Psyllid ID: psy4687

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MSLLLNLMMLNSYNNIINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKLSLWTDGQEPAQQPMSYTLSSKNPVLQNITDYLIEEASAEEEELLGKSEENTEETEQVDPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHccccEEEEEEcccccccccEEEEEEEEcccccHHHHHHHHccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHHccHHcccEEcccccccccccHHHHHHHHHHHcHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccccHHHHHHHHHHcccEEEEEEccccccccEEEEEEEEEcccccHHHHHHHHccccccccccccEEcccHHHHEcccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccEccccccccHHHcccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHcccccEccccccccccHHHHHHHHHHHcHHHHHHHHcc
Coil and Loop (DISEMBL)
MSLLLNLMMLNSYnniinggesknepppralhrtssiflrnlaptiTKAEVENLCKRYSGFLRvaiadpqpdrrwfrrgwvtfrrDVDIKEICWNLnnirlrdcelgaivnrdlsrrvrtvsgltslkpvvqfdmklslwtdgqepaqqpmsytlssknpvlQNITDYLIEEASAEEEELlgkseenteeteqvdpNVLRVLDRLILYLRIVHSVdyynhceypnedempnrcgiihtrgsapaskvtpqEITDYCSTFQNKmsslvsspqeptpeeldqlgakKTDAEVEKFIAANTQeistdkwlcplsgkkfkgpdfirKHIFNKHAEKVEEVKKE
Flexible Loop (DISEMBL)
MSLLLNLMMLNSYNNIINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLrvaiadpqpdrrwfrrgwvtfrrdvdIKEICwnlnnirlrdcelgaivnrdlsrrvrtvsgltslkpvvqFDMKLSLWTDGQEPAQQPMSYTLSSKNPVLQNITDYLIEEASAEEEEllgkseenteeteqvdpnvlRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRgsapaskvtpQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAantqeistdkwlcplsgKKFKGPDFIRKHIFNkhaekveevkke
Low Complexity Region (SEG)
mslllnlmmlnsynniinGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKLSLWTDGQEPAQQPMSYTLSSKNPVLQNITDYLIeeasaeeeellgkseenteeTEQVDPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAekveevkke
Disordered region (IsUnstruct)
***LLNLMMLNSYNNII*****************SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKLSLWT********************LQNITDYLI**************************NVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHT****************YC***********************************KFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFN************
Disordered Region (DISOPRED)
********************************RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKLSLWT******************************************************PNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRC**********************CSTFQNKMSSLVSS***********LGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEK*******
Disordered Region (DISEMBL)
MSLLLNLMMLNSYNNIINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKLSLWTDGQEPAQQPMSYTLSSKNPVLQNITDYLIEEASA*******************DPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNK******************LGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHA*********
Disordered Region (DISPRO)
*SLLLNLMMLNSYNNIINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKLSLWTDGQE**QQPMSYTLSSKNPVLQNITDYLIEEASAEEE*LL**********EQVDPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLLLNLMMLNSYNNIINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKLSLWTDGQEPAQQPMSYTLSSKNPVLQNITDYLxxxxxxxxxxxxxxxxxxxxxTEQVDPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	339	2.2.26 [Sep-21-2011]
Q17FR9	937	Serrate RNA effector mole	N/A	N/A	0.920	0.332	0.672	1e-126
B4NYV0	944	Serrate RNA effector mole	N/A	N/A	0.917	0.329	0.619	1e-117
Q5TUF1	967	Serrate RNA effector mole	yes	N/A	0.917	0.321	0.653	1e-116
B4LIK8	963	Serrate RNA effector mole	N/A	N/A	0.932	0.328	0.597	1e-113
Q28WQ8	951	Serrate RNA effector mole	yes	N/A	0.914	0.325	0.620	1e-113
B4H732	951	Serrate RNA effector mole	N/A	N/A	0.914	0.325	0.618	1e-112
B3MJ69	948	Serrate RNA effector mole	N/A	N/A	0.917	0.328	0.632	1e-112
B3N3F7	947	Serrate RNA effector mole	N/A	N/A	0.917	0.328	0.619	1e-112
B4MR46	1000	Serrate RNA effector mole	N/A	N/A	0.932	0.316	0.609	1e-111
B4J497	1011	Serrate RNA effector mole	N/A	N/A	0.917	0.307	0.602	1e-111

>sp|Q17FR9|SRRT_AEDAE Serrate RNA effector molecule homolog OS=Aedes aegypti GN=Ars2 PE=3 SV=1

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/330 (67%), Positives = 260/330 (78%), Gaps = 18/330 (5%)

Query: 28  PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDV 87
           PRALHRTSSIFLRNLAP+ITKAEVE +CKRY+GFLRVAIADP  +RRWFRRGWVTFRRDV
Sbjct: 508 PRALHRTSSIFLRNLAPSITKAEVEAMCKRYNGFLRVAIADPLLERRWFRRGWVTFRRDV 567

Query: 88  DIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKL---------- 137
           +IKEICWNLNNIRLRDCELGAIVN+DLSRRVR V+GLT  K +V+ D+KL          
Sbjct: 568 NIKEICWNLNNIRLRDCELGAIVNKDLSRRVRPVNGLTCHKTIVRSDIKLCAKIAHNLDD 627

Query: 138 --SLWTDGQEPAQQ-PMSYTLSSKNPVLQNITDYLIEEASAEEEELLGKSEE-----NTE 189
              LW + ++  ++   S+ L SKNPVLQNITDYLIEEASAEE+ELLG S E     N  
Sbjct: 628 KVGLWKEQEDNGEKNGESFGLQSKNPVLQNITDYLIEEASAEEDELLGLSTEAAKKSNDG 687

Query: 190 ETEQVDPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTP 249
           E  + D  ++ VLD+LILYLR+VHS+D+YNHCEYP EDEMPNRCGIIH RG  P +KVT 
Sbjct: 688 ELVERDTQLIEVLDKLILYLRVVHSIDFYNHCEYPYEDEMPNRCGIIHARGPPPQNKVTS 747

Query: 250 QEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCP 309
            EI +Y  TF+ KM S ++   +   EE+ +LGAK  +AEVEKFI ANTQE++ DKWLCP
Sbjct: 748 NEIQEYIRTFEGKMGSFLARAVDLEEEEMKKLGAKDAEAEVEKFIQANTQELAKDKWLCP 807

Query: 310 LSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           LSGKKFKGPDF+RKHIFNKH EKV+EV+KE
Sbjct: 808 LSGKKFKGPDFVRKHIFNKHNEKVDEVRKE 837

Acts as a mediator between the cap-binding complex (CBC) and RNA-mediated gene silencing (RNAi). Involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. Also involved microRNA (miRNA)-mediated silencing by contributing to the stability and delivery of primary miRNA transcripts to the primary miRNA processing complex.
Aedes aegypti (taxid: 7159)

>sp|B4NYV0|SRRT_DROYA Serrate RNA effector molecule homolog OS=Drosophila yakuba GN=Ars2 PE=3 SV=1

 Score =  421 bits (1081), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/339 (61%), Positives = 254/339 (74%), Gaps = 28/339 (8%)

Query: 28  PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDV 87
           PRALHRTSSIFLRNLAP+IT+AE+E +C R++G+LRVAIADP  +RRW+RRGW+TF RDV
Sbjct: 509 PRALHRTSSIFLRNLAPSITRAEIEAVCNRFTGYLRVAIADPLVERRWYRRGWITFMRDV 568

Query: 88  DIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKL---------- 137
           +IKEICW LNN RLRDCE+GAIVNRDLSRRVR  +GLT+ K VV+ D+KL          
Sbjct: 569 NIKEICWGLNNQRLRDCEMGAIVNRDLSRRVRPANGLTAHKQVVRSDIKLCAKIALNLDE 628

Query: 138 --SLW----TDGQEPAQQPMS--------YTLSSKNPVLQNITDYLIEEASAEEEELLGK 183
              LW    TD    A+   S        Y  +SKNPVLQNITDYLIEEASAEE+ELLG 
Sbjct: 629 RFRLWAEVPTDDSNSARADESSENGSGSTYGFNSKNPVLQNITDYLIEEASAEEDELLGL 688

Query: 184 SEENTE---ETEQVDPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRG 240
           + EN +   E  + D  ++ VLDRL+LYLRIVHSVDYYNHCEYP EDEMPNRCGIIH RG
Sbjct: 689 TGENKDTEGEAIERDEQLISVLDRLVLYLRIVHSVDYYNHCEYPYEDEMPNRCGIIHARG 748

Query: 241 SAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQE 300
            AP  +VT  ++ +Y  T+++K+   ++     + EE+  LGAK  + EVEKF+ ANTQE
Sbjct: 749 PAPV-RVTNNDVQEYIKTYESKLQQFLTKTVLLSDEEIKDLGAKDAETEVEKFVQANTQE 807

Query: 301 ISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           ++ DKWLCPLSGKKFKGP+FIRKHIFNKH EKV+EV+KE
Sbjct: 808 LAKDKWLCPLSGKKFKGPEFIRKHIFNKHDEKVDEVRKE 846

Acts as a mediator between the cap-binding complex (CBC) and RNA-mediated gene silencing (RNAi). Involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. Also involved microRNA (miRNA)-mediated silencing by contributing to the stability and delivery of primary miRNA transcripts to the primary miRNA processing complex containing drosha and pasha.

Drosophila yakuba (taxid: 7245)

>sp|Q5TUF1|SRRT_ANOGA Serrate RNA effector molecule homolog OS=Anopheles gambiae GN=Ars2 PE=3 SV=3

 Score =  417 bits (1073), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/341 (65%), Positives = 260/341 (76%), Gaps = 30/341 (8%)

Query: 29  RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVD 88
           RALHRTSSIFLRNLAP+ITKAEVE +C+RY+GFLRVAIADP  +RRWFRRGWVTF+R+V+
Sbjct: 518 RALHRTSSIFLRNLAPSITKAEVEAMCRRYNGFLRVAIADPLLERRWFRRGWVTFKREVN 577

Query: 89  IKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKLS---------- 138
           IKEICWNLNNIRLRDCELGAIVN+DLSRRVR V+G+T  K VV+ D+KL           
Sbjct: 578 IKEICWNLNNIRLRDCELGAIVNKDLSRRVRPVNGITCHKTVVRSDIKLGAKIAHNLDDK 637

Query: 139 --LWTDGQEPA--------------QQPMSYTLSSKNPVLQNITDYLIEEASAEEEELLG 182
             LW +    A              Q   S+ L SKNPVLQNITDYLIEEASAEEEELLG
Sbjct: 638 WGLWKETPTAASGTGEAGDKNGSEVQPEESFGLQSKNPVLQNITDYLIEEASAEEEELLG 697

Query: 183 KSEENTEETE----QVDPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHT 238
            SE++ + +E    + DP ++ VLDRLILYLRIVHSVD+YNHCEYP EDEMPNRCGIIH 
Sbjct: 698 LSEDSKKVSEGELIERDPQLIEVLDRLILYLRIVHSVDFYNHCEYPYEDEMPNRCGIIHA 757

Query: 239 RGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANT 298
           RG    SKV   EI +Y  TF+ KM+S ++   +    ++ +LGAK  +AEVEKFI ANT
Sbjct: 758 RGPPSQSKVMSNEIQEYIRTFEGKMASFLTRMVDIDETDMKKLGAKDAEAEVEKFITANT 817

Query: 299 QEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           QE++ DKWLCPLSGKKFKGPDF+RKHIFNKHAEKVEEV+KE
Sbjct: 818 QELAKDKWLCPLSGKKFKGPDFVRKHIFNKHAEKVEEVRKE 858

Acts as a mediator between the cap-binding complex (CBC) and RNA-mediated gene silencing (RNAi). Involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. Also involved microRNA (miRNA)-mediated silencing by contributing to the stability and delivery of primary miRNA transcripts to the primary miRNA processing complex.

Anopheles gambiae (taxid: 7165)

>sp|B4LIK8|SRRT_DROVI Serrate RNA effector molecule homolog OS=Drosophila virilis GN=Ars2 PE=3 SV=1

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/350 (59%), Positives = 258/350 (73%), Gaps = 34/350 (9%)

Query: 23  KNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVT 82
           K+ P PRALHRTSSIFLRNLAP+ITKAE+E +C R+SG+LRVAIADP  +RRW+RRGW+T
Sbjct: 517 KDGPQPRALHRTSSIFLRNLAPSITKAEIEAICTRFSGYLRVAIADPLVERRWYRRGWIT 576

Query: 83  FRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKL----- 137
           F RDV+IKEICW+LNN RLRDCE+GAIVNRDLSRRVR  +G+T+ K +V+ D+KL     
Sbjct: 577 FTRDVNIKEICWSLNNQRLRDCEMGAIVNRDLSRRVRPANGITAHKQIVRADIKLCAKIA 636

Query: 138 -------SLWTDGQEPAQQP------------------MSYTLSSKNPVLQNITDYLIEE 172
                   LW++     QQP                   +Y  +SKNPVLQNITDYLIEE
Sbjct: 637 MNLDERFKLWSEADSTQQQPDAESKPSADATNGSGGSSTTYGFNSKNPVLQNITDYLIEE 696

Query: 173 ASAEEEELLGKSEENTE-ETEQV--DPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEM 229
           ASAEEEELLG + +N + E E +  D  ++ VLDRL+LYLRIVHSVDYYNHCEYP EDEM
Sbjct: 697 ASAEEEELLGLAGDNKDGEGEPIERDEQLISVLDRLVLYLRIVHSVDYYNHCEYPYEDEM 756

Query: 230 PNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAE 289
           PNRCGIIH RG  P  +VT  ++ +Y   +  K+   ++   + + +E+ +LGAK  + E
Sbjct: 757 PNRCGIIHARGPPPM-RVTSNDVQEYIKAYDGKLQQFLTKSVQLSDDEIKELGAKNPETE 815

Query: 290 VEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           VEKF+ ANTQE++ DKWLCPLSGKKFKGP+FIRKHIFNKH EKV+EV+KE
Sbjct: 816 VEKFVQANTQELAKDKWLCPLSGKKFKGPEFIRKHIFNKHEEKVDEVRKE 865

Acts as a mediator between the cap-binding complex (CBC) and RNA-mediated gene silencing (RNAi). Involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. Also involved microRNA (miRNA)-mediated silencing by contributing to the stability and delivery of primary miRNA transcripts to the primary miRNA processing complex containing drosha and pasha.

Drosophila virilis (taxid: 7244)

>sp|Q28WQ8|SRRT_DROPS Serrate RNA effector molecule homolog OS=Drosophila pseudoobscura pseudoobscura GN=Ars2 PE=3 SV=2

 Score =  407 bits (1047), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/343 (62%), Positives = 257/343 (74%), Gaps = 33/343 (9%)

Query: 27  PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRD 86
           PPRA+HRTSSIFLRNLAP+ITKAE+E LC R+SG+LR AIADP  +RRW+RRGW+TF RD
Sbjct: 515 PPRAMHRTSSIFLRNLAPSITKAEIEALCSRFSGYLRTAIADPLVERRWYRRGWITFTRD 574

Query: 87  VDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKL--------- 137
           V+IKEICW+LNN RLRDCE+GAIVNRDLSRRVR  +G+T+ K VV+ D+KL         
Sbjct: 575 VNIKEICWSLNNQRLRDCEMGAIVNRDLSRRVRPANGITAHKQVVRSDIKLCARIVMNLD 634

Query: 138 ---SLWTDGQEPAQQP---------------MSYTLSSKNPVLQNITDYLIEEASAEEEE 179
               LW++G  P  +P                SY  +SKNPVLQNITDYLIEEASAEEEE
Sbjct: 635 EKFKLWSEG--PLSKPSPASDSEATAANGSGSSYGFNSKNPVLQNITDYLIEEASAEEEE 692

Query: 180 LLGKSEENTE-ETEQV--DPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGII 236
           LLG S +  + E E +  D  +L VLDRL+LYLRIVHSVDYYNHCEYP EDEMPNRCGII
Sbjct: 693 LLGLSGDRKDGEGEPIERDEQLLSVLDRLVLYLRIVHSVDYYNHCEYPYEDEMPNRCGII 752

Query: 237 HTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAA 296
           H RG AP S+VT  E+ +Y  +++ K+   ++     + +++  LGAK  D EVEKF+ A
Sbjct: 753 HARGPAP-SRVTSNELNEYIKSYEGKLLQFLTKTALLSEDQIKDLGAKNADTEVEKFVQA 811

Query: 297 NTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           NTQE++ DKWLCPLSGKKFKGP+FIRKHIFNKH EKV+EV+KE
Sbjct: 812 NTQELAKDKWLCPLSGKKFKGPEFIRKHIFNKHEEKVDEVRKE 854

Acts as a mediator between the cap-binding complex (CBC) and RNA-mediated gene silencing (RNAi). Involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. Also involved microRNA (miRNA)-mediated silencing by contributing to the stability and delivery of primary miRNA transcripts to the primary miRNA processing complex containing drosha and pasha.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4H732|SRRT_DROPE Serrate RNA effector molecule homolog OS=Drosophila persimilis GN=Ars2 PE=3 SV=1

 Score =  405 bits (1042), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/343 (61%), Positives = 256/343 (74%), Gaps = 33/343 (9%)

Query: 27  PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRD 86
           PPR +HRTSSIFLRNLAP+ITKAE+E LC R+SG+LR AIADP  +RRW+RRGW+TF RD
Sbjct: 515 PPRDMHRTSSIFLRNLAPSITKAEIEALCSRFSGYLRTAIADPLVERRWYRRGWITFTRD 574

Query: 87  VDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKL--------- 137
           V+IKEICW+LNN RLRDCE+GAIVNRDLSRRVR  +G+T+ K VV+ D+KL         
Sbjct: 575 VNIKEICWSLNNQRLRDCEMGAIVNRDLSRRVRPANGITAHKQVVRSDIKLCARIVMNLD 634

Query: 138 ---SLWTDGQEPAQQP---------------MSYTLSSKNPVLQNITDYLIEEASAEEEE 179
               LW++G  P  +P                SY  +SKNPVLQNITDYLIEEASAEEEE
Sbjct: 635 EKFKLWSEG--PLSKPSPASDSEATAANGSGSSYGFNSKNPVLQNITDYLIEEASAEEEE 692

Query: 180 LLGKSEENTE-ETEQV--DPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGII 236
           LLG S +  + E E +  D  +L VLDRL+LYLRIVHSVDYYNHCEYP EDEMPNRCGII
Sbjct: 693 LLGLSGDRKDGEGEPIERDEQLLSVLDRLVLYLRIVHSVDYYNHCEYPYEDEMPNRCGII 752

Query: 237 HTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAA 296
           H RG AP S+VT  E+ +Y  +++ K+   ++     + +++  LGAK  D EVEKF+ A
Sbjct: 753 HARGPAP-SRVTSNELNEYIKSYEGKLLQFLTKTALLSEDQIKDLGAKNADTEVEKFVQA 811

Query: 297 NTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           NTQE++ DKWLCPLSGKKFKGP+FIRKHIFNKH EKV+EV+KE
Sbjct: 812 NTQELAKDKWLCPLSGKKFKGPEFIRKHIFNKHEEKVDEVRKE 854

Acts as a mediator between the cap-binding complex (CBC) and RNA-mediated gene silencing (RNAi). Involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. Also involved microRNA (miRNA)-mediated silencing by contributing to the stability and delivery of primary miRNA transcripts to the primary miRNA processing complex containing drosha and pasha.

Drosophila persimilis (taxid: 7234)

>sp|B3MJ69|SRRT_DROAN Serrate RNA effector molecule homolog OS=Drosophila ananassae GN=Ars2 PE=3 SV=1

 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/340 (63%), Positives = 257/340 (75%), Gaps = 29/340 (8%)

Query: 28  PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDV 87
           PRALHRTSSIFLRNLAP+ITKAE+E +C R+SG+LRVAIADP  +RRW+RRGW+TF RDV
Sbjct: 512 PRALHRTSSIFLRNLAPSITKAEIEAVCTRFSGYLRVAIADPLVERRWYRRGWITFTRDV 571

Query: 88  DIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKL---------- 137
           +IKEICW+LNN RLRDCE+GAIVNRDLSRRVR  +G+T+ K VV+ D+KL          
Sbjct: 572 NIKEICWSLNNQRLRDCEMGAIVNRDLSRRVRPANGITAHKQVVRSDIKLCAKIILNLDE 631

Query: 138 --SLWTD------------GQEPAQQPMS-YTLSSKNPVLQNITDYLIEEASAEEEELLG 182
              LW +            G+  A    S Y + SKNPVLQNITDYLIEEASAEEEELLG
Sbjct: 632 RFRLWPEPTSDDSIPFDRAGESSANGNTSTYGIKSKNPVLQNITDYLIEEASAEEEELLG 691

Query: 183 KSEENTE-ETEQV--DPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTR 239
            + EN + E E +  D ++L VLDRL+LYLRIVHSVDYYNHCEYP EDEMPNRCGIIH R
Sbjct: 692 LTGENKDAEGEPIERDEHLLAVLDRLVLYLRIVHSVDYYNHCEYPYEDEMPNRCGIIHAR 751

Query: 240 GSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQ 299
           G AP S+VT  +I +Y  T+++K+   ++     + EE   LGAK  + EVEKF+ ANTQ
Sbjct: 752 GPAP-SRVTSNDIHEYVKTYESKLQQFLTKTALLSDEETKDLGAKDAETEVEKFVQANTQ 810

Query: 300 EISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           E++ DKWLCPLSGKKFKGP+FIRKHIFNKH EKV+EV+KE
Sbjct: 811 ELAKDKWLCPLSGKKFKGPEFIRKHIFNKHEEKVDEVRKE 850

Acts as a mediator between the cap-binding complex (CBC) and RNA-mediated gene silencing (RNAi). Involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. Also involved microRNA (miRNA)-mediated silencing by contributing to the stability and delivery of primary miRNA transcripts to the primary miRNA processing complex containing drosha and pasha.

Drosophila ananassae (taxid: 7217)

>sp|B3N3F7|SRRT_DROER Serrate RNA effector molecule homolog OS=Drosophila erecta GN=Ars2 PE=3 SV=1

 Score =  403 bits (1036), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/339 (61%), Positives = 255/339 (75%), Gaps = 28/339 (8%)

Query: 28  PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDV 87
           PRALHRTSSIFLRNLAP+IT+AE+E +C R++G+LRVAIADP  +RRW+RRGW+TF RDV
Sbjct: 512 PRALHRTSSIFLRNLAPSITRAEIETVCNRFTGYLRVAIADPLVERRWYRRGWITFMRDV 571

Query: 88  DIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKL---------- 137
           +IKEICW LNN RLRDCE+GAIVNRDLSRRVR  +G+T+ K VV+ D+KL          
Sbjct: 572 NIKEICWGLNNHRLRDCEMGAIVNRDLSRRVRPANGITAHKQVVRSDIKLCAKIALNLDE 631

Query: 138 --SLW----TDGQEPAQQPMS--------YTLSSKNPVLQNITDYLIEEASAEEEELLGK 183
              LW    TD   P++   S        Y  +SKNPVLQNITDYLIEEASAEEEELLG 
Sbjct: 632 RFRLWAEVPTDDSHPSRADESTENGSGSTYGFNSKNPVLQNITDYLIEEASAEEEELLGL 691

Query: 184 SEENTE---ETEQVDPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRG 240
           + EN +   E  + D  ++ VLDRL+LYLRIVHSVDYYNHCEYP EDEMPNRCGIIH RG
Sbjct: 692 TGENKDTDGEPIERDEQLISVLDRLVLYLRIVHSVDYYNHCEYPYEDEMPNRCGIIHARG 751

Query: 241 SAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQE 300
            AP  +VT  ++ +Y  T+++K+   ++     + EE+  LGAK  + EVEKF+ ANTQE
Sbjct: 752 PAPV-RVTNNDVQEYIKTYESKLQQFLTKTVLLSDEEIKDLGAKDPETEVEKFVQANTQE 810

Query: 301 ISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           ++ DKWLCPLSGKKFKGP+FIRKHIFNKH EKV+EV+KE
Sbjct: 811 LAKDKWLCPLSGKKFKGPEFIRKHIFNKHEEKVDEVRKE 849

Acts as a mediator between the cap-binding complex (CBC) and RNA-mediated gene silencing (RNAi). Involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. Also involved microRNA (miRNA)-mediated silencing by contributing to the stability and delivery of primary miRNA transcripts to the primary miRNA processing complex containing drosha and pasha.

Drosophila erecta (taxid: 7220)

>sp|B4MR46|SRRT_DROWI Serrate RNA effector molecule homolog OS=Drosophila willistoni GN=Ars2 PE=3 SV=1

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/348 (60%), Positives = 255/348 (73%), Gaps = 32/348 (9%)

Query: 23  KNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVT 82
           K+ P PRALHRT+SIFLRNLAP+ITKAE+E +C R  G+LRVAIADP  +RRW+RRGW+T
Sbjct: 555 KDGPQPRALHRTASIFLRNLAPSITKAEIEAICNRSPGYLRVAIADPLVERRWYRRGWIT 614

Query: 83  FRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKL----- 137
           F RDV+IKEICW+LNN RLRDCELGAIVNRDLSRRVR  +G+T+ K VV+ D+KL     
Sbjct: 615 FSRDVNIKEICWSLNNQRLRDCELGAIVNRDLSRRVRPTNGITAHKQVVRSDIKLCAKIA 674

Query: 138 -------SLWTDGQEPAQQ----------------PMSYTLSSKNPVLQNITDYLIEEAS 174
                   LW D   PA                    +Y  ++KNPVLQNITDYLIEEAS
Sbjct: 675 MNLDERFRLWVDEPAPAADGKGETATDATNGSSSGATTYGFNTKNPVLQNITDYLIEEAS 734

Query: 175 AEEEELLGKS-EENTEETEQV--DPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPN 231
           AEEEELLG S ++N  E E +  D  ++ VLDRL+LYLRIVHSVDYYNHCEYP EDEMPN
Sbjct: 735 AEEEELLGLSGDQNDVEGEPIVRDEQLIAVLDRLLLYLRIVHSVDYYNHCEYPYEDEMPN 794

Query: 232 RCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVE 291
           RCGIIH RG AP  KVT  +I +Y  +++ K+   ++     T +++  LGAK  + EVE
Sbjct: 795 RCGIIHARGPAPM-KVTSNDIQEYIKSYEGKLQQFLTKTVLLTDDDIKDLGAKDAETEVE 853

Query: 292 KFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           KF+ ANTQE++ DKWLCPLSGKKFKGP+FIRKHIFNKH EKV+EV+KE
Sbjct: 854 KFVQANTQELAKDKWLCPLSGKKFKGPEFIRKHIFNKHEEKVDEVRKE 901

Acts as a mediator between the cap-binding complex (CBC) and RNA-mediated gene silencing (RNAi). Involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. Also involved microRNA (miRNA)-mediated silencing by contributing to the stability and delivery of primary miRNA transcripts to the primary miRNA processing complex containing drosha and pasha.

Drosophila willistoni (taxid: 7260)

>sp|B4J497|SRRT_DROGR Serrate RNA effector molecule homolog OS=Drosophila grimshawi GN=Ars2 PE=3 SV=1

 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/340 (60%), Positives = 255/340 (75%), Gaps = 29/340 (8%)

Query: 28  PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDV 87
           PRALHRTSSIFLRNLAP+ITKAE+E +C R+SG+LRVAIADP  +RRW+RRGW+TF RDV
Sbjct: 575 PRALHRTSSIFLRNLAPSITKAEIETICTRFSGYLRVAIADPLVERRWYRRGWITFTRDV 634

Query: 88  DIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKL---------- 137
           +IKEICW+LNN RLRDCE+GAIVNRDLSRRVR  +G+T+ K +V+ D+KL          
Sbjct: 635 NIKEICWSLNNQRLRDCEMGAIVNRDLSRRVRPANGITAHKQIVRSDIKLCAKIAMNLDE 694

Query: 138 --SLWTDG-------------QEPAQQPMSYTLSSKNPVLQNITDYLIEEASAEEEELL- 181
              LW++              +E      SY  +SKNPVLQNITDYLIEEASAEEEELL 
Sbjct: 695 RFKLWSEVDNADNAELNPEELKEATNGSGSYGFNSKNPVLQNITDYLIEEASAEEEELLG 754

Query: 182 --GKSEENTEETEQVDPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTR 239
             G S++   E  + D  +++VLDRL+LYLR+VHSVDYYNHCEYP EDEMPNRCGIIH R
Sbjct: 755 LAGDSKDGEGEPIERDEPLIQVLDRLVLYLRVVHSVDYYNHCEYPYEDEMPNRCGIIHAR 814

Query: 240 GSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQ 299
           G AP  +VT  ++ +Y  +++ K+   ++   + + E + +LGAK  + EVEKF+ ANTQ
Sbjct: 815 GPAPM-RVTSNDVQEYIKSYEGKLQQFLAKTVQLSDENIKELGAKNPEKEVEKFVQANTQ 873

Query: 300 EISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           E++ DKWLCPLSGKKFKGP+FIRKHIFNKH EKV+EV+KE
Sbjct: 874 ELAKDKWLCPLSGKKFKGPEFIRKHIFNKHEEKVDEVRKE 913

Acts as a mediator between the cap-binding complex (CBC) and RNA-mediated gene silencing (RNAi). Involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. Also involved microRNA (miRNA)-mediated silencing by contributing to the stability and delivery of primary miRNA transcripts to the primary miRNA processing complex containing drosha and pasha.

Drosophila grimshawi (taxid: 7222)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
170034245	747	arsenite-resistance protein [Culex quinq	0.920	0.417	0.662	1e-125
157135681	937	arsenite-resistance protein [Aedes aegyp	0.920	0.332	0.672	1e-124
157135683	935	arsenite-resistance protein [Aedes aegyp	0.920	0.333	0.672	1e-124
383847249	909	PREDICTED: serrate RNA effector molecule	0.955	0.356	0.647	1e-124
380018659	919	PREDICTED: serrate RNA effector molecule	0.955	0.352	0.631	1e-123
328791253	920	PREDICTED: serrate RNA effector molecule	0.955	0.352	0.629	1e-123
350407862	920	PREDICTED: serrate RNA effector molecule	0.955	0.352	0.631	1e-122
340721924	916	PREDICTED: serrate RNA effector molecule	0.955	0.353	0.631	1e-122
350407864	914	PREDICTED: serrate RNA effector molecule	0.955	0.354	0.631	1e-122
322785389	953	hypothetical protein SINV_04615 [Solenop	0.955	0.339	0.632	1e-122

>gi|170034245|ref|XP_001844985.1| arsenite-resistance protein [Culex quinquefasciatus] gi|167875497|gb|EDS38880.1| arsenite-resistance protein [Culex quinquefasciatus]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/335 (66%), Positives = 259/335 (77%), Gaps = 23/335 (6%)

Query: 28  PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDV 87
           PRALHRTSSIFLRNLAP+ITK EVE +CKRY+GFLRVAIADP  +RRWFRRGWVTFRRDV
Sbjct: 314 PRALHRTSSIFLRNLAPSITKLEVEAMCKRYNGFLRVAIADPLLERRWFRRGWVTFRRDV 373

Query: 88  DIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKL---------- 137
           +IKEICWNLNNIRLRDCELGAIVN+DLSRRVR V+G+T  K +V+ D+KL          
Sbjct: 374 NIKEICWNLNNIRLRDCELGAIVNKDLSRRVRPVNGITCHKTIVRSDIKLCAKIAHNLDD 433

Query: 138 --SLWTD------GQEPAQQPMSYTLSSKNPVLQNITDYLIEEASAEEEELLGKSEENTE 189
              LW D      G +  +    + L+SKNPVLQNITDYLIEEASAEE+ELLG SE   +
Sbjct: 434 KAGLWKDSTEDNNGGQGEKNGEFFGLNSKNPVLQNITDYLIEEASAEEDELLGLSEAEAK 493

Query: 190 ETE-----QVDPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPA 244
           +T      + D  +L VLD+LILYLR+VHSVD+YNHCEYP EDEMPNRCGIIH RG AP 
Sbjct: 494 KTTDGELVERDAQLLEVLDKLILYLRVVHSVDFYNHCEYPYEDEMPNRCGIIHARGPAPQ 553

Query: 245 SKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTD 304
           +KVT  E+ +Y  TF+ KM S ++       EE+ +LGAK  +AEVEKFI ANTQE++ D
Sbjct: 554 NKVTTNELQEYVRTFEGKMGSFLARVSTLEEEEMKKLGAKDCEAEVEKFIQANTQELAKD 613

Query: 305 KWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           KWLCPLSGKKFKGPDF+RKHIFNKH EKV+EV+KE
Sbjct: 614 KWLCPLSGKKFKGPDFVRKHIFNKHGEKVDEVRKE 648

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157135681|ref|XP_001663544.1| arsenite-resistance protein [Aedes aegypti] gi|122095165|sp|Q17FR9.1|SRRT_AEDAE RecName: Full=Serrate RNA effector molecule homolog; AltName: Full=Arsenite-resistance protein 2 homolog gi|108881206|gb|EAT45431.1| AAEL003287-PA [Aedes aegypti]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/330 (67%), Positives = 260/330 (78%), Gaps = 18/330 (5%)

Query: 28  PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDV 87
           PRALHRTSSIFLRNLAP+ITKAEVE +CKRY+GFLRVAIADP  +RRWFRRGWVTFRRDV
Sbjct: 508 PRALHRTSSIFLRNLAPSITKAEVEAMCKRYNGFLRVAIADPLLERRWFRRGWVTFRRDV 567

Query: 88  DIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKL---------- 137
           +IKEICWNLNNIRLRDCELGAIVN+DLSRRVR V+GLT  K +V+ D+KL          
Sbjct: 568 NIKEICWNLNNIRLRDCELGAIVNKDLSRRVRPVNGLTCHKTIVRSDIKLCAKIAHNLDD 627

Query: 138 --SLWTDGQEPAQQ-PMSYTLSSKNPVLQNITDYLIEEASAEEEELLGKSEE-----NTE 189
              LW + ++  ++   S+ L SKNPVLQNITDYLIEEASAEE+ELLG S E     N  
Sbjct: 628 KVGLWKEQEDNGEKNGESFGLQSKNPVLQNITDYLIEEASAEEDELLGLSTEAAKKSNDG 687

Query: 190 ETEQVDPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTP 249
           E  + D  ++ VLD+LILYLR+VHS+D+YNHCEYP EDEMPNRCGIIH RG  P +KVT 
Sbjct: 688 ELVERDTQLIEVLDKLILYLRVVHSIDFYNHCEYPYEDEMPNRCGIIHARGPPPQNKVTS 747

Query: 250 QEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCP 309
            EI +Y  TF+ KM S ++   +   EE+ +LGAK  +AEVEKFI ANTQE++ DKWLCP
Sbjct: 748 NEIQEYIRTFEGKMGSFLARAVDLEEEEMKKLGAKDAEAEVEKFIQANTQELAKDKWLCP 807

Query: 310 LSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           LSGKKFKGPDF+RKHIFNKH EKV+EV+KE
Sbjct: 808 LSGKKFKGPDFVRKHIFNKHNEKVDEVRKE 837

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157135683|ref|XP_001663545.1| arsenite-resistance protein [Aedes aegypti] gi|108881207|gb|EAT45432.1| AAEL003287-PB [Aedes aegypti]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/330 (67%), Positives = 260/330 (78%), Gaps = 18/330 (5%)

Query: 28  PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDV 87
           PRALHRTSSIFLRNLAP+ITKAEVE +CKRY+GFLRVAIADP  +RRWFRRGWVTFRRDV
Sbjct: 508 PRALHRTSSIFLRNLAPSITKAEVEAMCKRYNGFLRVAIADPLLERRWFRRGWVTFRRDV 567

Query: 88  DIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDMKL---------- 137
           +IKEICWNLNNIRLRDCELGAIVN+DLSRRVR V+GLT  K +V+ D+KL          
Sbjct: 568 NIKEICWNLNNIRLRDCELGAIVNKDLSRRVRPVNGLTCHKTIVRSDIKLCAKIAHNLDD 627

Query: 138 --SLWTDGQEPAQQ-PMSYTLSSKNPVLQNITDYLIEEASAEEEELLGKSEE-----NTE 189
              LW + ++  ++   S+ L SKNPVLQNITDYLIEEASAEE+ELLG S E     N  
Sbjct: 628 KVGLWKEQEDNGEKNGESFGLQSKNPVLQNITDYLIEEASAEEDELLGLSTEAAKKSNDG 687

Query: 190 ETEQVDPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTP 249
           E  + D  ++ VLD+LILYLR+VHS+D+YNHCEYP EDEMPNRCGIIH RG  P +KVT 
Sbjct: 688 ELVERDTQLIEVLDKLILYLRVVHSIDFYNHCEYPYEDEMPNRCGIIHARGPPPQNKVTS 747

Query: 250 QEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCP 309
            EI +Y  TF+ KM S ++   +   EE+ +LGAK  +AEVEKFI ANTQE++ DKWLCP
Sbjct: 748 NEIQEYIRTFEGKMGSFLARAVDLEEEEMKKLGAKDAEAEVEKFIQANTQELAKDKWLCP 807

Query: 310 LSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           LSGKKFKGPDF+RKHIFNKH EKV+EV+KE
Sbjct: 808 LSGKKFKGPDFVRKHIFNKHNEKVDEVRKE 837

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847249|ref|XP_003699267.1| PREDICTED: serrate RNA effector molecule homolog [Megachile rotundata]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/357 (64%), Positives = 269/357 (75%), Gaps = 33/357 (9%)

Query: 16  IINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRW 75
           +I+      E  PRALH+TSSIFLRNLAPTITKAEVE +CKR+ GFLRVAIADPQP+RRW
Sbjct: 445 VIDLASEDKEKEPRALHKTSSIFLRNLAPTITKAEVEAMCKRFPGFLRVAIADPQPERRW 504

Query: 76  FRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDM 135
           FRRGWV+F R V+IKEICW+LNNIRLRDCELGAIVNRDLSRR+RTV+GLTS K +V+ D+
Sbjct: 505 FRRGWVSFERQVNIKEICWSLNNIRLRDCELGAIVNRDLSRRIRTVNGLTSHKQIVRHDI 564

Query: 136 KLS------------LWT-------------DGQEPAQQPMSYTLSSKNPVLQNITDYLI 170
           KLS            LW              D +E      ++ LSSKNPVL+NITDYLI
Sbjct: 565 KLSAKIVHNLDNRVGLWNEEKKEDNAVKQEDDNKENKSMQNAFGLSSKNPVLKNITDYLI 624

Query: 171 EEASAEEEELLGKSEENTEETE--------QVDPNVLRVLDRLILYLRIVHSVDYYNHCE 222
           EEASAEEEELLG S +  E           + DP +++VLDRLILYLRIVHSVDYYNHCE
Sbjct: 625 EEASAEEEELLGMSGDQEEGQLGGDGDGPIERDPTLIKVLDRLILYLRIVHSVDYYNHCE 684

Query: 223 YPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLG 282
           YPNEDEMPNRCGI+H RGS P +KV+  E+++YC  F+NKM++ +      + EE D+LG
Sbjct: 685 YPNEDEMPNRCGIMHVRGSPPTAKVSSTELSEYCRNFENKMAAFLQPVATLSQEEFDKLG 744

Query: 283 AKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           AK  +AEVEKF+ ANTQE+S DKWLCPLSGKKFKGPDFIRKHIFNKHAEKV EVK E
Sbjct: 745 AKNAEAEVEKFVQANTQELSKDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVAEVKAE 801

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018659|ref|XP_003693243.1| PREDICTED: serrate RNA effector molecule homolog [Apis florea]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/364 (63%), Positives = 271/364 (74%), Gaps = 40/364 (10%)

Query: 16  IINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRW 75
           +I+      E  PRALH+TSSIFLRNLAPTITKAEVE +CKR+ GFLRVAIADPQP+RRW
Sbjct: 450 VIDLASEDKEKEPRALHKTSSIFLRNLAPTITKAEVEAMCKRFPGFLRVAIADPQPERRW 509

Query: 76  FRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDM 135
           FRRGWV+F R V+IKEICW+LNNIRLRDCELGAIVNRDLSRR+RTV+G+TS K +V+ D+
Sbjct: 510 FRRGWVSFERQVNIKEICWSLNNIRLRDCELGAIVNRDLSRRIRTVNGITSHKQIVRHDI 569

Query: 136 KLS------------LWTDGQEPAQ--------------------QPMSYTLSSKNPVLQ 163
           KLS            LWTD ++                       +  ++ LSSKNPVL+
Sbjct: 570 KLSAKIVHNLDSRVGLWTDEKKDDNTLKQDDDNKENKSIQNVHEVEQAAFGLSSKNPVLK 629

Query: 164 NITDYLIEEASAEEEELLGKSEENTEETE--------QVDPNVLRVLDRLILYLRIVHSV 215
           NITDYLIEEASAEEEELLG S +  E           + DP +++VLDRLILYLRIVHSV
Sbjct: 630 NITDYLIEEASAEEEELLGMSGDQEEGQLGGDGDGPIERDPTLIKVLDRLILYLRIVHSV 689

Query: 216 DYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTP 275
           DYYNHCEYPNEDEMPNRCGI+H RGS P +KVT  E+++YC  F++KM++ +      + 
Sbjct: 690 DYYNHCEYPNEDEMPNRCGIMHVRGSPPTAKVTSTELSEYCRNFESKMTAFLQPIATLSQ 749

Query: 276 EELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEE 335
           EE D+LGAK  +AEVEKF+ ANTQE+S DKWLCPLSGKKFKGPDFIRKHIFNKHAEKV E
Sbjct: 750 EEFDKLGAKNAEAEVEKFVQANTQELSKDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVAE 809

Query: 336 VKKE 339
           VK E
Sbjct: 810 VKAE 813

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791253|ref|XP_396542.4| PREDICTED: serrate RNA effector molecule homolog [Apis mellifera]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/364 (62%), Positives = 270/364 (74%), Gaps = 40/364 (10%)

Query: 16  IINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRW 75
           +I+      E  PRALH+TSSIFLRNLAPTITKAEVE +CKR+ GFLRVAIADPQP+RRW
Sbjct: 450 VIDLASEDKEKEPRALHKTSSIFLRNLAPTITKAEVEAMCKRFPGFLRVAIADPQPERRW 509

Query: 76  FRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDM 135
           FRRGWV+F R V+IKEICW+LNNIRLRDCELGAIVNRDLSRR+RTV+G+TS K +V+ D+
Sbjct: 510 FRRGWVSFERQVNIKEICWSLNNIRLRDCELGAIVNRDLSRRIRTVNGITSHKQIVRHDI 569

Query: 136 KLS------------LWTDGQEPAQ--------------------QPMSYTLSSKNPVLQ 163
           KLS            LW D ++                       +  ++ LSSKNPVL+
Sbjct: 570 KLSAKIVHNLDSRVGLWNDDKKDDNTLKQDDDNKENKSIQNVHEVEQAAFGLSSKNPVLK 629

Query: 164 NITDYLIEEASAEEEELLGKSEENTEETE--------QVDPNVLRVLDRLILYLRIVHSV 215
           NITDYLIEEASAEEEELLG S +  E           + DP +++VLDRLILYLRIVHSV
Sbjct: 630 NITDYLIEEASAEEEELLGMSGDQEEGQLGGDGDGPIERDPTLIKVLDRLILYLRIVHSV 689

Query: 216 DYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTP 275
           DYYNHCEYPNEDEMPNRCGI+H RGS P +KVT  E+++YC  F++KM++ +      + 
Sbjct: 690 DYYNHCEYPNEDEMPNRCGIMHVRGSPPTAKVTSTELSEYCRNFESKMTAFLQPIATLSQ 749

Query: 276 EELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEE 335
           EE D+LGAK  +AEVEKF+ ANTQE+S DKWLCPLSGKKFKGPDFIRKHIFNKHAEKV E
Sbjct: 750 EEFDKLGAKNAEAEVEKFVQANTQELSKDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVAE 809

Query: 336 VKKE 339
           VK E
Sbjct: 810 VKAE 813

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407862|ref|XP_003488219.1| PREDICTED: serrate RNA effector molecule homolog isoform 1 [Bombus impatiens]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/364 (63%), Positives = 270/364 (74%), Gaps = 40/364 (10%)

Query: 16  IINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRW 75
           +I+      E  PRALH+TSSIFLRNLAPTITKAEVE +CKR+ GFLRVAIADPQP+RRW
Sbjct: 450 VIDLASEDKEKEPRALHKTSSIFLRNLAPTITKAEVEAMCKRFPGFLRVAIADPQPERRW 509

Query: 76  FRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDM 135
           FRRGWV+F R V+IKEICW+LNNIRLRDCELGAIVNRDLSRR+RTV+GLTS K +V+ D+
Sbjct: 510 FRRGWVSFERQVNIKEICWSLNNIRLRDCELGAIVNRDLSRRIRTVNGLTSHKQIVRHDI 569

Query: 136 KLS------------LWT-------------DGQEPAQ-------QPMSYTLSSKNPVLQ 163
           KLS            LW              D +E          +  ++ LSSKNPVL+
Sbjct: 570 KLSAKIVHNLDSRVGLWNEEKRDDNTVKQDDDNKENKSIQNVHEVEQAAFGLSSKNPVLK 629

Query: 164 NITDYLIEEASAEEEELLGKSEENTEETE--------QVDPNVLRVLDRLILYLRIVHSV 215
           NITDYLIEEASAEEEELLG S +  E           + DP +++VLDRLILYLR+VHSV
Sbjct: 630 NITDYLIEEASAEEEELLGMSGDKEEGQLGGDGDGPIERDPTLIKVLDRLILYLRVVHSV 689

Query: 216 DYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTP 275
           DYYNHCEYPNEDEMPNRCGI+H RGS P +KVT  E+++YC  F++KM++ +      + 
Sbjct: 690 DYYNHCEYPNEDEMPNRCGIMHVRGSPPTAKVTSTELSEYCRNFESKMAAFLQPIATLSQ 749

Query: 276 EELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEE 335
           EE D+LGAK  +AEVEKF+ ANTQE+S DKWLCPLSGKKFKGPDFIRKHIFNKHAEKV E
Sbjct: 750 EEFDKLGAKNAEAEVEKFVQANTQELSKDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVAE 809

Query: 336 VKKE 339
           VK E
Sbjct: 810 VKAE 813

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721924|ref|XP_003399363.1| PREDICTED: serrate RNA effector molecule homolog [Bombus terrestris]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/364 (63%), Positives = 270/364 (74%), Gaps = 40/364 (10%)

Query: 16  IINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRW 75
           +I+      E  PRALH+TSSIFLRNLAPTITKAEVE +CKR+ GFLRVAIADPQP+RRW
Sbjct: 446 VIDLASEDKEKEPRALHKTSSIFLRNLAPTITKAEVEAMCKRFPGFLRVAIADPQPERRW 505

