|..
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHH
Confidence            4678999999999999999999863

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0019  Score=46.62  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=21.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ||.+++|=|.-||||||+.+.|..
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999999998864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0015  Score=47.24  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.0

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .|.+.+.||.|+|||||.+++.+
T Consensus        33 ~~~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          33 LPHMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChHHHHHHHHH
Confidence            45588999999999999999964

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0039  Score=43.33  Aligned_cols=20  Identities=25%  Similarity=0.506  Sum_probs=18.3

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|..++|||||++.+.+
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0014  Score=45.57  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=18.9

Q ss_pred             EEEEeecCCchhHHHHHHHhc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~  110 (139)
                      +.++|..|+|||||++.+.+.
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.07  E-value=0.0015  Score=45.44  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=18.5

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++|+|+.||||||+-+.|+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999998864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.06  E-value=0.0014  Score=51.99  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+.|.|+.|+||||||++|.+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCEEEEeeccccchHHHHHHhh
Confidence            4589999999999999999953

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0041  Score=43.05  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=19.4

Q ss_pred             EEEEeecCCchhHHHHHHHhcC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++++|+.++|||||++.+.+..
T Consensus         9 i~vvG~~~vGKTsli~~~~~~~   30 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDGA   30 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            8899999999999999886643

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0023  Score=44.26  Aligned_cols=20  Identities=25%  Similarity=0.410  Sum_probs=18.1

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|..|+|||||++.+.+
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67999999999999998865

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.00  E-value=0.0022  Score=46.26  Aligned_cols=25  Identities=32%  Similarity=0.470  Sum_probs=21.7

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++.+.|.||.|+||||++++|..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999954

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.98  E-value=0.0017  Score=47.26  Aligned_cols=23  Identities=30%  Similarity=0.315  Sum_probs=20.0

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .|-+.+.||.|+|||||.++|.+
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHh
Confidence            34688999999999999999964

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.96  E-value=0.0017  Score=45.54  Aligned_cols=21  Identities=38%  Similarity=0.461  Sum_probs=18.5

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -++++|..|+|||||++.+..
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            377999999999999999853

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0068  Score=42.88  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=20.4

Q ss_pred             EEEEeecCCchhHHHHHHHhcCCcc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSVVK  114 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v~~  114 (139)
                      ++++|..|+|||||++.+..-.+..
T Consensus         6 vvllG~~~vGKTSli~r~~~~~f~~   30 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNKFPS   30 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCS
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCC
Confidence            6789999999999999987644333

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.91  E-value=0.0038  Score=43.14  Aligned_cols=20  Identities=20%  Similarity=0.546  Sum_probs=18.0

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++|..|+|||||++.+..
T Consensus         5 ivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            68999999999999999854

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0038  Score=44.66  Aligned_cols=28  Identities=25%  Similarity=0.248  Sum_probs=24.5

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      --++++.++.|.|++|+|||+|.-.+..
T Consensus        32 GGip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          32 GGIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999999777654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0052  Score=42.62  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=18.7

Q ss_pred             EEEEeecCCchhHHHHHHHhc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ++++|..|+|||||++.+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            678999999999999999653

>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: GalR/LacI-like bacterial regulator
domain: Fructose repressor (FruR), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.0072  Score=37.06  Aligned_cols=50  Identities=12%  Similarity=0.178  Sum_probs=38.3

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYM   55 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~   55 (139)
                      ||++|+|+..|++++-|=+.|=..+....+.+.+     .+-+...|+++||.+.
T Consensus         1 vTl~diA~~agvS~sTVSrvLn~~~~~~~vs~~t-----r~rV~~~a~~lgY~pn   50 (59)
T d1uxda_           1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKT-----VEKVMAVVREHNYHPN   50 (59)
T ss_dssp             CCHHHHHHHHTSCTTHHHHHHHTCGGGTTCTTTT-----HHHHHHHHHHHTCCCC
T ss_pred             CCHHHHHHHHCcCHHHHHHHHcCCCCcCcCCHHH-----HHHHHHHHHHHCCCcC
Confidence            7999999999999999999996554211244443     3578889999999754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0045  Score=42.76  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=19.8

Q ss_pred             EEEEeecCCchhHHHHHHHhcCC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ++++|..|+|||||++.+.....
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~f   28 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQGIF   28 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCCC
Confidence            68999999999999999876443

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.80  E-value=0.0023  Score=44.89  Aligned_cols=21  Identities=29%  Similarity=0.297  Sum_probs=18.7

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++|+|+.||||||+-+.|..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0052  Score=43.11  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=19.9

Q ss_pred             EEEEEeecCCchhHHHHHHHhcC
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      -++++|..|+|||||++.+.+..
T Consensus         7 KivviG~~~vGKTsli~~~~~~~   29 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTNA   29 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            37899999999999999987644

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0024  Score=44.65  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=19.2

Q ss_pred             EEEEeecCCchhHHHHHHHhcC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      ++++|..|+|||||++.+....
T Consensus         9 v~lvG~~~vGKTsLi~r~~~~~   30 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQSY   30 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999987533

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.78  E-value=0.0038  Score=44.91  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -++++.++.|.|+.|+|||||.--+..
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999999765543

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0028  Score=44.32  Aligned_cols=21  Identities=19%  Similarity=0.248  Sum_probs=18.2

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++|+.||||||.-+.|..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999888864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.73  E-value=0.0027  Score=44.62  Aligned_cols=21  Identities=29%  Similarity=0.395  Sum_probs=18.7

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++|+|+.||||||+-+.|+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998875

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0018  Score=45.31  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=17.5

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|..|+|||||++.+..
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68899999999999998844

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.71  E-value=0.0025  Score=44.37  Aligned_cols=19  Identities=37%  Similarity=0.586  Sum_probs=17.5

Q ss_pred             EEEEeecCCchhHHHHHHH
Q psy4669          90 VTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~  108 (139)
                      +.++|..++|||||++.+.
T Consensus        15 IvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6799999999999999994

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.71  E-value=0.0028  Score=44.98  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=18.7

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++|-|..|+||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998863

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.003  Score=45.94  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=21.0