Query: 76  FRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDM 135
           FRRGWV+F R V+IKEICW+LNNIRLRDCELGAIVNRDLSRR+RTV+GLTS K +V+ D+
Sbjct: 506 FRRGWVSFERQVNIKEICWSLNNIRLRDCELGAIVNRDLSRRIRTVNGLTSHKQIVRHDI 565

Query: 136 KLS------------LWT-------------DGQEPAQ-------QPMSYTLSSKNPVLQ 163
           KLS            LW              D +E          +  ++ LSSKNPVL+
Sbjct: 566 KLSAKIVHNLDSRVGLWNEEKRDDNTVKQDDDNKENKSIQNVHEVEQAAFGLSSKNPVLK 625

Query: 164 NITDYLIEEASAEEEELLGKSEENTEETE--------QVDPNVLRVLDRLILYLRIVHSV 215
           NITDYLIEEASAEEEELLG S +  E           + DP +++VLDRLILYLR+VHSV
Sbjct: 626 NITDYLIEEASAEEEELLGMSGDKEEGQLGGDGDGPIERDPTLIKVLDRLILYLRVVHSV 685

Query: 216 DYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTP 275
           DYYNHCEYPNEDEMPNRCGI+H RGS P +KVT  E+++YC  F++KM++ +      + 
Sbjct: 686 DYYNHCEYPNEDEMPNRCGIMHVRGSPPTAKVTSTELSEYCRNFESKMTAFLQPIATLSQ 745

Query: 276 EELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEE 335
           EE D+LGAK  +AEVEKF+ ANTQE+S DKWLCPLSGKKFKGPDFIRKHIFNKHAEKV E
Sbjct: 746 EEFDKLGAKNAEAEVEKFVQANTQELSKDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVAE 805

Query: 336 VKKE 339
           VK E
Sbjct: 806 VKAE 809

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407864|ref|XP_003488220.1| PREDICTED: serrate RNA effector molecule homolog isoform 2 [Bombus impatiens]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/364 (63%), Positives = 270/364 (74%), Gaps = 40/364 (10%)

Query: 16  IINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRW 75
           +I+      E  PRALH+TSSIFLRNLAPTITKAEVE +CKR+ GFLRVAIADPQP+RRW
Sbjct: 445 VIDLASEDKEKEPRALHKTSSIFLRNLAPTITKAEVEAMCKRFPGFLRVAIADPQPERRW 504

Query: 76  FRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDM 135
           FRRGWV+F R V+IKEICW+LNNIRLRDCELGAIVNRDLSRR+RTV+GLTS K +V+ D+
Sbjct: 505 FRRGWVSFERQVNIKEICWSLNNIRLRDCELGAIVNRDLSRRIRTVNGLTSHKQIVRHDI 564

Query: 136 KLS------------LWT-------------DGQEPAQ-------QPMSYTLSSKNPVLQ 163
           KLS            LW              D +E          +  ++ LSSKNPVL+
Sbjct: 565 KLSAKIVHNLDSRVGLWNEEKRDDNTVKQDDDNKENKSIQNVHEVEQAAFGLSSKNPVLK 624

Query: 164 NITDYLIEEASAEEEELLGKSEENTEETE--------QVDPNVLRVLDRLILYLRIVHSV 215
           NITDYLIEEASAEEEELLG S +  E           + DP +++VLDRLILYLR+VHSV
Sbjct: 625 NITDYLIEEASAEEEELLGMSGDKEEGQLGGDGDGPIERDPTLIKVLDRLILYLRVVHSV 684

Query: 216 DYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTP 275
           DYYNHCEYPNEDEMPNRCGI+H RGS P +KVT  E+++YC  F++KM++ +      + 
Sbjct: 685 DYYNHCEYPNEDEMPNRCGIMHVRGSPPTAKVTSTELSEYCRNFESKMAAFLQPIATLSQ 744

Query: 276 EELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEE 335
           EE D+LGAK  +AEVEKF+ ANTQE+S DKWLCPLSGKKFKGPDFIRKHIFNKHAEKV E
Sbjct: 745 EEFDKLGAKNAEAEVEKFVQANTQELSKDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVAE 804

Query: 336 VKKE 339
           VK E
Sbjct: 805 VKAE 808

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785389|gb|EFZ12062.1| hypothetical protein SINV_04615 [Solenopsis invicta]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/362 (63%), Positives = 270/362 (74%), Gaps = 38/362 (10%)

Query: 16  IINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRW 75
           +I+      E  PRALH+TSSIFLRNLAPTITKAEVE +CKRY GFLRVAIADPQP+RRW
Sbjct: 479 VIDLASEDREKEPRALHKTSSIFLRNLAPTITKAEVEAMCKRYPGFLRVAIADPQPERRW 538

Query: 76  FRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRDLSRRVRTVSGLTSLKPVVQFDM 135
           FRRGWV+F R V+IKEICW+LNNIRLRDCELGAIVNRDLSRR+R V+GLTS K +V+ D+
Sbjct: 539 FRRGWVSFERQVNIKEICWSLNNIRLRDCELGAIVNRDLSRRIRPVNGLTSHKQIVRHDI 598

Query: 136 KLS------------LWTD---GQEPAQQP---------------MSYTLSSKNPVLQNI 165
           KLS            LW +   G+   +Q                 ++ LSSKNPVL+NI
Sbjct: 599 KLSAKIVHNLDNKVGLWREEKKGENTMKQEEDKENKTTQSNEVEQAAFGLSSKNPVLKNI 658

Query: 166 TDYLIEEASAEEEELLGKSEENTE--------ETEQVDPNVLRVLDRLILYLRIVHSVDY 217
           TDYLIEEASAEEEELLG S E  E         + + DP +++VLDRL+LYLRIVHSVDY
Sbjct: 659 TDYLIEEASAEEEELLGMSGEQEEGQLGGDGDSSIERDPVLIKVLDRLVLYLRIVHSVDY 718

Query: 218 YNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEE 277
           YNHCEYPNEDEMPNRCGI+H RG  P +KV+  E+T+YC  F++KMS+ +      + E+
Sbjct: 719 YNHCEYPNEDEMPNRCGIMHVRGCPPTTKVSSAELTEYCRNFESKMSAFLQPVATLSDED 778

Query: 278 LDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVK 337
            D+LGAK  +AEVEKF+ ANTQE+S DKWLCPLSGKKFKGPDFIRKHIFNKH+EKV EVK
Sbjct: 779 FDKLGAKNAEAEVEKFVQANTQELSKDKWLCPLSGKKFKGPDFIRKHIFNKHSEKVAEVK 838

Query: 338 KE 339
            E
Sbjct: 839 AE 840

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
UNIPROTKB|Q5TUF1	967	Ars2 "Serrate RNA effector mol	0.554	0.194	0.580	1.1e-100
UNIPROTKB|B4KLY7	980	Ars2 "Serrate RNA effector mol	0.551	0.190	0.546	5.7e-98
UNIPROTKB|Q28WQ8	951	Ars2 "Serrate RNA effector mol	0.587	0.209	0.518	3.9e-97
UNIPROTKB|B4H732	951	Ars2 "Serrate RNA effector mol	0.587	0.209	0.518	1.7e-96
UNIPROTKB|B3MJ69	948	Ars2 "Serrate RNA effector mol	0.522	0.186	0.580	3.5e-96
UNIPROTKB|B4J497	1011	Ars2 "Serrate RNA effector mol	0.522	0.175	0.552	2.2e-95
UNIPROTKB|B3N3F7	947	Ars2 "Serrate RNA effector mol	0.592	0.212	0.506	3.3e-95
UNIPROTKB|B4NYV0	944	Ars2 "Serrate RNA effector mol	0.522	0.187	0.558	5.4e-95
UNIPROTKB|B4II37	947	Ars2 "Serrate RNA effector mol	0.522	0.186	0.546	5.2e-93
UNIPROTKB|B4QCR6	947	Ars2 "Serrate RNA effector mol	0.522	0.186	0.546	6.6e-93

UNIPROTKB|Q5TUF1 Ars2 "Serrate RNA effector molecule homolog" [Anopheles gambiae (taxid:7165)]

 Score = 566 (204.3 bits), Expect = 1.1e-100, Sum P(2) = 1.1e-100
 Identities = 112/193 (58%), Positives = 132/193 (68%)

Query:   142 DGQEPAQQPMSYTLSSKNPVLQNITDYLIXXXXXXXXXXXXXXXXXXXXTE----QVDPN 197
             +G E  Q   S+ L SKNPVLQNITDYLI                    +E    + DP 
Sbjct:   658 NGSE-VQPEESFGLQSKNPVLQNITDYLIEEASAEEEELLGLSEDSKKVSEGELIERDPQ 716

Query:   198 VLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCS 257
             ++ VLDRLILYLRIVHSVD+YNHCEYP EDEMPNRCGIIH RG    SKV   EI +Y  
Sbjct:   717 LIEVLDRLILYLRIVHSVDFYNHCEYPYEDEMPNRCGIIHARGPPSQSKVMSNEIQEYIR 776

Query:   258 TFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKG 317
             TF+ KM+S ++   +    ++ +LGAK  +AEVEKFI ANTQE++ DKWLCPLSGKKFKG
Sbjct:   777 TFEGKMASFLTRMVDIDETDMKKLGAKDAEAEVEKFITANTQELAKDKWLCPLSGKKFKG 836

Query:   318 PDFIRKHIFNKHA 330
             PDF+RKHIFNKHA
Sbjct:   837 PDFVRKHIFNKHA 849

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=ISS

GO:0031053 "primary miRNA processing" evidence=ISS

UNIPROTKB|B4KLY7 Ars2 "Serrate RNA effector molecule homolog" [Drosophila mojavensis (taxid:7230)]

 Score = 544 (196.6 bits), Expect = 5.7e-98, Sum P(2) = 5.7e-98
 Identities = 105/192 (54%), Positives = 130/192 (67%)

Query:   141 TDGQEPAQQPMSYTLSSKNPVLQNITDYLIXXXXXXXXXXXXXXXXXXXXT-EQV--DPN 197
             T+G   +  P SY  +SKNPVLQNITDYLI                      E +  D +
Sbjct:   684 TNGSGASSSP-SYGFNSKNPVLQNITDYLIEEASAEEEELLGLAGDNKDGDGEPIERDES 742

Query:   198 VLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCS 257
             ++ VLDRL+LYLRIVHSVDYYNHCEYP EDEMPNRCGIIH RG AP  +VT  ++ +Y  
Sbjct:   743 LISVLDRLVLYLRIVHSVDYYNHCEYPYEDEMPNRCGIIHARGPAPM-RVTSNDVQEYIK 801

Query:   258 TFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKG 317
              +  K+   ++   + + EE+ +LGAK  + EVEKF+ ANTQE++ DKWLCPLSGKKFKG
Sbjct:   802 AYDGKLQQFLTKTVQLSDEEIKELGAKNPETEVEKFVQANTQELAKDKWLCPLSGKKFKG 861

Query:   318 PDFIRKHIFNKH 329
             P+FIRKHIFNKH
Sbjct:   862 PEFIRKHIFNKH 873

GO:0005654 "nucleoplasm" evidence=ISS

GO:0016246 "RNA interference" evidence=ISS

GO:0031053 "primary miRNA processing" evidence=ISS

UNIPROTKB|Q28WQ8 Ars2 "Serrate RNA effector molecule homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 545 (196.9 bits), Expect = 3.9e-97, Sum P(2) = 3.9e-97
 Identities = 112/216 (51%), Positives = 136/216 (62%)

Query:   130 VVQFDMKLSLWTDGQ----EPAQQP---------MSYTLSSKNPVLQNITDYLIXXXXXX 176
             V+  D K  LW++G      PA             SY  +SKNPVLQNITDYLI      
Sbjct:   630 VMNLDEKFKLWSEGPLSKPSPASDSEATAANGSGSSYGFNSKNPVLQNITDYLIEEASAE 689

Query:   177 XXXXXXXXXXXXXXT-EQV--DPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRC 233
                             E +  D  +L VLDRL+LYLRIVHSVDYYNHCEYP EDEMPNRC
Sbjct:   690 EEELLGLSGDRKDGEGEPIERDEQLLSVLDRLVLYLRIVHSVDYYNHCEYPYEDEMPNRC 749

Query:   234 GIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKF 293
             GIIH RG AP S+VT  E+ +Y  +++ K+   ++     + +++  LGAK  D EVEKF
Sbjct:   750 GIIHARGPAP-SRVTSNELNEYIKSYEGKLLQFLTKTALLSEDQIKDLGAKNADTEVEKF 808

Query:   294 IAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKH 329
             + ANTQE++ DKWLCPLSGKKFKGP+FIRKHIFNKH
Sbjct:   809 VQANTQELAKDKWLCPLSGKKFKGPEFIRKHIFNKH 844

GO:0005654 "nucleoplasm" evidence=ISS

GO:0016246 "RNA interference" evidence=ISS

GO:0031053 "primary miRNA processing" evidence=ISS

UNIPROTKB|B4H732 Ars2 "Serrate RNA effector molecule homolog" [Drosophila persimilis (taxid:7234)]

 Score = 545 (196.9 bits), Expect = 1.7e-96, Sum P(2) = 1.7e-96
 Identities = 112/216 (51%), Positives = 136/216 (62%)

Query:   130 VVQFDMKLSLWTDGQ----EPAQQP---------MSYTLSSKNPVLQNITDYLIXXXXXX 176
             V+  D K  LW++G      PA             SY  +SKNPVLQNITDYLI      
Sbjct:   630 VMNLDEKFKLWSEGPLSKPSPASDSEATAANGSGSSYGFNSKNPVLQNITDYLIEEASAE 689

Query:   177 XXXXXXXXXXXXXXT-EQV--DPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRC 233
                             E +  D  +L VLDRL+LYLRIVHSVDYYNHCEYP EDEMPNRC
Sbjct:   690 EEELLGLSGDRKDGEGEPIERDEQLLSVLDRLVLYLRIVHSVDYYNHCEYPYEDEMPNRC 749

Query:   234 GIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKF 293
             GIIH RG AP S+VT  E+ +Y  +++ K+   ++     + +++  LGAK  D EVEKF
Sbjct:   750 GIIHARGPAP-SRVTSNELNEYIKSYEGKLLQFLTKTALLSEDQIKDLGAKNADTEVEKF 808

Query:   294 IAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKH 329
             + ANTQE++ DKWLCPLSGKKFKGP+FIRKHIFNKH
Sbjct:   809 VQANTQELAKDKWLCPLSGKKFKGPEFIRKHIFNKH 844

GO:0005654 "nucleoplasm" evidence=ISS

GO:0016246 "RNA interference" evidence=ISS

GO:0031053 "primary miRNA processing" evidence=ISS

UNIPROTKB|B3MJ69 Ars2 "Serrate RNA effector molecule homolog" [Drosophila ananassae (taxid:7217)]

 Score = 541 (195.5 bits), Expect = 3.5e-96, Sum P(2) = 3.5e-96
 Identities = 105/181 (58%), Positives = 126/181 (69%)

Query:   152 SYTLSSKNPVLQNITDYLIXXXXXXXXXXXXXXXXXXXXT-EQV--DPNVLRVLDRLILY 208
             +Y + SKNPVLQNITDYLI                      E +  D ++L VLDRL+LY
Sbjct:   661 TYGIKSKNPVLQNITDYLIEEASAEEEELLGLTGENKDAEGEPIERDEHLLAVLDRLVLY 720

Query:   209 LRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVS 268
             LRIVHSVDYYNHCEYP EDEMPNRCGIIH RG AP S+VT  +I +Y  T+++K+   ++
Sbjct:   721 LRIVHSVDYYNHCEYPYEDEMPNRCGIIHARGPAP-SRVTSNDIHEYVKTYESKLQQFLT 779

Query:   269 SPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNK 328
                  + EE   LGAK  + EVEKF+ ANTQE++ DKWLCPLSGKKFKGP+FIRKHIFNK
Sbjct:   780 KTALLSDEETKDLGAKDAETEVEKFVQANTQELAKDKWLCPLSGKKFKGPEFIRKHIFNK 839

Query:   329 H 329
             H
Sbjct:   840 H 840

GO:0005654 "nucleoplasm" evidence=ISS

GO:0016246 "RNA interference" evidence=ISS

GO:0031053 "primary miRNA processing" evidence=ISS

UNIPROTKB|B4J497 Ars2 "Serrate RNA effector molecule homolog" [Drosophila grimshawi (taxid:7222)]

 Score = 532 (192.3 bits), Expect = 2.2e-95, Sum P(2) = 2.2e-95
 Identities = 100/181 (55%), Positives = 126/181 (69%)

Query:   152 SYTLSSKNPVLQNITDYLIXXXXXXXXXXXXXXXXXXXXT-EQV--DPNVLRVLDRLILY 208
             SY  +SKNPVLQNITDYLI                      E +  D  +++VLDRL+LY
Sbjct:   724 SYGFNSKNPVLQNITDYLIEEASAEEEELLGLAGDSKDGEGEPIERDEPLIQVLDRLVLY 783

Query:   209 LRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVS 268
             LR+VHSVDYYNHCEYP EDEMPNRCGIIH RG AP  +VT  ++ +Y  +++ K+   ++
Sbjct:   784 LRVVHSVDYYNHCEYPYEDEMPNRCGIIHARGPAPM-RVTSNDVQEYIKSYEGKLQQFLA 842

Query:   269 SPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNK 328
                + + E + +LGAK  + EVEKF+ ANTQE++ DKWLCPLSGKKFKGP+FIRKHIFNK
Sbjct:   843 KTVQLSDENIKELGAKNPEKEVEKFVQANTQELAKDKWLCPLSGKKFKGPEFIRKHIFNK 902

Query:   329 H 329
             H
Sbjct:   903 H 903

GO:0005654 "nucleoplasm" evidence=ISS

GO:0016246 "RNA interference" evidence=ISS

GO:0031053 "primary miRNA processing" evidence=ISS

UNIPROTKB|B3N3F7 Ars2 "Serrate RNA effector molecule homolog" [Drosophila erecta (taxid:7220)]

 Score = 536 (193.7 bits), Expect = 3.3e-95, Sum P(2) = 3.3e-95
 Identities = 110/217 (50%), Positives = 136/217 (62%)

Query:   128 KPVVQFDMKLSLW----TDGQEPAQQPMS--------YTLSSKNPVLQNITDYLIXXXXX 175
             K  +  D +  LW    TD   P++   S        Y  +SKNPVLQNITDYLI     
Sbjct:   624 KIALNLDERFRLWAEVPTDDSHPSRADESTENGSGSTYGFNSKNPVLQNITDYLIEEASA 683

Query:   176 XXXXXXXXXXXXXXXT-EQV--DPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNR 232
                              E +  D  ++ VLDRL+LYLRIVHSVDYYNHCEYP EDEMPNR
Sbjct:   684 EEEELLGLTGENKDTDGEPIERDEQLISVLDRLVLYLRIVHSVDYYNHCEYPYEDEMPNR 743

Query:   233 CGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEK 292
             CGIIH RG AP  +VT  ++ +Y  T+++K+   ++     + EE+  LGAK  + EVEK
Sbjct:   744 CGIIHARGPAPV-RVTNNDVQEYIKTYESKLQQFLTKTVLLSDEEIKDLGAKDPETEVEK 802

Query:   293 FIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKH 329
             F+ ANTQE++ DKWLCPLSGKKFKGP+FIRKHIFNKH
Sbjct:   803 FVQANTQELAKDKWLCPLSGKKFKGPEFIRKHIFNKH 839

GO:0005654 "nucleoplasm" evidence=ISS

GO:0016246 "RNA interference" evidence=ISS

GO:0031053 "primary miRNA processing" evidence=ISS

UNIPROTKB|B4NYV0 Ars2 "Serrate RNA effector molecule homolog" [Drosophila yakuba (taxid:7245)]

 Score = 534 (193.0 bits), Expect = 5.4e-95, Sum P(2) = 5.4e-95
 Identities = 101/181 (55%), Positives = 124/181 (68%)

Query:   152 SYTLSSKNPVLQNITDYLIXXXXXXXXXXXXXXXXXXXXTEQV---DPNVLRVLDRLILY 208
             +Y  +SKNPVLQNITDYLI                      +    D  ++ VLDRL+LY
Sbjct:   657 TYGFNSKNPVLQNITDYLIEEASAEEDELLGLTGENKDTEGEAIERDEQLISVLDRLVLY 716

Query:   209 LRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVS 268
             LRIVHSVDYYNHCEYP EDEMPNRCGIIH RG AP  +VT  ++ +Y  T+++K+   ++
Sbjct:   717 LRIVHSVDYYNHCEYPYEDEMPNRCGIIHARGPAPV-RVTNNDVQEYIKTYESKLQQFLT 775

Query:   269 SPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNK 328
                  + EE+  LGAK  + EVEKF+ ANTQE++ DKWLCPLSGKKFKGP+FIRKHIFNK
Sbjct:   776 KTVLLSDEEIKDLGAKDAETEVEKFVQANTQELAKDKWLCPLSGKKFKGPEFIRKHIFNK 835

Query:   329 H 329
             H
Sbjct:   836 H 836

GO:0005654 "nucleoplasm" evidence=ISS

GO:0016246 "RNA interference" evidence=ISS

GO:0031053 "primary miRNA processing" evidence=ISS

UNIPROTKB|B4II37 Ars2 "Serrate RNA effector molecule homolog" [Drosophila sechellia (taxid:7238)]

 Score = 520 (188.1 bits), Expect = 5.2e-93, Sum P(2) = 5.2e-93
 Identities = 99/181 (54%), Positives = 122/181 (67%)

Query:   152 SYTLSSKNPVLQNITDYLIXXXXXXXXXXXXXXXXXXXXT-EQV--DPNVLRVLDRLILY 208
             +Y  +S+NPVLQNITDYLI                      E +  D  ++ VLDRL+LY
Sbjct:   660 TYGFNSQNPVLQNITDYLIEEASAEEEELLGLTGENKDTEGEPIERDEQLISVLDRLVLY 719

Query:   209 LRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVS 268
             LRIVHSVDYYNHCEYP EDEMPNRCGIIH RG  P  +VT  ++ +Y   ++ K+   ++
Sbjct:   720 LRIVHSVDYYNHCEYPYEDEMPNRCGIIHARGPPPV-RVTNNDVQEYIKMYETKLQQFLT 778

Query:   269 SPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNK 328
                  + EE+  LGAK  + EVEKF+ ANTQE++ DKWLCPLSGKKFKGP+FIRKHIFNK
Sbjct:   779 KTVPLSDEEIKNLGAKDAETEVEKFVQANTQELAKDKWLCPLSGKKFKGPEFIRKHIFNK 838

Query:   329 H 329
             H
Sbjct:   839 H 839

GO:0005654 "nucleoplasm" evidence=ISS

GO:0016246 "RNA interference" evidence=ISS

GO:0031053 "primary miRNA processing" evidence=ISS

UNIPROTKB|B4QCR6 Ars2 "Serrate RNA effector molecule homolog" [Drosophila simulans (taxid:7240)]

 Score = 520 (188.1 bits), Expect = 6.6e-93, Sum P(2) = 6.6e-93
 Identities = 99/181 (54%), Positives = 122/181 (67%)

Query:   152 SYTLSSKNPVLQNITDYLIXXXXXXXXXXXXXXXXXXXXT-EQV--DPNVLRVLDRLILY 208
             +Y  +S+NPVLQNITDYLI                      E +  D  ++ VLDRL+LY
Sbjct:   660 TYGFNSQNPVLQNITDYLIEEASAEEEELLGLTGENKDTEGEPIERDEQLISVLDRLVLY 719

Query:   209 LRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVS 268
             LRIVHSVDYYNHCEYP EDEMPNRCGIIH RG  P  +VT  ++ +Y   ++ K+   ++
Sbjct:   720 LRIVHSVDYYNHCEYPYEDEMPNRCGIIHARGPPPV-RVTNNDVQEYIKMYETKLQQFLT 778

Query:   269 SPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNK 328
                  + EE+  LGAK  + EVEKF+ ANTQE++ DKWLCPLSGKKFKGP+FIRKHIFNK
Sbjct:   779 KTVPLSDEEIKNLGAKDAETEVEKFVQANTQELAKDKWLCPLSGKKFKGPEFIRKHIFNK 838

Query:   329 H 329
             H
Sbjct:   839 H 839

GO:0005654 "nucleoplasm" evidence=ISS

GO:0016246 "RNA interference" evidence=ISS

GO:0031053 "primary miRNA processing" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q66I22	SRRT_DANRE	No assigned EC number	0.5647	0.9262	0.3504	yes	N/A
Q99MR6	SRRT_MOUSE	No assigned EC number	0.5671	0.9144	0.3542	yes	N/A
Q9BXP5	SRRT_HUMAN	No assigned EC number	0.5761	0.9144	0.3538	yes	N/A
Q60436	SRRT_CRIGR	No assigned EC number	0.56	0.4837	0.5359	yes	N/A
A4IFB1	SRRT_BOVIN	No assigned EC number	0.5731	0.9144	0.3538	yes	N/A
Q5R539	SRRT_PONAB	No assigned EC number	0.5761	0.9144	0.3559	yes	N/A
Q9V9K7	SRRT_DROME	No assigned EC number	0.6047	0.9174	0.3297	yes	N/A
Q5TUF1	SRRT_ANOGA	No assigned EC number	0.6539	0.9174	0.3216	yes	N/A
Q28WQ8	SRRT_DROPS	No assigned EC number	0.6209	0.9144	0.3259	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	339
pfam04959	211	pfam04959, ARS2, Arsenite-resistance protein 2	5e-55
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	2e-04
smart00360	73	smart00360, RRM, RNA recognition motif	0.004

>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2

 Score =  178 bits (453), Expect = 5e-55
 Identities = 64/111 (57%), Positives = 85/111 (76%)

Query: 229 MPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDA 288
           MPNRCGIIH RG  P +++T  E+ ++  TF+ K+  L+S  +  + EE  ++G K  + 
Sbjct: 1   MPNRCGIIHVRGPPPPNRITHGEVNEWIKTFEEKLGPLLSVKETLSEEEAKKMGRKDPEQ 60

Query: 289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE 339
           EVEKF+ ANTQE++ DKWLCPLSGKKFKGP+F+RKHIFNKH +KVEEV+KE
Sbjct: 61  EVEKFVQANTQELAKDKWLCPLSGKKFKGPEFVRKHIFNKHGDKVEEVRKE 111

Arsenite is a carcinogenic compound which can act as a co-mutagen by inhibiting DNA repair. Arsenite-resistance protein 2 is thought to play a role in arsenite resistance. Length = 211

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 37  IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
           +F+ NL P  T+ ++  L  ++     V I     D +     +V F    D ++    L
Sbjct: 1   LFVGNLPPDTTEEDLRELFSKFGEIESVRIVRD-KDGKSKGFAFVEFESPEDAEKALEAL 59

Query: 97  NNIRLRDCEL 106
           N   L   +L
Sbjct: 60  NGKELDGRKL 69

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 15/71 (21%), Positives = 29/71 (40%)

Query: 36  SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWN 95
           ++F+ NL P  T+ E+  L  ++     V +   +   +     +V F  + D ++    
Sbjct: 1   TLFVGNLPPDTTEEELRELFSKFGKVESVRLVRDKETGKSKGFAFVEFESEEDAEKALEA 60

Query: 96  LNNIRLRDCEL 106
           LN   L    L
Sbjct: 61  LNGKELDGRPL 71

Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	339
KOG2295|consensus	648		100.0
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	100.0
PF13821	55	DUF4187: Domain of unknown function (DUF4187)	99.52
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	98.58
KOG1994|consensus	268		98.2
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	98.13
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	97.83
smart00362	72	RRM_2 RNA recognition motif.	97.74
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	97.72
smart00360	71	RRM RNA recognition motif.	97.33
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	97.02
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	96.95
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	96.85
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	96.52
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.4
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	96.39
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	96.29
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	96.27
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	96.21
PLN03120	260	nucleic acid binding protein; Provisional	96.13
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	96.1
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	96.07
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.0
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	95.96
COG0724	306	RNA-binding proteins (RRM domain) [General functio	95.68
KOG0114|consensus	124		95.64
KOG3152|consensus	278		95.57
PLN03121	243	nucleic acid binding protein; Provisional	95.56
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	95.42
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	95.28
PHA00616	44	hypothetical protein	95.08
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	95.07
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	95.07
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	94.31
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	94.2
KOG0117|consensus	506		93.77
KOG1457|consensus	284		93.69
smart00355	26	ZnF_C2H2 zinc finger.	93.33
smart00361	70	RRM_1 RNA recognition motif.	93.24
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.16
KOG0117|consensus	506		92.98
KOG0108|consensus	435		92.57
KOG1457|consensus	284		92.51
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.46
KOG0127|consensus	678		92.36
PF03467	176	Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120	92.27
PLN03213	759	repressor of silencing 3; Provisional	92.07
KOG4206|consensus	221		91.98
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	91.9
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	91.55
KOG0122|consensus	270		91.26
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	91.03
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	90.96
KOG4212|consensus	608		89.52
KOG0121|consensus	153		88.47
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	88.04
KOG4206|consensus	221		87.83
KOG0116|consensus	419		87.52
KOG0533|consensus	243		87.24
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	87.03
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	86.23
PHA02768	55	hypothetical protein; Provisional	85.71
KOG0107|consensus	195		85.48
KOG3993|consensus	500		84.89
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	84.53
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	82.68
KOG4207|consensus	256		82.47
KOG0127|consensus	678		81.7

>KOG2295|consensus

Probab=100.00  E-value=7.7e-73  Score=565.83  Aligned_cols=304  Identities=45%  Similarity=0.747  Sum_probs=279.8

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIV  110 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~~v  110 (339)
                      +|+|++||+++|+|+||+++|+.+|+++|||+++|||++++.|+|+|+|||+|+.++||++|||+||+++++.+.+++.+
T Consensus       228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~se~e  307 (648)
T KOG2295|consen  228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLSESE  307 (648)
T ss_pred             hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccccccc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccCcccchhhhhh-hhhh--------hccccCCCCCCCCcccccCCCCccccchhhhhhhhhchhHHhhh
Q psy4687         111 NRDLSRRVRTVSGLTSLKPVVQF-DMKL--------SLWTDGQEPAQQPMSYTLSSKNPVLQNITDYLIEEASAEEEELL  181 (339)
Q Consensus       111 ~r~~~~~~r~~~~it~~~~rl~~-Dl~~--------~L~~~~~~~~~~~~~~~~~~~np~~~~i~d~liee~s~eeeell  181 (339)
                      |+++.+|+|.+||||.|++++.+ --++        .||...  ++.++....+.++||++++|++++++|+|++|++++
T Consensus       308 n~~i~rrvr~~~Gia~~keiasn~a~k~~~lldk~irl~~~a--~~t~al~tkl~s~n~i~kni~d~l~te~S~eE~e~~  385 (648)
T KOG2295|consen  308 NPDITRRVRPINGIAKHKEIASNAAQKLKNLLDKLIRLIDRA--SQTQALVTKLSSPNPIAKNIEDRLKTEASMEEDELL  385 (648)
T ss_pred             ccCccceeccCCchhhHHHHHHHHHHhhhHHHhhhHHHhhcc--cccccchhhccCCCHHHHHHHHHhhhhcchhhhhhc
Confidence            99999999999999999999987 2222        666543  233344456889999999999999999999999999


Q ss_pred             cCCCCCcc---cccccChhHHHHHHHHHHHHHHhcceeeeccccCCCcccccccCCCCccCCCCCCCCCChhhHHHHHHH
Q psy4687         182 GKSEENTE---ETEQVDPNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCST  258 (339)
Q Consensus       182 g~~~~~~~---~~~e~d~~l~~~LD~~i~YLR~vh~~cyyc~~ey~~~~el~~~Cp~~H~R~~~p~~~~t~~e~~~W~~~  258 (339)
                      |+++.+.-   .+.++|...++.||+|+.|||+||++|||..++|.+++.|+++||.+|+|++   +.++..++.+|.+.
T Consensus       386 gssg~e~p~eg~~~er~d~~lk~LDll~~YLr~VhslDfyn~~ey~~e~~mpnrcgl~hvR~~---~~vs~~ev~e~es~  462 (648)
T KOG2295|consen  386 GSSGPEVPIEGLTSERDDIRLKLLDLLAEYLRIVHSLDFYNSKEYESEDAMPNRCGLIHVRGK---GFVSSKEVGEEESI  462 (648)
T ss_pred             CCCCCcCccccCccccchhHHHHHHHHHHHHHHHHhcccccccccchhhhcccccCceeeccc---CCCCcccchhHHHH
Confidence            98874421   4677888999999999999999999999999999999999999999999998   35666778899999


Q ss_pred             HHHhHHhccCCCCCCChHHHHhhcCcccHHHHHHHHHhhhhhccCCeecCCC--CcccccChhhHHhhhhhcchHHHHHh
Q psy4687         259 FQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPL--SGKKFKGPDFIRKHIFNKHAEKVEEV  336 (339)
Q Consensus       259 ~e~k~~~~l~~~~~~~~~d~~klG~k~~eeevek~v~~~~~e~~e~K~rC~~--C~KlFk~~eFV~KHI~nKH~e~v~~v  336 (339)
                      |+++++..|.....+.+++++++|.+++|+||++||++||++++++||+|++  |+|||||||||+|||++||.|||+++
T Consensus       463 f~s~le~~l~~~~~lee~eakkkg~k~~e~eve~~v~s~t~e~~kdKy~C~lsgc~KlF~gpEFvrKHi~~KH~d~leei  542 (648)
T KOG2295|consen  463 FLSDLENNLACLLELEEEEAKKKGAKDVEDEVENFVDSNTMELDKDKYLCPLSGCAKLFKGPEFVRKHINKKHKDKLEEI  542 (648)
T ss_pred             HHHHhhhcccccccchHHHHHHhcccCHHHHHHHHHHHHHHHhhcccccCCCcchHhhccCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999975  77999999999999999999999999


Q ss_pred             hcC
Q psy4687         337 KKE  339 (339)
Q Consensus       337 ~~e  339 (339)
                      |+|
T Consensus       543 rke  545 (648)
T KOG2295|consen  543 RKE  545 (648)
T ss_pred             HHH
Confidence            975

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=100.00  E-value=1.4e-37  Score=286.61  Aligned_cols=111  Identities=57%  Similarity=1.031  Sum_probs=77.2

Q ss_pred             ccccCCCCccCCCCCCCCCChhhHHHHHHHHHHhHHhccCCCCCCChHHHHhhcCcccHHHHHHHHHhhhhhccCCeecC
Q psy4687         229 MPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQEPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLC  308 (339)
Q Consensus       229 l~~~Cp~~H~R~~~p~~~~t~~e~~~W~~~~e~k~~~~l~~~~~~~~~d~~klG~k~~eeevek~v~~~~~e~~e~K~rC  308 (339)
                      |+++||++|||+++|++.+|+.++.+|+++||+||+++|++...++++++++||++++|+||++||+++|++++++||||
T Consensus         1 mp~rcGi~HvRg~~p~~~~~~~e~~~w~k~~e~kl~~~L~~~~~l~~~~~~klG~k~~e~eve~~v~~~~~e~~~~K~~C   80 (214)
T PF04959_consen    1 MPNRCGIIHVRGPPPSNRVTSDEVSEWVKTFEEKLQQLLEPRETLSEEELKKLGGKDPEEEVEKFVQKNTKEEDEDKWRC   80 (214)
T ss_dssp             -------------------------HHHHHHHHHHHHHHHS--HHHHHH-HHHHHHHHHHHHGGGEEEEE-SSSSEEEEE
T ss_pred             CcccccccccccccccCccCHHHHHHHHHHHHHHHHHHcCCcCcCChHHHHHHccCcHHHHHHHHHHHHHHHHcCCEECC
Confidence            78999999999999998999999999999999999999999988889999999999999999999999999999999999


Q ss_pred             CCCcccccChhhHHhhhhhcchHHHHHhhcC
Q psy4687         309 PLSGKKFKGPDFIRKHIFNKHAEKVEEVKKE  339 (339)
Q Consensus       309 ~~C~KlFk~~eFV~KHI~nKH~e~v~~v~~e  339 (339)
                      ++|+|||||+|||+|||+|||+|+|+++++|
T Consensus        81 ~lc~KlFkg~eFV~KHI~nKH~e~ve~~~~e  111 (214)
T PF04959_consen   81 PLCGKLFKGPEFVRKHIFNKHPEKVEEVKKE  111 (214)
T ss_dssp             -SSS-EESSHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             CCCCcccCChHHHHHHHhhcCHHHHHHHHHH
Confidence            9999999999999999999999999999875

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PF13821 DUF4187: Domain of unknown function (DUF4187)

Probab=99.52  E-value=4.5e-15  Score=110.12  Aligned_cols=41  Identities=24%  Similarity=0.454  Sum_probs=38.9

Q ss_pred             hHHHHHHHHHHHHHHhcceeeeccccCCCcccccccCCCCc
Q psy4687         197 NVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIH  237 (339)
Q Consensus       197 ~l~~~LD~~i~YLR~vh~~cyyc~~ey~~~~el~~~Cp~~H  237 (339)
                      .+.++|++++.|||.+|+||||||++|+|.+||.++|||.+
T Consensus        11 ~~~e~L~~l~~YLR~~~~YC~~Cg~~Y~d~~dL~~~CPG~t   51 (55)
T PF13821_consen   11 SPEERLDKLLSYLREEHNYCFWCGTKYDDEEDLERNCPGPT   51 (55)
T ss_pred             CHHHHHHHHHHHHHhhCceeeeeCCccCCHHHHHhCCCCCC
Confidence            45799999999999999999999999999999999999976

>PF00076 RRM_1: RNA recognition motif

Probab=98.58  E-value=1.4e-07  Score=69.48  Aligned_cols=69  Identities=14%  Similarity=0.346  Sum_probs=62.1

Q ss_pred             EEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        37 lfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      |||++||++++.++|.+++++++....+.+..- +.++..+.|||.|....+++.|+..+++..+.+..+
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i   69 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI   69 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence            799999999999999999999999988888743 777899999999999999999999999988877543

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG1994|consensus

Probab=98.20  E-value=7.2e-07  Score=83.14  Aligned_cols=45  Identities=16%  Similarity=0.378  Sum_probs=40.1

Q ss_pred             hhHHHHHHHHHHHHHHhcceeeeccccCCCcccccccCCCCccCC
Q psy4687         196 PNVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRG  240 (339)
Q Consensus       196 ~~l~~~LD~~i~YLR~vh~~cyyc~~ey~~~~el~~~Cp~~H~R~  240 (339)
                      +.+.+.|-.+.-|||.-|.||||||+.|.++++|..+|||..-|.
T Consensus       222 ei~Ee~lt~in~~LR~eh~YC~fCG~~y~~~edl~ehCPGvnedd  266 (268)
T KOG1994|consen  222 EIIEERLTKINIFLRSEHYYCFFCGIKYKDEEDLYEHCPGVNEDD  266 (268)
T ss_pred             HHHHHHHHHHHHHHhccceEEEEeccccCCHHHHHHhCCCCCccc
Confidence            345689999999999999999999999999999999999875543

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=98.13  E-value=2.3e-05  Score=68.46  Aligned_cols=83  Identities=10%  Similarity=0.117  Sum_probs=67.0

Q ss_pred             CCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          26 PPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        26 ~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      --...-+.+++|||.+||++++-++|.++|++++-...+.+.-.....+.-..|||+|....++..|+..||+..|.+..
T Consensus        26 ~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~  105 (144)
T PLN03134         26 MLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH  105 (144)
T ss_pred             ccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence            34455677789999999999999999999999999888888522222233468999999999999999999999888866


Q ss_pred             ccc
Q psy4687         106 LGA  108 (339)
Q Consensus       106 l~~  108 (339)
                      +..
T Consensus       106 l~V  108 (144)
T PLN03134        106 IRV  108 (144)
T ss_pred             EEE
Confidence            553

>PF14259 RRM_6: RNA recognition motif (a

Probab=97.83  E-value=4.7e-05  Score=56.83  Aligned_cols=66  Identities=21%  Similarity=0.356  Sum_probs=52.1

Q ss_pred             EEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        37 lfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      |+|++||++++.++|.+++..++-...+.+. .....++.+.|||.|.+..++..++..+++..+++
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~-~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g   66 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLI-KNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG   66 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEEEEEE-ESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcceEEEE-eeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence            7999999999999999999999546666665 22335789999999999999999888777676665

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>smart00362 RRM_2 RNA recognition motif

Probab=97.74  E-value=0.00012  Score=52.45  Aligned_cols=67  Identities=21%  Similarity=0.367  Sum_probs=55.5

Q ss_pred             eEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        36 slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      +|+|++||++++.++|.+++++++...++.+....  ......|+|.|....++..++..+++..+.+.
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~   67 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGR   67 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCE
Confidence            48999999999999999999999998887765322  34557899999999999988888888766653

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=97.72  E-value=0.00017  Score=52.02  Aligned_cols=69  Identities=22%  Similarity=0.353  Sum_probs=56.9

Q ss_pred             eEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        36 slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      +|+|+++|++++.++|.++++.+++...+.+.- .+..+....|||.|....++..++..+++..+.+..
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~-~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~   69 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVR-DKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRP   69 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEee-CCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence            589999999999999999999998888877762 222256679999999999999998888887666544

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>smart00360 RRM RNA recognition motif

Probab=97.33  E-value=0.00068  Score=48.22  Aligned_cols=65  Identities=20%  Similarity=0.309  Sum_probs=54.0

Q ss_pred             eeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          39 LRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        39 Ik~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      |++||+.++.++|.+++++++....+.+.......+....|+|.|....++..++..+++..+.+
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~   65 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG   65 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence            57899999999999999999988888887544345666799999999999998888888766654

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=97.02  E-value=0.0037  Score=62.17  Aligned_cols=75  Identities=21%  Similarity=0.293  Sum_probs=61.8

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      -..++|||.+||++++.++|.++++.++-+..+-| -|+...+ --..|||.|....++..|+..||++.+.+-.+.
T Consensus       105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~-srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~  180 (346)
T TIGR01659       105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGY-SFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK  180 (346)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCc-cCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence            35679999999999999999999999998888876 4555433 235799999999999999999999888775543

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=96.95  E-value=0.0023  Score=61.92  Aligned_cols=73  Identities=19%  Similarity=0.339  Sum_probs=61.1

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+.|||++||++++-++|.+++++++-...+.|- |+.. .+--..|||.|....++..|+..||+..+.+-.+.
T Consensus         3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~-g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~   76 (352)
T TIGR01661         3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVT-GQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIK   76 (352)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCC-CccceEEEEEECcHHHHHHHHhhcccEEECCeeEE
Confidence            6789999999999999999999999988888874 3332 23446899999999999999999999888876654

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=96.85  E-value=0.0048  Score=59.67  Aligned_cols=73  Identities=21%  Similarity=0.249  Sum_probs=59.6

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ++.+|||++||+.++.++|.++++.++...++-+- |+... +---.|+|.|+...++..|+..||+..+.+-.+
T Consensus       268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~-~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i  341 (352)
T TIGR01661       268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTN-QCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVL  341 (352)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCC-CccceEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence            34479999999999999999999999999998874 44322 222468999999999999999999988877444

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=96.52  E-value=0.0077  Score=59.92  Aligned_cols=71  Identities=20%  Similarity=0.330  Sum_probs=57.3

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      +.+.|||.+||++++.++|.+++++++....+.+- |.... +--..|+|.|....++.+|+..||+..+.+.
T Consensus       192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg-~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~  263 (346)
T TIGR01659       192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTG-TPRGVAFVRFNKREEAQEAISALNNVIPEGG  263 (346)
T ss_pred             ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCC-ccceEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence            45679999999999999999999999998877763 32211 2225899999999999999999999877653

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.40  E-value=0.0015  Score=39.20  Aligned_cols=23  Identities=30%  Similarity=0.840  Sum_probs=21.7

Q ss_pred             ecCCCCcccccChhhHHhhhhhcc
Q psy4687         306 WLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       306 ~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      |.|+.|+|.|..+.-+.+|++. |
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~-H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR-H   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH-H
T ss_pred             CCCCCCCCccCCHHHHHHHHhH-C
Confidence            7899999999999999999987 5

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=96.39  E-value=0.01  Score=60.58  Aligned_cols=73  Identities=12%  Similarity=0.162  Sum_probs=60.3

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +..|||.+||..++-++|.++++.++.+..+-| -|+... +....|+|.|....++..|+..||+..+.+..|.
T Consensus       295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g-~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~  368 (509)
T TIGR01642       295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATG-LSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLH  368 (509)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC-CcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence            468999999999999999999999999888776 344322 2345799999999888899999999988876654

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=96.29  E-value=0.011  Score=59.61  Aligned_cols=73  Identities=21%  Similarity=0.323  Sum_probs=59.9

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +..|||.+||++++.++|.++++.++....+.|. |+... +--..|+|.|....++..|+..||+..|.+-.+.
T Consensus       186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g-~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~  259 (457)
T TIGR01622       186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETG-RSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIK  259 (457)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-ccceEEEEEECCHHHHHHHHHhcCCcEECCEEEE
Confidence            6789999999999999999999999998888774 44321 2224799999999999999999999888775543

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=96.27  E-value=0.025  Score=60.01  Aligned_cols=98  Identities=19%  Similarity=0.221  Sum_probs=70.1

Q ss_pred             hhHHHhhhccCCc------cCCCCCCCCCCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCce
Q psy4687           4 LLNLMMLNSYNNI------INGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWF   76 (339)
Q Consensus         4 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~   76 (339)
                      +..|+-+|.|.-.      .+|+|...-.. .....++.|||.+||++++-++|.++|.+++-...+-| -|  ...+--
T Consensus        23 ~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~-~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D--~sG~sR   99 (578)
T TIGR01648        23 LKALLERTGYTLVQENGQRKYGGPPPGWSG-VQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD--FSGQNR   99 (578)
T ss_pred             HHHHHHhhCccccccCCcccCCCCCCcccC-CCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC--CCCCcc
Confidence            5566667777532      34444333111 12346799999999999999999999999987666655 33  222334


Q ss_pred             EEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          77 RRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        77 R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      ..|+|+|....++..|+..||+..++..
T Consensus       100 GfaFV~F~~~e~A~~Ai~~lng~~i~~G  127 (578)
T TIGR01648       100 GYAFVTFCGKEEAKEAVKLLNNYEIRPG  127 (578)
T ss_pred             ceEEEEeCCHHHHHHHHHHcCCCeecCC
Confidence            5899999999999999999998888643

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=96.21  E-value=0.021  Score=58.75  Aligned_cols=72  Identities=14%  Similarity=0.239  Sum_probs=58.0

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCC--eeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSG--FLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~G--F~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      ...+..|||++||++++-++|.++++++++  +..+-+- |.... -...|.|.|....++.+|+..||+..|.+-
T Consensus       391 ~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~-~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~  464 (481)
T TIGR01649       391 QPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFF-PKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEP  464 (481)
T ss_pred             CCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEe-cCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCC
Confidence            345678999999999999999999999998  6666664 22211 235799999999999999999999888763

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>PLN03120 nucleic acid binding protein; Provisional

Probab=96.13  E-value=0.016  Score=55.79  Aligned_cols=68  Identities=12%  Similarity=0.200  Sum_probs=56.4

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      +.+|||.+||+.++-.+|.+++..++...++.|- |.. .+   +.|+|+|....+++.++ .||+..|.|-.+
T Consensus         4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~---GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V   72 (260)
T PLN03120          4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RS---QIAYVTFKDPQGAETAL-LLSGATIVDQSV   72 (260)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CC---CEEEEEeCcHHHHHHHH-HhcCCeeCCceE
Confidence            5789999999999999999999999999999883 322 22   58999999999888888 488887776443

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=96.10  E-value=0.014  Score=60.81  Aligned_cols=76  Identities=13%  Similarity=0.156  Sum_probs=60.3

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ...+..|||++|+++++.++|.++|++++....+.+--.. ..+---.|+|+|....++..|+..+|+..+.+-.+.
T Consensus       282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~  357 (562)
T TIGR01628       282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLY  357 (562)
T ss_pred             ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeE
Confidence            4567889999999999999999999999987777663221 112224799999999999999999999877775554

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=96.07  E-value=0.017  Score=60.11  Aligned_cols=71  Identities=27%  Similarity=0.455  Sum_probs=58.5

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      .||||++||++++.++|.++|++++-...+-+. |... ++-...|+|.|....++..|+..+++..+.+-.+
T Consensus         1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t-~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i   72 (562)
T TIGR01628         1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVT-RRSLGYGYVNFQNPADAERALETMNFKRLGGKPI   72 (562)
T ss_pred             CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEECCeeE
Confidence            489999999999999999999999988877773 4442 3445689999999999999999898877766443

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.00  E-value=0.0041  Score=36.80  Aligned_cols=24  Identities=33%  Similarity=0.852  Sum_probs=20.7

Q ss_pred             ecCCCCcccccChhhHHhhhhhcc
Q psy4687         306 WLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       306 ~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      |.|+.|++.|....=+++|+.+.|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999999876

...

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=95.96  E-value=0.02  Score=60.68  Aligned_cols=73  Identities=22%  Similarity=0.309  Sum_probs=60.6

Q ss_pred             CcccCCCCeEEeeecCCCCCHHHHHHHHhhc--CCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          28 PRALHRTSSIFLRNLAPTITKAEVENLCKRY--SGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~--~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      +..+.+...|||++||.+++-++|.++|+++  +-..++.+.     +.   .|+|.|....++..|+..||+..|.+..
T Consensus       227 ~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rg---fAFVeF~s~e~A~kAi~~lnG~~i~Gr~  298 (578)
T TIGR01648       227 EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RD---YAFVHFEDREDAVKAMDELNGKELEGSE  298 (578)
T ss_pred             ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cC---eEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence            3445566889999999999999999999999  667777542     33   5999999999999999999999888876


Q ss_pred             ccc
Q psy4687         106 LGA  108 (339)
Q Consensus       106 l~~  108 (339)
                      +..
T Consensus       299 I~V  301 (578)
T TIGR01648       299 IEV  301 (578)
T ss_pred             EEE
Confidence            653

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=95.68  E-value=0.04  Score=48.63  Aligned_cols=74  Identities=19%  Similarity=0.303  Sum_probs=62.3

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+|||.+||+.++.++|.+++++++...++.+.-=....+.-..|.|.|....++..|+..+++..+.+..+.
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~  188 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLR  188 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeE
Confidence            59999999999999999999999999998888742223346667999999999999999999988887776654

>KOG0114|consensus

Probab=95.64  E-value=0.048  Score=46.13  Aligned_cols=68  Identities=22%  Similarity=0.424  Sum_probs=59.7

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      -+.-|||||+|-.||.++.-+++-+++-..-+-++---..|.   .++|.|..=.+++.||..|++.-+.+
T Consensus        17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrG---TAFVVYedi~dAk~A~dhlsg~n~~~   84 (124)
T KOG0114|consen   17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRG---TAFVVYEDIFDAKKACDHLSGYNVDN   84 (124)
T ss_pred             hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCc---eEEEEehHhhhHHHHHHHhcccccCC
Confidence            456789999999999999999999999999999987666655   89999999999999999998765555

>KOG3152|consensus

Probab=95.57  E-value=0.0065  Score=58.09  Aligned_cols=92  Identities=21%  Similarity=0.383  Sum_probs=70.1

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCC-------------CCCceEEEEEEecCcccHHHHHHhhccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQP-------------DRRWFRRGWVTFRRDVDIKEICWNLNNI   99 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p-------------~krf~R~GWV~f~~~~~~~~~~~~L~~~   99 (339)
                      +|..+||-+|||...-..|-+++..|+-.-||.|. |..             .+.-|+-|||-|..-..++.+...|||.
T Consensus        73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylq-pE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~  151 (278)
T KOG3152|consen   73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQ-PEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT  151 (278)
T ss_pred             cceEEEeccCCCccCHHHHHHHHHhccccceEEec-chhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence            88999999999999999999999999999999985 322             2355788999999999999999999998


Q ss_pred             cccCcccccccccccccccccccCcccc
Q psy4687         100 RLRDCELGAIVNRDLSRRVRTVSGLTSL  127 (339)
Q Consensus       100 ~i~d~el~~~v~r~~~~~~r~~~~it~~  127 (339)
                      .|.|-.-++.  ++.-=.+++.|+..++
T Consensus       152 ~Iggkk~S~~--~~dlWNmKYLprFKW~  177 (278)
T KOG3152|consen  152 PIGGKKKSPF--RDDLWNMKYLPRFKWV  177 (278)
T ss_pred             ccCCCCCCch--HHhhhhhhhccCcchH
Confidence            8877442211  2222234455555543

>PLN03121 nucleic acid binding protein; Provisional

Probab=95.56  E-value=0.042  Score=52.33  Aligned_cols=68  Identities=18%  Similarity=0.254  Sum_probs=56.6

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      .+.+||+.+|+|.++..+|.+|+..++-..++-|-..   ++.-..|||+|....++..|+ .|++..|.|-
T Consensus         4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~   71 (243)
T PLN03121          4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQ   71 (243)
T ss_pred             CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCc
Confidence            4579999999999999999999999999998888543   233368999999988887776 6888877663

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=95.42  E-value=0.039  Score=58.94  Aligned_cols=72  Identities=14%  Similarity=0.321  Sum_probs=59.9

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCce-EEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWF-RRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~-R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ...|||.+||++++-++|.++++.++....+.|. ||..  +.+ ..|||.|....++.+|...+|+..+.|-.|.
T Consensus       204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~t--gksKGfGFVeFe~~e~A~kAI~amNg~elgGr~Lr  277 (612)
T TIGR01645       204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG--RGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLR  277 (612)
T ss_pred             cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC--CCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence            4689999999999999999999999998888774 3432  223 3899999999999999999998888776653

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=95.28  E-value=0.055  Score=55.74  Aligned_cols=72  Identities=15%  Similarity=0.168  Sum_probs=61.3

Q ss_pred             CCCCeEEeeecCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          32 HRTSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        32 h~t~slfIk~IpP-~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      +.+++|||++||+ .++-++|.+++..++...++.+--  ..+   -.|+|.|....++..|+..||+..+.+..|..
T Consensus       273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~--~~~---g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v  345 (481)
T TIGR01649       273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK--NKK---ETALIEMADPYQAQLALTHLNGVKLFGKPLRV  345 (481)
T ss_pred             CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe--CCC---CEEEEEECCHHHHHHHHHHhCCCEECCceEEE
Confidence            4678999999999 699999999999999999998731  122   47999999999999999999999998876653

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>PHA00616 hypothetical protein

Probab=95.08  E-value=0.0066  Score=43.33  Aligned_cols=26  Identities=19%  Similarity=0.473  Sum_probs=24.8

Q ss_pred             ecCCCCcccccChhhHHhhhhhcchH
Q psy4687         306 WLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       306 ~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      |.|+.|||.|.-..-+.+|+++.|.+
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~   27 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQ   27 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCC
Confidence            78999999999999999999999987

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=95.07  E-value=0.081  Score=44.06  Aligned_cols=60  Identities=10%  Similarity=0.236  Sum_probs=38.9

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNI   99 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~   99 (339)
                      ++.|.|..+.+.+||++|.++|++++...||-++.=..      .|||-|+.+..++.++..+...
T Consensus         1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~   60 (105)
T PF08777_consen    1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA   60 (105)
T ss_dssp             --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred             CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence            35688999999999999999999999999998885444      8999999999888888776543

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=95.07  E-value=0.051  Score=55.41  Aligned_cols=66  Identities=14%  Similarity=0.271  Sum_probs=49.3

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhc----C--------CeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRY----S--------GFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRL  101 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~----~--------GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i  101 (339)
                      ...|||.+||++++-++|.++++.+    +        .+..+-+   ...++   .|||.|....++..|+ +||++.+
T Consensus       175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---~~~kg---~afVeF~~~e~A~~Al-~l~g~~~  247 (509)
T TIGR01642       175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---NKEKN---FAFLEFRTVEEATFAM-ALDSIIY  247 (509)
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---CCCCC---EEEEEeCCHHHHhhhh-cCCCeEe
Confidence            3579999999999999999999985    1        1222222   23444   4999999998888887 5888877


Q ss_pred             cCccc
Q psy4687         102 RDCEL  106 (339)
Q Consensus       102 ~d~el  106 (339)
                      .+..|
T Consensus       248 ~g~~l  252 (509)
T TIGR01642       248 SNVFL  252 (509)
T ss_pred             eCcee
Confidence            77554

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=94.31  E-value=0.14  Score=51.66  Aligned_cols=71  Identities=15%  Similarity=0.168  Sum_probs=55.8

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ..+|||.+||++++-++|.+++.+++....+-|- |+.. .+--..|+|.|....++..|+ .|++..+.+-.+
T Consensus        89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~-~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i  160 (457)
T TIGR01622        89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNS-RRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPI  160 (457)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC-CCcceEEEEEECCHHHHHHHH-HhCCCEECCeee
Confidence            4689999999999999999999999988777773 3332 233457999999998888876 488877766443

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=94.20  E-value=0.1  Score=55.75  Aligned_cols=78  Identities=9%  Similarity=0.178  Sum_probs=63.2

Q ss_pred             cccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          29 RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        29 ~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .++-..+.|||.+||++++.++|.+++.+++....+.+. |+...+ --..|||.|+...++..++..+|+..+.+-.+.
T Consensus       102 ~a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgk-skGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik  180 (612)
T TIGR01645       102 QALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGK-HKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK  180 (612)
T ss_pred             hhhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCC-cCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence            334455789999999999999999999999999888874 554432 234799999999999999999999888776543

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0117|consensus

Probab=93.77  E-value=0.13  Score=52.87  Aligned_cols=76  Identities=17%  Similarity=0.292  Sum_probs=62.4

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      .+..+-+-..||||||+-++|-+.|++++++|+-..||---     |.   .|+|.|..-.++-.||.++|+..|++..+
T Consensus       252 ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rD---YaFVHf~eR~davkAm~~~ngkeldG~~i  323 (506)
T KOG0117|consen  252 DEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RD---YAFVHFAEREDAVKAMKETNGKELDGSPI  323 (506)
T ss_pred             ChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cc---eeEEeecchHHHHHHHHHhcCceecCceE
Confidence            33355556899999999999999999999999878887643     44   79999998888888999999999998766


Q ss_pred             cccc
Q psy4687         107 GAIV  110 (339)
Q Consensus       107 ~~~v  110 (339)
                      ..+.
T Consensus       324 EvtL  327 (506)
T KOG0117|consen  324 EVTL  327 (506)
T ss_pred             EEEe
Confidence            5443

>KOG1457|consensus

Probab=93.69  E-value=0.055  Score=51.23  Aligned_cols=63  Identities=27%  Similarity=0.417  Sum_probs=52.4

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRL  101 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i  101 (339)
                      ++|||-|+.|+|+-++|..+++++|||.+|-|-    .|+=.-++++-|..=..+.++|..|++..|
T Consensus       211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~----~~~g~~vaf~~~~~~~~at~am~~lqg~~~  273 (284)
T KOG1457|consen  211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIR----ARGGMPVAFADFEEIEQATDAMNHLQGNLL  273 (284)
T ss_pred             hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe----cCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence            689999999999999999999999999999985    334445788888777777788888876544

>smart00355 ZnF_C2H2 zinc finger

Probab=93.33  E-value=0.049  Score=32.23  Aligned_cols=24  Identities=33%  Similarity=0.724  Sum_probs=21.5

Q ss_pred             ecCCCCcccccChhhHHhhhhhcch
Q psy4687         306 WLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       306 ~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      |.|+.|++.|....-+..|+. .|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~-~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR-THX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH-Hhc
Confidence            679999999999999999998 654

>smart00361 RRM_1 RNA recognition motif

Probab=93.24  E-value=0.21  Score=37.80  Aligned_cols=55  Identities=15%  Similarity=0.112  Sum_probs=38.9

Q ss_pred             HHHHHHHhhcCCeeEEE--ecCCCCC-CCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          49 AEVENLCKRYSGFLRVA--IADPQPD-RRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        49 ~ele~~ck~~~GF~~ls--LSDP~p~-krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      +.+.+.|.+++.+..+.  +-|+... .+---.|+|+|....++..|+..||+..+.+
T Consensus         7 ~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g   64 (70)
T smart00361        7 REFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG   64 (70)
T ss_pred             HHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            44555666999999884  4443220 1111359999999999999999999877666

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.16  E-value=0.05  Score=34.15  Aligned_cols=24  Identities=21%  Similarity=0.541  Sum_probs=21.5

Q ss_pred             eecCCCCcccccChhhHHhhhhhc
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      +|-|..|+|-|.+..-+..|+..|
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccC
Confidence            488999999999999999999874

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG0117|consensus

Probab=92.98  E-value=0.5  Score=48.66  Aligned_cols=87  Identities=20%  Similarity=0.302  Sum_probs=69.1

Q ss_pred             cCCCCCCCCCCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEE-ecCCCCCCCceEEEEEEecCcccHHHHHHh
Q psy4687          17 INGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVA-IADPQPDRRWFRRGWVTFRRDVDIKEICWN   95 (339)
Q Consensus        17 ~~~~~~~~~~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~ls-LSDP~p~krf~R~GWV~f~~~~~~~~~~~~   95 (339)
                      =+|||+.+..+|.+ ..++-+||=.||-++.-++|.-+|.+++---=|- +-||....+ -=.++|||.....+++|...
T Consensus        67 k~ggPpP~weg~~p-~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~n-RGYAFVtf~~Ke~Aq~Aik~  144 (506)
T KOG0117|consen   67 KYGGPPPGWEGPPP-PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDN-RGYAFVTFCTKEEAQEAIKE  144 (506)
T ss_pred             ccCCCCCcccCCCC-CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCC-cceEEEEeecHHHHHHHHHH
Confidence            37888888667776 7899999999999999999999999997632233 356664332 12689999999999999999


Q ss_pred             hccccccCcc
Q psy4687          96 LNNIRLRDCE  105 (339)
Q Consensus        96 L~~~~i~d~e  105 (339)
                      |||..|+-+.
T Consensus       145 lnn~Eir~GK  154 (506)
T KOG0117|consen  145 LNNYEIRPGK  154 (506)
T ss_pred             hhCccccCCC
Confidence            9999888655

>KOG0108|consensus

Probab=92.57  E-value=0.39  Score=49.52  Aligned_cols=72  Identities=15%  Similarity=0.198  Sum_probs=64.2

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      .++||.+||.++|.++|..+|++.++..-+-+-..-..=+|-=.|++.|....++..+..+||+..+.+-.|
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l   90 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL   90 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence            899999999999999999999999998888887777766888899999999988888888999887776554

>KOG1457|consensus

Probab=92.51  E-value=0.33  Score=46.12  Aligned_cols=67  Identities=19%  Similarity=0.319  Sum_probs=54.6

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeE--EEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLR--VAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR  102 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~--lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~  102 (339)
                      .+||+-.+|-+|.--||..++++++||.-  |-+++-. .+-.--+|+|+|..-..+-++++.||+++.+
T Consensus        35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~-~~~~~pvaFatF~s~q~A~aamnaLNGvrFD  103 (284)
T KOG1457|consen   35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKG-DQVCKPVAFATFTSHQFALAAMNALNGVRFD  103 (284)
T ss_pred             ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCC-CccccceEEEEecchHHHHHHHHHhcCeeec
Confidence            57999999999999999999999999864  3334332 1112258999999999999999999999886

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.46  E-value=0.076  Score=34.70  Aligned_cols=31  Identities=23%  Similarity=0.441  Sum_probs=25.5

Q ss_pred             CeecCCCCcccccChhhHHhhhhhc-chHHHH
Q psy4687         304 DKWLCPLSGKKFKGPDFIRKHIFNK-HAEKVE  334 (339)
Q Consensus       304 ~K~rC~~C~KlFk~~eFV~KHI~nK-H~e~v~  334 (339)
                      ++|.|.+|++-|.++.-+..|+..| |...++
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~   33 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVK   33 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChHHHHHHHH
Confidence            5789999999999999999999764 555544

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG0127|consensus

Probab=92.36  E-value=0.28  Score=51.65  Aligned_cols=73  Identities=14%  Similarity=0.202  Sum_probs=59.4

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.+||+++||++++-++|+++++.++++.+-.+ .++..+. ---.|+|+|.=..|...+...+++.++.++-+.
T Consensus         5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~-~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~   78 (678)
T KOG0127|consen    5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSE-KRGFGFVTFAMEEDVQRALAETEQSKFEGRILN   78 (678)
T ss_pred             CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCccc-ccCccceeeehHhHHHHHHHHhhcCcccceecc
Confidence            378999999999999999999999999887555 5555421 112599999999999999998998888887665

>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons

Probab=92.27  E-value=0.17  Score=45.77  Aligned_cols=68  Identities=13%  Similarity=0.212  Sum_probs=48.3

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhh-cCCe---eEEE--ecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKR-YSGF---LRVA--IADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR  102 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~-~~GF---~~ls--LSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~  102 (339)
                      .-|.||+|||+++.+++.+.++. +++.   .++.  .++..-...-+-+++|.|....++.+.+..+++....
T Consensus         8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~   81 (176)
T PF03467_consen    8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV   81 (176)
T ss_dssp             -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred             ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence            46889999999999999997776 5554   5665  5665555566788999999999999888888874443

Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.

>PLN03213 repressor of silencing 3; Provisional

Probab=92.07  E-value=0.47  Score=49.57  Aligned_cols=72  Identities=7%  Similarity=0.124  Sum_probs=60.5

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCc--ccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRD--VDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~--~~~~~~~~~L~~~~i~d~el~  107 (339)
                      -.+.+|||-+|+.+|+.++|.+++.+++.+.+|.|-   ..+. -.-|+|.|..+  .++..+...||+....|..|.
T Consensus         8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp---RETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK   81 (759)
T PLN03213          8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV---RTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR   81 (759)
T ss_pred             CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe---cccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence            356899999999999999999999999999999994   2222 45689999987  568888899999888887764

>KOG4206|consensus

Probab=91.98  E-value=0.8  Score=43.19  Aligned_cols=70  Identities=16%  Similarity=0.302  Sum_probs=58.6

Q ss_pred             CCCeEEeeecCCCCCHHHHHH----HHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          33 RTSSIFLRNLAPTITKAEVEN----LCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~----~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      ...+|+|++++--|.+++|-.    +++++++..-++..-+.+-|.   -+||+|+....+..|+.+|+|...-|=.
T Consensus         8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRG---QA~VvFk~~~~As~A~r~l~gfpFygK~   81 (221)
T KOG4206|consen    8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRG---QAFVVFKETEAASAALRALQGFPFYGKP   81 (221)
T ss_pred             CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccC---ceEEEecChhHHHHHHHHhcCCcccCch
Confidence            334999999999999999988    999999988887776777666   8999999988888888899987665533

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=91.90  E-value=0.76  Score=38.01  Aligned_cols=69  Identities=10%  Similarity=0.136  Sum_probs=49.8

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhc--CCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRY--SGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~--~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      ++|+||+||...|++.|.+++.+.  +.|..|.| -|.... .=.-.|+|-|.....+..-....++.+...+
T Consensus         2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~-~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~   73 (97)
T PF04059_consen    2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNK-CNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF   73 (97)
T ss_pred             eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCC-CceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence            689999999999999999988876  34666666 222222 2234788999888777777777777766543

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=91.55  E-value=0.11  Score=31.65  Aligned_cols=23  Identities=26%  Similarity=0.668  Sum_probs=21.2

Q ss_pred             ecCCCCcccccChhhHHhhhhhc
Q psy4687         306 WLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       306 ~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      |.|.+|++.|.++.-++.|+..|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            78999999999999999999764

>KOG0122|consensus

Probab=91.26  E-value=0.93  Score=43.53  Aligned_cols=75  Identities=19%  Similarity=0.238  Sum_probs=61.3

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      +-+++|-|-|+|-+....+|++++..++++.|++|.==...-.+-=-|+|+|..-.++..|...||+...+.--|
T Consensus       187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LIL  261 (270)
T KOG0122|consen  187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLIL  261 (270)
T ss_pred             CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEE
Confidence            467889999999999999999999999999999997443333444469999999999888888899876555333

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=91.03  E-value=0.13  Score=31.78  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=22.5

Q ss_pred             ecCCCCcccccChhhHHhhhhhcch
Q psy4687         306 WLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       306 ~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      |.|..|++.|....=+..|++..|+
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCccCCccCChhHHHHHhHHhcC
Confidence            7899999999999999999977653

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.96  E-value=0.15  Score=35.38  Aligned_cols=29  Identities=28%  Similarity=0.457  Sum_probs=22.0

Q ss_pred             cCCeecCCCCcccccCh----hhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGP----DFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~----eFV~KHI~nKH~  330 (339)
                      +..+.+|+.|+|.|++.    .=+..||.++||
T Consensus        13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~hp   45 (45)
T PF02892_consen   13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLKKKHP   45 (45)
T ss_dssp             CSS-EEETTTTEE-----SSTHHHHHHHHHTTH
T ss_pred             CcCeEEeCCCCeEEeeCCCcHHHHHHhhhhhCc
Confidence            57899999999999984    788999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>KOG4212|consensus

Probab=89.52  E-value=0.62  Score=48.00  Aligned_cols=75  Identities=21%  Similarity=0.278  Sum_probs=64.9

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      -+-+..|.+|||||++|-++|=+-|..-+++++-.+|.-+-++=.+     .|-|-|.+..++.-||..+++.++++-++
T Consensus       529 a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gks-----kGVVrF~s~edAEra~a~Mngs~l~Gr~I  603 (608)
T KOG4212|consen  529 AVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKS-----KGVVRFFSPEDAERACALMNGSRLDGRNI  603 (608)
T ss_pred             cccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCc-----cceEEecCHHHHHHHHHHhccCcccCcee
Confidence            4566778899999999999999999999999999999888666665     56888999999999999999999987544

>KOG0121|consensus

Probab=88.47  E-value=1.4  Score=38.73  Aligned_cols=77  Identities=16%  Similarity=0.234  Sum_probs=68.1

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      .-+++-+.++|++-||+--.+-++|-+++.+-+-.+++-++=-.-.+.+-=-++|.|-...++..|+.-|+++++++
T Consensus        29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd  105 (153)
T KOG0121|consen   29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD  105 (153)
T ss_pred             HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc
Confidence            45678889999999999999999999999999999999998655666777788999988888888888899999887

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=88.04  E-value=0.33  Score=37.99  Aligned_cols=28  Identities=25%  Similarity=0.695  Sum_probs=23.7

Q ss_pred             eecCCCCcccccChhhHHhhhhhc-chHH
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNK-HAEK  332 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nK-H~e~  332 (339)
                      .|.|..|++.|+..+=+..||..+ |...
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~   78 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKKR   78 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC-
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCCc
Confidence            899999999999999999999976 5544

>KOG4206|consensus

Probab=87.83  E-value=1.4  Score=41.62  Aligned_cols=66  Identities=17%  Similarity=0.371  Sum_probs=58.7

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR  102 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~  102 (339)
                      .....||+-+||.....+-++.+...++||+.+.+-++.+.     +++|.|..++-...+...|++.+|.
T Consensus       144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~-----iAfve~~~d~~a~~a~~~lq~~~it  209 (221)
T KOG4206|consen  144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSG-----IAFVEFLSDRQASAAQQALQGFKIT  209 (221)
T ss_pred             CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCc-----eeEEecchhhhhHHHhhhhccceec
Confidence            44578999999999999999999999999999999999887     9999999998777777788887776

>KOG0116|consensus

Probab=87.52  E-value=1.5  Score=45.12  Aligned_cols=65  Identities=23%  Similarity=0.400  Sum_probs=47.4

Q ss_pred             EEeeecCCCCCHHHHHHHHhhc-----CCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          37 IFLRNLAPTITKAEVENLCKRY-----SGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        37 lfIk~IpP~isr~ele~~ck~~-----~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ||+++||++++-.+|+++++.+     .|+...+..    .+.. =-|+|.|..+.+++.++.+ +-+.|.+..|.
T Consensus       291 i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~----~~~~-~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~  360 (419)
T KOG0116|consen  291 IFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPG----GKNP-CFGFVEFENAAAVQNAIEA-SPLEIGGRKLN  360 (419)
T ss_pred             eEeecCCCCCCHHHHHHHHhhcccccccceEEeccC----CCcC-ceEEEEEeecchhhhhhhc-CccccCCeeEE
Confidence            9999999999999999999998     577776622    2233 5799999999988876642 13334444443

>KOG0533|consensus

Probab=87.24  E-value=2  Score=41.13  Aligned_cols=74  Identities=20%  Similarity=0.291  Sum_probs=62.6

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.+-|.|.++|..|+=.+|.+++..+....++++. +.+.-+=.=.|=|+|+...|+..++..+|++.++++.+.
T Consensus        82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vh-y~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk  155 (243)
T KOG0533|consen   82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVH-YDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMK  155 (243)
T ss_pred             CcceeeeecCCcCcchHHHHHHHHHhccceEEeec-cCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceee
Confidence            33779999999999999999999999988888885 444444445789999999999999999999999988754

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=87.03  E-value=0.39  Score=34.99  Aligned_cols=27  Identities=30%  Similarity=0.630  Sum_probs=19.2

Q ss_pred             CeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         304 DKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       304 ~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      +.|.||.|+|.|.. .-+..|+..+|+.
T Consensus         1 ~~f~CP~C~~~~~~-~~L~~H~~~~H~~   27 (54)
T PF05605_consen    1 DSFTCPYCGKGFSE-SSLVEHCEDEHRS   27 (54)
T ss_pred             CCcCCCCCCCccCH-HHHHHHHHhHCcC
Confidence            35788888885544 4577888888875

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=86.23  E-value=0.49  Score=29.57  Aligned_cols=20  Identities=45%  Similarity=0.874  Sum_probs=17.7

Q ss_pred             ecCCCCcccccChhhHHhhhh
Q psy4687         306 WLCPLSGKKFKGPDFIRKHIF  326 (339)
Q Consensus       306 ~rC~~C~KlFk~~eFV~KHI~  326 (339)
                      ..|+.|+.+| .++-+.||+.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            3699999999 8999999975

>PHA02768 hypothetical protein; Provisional

Probab=85.71  E-value=0.45  Score=35.60  Aligned_cols=24  Identities=17%  Similarity=0.502  Sum_probs=21.9

Q ss_pred             ecCCCCcccccChhhHHhhhhhcc
Q psy4687         306 WLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       306 ~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      |.|+.|||.|.-..-+..|+++-+
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~   29 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN   29 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC
Confidence            789999999999999999999833

>KOG0107|consensus

Probab=85.48  E-value=2.9  Score=38.45  Aligned_cols=65  Identities=22%  Similarity=0.340  Sum_probs=53.9

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCC--eeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSG--FLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~G--F~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .+.+++=++++..++.|||.++..++-  =.|||-   +|. .   -++|.|+...|+.+|+-.||+.+|-+..
T Consensus        10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr---nPP-G---fAFVEFed~RDA~DAvr~LDG~~~cG~r   76 (195)
T KOG0107|consen   10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR---NPP-G---FAFVEFEDPRDAEDAVRYLDGKDICGSR   76 (195)
T ss_pred             CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee---cCC-C---ceEEeccCcccHHHHHhhcCCccccCce
Confidence            689999999999999999999999975  356665   332 2   4789999999999999999998877744

>KOG3993|consensus

Probab=84.89  E-value=0.32  Score=49.81  Aligned_cols=29  Identities=31%  Similarity=0.658  Sum_probs=25.8

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .++-|-|..|+|+|+-.-|++||...-|.
T Consensus       353 s~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  353 SSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             cCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence            57799999999999999999999876654

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=84.53  E-value=0.51  Score=28.49  Aligned_cols=24  Identities=17%  Similarity=0.463  Sum_probs=19.0

Q ss_pred             ecCCCCcccccChhhHHhhhhhcch
Q psy4687         306 WLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       306 ~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      |+|+.|+=... +.-+.+|++.+||
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            78999997777 7789999999886

>PF13893 RRM_5: RNA recognition motif

Probab=82.68  E-value=2.4  Score=30.20  Aligned_cols=51  Identities=16%  Similarity=0.202  Sum_probs=41.1

Q ss_pred             HHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          51 VENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        51 le~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      |-++|+++|-...+.+....     -..++|.|....++..+...||+..+.|..+
T Consensus         1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l   51 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPL   51 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEE
T ss_pred             ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence            45789999999999997555     2479999999999999999999988877544

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG4207|consensus

Probab=82.47  E-value=5.1  Score=37.88  Aligned_cols=82  Identities=18%  Similarity=0.227  Sum_probs=64.4

Q ss_pred             CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      |-..--+++|.|.||---.|-.+|-.++++++-.-=|.| -|+.. +.=-.-|+|-|+---++.+|+.+|++.-|++-+|
T Consensus         7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~T-r~sRgFaFVrf~~k~daedA~damDG~~ldgRel   85 (256)
T KOG4207|consen    7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYT-RQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL   85 (256)
T ss_pred             CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceeccccccc-ccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence            334467899999999999999999999999987666666 33332 1222358999999999999999999999998887


Q ss_pred             cccc
Q psy4687         107 GAIV  110 (339)
Q Consensus       107 ~~~v  110 (339)
                      -+++
T Consensus        86 rVq~   89 (256)
T KOG4207|consen   86 RVQM   89 (256)
T ss_pred             eehh
Confidence            5443

>KOG0127|consensus

Probab=81.70  E-value=3.5  Score=43.72  Aligned_cols=70  Identities=16%  Similarity=0.285  Sum_probs=57.1

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .-|.|||+|=.|+..+|..+|..++-|.-+.|- -.+.-+.-=-|+|.|..-.++..++..+|+..|.+-.
T Consensus       118 ~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP-~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~  187 (678)
T KOG0127|consen  118 WRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIP-RKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRP  187 (678)
T ss_pred             ceEEeecCCcccCcHHHHHHHhhcceEEEEEcc-cCCCCCccceEEEEEeeHHHHHHHHHhccCceecCce
Confidence            568899999999999999999999999888874 2222233356899999999999999999988887633

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	339
3ax1_A	358	Serrate RNA effector molecule; miRNA processing, p	5e-34
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding; 2.74A {Arabidopsis thaliana} Length = 358

 Score =  127 bits (319), Expect = 5e-34
 Identities = 39/190 (20%), Positives = 64/190 (33%), Gaps = 14/190 (7%)

Query: 155 LSSKNPVLQNITDYLIEEASAEEEELLGKSEENTE---ETEQVDPNVLRVLDRLILYLRI 211
           L S+  + +N+      E S  E+   G +         T       + +LD L+ YL  
Sbjct: 160 LDSEKKIEENVLQGSETEKSGREKLHSGSTGPVVIIRGLTSVKGLEGVELLDTLVTYLWR 219

Query: 212 VHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQ 271
           VH +DYY   E           G+ H R     S     +  +  S F +     +    
Sbjct: 220 VHGLDYYGKVETNE------AKGLRHVRAEGKVS---DAKGDENESKFDSHWQERLKGQD 270

Query: 272 EPTPEELDQLGAKKTDAEVEKFIAANTQEISTDKWLCPLSG--KKFKGPDFIRKHIFNKH 329
                   +         ++  +     E    K+ C   G  K F   +F+ KH+  KH
Sbjct: 271 PLEVMAAKEKIDAAATEALDPHVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKH 330

Query: 330 AEKVEEVKKE 339
            E V E+  +
Sbjct: 331 TELVTELTTK 340

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 60/399 (15%), Positives = 117/399 (29%), Gaps = 119/399 (29%)

Query: 9   MLNSYNNIINGGESK---NEPPPRALHRTSSIF--LRNLAPTITKAEVENLCKRYSGFLR 63
           + +   +I++  E            +  T  +F  L +    + +  VE + +    FL 
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDA--VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 64  VAIA----DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNR-DLSRRV 118
             I      P    R +          ++ ++  +N N +  +       V+R     ++
Sbjct: 96  SPIKTEQRQPSMMTRMY----------IEQRDRLYNDNQVFAKY-----NVSRLQPYLKL 140

Query: 119 RTVSGLTSLKP---VVQFDMK------LSLWTDGQEPAQQPMSY-----TLSSKN----- 159
           R    L  L+P   V+   +       ++L        Q  M +      L + N     
Sbjct: 141 RQ--ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 160 -PVLQNITDYLIEEASAEEEELLGKSEENTEETEQVD---------PNVLRVLDRLILYL 209
             +LQ +  Y I+       +     +      +             N L VL   +   
Sbjct: 199 LEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNA 256

Query: 210 RIVHSVDYYNHCEYPNEDEMPNRCGI-IHTRGSAPASKVTPQEITDYCSTFQNKMSSLVS 268
           +  ++ +                C I + TR           ++TD+ S       SL  
Sbjct: 257 KAWNAFN--------------LSCKILLTTRFK---------QVTDFLSAATTTHISLDH 293

Query: 269 SPQEPTPEELDQLGAKKTDAEVEK--------------FIAANTQE-IST-DKWLCPLSG 312
                TP+E+  L  K  D   +                IA + ++ ++T D W   ++ 
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-HVNC 352

Query: 313 KKFK----------GPDFIRKH-----IFNKHA---EKV 333
            K             P   RK      +F   A     +
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 59/353 (16%), Positives = 117/353 (33%), Gaps = 97/353 (27%)

Query: 33  RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIAD-PQPDRRWFRRGWVTFRRDVDIKE 91
            T+ I L + + T+T  EV++L  +Y   L     D P                    +E
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKY---LDCRPQDLP--------------------RE 321

Query: 92  ICWNLNNIRLRDCEL-GAIVNRDLSR--RVRTVSG--LTSLKPVVQFDMKLSLWTDGQEP 146
           +         R   +    +   L+     + V+   LT++       ++ SL  +  EP
Sbjct: 322 VL----TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-------IESSL--NVLEP 368

Query: 147 A-QQPMSYTLSSKNPVLQ---NITDYLIE---EASAEEE------ELLGKS--EENTEET 191
           A  + M   LS    V     +I   L+        + +      +L   S  E+  +E+
Sbjct: 369 AEYRKMFDRLS----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 192 EQVDPNVLRVLDRLILYLRIVHS--VDYYN-HCEYPNEDEMPNRC-GII------HTRGS 241
               P++   L   +     +H   VD+YN    + ++D +P             H +  
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 242 APASKVT--PQEITDYCSTF-QNKMSSLVSSPQEPTPEELDQLGAKKTDAEV-EKFIAAN 297
               ++T       D+   F + K+    S+    +   L+ L       +  + +I  N
Sbjct: 485 EHPERMTLFRMVFLDF--RFLEQKIRH-DSTAWNASGSILNTL----QQLKFYKPYICDN 537

Query: 298 TQEISTDKWLCPLSGKKF-----------KGPDFIRKHIFNKHAEKVEEVKKE 339
             +   ++ +  +    F           K  D +R  +  +     EE  K+
Sbjct: 538 --DPKYERLVNAI--LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	339
3ax1_A	358	Serrate RNA effector molecule; miRNA processing, p	100.0
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	98.37
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	98.3
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	98.3
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.28
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	98.27
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	98.27
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	98.26
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	98.22
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	98.22
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	98.21
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	98.21
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	98.19
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	98.17
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	98.17
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	98.17
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	98.16
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	98.15
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	98.15
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	98.14
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	98.14
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	98.14
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	98.14
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	98.13
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	98.13
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	98.13
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	98.12
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.12
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	98.11
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	98.11
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	98.11
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	98.1
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	98.09
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	98.08
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	98.08
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	98.08
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	98.07
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	98.07
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	98.06
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	98.06
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	98.05
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.04
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	98.04
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	98.04
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	98.04
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	98.04
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	98.04
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	98.03
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	98.03
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	98.02
1x5o_A	114	RNA binding motif, single-stranded interacting pro	98.02
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	98.02
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	98.02
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	98.02
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	98.01
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	98.01
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	98.01
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	98.01
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	98.0
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	97.99
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	97.99
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	97.98
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	97.98
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	97.97
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	97.97
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	97.97
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	97.95
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	97.95
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	97.94
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	97.94
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	97.94
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	97.94
1x4e_A	85	RNA binding motif, single-stranded interacting pro	97.93
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	97.92
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	97.92
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	97.92
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	97.9
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	97.9
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	97.89
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	97.88
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	97.87
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	97.87
2div_A	99	TRNA selenocysteine associated protein; structural	97.86
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	97.86
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	97.84
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	97.84
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	97.84
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	97.83
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	97.83
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	97.82
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	97.82
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	97.82
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	97.81
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	97.79
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	97.78
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	97.77
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	97.76
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	97.76
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	97.76
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	97.75
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	97.74
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	97.74
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	97.74
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	97.73
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	97.72
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	97.72
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	97.72
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	97.71
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	97.7
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	97.7
2dis_A	109	Unnamed protein product; structural genomics, RRM	97.69
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	97.68
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	97.68
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	97.68
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	97.68
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	97.66
1x5p_A	97	Negative elongation factor E; structure genomics,	97.66
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	97.65
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	97.64
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	97.62
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	97.6
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	97.59
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	97.59
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	97.59
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	97.58
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	97.57
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	97.56
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	97.55
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	97.54
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	97.53
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	97.53
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	97.52
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	97.52
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	97.52
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	97.51
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	97.51
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	97.5
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	97.5
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	97.46
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	97.46
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	97.44
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	97.44
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	97.41
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	97.41
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	97.4
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	97.39
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	97.38
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	97.38
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	97.37
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	97.35
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	97.33
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	97.32
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	97.31
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	97.31
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	97.3
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	97.27
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	97.27
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	97.25
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	96.33
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	97.21
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	97.18
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	97.17
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	97.17
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	97.12
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	97.12
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	97.1
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	97.1
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	97.09
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	97.08
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	97.07
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	97.07
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	97.06
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	97.06
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	97.04
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	97.03
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	97.01
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	97.0
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	96.98
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	96.97
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	96.96
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	96.92
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	96.91
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	96.85
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	96.85
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	96.81
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	96.78
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	96.75
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	96.75
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	96.73
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	96.64
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	96.63
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	96.54
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	96.48
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	96.39
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	96.18
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	96.1
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	95.71
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	95.48
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	95.29
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	95.22
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	94.61
1paa_A	30	Yeast transcription factor ADR1; transcription reg	94.5
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	94.48
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	94.47
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	94.41
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	94.41
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.8
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	93.7
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	93.64
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	93.6
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	93.54
1ard_A	29	Yeast transcription factor ADR1; transcription reg	93.51
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	93.36
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	93.11
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	93.03
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	93.02
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	92.14
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.98
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	92.94
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.94
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	92.86
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	92.83
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	92.74
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	91.9
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	92.69
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	92.65
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.61
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	92.59
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.53
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.36
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	92.32
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	92.23
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.11
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	92.05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	92.03
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.99
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	91.96
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	91.89
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.88
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	91.55
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	91.33
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	91.33
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	91.32
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	91.31
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.25
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	91.23
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.22
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	91.21
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	90.53
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	91.16
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	91.1
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	91.09
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	91.09
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	91.07
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.04
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	91.03
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	91.02
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.97
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.91
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.89
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.88
2ct5_A	73	Zinc finger BED domain containing protein 1; DREF	90.88
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.87
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.86
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	90.81
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	90.79
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	90.77
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	90.76
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.66
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	90.65
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.64
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	90.63
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	90.61
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	90.57
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.57
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	90.57
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.54
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.53
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.52
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.5
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.49
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	90.49
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	90.46
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	90.45
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.45
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.44
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.44
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	90.38
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	90.38
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.32
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	90.31
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.24
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.23
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.22
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.22
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.21
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.2
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.19
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.16
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	90.16
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.13
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	90.1
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	90.1
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.07
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	90.03
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	90.01
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.0
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	89.98
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.98
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.96
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	89.93
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.92
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	89.89
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	89.86
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.83
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	89.81
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.79
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	89.78
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	89.72
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.7
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.68
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	89.68
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.64
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	89.51
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.49
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	89.47
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	89.39
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	89.31
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	89.29
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.25
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.24
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.21
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.17
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	89.15
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.11
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.08
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	89.03
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	89.01
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.98
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	88.97
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.96
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	88.9
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.9
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	88.83
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	88.77
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.77
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	88.75
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	88.74
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	88.62
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	88.56
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	88.4
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	88.38
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.27
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.12
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	87.98
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	87.85
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	87.73
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.55
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	87.48
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	87.41
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	87.4
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	87.4
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	87.3
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	87.24
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	87.09
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	87.06
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	87.04
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	87.03
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	86.9
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	86.7
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.69
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	86.44
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	86.37
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	86.36
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	86.19
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	86.13
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	85.86
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	85.77
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	85.67
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	85.29
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	85.15
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	84.92
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	84.87
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	83.78
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	83.76
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	83.48
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	83.33
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	83.1
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	83.0
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	82.5
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	82.06
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	81.84
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	81.71
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	81.57
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	81.01
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	81.01
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	80.61
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	80.58
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.49

>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding; 2.74A {Arabidopsis thaliana}

Probab=100.00  E-value=3.4e-38  Score=307.63  Aligned_cols=196  Identities=21%  Similarity=0.227  Sum_probs=131.9

Q ss_pred             cccccCcccchhhhhhhhhh--hccccCCCCCCCCcccccCCCCccccchhhhhhhhhchhHHhhhcCCCCCcccccccC
Q psy4687         118 VRTVSGLTSLKPVVQFDMKL--SLWTDGQEPAQQPMSYTLSSKNPVLQNITDYLIEEASAEEEELLGKSEENTEETEQVD  195 (339)
Q Consensus       118 ~r~~~~it~~~~rl~~Dl~~--~L~~~~~~~~~~~~~~~~~~~np~~~~i~d~liee~s~eeeellg~~~~~~~~~~e~d  195 (339)
                      +..+|+++|+++||..||.+  +|-..+.      .+.+ +..||+.....+..-.+.+  +   .|++|....++...+
T Consensus       133 ap~~~P~~S~p~RI~~Dle~a~~Lv~kLD------~e~g-ie~n~l~~~~~~~~~~~~~--~---~~~~g~~~~~~~~~~  200 (358)
T 3ax1_A          133 APKAPSFTSDPKRILTDVEQTQALVRKLD------SEKK-IEENVLQGSETEKSGREKL--H---SGSTGPVVIIRGLTS  200 (358)
T ss_dssp             CCBCCGGGSCHHHHHHHHHHHHHHHHHHH------HHHT-CCCCTTC--------------------CCCCCEEECCSSC
T ss_pred             ccCCCCCCCcHHHHHHHHHHHHHHHHHHH------HhhC-Ccccccccccccccccccc--c---ccCCCcchhhccccc
Confidence            34688999999999999998  3332211      1112 2345554321110000000  0   111111110000011


Q ss_pred             -h--hHHHHHHHHHHHHHHhcceeeeccccCCCcccccccCCCCccCCCCCCCCCChhhHHHHHHHHHHhHHhccCCCCC
Q psy4687         196 -P--NVLRVLDRLILYLRIVHSVDYYNHCEYPNEDEMPNRCGIIHTRGSAPASKVTPQEITDYCSTFQNKMSSLVSSPQE  272 (339)
Q Consensus       196 -~--~l~~~LD~~i~YLR~vh~~cyyc~~ey~~~~el~~~Cp~~H~R~~~p~~~~t~~e~~~W~~~~e~k~~~~l~~~~~  272 (339)
                       .  ..+++||++|+|||+||+|||||+++|++      .||++|+|+|.++.   .....+|.++++.++...|+.   
T Consensus       201 ~~~l~~~~~LD~~i~YLRrVH~~dYY~~~E~~~------~~g~~HvR~~~~~~---~~~~~~we~~ld~~w~~~l~~---  268 (358)
T 3ax1_A          201 VKGLEGVELLDTLVTYLWRVHGLDYYGKVETNE------AKGLRHVRAEGKVS---DAKGDENESKFDSHWQERLKG---  268 (358)
T ss_dssp             CEEECSHHHHHHHHHHHHHHHCEEGGGTEECTT------CCSBCCBC-------------CHHHHHHHHHHHHHHHS---
T ss_pred             hhhhhhHHHHHHHHHHHHHHHcccccceEeecC------ccccCeecCCCCCC---CCchhhHHHHHHHHHHHHHcc---
Confidence             1  13799999999999999999999999985      69999999987643   224558999999998888853   


Q ss_pred             CChHHHHhhcCcccHHHHHHHHHhhhhhc-cC---CeecC--CCCcccccChhhHHhhhhhcchHHHHHhhc
Q psy4687         273 PTPEELDQLGAKKTDAEVEKFIAANTQEI-ST---DKWLC--PLSGKKFKGPDFIRKHIFNKHAEKVEEVKK  338 (339)
Q Consensus       273 ~~~~d~~klG~k~~eeevek~v~~~~~e~-~e---~K~rC--~~C~KlFk~~eFV~KHI~nKH~e~v~~v~~  338 (339)
                       .++++.++|++++|+++++||++++++. ++   |||||  ++|+|||||++||+|||+|||||+|+++++
T Consensus       269 -~dp~~~~lg~k~ie~~~~e~l~~~v~k~~dE~~gwK~~C~~~~C~KLFk~~eFV~KHi~~KH~e~v~~~~~  339 (358)
T 3ax1_A          269 -QDPLEVMAAKEKIDAAATEALDPHVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHTELVTELTT  339 (358)
T ss_dssp             -CCHHHHHHCHHHHHHHHHHHHGGGEEEEECSSSSEEEEECSSSCCCEESSHHHHHHHHHHHCHHHHHHHHH
T ss_pred             -cChHHHHhcCccHHHHHHHHHHHHHHHHhhcccccccCCCCCCcCcccCCHHHHHHHHHhccHHHHHHHHH
Confidence             3478899999999999999999999975 33   38999  699999999999999999999999998875