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      |.+++|=|..|+||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            56899999999999999999975

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.68  E-value=0.0041  Score=46.81  Aligned_cols=28  Identities=32%  Similarity=0.373  Sum_probs=22.3

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ....++-|+.++||.|+||||.+-.|+.
T Consensus         6 ~~~~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           6 VPPEPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3345666899999999999999887753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0029  Score=50.11  Aligned_cols=24  Identities=33%  Similarity=0.553  Sum_probs=21.1

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +++-+++|.|++|+|||||-+.|.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHH
Confidence            566789999999999999988884

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0028  Score=44.10  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=18.8

Q ss_pred             EEEEeecCCchhHHHHHHHhc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ++++|..|+|||||++.+...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999998763

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.58  E-value=0.0033  Score=45.83  Aligned_cols=23  Identities=26%  Similarity=0.341  Sum_probs=20.0

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .|-+.+-||.|+|||||.+++++
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999999975

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.56  E-value=0.0037  Score=44.17  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=23.5

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      -++++.++.|.|+.|+|||+|.--+.
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            48999999999999999999977775

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.55  E-value=0.0032  Score=46.43  Aligned_cols=27  Identities=26%  Similarity=0.282  Sum_probs=23.7

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ..-.++-++-++|.+|+|||||-+.|.
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            455788899999999999999998885

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.55  E-value=0.015  Score=41.89  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=22.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +++-++.+-|+.|+|||||.+.+.+
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHh
Confidence            4567899999999999999999875

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.54  E-value=0.0039  Score=46.35  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=22.6

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +.++.++.|.|++|+|||||+..|.
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            6789999999999999999987773

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.0043  Score=45.53  Aligned_cols=24  Identities=33%  Similarity=0.357  Sum_probs=22.0

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ||.+++|=|.-||||||+.+.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            789999999999999999998864

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0043  Score=46.71  Aligned_cols=27  Identities=37%  Similarity=0.411  Sum_probs=22.5

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ..-.++.|+.++||.|+||||.+-.|+
T Consensus         4 ~~~~~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           4 VEGKAPFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             CCSCTTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            344567799999999999999988885

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.53  E-value=0.0067  Score=42.30  Aligned_cols=19  Identities=32%  Similarity=0.705  Sum_probs=17.6

Q ss_pred             EEEEeecCCchhHHHHHHH
Q psy4669          90 VTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~  108 (139)
                      +.++|..|+|||||++.+.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6799999999999999995

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0042  Score=45.56  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=21.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .||.+++|-|+-|+||||+.+.|..
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999998887753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.52  E-value=0.0034  Score=44.22  Aligned_cols=21  Identities=24%  Similarity=0.359  Sum_probs=18.4

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++++|+.||||||+-+.|+.
T Consensus         4 rIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.51  E-value=0.0096  Score=41.89  Aligned_cols=23  Identities=26%  Similarity=0.538  Sum_probs=19.3

Q ss_pred             EEEEeecCCchhHHHHHHHhcCC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      ++++|..|+|||||++.+....+
T Consensus         5 ivliG~~~vGKTsli~r~~~~~f   27 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKDCF   27 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            57899999999999998876443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.50  E-value=0.0042  Score=46.51  Aligned_cols=24  Identities=33%  Similarity=0.409  Sum_probs=21.4

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +++.|+.++||.|+||||.+-.|+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            578899999999999999987775

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0033  Score=43.99  Aligned_cols=20  Identities=30%  Similarity=0.539  Sum_probs=18.3

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|..|+|||||++.+.+
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999999965

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.38  E-value=0.0055  Score=42.64  Aligned_cols=21  Identities=19%  Similarity=0.298  Sum_probs=18.3

Q ss_pred             EEEEeecCCchhHHHHHHHhc
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~  110 (139)
                      ++++|..|+|||||++.+.+.
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            578899999999999998753

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.0047  Score=46.67  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=21.4

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +..+++.|.|||.+||||+|+.+.
T Consensus        39 ~~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          39 PQRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCceEEEEeccCchhhHHHHHHHH
Confidence            346899999999999999999986

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.32  E-value=0.0043  Score=48.12  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++..+.+.||.|||||.|-++|++
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            345677899999999999999975

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0048  Score=43.56  Aligned_cols=20  Identities=35%  Similarity=0.461  Sum_probs=18.5

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++++|..|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999999865

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.22  E-value=0.0061  Score=43.75  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=21.1

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .|..-++|+||.||||||+-+.|+.
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            3556788999999999999999864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.21  E-value=0.0062  Score=42.84  Aligned_cols=25  Identities=16%  Similarity=0.089  Sum_probs=22.1

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHH
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTL  107 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L  107 (139)
                      -++++.++.|.|++|+|||+|.--+
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHH
Confidence            4899999999999999999996543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.12  E-value=0.0067  Score=45.52  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=17.0

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      +++.|+.++||.|+||||.+-.|+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            467789999999999999988775

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.08  E-value=0.0052  Score=42.75  Aligned_cols=20  Identities=25%  Similarity=0.295  Sum_probs=18.2

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++|..++|||||++.+..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999999865

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.07  E-value=0.0072  Score=45.73  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=20.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHh
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.-+.+.||.|+|||+|.++|.+
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEecCCCCChhHHHHHHHH
Confidence            345689999999999999999964

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.04  E-value=0.0062  Score=44.06  Aligned_cols=22  Identities=36%  Similarity=0.450  Sum_probs=18.9

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      |-+.+-||.|+||||+.+.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            4478999999999999998853

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.0073  Score=46.03  Aligned_cols=26  Identities=31%  Similarity=0.363  Sum_probs=21.6

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...++-+.+.||.|||||+|.++|++
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHH
Confidence            34456788999999999999999975

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.99  E-value=0.0081  Score=43.31  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=24.3

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      --++++.++.|.|+.|+|||+|.-.+..
T Consensus        21 GGi~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          21 GGFFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3478999999999999999999877743

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.99  E-value=0.0066  Score=43.70  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=19.3

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      |.+.+-||.|+||||+.++|.+
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHH
Confidence            4478999999999999999964