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=98.37  E-value=1.1e-06  Score=69.91  Aligned_cols=76  Identities=16%  Similarity=0.269  Sum_probs=62.5

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+++.|||++||++++.++|.+++++++....+.|. |+... +.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus        16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~   92 (99)
T 4fxv_A           16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG-HSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK   92 (99)
T ss_dssp             CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSC-CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCC-cccccEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            4567899999999999999999999999998888774 33322 3334799999999999999999999988875554

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.30  E-value=4.3e-06  Score=66.55  Aligned_cols=80  Identities=16%  Similarity=0.282  Sum_probs=65.2

Q ss_pred             CCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          26 PPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        26 ~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .++..-..+++|||.+||++++.++|.+++.+++....+.+-.   .++.-..|+|.|....++..|+..||+..+.+-.
T Consensus        14 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~   90 (109)
T 1x4a_A           14 IRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR   90 (109)
T ss_dssp             SSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence            3444455678999999999999999999999999998888832   2233457999999999999999999998888766


Q ss_pred             ccc
Q psy4687         106 LGA  108 (339)
Q Consensus       106 l~~  108 (339)
                      +..
T Consensus        91 l~V   93 (109)
T 1x4a_A           91 LRV   93 (109)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            653

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=3.7e-06  Score=65.78  Aligned_cols=82  Identities=11%  Similarity=0.222  Sum_probs=66.7

Q ss_pred             CCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          26 PPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        26 ~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .++.......+|||++||++++.++|.+++.+++....+.+--.. ..+.-..|+|.|....++..|+..||+..+.+-.
T Consensus         9 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   87 (100)
T 2do4_A            9 FRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENI   87 (100)
T ss_dssp             CCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred             cCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            344445567899999999999999999999999998888875222 4455678999999999999999999998888766


Q ss_pred             ccc
Q psy4687         106 LGA  108 (339)
Q Consensus       106 l~~  108 (339)
                      +..
T Consensus        88 l~v   90 (100)
T 2do4_A           88 IKV   90 (100)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=98.28  E-value=2.3e-06  Score=64.40  Aligned_cols=73  Identities=19%  Similarity=0.276  Sum_probs=61.6

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      |.+|||.+||++++.++|.+++.+++....+.+. ||. ..+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus         1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~   74 (83)
T 3md1_A            1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ-TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR   74 (83)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTT-TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred             CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCC-CCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence            6789999999999999999999999998888775 333 335567899999999999999999999888775554

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=3e-06  Score=65.32  Aligned_cols=76  Identities=16%  Similarity=0.278  Sum_probs=62.0

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ....++|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+
T Consensus        13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l   88 (94)
T 2e5h_A           13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI   88 (94)
T ss_dssp             CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence            3567899999999999999999999999999998885332223333479999999999999998999988776444

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=4.8e-06  Score=65.49  Aligned_cols=76  Identities=12%  Similarity=0.146  Sum_probs=64.6

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      -..+++|||.+||++++.++|.+++.+++....+.|.-.  ..+....|+|.|....++..|+..||+..+.+-.+..
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V   87 (103)
T 2d9p_A           12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV   87 (103)
T ss_dssp             CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence            357889999999999999999999999999888887643  3455568999999999999999999999888766653

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.26  E-value=4.1e-06  Score=64.54  Aligned_cols=78  Identities=19%  Similarity=0.175  Sum_probs=63.1

Q ss_pred             ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ....+.+|||.+||++++.++|.+++++++....+.+.--....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus        11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   88 (95)
T 2cqc_A           11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR   88 (95)
T ss_dssp             SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            345678999999999999999999999999998888852222234456899999999999999999999888775443

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.22  E-value=8.9e-06  Score=64.10  Aligned_cols=81  Identities=20%  Similarity=0.222  Sum_probs=65.7

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCC-CCCCCceEEEEEEecCcccHHHHHHhh-ccccccCc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADP-QPDRRWFRRGWVTFRRDVDIKEICWNL-NNIRLRDC  104 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP-~p~krf~R~GWV~f~~~~~~~~~~~~L-~~~~i~d~  104 (339)
                      .+..-..+.+|||.+||++++.++|.+++.+++....+.|--. ....+.-..|+|.|....++..|+..| |+..+.+-
T Consensus         8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~   87 (107)
T 2cph_A            8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR   87 (107)
T ss_dssp             SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred             ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence            3444467899999999999999999999999999999988532 223334457999999999999999999 88888876


Q ss_pred             ccc
Q psy4687         105 ELG  107 (339)
Q Consensus       105 el~  107 (339)
                      .+.
T Consensus        88 ~l~   90 (107)
T 2cph_A           88 RLV   90 (107)
T ss_dssp             BCE
T ss_pred             EEE
Confidence            554

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.22  E-value=8.8e-06  Score=64.04  Aligned_cols=80  Identities=10%  Similarity=0.158  Sum_probs=64.0

Q ss_pred             cccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          29 RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        29 ~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      ..-....+|||.+||++++.++|.+++.+++....+.+.-.....+.--.|+|.|....++..|+..||+..+.+-.+..
T Consensus        10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v   89 (105)
T 1x5u_A           10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV   89 (105)
T ss_dssp             CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred             ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence            33456789999999999999999999999999888887532222233337999999999999999999998888766543

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=98.21  E-value=5.2e-06  Score=64.10  Aligned_cols=78  Identities=21%  Similarity=0.261  Sum_probs=63.1

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .|..-....+|||.+||++++.++|.+++++++....+.|. |+.  .+.-..|+|.|....++..|+..||+..+.+-.
T Consensus         9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   86 (95)
T 2ywk_A            9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE--GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP   86 (95)
T ss_dssp             ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT--SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred             CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC--CCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence            34455567899999999999999999999999998888874 333  345568999999999999999989998877654


Q ss_pred             c
Q psy4687         106 L  106 (339)
Q Consensus       106 l  106 (339)
                      +
T Consensus        87 l   87 (95)
T 2ywk_A           87 I   87 (95)
T ss_dssp             C
T ss_pred             E
Confidence            4

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.21  E-value=8.2e-06  Score=63.80  Aligned_cols=75  Identities=19%  Similarity=0.228  Sum_probs=63.1

Q ss_pred             CCCcccCCCCeEEeeecCCCCCHHHHHHHHhhc--CCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          26 PPPRALHRTSSIFLRNLAPTITKAEVENLCKRY--SGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        26 ~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~--~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      ..+.....+++|||.+||++++.++|.+++.++  +-...+.++     |.   .|+|.|....++..|+..||+..+.+
T Consensus         7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g---~afV~f~~~~~A~~A~~~l~g~~~~g   78 (99)
T 2cpd_A            7 GDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RD---YAFVHFSNREDAVEAMKALNGKVLDG   78 (99)
T ss_dssp             CCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SS---EEEEEESSHHHHHHHHHHHSSEEETT
T ss_pred             ccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CC---eEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence            445556678999999999999999999999999  667777764     23   89999999999999999999998887


Q ss_pred             ccccc
Q psy4687         104 CELGA  108 (339)
Q Consensus       104 ~el~~  108 (339)
                      ..+..
T Consensus        79 ~~l~v   83 (99)
T 2cpd_A           79 SPIEV   83 (99)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            66653

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.19  E-value=6.5e-06  Score=63.77  Aligned_cols=71  Identities=18%  Similarity=0.259  Sum_probs=59.6

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEE-E-ecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRV-A-IADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~l-s-LSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+.+|||.+||++++.++|.+++.+++....+ . +.|+...+     |+|.|....++..|+..||+..+.+-.+.
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~-----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~   85 (96)
T 2e44_A           13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV-----VNVTYSSKDQARQALDKLNGFQLENFTLK   85 (96)
T ss_dssp             CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE-----EEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred             CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE-----EEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence            356899999999999999999999999998887 3 45554432     99999999999999999999888875554

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=98.17  E-value=8.1e-06  Score=64.35  Aligned_cols=82  Identities=11%  Similarity=0.131  Sum_probs=66.3

Q ss_pred             CCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          26 PPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        26 ~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      ..|..-..+++|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.
T Consensus        15 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   94 (106)
T 1p27_B           15 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP   94 (106)
T ss_dssp             CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred             CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence            34444566789999999999999999999999999988888522222344568999999999999999999998888765


Q ss_pred             cc
Q psy4687         106 LG  107 (339)
Q Consensus       106 l~  107 (339)
                      +.
T Consensus        95 l~   96 (106)
T 1p27_B           95 IS   96 (106)
T ss_dssp             CE
T ss_pred             EE
Confidence            54

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.17  E-value=1.2e-05  Score=63.26  Aligned_cols=78  Identities=13%  Similarity=0.219  Sum_probs=64.3

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .+.....+.+|||.+||++++.++|.+++.+++....+.|- |+..   .-..|+|.|....++..|+..||+..+.+-.
T Consensus         8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   84 (103)
T 2cq3_A            8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG---SKGFGFVTFENSADADRAREKLHGTVVEGRK   84 (103)
T ss_dssp             CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT---TCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            34444667899999999999999999999999998888874 3332   3457999999999999999999998888766


Q ss_pred             cc
Q psy4687         106 LG  107 (339)
Q Consensus       106 l~  107 (339)
                      +.
T Consensus        85 l~   86 (103)
T 2cq3_A           85 IE   86 (103)
T ss_dssp             CE
T ss_pred             EE
Confidence            54

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.17  E-value=7.3e-06  Score=63.82  Aligned_cols=76  Identities=16%  Similarity=0.172  Sum_probs=62.6

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      .+++|||++||++++.++|.+++.+++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V   82 (99)
T 1whw_A            7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV   82 (99)
T ss_dssp             SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence            4679999999999999999999999999988888532223334458999999999999999899998888766543

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.16  E-value=1.3e-05  Score=62.91  Aligned_cols=78  Identities=12%  Similarity=0.141  Sum_probs=63.9

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .+..-....+|||.+||++++.++|.+++.+++....+.|- |+...|   ..|+|.|....++..|+..|++..+.+-.
T Consensus         8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~   84 (103)
T 2cqi_A            8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSND---PYCFVEFYEHRDAAAALAAMNGRKILGKE   84 (103)
T ss_dssp             CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSC---CEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred             CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCC---CEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence            34445667999999999999999999999999999888874 333333   37999999999999999889998888765


Q ss_pred             cc
Q psy4687         106 LG  107 (339)
Q Consensus       106 l~  107 (339)
                      +.
T Consensus        85 l~   86 (103)
T 2cqi_A           85 VK   86 (103)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.15  E-value=6.6e-06  Score=64.66  Aligned_cols=78  Identities=13%  Similarity=0.231  Sum_probs=63.9

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      -..+.+|||.+||++++.++|.++|++++....+.|.-.....+.-..|+|.|....++..|+..||+..+.+..+..
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v   89 (103)
T 2cq0_A           12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV   89 (103)
T ss_dssp             CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence            356789999999999999999999999999888888532222344458999999999999999999998888766653

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=98.15  E-value=5.8e-06  Score=62.64  Aligned_cols=76  Identities=14%  Similarity=0.222  Sum_probs=61.5

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ....+|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus         4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   79 (87)
T 3bs9_A            4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR   79 (87)
T ss_dssp             --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence            3567899999999999999999999999998888853222334456899999999999999999999888775543

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.14  E-value=1.2e-05  Score=63.38  Aligned_cols=79  Identities=14%  Similarity=0.194  Sum_probs=62.5

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ++.+-....+|||.+||++++.++|.+++.++ |...+.+--.....+.-..|+|.|....++..|+ .||+..+.+-.+
T Consensus         8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~-gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l   85 (103)
T 2dng_A            8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL   85 (103)
T ss_dssp             CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred             CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhC-CceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence            44445567899999999999999999999999 7888877522222344458999999999999998 899988877665


Q ss_pred             c
Q psy4687         107 G  107 (339)
Q Consensus       107 ~  107 (339)
                      .
T Consensus        86 ~   86 (103)
T 2dng_A           86 R   86 (103)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=98.14  E-value=4.3e-06  Score=63.09  Aligned_cols=75  Identities=12%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ....+|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+
T Consensus         5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l   79 (85)
T 3mdf_A            5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI   79 (85)
T ss_dssp             CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence            356899999999999999999999999999888874222223344579999999999999998999988877544

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.14  E-value=1.3e-05  Score=62.91  Aligned_cols=78  Identities=14%  Similarity=0.155  Sum_probs=63.4

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      ...+.+|||.+||++++.++|.+++.+++....+.|--.....+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus        10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V   87 (103)
T 2dnm_A           10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV   87 (103)
T ss_dssp             CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred             CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence            345789999999999999999999999999988888522222233457999999999999999999999888866653

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=98.14  E-value=7.9e-06  Score=64.97  Aligned_cols=82  Identities=10%  Similarity=0.086  Sum_probs=65.8

Q ss_pred             CCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          26 PPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        26 ~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      ..|..-..+++|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+..
T Consensus        18 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~   97 (110)
T 1oo0_B           18 PGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT   97 (110)
T ss_dssp             CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence            34444566789999999999999999999999999999988422222234458999999999999999899998887765


Q ss_pred             cc
Q psy4687         106 LG  107 (339)
Q Consensus       106 l~  107 (339)
                      +.
T Consensus        98 l~   99 (110)
T 1oo0_B           98 IQ   99 (110)
T ss_dssp             CE
T ss_pred             EE
Confidence            54

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=98.13  E-value=1.6e-05  Score=63.72  Aligned_cols=78  Identities=13%  Similarity=0.223  Sum_probs=63.9

Q ss_pred             ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..-...+|||.+||++++.++|.+++.+++....+.|--.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus        11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   88 (115)
T 2dgo_A           11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR   88 (115)
T ss_dssp             CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            334678999999999999999999999999988888752222334556899999999999999999999888876654

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=98.13  E-value=3e-06  Score=64.30  Aligned_cols=75  Identities=9%  Similarity=0.197  Sum_probs=61.9

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.++|||.+||++++.++|.+++.+++....+.+- |+...++....|+|.|....++..|+..||+..+.+-.+.
T Consensus         3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   78 (88)
T 4a8x_A            3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT   78 (88)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEE
Confidence            46789999999999999999999999999888874 2222222445899999999999999999999988886654

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.13  E-value=1.6e-05  Score=62.70  Aligned_cols=79  Identities=11%  Similarity=0.181  Sum_probs=62.8

Q ss_pred             CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.......+|||.+||++++.++|.+++.+++....+.+--.....+.-..|||.|....++..|+.. ++..+.+-.+.
T Consensus        10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~   88 (105)
T 2dh8_A           10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID   88 (105)
T ss_dssp             CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred             cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence            34456678999999999999999999999999988887743222234445899999999999988877 88877776554

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=98.12  E-value=1.8e-05  Score=62.22  Aligned_cols=70  Identities=14%  Similarity=0.207  Sum_probs=60.4

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      ..+++|||.+||++++.++|.+++.+++....+.|- |+  ..+.-..|+|.|....++..|+..||+..+.+
T Consensus        13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g   83 (105)
T 2dnh_A           13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP--DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP   83 (105)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS--SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence            457899999999999999999999999998888875 33  33445689999999999999999999988876

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=98.12  E-value=1.3e-05  Score=61.39  Aligned_cols=75  Identities=20%  Similarity=0.245  Sum_probs=62.4

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      ...++|||.+||++++.++|.+++++++....+.+--  ...+.-..|+|.|....++..|+..|++..+.+-.+..
T Consensus         6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v   80 (92)
T 2dgv_A            6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV   80 (92)
T ss_dssp             SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence            4568999999999999999999999999888887753  22234457999999999999999999998888866553

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=98.11  E-value=8.4e-06  Score=63.37  Aligned_cols=74  Identities=16%  Similarity=0.222  Sum_probs=61.9

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +++|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus         2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   75 (96)
T 2x1f_A            2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLK   75 (96)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence            57899999999999999999999999999988853322234445899999999999999999999888876554

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=98.11  E-value=4.9e-06  Score=67.53  Aligned_cols=80  Identities=18%  Similarity=0.305  Sum_probs=57.6

Q ss_pred             CCCCCCCCCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc
Q psy4687          19 GGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN   98 (339)
Q Consensus        19 ~~~~~~~~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~   98 (339)
                      ||++.+-..|.+--..+.|||.+||++++.++|.+++.+++....+.|--.       -.|+|.|....++..|+..||+
T Consensus         1 gg~~~~r~gpp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g   73 (115)
T 3beg_B            1 GGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDN   73 (115)
T ss_dssp             ----------------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCC
Confidence            444444444444456789999999999999999999999999888888422       5799999999999999999999


Q ss_pred             ccccCcc
Q psy4687          99 IRLRDCE  105 (339)
Q Consensus        99 ~~i~d~e  105 (339)
                      ..+.+-.
T Consensus        74 ~~~~gr~   80 (115)
T 3beg_B           74 TKFRSHE   80 (115)
T ss_dssp             CBCCCTT
T ss_pred             CEECCcE
Confidence            8888755

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.11  E-value=1.8e-05  Score=62.74  Aligned_cols=79  Identities=13%  Similarity=0.262  Sum_probs=63.8

Q ss_pred             CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhc------ccc
Q psy4687          28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLN------NIR  100 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~------~~~  100 (339)
                      |.....+.+|||.+||++++.++|.+++.+++....+.|. |+. ..+.-..|+|.|....++..|+..+|      +..
T Consensus         9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~   87 (111)
T 1x4h_A            9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD-TEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK   87 (111)
T ss_dssp             CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSS-SCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred             CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence            4444567899999999999999999999999999888885 333 22334579999999999999999998      887


Q ss_pred             ccCcccc
Q psy4687         101 LRDCELG  107 (339)
Q Consensus       101 i~d~el~  107 (339)
                      +.+-.+.
T Consensus        88 ~~g~~l~   94 (111)
T 1x4h_A           88 LDGRQLK   94 (111)
T ss_dssp             SSSCEEE
T ss_pred             EcCEEEE
Confidence            7775554

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=98.10  E-value=1.7e-05  Score=65.21  Aligned_cols=80  Identities=11%  Similarity=0.117  Sum_probs=63.7

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      .......+.+|||.+||++++.++|.+++.+++....+.+--.....+.-..|+|.|....++..|+..||+..+.+-.+
T Consensus        56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l  135 (140)
T 2ku7_A           56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI  135 (140)
T ss_dssp             SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred             CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            33444567899999999999999999999999999998884322223445689999999999999998899887776443

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.09  E-value=1.5e-05  Score=61.47  Aligned_cols=75  Identities=15%  Similarity=0.223  Sum_probs=62.0

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..++|||.+||++++.++|.+++.+++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   78 (95)
T 2dnz_A            4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMR   78 (95)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence            467999999999999999999999999988888753222223344899999999999999999999988876654

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=1.3e-05  Score=61.59  Aligned_cols=68  Identities=21%  Similarity=0.412  Sum_probs=60.2

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      ..++|||.+||++++.++|.+++.+++....+.+.     |.   .|+|.|....++..|+..||+..+.+..+..
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g---~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v   74 (90)
T 2dnq_A            7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KN---YGFVHIEDKTAAEDAIRNLHHYKLHGVNINV   74 (90)
T ss_dssp             CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TT---EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CC---EEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence            45799999999999999999999999999888886     34   6999999999999999999998888876653

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=98.08  E-value=1.8e-05  Score=63.58  Aligned_cols=78  Identities=10%  Similarity=0.125  Sum_probs=63.3

Q ss_pred             cccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          29 RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        29 ~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ..-..+++|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..++..||+..+.+-.+
T Consensus        35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l  112 (118)
T 2khc_A           35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL  112 (118)
T ss_dssp             CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence            334456899999999999999999999999999988886322223445689999999999999998899988877544

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.08  E-value=1.5e-05  Score=63.56  Aligned_cols=80  Identities=14%  Similarity=0.181  Sum_probs=62.6

Q ss_pred             CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCee--------EEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhcc
Q psy4687          28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFL--------RVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNN   98 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~--------~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~   98 (339)
                      +..-...++|||.+||++++.++|.+++.+++...        .+.|- |+. ..+.-..|+|.|....++..|+..||+
T Consensus         9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g   87 (113)
T 2cpe_A            9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE-TGKPKGDATVSYEDPPTAKAAVEWFDG   87 (113)
T ss_dssp             CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTT-TCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred             cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCC-CCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence            34446678999999999999999999999998776        35553 222 223345799999999999999999999


Q ss_pred             ccccCccccc
Q psy4687          99 IRLRDCELGA  108 (339)
Q Consensus        99 ~~i~d~el~~  108 (339)
                      ..+.+-.+..
T Consensus        88 ~~~~g~~l~V   97 (113)
T 2cpe_A           88 KDFQGSKLKV   97 (113)
T ss_dssp             CEETTEECEE
T ss_pred             CccCCCEEEE
Confidence            8888766553

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.07  E-value=1.5e-05  Score=62.87  Aligned_cols=79  Identities=16%  Similarity=0.236  Sum_probs=62.5

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .+.+-....+|||.+||++++.++|.+++.+++ ...+.|- |+....+.-..|+|.|....++..|+ .||+..+.+-.
T Consensus         8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~   85 (104)
T 1wi8_A            8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR   85 (104)
T ss_dssp             CCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred             CCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence            344445668999999999999999999999997 8888874 33321334457999999999999998 89998887766


Q ss_pred             cc
Q psy4687         106 LG  107 (339)
Q Consensus       106 l~  107 (339)
                      +.
T Consensus        86 l~   87 (104)
T 1wi8_A           86 IR   87 (104)
T ss_dssp             CE
T ss_pred             EE
Confidence            54

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.07  E-value=1.4e-05  Score=62.48  Aligned_cols=74  Identities=26%  Similarity=0.406  Sum_probs=62.7

Q ss_pred             CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.......+|||.+||++++.++|.+++.+++....+.+.-   .|   ..|+|.|....++..|+..|++..+.+..+.
T Consensus         9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---~k---g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~   82 (99)
T 2cpj_A            9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---DK---GFGFIRLETRTLAEIAKVELDNMPLRGKQLR   82 (99)
T ss_dssp             SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---TT---TEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred             CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---CC---CEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence            34456678999999999999999999999999988888752   23   3799999999999999999999888876654

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=98.06  E-value=1.1e-05  Score=63.52  Aligned_cols=70  Identities=16%  Similarity=0.261  Sum_probs=60.4

Q ss_pred             ccCCCCeEEeeecCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          30 ALHRTSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        30 ~lh~t~slfIk~IpP-~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ....+++|||.+||+ +++.++|.+++++++....+.++     |   ..|+|.|....++..|+..||+..+.+..+.
T Consensus        18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~---g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   88 (97)
T 2xnq_A           18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----N---AFGFIQFDNPQSVRDAIEXESQEMNFGKKLI   88 (97)
T ss_dssp             -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----S---SEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred             CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----C---CEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            334568999999999 99999999999999999999995     3   4799999999999999999999888775554

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.06  E-value=1.3e-05  Score=62.79  Aligned_cols=76  Identities=17%  Similarity=0.283  Sum_probs=62.7

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+.+|||.+||++++.++|.+++.+++....+.+--.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus        10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   85 (102)
T 1x5s_A           10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR   85 (102)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            4568999999999999999999999999998888853222223344899999999999999989999988876654

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=98.05  E-value=1.6e-05  Score=62.62  Aligned_cols=70  Identities=19%  Similarity=0.308  Sum_probs=61.0

Q ss_pred             ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ....+++|||.+||++++.++|.+++.+++....+.+.     |.   .|+|.|....++..|+..||+..+.+-.+.
T Consensus         7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   76 (103)
T 2dgu_A            7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KD---YAFIHFDERDGAVKAMEEMNGKDLEGENIE   76 (103)
T ss_dssp             CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SS---CEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CC---EEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence            34567899999999999999999999999999998885     33   799999999999999999999888876654

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.04  E-value=2.7e-05  Score=62.13  Aligned_cols=74  Identities=20%  Similarity=0.211  Sum_probs=62.4

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+++|||.+||++++.++|.+++.+++-...+.|. |+  ..+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus        13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   87 (114)
T 2do0_A           13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK--DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH   87 (114)
T ss_dssp             CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT--TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence            347899999999999999999999999988877774 33  245567899999999999999999999888876654

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=98.04  E-value=2.8e-05  Score=61.16  Aligned_cols=72  Identities=7%  Similarity=0.155  Sum_probs=58.5

Q ss_pred             ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccc
Q psy4687          30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRL  101 (339)
Q Consensus        30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i  101 (339)
                      .-..+.+|||.+||++++.++|.+++.+++....+.|--.....+.-..|+|.|....++..|+..||+..+
T Consensus         9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~   80 (106)
T 2dgp_A            9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT   80 (106)
T ss_dssp             CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence            345678999999999999999999999999988888743222223334799999999999999999998776

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=1.7e-05  Score=61.11  Aligned_cols=69  Identities=19%  Similarity=0.348  Sum_probs=60.3

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      ..+++|||.+||++++.++|.+++++++....+.+.     +.   .|+|.|....++..|+..||+..+.+-.+..
T Consensus         8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V   76 (92)
T 2dgt_A            8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KD---YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV   76 (92)
T ss_dssp             CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SS---EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CC---EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence            456899999999999999999999999998888885     23   7999999999999999999998888766653

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.04  E-value=8.4e-06  Score=63.36  Aligned_cols=76  Identities=13%  Similarity=0.227  Sum_probs=62.6

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCC--CCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQP--DRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p--~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      .+++|||.+||++++.++|.+++.+++....+.+. |+..  ..+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V   82 (98)
T 2cpf_A            4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV   82 (98)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence            35789999999999999999999999998888875 3331  2245568999999999999999999998888766653

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=98.04  E-value=1.8e-05  Score=63.41  Aligned_cols=79  Identities=9%  Similarity=0.147  Sum_probs=63.8

Q ss_pred             ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      .-..+++|||.+||++++.++|.+++.+++....+.|--.....+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus        21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V   99 (115)
T 2cpz_A           21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV   99 (115)
T ss_dssp             CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence            3345689999999999999999999999999888877422222344458999999999999999999998888766653

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=98.04  E-value=2.3e-05  Score=61.17  Aligned_cols=79  Identities=13%  Similarity=0.152  Sum_probs=63.2

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeE--------EEec-CCCCCCCceEEEEEEecCcccHHHHHHhhc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLR--------VAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLN   97 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~--------lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~   97 (339)
                      .+.+...+++|||.+||++++.++|.+++++++....        +.+. |+. ..+.-..|+|.|....++..|+..||
T Consensus         6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~-~g~~~G~afV~f~~~~~a~~Ai~~l~   84 (99)
T 2la6_A            6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRE-TGKLKGEATVSFDDPPSAKAAIDWFD   84 (99)
T ss_dssp             SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTT-TCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCC-CCCeeeEEEEEECCHHHHHHHHHHhC
Confidence            4455567899999999999999999999999998776        5553 332 23445689999999999999998899


Q ss_pred             cccccCccc
Q psy4687          98 NIRLRDCEL  106 (339)
Q Consensus        98 ~~~i~d~el  106 (339)
                      +..+.+-.+
T Consensus        85 g~~~~g~~l   93 (99)
T 2la6_A           85 GKEFSGNPI   93 (99)
T ss_dssp             TCBSSSSBC
T ss_pred             CCEeCCcEE
Confidence            988877444

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.03  E-value=1.9e-05  Score=63.05  Aligned_cols=65  Identities=15%  Similarity=0.271  Sum_probs=57.9

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      .....|||.+||++++.++|.+++.+++....+.|--.       ..|+|.|....++..|+..||+..+.+
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g   77 (108)
T 1x4c_A           13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS   77 (108)
T ss_dssp             SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence            56789999999999999999999999999888887432       579999999999999999999988877

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.03  E-value=1.8e-05  Score=61.92  Aligned_cols=74  Identities=15%  Similarity=0.225  Sum_probs=57.6

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      ...+++|||.+||++++.++|.+++..+   ..+.+- |+.. .+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V   86 (102)
T 2fc8_A           12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRET-GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL   86 (102)
T ss_dssp             SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSS-CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCC-CCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence            3567899999999999999999999855   344432 3332 244458999999999999999999998888766543

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=98.02  E-value=1.8e-05  Score=64.38  Aligned_cols=80  Identities=11%  Similarity=0.142  Sum_probs=65.4

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .|..-..+++|||.+||++++.++|.+++.+++....+.|- |+. ..+.-..|+|+|....++..|+..||+..+.+-.
T Consensus        15 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   93 (126)
T 3ex7_B           15 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRR-TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP   93 (126)
T ss_dssp             CBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTT-TSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred             CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence            34444567899999999999999999999999999988884 333 2233457999999999999999999999888766


Q ss_pred             cc
Q psy4687         106 LG  107 (339)
Q Consensus       106 l~  107 (339)
                      +.
T Consensus        94 l~   95 (126)
T 3ex7_B           94 IS   95 (126)
T ss_dssp             CE
T ss_pred             EE
Confidence            54

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.02  E-value=3.8e-05  Score=61.36  Aligned_cols=77  Identities=13%  Similarity=0.225  Sum_probs=63.5

Q ss_pred             CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ...-...++|||.+||++++.++|.+++.+++....+.|- |+  ..+.-..|+|.|....++..|+..||+..+++..+
T Consensus        19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~   96 (114)
T 1x5o_A           19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS--SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG   96 (114)
T ss_dssp             SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS--SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred             cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence            3344566899999999999999999999999998888874 33  44555689999999999999999999988876544

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=98.02  E-value=1.9e-05  Score=60.02  Aligned_cols=72  Identities=18%  Similarity=0.210  Sum_probs=59.8

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+|||.+||++++.++|.+++++++....+.+. |+. ..+....|+|.|....++..|+ .+|+..+.+-.+.
T Consensus         6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~   78 (89)
T 3ucg_A            6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKF-SGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIK   78 (89)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCS-SSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC-CCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEE
Confidence            4689999999999999999999999998888774 332 2344568999999999999998 8999888876654

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.02  E-value=2.2e-05  Score=60.83  Aligned_cols=70  Identities=11%  Similarity=0.107  Sum_probs=59.8

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+.+|||.+||++++.++|.+++.+++....+ +-|+...+    .|+|.|....++..|+. ||+..+.+-.+.
T Consensus         6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~----~afV~f~~~~~a~~ai~-l~g~~~~g~~l~   75 (94)
T 2e5g_A            6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV----FAIVEMGDVGAREAVLS-QSQHSLGGHRLR   75 (94)
T ss_dssp             TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC----EEEEEESSHHHHHHHHT-CSCCEETTEECC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc----EEEEEECCHHHHHHHHh-cCCeEECCEEEE
Confidence            345799999999999999999999999999987 66666654    89999999998998888 998888775554

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.02  E-value=4e-05  Score=61.49  Aligned_cols=81  Identities=12%  Similarity=0.164  Sum_probs=62.9

Q ss_pred             CCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          26 PPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        26 ~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      ..+..-...++|||.+||++++.++|.+++.+++....+.|.-.....+.-..|+|.|....++..|+..+++ .+.+-.
T Consensus         9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~   87 (116)
T 2cqd_A            9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK   87 (116)
T ss_dssp             CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred             CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence            3444556779999999999999999999999999998888863322223334899999999988888887776 666655


Q ss_pred             cc
Q psy4687         106 LG  107 (339)
Q Consensus       106 l~  107 (339)
                      +.
T Consensus        88 l~   89 (116)
T 2cqd_A           88 AN   89 (116)
T ss_dssp             CE
T ss_pred             EE
Confidence            44

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.01  E-value=3.5e-05  Score=59.94  Aligned_cols=70  Identities=13%  Similarity=0.271  Sum_probs=60.0

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc--Ccccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR--DCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~--d~el~  107 (339)
                      ..+++|||.+||++++.++|.+++.+++....+.+.-.   |.   .|+|.|....++..|+..||+..+.  +..+.
T Consensus        15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g---~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~   86 (97)
T 1why_A           15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DS---FAYIQYESLDAAQAACAKMRGFPLGGPDRRLR   86 (97)
T ss_dssp             CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SC---CEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CC---EEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence            44689999999999999999999999999999888632   33   7999999999999999999998888  65554

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=98.01  E-value=1.7e-05  Score=62.54  Aligned_cols=77  Identities=17%  Similarity=0.283  Sum_probs=64.0

Q ss_pred             CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      +.....+++|||.+||++++.++|.+++.+++....+.|- |+  ..+....|+|.|....++..|+..||+..+.+-.+
T Consensus        23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l  100 (107)
T 3ulh_A           23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR--SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM  100 (107)
T ss_dssp             -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT--TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence            4445678999999999999999999999999998888774 33  44556789999999999999999999988876444

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=98.01  E-value=2.3e-05  Score=65.10  Aligned_cols=78  Identities=21%  Similarity=0.207  Sum_probs=63.6

Q ss_pred             cccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          29 RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        29 ~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .....+.+|||.+||++++.++|.+++.+++....+.+- |+.. .+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus        41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t-g~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~  119 (129)
T 2kxn_B           41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS-RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR  119 (129)
T ss_dssp             SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSS-SCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            334557899999999999999999999999998888874 3332 23345899999999999999999999888876554

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=98.01  E-value=8.9e-06  Score=65.47  Aligned_cols=73  Identities=11%  Similarity=0.221  Sum_probs=61.7

Q ss_pred             cccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          29 RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        29 ~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      ..-..+++|||.+||++++.++|.+++.+++....+.+.     |   ..|+|.|....++..|+..||+..+.+-.+..
T Consensus        26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----k---g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V   97 (108)
T 2jvo_A           26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----N---GFAFVEFEEAESAAKAIEEVHGKSFANQPLEV   97 (108)
T ss_dssp             --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----T---TEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----C---CEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence            334567899999999999999999999999999888887     3   37999999999999999999999887766654


Q ss_pred             c
Q psy4687         109 I  109 (339)
Q Consensus       109 ~  109 (339)
                      .
T Consensus        98 ~   98 (108)
T 2jvo_A           98 V   98 (108)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=98.00  E-value=2.7e-05  Score=62.52  Aligned_cols=81  Identities=14%  Similarity=0.168  Sum_probs=64.8

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      -+..-..+.+|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..+|+..+.+-.+
T Consensus        19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l   98 (108)
T 2jrs_A           19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM   98 (108)
T ss_dssp             SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred             cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence            34444566899999999999999999999999998888875222223444589999999999999999999988887655


Q ss_pred             c
Q psy4687         107 G  107 (339)
Q Consensus       107 ~  107 (339)
                      .
T Consensus        99 ~   99 (108)
T 2jrs_A           99 K   99 (108)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.99  E-value=4.9e-05  Score=59.59  Aligned_cols=74  Identities=15%  Similarity=0.206  Sum_probs=61.8

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhh-cCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhcccc-ccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKR-YSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIR-LRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~-~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~-i~d~el~  107 (339)
                      ..+.+|||.+||++++.++|.+++.+ ++....+.|. |+  ..+.-..|+|.|....++..|+..|++.. +.+-.+.
T Consensus         7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~--~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~   83 (104)
T 2dhg_A            7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ--TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR   83 (104)
T ss_dssp             SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT--TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC--CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence            45689999999999999999999999 9988888774 33  33455689999999999999999899888 8776554

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=2.5e-05  Score=59.94  Aligned_cols=69  Identities=19%  Similarity=0.330  Sum_probs=60.3

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      ....+|||.+||++++.++|.+++++++....+.+.     +.   .|+|.|....++..|+..||+..+.+-.+..
T Consensus         7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v   75 (90)
T 2dnp_A            7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KD---YAFVHMEKEADAKAAIAQLNGKEVKGKRINV   75 (90)
T ss_dssp             CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SS---CEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CC---EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence            456789999999999999999999999998888886     23   7999999999999999999998888766553

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.98  E-value=1.2e-05  Score=62.03  Aligned_cols=75  Identities=16%  Similarity=0.162  Sum_probs=59.7

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEE-EecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRV-AIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~l-sLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..++|||.+||++++.++|.+++.+++....+ .+.-.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus         4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   79 (96)
T 1x5t_A            4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT   79 (96)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            35789999999999999999999999887666 5532212223345899999999999999998999888776654

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=97.98  E-value=2.2e-05  Score=66.37  Aligned_cols=81  Identities=15%  Similarity=0.266  Sum_probs=65.9

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .+...-.+++|||.+||++++.++|.+++.+++....+.|. |+. ..+.--.|+|+|....++..|+..||+..|.+-.
T Consensus        32 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~  110 (156)
T 1h2v_Z           32 QEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKM-KKTACGFCFVEYYSRADAENAMRYINGTRLDDRI  110 (156)
T ss_dssp             -CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE
T ss_pred             hcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence            34445567899999999999999999999999999888884 333 2344458999999999999999999999888766


Q ss_pred             ccc
Q psy4687         106 LGA  108 (339)
Q Consensus       106 l~~  108 (339)
                      +..
T Consensus       111 l~V  113 (156)
T 1h2v_Z          111 IRT  113 (156)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            653

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.97  E-value=1.7e-05  Score=63.93  Aligned_cols=68  Identities=18%  Similarity=0.254  Sum_probs=59.3

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+.|||++||++++.++|.++|.+++....+.|.   +.|.|   |+|.|....++..|+..||+..+.+..+.
T Consensus        10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~---~~~g~---afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   77 (111)
T 1whx_A           10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP---EGGIT---AIVEFLEPLEARKAFRHLAYSKFHHVPLY   77 (111)
T ss_dssp             EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---SSSSC---EEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe---CCCCE---EEEEeCCHHHHHHHHHHhCCCEECCeEEE
Confidence            5789999999999999999999999999999886   24554   99999999999999999999888775543

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=97.97  E-value=2.7e-05  Score=63.25  Aligned_cols=74  Identities=12%  Similarity=0.203  Sum_probs=62.2

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+.+|||.+||++++.++|.+++++++....+.+.-.. ..+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus         6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~   79 (116)
T 2fy1_A            6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIK   79 (116)
T ss_dssp             SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            35789999999999999999999999998888885332 334456899999999999999999999888876654

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.97  E-value=2.5e-05  Score=60.99  Aligned_cols=73  Identities=10%  Similarity=0.084  Sum_probs=61.5

Q ss_pred             cCCCCeEEeeecCCCCCHHHHH----HHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVE----NLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele----~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      ....++|||.+||++++.++|.    +++.+++....+.+- |+.. |.|   |+|.|....++..|+..||+..+.+-.
T Consensus         6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~---afV~f~~~~~A~~Ai~~l~g~~~~gr~   81 (96)
T 2dgx_A            6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLK---AVVQMENLQDAIGAVNSLHRYKIGSKK   81 (96)
T ss_dssp             CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCC---EEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeE---EEEEECCHHHHHHHHHHhCCCEECCeE
Confidence            3456789999999999999999    999999999988885 3433 554   999999999999999999998888755


Q ss_pred             cc
Q psy4687         106 LG  107 (339)
Q Consensus       106 l~  107 (339)
                      +.
T Consensus        82 l~   83 (96)
T 2dgx_A           82 IL   83 (96)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=97.95  E-value=2.2e-05  Score=63.87  Aligned_cols=77  Identities=14%  Similarity=0.257  Sum_probs=63.0

Q ss_pred             ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..-.+++|||.+||++++.++|.+++++++....+.+--.. ..+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus        31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~  107 (124)
T 2kt5_A           31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD  107 (124)
T ss_dssp             CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence            34566899999999999999999999999998888874222 334445899999999999999988999888775543

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.95  E-value=3.4e-05  Score=60.12  Aligned_cols=71  Identities=14%  Similarity=0.269  Sum_probs=56.8

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCee-EEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFL-RVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~-~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ...+++|||.+||++++.++|.+++.+++... .+.. +  ..+   ..|+|.|....++..|+..||+..+.+-.+.
T Consensus        16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~-~--~~~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   87 (97)
T 2e5j_A           16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTW-Q--GPR---RRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR   87 (97)
T ss_dssp             SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEE-E--TTT---TEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred             CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEc-C--CCC---cEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence            34568999999999999999999999998763 2222 1  223   3699999999999999999999988876654

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.94  E-value=1.5e-05  Score=62.28  Aligned_cols=77  Identities=12%  Similarity=0.127  Sum_probs=62.7

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      ....+|||.+||++++.++|.+++.+++....+.|.-.....+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus        10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V   86 (102)
T 2cqb_A           10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV   86 (102)
T ss_dssp             CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence            35689999999999999999999999998888887422222234457999999999999999899998888766653

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=97.94  E-value=3e-05  Score=60.66  Aligned_cols=69  Identities=14%  Similarity=0.254  Sum_probs=59.3

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..++|||.+||++++.++|.+++.+++....+.+.   ..|.   .|+|.|....++..|+..||+..+.+-.+.
T Consensus        26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g---~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   94 (101)
T 2la4_A           26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKG---CCFIKYDTHEQAAVCIVALANFPFQGRNLR   94 (101)
T ss_dssp             SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTT---EEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred             CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCC---EEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence            35789999999999999999999999998888886   3344   699999999999999989999888775554

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=97.94  E-value=1e-05  Score=65.50  Aligned_cols=71  Identities=18%  Similarity=0.323  Sum_probs=58.5

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ++.|||++||++++.++|.+++++++....+-|- |+...   -..|+|.|....++..|+..|++..+.+-.+.
T Consensus         5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~---kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~   76 (115)
T 4f25_A            5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS---KGYGFVHFETQEAAERAIEKMNGMLLNDRKVF   76 (115)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEE---EEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCC---CceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            5679999999999999999999999998877663 33322   23699999999999999999999888875543

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=5.9e-05  Score=58.73  Aligned_cols=75  Identities=12%  Similarity=0.234  Sum_probs=60.1

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+.+|||.+||++++.++|.+++.+++....+.+--.....+.-..|+|.|....++..|+. +++..+.+-.+.
T Consensus         8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~   82 (99)
T 2dgs_A            8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE   82 (99)
T ss_dssp             SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence            356799999999999999999999999999888885221122233479999999999998887 898888776554

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.93  E-value=1.5e-05  Score=60.35  Aligned_cols=73  Identities=16%  Similarity=0.308  Sum_probs=59.4

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .+.+|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.
T Consensus         4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   76 (85)
T 1x4e_A            4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM   76 (85)
T ss_dssp             CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence            4679999999999999999999999999988887532222233347999999999999999999988777633

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.92  E-value=1e-05  Score=63.38  Aligned_cols=76  Identities=12%  Similarity=0.177  Sum_probs=61.8

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ....+|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus         6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   81 (104)
T 1p1t_A            6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR   81 (104)
T ss_dssp             HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred             CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence            3457899999999999999999999999888887752222233445899999999999999988999888776554

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=97.92  E-value=4.8e-05  Score=60.57  Aligned_cols=73  Identities=16%  Similarity=0.298  Sum_probs=61.4

Q ss_pred             CcccCCCCeEEeeecCCC-CCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          28 PRALHRTSSIFLRNLAPT-ITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~-isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      +.+...+++|||.+||++ ++.++|.+++.+++....+.+     .|   ..|+|.|....++..|+..||+..+.+-.+
T Consensus        21 ~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~---g~afV~f~~~~~A~~A~~~l~g~~~~g~~l   92 (110)
T 1wf1_A           21 NDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HK---GYAFVQYSNERHARAAVLGENGRVLAGQTL   92 (110)
T ss_dssp             CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ET---TEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eC---CEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence            333344689999999999 999999999999999888888     23   369999999999999999999988887666


Q ss_pred             cc
Q psy4687         107 GA  108 (339)
Q Consensus       107 ~~  108 (339)
                      ..
T Consensus        93 ~V   94 (110)
T 1wf1_A           93 DI   94 (110)
T ss_dssp             CE
T ss_pred             EE
Confidence            53

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=97.92  E-value=4.2e-05  Score=61.14  Aligned_cols=72  Identities=18%  Similarity=0.318  Sum_probs=60.0

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+.+|||.+||++++.++|.+++++++....+.+.-.-..+   ..|+|.|....++..|+..||+..+.+-.+.
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~---g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   78 (115)
T 3lqv_A            7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR---GTAYVVYEDIFDAKNAVDHLSGFNVSNRYLV   78 (115)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTT---TCEEEEESSHHHHHHHHHHHTTCBSSSCBCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCC---cEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence            46799999999999999999999999999888884211123   3699999999999999999999988876654

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=97.90  E-value=1.5e-05  Score=62.76  Aligned_cols=79  Identities=15%  Similarity=0.190  Sum_probs=58.7

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCC-CCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQ-PDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~-p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .+.....+.+|||.+||++++.++|.+++++++ ...+.+.--. ...+.-..|+|.|....++..|+ .+|+..+.+-.
T Consensus        12 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~   89 (100)
T 2j76_E           12 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR   89 (100)
T ss_dssp             --------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred             CcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence            445556779999999999999999999999998 8888875221 23344457999999999999998 89998887755


Q ss_pred             cc
Q psy4687         106 LG  107 (339)
Q Consensus       106 l~  107 (339)
                      +.
T Consensus        90 l~   91 (100)
T 2j76_E           90 IR   91 (100)
T ss_dssp             CC
T ss_pred             EE
Confidence            54

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=97.90  E-value=2.8e-05  Score=59.40  Aligned_cols=72  Identities=17%  Similarity=0.292  Sum_probs=59.4

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ++|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|.... +..++..||+..+.+-.+.
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~   73 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIR   73 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCS
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEE
Confidence            47999999999999999999999999988888532222344568999999998 8888889999888876554

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.89  E-value=8.2e-05  Score=58.30  Aligned_cols=68  Identities=16%  Similarity=0.194  Sum_probs=54.6

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHH
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICW   94 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~   94 (339)
                      .++....+++|||.+||++++.++|.+++.+++....+.|--.....+.-..|+|.|....++..|+.
T Consensus         8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~   75 (103)
T 2cqg_A            8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS   75 (103)
T ss_dssp             CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred             CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH
Confidence            55666778999999999999999999999999998888774222223444589999999988887765

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=97.88  E-value=3.4e-05  Score=66.15  Aligned_cols=80  Identities=10%  Similarity=0.096  Sum_probs=63.8

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .|.....+++|||.+||++++.++|.+++.+++....+.|- |+.. .+.-..|+|.|....++..|+..||+..+.+-.
T Consensus        65 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~  143 (165)
T 1rk8_A           65 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT-GFSKGYALVEYETHKQALAAKEALNGAEIMGQT  143 (165)
T ss_dssp             -CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT-SSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCC-CcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            34444567889999999999999999999999999888885 3322 234458999999999999999999998888766


Q ss_pred             cc
Q psy4687         106 LG  107 (339)
Q Consensus       106 l~  107 (339)
                      +.
T Consensus       144 l~  145 (165)
T 1rk8_A          144 IQ  145 (165)
T ss_dssp             CE
T ss_pred             EE
Confidence            54

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.87  E-value=5.7e-05  Score=60.84  Aligned_cols=74  Identities=12%  Similarity=0.168  Sum_probs=59.0

Q ss_pred             CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccc--cccCcc
Q psy4687          28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNI--RLRDCE  105 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~--~i~d~e  105 (339)
                      +.....+..|||++||++++.++|.++|.+++....+.+..   .|.   .|+|.|....++..|+..|++.  .+.+-.
T Consensus         9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---~kg---~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~   82 (104)
T 1wex_A            9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---FKR---QALVEFENIDSAKECVTFAADVPVYIAGQQ   82 (104)
T ss_dssp             CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---TTT---EEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred             CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---CCC---EEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence            33445578999999999999999999999999999988752   344   6999999999888888877643  356655


Q ss_pred             cc
Q psy4687         106 LG  107 (339)
Q Consensus       106 l~  107 (339)
                      +.
T Consensus        83 l~   84 (104)
T 1wex_A           83 AF   84 (104)
T ss_dssp             CE
T ss_pred             EE
Confidence            43

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.87  E-value=3.2e-05  Score=62.46  Aligned_cols=68  Identities=4%  Similarity=0.016  Sum_probs=56.6

Q ss_pred             CCCeEEeeecCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccc--ccCccc
Q psy4687          33 RTSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIR--LRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP-~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~--i~d~el  106 (339)
                      ....|||++||+ +++.++|.+++..++....+.|-   ..|.|   |+|.|....++..|+..||+..  +.+-.+
T Consensus        14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~---~~kg~---aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l   84 (102)
T 1x4d_A           14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL---NKINE---AFIEMATTEDAQAAVDYYTTTPALVFGKPV   84 (102)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC---SSSSC---EEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE---cCCCE---EEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence            568999999999 99999999999999999999884   34554   9999999999998888887543  555444

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=4e-05  Score=59.55  Aligned_cols=72  Identities=13%  Similarity=0.131  Sum_probs=59.2

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCee-EEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFL-RVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~-~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .+.+|||.+||++++.++|.+++.+++... .+.+- |+.. .+.-..|+|.|....++..|+..||+..+.+..
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   81 (99)
T 2div_A            8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLT-GIPAGYCFVEFADLATAEKCLHKINGKPLPGAT   81 (99)
T ss_dssp             SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSS-CCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCC-CCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence            468999999999999999999999999877 77664 3332 233457999999999999999889998887755

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.86  E-value=3.9e-05  Score=61.41  Aligned_cols=74  Identities=14%  Similarity=0.234  Sum_probs=61.4

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      -..+++|||.+||++++.++|.+++++++....+.+. |+..   .-..|+|.|....++..|+..||+..+.+..+.
T Consensus        26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~  100 (109)
T 2err_A           26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG---SKGFGFVTFENSADADRAREKLHGTVVEGRKIE  100 (109)
T ss_dssp             TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB---CTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC---CceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            3466899999999999999999999999998888874 3322   334799999999999999999999888875554

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=97.84  E-value=3.6e-05  Score=60.18  Aligned_cols=69  Identities=19%  Similarity=0.243  Sum_probs=59.0

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      ++|||.+||++++.++|.+++++++....+.+.-.  .+.   .|+|.|....++..|+..|++..+.+..+..
T Consensus         1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V   69 (101)
T 2hvz_A            1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPG---FAFVEFEDPRDAEDAVRGLDGKVICGSRVRV   69 (101)
T ss_dssp             CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSS---EEEEECSSHHHHHHHHHHHHHSCSSSCCCEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCC---EEEEEECCHHHHHHHHHHHCCCeECCcEEEE
Confidence            57999999999999999999999999888887533  333   7999999999999999999998888766543

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=97.84  E-value=1.5e-05  Score=61.66  Aligned_cols=73  Identities=16%  Similarity=0.342  Sum_probs=60.1

Q ss_pred             CCCCeEEeeecCCCCCHHHHH----HHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVE----NLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele----~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+++|||.+||++++.++|.    +++.+++....+.+......+   ..|+|.|....++..|+..||+..+.+..+.
T Consensus         6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~---g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   82 (97)
T 1nu4_A            6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMR---GQAFVIFKEVSSATNALRSMQGFPFYDKPMR   82 (97)
T ss_dssp             CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHT---TCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcC---cEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence            456899999999999999999    999999999888875211222   3699999999999999999999888775554

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.84  E-value=2.2e-05  Score=60.92  Aligned_cols=75  Identities=12%  Similarity=0.108  Sum_probs=57.9

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEE-EecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRV-AIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~l-sLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ...+.|||.+||++++.++|.+++.+++....+ -+.++. ..+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus        13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~   88 (98)
T 2cqp_A           13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE-KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK   88 (98)
T ss_dssp             CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS-SSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence            456899999999999999999999999765322 122222 223456899999999999999999999888775554

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=97.83  E-value=4.1e-05  Score=63.25  Aligned_cols=77  Identities=18%  Similarity=0.312  Sum_probs=63.1

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAI  109 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~~  109 (339)
                      ..+.+|||.+||++++.++|.+++++++....+.+- |+. ..+.-..|+|.|....++..|+..||+..+.+-.+...
T Consensus        40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~  117 (139)
T 1u6f_A           40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE-TRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA  117 (139)
T ss_dssp             TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETT-TTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence            345799999999999999999999999998888774 333 22344589999999999999999999988888666543

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=97.83  E-value=3.5e-05  Score=64.45  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=64.0

Q ss_pred             CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      |.....+++|||.+||++++.++|.+++++++....+.|--.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus        41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~  120 (135)
T 2lea_A           41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR  120 (135)
T ss_dssp             CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred             CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            44445678999999999999999999999999998888853222223334799999999999999888999888876654

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=97.82  E-value=2.6e-05  Score=63.22  Aligned_cols=73  Identities=16%  Similarity=0.285  Sum_probs=61.2

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+|||.+||++++.++|.+++++++....+.| -|+... +---.|+|+|....++..|+..||+..+.+-.+.
T Consensus         6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg-~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~   79 (110)
T 3s8s_A            6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTR-KHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH   79 (110)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCC-ceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            468999999999999999999999999888876 355432 3345799999999999999999999988875554

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.82  E-value=3e-05  Score=57.26  Aligned_cols=71  Identities=13%  Similarity=0.194  Sum_probs=55.9

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ++|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+..++ ..+.+-.+
T Consensus         1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l   71 (77)
T 1uaw_A            1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI   71 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence            479999999999999999999999988877774222222334589999999999999888777 76666443

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=97.82  E-value=8.1e-05  Score=59.06  Aligned_cols=74  Identities=9%  Similarity=0.085  Sum_probs=60.9

Q ss_pred             CCCCeEEeeecCCCC------CHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc-
Q psy4687          32 HRTSSIFLRNLAPTI------TKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC-  104 (339)
Q Consensus        32 h~t~slfIk~IpP~i------sr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~-  104 (339)
                      ..+++|||.+||+++      +.++|.+++++++....+.+- . ...+--..|+|+|....++..|+..||+..+.+- 
T Consensus        13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~-~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~   90 (105)
T 2nlw_A           13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-E-EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH   90 (105)
T ss_dssp             SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-C-BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred             CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-C-CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence            346799999999999      889999999999999998886 2 2223334899999999999999999999888874 


Q ss_pred             ccc
Q psy4687         105 ELG  107 (339)
Q Consensus       105 el~  107 (339)
                      .+.
T Consensus        91 ~l~   93 (105)
T 2nlw_A           91 TFR   93 (105)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            443

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=97.81  E-value=3.2e-05  Score=59.53  Aligned_cols=72  Identities=11%  Similarity=0.068  Sum_probs=57.0

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcC--CeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYS--GFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~--GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+|||.+||++++.++|.+++++++  ....+.+. |+... +.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus         2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g-~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~   76 (90)
T 3p5t_L            2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG-QSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV   76 (90)
T ss_dssp             --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTC-CEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCE
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCC-ccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEE
Confidence            4799999999999999999999999  77777664 44332 3345799999999999999999999888876654

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=97.79  E-value=1.6e-05  Score=61.28  Aligned_cols=73  Identities=12%  Similarity=0.095  Sum_probs=56.6

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ..++|||++||++++.++|.+++.+++....+.+ .|+ ...+.-..|+|.|....++..|+..||+..+.+-.+
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l   87 (95)
T 2ek1_A           14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN-EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV   87 (95)
T ss_dssp             -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence            3589999999999999999999999976542222 222 223455789999999999999998899988877544

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=97.78  E-value=4.2e-05  Score=59.60  Aligned_cols=68  Identities=15%  Similarity=0.238  Sum_probs=59.2

Q ss_pred             CCCCeEEeeecCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP-~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+++|||.+||+ +++.++|.+++++++....+.++     |   ..|+|.|....++..|+..|++..+.+-.+.
T Consensus         8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~---g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   76 (96)
T 2kvi_A            8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----N---AFGFIQFDNPQSVRDAIECESQEMNFGKKLI   76 (96)
T ss_dssp             -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----T---TEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred             CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----C---CEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence            4578999999999 99999999999999999998885     3   3799999999999999989999888776554

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=97.77  E-value=4.8e-05  Score=56.11  Aligned_cols=69  Identities=16%  Similarity=0.274  Sum_probs=54.3

Q ss_pred             eEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        36 slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .|||.+||++++.++|.+++++++....+.+.-.....+.-..|+|.|....++..|+. +++..+.+-.
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~   69 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKM   69 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCC
T ss_pred             CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEE
Confidence            48999999999999999999999988888774222223444589999999988887765 7777776643

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.76  E-value=8.3e-05  Score=59.28  Aligned_cols=73  Identities=18%  Similarity=0.263  Sum_probs=57.9

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCe----eEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGF----LRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF----~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ...+++|||.+||++++.++|.+++.+++..    ..+-+.    ..+.-..|+|.|....++..|+..||+..+.+-.+
T Consensus        22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l   97 (115)
T 2cpx_A           22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL   97 (115)
T ss_dssp             CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence            3456899999999999999999999999765    333333    22233479999999999999999999988877665


Q ss_pred             c
Q psy4687         107 G  107 (339)
Q Consensus       107 ~  107 (339)
                      .
T Consensus        98 ~   98 (115)
T 2cpx_A           98 V   98 (115)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.76  E-value=7.3e-05  Score=59.41  Aligned_cols=70  Identities=7%  Similarity=0.202  Sum_probs=60.4

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ...++|||.+||++++.++|.+++.+++....+.|.-.   |   ..|+|.|....++..|+..|++..+.+-.+.
T Consensus        23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~---g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   92 (109)
T 1x4g_A           23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---K---GYSFVRFSTHESAAHAIVSVNGTTIEGHVVK   92 (109)
T ss_dssp             SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---T---TEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---C---CEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence            45689999999999999999999999999988888633   3   3799999999999999989999888876654

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=97.76  E-value=9.8e-05  Score=61.68  Aligned_cols=72  Identities=10%  Similarity=0.281  Sum_probs=58.3

Q ss_pred             CCCeEEeeecCCCCCHHHHH----HHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVE----NLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele----~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..++|||++||++++.++|.    +++.+++....+.+..-...|.   .|+|.|....++..|+..||+..+.+-.+.
T Consensus        28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG---~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~  103 (127)
T 2a3j_A           28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSG---KAYIVFATQESAQAFVEAFQGYPFQGNPLV  103 (127)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCC---CEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCC---EEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence            36789999999999998865    6899999998888743223344   499999999999999999999888775543

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.75  E-value=6.9e-05  Score=56.46  Aligned_cols=69  Identities=12%  Similarity=0.276  Sum_probs=58.0

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhh-ccccccCccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL-NNIRLRDCEL  106 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L-~~~~i~d~el  106 (339)
                      ..+.+|||.+||++++.++|.+++.+++....+.+.-   .|   ..|+|.|....++..|+..| ++..+.+-.+
T Consensus        10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~k---g~afV~f~~~~~A~~a~~~l~~~~~~~g~~l   79 (85)
T 2ytc_A           10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQ---QCAFIQFATRQAAEVAAEKSFNKLIVNGRRL   79 (85)
T ss_dssp             SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GG---TEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred             CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CC---CEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence            5678999999999999999999999999988888763   23   36999999999999998888 7777766443

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=97.74  E-value=0.00011  Score=55.71  Aligned_cols=70  Identities=16%  Similarity=0.345  Sum_probs=55.7

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      ....+|||.+||++++.++|.+++.+++....+.+- |+. ..+....|+|.|....++..|+. +++..+.+
T Consensus         9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g   79 (87)
T 3s7r_A            9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPN-TGRSRGFGFILFKDAASVEKVLD-QKEHRLDG   79 (87)
T ss_dssp             SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-TCCEEEEEEEEESSTHHHHHHHH-SSCEEETT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCC-CCccccEEEEEECCHHHHHHHHH-hCCCEECC
Confidence            456799999999999999999999999998888874 333 23455689999999998888874 45555554

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=97.74  E-value=6.3e-05  Score=56.65  Aligned_cols=68  Identities=10%  Similarity=0.106  Sum_probs=57.0

Q ss_pred             CeEEeeecCCCC------CHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          35 SSIFLRNLAPTI------TKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        35 ~slfIk~IpP~i------sr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      ++|||.+||+++      +.++|.+++++++....+.+- + ...+.-..|+|.|....++..|+..||+..+.+-
T Consensus         2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~   75 (81)
T 2krb_A            2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-E-EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ   75 (81)
T ss_dssp             CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-C-BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-C-CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence            689999999999      889999999999999998886 2 2223334799999999999999988999888764

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=97.74  E-value=6.3e-05  Score=56.81  Aligned_cols=68  Identities=15%  Similarity=0.260  Sum_probs=55.7

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhc----C-------CeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRY----S-------GFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIR  100 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~----~-------GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~  100 (339)
                      ....+|||.+||++++.++|.++++++    +       -...+.+.-+   |   ..|+|.|....++..|+ .||+..
T Consensus         4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---k---g~afV~f~~~~~a~~A~-~l~g~~   76 (87)
T 2hzc_A            4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---K---NFAFLEFRSVDETTQAM-AFDGII   76 (87)
T ss_dssp             GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---S---SEEEEEESSHHHHHHHG-GGTTCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---C---cEEEEEcCCHHHHHHHH-hcCCCE
Confidence            356799999999999999999999999    4       4666666422   3   47999999999999999 999988


Q ss_pred             ccCccc
Q psy4687         101 LRDCEL  106 (339)
Q Consensus       101 i~d~el  106 (339)
                      +.+-.+
T Consensus        77 ~~g~~l   82 (87)
T 2hzc_A           77 FQGQSL   82 (87)
T ss_dssp             ETTEEC
T ss_pred             ECCeEE
Confidence            877554

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=97.73  E-value=7.3e-05  Score=60.52  Aligned_cols=67  Identities=12%  Similarity=0.233  Sum_probs=55.9

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccc--ccCcc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIR--LRDCE  105 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~--i~d~e  105 (339)
                      ....|||++||++++.++|.+++.+++.+..+.+-   +.|+   .|||.|....++..|+..+++..  +.+-.
T Consensus        20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~---~~kg---~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~   88 (100)
T 3r27_A           20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM---PKKR---QALVEFEDVLGACNAVNYAADNQIYIAGHP   88 (100)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---TTTT---EEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE---cCCC---EEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence            35689999999999999999999999999998884   3454   69999999999999988888654  44533

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=97.72  E-value=0.00022  Score=61.03  Aligned_cols=76  Identities=12%  Similarity=0.148  Sum_probs=62.6

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+.+|||++||++++.++|.++|++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+..+.
T Consensus       112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  187 (198)
T 2yh0_A          112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL  187 (198)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            4568999999999999999999999999988887742222334456799999999999999999999888776554

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.72  E-value=5.5e-05  Score=60.50  Aligned_cols=72  Identities=21%  Similarity=0.231  Sum_probs=59.7

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.+|||.+||++++.++|.+++.+++....+.|- |+.. .+.-..|+|.|....++..|+ .||+..+.+-.+.
T Consensus        25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~   97 (114)
T 2cq4_A           25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNS-RRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPII   97 (114)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCS-SSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCC-CccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEE
Confidence            3699999999999999999999999999988884 3332 223347999999999999999 9999888876654

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=97.72  E-value=0.00015  Score=61.00  Aligned_cols=76  Identities=16%  Similarity=0.170  Sum_probs=62.2

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+..|||.+||++++.++|.+++.+++....+.|.-.....+.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus        68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  143 (158)
T 2kn4_A           68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR  143 (158)
T ss_dssp             CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            4578999999999999999999999999998888853222223344799999999999999989999888776554

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=97.71  E-value=7.2e-05  Score=60.58  Aligned_cols=73  Identities=11%  Similarity=0.157  Sum_probs=59.8

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.+|||.+||++++.++|.+++.+++....+.+--.....+.-..|+|.|....++..++ .+|+..+.+-.+.
T Consensus        36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~  108 (124)
T 2jwn_A           36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIK  108 (124)
T ss_dssp             HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEE
Confidence            479999999999999999999999999888877422122344568999999999999888 7999888776654

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=97.70  E-value=0.00011  Score=60.90  Aligned_cols=74  Identities=15%  Similarity=0.245  Sum_probs=61.0

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .++|||++||++++.++|.+++++++....+.+---....+.-..|+|.|....++..|+..|++..+.+..+.
T Consensus         2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~   75 (167)
T 1fxl_A            2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK   75 (167)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEE
Confidence            57899999999999999999999999988887742222334556899999999999999888999888776554

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=97.70  E-value=0.00016  Score=60.63  Aligned_cols=75  Identities=19%  Similarity=0.251  Sum_probs=62.1

Q ss_pred             CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +......++|||.+||++++.++|.+++++++....+.+.--  .|.   .|+|.|....++..|+..||+..+.+-.+.
T Consensus        67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g---~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  141 (150)
T 2i2y_A           67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPG---FAFVEFEDPRDAADAVRELDGRTLCGCRVR  141 (150)
T ss_dssp             SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCS---EEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred             ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCc---EEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence            334456789999999999999999999999999998888522  233   799999999999999989999888775543

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.69  E-value=0.00011  Score=58.02  Aligned_cols=74  Identities=11%  Similarity=0.144  Sum_probs=58.1

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCC-eeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhc--cccccCccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSG-FLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLN--NIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~G-F~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~--~~~i~d~el  106 (339)
                      ..++|||.+||++++.++|.+++.+++. ...+.+- .+....+--..|+|.|....++..|+..|+  +..+.+-.+
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l   84 (109)
T 2dis_A            7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI   84 (109)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence            3578999999999999999999999986 9998885 222222333479999999999999988886  466666444

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=97.68  E-value=4.1e-05  Score=59.58  Aligned_cols=72  Identities=11%  Similarity=0.115  Sum_probs=53.3

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcC-CeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhc-cccccCccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYS-GFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLN-NIRLRDCEL  106 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~-GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~-~~~i~d~el  106 (339)
                      ++.|||++||++++.++|.+++++++ ....+.|. |+... +--..|+|.|....++..|+..++ +..+.|-.+
T Consensus         1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~-~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i   75 (91)
T 2lxi_A            1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSG-QSRGFAFVEFSHLQDATRWMEANQHSLNILGQKV   75 (91)
T ss_dssp             CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSC-CCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCC-CcCceEEEEecCHHHHHHHHHhcCCCeEECCEEE
Confidence            57899999999999999999999998 46666553 44321 222369999999998888887664 445666444

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.68  E-value=3.7e-05  Score=59.21  Aligned_cols=69  Identities=12%  Similarity=0.174  Sum_probs=55.9

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCC-eeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc-ccccCccccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSG-FLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN-IRLRDCELGA  108 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~G-F~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~-~~i~d~el~~  108 (339)
                      ..++|||.+||++++.++|.+++.+++. ...+.+    ..+.   .|+|.|....++..|+..||+ ..+.+..+..
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~----~~~g---~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v   77 (93)
T 2cqh_A            7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL----LKSG---YAFVDYPDQNWAIRAIETLSGKVELHGKIMEV   77 (93)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE----EETT---EEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE----cCCC---EEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence            4578999999999999999999999987 333333    1233   699999999999999999999 8888866653

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.68  E-value=5.8e-05  Score=62.15  Aligned_cols=71  Identities=11%  Similarity=0.143  Sum_probs=57.7

Q ss_pred             cCCCCeEEeeecCCC-CCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc--ccccCcccc
Q psy4687          31 LHRTSSIFLRNLAPT-ITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN--IRLRDCELG  107 (339)
Q Consensus        31 lh~t~slfIk~IpP~-isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~--~~i~d~el~  107 (339)
                      ...+..|||++||++ ++.++|.++|.+++....+.|.   ..|.   .|+|.|....++..|+..|++  ..+.+-.+.
T Consensus        22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---~~kg---~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~   95 (112)
T 1x4f_A           22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---RMKS---QAFIEMETREDAMAMVDHCLKKALWFQGRCVK   95 (112)
T ss_dssp             SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---TTTT---EEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred             CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---cCCC---EEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence            344789999999998 9999999999999999999985   3344   599999999988888887764  346665443

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.68  E-value=0.00014  Score=56.67  Aligned_cols=73  Identities=14%  Similarity=0.191  Sum_probs=56.9

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      ..+++|||.+||++++.++|.+++.+++-. ++. -+  ...+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v-~~~-~~--~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v   85 (101)
T 2fc9_A           13 GESKTLVLSNLSYSATEETLQEVFEKATFI-KVP-QN--QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL   85 (101)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHCSSCSEE-ECC-BC--SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE-EEE-EC--CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence            457899999999999999999999997543 221 22  22344458999999999999999889998888766543

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=97.66  E-value=0.00016  Score=59.83  Aligned_cols=74  Identities=20%  Similarity=0.326  Sum_probs=60.5

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      ..+.+|||++||++++.++|.+++.+++....+.+.-.....+--..|+|.|....++..|+..||+..+.+..
T Consensus        86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~  159 (167)
T 1fxl_A           86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT  159 (167)
T ss_dssp             GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred             CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence            35678999999999999999999999999888877422222334567999999999999999999998887644

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.66  E-value=0.00019  Score=55.80  Aligned_cols=73  Identities=14%  Similarity=0.311  Sum_probs=60.1

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ..+....+++|||.++  +++.++|.+++.+++....+.+.   ..|.   .|+|.|....++..|+..||+..+.+-.+
T Consensus         8 ~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g---~afV~f~~~~~a~~Ai~~l~g~~~~g~~l   79 (97)
T 1x5p_A            8 ERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRN---CAFVTYEKMESADQAVAELNGTQVESVQL   79 (97)
T ss_dssp             CCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTT---EEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred             ccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCC---EEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence            3344456789999995  99999999999999999999884   3344   59999999999999998999988877555


Q ss_pred             c
Q psy4687         107 G  107 (339)
Q Consensus       107 ~  107 (339)
                      .
T Consensus        80 ~   80 (97)
T 1x5p_A           80 K   80 (97)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=97.65  E-value=4e-05  Score=59.24  Aligned_cols=71  Identities=13%  Similarity=0.198  Sum_probs=56.2

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ....+|||.+||++++.++|.+++.+++....+     ....+.-..|+|.|....++..|+..|++..+.+-.+.
T Consensus        14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   84 (96)
T 1fjc_A           14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS   84 (96)
T ss_dssp             TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            356899999999999999999999998544433     22223345899999999999999998999888775554

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.64  E-value=9.5e-05  Score=56.63  Aligned_cols=71  Identities=13%  Similarity=0.098  Sum_probs=58.6

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ....|||++||++++.++|.+++..+ +...+.|--. ...+.-..|+|.|....++..|+. +|+..+.+-.+
T Consensus         9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i   79 (91)
T 2dgw_A            9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI   79 (91)
T ss_dssp             CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred             CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence            45789999999999999999999999 8887776422 344556789999999999999988 99887776444

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.0002  Score=59.14  Aligned_cols=75  Identities=19%  Similarity=0.265  Sum_probs=61.2

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ...+.+|||++||++++.++|.+++++++....+.+- |+.. .+--..|+|.|....++..|+..||+..+.+..+
T Consensus        84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i  159 (166)
T 3md3_A           84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT-GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL  159 (166)
T ss_dssp             CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT-CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence            3457799999999999999999999999998888774 3322 2333479999999999999999999988877544

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.60  E-value=0.00024  Score=56.93  Aligned_cols=71  Identities=11%  Similarity=0.199  Sum_probs=56.5

Q ss_pred             ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhc--cccccCccc
Q psy4687          30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLN--NIRLRDCEL  106 (339)
Q Consensus        30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~--~~~i~d~el  106 (339)
                      ....+..|||++||++++.++|.++|.+++....+.+-.   .|.   .|+|.|....++..|+..++  +..+.+-.+
T Consensus        11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~---~kg---~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l   83 (101)
T 2cq1_A           11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK---GKN---QAFLELATEEAAITMVNYYSAVTPHLRNQPI   83 (101)
T ss_dssp             CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET---TTT---EEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---CCC---EEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence            335578999999999999999999999999998887742   244   59999999988888887664  344555444

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=97.59  E-value=0.0002  Score=59.59  Aligned_cols=72  Identities=18%  Similarity=0.320  Sum_probs=60.0

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      ..+.+|||++||++++.++|.+++++++....+.+.-.....+--..|+|.|....++..|+..||+..+.+
T Consensus        87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g  158 (168)
T 1b7f_A           87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG  158 (168)
T ss_dssp             TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred             CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence            456899999999999999999999999998888874332233444579999999999999999999988866

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=97.59  E-value=0.00023  Score=61.76  Aligned_cols=76  Identities=8%  Similarity=0.229  Sum_probs=63.0

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+.+|||++||++++.++|.++|++++....+.+--.....+--..|+|.|....++..|+..||+..+.+..+.
T Consensus       123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~  198 (216)
T 2qfj_A          123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR  198 (216)
T ss_dssp             TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCE
T ss_pred             CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEE
Confidence            4557999999999999999999999999999888853222333445899999999999999999999988886654

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=97.59  E-value=0.00019  Score=62.86  Aligned_cols=74  Identities=15%  Similarity=0.255  Sum_probs=62.0

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+++|||.+||++++.++|.+++.+++....+.|.-.. ..+.-..|+|.|....++..|+..+|+..+.+-.+.
T Consensus        87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~  160 (177)
T 2f3j_A           87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD  160 (177)
T ss_dssp             TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence            45799999999999999999999999999888885322 344556899999999999999989999888775544

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=97.58  E-value=0.00018  Score=57.58  Aligned_cols=77  Identities=17%  Similarity=0.258  Sum_probs=61.9

Q ss_pred             cCCCCeEEeeecCCCCCHHHHH---HHHhhcCCeeEEEecCCCC---CCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVE---NLCKRYSGFLRVAIADPQP---DRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele---~~ck~~~GF~~lsLSDP~p---~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      ....+.|||.+||++++.++|.   +++.+++....+.+--...   .++---.|+|+|....++..|+..||+..+.+-
T Consensus        12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr   91 (111)
T 2cpi_A           12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR   91 (111)
T ss_dssp             CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence            3567899999999999999999   9999999998888832211   112234899999999999999999999888775


Q ss_pred             ccc
Q psy4687         105 ELG  107 (339)
Q Consensus       105 el~  107 (339)
                      .+.
T Consensus        92 ~l~   94 (111)
T 2cpi_A           92 TLK   94 (111)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=97.57  E-value=0.00017  Score=62.01  Aligned_cols=73  Identities=5%  Similarity=0.062  Sum_probs=60.5

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcC--CeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYS--GFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~--GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+|||.+||++++.++|.+++.+++  ....+.+ .|+... +.--.|+|.|....++..|+..||+..+.+-.+.
T Consensus        55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg-~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~  130 (156)
T 3n9u_C           55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANG-QSKGYAEVVVASENSVHKLLELLPGKVLNGEKVD  130 (156)
T ss_dssp             -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTC-CEEEEEEEEESCHHHHHHHHHHSTTCEETTEECE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCC-ccceEEEEEECCHHHHHHHHHHcCCCEECCeEeE
Confidence            47999999999999999999999999  7888876 455433 3345799999999999999999999888876554

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=97.56  E-value=0.00024  Score=59.44  Aligned_cols=74  Identities=12%  Similarity=0.166  Sum_probs=60.2

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      .+.+|||++||++++.++|.++|++++....+.+.-.....+.-..|+|.|....++..|+..||+..+.+-.+
T Consensus        93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l  166 (172)
T 2g4b_A           93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL  166 (172)
T ss_dssp             TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEEC
T ss_pred             CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEE
Confidence            46899999999999999999999999998888774221222334579999999999999999999988876443

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.55  E-value=0.00025  Score=57.84  Aligned_cols=69  Identities=13%  Similarity=0.212  Sum_probs=56.6

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc--ccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN--IRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~--~~i~d~el~  107 (339)
                      ..+.|||++||++++.++|.+++.+++.+..+.|--   .|.   .|+|.|....++..|+..+++  ..+.+-.+.
T Consensus        15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~---~kG---faFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~   85 (105)
T 1sjq_A           15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK---GKN---QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY   85 (105)
T ss_dssp             CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET---TTT---EEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc---CCC---EEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence            357899999999999999999999999999988752   344   699999999988888887763  556665543

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.54  E-value=0.00021  Score=57.14  Aligned_cols=72  Identities=10%  Similarity=0.208  Sum_probs=58.3

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ...+|||.+||++++.++|.+++++++....+.|. |+.  .+.--.|+|+|....++..|+. +++..+.+-.+.
T Consensus        10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~--g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~   82 (103)
T 1s79_A           10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH--KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLL   82 (103)
T ss_dssp             GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT--TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC--CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEE
Confidence            35789999999999999999999999999888885 333  3444579999999988888876 777777765443

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=97.53  E-value=0.00016  Score=53.18  Aligned_cols=68  Identities=13%  Similarity=0.275  Sum_probs=52.3

Q ss_pred             eEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        36 slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .|||.+||++++.++|.+++++++....+.+. |+. ..+.-..|+|.|....++..|+.. ++..+.+-.
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~   69 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK-TNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSK   69 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCC-CSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-CCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence            48999999999999999999999988888774 222 123334799999999888887753 666555533

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.53  E-value=0.00032  Score=58.60  Aligned_cols=68  Identities=15%  Similarity=0.125  Sum_probs=58.3

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      ..++..|||.+||..++.++|.++|.+++.+..+.+-+.   ..|  .|||.|....++..|+..||+..|.+
T Consensus        22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf--~aFVef~~~~~A~~A~~~LnG~~i~g   89 (124)
T 2e5i_A           22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGI--QAMVEFESVLCAQKAKAALNGADIYA   89 (124)
T ss_dssp             CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSE--EEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred             CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCC--EEEEEECCHHHHHHHHHHhCCCEecC
Confidence            355567889999999999999999999999999998541   233  69999999999999999999998876

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=97.52  E-value=5e-05  Score=59.32  Aligned_cols=73  Identities=19%  Similarity=0.269  Sum_probs=54.3

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ...+|||.+||++++.++|.+++.+++......+-|+... +.-..|+|.|....++..|+. +|+..+.+-.+.
T Consensus        16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g-~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~   88 (101)
T 1fj7_A           16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG-TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK   88 (101)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEE-TTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCC-CcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEE
Confidence            4679999999999999999999999875433222222211 112369999999999999987 999888775554

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=97.52  E-value=0.00023  Score=58.67  Aligned_cols=77  Identities=16%  Similarity=0.196  Sum_probs=59.2

Q ss_pred             cccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeE--EEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccc----cc
Q psy4687          29 RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLR--VAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNI----RL  101 (339)
Q Consensus        29 ~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~--lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~----~i  101 (339)
                      ..--.+..|||++||++++.++|.+++.+++....  +-| -|+... +--..|+|.|... ++..++..||+.    .+
T Consensus        18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg-~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~   95 (131)
T 2m2b_A           18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQ-LNRGFAFIQLSTI-EAAQLLQILQALHPPLTI   95 (131)
T ss_dssp             CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSS-SBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred             CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCC-CcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence            33355679999999999999999999999988854  444 344322 2234799999999 999999999998    77


Q ss_pred             cCcccc
Q psy4687         102 RDCELG  107 (339)
Q Consensus       102 ~d~el~  107 (339)
                      .+-.+.
T Consensus        96 ~gr~l~  101 (131)
T 2m2b_A           96 DGKTIN  101 (131)
T ss_dssp             GGCCCC
T ss_pred             CCEEEE
Confidence            775554

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=97.52  E-value=0.00013  Score=57.71  Aligned_cols=66  Identities=18%  Similarity=0.294  Sum_probs=52.1

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCC--eeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSG--FLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNI   99 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~G--F~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~   99 (339)
                      .-.+|||++|||++|.++|.+++++++.  ...+-| -||...+ ---.|+|.|....++..|+..||+.
T Consensus         8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~-srG~aFV~f~~~~~A~~Ai~~lng~   76 (95)
T 2lkz_A            8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQ-NRGFAFVQLSSAMDASQLLQILQSL   76 (95)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSS-CSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred             ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCC-CceEeEEEECCHHHHHHHHHHhcCC
Confidence            3478999999999999999999999985  445554 3554322 1236999999999999999999875

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=97.51  E-value=0.00017  Score=57.71  Aligned_cols=73  Identities=15%  Similarity=0.249  Sum_probs=55.7

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+.+|||.+||++++.++|.+++.+++....+.+- |+.. .+.-..|+|.|....++..|+..+ +..+.+-.+.
T Consensus        24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t-g~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~   97 (109)
T 2rs2_A           24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT-KRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID   97 (109)
T ss_dssp             --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTT-CCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCC-CCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence            35789999999999999999999999999888874 3322 233347999999999888887765 4666665443

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=97.51  E-value=0.00025  Score=55.40  Aligned_cols=70  Identities=23%  Similarity=0.405  Sum_probs=56.5

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ..++|||.+||++++.++|.+++++++....+.+- |+  ..+.-..|+|.|....++..|+.  ++..+.+..+
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l   78 (102)
T 2xs2_A            8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR--TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKL   78 (102)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT--TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC--CCCccceEEEEECCHHHHHHHHh--CCCeECCEEE
Confidence            45789999999999999999999999998888774 33  44566789999999999988876  5555555443

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=97.50  E-value=0.00017  Score=60.04  Aligned_cols=75  Identities=17%  Similarity=0.234  Sum_probs=60.5

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+++|||++||++++.++|.+++++++....+.+---....+.-..|+|.|....++..|+..+++..+.+..+.
T Consensus         2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~   76 (168)
T 1b7f_A            2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLK   76 (168)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEE
Confidence            357899999999999999999999999988888752111222334799999999999999888999888776654

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.50  E-value=0.00019  Score=57.43  Aligned_cols=76  Identities=12%  Similarity=0.185  Sum_probs=58.3

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ...+.+|||.+||++++.++|.+++.+++....+.|--.....+.-..|+|.|....++..|+.. ++..+.+-.+.
T Consensus        24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~   99 (116)
T 1x4b_A           24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVE   99 (116)
T ss_dssp             HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEE
T ss_pred             cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEE
Confidence            34458999999999999999999999999888887743222223334899999999888888765 77777665544

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.46  E-value=0.00047  Score=54.47  Aligned_cols=70  Identities=13%  Similarity=0.082  Sum_probs=55.0

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeE-EEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLR-VAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~-lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      .....|||++||++++.++|.++++.++.... +.|.-- ...+.-..|+|.|....++..|+.. ++..+.+
T Consensus        13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g   83 (104)
T 1wg5_A           13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGH   83 (104)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence            45689999999999999999999999988765 655422 3334445899999999988888765 6666655

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=97.46  E-value=8.2e-05  Score=56.96  Aligned_cols=67  Identities=21%  Similarity=0.307  Sum_probs=57.0

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+|||.+||++++.++|.+++.++ +...+.+.   ..|   ..|+|.|....++..|+..||+..+.+-.+.
T Consensus         5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~   71 (88)
T 1wg1_A            5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNK---RTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI   71 (88)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGG---TEEEECCSCHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCC---cEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence            5689999999999999999999999 88888872   333   4699999999999999999999888775543

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.00036  Score=57.56  Aligned_cols=70  Identities=14%  Similarity=0.220  Sum_probs=59.1

Q ss_pred             eEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        36 slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +|||++||++++.++|.+++++++....+.+- |+.  .+.-..|+|.|....++..|+..+++..+.+..+.
T Consensus         2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~   72 (166)
T 3md3_A            2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN--NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVK   72 (166)
T ss_dssp             EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC---CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC--CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeE
Confidence            69999999999999999999999998888773 443  34567899999999999999989999888776554

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=97.44  E-value=9.7e-05  Score=58.20  Aligned_cols=73  Identities=15%  Similarity=0.099  Sum_probs=59.6

Q ss_pred             CCeEEeeecCC------CCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccC-cc
Q psy4687          34 TSSIFLRNLAP------TITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD-CE  105 (339)
Q Consensus        34 t~slfIk~IpP------~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d-~e  105 (339)
                      .++|||.+||+      +++.++|.+++.+++....+.|- |+... +--..|+|+|....++..|+..||+..+.+ -.
T Consensus         6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg-~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~   84 (100)
T 3ns6_A            6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATG-KTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR   84 (100)
T ss_dssp             GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTT-EECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred             CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCC-ccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence            46899999999      99999999999999998888773 33321 222479999999999999999999988887 55


Q ss_pred             cc
Q psy4687         106 LG  107 (339)
Q Consensus       106 l~  107 (339)
                      +.
T Consensus        85 l~   86 (100)
T 3ns6_A           85 LF   86 (100)
T ss_dssp             CE
T ss_pred             EE
Confidence            54

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=97.41  E-value=0.00037  Score=63.38  Aligned_cols=74  Identities=11%  Similarity=0.078  Sum_probs=59.5

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcC--CeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYS--GFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~--GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ++++|||.+||++++.++|.+++++++  -...+.|- |+... +---.|+|+|....++..|+..||+..|.+-.+.
T Consensus        67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg-~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~  143 (229)
T 3q2s_C           67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG-QSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV  143 (229)
T ss_dssp             --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTC-CEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred             CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCC-ccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence            567899999999999999999999999  78888763 44332 3335799999999999999988999888775554

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=97.41  E-value=0.00037  Score=61.60  Aligned_cols=73  Identities=16%  Similarity=0.228  Sum_probs=58.7

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      +.+++|||.+||++++.++|.+++++++-...+-|- |+... +--..|+|.|....++..|+..+++..+.+-.
T Consensus        13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~   86 (213)
T 4f02_A           13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYAYVNFQQPADAERALDTMNFDVIKGKP   86 (213)
T ss_dssp             --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCC-CccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence            446789999999999999999999999988887763 55443 44568999999999999998888877665543

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=97.40  E-value=0.00046  Score=59.81  Aligned_cols=77  Identities=9%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..-..++|||++||++++.++|.+++++++....+.+- |+.. .+.-..|+|.|....++..|+..|++..+.+-.+.
T Consensus        24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~  101 (216)
T 2qfj_A           24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT-MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK  101 (216)
T ss_dssp             HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC--CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCE
T ss_pred             ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC-CccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEE
Confidence            33345799999999999999999999999998888883 3322 23446899999999999999988999888775553

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=97.39  E-value=0.00053  Score=57.16  Aligned_cols=71  Identities=11%  Similarity=0.169  Sum_probs=58.6

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      ..+..|||++||++++.++|.+++++++....+.+.-. +..+--..|+|.|....++..|+..||+..+.+
T Consensus        93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~  163 (175)
T 3nmr_A           93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME  163 (175)
T ss_dssp             GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred             CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence            45689999999999999999999999999888877422 222334579999999999999999999876654

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=97.38  E-value=0.00025  Score=60.00  Aligned_cols=77  Identities=12%  Similarity=0.261  Sum_probs=60.7

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC--c
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD--C  104 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d--~  104 (339)
                      -++...+-..|+|.|++..|+.++|.++|.+++.+..+.+-.  ..++|  .|+|.|....++..|+..||+..|.+  +
T Consensus        21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--~~~gf--qAFVef~~~~~A~~Ai~~LnG~~i~g~~~   96 (130)
T 3zzy_A           21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--KNNQF--QALLQYADPVSAQHAKLSLDGQNIYNACC   96 (130)
T ss_dssp             ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--ETTEE--EEEEEESCHHHHHHHHHHHTTCEEETTEE
T ss_pred             ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--CCCCc--EEEEEECCHHHHHHHHHHcCCCeecCCCc
Confidence            334445667888999999999999999999999999998853  12223  29999999999999999999998877  5


Q ss_pred             ccc
Q psy4687         105 ELG  107 (339)
Q Consensus       105 el~  107 (339)
                      .|.
T Consensus        97 ~Lr   99 (130)
T 3zzy_A           97 TLR   99 (130)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=97.38  E-value=0.00055  Score=60.98  Aligned_cols=69  Identities=14%  Similarity=0.231  Sum_probs=57.1

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCe--eEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGF--LRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF--~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      .+.+|||++||++++.++|.+++..++..  ..+.+-.-...+  ...|+|.|....++..|+..||+..|.+
T Consensus       122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~--~g~gfV~f~~~~~A~~Ai~~lng~~~~g  192 (205)
T 3tyt_A          122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSER--SSSGLLEWDSKSDALETLGFLNHYQMKN  192 (205)
T ss_dssp             CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSS--SEEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred             CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCC--ceEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence            35679999999999999999999999998  777764322222  2689999999999999999999987765

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=97.37  E-value=0.00029  Score=57.49  Aligned_cols=71  Identities=18%  Similarity=0.207  Sum_probs=58.9

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcC-CeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYS-GFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~-GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ....|||.+||++++.++|.+++++++ -...+.+-.- ..|.   .|+|.|....++..|+..||+..+.+-.+.
T Consensus        27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-~~rG---faFV~F~~~e~A~~Ai~~lng~~l~Gr~i~   98 (111)
T 2jvr_A           27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-DFDG---TGALEFPSEEILVEALERLNNIEFRGSVIT   98 (111)
T ss_dssp             CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-SSSC---CEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-CCCC---EEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence            467999999999999999999999998 6777777311 2333   699999999999999999999888876654

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.35  E-value=0.00045  Score=57.38  Aligned_cols=70  Identities=13%  Similarity=0.200  Sum_probs=56.5

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc--ccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN--IRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~--~~i~d~el~  107 (339)
                      ..+..|||++||++++.++|.++|..++....+.|--   .|.   .|+|.|....++..|+..+++  ..+.+-.+.
T Consensus        29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~---~kG---~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~  100 (119)
T 2ad9_A           29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK---GKN---QAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY  100 (119)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG---GGT---EEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCC---EEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence            3467899999999999999999999999998888752   243   699999999988888887763  456654443

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=97.33  E-value=0.00032  Score=58.33  Aligned_cols=75  Identities=15%  Similarity=0.208  Sum_probs=58.1

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEE------ecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVA------IADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~ls------LSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      .+++|||.+||++++.++|.+++.+++....+.      +-.+ ...+.-..|+|.|....++..|+..||+..+.+-.+
T Consensus        44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l  122 (143)
T 3egn_A           44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM  122 (143)
T ss_dssp             CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence            357899999999999999999999998765421      1001 122445689999999999999999999998887665


Q ss_pred             cc
Q psy4687         107 GA  108 (339)
Q Consensus       107 ~~  108 (339)
                      ..
T Consensus       123 ~V  124 (143)
T 3egn_A          123 VV  124 (143)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=97.32  E-value=0.00056  Score=58.98  Aligned_cols=69  Identities=20%  Similarity=0.232  Sum_probs=58.8

Q ss_pred             CCeEEeeecCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP-~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .++|||++||+ +++.++|.+++++++....+.+--.  .+.   .|+|.|....++..|+..||+..+.+..+.
T Consensus         3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~--~~g---~afV~f~~~~~a~~A~~~l~~~~~~g~~l~   72 (198)
T 1qm9_A            3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN--KKE---NALVQMADGNQAQLAMSHLNGHKLHGKPIR   72 (198)
T ss_dssp             CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT--CSS---CCEEECTTTHHHHHHHHHHTTCCCSSCCCE
T ss_pred             CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC--CCC---EEEEEECCHHHHHHHHHHhCCCeecCeEEE
Confidence            57899999999 9999999999999999988887521  134   499999999999999988999888776554

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.31  E-value=0.00044  Score=57.14  Aligned_cols=64  Identities=14%  Similarity=0.255  Sum_probs=55.6

Q ss_pred             CCCCeEEeee--cCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccc
Q psy4687          32 HRTSSIFLRN--LAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRL  101 (339)
Q Consensus        32 h~t~slfIk~--IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i  101 (339)
                      +.|..|||+|  ||.+++.++|++++.+++-...+.+-   +.|.   -|+|+|....++.+|+..||+..+
T Consensus        23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~---~~rg---faFV~f~~~~~A~~Ai~~lnG~~~   88 (114)
T 2cq2_A           23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP---PNKP---YSFARYRTTEESKRAYVTLNGKEV   88 (114)
T ss_dssp             SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC---TTCS---CEEEEESSHHHHHHHHHHTTTCEE
T ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe---CCCC---EEEEEECCHHHHHHHHHHhCCCEE
Confidence            3478899977  99999999999999999998888874   2455   599999999999999999999776

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=97.31  E-value=0.00038  Score=55.46  Aligned_cols=69  Identities=16%  Similarity=0.219  Sum_probs=60.1

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+++|+|+||++.++.++|.++|.+++-...+-|--   .|.   .|+|.|....++..|+..||+.++.+-.+.
T Consensus         6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kG---faFVey~~~~eA~~Ai~~Ln~~~l~gr~I~   74 (89)
T 2wbr_A            6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQG---IALCKYTTREEANKAQMALNNCVLANTTIF   74 (89)
T ss_dssp             CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTT---EEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCc---EEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence            478999999999999999999999999988888843   344   699999999999999999999888885554

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.30  E-value=0.00047  Score=55.99  Aligned_cols=71  Identities=14%  Similarity=0.083  Sum_probs=55.7

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCC---eeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSG---FLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~G---F~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      ....+|||++||.+++.++|.++++.++-   ...+.|- |+.  .+.--.|+|.|....++..|+. +|+..+.+-.
T Consensus        15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~--g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~   89 (118)
T 2db1_A           15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE--GRQSGEAFVELESEDDVKLALK-KDRESMGHRY   89 (118)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS--SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC--CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence            45678999999999999999999999865   5555553 443  3445589999999999998887 8877766633

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=97.27  E-value=0.00061  Score=56.79  Aligned_cols=71  Identities=15%  Similarity=0.243  Sum_probs=57.6