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.85  E-value=0.0089  Score=45.03  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++-+.+.||.|+|||+|.++++.
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHH
Confidence            44588999999999999999965

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.81  E-value=0.0062  Score=44.11  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=19.7

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .|.+.+.||.|+||||+.+++..
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999999865

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.75  E-value=0.0071  Score=45.58  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=19.0

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      -+.+.||.|||||+|.++|++
T Consensus        42 ~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhh
Confidence            478899999999999999965

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.69  E-value=0.0083  Score=41.48  Aligned_cols=20  Identities=25%  Similarity=0.591  Sum_probs=18.3

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.++|..|+|||||++.+..
T Consensus         5 iv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            68999999999999999965

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.67  E-value=0.0083  Score=43.64  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=19.7

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+++|.|..||||||..+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999964

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.66  E-value=0.0051  Score=44.45  Aligned_cols=21  Identities=33%  Similarity=0.374  Sum_probs=17.7

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.+.||.|+||||+++++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            455679999999999999864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.63  E-value=0.016  Score=44.29  Aligned_cols=42  Identities=14%  Similarity=0.256  Sum_probs=29.8

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCC---cccccccEEEEeeEE
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSV---VKSEFGGITQHIGAF  127 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v---~~~e~G~Itq~i~ay  127 (139)
                      .+--++|+|...+|||||+++|.++.+   +...+..|.-++|..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v   53 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKV   53 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEE
Confidence            334599999999999999999977643   323345555556653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.56  E-value=0.0081  Score=43.94  Aligned_cols=24  Identities=25%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCC
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSV  112 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v  112 (139)
                      -+.++|..|+|||||++.+.....
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~   31 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHV   31 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCc
Confidence            468999999999999999864333

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.54  E-value=0.0091  Score=46.77  Aligned_cols=23  Identities=17%  Similarity=0.154  Sum_probs=19.3

Q ss_pred             CCCEEEEEeecCCchhHHHHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ++=+++|.|+.|||||||-+.|.
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHH
Confidence            34588999999999999987763

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.53  E-value=0.011  Score=44.87  Aligned_cols=25  Identities=28%  Similarity=0.295  Sum_probs=21.4

Q ss_pred             cCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.+.-+.+-||.|+|||+|.+++++
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHH
Confidence            4456688999999999999999964

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.48  E-value=0.01  Score=44.59  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=19.8

Q ss_pred             CCEEEEEeecCCchhHHHHHHH
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ..++.|.|||.+||||+|+.+.
T Consensus        35 ~~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHH
T ss_pred             CcEEEEECCCccccchhhhhhH
Confidence            3589999999999999999875

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.012  Score=45.51  Aligned_cols=25  Identities=32%  Similarity=0.445  Sum_probs=21.8

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhc
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNT  110 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~  110 (139)
                      +.-||+|+|+-.+||||||+.|.+.
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCC
Confidence            3568999999999999999999763

>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Putative DNA-binding domain
superfamily: Putative DNA-binding domain
family: N-terminal subdomain of bacterial translation initiation factor IF2
domain: N-terminal subdomain of bacterial translation initiation factor IF2
species: Escherichia coli [TaxId: 562]

Probab=94.36  E-value=0.0083  Score=35.81  Aligned_cols=26  Identities=19%  Similarity=0.207  Sum_probs=24.4

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCc
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDN   26 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~   26 (139)
                      |||++||+.+|++++.+++.|-..|.
T Consensus         3 vTVk~lA~~v~~~vd~Ll~Ql~~AGl   28 (49)
T d1nd9a_           3 VTIKTLAAERQTSVERLVQQFADAGI   28 (49)
T ss_dssp             ECTTHHHHHHSSSHHHHHHHHHHHTS
T ss_pred             ccHHHHHHHHCcCHHHHHHHHHHcCC
Confidence            68999999999999999999999984

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=94.31  E-value=0.012  Score=43.80  Aligned_cols=23  Identities=26%  Similarity=0.261  Sum_probs=20.0

Q ss_pred             CCCEEEEEeecCCchhHHHHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ++.|+.++||.|+||||.+-.|+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45688999999999999988885

>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: GalR/LacI-like bacterial regulator
domain: Glucose-resistance amylase regulator CcpA, N-terminal domain
species: Bacillus megaterium [TaxId: 1404]

Probab=94.19  E-value=0.021  Score=34.73  Aligned_cols=47  Identities=17%  Similarity=0.241  Sum_probs=35.7

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYM   55 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~   55 (139)
                      +|++|+|++.|++..-|=+.|-..+   .+.+.+     .+-+...++++||.+.
T Consensus         2 vTi~dvA~~agvS~~TVSr~Ln~~~---~Vs~~t-----r~rV~~aa~~lgY~pn   48 (57)
T d2hsga1           2 VTIYDVAREASVSMATVSRVVNGNP---NVKPST-----RKKVLETIERLGYRPN   48 (57)
T ss_dssp             CCHHHHHHHTTSCHHHHHHHHTTCT---TSCHHH-----HHHHHHHHHHHTCCSC
T ss_pred             cCHHHHHHHHCcCHHHHHHHhCCCC---cCCHHH-----HHHHHHHHHHHCcCCC
Confidence            6999999999999999999995443   133222     2467788999999754

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.06  E-value=0.013  Score=44.71  Aligned_cols=22  Identities=18%  Similarity=0.415  Sum_probs=18.8

Q ss_pred             EEEEeecCCchhHHHHHHHhcC
Q psy4669          90 VTIMGHVDHGKTTLLDTLRNTS  111 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~~~  111 (139)
                      |+|+|...+|||||+++|.+++
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            7999999999999999996643

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.03  E-value=0.012  Score=47.29  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=22.4

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+.-++.+.||.||||||.|.++..
T Consensus       155 ~~~~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         155 KRPHGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             TSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hhhhceEEEEcCCCCCccHHHHHHhh
Confidence            35678899999999999999998854

>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: GalR/LacI-like bacterial regulator
domain: Lac repressor (LacR), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.03  Score=34.24  Aligned_cols=47  Identities=15%  Similarity=0.125  Sum_probs=36.5

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYM   55 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~   55 (139)
                      +|++|+|+..|++++-|=+.|-..+   .+.+.+     .+-+..+|+++||.+.
T Consensus         3 ~Ti~diA~~agvS~sTVSr~l~~~~---~vs~~t-----r~rI~~~a~~lgY~pn   49 (59)
T d1efaa1           3 VTLYDVAEYAGVSYQTVSRVVNQAS---HVSAKT-----REKVEAAMAELNYIPN   49 (59)
T ss_dssp             CCHHHHHHTTTSCHHHHHHHHTTCS---SCCTHH-----HHHHHHHHHHHTCCCC
T ss_pred             CCHHHHHHHHCCCHHHHHHHHCCCC---cCCHHH-----HHHHHHHHHHHCCCcC
Confidence            6899999999999999999995543   244432     3467889999999753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.021  Score=41.82  Aligned_cols=23  Identities=22%  Similarity=0.164  Sum_probs=20.6

Q ss_pred             CCCEEEEEeecCCchhHHHHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ++.++.|.|+.|+|||||+-.|.
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHH
Confidence            48999999999999999987764

>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: GalR/LacI-like bacterial regulator
domain: Purine repressor (PurR), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.74  E-value=0.037  Score=33.54  Aligned_cols=46  Identities=17%  Similarity=0.133  Sum_probs=35.5

Q ss_pred             CHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeee
Q psy4669           2 TLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYM   55 (139)
Q Consensus         2 tv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~   55 (139)
                      |++|+|+..|+++.-|=+.|=..+   .+++.+     .+-+..+++++||.+.
T Consensus         2 Ti~dvA~~agVS~sTVSr~ln~~~---~vs~~t-----r~rV~~~a~~lgY~pn   47 (57)
T d1qpza1           2 TIKDVAKRANVSTTTVSHVINKTR---FVAEET-----RNAVWAAIKELHYSPS   47 (57)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHHTCS---CCCHHH-----HHHHHHHHHHHTCCCC
T ss_pred             CHHHHHHHHCcCHHHHHHHHCCCC---ccCHHH-----HHHHHHHHHHHCCCCC
Confidence            899999999999999999996543   233322     2467788999999754

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.52  E-value=0.024  Score=44.05  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=19.4

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.++||+|+|||.|.+.|+.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            688999999999999999975

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=93.52  E-value=0.017  Score=43.68  Aligned_cols=39  Identities=26%  Similarity=0.434  Sum_probs=28.3

Q ss_pred             EEEEEeecCCchhHHHHHHHhcCC--cccccccEEEEeeEE
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRNTSV--VKSEFGGITQHIGAF  127 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~~~v--~~~e~G~Itq~i~ay  127 (139)
                      -++|+|-.-+|||||+++|.++++  +...+..|.-++|.-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv   44 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVV   44 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEE
T ss_pred             eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEE
Confidence            489999999999999999986554  223466666677763

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.12  E-value=0.028  Score=44.82  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=23.7

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..++.+.+++.||.|+|||+|-++|.+
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHH
Confidence            346778999999999999999999975

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.95  E-value=0.024  Score=46.47  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.7

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +..+.++||+|+|||-|.++|++
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999976

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=92.36  E-value=0.042  Score=40.07  Aligned_cols=27  Identities=22%  Similarity=0.059  Sum_probs=21.6

Q ss_pred             cccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          83 LMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..-.+.-+.|.|++|+|||||.-.|..
T Consensus        10 v~~~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          10 VDIYGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence            344567789999999999999877653

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.04  Score=42.13  Aligned_cols=27  Identities=30%  Similarity=0.215  Sum_probs=22.9

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      --++++.++-|.|++|+|||||.-.+.
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~   75 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVI   75 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCccCceEEEEecCCCcHHHHHHHHHH
Confidence            457899999999999999999965553

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=92.22  E-value=0.04  Score=38.35  Aligned_cols=23  Identities=30%  Similarity=0.316  Sum_probs=18.8

Q ss_pred             CCEEEEEeecCCchhH-HHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTT-LLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTT-LL~~L~~  109 (139)
                      |.+..|+||+-||||| |++.++.
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHH
Confidence            4567899999999999 7777653

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.15  E-value=0.045  Score=39.55  Aligned_cols=28  Identities=21%  Similarity=0.083  Sum_probs=21.7

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ...-.+.-+.|.|++|.|||||.-.|..
T Consensus        10 ~v~~~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          10 LVDVYGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence            3445667789999999999998766543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=92.04  E-value=0.052  Score=39.59  Aligned_cols=26  Identities=23%  Similarity=0.063  Sum_probs=21.0

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .-.+.-+.|.|++|+|||||.-.|..
T Consensus        12 ~~~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          12 EVFGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            34667789999999999999877643

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.01  E-value=0.04  Score=41.59  Aligned_cols=22  Identities=14%  Similarity=0.229  Sum_probs=19.6

Q ss_pred             CCEEEEEeecCCchhHHHHHHH
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ..+++|.|.-|.|||||...+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~   65 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQAL   65 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999998873

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=92.01  E-value=0.031  Score=42.78  Aligned_cols=22  Identities=27%  Similarity=0.373  Sum_probs=19.2

Q ss_pred             CEEEEEeecCCchhHHHHHHHh
Q psy4669          88 PVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        88 pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      --+.+.|+.|+|||||.+++.+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            3578999999999999999964

>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: Antitoxin HigA
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.14  Score=32.53  Aligned_cols=44  Identities=11%  Similarity=0.160  Sum_probs=35.2

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYM   55 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~   55 (139)
                      ||..+||+++|++.+.|-+.+-...          .++ .+++..+|+-||+.+.
T Consensus        15 lsq~~LA~~lGvs~~~is~ie~g~~----------~~s-~~~~~kla~~lgvs~~   58 (87)
T d2icta1          15 VSLREFARAMEIAPSTASRLLTGKA----------ALT-PEMAIKLSVVIGSSPQ   58 (87)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHHTSS----------CCC-HHHHHHHHHHTCSCHH
T ss_pred             CCHHHHHHHHhhcHHHHHHHHHhcc----------CCC-HHHHHHHHHHHCcCHH
Confidence            6889999999999999988885432          244 4589999999999764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.52  E-value=0.059  Score=41.43  Aligned_cols=26  Identities=31%  Similarity=0.267  Sum_probs=22.8