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCC-CCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPD-RRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~-krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      ..+|||++||++++.++|.+++++++-...+.+- |+... .+.-..|+|.|....++..|+..|++..+.+.
T Consensus         3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~   75 (175)
T 3nmr_A            3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG   75 (175)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred             ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC
Confidence            4689999999999999999999999888777663 33322 14557899999999999999989998776543

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=97.27  E-value=0.00034  Score=58.93  Aligned_cols=72  Identities=11%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ...+.+|||++||++++.++|.+++++++....+  ......+   ..|+|.|....++..|+..||+..+.+..+.
T Consensus        96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~---g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~  167 (175)
T 1fje_B           96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSK---GIAYIEFKSEADAEKNLEEKQGAEIDGRSVS  167 (175)
T ss_dssp             TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCC---SEEEEECSSHHHHHHHHHHHTEEEETTEEEE
T ss_pred             cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCc---eEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            3467899999999999999999999998666555  2222333   3699999999999999999999888875543

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=97.25  E-value=0.00095  Score=59.60  Aligned_cols=72  Identities=19%  Similarity=0.194  Sum_probs=60.5

Q ss_pred             cCCCCeEEeeecCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          31 LHRTSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        31 lh~t~slfIk~IpP-~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ...+++|||++||+ +++.++|.+++++++....+.+.-  ..+.   .|+|.|....++..|+..||+..+.+-.+.
T Consensus        31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~--~~~g---~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~  103 (229)
T 2adc_A           31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF--NKKE---NALVQMADGNQAQLAMSHLNGHKLHGKPIR  103 (229)
T ss_dssp             CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECC--TTSC---CEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred             CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEE--CCCC---EEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence            35568999999999 999999999999999998888852  1144   499999999999999988999888776554

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=96.33  E-value=4.5e-05  Score=61.29  Aligned_cols=75  Identities=13%  Similarity=0.166  Sum_probs=58.2

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeE--------EEec-CCCCCCCceEEEEEEecCcccHHHHHHhhcccccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLR--------VAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR  102 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~--------lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~  102 (339)
                      ..+.+|||.+||++++.++|.+++++++....        +.+. |+.. .+.-..|+|.|....++..|+..||+..+.
T Consensus         5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~   83 (116)
T 2lcw_A            5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET-GKLKGEATVSFDDPPSAKAAIDWFDGKEFS   83 (116)
Confidence            34678999999999999999999999987765        4442 2221 233347999999999999999889998887


Q ss_pred             Ccccc
Q psy4687         103 DCELG  107 (339)
Q Consensus       103 d~el~  107 (339)
                      +-.+.
T Consensus        84 g~~l~   88 (116)
T 2lcw_A           84 GNPIK   88 (116)
Confidence            75554

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.21  E-value=0.00065  Score=55.09  Aligned_cols=69  Identities=14%  Similarity=0.094  Sum_probs=55.3

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .+..|||++||.+++.++|.++++.+ +...+.|- |+.  .+.--.|+|.|....++.+|+ .+|+..+.+-.
T Consensus        15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~--g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~   84 (109)
T 2dnn_A           15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV--GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRY   84 (109)
T ss_dssp             HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT--CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC--CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence            34799999999999999999999999 87777774 443  234458999999999998887 67776666533

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.18  E-value=0.00075  Score=54.86  Aligned_cols=73  Identities=16%  Similarity=0.202  Sum_probs=55.2

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeE-EEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLR-VAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~-lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      .....|||.+||++++.++|.+++..++.... +.+-+.. ..+.-..|+|.|....++..|+. +|+..+.+-.+
T Consensus        23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i   96 (124)
T 1wel_A           23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP-NGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFI   96 (124)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECT-TSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCB
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECC-CCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEE
Confidence            34579999999999999999999999876532 2222222 23445689999999999998887 88877766443

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.17  E-value=0.0015  Score=52.37  Aligned_cols=72  Identities=10%  Similarity=0.240  Sum_probs=57.6

Q ss_pred             CCCCeEEeeecCCCCC-----------HHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccc
Q psy4687          32 HRTSSIFLRNLAPTIT-----------KAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIR  100 (339)
Q Consensus        32 h~t~slfIk~IpP~is-----------r~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~  100 (339)
                      ..+..|+|+|+.....           .++|.++|.+++-...+.+-|+. .|.   .|+|.|....++..|+..||+..
T Consensus        13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~-~~G---~afV~f~~~~~A~~Ai~~lng~~   88 (112)
T 2dit_A           13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRH-PDG---VASVSFRDPEEADYCIQTLDGRW   88 (112)
T ss_dssp             CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTC-TTC---EEEEECSCHHHHHHHHHHSTTCE
T ss_pred             CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCC-CCE---EEEEEECCHHHHHHHHHHcCCCE
Confidence            4578999999944332           57999999999999999887665 345   49999999999999999999988


Q ss_pred             ccCcccc
Q psy4687         101 LRDCELG  107 (339)
Q Consensus       101 i~d~el~  107 (339)
                      +.+-.+.
T Consensus        89 ~~gr~l~   95 (112)
T 2dit_A           89 FGGRQIT   95 (112)
T ss_dssp             ETTEECE
T ss_pred             ECCcEEE
Confidence            7765543

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=97.17  E-value=0.00093  Score=55.49  Aligned_cols=73  Identities=16%  Similarity=0.363  Sum_probs=56.6

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      .+.+|||++||++++.++|.+++++++....+.+.--....+.--.|+|.|....++..|+. +++..+.+-.+
T Consensus        86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i  158 (167)
T 2cjk_A           86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKI  158 (167)
T ss_dssp             HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCE
T ss_pred             CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEE
Confidence            35689999999999999999999999998888875221222333479999999988888775 77777766444

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=97.12  E-value=0.00073  Score=67.29  Aligned_cols=75  Identities=7%  Similarity=0.158  Sum_probs=61.8

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAI  109 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~~  109 (339)
                      +++|||.+||++|+-++|.++|.+++.+..+.|- |+.. .+.--.|+|+|....++..|+..||+..|.+-.|.+.
T Consensus       102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~t-g~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~  177 (437)
T 3pgw_S          102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRS-GKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD  177 (437)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCC-CCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence            4799999999999999999999999999888774 3322 2333479999999999999999999999888766543

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=97.12  E-value=0.0012  Score=58.84  Aligned_cols=70  Identities=13%  Similarity=0.146  Sum_probs=59.6

Q ss_pred             CCCeEEeeecC-CCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLA-PTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~Ip-P~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+++|||++|| ..++.++|.+++.+++....+-+-  ...|.   .|+|.|....++..|+..||+..+.+-.+.
T Consensus         3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~--~~~~g---~afV~f~~~~~A~~Ai~~lng~~~~g~~l~   73 (205)
T 3tyt_A            3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFM--KSKPG---AAMVEMADGYAVDRAITHLNNNFMFGQKMN   73 (205)
T ss_dssp             CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEEC--TTSTT---CEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEe--cCCCC---EEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence            36789999999 699999999999999999999874  22334   599999999999999999999988876554

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=97.10  E-value=0.00092  Score=60.91  Aligned_cols=69  Identities=20%  Similarity=0.389  Sum_probs=58.8

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc-Cccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR-DCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~-d~el  106 (339)
                      .+++|||++||++++.++|.++|.+++....+.+-   +.+  .-.|+|.|....++..|+..||+..+. +..+
T Consensus       206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~---~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l  275 (282)
T 3pgw_A          206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV---PGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAM  275 (282)
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe---cCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEE
Confidence            45789999999999999999999999999998886   222  248999999999999999999998887 5333

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=97.10  E-value=0.0011  Score=60.39  Aligned_cols=72  Identities=22%  Similarity=0.307  Sum_probs=61.2

Q ss_pred             ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .....++|||.+||++++.++|.++++.++....+.+.   ..|   ..|+|.|....++..|+..+|+..+.+..+.
T Consensus        18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---~~k---g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~   89 (261)
T 3sde_A           18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---RDR---GFGFIRLESRTLAEIAKAELDGTILKSRPLR   89 (261)
T ss_dssp             SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---TTT---TEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---CCC---cEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence            34566899999999999999999999999998888884   223   4799999999999999988999888876654

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=97.09  E-value=0.0019  Score=53.92  Aligned_cols=69  Identities=16%  Similarity=0.213  Sum_probs=54.1

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCee--EEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFL--RVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~--~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      ...+..|||++||++++.++|.++++.+ |..  .+.|- |+.  .+.--.|+|.|....++..|+.. ++..+.+
T Consensus        39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~--GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g  110 (126)
T 2hgm_A           39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE--GKITGEAFVQFASQELAEKALGK-HKERIGH  110 (126)
T ss_dssp             SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS--SSSCSEEEEEESSTTHHHHHHTT-TTCCBTT
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC--CCCceEEEEEECCHHHHHHHHHH-CCCEECC
Confidence            3567889999999999999999999999 877  66664 444  23345799999999998888763 5555554

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=97.08  E-value=0.0013  Score=60.24  Aligned_cols=74  Identities=15%  Similarity=0.209  Sum_probs=57.9

Q ss_pred             ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .-..+++|||++||++++.++|.+++++++-...+.+. |+...   -..|+|.|....++..|+ .+++..+.+-.+.
T Consensus        37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~---~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~  111 (292)
T 2ghp_A           37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKN---FRFARIEFARYDGALAAI-TKTHKVVGQNEII  111 (292)
T ss_dssp             -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSS---SEEEEEEESSHHHHHHHH-TTTTCEETTEECE
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCC---cEEEEEEECCHHHHHHHH-HhCCcEeCCcEEE
Confidence            34557899999999999999999999999988888774 44333   379999999999988888 5888888776554

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=97.07  E-value=0.002  Score=58.77  Aligned_cols=75  Identities=15%  Similarity=0.212  Sum_probs=61.5

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .....|||++||++++.++|.++++.++....+.+. |+.. .+.-..|+|.|....++..|+..|++..+.+-.+.
T Consensus        93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~  168 (284)
T 3smz_A           93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERT-GQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY  168 (284)
T ss_dssp             CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT-CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCC-CccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence            456799999999999999999999999998888764 4433 23445799999999999999989999888776554

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=97.07  E-value=0.0015  Score=55.64  Aligned_cols=74  Identities=12%  Similarity=0.211  Sum_probs=57.5

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      .....+|||++||++++.++|.+++++++....+.+- |+... +.-..|+|.|....++..|+.. ++..+.+..+
T Consensus        10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l   84 (196)
T 1l3k_A           10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTK-RSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV   84 (196)
T ss_dssp             CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCC-CccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence            3567899999999999999999999999988777764 44332 3445899999999888887754 6666666544

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=97.06  E-value=0.0014  Score=55.92  Aligned_cols=79  Identities=13%  Similarity=0.190  Sum_probs=56.7

Q ss_pred             CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.....+.+|||++||++++.++|.++|++++....+.+--.....+.-..|+|.|....++..|+.. ++..+.+..+.
T Consensus        98 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~  176 (196)
T 1l3k_A           98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCE  176 (196)
T ss_dssp             -----CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECE
T ss_pred             cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEE
Confidence            33444568999999999999999999999999988887742222223445799999999888877754 56666664443

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.06  E-value=0.0014  Score=54.79  Aligned_cols=64  Identities=6%  Similarity=0.020  Sum_probs=54.0

Q ss_pred             CcccCCCCeEEeeecCCC-CCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecC-cccHHHHHHhhc
Q psy4687          28 PRALHRTSSIFLRNLAPT-ITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRR-DVDIKEICWNLN   97 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~-isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~-~~~~~~~~~~L~   97 (339)
                      ...+.+++.|+|.+++++ +||++|.+++++++...|+-+..=..      .|||.|.. ..++++++.++|
T Consensus        12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln   77 (121)
T 1owx_A           12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDAN   77 (121)
T ss_dssp             CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTT
T ss_pred             cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhh
Confidence            456788999999999999 99999999999999999888853222      39999999 677777877785

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=97.04  E-value=0.0026  Score=54.74  Aligned_cols=71  Identities=14%  Similarity=0.242  Sum_probs=58.7

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcC-CeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc-Ccccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYS-GFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR-DCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~-GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~-d~el~  107 (339)
                      ..+..|||++||++++.++|.+++.+++ ....+.+...  .+   ..|+|.|....++..|+..||+..+. +..+.
T Consensus       118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~---g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~  190 (198)
T 1qm9_A          118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DR---KMALIQMGSVEEAVQALIDLHNHDLGENHHLR  190 (198)
T ss_dssp             CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TS---SCEEEECSSHHHHHHHHHHHTSSCCSSCCSCC
T ss_pred             CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CC---cEEEEEeCCHHHHHHHHHHhcCCccCCCCeEE
Confidence            3478899999999999999999999998 6788887421  13   37999999999999999999998887 54443

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.03  E-value=0.002  Score=50.99  Aligned_cols=70  Identities=19%  Similarity=0.216  Sum_probs=53.8

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      .....|||++||++++.++|.++++.++ -..+.| -|+  ..+.--.|+|.|....++..|+ .+|+..+.+-.
T Consensus        13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~   83 (102)
T 1wez_A           13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP--DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRY   83 (102)
T ss_dssp             SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS--SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC--CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcE
Confidence            4457899999999999999999999987 446655 344  3344447999999999998888 46777666533

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=97.01  E-value=0.0013  Score=52.18  Aligned_cols=71  Identities=8%  Similarity=0.003  Sum_probs=55.0

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCC---eeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSG---FLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~G---F~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      -...+|||++||++++.++|.++++.++-   ...+.|. |+.  .+.-..|+|.|....++..|+. +++..+.+-.
T Consensus         9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~--g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~   83 (107)
T 2lmi_A            9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD--GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY   83 (107)
T ss_dssp             SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT--STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred             CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC--CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence            35678999999999999999999999644   6666664 343  3344579999999999988887 7777666533

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.00  E-value=0.0015  Score=52.44  Aligned_cols=71  Identities=17%  Similarity=0.170  Sum_probs=53.9

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCe-eEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGF-LRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF-~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ...+|||++||++++.++|.+++..++-. ..+.| -|+  ..+.-..|+|.|....++..|+.. |+..+.+-.+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~--~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i   86 (114)
T 2cpy_A           14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN--NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA   86 (114)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT--TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred             CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC--CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence            35789999999999999999999999655 33444 444  233445799999999988888765 7777766444

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=96.98  E-value=0.0012  Score=60.25  Aligned_cols=75  Identities=9%  Similarity=0.031  Sum_probs=61.9

Q ss_pred             CCCCeEEeeecCCCC-CHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTI-TKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~i-sr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+.+|||++||+++ +.++|.++|..++....+.|--. +..+--..|+|.|....++..|+..||+..+.|..+.
T Consensus       182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~  257 (284)
T 3smz_A          182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG-QDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLR  257 (284)
T ss_dssp             TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC-SSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Confidence            456889999999997 99999999999999888876421 2334557899999999999999999999988776554

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=96.97  E-value=0.001  Score=58.76  Aligned_cols=72  Identities=18%  Similarity=0.309  Sum_probs=59.6

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+..|||++||++++.++|.+++.+++....+.| -|+...   -..|+|.|....++..|+..||+..|.+-.+.
T Consensus       102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~---~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~  174 (213)
T 4f02_A          102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS---KGYGFVHFETQEAAERAIEKMNGMLLNDRKVF  174 (213)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEE---EEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCC---ceEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence            4568999999999999999999999999888776 333322   34799999999999999999999888875554

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=96.92  E-value=0.0016  Score=54.00  Aligned_cols=61  Identities=18%  Similarity=0.362  Sum_probs=49.6

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHh
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWN   95 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~   95 (339)
                      +++|||++||++++.++|.+++++++....+.+- |+... +--..|+|.|....++..|+.+
T Consensus         3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-~~~g~afV~f~~~~~a~~A~~~   64 (167)
T 2cjk_A            3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATG-RSRGFGFLSFEKPSSVDEVVKT   64 (167)
T ss_dssp             GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTS-SCCSCEEEEESSTHHHHHHHHS
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCC-CccceEEEEEccHHHHHHHHhc
Confidence            5789999999999999999999999998888874 33322 2334799999999988887764

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=96.91  E-value=0.0015  Score=59.78  Aligned_cols=74  Identities=14%  Similarity=0.253  Sum_probs=59.5

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcC-CeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYS-GFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~-GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ...+|||++||++++.++|.++++.++ ....+.+--... .+.-..|+|.|....++..|+..|++..+.+..+.
T Consensus       116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  190 (292)
T 2ghp_A          116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLV  190 (292)
T ss_dssp             CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence            578999999999999999999999999 888888742221 12335799999999999999998999888876654

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.85  E-value=0.0011  Score=53.06  Aligned_cols=64  Identities=13%  Similarity=0.250  Sum_probs=49.4

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCC--CCceEEEEEEecCcccHHHHHHhhc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPD--RRWFRRGWVTFRRDVDIKEICWNLN   97 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~--krf~R~GWV~f~~~~~~~~~~~~L~   97 (339)
                      .+.+|||.+||++++.++|.+++.+++... +.+ -++...  .+.-..|+|.|....++..|+..++
T Consensus         7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~   73 (114)
T 2dnl_A            7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL   73 (114)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence            357899999999999999999999998887 443 333221  1223469999999999888887774

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.85  E-value=0.0013  Score=49.90  Aligned_cols=53  Identities=25%  Similarity=0.405  Sum_probs=44.5

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHH
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIK   90 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~   90 (339)
                      .+++|||.+||++++.++|.+++++++....+.+--.  .|.   .|+|.|....+++
T Consensus         4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g---~afV~f~~~~~a~   56 (88)
T 1wf0_A            4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRA---FAFVTFADDQIAQ   56 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCS---CCEEECSCHHHHH
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCC---EEEEEECCHHHHH
Confidence            4689999999999999999999999999988888532  333   6999999887654

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=96.81  E-value=0.0031  Score=55.36  Aligned_cols=71  Identities=13%  Similarity=0.259  Sum_probs=59.2

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceE-EEEEEecCcccHHHHHHhhccccccC--cccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFR-RGWVTFRRDVDIKEICWNLNNIRLRD--CELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R-~GWV~f~~~~~~~~~~~~L~~~~i~d--~el~  107 (339)
                      .+...|||.+||..|+.++|.++|.+++....+.+-+-    + -| .|+|.|....++..|+..||+..|.+  +.|.
T Consensus        44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~  117 (164)
T 1sjr_A           44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----N-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR  117 (164)
T ss_dssp             CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----S-SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred             CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence            44567899999999999999999999999999998421    1 23 59999999999999999999998865  5554

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=96.78  E-value=0.0016  Score=54.97  Aligned_cols=71  Identities=14%  Similarity=0.066  Sum_probs=55.5

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCC---eeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSG---FLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~G---F~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      -...+|||++||.+++.++|.++++.++-   ...+.|. |+.  .+.--.|+|.|....++..|+. +|+..+.+-.
T Consensus        42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~--g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~  116 (136)
T 2hgl_A           42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE--GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY  116 (136)
T ss_dssp             CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS--SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC--CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence            35678999999999999999999999975   4555443 554  3344479999999999998887 8887776643

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=96.75  E-value=0.0042  Score=55.37  Aligned_cols=70  Identities=14%  Similarity=0.260  Sum_probs=57.7

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcC-CeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc-Ccccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYS-GFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR-DCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~-GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~-d~el~  107 (339)
                      .+.+|||++||++++.++|.++|.+++ ....+.+-. . .+.   .|+|.|....++..|+..||+..+. +..+.
T Consensus       150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~-~-~~g---~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~  221 (229)
T 2adc_A          150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ-K-DRK---MALIQMGSVEEAVQALIDLHNHDLGENHHLR  221 (229)
T ss_dssp             SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS-S-STT---CEEEEESSHHHHHHHHHHHTTCBSSSSCBCE
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE-C-CCc---EEEEEECCHHHHHHHHHHHCCCccCCCCeEE
Confidence            368899999999999999999999997 667777731 1 233   7999999999999999999998887 65443

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=96.75  E-value=0.0025  Score=53.13  Aligned_cols=68  Identities=18%  Similarity=0.314  Sum_probs=53.9

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcC---C--------eeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYS---G--------FLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRL  101 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~---G--------F~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i  101 (339)
                      ...+|||++||++++.++|.+++++++   |        ...+.+.   ..|   ..|+|.|....++..|+ .+|+..+
T Consensus         3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~---g~afV~f~~~~~A~~A~-~~~~~~~   75 (172)
T 2g4b_A            3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDK---NFAFLEFRSVDETTQAM-AFDGIIF   75 (172)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTT---TEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred             cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCC---CEEEEEeCCHHHHHHHH-HhCCcEe
Confidence            467999999999999999999999983   4        3444443   123   47999999999999888 8999888


Q ss_pred             cCcccc
Q psy4687         102 RDCELG  107 (339)
Q Consensus       102 ~d~el~  107 (339)
                      .+-.+.
T Consensus        76 ~g~~i~   81 (172)
T 2g4b_A           76 QGQSLK   81 (172)
T ss_dssp             TTEECE
T ss_pred             cCceee
Confidence            776554

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=96.73  E-value=0.0034  Score=57.07  Aligned_cols=72  Identities=14%  Similarity=0.314  Sum_probs=60.1

Q ss_pred             CCCeEEeeecCCCCCHHHHH----HHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVE----NLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele----~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+.+|||++||++++.++|.    +++++++....+.+-.   ..+.-..|+|.|....++..|+..||+..+.+..+.
T Consensus         8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   83 (282)
T 3pgw_A            8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR   83 (282)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence            47899999999999999977    8999999888888763   223345899999999999999999999888876554

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=96.64  E-value=0.0034  Score=48.41  Aligned_cols=59  Identities=24%  Similarity=0.357  Sum_probs=44.5

Q ss_pred             CCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHH
Q psy4687          27 PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIK   90 (339)
Q Consensus        27 ~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~   90 (339)
                      .+.+.+.+++|||.+||++++.++|.+++++++....+.|--  ..|.   .|+|+|....++.
T Consensus         4 ~~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~--~srG---faFV~F~~~~~A~   62 (89)
T 3d2w_A            4 SHHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK--PFRA---FAFVTFADDKVAQ   62 (89)
T ss_dssp             -------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS--SCCS---EEEEEESCHHHHH
T ss_pred             cCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee--CCCC---EEEEEECCHHHHH
Confidence            345567889999999999999999999999999998888752  2333   7999999887655

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=96.63  E-value=0.0041  Score=54.91  Aligned_cols=71  Identities=10%  Similarity=0.219  Sum_probs=56.8

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ..+|||.+||++++.++|.+++++++....+.|--.. ..++--.|+|.|....++..|+..+ +..+.|-.+
T Consensus       109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l  179 (193)
T 2voo_A          109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDL  179 (193)
T ss_dssp             HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEEC
T ss_pred             cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEE
Confidence            3789999999999999999999999999988886433 2566679999999999888887544 445555443

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=96.54  E-value=0.0057  Score=52.09  Aligned_cols=67  Identities=18%  Similarity=0.319  Sum_probs=53.2

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcC---C--------eeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYS---G--------FLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR  102 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~---G--------F~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~  102 (339)
                      ..+|||++||++++.++|.+++++++   |        ...+.+.   ..|   ..|+|.|....++..|+ .||+..+.
T Consensus         4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~---g~afV~F~~~~~A~~Al-~l~g~~~~   76 (198)
T 2yh0_A            4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDK---NFAFLEFRSVDETTQAM-AFDGIIFQ   76 (198)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTT---TEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred             eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCC---CEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence            57899999999999999999999983   3        3444443   223   36999999999999998 89988887


Q ss_pred             Ccccc
Q psy4687         103 DCELG  107 (339)
Q Consensus       103 d~el~  107 (339)
                      +..+.
T Consensus        77 g~~i~   81 (198)
T 2yh0_A           77 GQSLK   81 (198)
T ss_dssp             TEEEE
T ss_pred             CceEE
Confidence            75543

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=96.48  E-value=0.0029  Score=53.55  Aligned_cols=71  Identities=15%  Similarity=0.202  Sum_probs=54.4

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      -...+|||++||.+++.++|.++++.++ ...+.|- |+.  .+.--.|+|.|....++..|+ .+|+..+.+-.+
T Consensus        44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~--g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i  115 (139)
T 2hgn_A           44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD--GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYI  115 (139)
T ss_dssp             -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS--SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC--CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEE
Confidence            3457899999999999999999999998 6677663 433  222236999999999988888 678777766443

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=96.39  E-value=0.0053  Score=55.86  Aligned_cols=70  Identities=11%  Similarity=0.193  Sum_probs=56.7

Q ss_pred             ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccc
Q psy4687          30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIR  100 (339)
Q Consensus        30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~  100 (339)
                      ....+.+|||++||++++.++|.+++..++....+.+.-. +..+--..|+|.|....++..|+..||+..
T Consensus        92 ~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~  161 (261)
T 3sde_A           92 FATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGA  161 (261)
T ss_dssp             ECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSC
T ss_pred             ecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCe
Confidence            3345789999999999999999999999999888877422 233445679999999999999998886533

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=96.18  E-value=0.0014  Score=55.13  Aligned_cols=74  Identities=19%  Similarity=0.287  Sum_probs=53.8

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ...++|||++||++++.++|.+++.+++....+.+-|+... +.-..|+|.|....++..|+ .||+..+.+-.+.
T Consensus        11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~-~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~   84 (175)
T 1fje_B           11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG-TNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIK   84 (175)
T ss_dssp             SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEE-TTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEE
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCC-ccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEE
Confidence            34689999999999999999999999853221222222211 12247999999999999888 5999888876554

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.10  E-value=0.0062  Score=50.38  Aligned_cols=69  Identities=17%  Similarity=0.118  Sum_probs=51.3

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCe----eEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGF----LRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF----~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      ..+..|||++||.+++.++|.++++.++..    ..+.|- |+  ..+.--.|+|.|....++..|+.. ++..+.+
T Consensus        21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~--~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g   94 (123)
T 2dha_A           21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP--DGRPTGDAFVLFACEEYAQNALRK-HKDLLGK   94 (123)
T ss_dssp             CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT--TSCEEEEEEECCSSHHHHHHHHTT-TTEESSS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC--CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC
Confidence            345799999999999999999999999742    333332 33  334556899999999988888764 6555444

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.033  Score=47.54  Aligned_cols=78  Identities=12%  Similarity=0.163  Sum_probs=59.9

Q ss_pred             CeEEeeec----CCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEec-----Cccc---HHHHHH--hhccc
Q psy4687          35 SSIFLRNL----APTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFR-----RDVD---IKEICW--NLNNI   99 (339)
Q Consensus        35 ~slfIk~I----pP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~-----~~~~---~~~~~~--~L~~~   99 (339)
                      ++|||.++    |++++-++|.+++++++-...+.+ .||... +.-=.|+|.|.     ++.+   +..|..  .+|+.
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg-~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~   81 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSA-LPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC   81 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTC-CEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-ceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence            68999999    999999999999999999887776 889876 34458999998     4554   344444  57888


Q ss_pred             cccCcccccccccc
Q psy4687         100 RLRDCELGAIVNRD  113 (339)
Q Consensus       100 ~i~d~el~~~v~r~  113 (339)
                      +|.+..+...+|+.
T Consensus        82 ~I~Gr~irV~ln~~   95 (136)
T 2j8a_A           82 FIMGFKFEVILNKH   95 (136)
T ss_dssp             EETTEEEEEEECCT
T ss_pred             eecCcEEEEEECcc
Confidence            88887766555443

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=95.48  E-value=0.018  Score=53.30  Aligned_cols=65  Identities=11%  Similarity=0.270  Sum_probs=56.4

Q ss_pred             cCCCCeEEeeecCCCC---------CHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccc
Q psy4687          31 LHRTSSIFLRNLAPTI---------TKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRL  101 (339)
Q Consensus        31 lh~t~slfIk~IpP~i---------sr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i  101 (339)
                      .....+|||.+||+.+         +.++|.+++.+++-...+.+-   +.|.   .|+|+|....++..|+.+|++..+
T Consensus       131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~---~~kG---~AFV~F~~~~~Ae~A~~am~g~~l  204 (240)
T 3u1l_A          131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV---ESKN---CGFVKFKYQANAEFAKEAMSNQTL  204 (240)
T ss_dssp             CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE---GGGT---EEEEEESSHHHHHHHHHHHTTCCC
T ss_pred             ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE---CCCC---EEEEEeCCHHHHHHHHHHhCCCEE
Confidence            3567899999999999         799999999999999888875   2455   599999999999999999998877

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=95.29  E-value=0.068  Score=42.64  Aligned_cols=74  Identities=19%  Similarity=0.217  Sum_probs=56.4

Q ss_pred             CCCeEEeeecCC-----CCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          33 RTSSIFLRNLAP-----TITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP-----~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      .+..|+|+|+..     +-..++|.+.|++++-...+.+. ||....+---.|+|.|....++..|+..||+..+.+-.+
T Consensus         7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i   86 (105)
T 2pe8_A            7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV   86 (105)
T ss_dssp             CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence            467899999962     22689999999999999999885 444322223479999999999999999999887766443

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=95.22  E-value=0.086  Score=41.85  Aligned_cols=69  Identities=19%  Similarity=0.305  Sum_probs=52.4

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe--cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAI--ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsL--SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      +-|.||++||+++.+++.+.+.-.+-+.|..-  ++......=+-+++|.|+...++.+....+++....|
T Consensus         2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D   72 (91)
T 1uw4_A            2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD   72 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred             cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence            34789999999999999999999988777665  3322223445678999999988888777787655443

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.61  E-value=0.13  Score=41.27  Aligned_cols=62  Identities=11%  Similarity=0.152  Sum_probs=49.4

Q ss_pred             CCCeEEeeecCCCCCHHH----HHHHHhhcCC-eeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          33 RTSSIFLRNLAPTITKAE----VENLCKRYSG-FLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~e----le~~ck~~~G-F~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      ..+.|+|+|||-.++..+    |.+++.+++| ...++       .   --|||.|....++..|+..||+..+-+=
T Consensus         8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-------g---G~AfV~F~~~esA~~A~~~l~G~~l~gr   74 (96)
T 2diu_A            8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-------G---CSAILRFINQDSAERAQKRMENEDVFGN   74 (96)
T ss_dssp             SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-------T---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred             cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-------c---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence            334489999999999766    6689999964 65552       1   5799999999999999999998777653

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=94.50  E-value=0.018  Score=33.69  Aligned_cols=26  Identities=23%  Similarity=0.547  Sum_probs=22.6

Q ss_pred             eecCCCCcccccChhhHHhhhhhcch
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .|.|+.|+|.|.....+..|+...|.
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHcc
Confidence            48899999999999999999766664

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.48  E-value=0.034  Score=40.43  Aligned_cols=44  Identities=18%  Similarity=0.416  Sum_probs=34.0

Q ss_pred             HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchHH
Q psy4687         289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEK  332 (339)
Q Consensus       289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~  332 (339)
                      .+...+..+..+..+..|.|+.|+|.|....-+.+|++..|+..
T Consensus        22 ~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   65 (78)
T 2d9h_A           22 SLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL   65 (78)
T ss_dssp             HHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            44555554443334678999999999999999999999999864

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=94.47  E-value=0.021  Score=32.57  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=20.9

Q ss_pred             ecCCCCcccccChhhHHhhhhhc
Q psy4687         306 WLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       306 ~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      |.|..|+|.|....-+..|++.-
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h   24 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVH   24 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHc
Confidence            78999999999999999998753

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=94.41  E-value=0.072  Score=51.69  Aligned_cols=65  Identities=14%  Similarity=0.241  Sum_probs=56.9

Q ss_pred             CCCCeEEeee--cCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc
Q psy4687          32 HRTSSIFLRN--LAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR  102 (339)
Q Consensus        32 h~t~slfIk~--IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~  102 (339)
                      ..|..|||.|  ++..++.++|.+++.+++-...+.+- |  .|.   -|+|+|....++++|+..||+..+-
T Consensus        16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~--~kg---faFV~f~~~~~A~~Ai~~lnG~~~~   82 (345)
T 3tht_A           16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-P--NKP---YSFARYRTTEESKRAYVTLNGKEVV   82 (345)
T ss_dssp             SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-T--TCS---EEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred             CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-C--CCC---EEEEEECCHHHHHHHHHHhCCCccc
Confidence            6688999999  57899999999999999999988884 3  454   7999999999999999999998773

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=94.41  E-value=0.015  Score=33.74  Aligned_cols=27  Identities=19%  Similarity=0.391  Sum_probs=23.7

Q ss_pred             eecCCCCcccccChhhHHhhhhhcchH
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .|.|+.|+|.|....-+..|+..-|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            378999999999999999999876654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=93.80  E-value=0.028  Score=34.08  Aligned_cols=29  Identities=31%  Similarity=0.505  Sum_probs=24.8

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      +-.|.|..|+|.|....-+..|+..-+.+
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            5 SSGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            45699999999999999999999875544

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=93.70  E-value=0.036  Score=34.24  Aligned_cols=27  Identities=19%  Similarity=0.399  Sum_probs=23.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|.....+..|+..-
T Consensus         8 ~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            8 GIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            355799999999999999999998763

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=93.64  E-value=0.027  Score=32.51  Aligned_cols=27  Identities=19%  Similarity=0.502  Sum_probs=23.0

Q ss_pred             CeecCCCCcccccChhhHHhhhhhcch
Q psy4687         304 DKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       304 ~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      ..|.|..|+|.|....-+..|+..-++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~   28 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDT   28 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            358999999999999999999876443

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=93.60  E-value=0.025  Score=32.73  Aligned_cols=25  Identities=32%  Similarity=0.619  Sum_probs=22.0

Q ss_pred             eecCCCCcccccChhhHHhhhhhcc
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .|.|+.|+|.|.....+..|+..-+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CccCCCCCchhCCHHHHHHHHHHhc
Confidence            4889999999999999999997633

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=93.54  E-value=0.014  Score=40.19  Aligned_cols=31  Identities=19%  Similarity=0.459  Sum_probs=27.2

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchHH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAEK  332 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~  332 (339)
                      .+..|.|+.|+|.|....-+..|+...|+..
T Consensus        27 ~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A           27 NEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             SSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            3456999999999999999999999889754

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=93.51  E-value=0.027  Score=32.51  Aligned_cols=25  Identities=12%  Similarity=0.522  Sum_probs=22.0

Q ss_pred             eecCCCCcccccChhhHHhhhhhcc
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .|.|+.|+|.|....-+..|+..-+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhc
Confidence            4889999999999999999987643

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=93.36  E-value=0.043  Score=31.47  Aligned_cols=24  Identities=17%  Similarity=0.362  Sum_probs=21.3

Q ss_pred             CeecCCCCcccccChhhHHhhhhh
Q psy4687         304 DKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       304 ~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      -.|.|+.|+|.|....-+..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRT   25 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHHH
Confidence            358999999999999999999864

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=93.11  E-value=0.025  Score=32.39  Aligned_cols=26  Identities=27%  Similarity=0.420  Sum_probs=22.2

Q ss_pred             eecCCCCcccccChhhHHhhhhhcch
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .|.|+.|+|.|....-+..|+..-++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~   27 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIA   27 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHS
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhcc
Confidence            47899999999999999999876443

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=93.03  E-value=0.036  Score=37.58  Aligned_cols=30  Identities=20%  Similarity=0.334  Sum_probs=26.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .+..|.|+.|+|.|....-+..|++..|.+
T Consensus        26 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A           26 DVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             SCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            355699999999999999999999988765

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=93.02  E-value=0.035  Score=36.56  Aligned_cols=26  Identities=27%  Similarity=0.438  Sum_probs=25.2

Q ss_pred             ecCCCCcccccChhhHHhhhhhcchH
Q psy4687         306 WLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       306 ~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      |.||+|-|-|.+++-+..|-..+|++
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            99999999999999999999999985

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=92.14  E-value=0.018  Score=33.59  Aligned_cols=26  Identities=19%  Similarity=0.390  Sum_probs=22.3

Q ss_pred             eecCCCCcccccChhhHHhhhhhcch
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .|.|+.|+|.|.....+..|+..-++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTG   27 (29)
Confidence            47899999999999999999875443

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.98  E-value=0.03  Score=34.63  Aligned_cols=29  Identities=31%  Similarity=0.646  Sum_probs=24.8

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      +-.|.|+.|+|.|....-+..|+..-+.+
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   35 (37)
T 2elo_A            7 GRSYSCPVCEKSFSEDRLIKSHIKTNHPE   35 (37)
T ss_dssp             CCCCEETTTTEECSSHHHHHHHHHHHCSS
T ss_pred             CCCcCCCCCCCccCCHHHHHHHHHHHcCC
Confidence            45699999999999999999999875543

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.94  E-value=0.04  Score=31.86  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             eecCCCCcccccChhhHHhhhhh
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .|.|+.|+|.|.....+..|+..
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHTT
T ss_pred             CcCCCCCCcccCCHHHHHHHHHh
Confidence            58999999999999999999864

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.94  E-value=0.027  Score=35.30  Aligned_cols=28  Identities=14%  Similarity=0.387  Sum_probs=23.8

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      +-.|.|..|+|.|....-+..|+...|.
T Consensus         7 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            7 GHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            4569999999999999999999555564

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=92.86  E-value=0.29  Score=38.83  Aligned_cols=74  Identities=16%  Similarity=0.251  Sum_probs=55.4

Q ss_pred             CCCeEEeeec--CCCC--------CHHHHHHHHhhcCCeeEEEecCCCCC--CCceEEEEEEecCcccHHHHHHhhcccc
Q psy4687          33 RTSSIFLRNL--APTI--------TKAEVENLCKRYSGFLRVAIADPQPD--RRWFRRGWVTFRRDVDIKEICWNLNNIR  100 (339)
Q Consensus        33 ~t~slfIk~I--pP~i--------sr~ele~~ck~~~GF~~lsLSDP~p~--krf~R~GWV~f~~~~~~~~~~~~L~~~~  100 (339)
                      .|..|.|+|+  |-.+        ..++|.+.|.+++-...+.+-.+...  .+-.-.|+|.|....++..|+..||+..
T Consensus         4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~   83 (105)
T 3v4m_A            4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK   83 (105)
T ss_dssp             CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred             CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence            4678899997  3333        34789999999999999999655422  1122378999999999999999999877


Q ss_pred             ccCccc
Q psy4687         101 LRDCEL  106 (339)
Q Consensus       101 i~d~el  106 (339)
                      +.+-.+
T Consensus        84 f~GR~i   89 (105)
T 3v4m_A           84 FANRVV   89 (105)
T ss_dssp             ETTEEC
T ss_pred             eCCCEE
Confidence            766333

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=92.83  E-value=0.046  Score=38.31  Aligned_cols=29  Identities=24%  Similarity=0.431  Sum_probs=25.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|....-+..|++..|.
T Consensus        37 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           37 NVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             SCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            45679999999999999999999998874

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=92.74  E-value=0.05  Score=42.02  Aligned_cols=41  Identities=15%  Similarity=0.251  Sum_probs=33.0

Q ss_pred             HHHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         288 AEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       288 eevek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      ..+...++.++   .+-.|.|+.|+|.|.....+.+|++..|+.
T Consensus        42 ~~L~~H~~~H~---~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~   82 (85)
T 2lv2_A           42 GAQERHLRLLH---AAQVFPCKYCPATFYSSPGLTRHINKCHPS   82 (85)
T ss_dssp             HHHHHHHHTTS---CSSSEECTTSSCEESSHHHHHHHHHTTCTT
T ss_pred             HHHhhhhhhcc---CCCccCCCCCCCEeCCHHHHHHhCcccCcC
Confidence            34566666544   345799999999999999999999999985

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=91.90  E-value=0.02  Score=33.30  Aligned_cols=27  Identities=19%  Similarity=0.522  Sum_probs=23.1

Q ss_pred             eecCCCCcccccChhhHHhhhhhcchH
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .|.|..|+|.|....-+..|+..-+++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            489999999999999999998865443

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=92.69  E-value=0.06  Score=36.07  Aligned_cols=29  Identities=21%  Similarity=0.466  Sum_probs=24.9

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      +-.|.|..|+|.|....-+.+|++..|..
T Consensus         5 ~kp~~C~~C~k~F~~~~~L~~H~~~~H~~   33 (48)
T 3iuf_A            5 DKPYACDICGKRYKNRPGLSYHYAHSHLA   33 (48)
T ss_dssp             TSCEECTTTCCEESSHHHHHHHHHHSSCC
T ss_pred             CcCEECCCcCcccCCHHHHHHHhhhhcCC
Confidence            45699999999999999999999855643

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=92.65  E-value=0.037  Score=31.75  Aligned_cols=24  Identities=21%  Similarity=0.429  Sum_probs=21.5

Q ss_pred             eecCCCCcccccChhhHHhhhhhc
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .|.|+.|+|.|....-+..|+..-
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H   25 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIH   25 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHHh
Confidence            589999999999999999998763

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.61  E-value=0.045  Score=33.66  Aligned_cols=28  Identities=21%  Similarity=0.285  Sum_probs=23.8

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+-.|.|+.|+|.|....-+..|++.-+
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            6 SGKIFTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence            3557999999999999999999987533

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=92.59  E-value=0.056  Score=32.88  Aligned_cols=27  Identities=11%  Similarity=0.249  Sum_probs=23.5

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      +..|.|..|+|.|....-+..|+..-+
T Consensus         5 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            5 KRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            456999999999999999999987643

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.53  E-value=0.052  Score=33.15  Aligned_cols=28  Identities=32%  Similarity=0.576  Sum_probs=23.8

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|..|+|.|....-+..|+..-+
T Consensus         6 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            6 SGKTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence            3456999999999999999999987643

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.36  E-value=0.064  Score=32.90  Aligned_cols=25  Identities=20%  Similarity=0.284  Sum_probs=22.6

Q ss_pred             CCeecCCCCcccccChhhHHhhhhh
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      +-.|.|..|+|.|.....+..|+..
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            7 GLLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH
Confidence            4569999999999999999999876

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=92.32  E-value=0.07  Score=30.60  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=21.0

Q ss_pred             eecCCCCcccccChhhHHhhhhh
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .|.|+.|+|.|....-+..|++.
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHTT
T ss_pred             CccCCCCCcccCCHHHHHHHHHh
Confidence            58999999999999999999875

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.23  E-value=0.063  Score=34.05  Aligned_cols=28  Identities=18%  Similarity=0.260  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|.....+..|+..-+
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   34 (41)
T 2ept_A            7 GQRVYECQECGKSFRQKGSLTLHERIHT   34 (41)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHGGGCC
T ss_pred             CCCCeECCCCCCCcCCHHHHHHHHHHhC
Confidence            3557999999999999999999987643

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.11  E-value=0.054  Score=33.07  Aligned_cols=26  Identities=12%  Similarity=0.169  Sum_probs=22.9

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhc
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      +..|.|+.|+|.|....-+..|++.-
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~H   32 (36)
T 2elt_A            7 GKPYKCPQCSYASAIKANLNVHLRKH   32 (36)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHc
Confidence            45699999999999999999998753

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.05  E-value=0.066  Score=38.84  Aligned_cols=28  Identities=18%  Similarity=0.332  Sum_probs=25.9

Q ss_pred             CeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         304 DKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       304 ~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      ..|.|+.|+|.|....-+..|++..|+.
T Consensus        44 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A           44 AKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             SSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            5799999999999999999999999974

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.03  E-value=0.046  Score=38.96  Aligned_cols=41  Identities=15%  Similarity=0.232  Sum_probs=30.8

Q ss_pred             HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchHH
Q psy4687         289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEK  332 (339)
Q Consensus       289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~  332 (339)
                      .+...+..+.   .+..|.|+.|+|.|....-+..|++..|+++
T Consensus        24 ~L~~H~~~H~---~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~   64 (70)
T 1x5w_A           24 ALRIHERIHC---TDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM   64 (70)
T ss_dssp             HHHHHHGGGC---CSCSEECSSSSCEESSHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHcC---CCCCEeCCCCCCccCCHHHHHHHHHHHhCCC
Confidence            3444444332   3456999999999999999999999888764

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.99  E-value=0.072  Score=32.66  Aligned_cols=28  Identities=14%  Similarity=0.288  Sum_probs=23.7

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+-.|.|+.|+|.|....-+..|+..-+
T Consensus         6 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            6 SGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             CCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            3456999999999999999999987643

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=91.96  E-value=0.062  Score=32.83  Aligned_cols=24  Identities=38%  Similarity=0.654  Sum_probs=21.4

Q ss_pred             eecCCCCcccccChhhHHhhhhhc
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .|.|+.|+|.|....-+..|+..-
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H   25 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLH   25 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHHHh
Confidence            478999999999999999998753

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=91.89  E-value=0.14  Score=38.19  Aligned_cols=29  Identities=31%  Similarity=0.644  Sum_probs=26.2

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      +..|.|+.|+|.|....-+..|++..|+.
T Consensus        63 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             CSSBCCSSSCCCBSSHHHHHHHHHHTSCC
T ss_pred             CCceECCCccchhCCHHHHHHHHHHhcCC
Confidence            36799999999999999999999999864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.88  E-value=0.072  Score=34.65  Aligned_cols=29  Identities=17%  Similarity=0.267  Sum_probs=24.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|....-+..|+..-+.
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~   37 (46)
T 2emi_A            9 GERHYECSECGKAFIQKSTLSMHQRIHRG   37 (46)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHGGGCS
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHhHhCC
Confidence            35569999999999999999999876443

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=91.55  E-value=0.13  Score=41.50  Aligned_cols=71  Identities=20%  Similarity=0.301  Sum_probs=51.7

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe--cCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI--ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR  102 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL--SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~  102 (339)
                      |-+.-|.||.+||++|.+++.+.+.-.+...|.+.  ++......=+-+++|.|....++.+-....++.-..
T Consensus         7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~   79 (97)
T 2l08_A            7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL   79 (97)
T ss_dssp             CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred             ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence            45567899999999999999999888877655544  232223344567999999988888777777664443

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=91.33  E-value=0.097  Score=35.35  Aligned_cols=29  Identities=14%  Similarity=0.251  Sum_probs=24.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|....-+..|+...|.
T Consensus        29 ~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C           29 GEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            34569999999999999999999988773

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.33  E-value=0.089  Score=33.31  Aligned_cols=28  Identities=21%  Similarity=0.325  Sum_probs=23.8

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   35 (42)
T 2ytb_A            8 GEKPYRCDQCGKAFSQKGSLIVHIRVHT   35 (42)
T ss_dssp             SCCSBCCTTTTCCBSSHHHHHTTGGGTS
T ss_pred             CCCCeeCCCccchhCCHHHHHHHHHHhC
Confidence            3556999999999999999999987533

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.32  E-value=0.083  Score=33.81  Aligned_cols=27  Identities=19%  Similarity=0.490  Sum_probs=23.4

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2en7_A            9 GMKPYVCNECGKAFRSKSYLIIHTRTH   35 (44)
T ss_dssp             SSSSSCCTTTCCCCSSHHHHHHHHTTT
T ss_pred             CCcCeECCCCCCccCCHHHHHHHhhhc
Confidence            345699999999999999999999653