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHH
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTL  107 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L  107 (139)
                      --++++.++-+.||+|+|||||.-.+
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~~   80 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALHA   80 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHHH
T ss_pred             CCcccceeEEEecCCCcHHHHHHHHH
Confidence            46899999999999999999996444

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.29  E-value=0.064  Score=41.10  Aligned_cols=27  Identities=30%  Similarity=0.260  Sum_probs=23.5

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      --++++.++-|.|+.+||||||.-.+.
T Consensus        52 GGip~g~itei~G~~~sGKT~l~l~~~   78 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLALAIV   78 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCccCceEEEEecCCccchHHHHHHHH
Confidence            457999999999999999999976664

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.048  Score=37.61  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=18.5

Q ss_pred             CCCEEEEEeecCCchhHH-HHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTL-LDTLR  108 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTL-L~~L~  108 (139)
                      ||.+..|+||+-+||||- ++.+.
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~   24 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVR   24 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHH
Confidence            678899999999999995 44443

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.25  E-value=0.052  Score=42.29  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=18.3

Q ss_pred             CCEEEEEeecCCchhHHHHHHH
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      .+-+.|+|.+|+|||+++..|.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHH
Confidence            3458999999999999987664

>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: NE1354
domain: HTH-motif protein NE1354
species: Nitrosomonas europaea [TaxId: 915]

Probab=90.72  E-value=0.2  Score=30.27  Aligned_cols=47  Identities=21%  Similarity=0.316  Sum_probs=34.9

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMVI   57 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~~   57 (139)
                      +|.++||+++|++++.|-+..-  |...       ..+ .+.+..+|..||+++.+.
T Consensus        20 ltq~elA~~~gv~~~~is~ie~--g~~~-------~~s-~~~L~~ia~~Lg~~i~~~   66 (69)
T d2a6ca1          20 LTQFKAAELLGVTQPRVSDLMR--GKID-------LFS-LESLIDMITSIGLKVEIN   66 (69)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHT--TCGG-------GCC-HHHHHHHHHHTTCCCCCC
T ss_pred             CCHHHHHHHHHcCHhHHHHHHc--cccc-------chh-HHHHHHHHHHhCCCcEee
Confidence            6889999999999999988763  3211       122 237888999999987653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=90.66  E-value=0.095  Score=39.39  Aligned_cols=39  Identities=31%  Similarity=0.446  Sum_probs=23.2

Q ss_pred             CCCEEEEEeecCCchhHHHHHHHhcCCcc-cccccEEEEe
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDTLRNTSVVK-SEFGGITQHI  124 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~L~~~~v~~-~e~G~Itq~i  124 (139)
                      ++--++|+|....|||||+|+|++...+. +..-|.|-++
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~  150 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ  150 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------
T ss_pred             CceEEEEEecCccchhhhhhhhhccceEEECCcccccccc
Confidence            44458999999999999999998755433 2222445443

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=90.60  E-value=0.068  Score=42.24  Aligned_cols=21  Identities=24%  Similarity=0.281  Sum_probs=18.8

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++|=|..|+||||+++.|..
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999999965

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.50  E-value=0.065  Score=39.18  Aligned_cols=20  Identities=45%  Similarity=0.624  Sum_probs=17.8

Q ss_pred             EEEEeecCCchhHHHHHHHh
Q psy4669          90 VTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        90 v~ImG~~g~GKTTLL~~L~~  109 (139)
                      +.|-|++|+|||-|+.++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            56999999999999999864

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.27  E-value=0.061  Score=42.61  Aligned_cols=21  Identities=38%  Similarity=0.260  Sum_probs=18.6

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .|+|=|..|+||||+++.|..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC
T ss_pred             EEEEECCcCCCHHHHHHHHHH
Confidence            478899999999999999953

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=90.17  E-value=0.076  Score=41.99  Aligned_cols=21  Identities=19%  Similarity=0.181  Sum_probs=18.5

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .+.|=|..|+||||+++.|..
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHS
T ss_pred             EEEEECCccCCHHHHHHHHHH
Confidence            467889999999999999954

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.07  E-value=0.096  Score=40.21  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=21.4

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+...+.++|+.|.|||+++..+..
T Consensus        36 r~~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          36 RRRKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCccCCcEEECCCCCcHHHHHHHHHH
Confidence            44455778999999999999998864

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.11  E-value=0.13  Score=37.47  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=19.1

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +..+.+-||.|+||||+.+++..
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHH
Confidence            34577889999999999998754

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=88.92  E-value=0.11  Score=40.94  Aligned_cols=21  Identities=33%  Similarity=0.570  Sum_probs=17.6

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.+.||.|||||.|-++|++
T Consensus       125 ~~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            344579999999999999964

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=88.82  E-value=0.16  Score=39.51  Aligned_cols=28  Identities=25%  Similarity=0.255  Sum_probs=24.6

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+-+|.-.+|+|+.|+|||||+..|..
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            3578999999999999999999988853

>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Probable transcriptional regulator VC1968, N-terminal domain
domain: Probable transcriptional regulator VC1968, N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=88.64  E-value=0.42  Score=29.13  Aligned_cols=45  Identities=13%  Similarity=0.128  Sum_probs=34.1

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMV   56 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~   56 (139)
                      +|..+||+.+|++...|-++.  .|.   ..+     + .+.+..||+-||+.+.+
T Consensus        22 ~sq~~lA~~~gis~~~i~~~E--~g~---~~p-----~-~~~l~~ia~~l~v~~~~   66 (79)
T d1y9qa1          22 LSLDATAQLTGVSKAMLGQIE--RGE---SSP-----T-IATLWKIASGLEASFSA   66 (79)
T ss_dssp             CCHHHHHHHHSSCHHHHHHHH--TTC---SCC-----C-HHHHHHHHHHHTCCSGG
T ss_pred             CCHHHHHHHHCcchhHHHHHH--cCC---CCC-----C-HHHHHHHHHHHCCCHHH
Confidence            688999999999999988876  331   112     2 34889999999997554

>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: Restriction-modification controller protein C.AhdI
species: Aeromonas hydrophila [TaxId: 644]

Probab=88.36  E-value=0.57  Score=27.91  Aligned_cols=44  Identities=14%  Similarity=0.120  Sum_probs=32.8

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYM   55 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~   55 (139)
                      +|.++||+.+|++..-+-++-  .|.   .+     .+ .+.+..||+.||+.+.
T Consensus        23 ltq~~lA~~~gis~~~i~~~E--~g~---~~-----p~-~~~l~~ia~~l~v~~~   66 (69)
T d1y7ya1          23 LSQETLAFLSGLDRSYVGGVE--RGQ---RN-----VS-LVNILKLATALDIEPR   66 (69)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHH--TTC---SC-----CB-HHHHHHHHHHTTSCGG
T ss_pred             CCHHHHHhHhCCCHHHHHHHH--CCC---CC-----CC-HHHHHHHHHHhCcCHH
Confidence            688999999999999887775  342   11     22 3488899999998653

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=88.23  E-value=0.13  Score=40.76  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=19.6

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +..+.++||+|+|||-|-+.|+.
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            34478899999999999999965

>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: SinR repressor, DNA-binding domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.56  E-value=0.72  Score=27.29  Aligned_cols=46  Identities=15%  Similarity=0.151  Sum_probs=33.6

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMV   56 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~   56 (139)
                      +|..+||+.+|++..-|-++--  |.  ..++     + .+.+..||+.||+.+..
T Consensus        15 ltq~~la~~~gis~~~i~~~E~--g~--~~~p-----s-~~~l~~ia~~l~v~~~~   60 (68)
T d1b0na2          15 YSLSELAEKAGVAKSYLSSIER--NL--QTNP-----S-IQFLEKVSAVLDVSVHT   60 (68)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHT--TC--CSCC-----C-HHHHHHHHHHHTCCHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHc--CC--CCCC-----C-HHHHHHHHHHHCCcHHH
Confidence            6889999999999998877663  31  1222     2 34888999999997654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=87.50  E-value=0.17  Score=39.07  Aligned_cols=21  Identities=33%  Similarity=0.419  Sum_probs=18.7

Q ss_pred             EEEEEeecCCchhHHHHHHHh
Q psy4669          89 VVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        89 vv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ++.+.||+|+|||.|-+.|+.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            577889999999999999864

>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Phage repressors
domain: P22 C2 repressor, DNA-binding domain
species: Salmonella bacteriophage P22 [TaxId: 10754]

Probab=87.48  E-value=0.43  Score=28.16  Aligned_cols=44  Identities=9%  Similarity=0.006  Sum_probs=33.3

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYM   55 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~   55 (139)
                      +|..+||+.+|++.+-+-++.  .|.   ..+     + .+.+..||+.||+.+.
T Consensus        17 ~tq~~lA~~~gvs~~~i~~~e--~g~---~~p-----~-~~~l~~ia~~l~v~~~   60 (66)
T d2r1jl1          17 IRQAALGKMVGVSNVAISQWE--RSE---TEP-----N-GENLLALSKALQCSPD   60 (66)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHH--TTS---SCC-----B-HHHHHHHHHHTTSCHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHH--cCC---CCC-----C-HHHHHHHHHHhCCCHH
Confidence            588999999999998888877  342   112     2 3488999999998754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.42  E-value=0.2  Score=36.89  Aligned_cols=26  Identities=19%  Similarity=0.349  Sum_probs=21.0

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+...+.++|+.|.|||++...|+.
T Consensus        40 r~~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          40 RRTKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccCCCCeEEEecCCcccHHHHHHHHH
Confidence            34445678999999999999988864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.20  E-value=0.2  Score=35.92  Aligned_cols=23  Identities=17%  Similarity=0.196  Sum_probs=20.0

Q ss_pred             CCEEEEEeecCCchhHHHHHHHh
Q psy4669          87 PPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      +..+.+-||.|+||||+.+.+++
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            45689999999999999998865

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=87.10  E-value=0.17  Score=39.97  Aligned_cols=21  Identities=29%  Similarity=0.335  Sum_probs=18.4

Q ss_pred             CCCEEEEEeecCCchhHHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLLDT  106 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~~  106 (139)
                      ..+++.|.|+-|+||||++..
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHH
Confidence            578999999999999998744

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.61  E-value=0.16  Score=35.28  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=19.4

Q ss_pred             cCCCEEEEEeecCCchhHH-HHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTL-LDTLR  108 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTL-L~~L~  108 (139)
                      .+|.+..|+||+-|||||- ++.+.
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~   29 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIR   29 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHHH
Confidence            4678899999999999994 55553

>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: Putative transcription regulator CylR2
species: Enterococcus faecalis [TaxId: 1351]

Probab=86.48  E-value=0.62  Score=27.54  Aligned_cols=44  Identities=14%  Similarity=0.194  Sum_probs=33.1

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYM   55 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~   55 (139)
                      +|.++||+.+|++..-+-++-  .|.   .+     .+ .+.+..||+-||+.+.
T Consensus        15 ~tq~elA~~~gis~~~is~~e--~g~---~~-----p~-~~~l~~ia~~l~v~~~   58 (66)
T d1utxa_          15 ISQSELAALLEVSRQTINGIE--KNK---YN-----PS-LQLALKIAYYLNTPLE   58 (66)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHH--TTS---CC-----CC-HHHHHHHHHHTTSCHH
T ss_pred             CCHHHHHHhcccCHHHHHHHH--cCC---CC-----CC-HHHHHHHHHHHCCCHH
Confidence            688999999999999987766  332   12     22 3488899999998654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=86.02  E-value=0.17  Score=37.45  Aligned_cols=17  Identities=41%  Similarity=0.624  Sum_probs=13.3