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=91.31  E-value=0.088  Score=33.42  Aligned_cols=29  Identities=21%  Similarity=0.373  Sum_probs=24.4

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|....-+..|+..-+.
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   35 (42)
T 2el5_A            7 GENPYECSECGKAFNRKDQLISHQRTHAG   35 (42)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHGGGCC
T ss_pred             CCCCccCCCcChhhCCHHHHHHHHHhcCC
Confidence            35569999999999999999999876443

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.25  E-value=0.094  Score=33.98  Aligned_cols=29  Identities=17%  Similarity=0.244  Sum_probs=24.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|..|+|.|....-+..|+..-+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ep1_A            9 GEKPYECSDCGKSFIKKSQLHVHQRIHTG   37 (46)
T ss_dssp             SCCSSCCSSSCCCCSSHHHHHHHHGGGSS
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHHhCC
Confidence            35569999999999999999999986443

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=91.23  E-value=0.084  Score=33.13  Aligned_cols=28  Identities=11%  Similarity=0.394  Sum_probs=23.7

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      +..|.|..|+|.|....-+..|+..-+.
T Consensus         4 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~   31 (39)
T 1njq_A            4 PRSYTCSFCKREFRSAQALGGHMNVHRR   31 (39)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CCceECCCCCcccCCHHHHHHHHHHcCC
Confidence            4569999999999999999999876443

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.22  E-value=0.091  Score=34.15  Aligned_cols=28  Identities=18%  Similarity=0.290  Sum_probs=23.8

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|..|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2emg_A            9 GENPFICSECGKVFTHKTNLIIHQKIHT   36 (46)
T ss_dssp             SCCSCBCTTTCCBCSSHHHHHHHHTTTS
T ss_pred             CCCCEECCccCcccCCHHHHHHHHHHhC
Confidence            3456999999999999999999987533

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.21  E-value=0.085  Score=34.19  Aligned_cols=29  Identities=14%  Similarity=0.190  Sum_probs=24.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|....-+..|+..-+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2ytf_A            9 GEKPFECSECQKAFNTKSNLIVHQRTHTG   37 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHTSCS
T ss_pred             CCCCcCCCCCCcccCCHHHHHHHHHHhCC
Confidence            35579999999999999999999876443

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=90.53  E-value=0.039  Score=31.35  Aligned_cols=23  Identities=26%  Similarity=0.585  Sum_probs=20.5

Q ss_pred             eecCCCCcccccChhhHHhhhhh
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .|.|+.|+|.|....-+..|++.
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            47899999999999999999864

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.16  E-value=0.069  Score=34.65  Aligned_cols=28  Identities=18%  Similarity=0.319  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|++.-+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (45)
T 2epu_A            9 GQKPFECTHCGKSFRAKGNLVTHQRIHT   36 (45)
T ss_dssp             SCCSEEETTTTEEESSHHHHHHHHTTTS
T ss_pred             CCcCccCCCCCCccCChHHHHHHHHHhC
Confidence            3557999999999999999999987633

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.10  E-value=0.089  Score=34.10  Aligned_cols=28  Identities=18%  Similarity=0.273  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yrj_A            9 GEKPYRCGECGKAFAQKANLTQHQRIHT   36 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcC
Confidence            3556999999999999999999987533

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.09  E-value=0.091  Score=34.14  Aligned_cols=28  Identities=18%  Similarity=0.363  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eq1_A            9 GEKPYKCNECGKAFRAHSNLTTHQVIHT   36 (46)
T ss_dssp             CSCCCCCTTTTCCCSSHHHHHHHHTTTC
T ss_pred             CCCCeECCcCChhhCCHHHHHHHHHHhC
Confidence            3567999999999999999999987533

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.09  E-value=0.13  Score=33.36  Aligned_cols=29  Identities=21%  Similarity=0.285  Sum_probs=24.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|....-+..|++..|.
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~~H~   37 (47)
T 2epx_A            9 GKKPYECIECGKAFIQNTSLIRHWRYYHT   37 (47)
T ss_dssp             CCCSBCCSSSCCCBSSHHHHHHHHTTTTT
T ss_pred             CCCCEECCccCchhCChHHHHHHhHhhcC
Confidence            34569999999999999999999984554

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.07  E-value=0.094  Score=33.37  Aligned_cols=29  Identities=14%  Similarity=0.451  Sum_probs=24.4

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|....-+..|+..-+.
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   36 (42)
T 2eos_A            8 GEKPYPCEICGTRFRHLQTLKSHLRIHTG   36 (42)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHTTTTSC
T ss_pred             CCCCEECCCCCCccCCHHHHHHHHHhcCC
Confidence            34569999999999999999999876443

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.04  E-value=0.089  Score=34.28  Aligned_cols=28  Identities=18%  Similarity=0.254  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+-.|.|..|+|.|.....+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2ytp_A            9 GERHYECSECGKAFARKSTLIMHQRIHT   36 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCeECCcCCcccCCHHHHHHHHHHhC
Confidence            3556999999999999999999987633

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.03  E-value=0.066  Score=34.92  Aligned_cols=29  Identities=17%  Similarity=0.382  Sum_probs=24.4

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|....-+..|+..-+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eoz_A            9 GEKPYSCNVCGKAFVLSAHLNQHLRVHTQ   37 (46)
T ss_dssp             SCCSEEETTTTEEESSHHHHHHHHHHHSS
T ss_pred             CCCCeECcccChhhCCHHHHHHHHHHhCC
Confidence            35579999999999999999999876443

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.02  E-value=0.1  Score=33.92  Aligned_cols=28  Identities=18%  Similarity=0.314  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|..|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eq2_A            9 GGKPYQCNECGKAFSQTSKLARHQRVHT   36 (46)
T ss_dssp             SSCSSSCCSSCCCCSSHHHHHHHGGGGC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcC
Confidence            3556999999999999999999987633

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.97  E-value=0.11  Score=33.91  Aligned_cols=28  Identities=14%  Similarity=0.248  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|..|+|.|....-+..|++.-+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2enh_A            9 GEKPYECDVCRKAFSHHASLTQHQRVHS   36 (46)
T ss_dssp             CSSSCBCTTTCCBCSSSHHHHHHGGGSC
T ss_pred             CCCCcCCCCcCchhCCHHHHHHHHHHhC
Confidence            3456999999999999999999987643

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.91  E-value=0.11  Score=33.74  Aligned_cols=28  Identities=18%  Similarity=0.278  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2enf_A            9 GEKPYKCNECGKVFTQNSHLVRHRGIHT   36 (46)
T ss_dssp             CCCSCBCSSSCCBCSSHHHHHHHHTTTT
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHhhC
Confidence            3556999999999999999999987533

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.89  E-value=0.12  Score=33.62  Aligned_cols=28  Identities=18%  Similarity=0.371  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2yth_A            9 GEKPFQCEECGKRFTQNSHLHSHQRVHT   36 (46)
T ss_dssp             CSSSBCCSSSCCCBSSHHHHHHHGGGGT
T ss_pred             CCcCCCCCCCCcccCCHHHHHHHHHhcC
Confidence            3556999999999999999999987633

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.88  E-value=0.1  Score=33.94  Aligned_cols=28  Identities=18%  Similarity=0.267  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|..|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ep3_A            9 GEKPYRCAECGKAFTDRSNLFTHQKIHT   36 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHTTTT
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcC
Confidence            3556999999999999999999997633

>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6

Probab=90.88  E-value=0.14  Score=39.16  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=29.4

Q ss_pred             CCeecCCCCccccc---ChhhHHhhhhhcchHHHHHhhc
Q psy4687         303 TDKWLCPLSGKKFK---GPDFIRKHIFNKHAEKVEEVKK  338 (339)
Q Consensus       303 e~K~rC~~C~KlFk---~~eFV~KHI~nKH~e~v~~v~~  338 (339)
                      +.+-.|++|+|.++   +-.=++.|++.+||+.+.++.+
T Consensus        27 ~~~a~Ck~C~~~l~~~g~TSnL~rHL~~~H~~e~~~~~~   65 (73)
T 2ct5_A           27 WKKIYCRICMAQIAYSGNTSNLSYHLEKNHPEEFCEFVK   65 (73)
T ss_dssp             SSCCEETTTTEECCCCSSTHHHHHHHHHSCHHHHHHHCC
T ss_pred             CCEEECCCCCccccCCCChHhHHHHHHHHCHHHHHHHHH
Confidence            36889999999976   3455889999999999887643

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.87  E-value=0.091  Score=34.32  Aligned_cols=28  Identities=18%  Similarity=0.121  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+-.|.|..|+|.|....-+..|++.-+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2eom_A            9 GERGHRCSDCGKFFLQASNFIQHRRIHT   36 (46)
T ss_dssp             CCSSCCCSSSCCCCSSHHHHHHHHHHHS
T ss_pred             CCCCcCCCCCCCeeCChHHHHHHHHHhC
Confidence            3557999999999999999999987643

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.86  E-value=0.1  Score=33.99  Aligned_cols=28  Identities=18%  Similarity=0.273  Sum_probs=24.1

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|++.-+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emf_A            9 GGKHFECTECGKAFTRKSTLSMHQKIHT   36 (46)
T ss_dssp             SSCCEECSSSCCEESCHHHHHHHGGGTS
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHhC
Confidence            3456999999999999999999997643

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=90.81  E-value=0.093  Score=33.23  Aligned_cols=28  Identities=21%  Similarity=0.334  Sum_probs=23.8

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         8 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~   35 (42)
T 2epc_A            8 GETPYLCGQCGKSFTQRGSLAVHQRSCS   35 (42)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTT
T ss_pred             CCCCeECCCCCcccCCHHHHHHHhhhcC
Confidence            3456999999999999999999987543

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.79  E-value=0.11  Score=33.65  Aligned_cols=28  Identities=18%  Similarity=0.166  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2epz_A            9 GEKPFDCIDCGKAFSDHIGLNQHRRIHT   36 (46)
T ss_dssp             CCCSBCCTTTCCCBSSHHHHHHHHTTTT
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHHHhC
Confidence            3557999999999999999999987543

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.77  E-value=0.11  Score=33.40  Aligned_cols=29  Identities=14%  Similarity=0.464  Sum_probs=24.3

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|..|+|.|.....+..|+..-+.
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   35 (43)
T 2yrm_A            7 GNGAFFCNECDCRFSEEASLKRHTLQTHS   35 (43)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHHHHHTC
T ss_pred             CCCCEECCCCCCeeCChHHHHHHHHhhCC
Confidence            34569999999999999999999876443

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.76  E-value=0.12  Score=33.53  Aligned_cols=27  Identities=19%  Similarity=0.134  Sum_probs=23.7

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eop_A            9 GEKPHECRECGKSFSFNSQLIVHQRIH   35 (46)
T ss_dssp             CCCSCBCTTTCCBCSSHHHHHHHHTTT
T ss_pred             CCCCeeCCCCCchhCCHHHHHHHHHHc
Confidence            355799999999999999999998763

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.66  E-value=0.11  Score=33.98  Aligned_cols=27  Identities=19%  Similarity=0.417  Sum_probs=23.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eon_A            9 GEKPYKCQVCGKAFRVSSHLVQHHSVH   35 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHTTTT
T ss_pred             CCcccCCCCCCcccCcHHHHHHHHHhc
Confidence            355799999999999999999998753

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.65  E-value=0.11  Score=33.50  Aligned_cols=28  Identities=18%  Similarity=0.248  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+-.|.|..|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (44)
T 2epv_A            9 GEKPYECNECGKAFIWKSLLIVHERTHA   36 (44)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHGGGS
T ss_pred             CCcCeECCCCCcccCchHHHHHHHhHhc
Confidence            3456999999999999999999987633

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.64  E-value=0.11  Score=33.69  Aligned_cols=29  Identities=17%  Similarity=0.318  Sum_probs=24.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|....-+..|+..-++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eml_A            9 GEKPYECSVCGKAFSHRQSLSVHQRIHSG   37 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHGGGSS
T ss_pred             CCCCeeCCCcCCccCCHHHHHHHHHHhcC
Confidence            35679999999999999999999876433

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.63  E-value=0.097  Score=33.67  Aligned_cols=27  Identities=15%  Similarity=0.321  Sum_probs=23.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|..|+|.|.....+..|+..-
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   33 (44)
T 2emx_A            7 GEKPFGCSCCEKAFSSKSYLLVHQQTH   33 (44)
T ss_dssp             SCCCEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCcCccCCCCCcccCCHHHHHHHHHHh
Confidence            355799999999999999999998763

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.61  E-value=0.11  Score=33.66  Aligned_cols=29  Identities=21%  Similarity=0.284  Sum_probs=24.3

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|....-+..|+..-++
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (46)
T 2eq4_A            9 GEKLYNCKECGKSFSRAPCLLKHERLHSG   37 (46)
T ss_dssp             CCCCCCBTTTTBCCSCHHHHHHHHHHCCS
T ss_pred             CCCCeECCCCCCccCchHHHHHHHHhcCC
Confidence            35569999999999999999999876433

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=90.57  E-value=0.11  Score=33.56  Aligned_cols=28  Identities=14%  Similarity=0.180  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|.....+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2el4_A            9 GVKPYGCSQCAKTFSLKSQLIVHQRSHT   36 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHGGGSS
T ss_pred             CCCceECCCCCchhCCHHHHHHHHHHhC
Confidence            3556999999999999999999987643

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.57  E-value=0.11  Score=33.57  Aligned_cols=27  Identities=19%  Similarity=0.404  Sum_probs=23.4

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yts_A            9 GEKPYICNECGKSFIQKSHLNRHRRIH   35 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHGGGT
T ss_pred             CCcCEECCCCChhhCChHHHHHHHHhc
Confidence            355799999999999999999998753

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.57  E-value=0.11  Score=33.78  Aligned_cols=28  Identities=18%  Similarity=0.424  Sum_probs=24.1

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytq_A            9 GEKPYGCSECGKAFSSKSYLIIHMRTHS   36 (46)
T ss_dssp             CCCSCBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             CCCCcCCCccChhhCChHHHHHHHHHhC
Confidence            3556999999999999999999987633

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.54  E-value=0.12  Score=33.49  Aligned_cols=28  Identities=18%  Similarity=0.252  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em7_A            9 GEKPYKCEECGKGFICRRDLYTHHMVHT   36 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHHHHHGGGGT
T ss_pred             CCcCccCCCccchhCCHHHHHHHHHHhC
Confidence            3557999999999999999999987643

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.53  E-value=0.1  Score=33.98  Aligned_cols=26  Identities=23%  Similarity=0.309  Sum_probs=23.1

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+..|.|+.|+|.|....-+..|+..
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em5_A            9 STKSHQCHECGRGFTLKSHLNQHQRI   34 (46)
T ss_dssp             CSCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCeECCcCCCccCCHHHHHHHHHH
Confidence            35569999999999999999999876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.52  E-value=0.11  Score=33.69  Aligned_cols=28  Identities=18%  Similarity=0.313  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytr_A            9 GEKPYKCNECGKAFSQTSKLARHQRIHT   36 (46)
T ss_dssp             SCCTTCCTTTCCCCSSHHHHHHHHTTTT
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHhcC
Confidence            3556999999999999999999987633

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.50  E-value=0.1  Score=33.88  Aligned_cols=27  Identities=19%  Similarity=0.436  Sum_probs=23.7

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ene_A            9 GEKPYKCNECGKVFRHNSYLSRHQRIH   35 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCeECCCCCchhCChHHHHHHHhhc
Confidence            355799999999999999999998763

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.49  E-value=0.096  Score=34.04  Aligned_cols=28  Identities=14%  Similarity=0.333  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|..|+|.|....-+..|+..-+
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2em3_A            9 GEKPYECKVCSKAFTQKAHLAQHQKTHT   36 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHHHC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHHhC
Confidence            3567999999999999999999997633

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.49  E-value=0.13  Score=33.44  Aligned_cols=28  Identities=14%  Similarity=0.152  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|++.-+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2elz_A            9 VEKPYKCEDCGKGYNRRLNLDMHQRVHM   36 (46)
T ss_dssp             CCSSCBCSSSCCBCSSHHHHHHHGGGGG
T ss_pred             CCCCeeCcccCchhCCHHHHHHHHHhcC
Confidence            3567999999999999999999987533

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.46  E-value=0.12  Score=33.11  Aligned_cols=28  Identities=14%  Similarity=0.190  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2eof_A            9 GEKPYECNECQKAFNTKSNLMVHQRTHT   36 (44)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHTT
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHHHhC
Confidence            3556999999999999999999987633

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.45  E-value=0.083  Score=34.25  Aligned_cols=28  Identities=18%  Similarity=0.271  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eq3_A            9 GEKPYECNQCGKAFSVRSSLTTHQAIHT   36 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHTTSC
T ss_pred             CCCCeECCCCChhhCCHHHHHHHHHHhC
Confidence            3556999999999999999999987643

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.45  E-value=0.13  Score=33.35  Aligned_cols=28  Identities=18%  Similarity=0.297  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2ytn_A            9 GKKPYKCNECGKVFTQNSHLARHRGIHT   36 (46)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHGGGTS
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHhhhcC
Confidence            3566999999999999999999987643

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.44  E-value=0.11  Score=33.81  Aligned_cols=27  Identities=15%  Similarity=0.178  Sum_probs=23.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|..|+|.|.....+..|+..-
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2en9_A            9 GKKLFKCNECKKTFTQSSSLTVHQRIH   35 (46)
T ss_dssp             SSCCCBCTTTCCBCSSHHHHHHHHHHH
T ss_pred             CCCCEECCccCcccCCHHHHHHHHHHc
Confidence            355699999999999999999998753

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.44  E-value=0.1  Score=33.78  Aligned_cols=28  Identities=18%  Similarity=0.350  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eow_A            9 GEKPYKCNECGKAFRARSSLAIHQATHS   36 (46)
T ss_dssp             CCCCEECTTSCCEESSHHHHHHHHHHHC
T ss_pred             CCCCeeccccCChhcCHHHHHHHHHHcC
Confidence            3556999999999999999999987533

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.38  E-value=0.15  Score=39.27  Aligned_cols=34  Identities=26%  Similarity=0.488  Sum_probs=29.6

Q ss_pred             CCeecCCCCccccc-------ChhhHHhhhhhcchHHHHHh
Q psy4687         303 TDKWLCPLSGKKFK-------GPDFIRKHIFNKHAEKVEEV  336 (339)
Q Consensus       303 e~K~rC~~C~KlFk-------~~eFV~KHI~nKH~e~v~~v  336 (339)
                      ..+-.|++|+|.|.       |-.=++.||+.+|++.++..
T Consensus        26 ~~~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~e~~~~   66 (76)
T 2djr_A           26 NQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREELEKS   66 (76)
T ss_dssp             CSCEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHHHHHHT
T ss_pred             CCEEECCCCCCccCCCCCCCCchHHHHHHHHHHCHHHHHhc
Confidence            45889999999998       56789999999999998763

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=90.38  E-value=0.14  Score=33.26  Aligned_cols=27  Identities=19%  Similarity=0.319  Sum_probs=23.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2em0_A            9 GEKTWKCRECDMCFSQASSLRLHQNVH   35 (46)
T ss_dssp             CCCCCCCSSSCCCCSSHHHHHHHGGGG
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHHc
Confidence            355699999999999999999998763

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=90.32  E-value=0.11  Score=33.83  Aligned_cols=27  Identities=19%  Similarity=0.327  Sum_probs=23.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emk_A            9 GEKPYECKECGKAFSQTTHLIQHQRVH   35 (46)
T ss_dssp             SSCSCBCSSSCCBCSCHHHHHHHHHHH
T ss_pred             CCCceECCCCCchhCCHHHHHHHHHHc
Confidence            345699999999999999999999763

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.31  E-value=0.12  Score=32.59  Aligned_cols=26  Identities=12%  Similarity=0.231  Sum_probs=23.0

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhc
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      +..|.|+.|+|.|....-+..|+..-
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~H   33 (42)
T 2yte_A            8 EKPYSCAECKETFSDNNRLVQHQKMH   33 (42)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHHh
Confidence            45699999999999999999998763

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=90.24  E-value=0.11  Score=33.77  Aligned_cols=27  Identities=19%  Similarity=0.272  Sum_probs=23.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2emj_A            9 GEKPFECAECGKSFSISSQLATHQRIH   35 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHHHH
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHHh
Confidence            355699999999999999999998763

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=90.23  E-value=0.13  Score=33.28  Aligned_cols=27  Identities=22%  Similarity=0.349  Sum_probs=23.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em9_A            9 GEKPYNCKECGKSFRWASCLLKHQRVH   35 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHGGGG
T ss_pred             CCcCeECCccccccCChHHHHHHHHHh
Confidence            356799999999999999999998763

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.22  E-value=0.11  Score=33.87  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=23.8

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|.....+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2em4_A            9 GQRPYECIECGKAFKTKSSLICHRRSHT   36 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHhcC
Confidence            3456999999999999999999987543

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.22  E-value=0.12  Score=33.68  Aligned_cols=27  Identities=15%  Similarity=0.205  Sum_probs=23.4

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      +..|.|+.|+|.|.....+..|++.-+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eoh_A           10 KKPYECKECRKTFIQIGHLNQHKRVHT   36 (46)
T ss_dssp             SCSCCCSSSCCCCSSHHHHHHHHHHCS
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHHHhC
Confidence            456999999999999999999987633

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.21  E-value=0.13  Score=33.42  Aligned_cols=27  Identities=19%  Similarity=0.425  Sum_probs=23.3

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em6_A            9 GEKCYKCDVCGKEFSQSSHLQTHQRVH   35 (46)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHTTT
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHc
Confidence            355699999999999999999998653

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=90.20  E-value=0.12  Score=33.58  Aligned_cols=28  Identities=18%  Similarity=0.323  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ema_A            9 GEKRYKCNECGKVFSRNSQLSQHQKIHT   36 (46)
T ss_dssp             TSCCEECSSSCCEESSHHHHHHHHTGGG
T ss_pred             CCcCcCCCCCcchhCCHHHHHHHHHhcC
Confidence            3557999999999999999999987633

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.19  E-value=0.12  Score=33.50  Aligned_cols=28  Identities=21%  Similarity=0.294  Sum_probs=23.7

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eov_A            9 GEKPYKCSDCGKSFTWKSRLRIHQKCHT   36 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCccCCccChhhCCHHHHHHHHHhcC
Confidence            3456999999999999999999986533

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.16  E-value=0.11  Score=33.66  Aligned_cols=27  Identities=22%  Similarity=0.333  Sum_probs=23.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytj_A            9 GEKPYICAECGKAFTIRSNLIKHQKIH   35 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCcCeECCCCChhhCCHHHHHHHHHHc
Confidence            355699999999999999999998753

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.16  E-value=0.12  Score=33.54  Aligned_cols=28  Identities=18%  Similarity=0.414  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+-.|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2eq0_A            9 GEKPYKCHECGKVFRRNSHLARHQLIHT   36 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHTTTC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcC
Confidence            3567999999999999999999987633

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.13  E-value=0.11  Score=33.69  Aligned_cols=27  Identities=19%  Similarity=0.234  Sum_probs=23.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|.....+..|+..-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2emm_A            9 GERPHKCNECGKSFIQSAHLIQHQRIH   35 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCeeCCCCChhhCCHHHHHHHHHHh
Confidence            355799999999999999999998763

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.10  E-value=0.13  Score=33.25  Aligned_cols=28  Identities=18%  Similarity=0.311  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2eme_A            9 GEKPYVCDYCGKAFGLSAELVRHQRIHT   36 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHGGGC
T ss_pred             CCCCeECCCCChhhCCHHHHHHHHHhcC
Confidence            3556999999999999999999997533

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.10  E-value=0.14  Score=32.93  Aligned_cols=27  Identities=11%  Similarity=0.262  Sum_probs=23.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|.....+..|+..-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2emb_A            9 TRKRYECSKCQATFNLRKHLIQHQKTH   35 (44)
T ss_dssp             CCSSEECTTTCCEESCHHHHHHHGGGG
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHc
Confidence            345699999999999999999999753

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.07  E-value=0.12  Score=33.50  Aligned_cols=28  Identities=14%  Similarity=0.274  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytg_A            9 GEKPFKCGECGKSYNQRVHLTQHQRVHT   36 (46)
T ss_dssp             SCCSEECTTTCCEESSSHHHHTTGGGGS
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcC
Confidence            3567999999999999999999987543

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=90.03  E-value=0.14  Score=33.35  Aligned_cols=28  Identities=18%  Similarity=0.248  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2el6_A            9 GVNPYKCSQCEKSFSGKLRLLVHQRMHT   36 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcC
Confidence            3556999999999999999999987643

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.01  E-value=0.082  Score=34.04  Aligned_cols=28  Identities=18%  Similarity=0.281  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|..|+|.|.....+..|+..-+
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~   36 (44)
T 2eox_A            9 DSKSYNCNECGKAFTRIFHLTRHQKIHT   36 (44)
T ss_dssp             CCCCEEETTTTEEESSSHHHHTTHHHHC
T ss_pred             CCCCeECcccCcccCCHHHHHHHHHHhC
Confidence            3556999999999999999999987643

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.00  E-value=0.11  Score=32.08  Aligned_cols=25  Identities=20%  Similarity=0.386  Sum_probs=22.0

Q ss_pred             CCeecCCCCcccccCh-hhHHhhhhh
Q psy4687         303 TDKWLCPLSGKKFKGP-DFIRKHIFN  327 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~-eFV~KHI~n  327 (339)
                      +-.|.|+.|+|.|... .-+..|+..
T Consensus         7 ~k~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            7 GRAMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             CCCEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CCCeECCCCChhhccCHHHHHHHHHh
Confidence            4569999999999999 999999865

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.98  E-value=0.13  Score=33.13  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=23.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|..|+|.|....-+..|++.-
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (44)
T 2eou_A            9 AKTTSECQECGKIFRHSSLLIEHQALH   35 (44)
T ss_dssp             SSCCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHHH
Confidence            355799999999999999999998763

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.98  E-value=0.11  Score=33.74  Aligned_cols=26  Identities=19%  Similarity=0.310  Sum_probs=23.2

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+..|.|+.|+|.|....-+..|+..
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yto_A            9 GEKPYKCSDCGKAFTRKSGLHIHQQS   34 (46)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCEECcccCCccCCHhHHHHHHHH
Confidence            35569999999999999999999876

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.96  E-value=0.13  Score=33.43  Aligned_cols=27  Identities=15%  Similarity=0.226  Sum_probs=23.7

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ep0_A            9 GEKPYKCDVCHKSFRYGSSLTVHQRIH   35 (46)
T ss_dssp             TCCSEECSSSCCEESSHHHHHHHHTTT
T ss_pred             CCCCeeCcccCcccCChHHHHHHHHHh
Confidence            456799999999999999999998753

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=89.93  E-value=0.42  Score=38.96  Aligned_cols=73  Identities=19%  Similarity=0.299  Sum_probs=54.5

Q ss_pred             CCCeEEeeecCCC--C---CHHHHHHHHhhcCCeeEEEecCCCCC----CCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          33 RTSSIFLRNLAPT--I---TKAEVENLCKRYSGFLRVAIADPQPD----RRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        33 ~t~slfIk~IpP~--i---sr~ele~~ck~~~GF~~lsLSDP~p~----krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      .|..|+|+|+--.  +   -.++|.+.|.+++....+.+-.+...    .+---.|+|.|....++..|+..||+..+.+
T Consensus        19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G   98 (118)
T 3ue2_A           19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG   98 (118)
T ss_dssp             SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence            4778999998421  1   26889999999999999988655432    1122468999999999999999999877665


Q ss_pred             cc
Q psy4687         104 CE  105 (339)
Q Consensus       104 ~e  105 (339)
                      -.
T Consensus        99 R~  100 (118)
T 3ue2_A           99 RK  100 (118)
T ss_dssp             EE
T ss_pred             cE
Confidence            33

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.92  E-value=0.1  Score=33.81  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=23.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+..|.|..|+|.|....-+..|+..
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eor_A            9 GEKPYNCEECGKAFIHDSQLQEHQRI   34 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCcCccCCCCCCCcCCHHHHHHHHHh
Confidence            35569999999999999999999875

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.89  E-value=0.11  Score=33.91  Aligned_cols=27  Identities=22%  Similarity=0.498  Sum_probs=23.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|++.-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ytt_A            9 GEKPYQCSECGKSFSGSYRLTQHWITH   35 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHHHHHHHHTHH
T ss_pred             CCCCeeCCCCCcccCCHHHHHHHHHHc
Confidence            355699999999999999999998763

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.86  E-value=0.13  Score=33.45  Aligned_cols=28  Identities=18%  Similarity=0.265  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2emy_A            9 GENPYECHECGKAFSRKYQLISHQRTHA   36 (46)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHHT
T ss_pred             CCcCcCCCCCCcccCcHHHHHHHHHHcC
Confidence            3456999999999999999999987633

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.83  E-value=0.1  Score=33.84  Aligned_cols=26  Identities=23%  Similarity=0.443  Sum_probs=23.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+..|.|..|+|.|....-+..|+..
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emh_A            9 GERPYICTVCGKAFTDRSNLIKHQKI   34 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHh
Confidence            35569999999999999999999875

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.81  E-value=0.12  Score=33.13  Aligned_cols=29  Identities=10%  Similarity=0.335  Sum_probs=24.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|....-+..|+..-+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (44)
T 2yu5_A            9 GENPFKCSKCDRVFTQRNYLVQHERTHAR   37 (44)
T ss_dssp             CCCSEECSSSSCEESSSHHHHHHHHHCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHhHhcCC
Confidence            35579999999999999999999876443

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.79  E-value=0.12  Score=33.48  Aligned_cols=27  Identities=19%  Similarity=0.309  Sum_probs=23.3

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2yti_A            9 GEKPYKCNECGKVFTQNSHLARHRGIH   35 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHHHHHHHHTTT
T ss_pred             CCcCeECCCCCcccCChhHHHHHhHhc
Confidence            355699999999999999999998653

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.78  E-value=0.09  Score=40.36  Aligned_cols=42  Identities=21%  Similarity=0.350  Sum_probs=30.7

Q ss_pred             HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchHH
Q psy4687         289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAEK  332 (339)
Q Consensus       289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~  332 (339)
                      .+...+..+..  .+..|.|..|+|.|....-+..|++..|.++
T Consensus        40 ~L~~H~~~h~~--~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~k   81 (98)
T 2gqj_A           40 GLKKHMEVCQK--LQDALKCQHCRKQFKSKAGLNYHTMAEHSAK   81 (98)
T ss_dssp             HHHHHHHHHHH--HHHHHSCSSSCCCCSCHHHHHHHHHHHSCSC
T ss_pred             HHHHHHHHHcC--CCCCEECCCCCCccCCHHHHHHHHHHHcCCC
Confidence            34444444332  1346899999999999999999999888764

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.72  E-value=0.11  Score=33.31  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=23.4

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      +..|.|+.|+|.|....-+..|+..-+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (44)
T 2eoj_A           10 ENPYECCECGKVFSRKDQLVSHQKTHS   36 (44)
T ss_dssp             CCSCEETTTTEECSSHHHHHHHHTTSS
T ss_pred             CcCeeCCCCCCccCCHHHHHHHHHHcC
Confidence            456999999999999999999987633

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.70  E-value=0.1  Score=33.83  Aligned_cols=26  Identities=19%  Similarity=0.347  Sum_probs=23.1

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+..|.|+.|+|.|....-+..|+..
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emp_A            9 GVKPYMCNECGKAFSVYSSLTTHQVI   34 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCcCeECCCCCchhCCHHHHHHHHHH
Confidence            35569999999999999999999875

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.68  E-value=0.12  Score=33.46  Aligned_cols=28  Identities=18%  Similarity=0.307  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ytk_A            9 GEKPYKCNECGKVFTQNSHLTNHWRIHT   36 (46)
T ss_dssp             SSCSEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             CCCCEeCCcCCCccCCHHHHHHHHHHHC
Confidence            3567999999999999999999987533

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=89.68  E-value=0.13  Score=37.16  Aligned_cols=30  Identities=23%  Similarity=0.534  Sum_probs=26.4

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .+..|.|+.|+|.|....-+..|+...|.+
T Consensus        12 ~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~   41 (77)
T 2ct1_A           12 GEKPYECYICHARFTQSGTMKMHILQKHTE   41 (77)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CCCCeECCCcCchhCCHHHHHHHHHHhcCC
Confidence            355699999999999999999999988864

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.64  E-value=0.13  Score=33.44  Aligned_cols=26  Identities=19%  Similarity=0.376  Sum_probs=23.3

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+..|.|..|+|.|....-+..|+..
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2eoo_A            9 GERPYGCNECGKNFGRHSHLIEHLKR   34 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCEEccccCcccCCHHHHHHHHHH
Confidence            35569999999999999999999876

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.51  E-value=0.11  Score=33.80  Aligned_cols=28  Identities=18%  Similarity=0.342  Sum_probs=24.1

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2en6_A            9 GEKPYGCNECGKTFSQKSILSAHQRTHT   36 (46)
T ss_dssp             SSCCEEETTTTEEESSHHHHHHHHHHHS
T ss_pred             CCcCeECCCCCcccCchHHHHHHHHHcC
Confidence            3557999999999999999999987633

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.49  E-value=0.14  Score=33.20  Aligned_cols=27  Identities=22%  Similarity=0.525  Sum_probs=23.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eoq_A            9 GEKPFKCDICGKSFCGRSRLNRHSMVH   35 (46)
T ss_dssp             SSCSCCCSSSCCCCSSHHHHHHHHHHT
T ss_pred             CCCCcCCCcCCchhCCHHHHHHHHHHc
Confidence            355799999999999999999998763

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=89.47  E-value=0.17  Score=35.23  Aligned_cols=28  Identities=11%  Similarity=0.347  Sum_probs=25.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+...|
T Consensus         7 ~~k~~~C~~C~k~f~~~~~l~~H~~~~H   34 (66)
T 2drp_A            7 GEHTYRCKVCSRVYTHISNFCRHYVTSH   34 (66)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             CCcceECCCCcchhCCHHHHHHHHHHHc
Confidence            4678999999999999999999999877

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.39  E-value=0.16  Score=33.06  Aligned_cols=27  Identities=15%  Similarity=0.290  Sum_probs=23.4

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|.....+..|+..-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2eoy_A            9 KEKCFKCNKCEKTFSCSKYLTQHERIH   35 (46)
T ss_dssp             CSCCEECSSSCCEESSSHHHHHHHTTC
T ss_pred             CCCCEECcCCCCcCCCHHHHHHHHHHc
Confidence            345699999999999999999998653

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=89.31  E-value=0.16  Score=34.49  Aligned_cols=29  Identities=21%  Similarity=0.364  Sum_probs=24.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|....-+..|+..-+.
T Consensus        21 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   49 (54)
T 1yui_A           21 SEQPATCPICYAVIRQSRNLRRHLELRHF   49 (54)
T ss_dssp             SSCCEECTTTCCEESSHHHHHHHHHHHTT
T ss_pred             CCCCccCCCCCcccCCHHHHHHHHHHhcc
Confidence            35569999999999999999999876443

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=89.29  E-value=0.11  Score=35.06  Aligned_cols=27  Identities=19%  Similarity=0.434  Sum_probs=21.8

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      +..|.|+.|+|.|.....+..|+..-+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~   28 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHT   28 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHH
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcC
Confidence            356999999999999999999998633

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.25  E-value=0.14  Score=33.33  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=23.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2em2_A            9 GEKPFKCKECGKAFRQNIHLASHLRIH   35 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCCCEECCcCCchhCCHHHHHHHHHHh
Confidence            355699999999999999999998763

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.24  E-value=0.14  Score=33.23  Aligned_cols=28  Identities=18%  Similarity=0.336  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2en1_A            9 GEKPFKCEECGKRFTQNSQLHSHQRVHT   36 (46)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGGGS
T ss_pred             CCCCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            3556999999999999999999987633

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.21  E-value=0.16  Score=32.85  Aligned_cols=28  Identities=21%  Similarity=0.201  Sum_probs=23.8

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2en8_A            9 GEKSHTCDECGKNFCYISALRIHQRVHM   36 (46)
T ss_dssp             CCSSEECTTTCCEESSHHHHHHHHTTTC
T ss_pred             CCCCeECCCcCcccCCHHHHHHHHHHhC
Confidence            3556999999999999999999986533

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.17  E-value=0.16  Score=32.95  Aligned_cols=28  Identities=18%  Similarity=0.361  Sum_probs=24.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ep2_A            9 GEKPYECSICGKSFTKKSQLHVHQQIHT   36 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHTTS
T ss_pred             CCcCcCCCCCCcccCCHHHHHHHHHHhC
Confidence            3556999999999999999999987533

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=89.15  E-value=0.57  Score=37.96  Aligned_cols=70  Identities=13%  Similarity=0.122  Sum_probs=52.6

Q ss_pred             CCCeEEeeecCCCC----------CHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc
Q psy4687          33 RTSSIFLRNLAPTI----------TKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR  102 (339)
Q Consensus        33 ~t~slfIk~IpP~i----------sr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~  102 (339)
                      .|..|.|+|+=-.-          -.++|.+.|.+++....+.+-.+. .+.|   |+|.|....++..|+..||+..+.
T Consensus         6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~---~fV~f~~~e~A~~Ai~~lnG~~f~   81 (114)
T 3s6e_A            6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGN---VYVKCPSIAAAIAAVNALHGRWFA   81 (114)
T ss_dssp             CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCC---EEEECSSHHHHHHHHHHHTTCEET
T ss_pred             CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEE---EEEEECCHHHHHHHHHHhCCCEEC
Confidence            46677777764322          245778899999999999995443 3554   999999999999999999987776


Q ss_pred             Cccc
Q psy4687         103 DCEL  106 (339)
Q Consensus       103 d~el  106 (339)
                      +-.+
T Consensus        82 GR~i   85 (114)
T 3s6e_A           82 GKMI   85 (114)
T ss_dssp             TEEC
T ss_pred             CEEE
Confidence            6443

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.11  E-value=0.13  Score=33.40  Aligned_cols=28  Identities=14%  Similarity=0.216  Sum_probs=24.1

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~   36 (46)
T 2ysp_A            9 GEKPYKCEKCGKGYNSKFNLDMHQKVHT   36 (46)
T ss_dssp             SCCSEEETTTTEEESCHHHHHHHHTTSC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHhhC
Confidence            4567999999999999999999987633

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.08  E-value=0.14  Score=33.24  Aligned_cols=26  Identities=19%  Similarity=0.299  Sum_probs=22.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+..|.|..|+|.|....-+..|+..
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2en3_A            9 GEKPFQCKECGMNFSWSCSLFKHLRS   34 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHHH
T ss_pred             CCCCeeCcccChhhCCHHHHHHHHHH
Confidence            34569999999999999999999865

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=89.03  E-value=0.21  Score=33.95  Aligned_cols=29  Identities=31%  Similarity=0.636  Sum_probs=24.8

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|....-+..|++..|.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   37 (54)
T 2eps_A            9 VGKPYICQSCGKGFSRPDHLNGHIKQVHT   37 (54)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHhcC
Confidence            34569999999999999999999986664

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=89.01  E-value=0.16  Score=32.99  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=23.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|++.-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2ely_A            9 GEKPFKCVECGKGFSRRSALNVHHKLH   35 (46)
T ss_dssp             CCCSBCCSSSCCCBSSTTHHHHHHHHH
T ss_pred             CCCCcccCccCcccCCHHHHHHHHHHc
Confidence            355799999999999999999998763

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.98  E-value=0.13  Score=33.51  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=23.2

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+-.|.|+.|+|.|....-+..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytm_A            9 GEKPYKCMECGKAFGDNSSCTQHQRL   34 (46)
T ss_dssp             SCCSSSBTTTTBCCSSHHHHHHHHHH
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHH
Confidence            35579999999999999999999876

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=88.97  E-value=0.14  Score=36.70  Aligned_cols=40  Identities=18%  Similarity=0.408  Sum_probs=28.7

Q ss_pred             HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .+...++.+.   .+..|.|+.|+|.|....-+..|++.-+++
T Consensus        32 ~l~~H~~~H~---~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~   71 (74)
T 2lce_A           32 NLASHKTVHT---GEKPYRCNICGAQFNRPANLKTHTRIHSGE   71 (74)
T ss_dssp             HHHHHHHHHC---CCCSEECTTTCCEESCHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHcC---CCCCEECCCCCchhCCHHHHHHHHHhcCCC
Confidence            3444444332   345699999999999999999998765543

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.96  E-value=0.16  Score=32.97  Aligned_cols=27  Identities=15%  Similarity=0.111  Sum_probs=23.4

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|..|+|.|....-+..|+..-
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2yso_A            9 REKSHQCRECGEIFFQYVSLIEHQVLH   35 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             CCCCEEccccChhhCCHHHHHHHHHHh
Confidence            345699999999999999999998763

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=88.90  E-value=0.049  Score=32.98  Aligned_cols=23  Identities=35%  Similarity=0.648  Sum_probs=20.7

Q ss_pred             eecCCCCcccccChhhHHhhhhh
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .|.|+.|+|.|.....+..|+..
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~   24 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKT   24 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTS
T ss_pred             CCCCCCCCcccCCHHHHHHHHHH
Confidence            37899999999999999999865

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.90  E-value=0.18  Score=32.72  Aligned_cols=26  Identities=19%  Similarity=0.330  Sum_probs=23.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+-.|.|+.|+|.|....-+..|+..
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emz_A            9 GERPFKCNECGKGFGRRSHLAGHLRL   34 (46)
T ss_dssp             CCCSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHH
Confidence            35569999999999999999999875

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=88.83  E-value=0.18  Score=39.12  Aligned_cols=40  Identities=15%  Similarity=0.350  Sum_probs=30.9

Q ss_pred             HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .+...+..+.   .+..|.|+.|+|.|....-+.+|+...|+.
T Consensus        81 ~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           81 ELRLHMVSHT---GEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             HHHHHHHHHS---SSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHcC---CCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            4444444332   345699999999999999999999999975

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.77  E-value=0.17  Score=32.74  Aligned_cols=27  Identities=19%  Similarity=0.173  Sum_probs=23.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+..|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H   35 (46)
T 2epw_A            9 GEKPCKCTECGKAFCWKSQLIMHQRTH   35 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHHHC
T ss_pred             CCCCeeCCCCCCccCCHHHHHHHHHHh
Confidence            345699999999999999999998763

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.77  E-value=0.15  Score=33.00  Aligned_cols=28  Identities=18%  Similarity=0.301  Sum_probs=23.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~   36 (46)
T 2eoe_A            9 GEKPYKCNECGKVFTQNSHLANHQRIHT   36 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHGGGS
T ss_pred             CCCCeECCCcChhhCCHHHHHHHHHHcC
Confidence            3557999999999999999999987533

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=88.75  E-value=0.12  Score=33.43  Aligned_cols=29  Identities=24%  Similarity=0.564  Sum_probs=24.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+-.|.|+.|+|.|....-+..|++.-+.
T Consensus         7 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   35 (45)
T 2epq_A            7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDG   35 (45)
T ss_dssp             SCCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCCCcCCCCCcccCCHHHHHHHHHHccC
Confidence            45579999999999999999999876443

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=88.74  E-value=0.15  Score=36.49  Aligned_cols=38  Identities=16%  Similarity=0.161  Sum_probs=27.9

Q ss_pred             HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+...++.+.   .+..|.|+.|+|.|....-+..|++.-+
T Consensus        29 ~L~~H~~~h~---~~~~~~C~~C~~~f~~~~~L~~H~~~H~   66 (72)
T 1x6e_A           29 ILVQHQRVHT---GEKPYKCLECGKAFSQNSGLINHQRIHT   66 (72)
T ss_dssp             HHHHHHHGGG---CSCCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC---CCCCeECCCCCcccCCHHHHHHHHHhcC
Confidence            3444444332   3456999999999999999999987644

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=88.62  E-value=0.22  Score=29.40  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=21.5

Q ss_pred             eecCC--CCcccccChhhHHhhhhhc
Q psy4687         305 KWLCP--LSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       305 K~rC~--~C~KlFk~~eFV~KHI~nK  328 (339)
                      .|.|.  .|+|.|....-+..|+..-
T Consensus         3 ~~~C~~~~C~k~f~~~~~L~~H~~~H   28 (32)
T 1zfd_A            3 PYSCDHPGCDKAFVRNHDLIRHKKSH   28 (32)
T ss_dssp             SBCCCCTTCCCCBSSSHHHHHHHGGG
T ss_pred             CCcCcCCCCCCccCCHHHHHHHHHHc
Confidence            58998  8999999999999998763

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=88.56  E-value=0.19  Score=29.60  Aligned_cols=25  Identities=24%  Similarity=0.611  Sum_probs=21.7

Q ss_pred             eecCC--CCcccccChhhHHhhhhhcc
Q psy4687         305 KWLCP--LSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       305 K~rC~--~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .|.|+  .|+|.|....-+..|+..-.
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            47897  99999999999999997643

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.40  E-value=0.14  Score=32.36  Aligned_cols=26  Identities=19%  Similarity=0.493  Sum_probs=22.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+-.|.|+.|+|.|....-+..|+..
T Consensus         8 ~~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2en2_A            8 GEKPYKCETCGARFVQVAHLRAHVLI   33 (42)
T ss_dssp             SSCSEECTTTCCEESSHHHHHHHTHH
T ss_pred             CCCCEeCCCcChhhCCHHHHHHHHHH
Confidence            34569999999999999999999874

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=88.38  E-value=0.2  Score=33.73  Aligned_cols=26  Identities=31%  Similarity=0.689  Sum_probs=22.8

Q ss_pred             eecCCCCcccccChhhHHhhhhhcch
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .|.|+.|+|.|....-+..|+..-+.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~   26 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTD   26 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCC
Confidence            48999999999999999999987443

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.27  E-value=0.15  Score=33.12  Aligned_cols=26  Identities=19%  Similarity=0.178  Sum_probs=23.2

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+..|.|+.|+|.|....-+..|++.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em8_A            9 GEKPYKCVECGKGYKRRLDLDFHQRV   34 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCeECcccCchhCCHHHHHHHHHH
Confidence            35679999999999999999999875

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.12  E-value=0.2  Score=32.43  Aligned_cols=27  Identities=19%  Similarity=0.238  Sum_probs=23.4

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+-.|.|+.|+|.|....-+..|+..-
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H   35 (46)
T 2enc_A            9 GEKPFKCEECGKGFYTNSQCYSHQRSH   35 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCCCcCCCCCCCcCCChHHHHHHHHHh
Confidence            345699999999999999999998753

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.98  E-value=2.1  Score=33.79  Aligned_cols=60  Identities=15%  Similarity=0.116  Sum_probs=45.2