Q ss_pred             CCEEEEEeecCCchhHHH
Q psy4669          87 PPVVTIMGHVDHGKTTLL  104 (139)
Q Consensus        87 ~pvv~ImG~~g~GKTTLL  104 (139)
                      +| +.|.|+-|+||||.|
T Consensus        25 g~-~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          25 GP-LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SC-EEEEECTTSCHHHHH
T ss_pred             CC-EEEEecCCccHHHHH
Confidence            45 557799999999754

>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors
family: Sigma4 domain
domain: SigmaF
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.69  E-value=0.32  Score=28.77  Aligned_cols=21  Identities=14%  Similarity=0.328  Sum_probs=19.2

Q ss_pred             CHHHHHHHhCCCHHHHHHHHH
Q psy4669           2 TLKDLAKSMGVDCDHLYEVMM   22 (139)
Q Consensus         2 tv~eLA~~l~~~~~~ii~~L~   22 (139)
                      |+.|||+.|++++.+|...|.
T Consensus        33 T~~EiA~~l~~~~e~V~~~l~   53 (57)
T d1l0oc_          33 TVTEIADHLGISPEDVVLAQE   53 (57)
T ss_dssp             BHHHHHHHHTSCHHHHHHHHH
T ss_pred             CHHHHHHHHCcCHHHHHHHHH
Confidence            789999999999999998874

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.59  E-value=0.21  Score=39.48  Aligned_cols=20  Identities=35%  Similarity=0.408  Sum_probs=17.1

Q ss_pred             CCCEEEEEeecCCchhHHHH
Q psy4669          86 RPPVVTIMGHVDHGKTTLLD  105 (139)
Q Consensus        86 r~pvv~ImG~~g~GKTTLL~  105 (139)
                      .+.+..+.|-||.|||||-.
T Consensus        13 ~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHTC
T ss_pred             CCCEEEEEccCCCCcccccc
Confidence            46788999999999999753

>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: RpiR-like
domain: Putative transcriptional regulator YbbH
species: Bacillus subtilis [TaxId: 1423]

Probab=84.93  E-value=0.44  Score=30.15  Aligned_cols=25  Identities=4%  Similarity=0.052  Sum_probs=23.9

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcC
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVD   25 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g   25 (139)
                      +|++|||+..+++++-|+++...+|
T Consensus        37 ~si~~lA~~~~vS~sTi~Rf~kklG   61 (83)
T d2o3fa1          37 STVNEISALANSSDAAVIRLCKSLG   61 (83)
T ss_dssp             CCHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHCCCHHHHHHHHHHhC
Confidence            6899999999999999999999997

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=84.84  E-value=0.21  Score=36.30  Aligned_cols=15  Identities=20%  Similarity=0.454  Sum_probs=12.6

Q ss_pred             EEEEeecCCchhHHH
Q psy4669          90 VTIMGHVDHGKTTLL  104 (139)
Q Consensus        90 v~ImG~~g~GKTTLL  104 (139)
                      ..|.|+-|+||||.|
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            578899999999753

>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: Regulatory protein C.BclI
species: Bacillus caldolyticus [TaxId: 1394]

Probab=84.70  E-value=0.95  Score=27.26  Aligned_cols=44  Identities=18%  Similarity=0.164  Sum_probs=33.4

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYM   55 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~   55 (139)
                      +|..+||+++|++.+-|-++.  .|.   ..     .+ .+.+..||.-||+.+.
T Consensus        24 ltq~~lA~~~gis~~~i~~~e--~g~---~~-----p~-~~~l~~ia~~l~v~~~   67 (77)
T d2b5aa1          24 VSQEELADLAGLHRTYISEVE--RGD---RN-----IS-LINIHKICAALDIPAS   67 (77)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHH--TTC---SC-----CB-HHHHHHHHHHTTCCHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHH--cCC---CC-----CC-HHHHHHHHHHhCCCHH
Confidence            588999999999999998875  342   11     22 3478899999999754

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=84.58  E-value=0.22  Score=39.29  Aligned_cols=20  Identities=35%  Similarity=0.466  Sum_probs=17.1

Q ss_pred             cCCCEEEEEeecCCchhHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLL  104 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL  104 (139)
                      +.+.+..+.|-||.|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            34678899999999999975

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=84.19  E-value=0.25  Score=32.33  Aligned_cols=22  Identities=18%  Similarity=0.224  Sum_probs=17.6

Q ss_pred             cCCCEEEEEeecCCchhHHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLDT  106 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~~  106 (139)
                      +.-++..|.+|.|+|||+++-.
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~   27 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPA   27 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHH
Confidence            3457788999999999998643

>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Phage repressors
domain: 434 C1 repressor, DNA-binding domain
species: Bacteriophage 434 [TaxId: 10712]

Probab=84.17  E-value=0.58  Score=27.26  Aligned_cols=44  Identities=9%  Similarity=0.153  Sum_probs=32.2

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMV   56 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~   56 (139)
                      ||-.|||+.+|++..-|-++.  .|.  +  +   ..+   .+..||+.||+.+.+
T Consensus        15 ~sq~elA~~~gvs~~~is~~E--~g~--~--~---~~~---~l~~ia~~l~v~~~~   58 (63)
T d1r69a_          15 LNQAELAQKVGTTQQSIEQLE--NGK--T--K---RPR---FLPELASALGVSVDW   58 (63)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHH--TTS--C--S---SCT---THHHHHHHTTCCHHH
T ss_pred             CcHHHHHHHhCcCHHHHHHHH--CCC--C--c---CHH---HHHHHHHHHCcCHHH
Confidence            688999999999999887775  342  1  2   122   567899999987653

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=83.57  E-value=0.22  Score=31.64  Aligned_cols=20  Identities=25%  Similarity=0.296  Sum_probs=17.0

Q ss_pred             cccCCCEEEEEeecCCchhH
Q psy4669          83 LMKRPPVVTIMGHVDHGKTT  102 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTT  102 (139)
                      ...++..+.|..|.|+|||.
T Consensus         3 ~l~~~~~~il~~~tGsGKT~   22 (140)
T d1yksa1           3 MLKKGMTTVLDFHPGAGKTR   22 (140)
T ss_dssp             TTSTTCEEEECCCTTSSTTT
T ss_pred             HHHcCCcEEEEcCCCCChhH
Confidence            35678899999999999994

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.42  E-value=0.4  Score=36.93  Aligned_cols=27  Identities=22%  Similarity=0.278  Sum_probs=23.2

Q ss_pred             ccccCCCEEEEEeecCCchhHHHHHHH
Q psy4669          82 VLMKRPPVVTIMGHVDHGKTTLLDTLR  108 (139)
Q Consensus        82 ~~~~r~pvv~ImG~~g~GKTTLL~~L~  108 (139)
                      ...-+|.-++|+|+.|+|||+|+..+.
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence            357899999999999999999976663

>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Phage repressors
domain: cro 434
species: Bacteriophage 434 [TaxId: 10712]

Probab=83.32  E-value=0.68  Score=27.22  Aligned_cols=44  Identities=18%  Similarity=0.170  Sum_probs=32.5

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYMV   56 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~~   56 (139)
                      +|..+||+++|++..-|-++.  .|.  + .+    .  + .+..||+.||+.+.+
T Consensus        17 ltq~~lA~~~gvs~~ti~~~E--~g~--~-~~----~--~-~l~~ia~~l~v~~~~   60 (65)
T d2croa_          17 MTQTELATKAGVKQQSIQLIE--AGV--T-KR----P--R-FLFEIAMALNCDPVW   60 (65)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHH--TTC--C-SS----C--T-THHHHHHHTTSCHHH
T ss_pred             CCHHHHHHHHCcCHhHHHHHH--CCC--C-CC----H--H-HHHHHHHHhCCCHHH
Confidence            578999999999999998865  442  1 11    1  1 467899999987653

>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: EDF1-like
domain: Endothelial differentiation-related factor 1, EDF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.13  E-value=1.4  Score=26.97  Aligned_cols=44  Identities=23%  Similarity=0.142  Sum_probs=33.0

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhCCeee
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSGMKYM   55 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g~~~~   55 (139)
                      ||-.+||+++|++.+.|-++=  .|.   .+     .+ .+.+..+|..||+.+.
T Consensus        20 ltq~~lA~~~gis~~~is~~E--~G~---~~-----p~-~~~l~~la~~l~v~l~   63 (78)
T d1x57a1          20 LTQKDLATKINEKPQVIADYE--SGR---AI-----PN-NQVLGKIERAIGLKLR   63 (78)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHH--HTC---SC-----CC-HHHHHHHHHHHTBCCS
T ss_pred             CChhHHHHcCCCCHHHHHHHH--ccC---CC-----CC-HHHHHHHHHHhCCccc
Confidence            688999999999998887765  331   11     22 3488999999998754

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.87  E-value=0.3  Score=38.67  Aligned_cols=21  Identities=38%  Similarity=0.450  Sum_probs=17.7

Q ss_pred             cCCCEEEEEeecCCchhHHHH
Q psy4669          85 KRPPVVTIMGHVDHGKTTLLD  105 (139)
Q Consensus        85 ~r~pvv~ImG~~g~GKTTLL~  105 (139)
                      +.+.+..+.|-||.|||||-.
T Consensus        12 ~~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            356778999999999999963

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=82.33  E-value=0.3  Score=39.06  Aligned_cols=26  Identities=19%  Similarity=0.349  Sum_probs=20.0

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      ..+...+.++|+.|.|||+++..|+.
T Consensus        40 r~~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          40 RRTKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             cCCCCCCeEECCCCCCHHHHHHHHHH
Confidence            44445567889999999999977653

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=82.23  E-value=0.27  Score=35.77  Aligned_cols=20  Identities=20%  Similarity=0.343  Sum_probs=17.7

Q ss_pred             cccCCCEEEEEeecCCchhH
Q psy4669          83 LMKRPPVVTIMGHVDHGKTT  102 (139)
Q Consensus        83 ~~~r~pvv~ImG~~g~GKTT  102 (139)
                      .+.+++.+.+.+|.|+|||+
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTT
T ss_pred             HhhcCCcEEEEECCCCCHHH
Confidence            45688899999999999996

>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional repressor Rex, N-terminal domain
domain: Transcriptional repressor Rex, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=81.54  E-value=0.97  Score=28.39  Aligned_cols=48  Identities=8%  Similarity=-0.000  Sum_probs=32.2

Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHhcCceeeecCCCcccCcHHHHHHHHHHhC
Q psy4669           1 MTLKDLAKSMGVDCDHLYEVMMYVDNSVNYDRPSSVIYDFQVIIDIIQKSG   51 (139)
Q Consensus         1 itv~eLA~~l~~~~~~ii~~L~~~g~~~~~~~~~~~l~~~~~~~~i~~e~g   51 (139)
                      ++-.+||+.++++++.|-|.|-..|.+..----+ ..  ++.++.|-+-+|
T Consensus        26 vSS~~La~~~gi~~~qVRKDls~fG~~G~~g~GY-~V--~~L~~~i~~iLG   73 (74)
T d2dt5a1          26 TSSEQLGGLAQVTAFQVRKDLSYFGSYGTRGVGY-TV--PVLKRELRHILG   73 (74)
T ss_dssp             ECHHHHHHHHTSCHHHHHHHHHHTTCCCCTTTCE-EH--HHHHHHHHHHHT
T ss_pred             EcHHHHHHHHCcCHHHHHHHHHHhcCCCCCCCCc-cH--HHHHHHHHHHhC
Confidence            3568999999999999999999988543211111 12  235556665555

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=80.56  E-value=0.58  Score=35.32  Aligned_cols=26  Identities=15%  Similarity=0.409  Sum_probs=22.2

Q ss_pred             ccCCCEEEEEeecCCchhHHHHHHHh
Q psy4669          84 MKRPPVVTIMGHVDHGKTTLLDTLRN  109 (139)
Q Consensus        84 ~~r~pvv~ImG~~g~GKTTLL~~L~~  109 (139)
                      .++--.+.+.||-+.|||+|+++|..
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            35666788999999999999999964