Q ss_pred             CCeEEeeecC-------CCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc
Q psy4687          34 TSSIFLRNLA-------PTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN   98 (339)
Q Consensus        34 t~slfIk~Ip-------P~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~   98 (339)
                      ...|.|+-.+       ++++.++|.+++.+++....+.|.  -..|   ..|+|.|....++..|+..+++
T Consensus        10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~r---GfaFVeF~~~~~A~~Ai~~~~~   76 (100)
T 2d9o_A           10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKP---GTAVVEFATVKAAELAVQNEVG   76 (100)
T ss_dssp             SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSS---SEEEEEESCHHHHHHHHHTCCB
T ss_pred             cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCC---CEEEEEECCHHHHHHHHHhcCC
Confidence            3455566554       679999999999999999998886  1222   3699999999888877765443

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=87.85  E-value=0.23  Score=28.27  Aligned_cols=23  Identities=17%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             eecCC--CCcccccChhhHHhhhhh
Q psy4687         305 KWLCP--LSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       305 K~rC~--~C~KlFk~~eFV~KHI~n  327 (339)
                      .|.|+  .|+|.|....-+..|++.
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            47899  999999999999999865

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=87.73  E-value=0.21  Score=39.62  Aligned_cols=31  Identities=29%  Similarity=0.494  Sum_probs=26.9

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcchHHH
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAEKV  333 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~v  333 (339)
                      +..|.|+.|+|.|....-+..|++..|++.|
T Consensus        98 ~~~~~C~~C~k~f~~~~~l~~H~~~h~~~~v  128 (129)
T 2wbt_A           98 EHTKVCPVCKKEFTSTDSALDHVCKKHNICV  128 (129)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHHHTTCCCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHHCCccC
Confidence            5569999999999999999999999887643

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.55  E-value=0.21  Score=32.36  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=22.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+..|.|+.|+|.|....-+..|+..
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytd_A            9 GEKPYKCSECGKAFHRHTHLNEHRRI   34 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcCeECCCCCCeeCChHHHHHHHHH
Confidence            34569999999999999999999865

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.48  E-value=0.23  Score=35.87  Aligned_cols=29  Identities=17%  Similarity=0.248  Sum_probs=24.5

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      +..|.|+.|+|.|.....+..|++.-+++
T Consensus        44 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   72 (77)
T 2cot_A           44 EKPYKCDECGKAFIQRSHLIGHHRVHTGS   72 (77)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHGGGSCCC
T ss_pred             CcCeeCCCCCCccCCHHHHHHHHHHhCCC
Confidence            45699999999999999999999865544

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=87.41  E-value=0.24  Score=35.57  Aligned_cols=38  Identities=21%  Similarity=0.368  Sum_probs=28.6

Q ss_pred             HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+...+..++   .+-.|.|+.|+|.|....-+..|++. |.
T Consensus        19 ~L~~H~~~Ht---~ekp~~C~~C~k~F~~~~~L~~H~~~-Ht   56 (60)
T 4gzn_C           19 GLSRHRRAHL---GYRPRSCPECGKCFRDQSEVNRHLKV-HQ   56 (60)
T ss_dssp             HHHHHHHHHH---TCCCEECTTTCCEESSHHHHHHHGGG-GS
T ss_pred             HHHHHHHHhC---CCcCeECCCCCCCcCCHHHHHHHhCc-cC
Confidence            3444455443   35579999999999999999999875 54

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.40  E-value=0.28  Score=37.91  Aligned_cols=29  Identities=14%  Similarity=0.273  Sum_probs=26.1

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      +..|.|+.|+|.|....-+.+|++..|..
T Consensus        78 ~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           78 QKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             CcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            45699999999999999999999988864

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.40  E-value=0.21  Score=38.74  Aligned_cols=40  Identities=15%  Similarity=0.391  Sum_probs=31.1

Q ss_pred             HHHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         288 AEVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       288 eevek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      ..+...+..+    .+..|.|..|+|.|....-+..|+...|.+
T Consensus        49 ~~L~~H~~~h----~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~   88 (96)
T 2ctd_A           49 EGLKKHMENC----KQEMFTCHHCGKQLRSLAGMKYHVMANHNS   88 (96)
T ss_dssp             HHHHHHHHHH----CCCCCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHH----CCCCeECCCCCCeeCCHHHHHHHhHHhcCC
Confidence            3455555543    456799999999999999999997777864

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=87.30  E-value=0.23  Score=35.55  Aligned_cols=29  Identities=14%  Similarity=0.188  Sum_probs=25.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|....-+..|+..-+.
T Consensus        14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~   42 (74)
T 2lce_A           14 SDKPYKCDRCQASFRYKGNLASHKTVHTG   42 (74)
T ss_dssp             CCCSBCCTTSSCCBSCHHHHHHHHHHHCC
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHHHcCC
Confidence            46779999999999999999999976443

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=87.24  E-value=0.31  Score=35.71  Aligned_cols=30  Identities=20%  Similarity=0.420  Sum_probs=25.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .+..|.|+.|+|.|....-+.+|++.-+++
T Consensus        59 ~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~   88 (90)
T 1a1h_A           59 GEKPFACDICGRKFARSDERKRHTKIHLRQ   88 (90)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHGGGGC-
T ss_pred             CCCCccCCCCCchhCCHHHHHHHHHHhccc
Confidence            355699999999999999999999876554

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.09  E-value=0.36  Score=37.00  Aligned_cols=33  Identities=15%  Similarity=0.287  Sum_probs=28.2

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchHHHH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVE  334 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~v~  334 (339)
                      .+..|.|+.|+|.|....-+.+|++.-|+..-.
T Consensus        62 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~   94 (110)
T 2csh_A           62 GIKPYECNICAKRFMWRDSFHRHVTSCTKSYEA   94 (110)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeeCCCCcchhcCHHHHHHHHHHccccccc
Confidence            345799999999999999999999998876543

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=87.06  E-value=0.27  Score=36.62  Aligned_cols=30  Identities=7%  Similarity=0.231  Sum_probs=26.1

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .+..|.|+.|+|.|....-+.+|++.-|++
T Consensus        61 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   90 (96)
T 2dmd_A           61 DERPFKCQICPYASRNSSQLTVHLRSHTGD   90 (96)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCCCccCCCCCCccCCHHHHHHHHHHhcCC
Confidence            345699999999999999999999987765

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=87.04  E-value=0.24  Score=33.76  Aligned_cols=25  Identities=12%  Similarity=0.522  Sum_probs=22.4

Q ss_pred             eecCCCCcccccChhhHHhhhhhcc
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .|.|+.|+|.|....-+..|+..-+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~   26 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRSHT   26 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             cCcCCCCccccCCHHHHHHHHHHhC
Confidence            4899999999999999999998744

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=87.03  E-value=0.25  Score=35.87  Aligned_cols=28  Identities=21%  Similarity=0.420  Sum_probs=25.4

Q ss_pred             CeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         304 DKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       304 ~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      ..|.|+.|+|.|....-+..|++.-|.+
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~   73 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHADNCAGP   73 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             cceECCCCCChhCCHHHHHHHHHHccCC
Confidence            5699999999999999999999988765

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=86.90  E-value=0.23  Score=32.65  Aligned_cols=29  Identities=17%  Similarity=0.457  Sum_probs=24.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|..|+|.|....-+..|++.-+.
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~   37 (48)
T 2epr_A            9 TRKQVACEICGKIFRDVYHLNRHKLSHSG   37 (48)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGGSCS
T ss_pred             CCcCeeCCCCCcccCCHHHHHHHHHhcCC
Confidence            45679999999999999999999876443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=86.70  E-value=0.33  Score=34.43  Aligned_cols=36  Identities=22%  Similarity=0.474  Sum_probs=26.8

Q ss_pred             HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhh
Q psy4687         289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+...+..+.   .+..|.|+.|+|.|....-+..|++.
T Consensus        36 ~l~~H~~~h~---~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           36 ELTRHIRIHT---GQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             HHHHHHHHHH---CCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             HHHHHHHhhC---CCCCeECCCCCchhCCHHHHHHHHHh
Confidence            4444444332   35569999999999999999999864

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.69  E-value=0.21  Score=32.36  Aligned_cols=26  Identities=19%  Similarity=0.346  Sum_probs=22.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+..|.|+.|+|.|....-+..|+..
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yu8_A            9 GEKPYKCNECGKVFTQNSHLARHRRV   34 (46)
T ss_dssp             CCSSEECSSSCCEESSSHHHHHHTHH
T ss_pred             CCCCeECCcCCchhCCHHHHHHHHHh
Confidence            35569999999999999999999865

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=86.44  E-value=1.7  Score=34.08  Aligned_cols=55  Identities=22%  Similarity=0.292  Sum_probs=41.3

Q ss_pred             HHHHHH-hhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          50 EVENLC-KRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        50 ele~~c-k~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      +|.+.| ++++-...+.+..... .+---.|+|.|....++..|+..||+..+.+-.
T Consensus        42 dl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~   97 (104)
T 1jmt_A           42 EVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP   97 (104)
T ss_dssp             HHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred             HHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence            445566 9999999999964332 223357999999999999999999987776633

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.37  E-value=0.34  Score=37.06  Aligned_cols=29  Identities=14%  Similarity=0.146  Sum_probs=25.3

Q ss_pred             cCCeecCCCCccccc-ChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFK-GPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk-~~eFV~KHI~nKH~  330 (339)
                      .+..|.|+.|+|.|. ...-+..|++.-|.
T Consensus        21 ~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~   50 (98)
T 2gqj_A           21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQK   50 (98)
T ss_dssp             TTSCCCCTTTCCCCSSCSHHHHHHHHHHHH
T ss_pred             cCCCcCCCCCCCChhhhHHHHHHHHHHHcC
Confidence            467899999999999 99999999977554

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=86.36  E-value=0.3  Score=34.52  Aligned_cols=28  Identities=14%  Similarity=0.010  Sum_probs=24.4

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|+..-+
T Consensus         6 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~   33 (70)
T 1x5w_A            6 SGHPEKCSECSYSCSSKAALRIHERIHC   33 (70)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcC
Confidence            4567999999999999999999998733

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=86.19  E-value=2.8  Score=33.85  Aligned_cols=55  Identities=7%  Similarity=0.205  Sum_probs=45.5

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCee--EEEecCCCCCCCceEEEEEEecCcccHHHHHHhhc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFL--RVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLN   97 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~--~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~   97 (339)
                      -+++.++| +.||...+.+|+.+++.++||.  |+-  |        =.+||.|.....+.+++..+.
T Consensus        14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid--D--------TsAlvvf~~~~~a~~al~~i~   70 (100)
T 1whv_A           14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID--D--------TSAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE--T--------TEEEEECSCHHHHHHHHHHHH
T ss_pred             CCCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc--C--------CeEEEEecCHHHHHHHHHhcc
Confidence            45678888 9999999999999999999864  443  2        389999999998888877663

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=86.13  E-value=1  Score=36.55  Aligned_cols=59  Identities=10%  Similarity=0.161  Sum_probs=46.9

Q ss_pred             ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhc
Q psy4687          30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLN   97 (339)
Q Consensus        30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~   97 (339)
                      ++-+.+.++| +.||...+.+|+.+++.++||.===+.|        =.+||.|.....+++++..+.
T Consensus         2 ~~~R~HV~~l-~FP~ewKt~Di~~lFs~fggv~I~WidD--------TsAlvvf~~~~~a~~al~~i~   60 (101)
T 3ctr_A            2 PLGSDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD--------TSAFVSLSQPEQVKIAVNTSK   60 (101)
T ss_dssp             CSEEEEEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEET--------TEEEEEEEEECHHHHHHHHHT
T ss_pred             CCCCCeEEEE-eCChhhhhHHHHHHHhccCCEEEEEEcC--------CeEEEEecCHHHHHHHHHhcc
Confidence            4567788999 9999999999999999998754222222        289999999998888877663

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=85.86  E-value=0.32  Score=34.70  Aligned_cols=28  Identities=18%  Similarity=0.306  Sum_probs=24.4

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .+..|.|+.|+|.|....-+..|++.-+
T Consensus        11 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~   38 (72)
T 1x6e_A           11 GEKPYGCVECGKAFSRSSILVQHQRVHT   38 (72)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CCCCccCCCCCCccCCHHHHHHHHHhcC
Confidence            4567999999999999999999998644

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=85.77  E-value=0.28  Score=37.69  Aligned_cols=30  Identities=30%  Similarity=0.546  Sum_probs=25.8

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      ....|.|+.|+|.|....-+..|++.-|.+
T Consensus        25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~   54 (85)
T 2lv2_A           25 SAECHLCPVCGESFASKGAQERHLRLLHAA   54 (85)
T ss_dssp             CCTTEECTTSCCEESSHHHHHHHHHTTSCS
T ss_pred             CCCCEECCCCCCCcCcHHHHhhhhhhccCC
Confidence            355699999999999999999999876654

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.67  E-value=1.9  Score=34.22  Aligned_cols=65  Identities=14%  Similarity=0.259  Sum_probs=43.5

Q ss_pred             CCeEEeeecCC----CC-C---HHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          34 TSSIFLRNLAP----TI-T---KAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        34 t~slfIk~IpP----~i-s---r~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      ..++++...|.    +. -   +.+|...+..++-..-+-+-.   .+     |||+|..+.++.+|.. ||+.++.+-.
T Consensus         7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~-----~fVtF~d~~sAlaAi~-mnG~~v~Gr~   77 (91)
T 2dnr_A            7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DK-----MWVTFLEGSSALNVLS-LNGKELLNRT   77 (91)
T ss_dssp             SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SS-----EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred             CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CC-----EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence            34666666652    22 2   577888888888654444432   21     9999999887777766 8888877755


Q ss_pred             cc
Q psy4687         106 LG  107 (339)
Q Consensus       106 l~  107 (339)
                      |.
T Consensus        78 Lk   79 (91)
T 2dnr_A           78 IT   79 (91)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=85.29  E-value=0.51  Score=34.87  Aligned_cols=40  Identities=23%  Similarity=0.406  Sum_probs=30.3

Q ss_pred             HHHHHHHhhhhhccCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         289 EVEKFIAANTQEISTDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       289 evek~v~~~~~e~~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .+...+..+.   .+..|.|+.|+|.|....-+..|+...|+.
T Consensus        18 ~L~~H~~~H~---~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~   57 (88)
T 1llm_C           18 HLTTHIRTHT---GEKPFACDICGRKFARSDERKRHRDIQHIL   57 (88)
T ss_dssp             HHHHHHHHHH---CCCCEECTTTCCEESSHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHcC---CCCCccCCCCCCccCCHHHHHHHHHHhCCC
Confidence            3444444332   355799999999999999999999998863

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=85.15  E-value=0.42  Score=35.23  Aligned_cols=29  Identities=24%  Similarity=0.397  Sum_probs=24.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+-.|.|..|+|.|.-...+.+|++.-+.
T Consensus        10 ~ekpy~C~~CgK~F~~~s~L~~H~r~Htg   38 (66)
T 2epp_A           10 EAGILPCGLCGKVFTDANRLRQHEAQHGV   38 (66)
T ss_dssp             CCCCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             CccCcCCCCCCCccCCHHHHHhhhhhhCC
Confidence            45679999999999999999999987443

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=84.92  E-value=0.36  Score=29.85  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=21.9

Q ss_pred             CCeecCC--CCcccccChhhHHhhhhh
Q psy4687         303 TDKWLCP--LSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       303 e~K~rC~--~C~KlFk~~eFV~KHI~n  327 (339)
                      +-.|.|.  .|+|.|.....+..|+..
T Consensus         6 ~k~~~C~~~~C~k~f~~~~~L~~H~~~   32 (37)
T 1va1_A            6 KKQHICHIQGCGKVYGKTSHLRAHLRW   32 (37)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            4569998  599999999999999875

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.87  E-value=2.5  Score=33.75  Aligned_cols=65  Identities=14%  Similarity=0.224  Sum_probs=45.1

Q ss_pred             CCeEEeeecCCC-----C-C---HHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          34 TSSIFLRNLAPT-----I-T---KAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        34 t~slfIk~IpP~-----i-s---r~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      ..++++..++++     . -   +.+|.+.+..++-..-+-+-.-        .|||+|..+..+.+|+. ||+.++.+-
T Consensus        15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~v~Gr   85 (95)
T 1ufw_A           15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMKVKGR   85 (95)
T ss_dssp             TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred             CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCeeeCCe
Confidence            457778777643     1 1   4678888888885544443211        19999999988888876 999888775


Q ss_pred             ccc
Q psy4687         105 ELG  107 (339)
Q Consensus       105 el~  107 (339)
                      .+.
T Consensus        86 ~L~   88 (95)
T 1ufw_A           86 AVK   88 (95)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.78  E-value=0.47  Score=34.37  Aligned_cols=30  Identities=17%  Similarity=0.399  Sum_probs=26.3

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .+..|.|+.|+|.|....-+..|+...|.+
T Consensus        12 ~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~   41 (86)
T 1x6h_A           12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDP   41 (86)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCcCCCCCCccCCHHHHHHHHHHhcCC
Confidence            355699999999999999999999887764

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.76  E-value=0.48  Score=34.10  Aligned_cols=29  Identities=10%  Similarity=0.170  Sum_probs=24.8

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .+..|.|..|+|.|....-+..|+..-+.
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~   32 (78)
T 2d9h_A            4 GSSGLQCEICGFTCRQKASLNWHQRKHAE   32 (78)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHHHHhhc
Confidence            35679999999999999999999876543

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=83.48  E-value=0.67  Score=35.78  Aligned_cols=30  Identities=20%  Similarity=0.422  Sum_probs=25.8

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .+..|.|+.|+|.|....-+..|+..-+++
T Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   92 (124)
T 2dlq_A           63 SEQVFTCSVCQETFRRRMELRLHMVSHTGE   92 (124)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCC
Confidence            567899999999999999999999875543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=83.33  E-value=0.57  Score=33.48  Aligned_cols=26  Identities=19%  Similarity=0.339  Sum_probs=21.9

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhc
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      +..|.|+.|+|.|....-+..|++.-
T Consensus        55 ~~~~~C~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A           55 EKPHKCQVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             CCCEECTTTSCEESSHHHHHHHHHHH
T ss_pred             CCCCcCCCcchhhCChHHHHHHHHhh
Confidence            45699999999999999999998753

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=83.10  E-value=0.54  Score=28.87  Aligned_cols=26  Identities=23%  Similarity=0.551  Sum_probs=22.3

Q ss_pred             CCeecCC--CCcccccChhhHHhhhhhc
Q psy4687         303 TDKWLCP--LSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       303 e~K~rC~--~C~KlFk~~eFV~KHI~nK  328 (339)
                      +-.|.|.  .|+|.|....-+..|+..-
T Consensus         4 ~k~~~C~~~~C~k~f~~~~~L~~H~~~H   31 (38)
T 1bhi_A            4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CcceECCCCCCCcccCCHHHHHHHHHHh
Confidence            4569998  6999999999999998753

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=83.00  E-value=0.52  Score=34.94  Aligned_cols=30  Identities=13%  Similarity=0.201  Sum_probs=24.1

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .+..|.|+.|+|.|....-+..|+...+.+
T Consensus        33 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   62 (96)
T 2dmd_A           33 GVKPYKCKTCDYAAADSSSLNKHLRIHSDE   62 (96)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHSCCC
T ss_pred             CCCCEeCCCCCCccCCHHHHHHHHHHhCCC
Confidence            356799999999999999999998765543

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=82.50  E-value=0.7  Score=33.64  Aligned_cols=26  Identities=15%  Similarity=0.381  Sum_probs=22.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+..|.|+.|+|.|....-+.+|++.
T Consensus        62 ~~~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           62 GHRPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCCCccCCCCCcccCCHHHHHHHHHh
Confidence            35579999999999999999999864

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=82.06  E-value=0.53  Score=33.83  Aligned_cols=29  Identities=21%  Similarity=0.336  Sum_probs=25.0

Q ss_pred             ccCCeecCCCCcccccChhhHHhhhhhcc
Q psy4687         301 ISTDKWLCPLSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       301 ~~e~K~rC~~C~KlFk~~eFV~KHI~nKH  329 (339)
                      ..+..|.|+.|+|.|....-+..|+..-+
T Consensus        14 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~   42 (77)
T 2cot_A           14 RERRRYKCDECGKSFSHSSDLSKHRRTHT   42 (77)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHHHcC
Confidence            35678999999999999999999997644

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=81.84  E-value=0.6  Score=30.31  Aligned_cols=24  Identities=21%  Similarity=0.562  Sum_probs=21.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHI  325 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI  325 (339)
                      .+-.|.|+.|+|-|.-..-+.+|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            356799999999999999999997

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=81.71  E-value=0.73  Score=34.29  Aligned_cols=26  Identities=15%  Similarity=0.445  Sum_probs=22.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+..|.|+.|+|.|....-+.+|++.
T Consensus        72 ~~~~~~C~~C~~~f~~~~~l~~H~~~   97 (100)
T 2ebt_A           72 GAKPFQCGVCNRSFSRSDHLALHMKR   97 (100)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             CCCCeECCCCcCccCCHHHHHHHHHH
Confidence            34569999999999999999999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=81.57  E-value=0.36  Score=37.00  Aligned_cols=30  Identities=23%  Similarity=0.284  Sum_probs=26.1

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .+..|.|..|+|.|....-+..|++..|..
T Consensus        66 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   95 (107)
T 1wjp_A           66 EYKKLTCLECMRTFKSSFSIWRHQVEVHNQ   95 (107)
T ss_dssp             STGGGEEGGGTEECSSHHHHHHHHHHTSCC
T ss_pred             CCCCccCccccchhCCHHHHHHHHHHHcCC
Confidence            455699999999999999999999877753

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=81.01  E-value=0.6  Score=33.35  Aligned_cols=30  Identities=30%  Similarity=0.580  Sum_probs=25.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .+..|.|+.|+|.|....-+..|+...+++
T Consensus        26 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (82)
T 2kmk_A           26 DTRPYPCQYCGKRFHQKSDMKKHTFIHTGE   55 (82)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHHHHHTC
T ss_pred             CCCCeeCCcCChhhCCHHHHHHHHHHhcCC
Confidence            456799999999999999999999865543

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=81.01  E-value=0.59  Score=30.70  Aligned_cols=27  Identities=30%  Similarity=0.354  Sum_probs=23.1

Q ss_pred             cCCeecCC--CCcccccChhhHHhhhhhc
Q psy4687         302 STDKWLCP--LSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       302 ~e~K~rC~--~C~KlFk~~eFV~KHI~nK  328 (339)
                      .+-.|.|.  .|+|.|....-+..|++.-
T Consensus        15 ~~k~~~C~~~~C~k~F~~~~~L~~H~~~H   43 (47)
T 1ncs_A           15 PDKTFECLFPGCTKTFKRRYNIRSHIQTH   43 (47)
T ss_dssp             TTTEEECCCTTCCCEECSSSSHHHHHHHH
T ss_pred             CCCCeECCCCCCCCccCCHHHHHHHHHHc
Confidence            45679995  7999999999999998763

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=80.61  E-value=0.59  Score=35.41  Aligned_cols=29  Identities=17%  Similarity=0.208  Sum_probs=24.4

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      +..|.|+.|+|.|....-+..|++.-+++
T Consensus        71 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   99 (106)
T 2ee8_A           71 EKPFKCQECGKGFCQSRTLAVHKTLHMQT   99 (106)
T ss_dssp             CCTTSCSSSCCCCSSHHHHHHHHHHTTSC
T ss_pred             CCCeECCCcCCcccCHHHHHHHHHHhCCC
Confidence            44599999999999999999999766554

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.58  E-value=0.75  Score=34.06  Aligned_cols=26  Identities=12%  Similarity=0.088  Sum_probs=16.5

Q ss_pred             eecCCCCcccccChhhHHhhhhhcch
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      ++.|+.|+|.|....-+..|+...|.
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~   50 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHV   50 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTT
T ss_pred             CCcccccccccCCHHHHHHHHHHhcc
Confidence            44566666666666666666665454

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.49  E-value=0.9  Score=29.59  Aligned_cols=26  Identities=15%  Similarity=0.082  Sum_probs=22.1

Q ss_pred             cCCeecCCC--CcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPL--SGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~--C~KlFk~~eFV~KHI~n  327 (339)
                      .+-.|.|+.  |+|.|....-+..|++.
T Consensus         6 gekp~~C~~~~C~k~F~~~~~L~~H~r~   33 (38)
T 2eln_A            6 SGILLKCPTDGCDYSTPDKYKLQAHLKV   33 (38)
T ss_dssp             CCCCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            345699975  99999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	339
d1h2vz_	93	d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding pro	3e-05
d2cqga1	90	d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TD	1e-04
d1cvja1	80	d.58.7.1 (A:11-90) Poly(A)-binding protein {Human	1e-04
d2u2fa_	85	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	2e-04
d2cqca1	83	d.58.7.1 (A:109-191) Arginine/serine-rich splicing	2e-04
d1no8a_	78	d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu	2e-04
d1fxla2	85	d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Ho	4e-04
d1whwa_	99	d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm	5e-04
d1b7fa1	82	d.58.7.1 (A:123-204) Sex-lethal protein {Drosophil	6e-04
d1b7fa2	85	d.58.7.1 (A:205-289) Sex-lethal protein {Drosophil	6e-04
d1fxla1	82	d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Hom	6e-04
d2cpha1	94	d.58.7.1 (A:454-547) Probable RNA-binding protein	6e-04
d2cqba1	89	d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomer	7e-04
d2cq0a1	90	d.58.7.1 (A:231-320) Eukaryotic translation initia	0.001
d2cpfa1	85	d.58.7.1 (A:362-446) Probable RNA-binding protein	0.002
d2ghpa1	81	d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splici	0.002
d2cpja1	86	d.58.7.1 (A:65-150) Non-POU domain-containing octa	0.003
d1wf2a_	98	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	0.003
d2cpza1	102	d.58.7.1 (A:383-484) CUG triplet repeat RNA-bindin	0.003
d2f9da1	114	d.58.7.1 (A:12-125) Pre-mRNA branch site protein p	0.003
d2ghpa2	75	d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicin	0.004
d1x5ua1	93	d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Hu	0.004

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 3e-05
 Identities = 11/78 (14%), Positives = 33/78 (42%)

Query: 29  RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVD 88
           + L ++ ++++ NL+   T+ ++  L  +     ++ +   +  +      +V +    D
Sbjct: 2   KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRAD 61

Query: 89  IKEICWNLNNIRLRDCEL 106
            +     +N  RL D  +
Sbjct: 62  AENAMRYINGTRLDDRII 79

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 14/77 (18%), Positives = 29/77 (37%)

Query: 29  RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVD 88
           RA+ +TS + +  L    T+ +++     +   L V +            G+V F     
Sbjct: 3   RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYET 62

Query: 89  IKEICWNLNNIRLRDCE 105
             ++    + I  R C+
Sbjct: 63  QVKVMSQRHMIDGRWCD 79

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 12/71 (16%), Positives = 29/71 (40%)

Query: 36  SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWN 95
           S+++ +L P +T+A +          L + +      RR     +V F++  D +     
Sbjct: 2   SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61

Query: 96  LNNIRLRDCEL 106
           +N   ++   +
Sbjct: 62  MNFDVIKGKPV 72

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 9/70 (12%), Positives = 22/70 (31%)

Query: 37  IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
           +F+  L   +   +V+ L   +       +             +  +       +    L
Sbjct: 4   LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63

Query: 97  NNIRLRDCEL 106
           N ++L D +L
Sbjct: 64  NGMQLGDKKL 73

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 22  SKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWV 81
           ++  P P        + +  L+   T+ ++  +  +Y     V+I   Q  RR     +V
Sbjct: 2   NRANPDP-----NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFV 56

Query: 82  TFRRDVDIKEICWNLNNIRLRDCEL 106
            F    D KE     N + L    +
Sbjct: 57  YFENVDDAKEAKERANGMELDGRRI 81

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 37  IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
           + + NL   ++ A+++ L   +    + A+       R      V F R  D  +     
Sbjct: 3   LLVSNLDFGVSDADIQELFAEFGTLKKAAVH-YDRSGRSLGTADVHFERKADALKAMKQY 61

Query: 97  NNIRLRDCEL 106
           N + L    +
Sbjct: 62  NGVPLDGRPM 71

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 16/79 (20%), Positives = 33/79 (41%)

Query: 33  RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEI 92
           R +++++  L  T+T+ E+E L  +Y   +   I   Q        G++ F + ++ +E 
Sbjct: 5   RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64

Query: 93  CWNLNNIRLRDCELGAIVN 111
              LN  +         V 
Sbjct: 65  IKGLNGQKPSGATEPITVK 83

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (84), Expect = 5e-04
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 34  TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEIC 93
           +  +F+RNL+ T ++ ++E L   Y     +        ++     +VTF       +  
Sbjct: 8   SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67

Query: 94  WNLNNIRLRDCELGAIVNRDLSRRVRTVSG 123
             ++    +   L   V     ++  + SG
Sbjct: 68  AEVDGQVFQGRML--HVLPSTIKKEASQSG 95

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 13/72 (18%), Positives = 27/72 (37%)

Query: 35  SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICW 94
           +++ +  L   +T  E+  L +         I         +   +V F  ++D +    
Sbjct: 3   TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62

Query: 95  NLNNIRLRDCEL 106
            LN I +R+  L
Sbjct: 63  VLNGITVRNKRL 74

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 13/73 (17%), Positives = 33/73 (45%)

Query: 33  RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEI 92
           + +++++ NL  TIT  +++ +  +Y   ++  I   +   R     +V + +  + +E 
Sbjct: 5   KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64

Query: 93  CWNLNNIRLRDCE 105
              LNN+      
Sbjct: 65  ISALNNVIPEGGS 77

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 6e-04
 Identities = 11/72 (15%), Positives = 28/72 (38%)

Query: 35  SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICW 94
           +++ +  L   +T+ E  +L           +   +   +    G+V +    D ++   
Sbjct: 3   TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62

Query: 95  NLNNIRLRDCEL 106
            LN +RL+   +
Sbjct: 63  TLNGLRLQTKTI 74

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKE 91
           TS I +RN+     + E+  L   +     V +             G+V F    D K+
Sbjct: 7  TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 66

Query: 92 ICWNLNN 98
              L +
Sbjct: 67 AFNALCH 73

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 7e-04
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 36  SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWN 95
            +++  LA  +    +      +     + I       +     +V F    D      N
Sbjct: 7   VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66

Query: 96  LNNIRLRDCELGAIVNRDLSRRVR 119
           +N   L    +   VN     R++
Sbjct: 67  MNESELFGRTI--RVNLAKPMRIK 88

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 12/80 (15%), Positives = 31/80 (38%)

Query: 27  PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRD 86
           P R     ++I + NL+    + +++ L + +    R+ +A  +   +     +++F R 
Sbjct: 1   PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 60

Query: 87  VDIKEICWNLNNIRLRDCEL 106
            D       ++        L
Sbjct: 61  EDAARAIAGVSGFGYDHLIL 80

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 8/73 (10%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 37  IFLRNLAPTITKAEVENLCKRYSGFLR---VAIADPQPDRRWFRRGWVTFRRDVDIKEIC 93
           +F++NL  + T+  ++ +  +             +          G+V +++    ++  
Sbjct: 1   LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60

Query: 94  WNLNNIRLRDCEL 106
             L    +   +L
Sbjct: 61  KQLQGHTVDGHKL 73

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 9/70 (12%), Positives = 24/70 (34%)

Query: 37  IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL 96
           +++ N  P+ T+  + +L +  +                 R  ++      D +     L
Sbjct: 4   LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63

Query: 97  NNIRLRDCEL 106
           N +++    L
Sbjct: 64  NGLKIEGYTL 73

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 35  SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICW 94
           S +F+ NL P IT+ E+  L ++Y     V         +    G++        +    
Sbjct: 9   SRLFVGNLPPDITEEEMRKLFEKYGKAGEV------FIHKDKGFGFIRLETRTLAEIAKV 62

Query: 95  NLNNIRLRDCEL 106
            L+N+ LR  +L
Sbjct: 63  ELDNMPLRGKQL 74

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 22  SKNEPPPRALHRTSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGW 80
           S  +  PR+++    +F+ NL    + K++VE +  +Y   +                 +
Sbjct: 5   SSGKTDPRSMNSR--VFIGNLNTLVVKKSDVEAIFSKYGKIVGC--------SVHKGFAF 54

Query: 81  VTFRRDVDIKEICWNLNNIRLRDCEL 106
           V +  + + +      +   +    L
Sbjct: 55  VQYVNERNARAAVAGEDGRMIAGQVL 80

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 11/95 (11%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 12  SYNNIINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQP 71
           +  +I   G  K  P        +++F+ +L       ++  +   +   +   +   + 
Sbjct: 2   TQQSIGAAGSQKEGPE------GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ 55

Query: 72  DRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL 106
                  G+V++   V  +    ++N  ++    L
Sbjct: 56  TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 90

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 27  PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRD 86
           PP        +++RNL   IT  E+ ++  +Y G +R       P+ R     +V +   
Sbjct: 3   PPEV---NRILYIRNLPYKITAEEMYDIFGKY-GPIRQIRVGNTPETRGT--AYVVYEDI 56

Query: 87  VDIKEICWNLNNIRLRDCEL 106
            D K  C +L+   + +  L
Sbjct: 57  FDAKNACDHLSGFNVCNRYL 76

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.7 bits (76), Expect = 0.004
 Identities = 9/61 (14%), Positives = 20/61 (32%)

Query: 35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICW 94
          +++ ++NL  +  + +V    K     + V +AD       F R                
Sbjct: 1  TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKT 60

Query: 95 N 95
          +
Sbjct: 61 H 61

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.004
 Identities = 9/80 (11%), Positives = 31/80 (38%)

Query: 27  PPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRD 86
           P    ++ +++++  L   +++  +  L  +    +   +   +   +    G+V F  +
Sbjct: 2   PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 61

Query: 87  VDIKEICWNLNNIRLRDCEL 106
            D       ++ I+L    +
Sbjct: 62  EDADYAIKIMDMIKLYGKPI 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	339
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.48
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.46
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	98.44
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.33
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	98.3
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.25
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.24
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	98.23
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.23
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	98.18
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	98.18
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	98.17
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	98.17
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.15
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.15
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.14
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.14
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	98.13
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.12
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	98.1
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	98.09
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	98.09
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	98.09
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	98.08
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.08
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	98.07
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	98.07
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.07
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	98.06
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	98.03
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	98.03
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.02
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	98.02
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	98.01
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	97.99
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.99
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	97.99
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	97.96
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	97.96
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	97.95
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	97.9
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	97.9
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	97.89
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	97.89
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	97.86
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	97.86
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	97.86
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	97.83
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	97.81
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	97.76
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	97.74
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	97.74
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	97.7
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	97.69
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	97.68
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	97.67
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.67
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	97.62
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	97.61
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	97.6
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	97.6
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	97.57
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	97.56
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	97.55
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	97.51
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	97.5
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	97.49
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	97.44
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	97.39
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	97.35
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.32
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	97.31
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	97.27
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	97.23
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	97.16
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.11
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	97.08
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	97.05
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	96.96
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	96.83
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	96.58
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	95.88
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	95.52
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	95.42
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	95.35
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	95.22
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	94.07
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	93.75
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	93.56
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	93.36
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	92.57
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	92.36
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	92.35
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	91.59
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	91.55
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	91.33
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.71
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	90.16
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	89.88
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	89.24
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	88.25
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	87.63
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	87.01
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	86.1
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	84.78
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	84.19
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	83.76
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	83.12
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	82.54
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	81.16

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2e-07  Score=69.45  Aligned_cols=72  Identities=17%  Similarity=0.272  Sum_probs=60.8

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ++|||++||++++-++|.+++++++....+-+- |+.. .+.-..|||.|....++..|+..||+..+.+-.+.
T Consensus         3 t~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~   75 (82)
T d1fxla1           3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKIT-GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK   75 (82)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT-CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCCcccccceeeccC-CCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            469999999999999999999999998888774 4433 34556799999999999999999999988886554

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=1.3e-07  Score=70.52  Aligned_cols=79  Identities=13%  Similarity=0.169  Sum_probs=59.8

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccccccccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRD  113 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~~v~r~  113 (339)
                      ++|||++||++++.++|.+++++++....+.+--.....+.-..|||.|....++..|+..||+..++|-.+.....+|
T Consensus         2 ~tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~P   80 (81)
T d2ghpa1           2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP   80 (81)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             cEEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence            6899999999999999999999998876655432222223345799999999999999999999999887765444443

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.44  E-value=1.6e-07  Score=70.06  Aligned_cols=74  Identities=18%  Similarity=0.238  Sum_probs=60.8

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .++|||++||++++.++|.+++++++....+.|.-.....+....|+|.|....++..|+..||+..+.+-.+.
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~   75 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLK   75 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            56799999999999999999999999999988753222223334699999999999999999999988876554

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=5.4e-07  Score=70.51  Aligned_cols=68  Identities=18%  Similarity=0.270  Sum_probs=59.5

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .++|||++||++++.++|.++|++++-..++.|.   +.|.   .|+|.|....++..|+..||+..+.+-.|.
T Consensus        10 ~~~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l~---~~kg---~afV~f~~~~~A~~A~~~lng~~~~gr~l~   77 (111)
T d1whxa_          10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP---EGGI---TAIVEFLEPLEARKAFRHLAYSKFHHVPLY   77 (111)
T ss_dssp             EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---SSSS---CEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred             CCEEEEECCCCCCCHHHHHhhhhccCCccEEEee---ccCc---eEEEEEcCHHHHHHHHHHHcCCccCCCeEE
Confidence            4689999999999999999999999999999984   3344   599999999999999999999988875553

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=8.1e-07  Score=69.18  Aligned_cols=80  Identities=13%  Similarity=0.195  Sum_probs=65.6

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccccccccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAIVNRD  113 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~~v~r~  113 (339)
                      .+.|||.+||++++.++|.+++++++-...+.+... ...+..+.|+|+|....++..|+..|||..|++-.+.....+|
T Consensus        18 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~-~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~~P   96 (101)
T d1x5oa1          18 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP   96 (101)
T ss_dssp             TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhcccccceeeecc-cccccccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCCCC
Confidence            367999999999999999999999998887777644 3446677999999999999999999999998875555444444


Q ss_pred             c
Q psy4687         114 L  114 (339)
Q Consensus       114 ~  114 (339)
                      +
T Consensus        97 l   97 (101)
T d1x5oa1          97 L   97 (101)
T ss_dssp             B
T ss_pred             c
Confidence            4

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.8e-06  Score=65.18  Aligned_cols=70  Identities=16%  Similarity=0.365  Sum_probs=61.3

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.|||.+||++++.++|.+++++++....+.+......|.   .|+|.|....++..|+..||+..+.+..|.
T Consensus        15 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g---~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~   84 (95)
T d1x4aa1          15 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP---FAFVEFEDPRDAEDAVYGRDGYDYDGYRLR   84 (95)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSC---CEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred             CEEEEECCCCCCCHHHHHHHHhcCCceEEEEecccccccc---eEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            4699999999999999999999999999988876655554   499999999999999999999988886654

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2e-06  Score=64.83  Aligned_cols=72  Identities=21%  Similarity=0.377  Sum_probs=59.9

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      +++.|||.+||++++.++|.+++++++-...+-|- ||... +--..|+|+|....++..|+..||+..+.+..
T Consensus         5 k~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~g-~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~   77 (85)
T d1fxla2           5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG-VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT   77 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCccccccccccccc-cCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCC
Confidence            46789999999999999999999999998887773 55433 33348999999999999999999998877643

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=1.8e-06  Score=67.18  Aligned_cols=74  Identities=14%  Similarity=0.240  Sum_probs=62.6

Q ss_pred             CcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          28 PRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        28 ~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      |..-.....|||.+||++++.++|.+++++++...++.+.    .+   ..|||+|....++..|+..||+..+.+..+.
T Consensus         9 p~~~~~~~~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~----~~---g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~   81 (98)
T d1wg4a_           9 PPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQ----KD---GMGMVEYLRKEDMEYALRKLDDTKFRSHEGE   81 (98)
T ss_dssp             CCCCSCSCEEEEECCCSSCCHHHHHHHHTTSSCEEEEEEE----TT---TEEEEEESSHHHHHHHHHHHSSEEEECTTSC
T ss_pred             CCCCCCCCEEEEECCCCCCCHHHHHHHHHhhccccccccc----cc---ceEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence            3343456679999999999999999999999998888874    22   4799999999999999999999988887765


Q ss_pred             c
Q psy4687         108 A  108 (339)
Q Consensus       108 ~  108 (339)
                      .
T Consensus        82 v   82 (98)
T d1wg4a_          82 T   82 (98)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.6e-06  Score=65.96  Aligned_cols=70  Identities=13%  Similarity=0.204  Sum_probs=60.0

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+|||.+||++++.++|.+++++++....+.+ .|+...+.   .|+|.|....++..|+..+++..+.+..+.
T Consensus         9 ~tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~---~afV~f~~~~~A~~A~~~l~~~~~~g~~i~   79 (90)
T d2cqia1           9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP---YCFVEFYEHRDAAAALAAMNGRKILGKEVK   79 (90)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCC---EEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHhcCCceeeeeecccCccce---eeEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            36999999999999999999999998888876 55555554   599999999999999999999888876554

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.9e-06  Score=65.04  Aligned_cols=76  Identities=16%  Similarity=0.255  Sum_probs=62.7

Q ss_pred             ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      .+-.+++|||.+||++++.++|.+++++++....+.+ .|+... +.-..|+|.|....++..|+..||+..+.+-.+
T Consensus         3 ~~~~s~tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i   79 (93)
T d1h2vz_           3 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKK-TACGFCFVEYYSRADAENAMRYINGTRLDDRII   79 (93)
T ss_dssp             TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred             ccCCCCEEEEeCCCCCCCHHHHHHHHHHHCCcceeccccccccc-cccceEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            3457789999999999999999999999999999987 444432 333489999999999999999999988876443

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.1e-06  Score=65.23  Aligned_cols=74  Identities=12%  Similarity=0.235  Sum_probs=59.6

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .++.|||++||++++.++|.+++++++....+-+- |+... +.-..|+|.|....++..|+..||+..+.+-.+.
T Consensus        17 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~g-~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~   91 (102)
T d2cpza1          17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-LSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK   91 (102)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSC-SEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhccccccceeeecccC-CCccceEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence            35679999999999999999999999988777653 33332 3334899999999999999999999888775543

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.3e-06  Score=66.55  Aligned_cols=74  Identities=15%  Similarity=0.275  Sum_probs=62.0

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceE-EEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFR-RGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R-~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      .+++|||++||++++.++|.++|++++....+.|. |+..  +-.| .|||.|....++..|+..||+..+.+..+..
T Consensus         7 ~~~~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~t--~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v   82 (90)
T d2cq0a1           7 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTT--GQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV   82 (90)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSS--CSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhcccccccccccccc--cccccceeEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            45789999999999999999999999999998876 3332  2234 7999999999999999999999888876653

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.17  E-value=3e-06  Score=64.23  Aligned_cols=75  Identities=9%  Similarity=0.082  Sum_probs=61.2

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+..|||++||++++.++|.+++++++....+-+ .|+... +.-..|||.|....++..|+..||+..+.+-.+.
T Consensus         5 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d~~tg-~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~   80 (88)
T d1rk8a_           5 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTG-FSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ   80 (88)
T ss_dssp             C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTS-SEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccccccccccccc-ccccceeEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            45678999999999999999999999999888876 455543 2223699999999999999999999888875553

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=2e-06  Score=64.44  Aligned_cols=71  Identities=13%  Similarity=0.259  Sum_probs=57.8

Q ss_pred             EEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCc--eEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRW--FRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        37 lfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf--~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      |||++||++++.++|.+++++++....+.|- |+......  -..|||+|....++..|+..+|+..+.+-.+.
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~   74 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE   74 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            7999999999999999999999998888774 33332211  12599999999999999999999988886654

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=4.7e-06  Score=63.81  Aligned_cols=73  Identities=12%  Similarity=0.186  Sum_probs=60.7

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.+|||.+||++++-++|.+++++++....+.| .|+... +.-..|||.|....++..|+..||+..+.+..+.
T Consensus         9 ~~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d~~tg-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   82 (93)
T d1x5ua1           9 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTG-QHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR   82 (93)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSC-SBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHhCCccccceeeccccc-ccccceEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            468999999999999999999999999988887 455432 2223699999999999999999999999886654

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=3.7e-06  Score=64.87  Aligned_cols=73  Identities=18%  Similarity=0.220  Sum_probs=60.1

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+.|||.+||++++.++|.++|.+++....+-|- |+... +.--.|||.|....++..|+..||+..+.+-.+.
T Consensus         8 ~~~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d~~tg-~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~   81 (99)
T d1whwa_           8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTK-KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH   81 (99)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTC-CCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEE
T ss_pred             CCEEEEECCCCcCCHHHHHHHHHhcCCceeeeeccccccc-ccCcceEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            4569999999999999999999999998888873 44332 2222799999999999999999999888886654

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=3.8e-06  Score=64.46  Aligned_cols=74  Identities=22%  Similarity=0.266  Sum_probs=60.6

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhh-ccccccCccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNL-NNIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L-~~~~i~d~el  106 (339)
                      .++.|||++||++++.++|.+++++++....+.| .|+....+.-..|||.|....++..|+..| |+..+.|-.+
T Consensus         7 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l   82 (94)
T d2cpha1           7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL   82 (94)
T ss_dssp             CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEE
Confidence            4577999999999999999999999999888887 455444344458999999999999999888 6777776444

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=5.1e-06  Score=63.51  Aligned_cols=71  Identities=14%  Similarity=0.286  Sum_probs=59.8

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ...|||++||++++.++|.+++.+++....+-+ .|+...|.   .|||.|....++..|+..+|+..+.|..+.
T Consensus        11 ~~~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~kg---~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~   82 (93)
T d2cq3a1          11 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG---FGFVTFENSADADRAREKLHGTVVEGRKIE   82 (93)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCC---EEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcceeeeccccccccCCcc---eeEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            345999999999999999999999999888765 45555444   599999999999999999999988886554

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.9e-06  Score=65.38  Aligned_cols=70  Identities=19%  Similarity=0.349  Sum_probs=58.4

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..|||.+||++++-++|.+++++++....+-|. |....|.   .|+|.|....++..|+..||+..+.+-.+.
T Consensus         9 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~kg---~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~   79 (89)
T d1cvja2           9 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG---YGFVHFETQEAAERAIEKMNGMLLNDRKVF   79 (89)
T ss_dssp             TEEEEESCCSSCCHHHHHHHHHTTSCEEEEEECCBTTBCCS---CEEEEESCHHHHHHHTTSSSEEEETTEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEeecCCCcc---eeEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            469999999999999999999999998887763 3433333   599999999999999988999888775554

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.1e-06  Score=65.19  Aligned_cols=74  Identities=14%  Similarity=0.190  Sum_probs=60.6

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+.+|||.+||++++.++|.+++++++-...+-+. |+... +.--.|||.|....++..|+..||+..+.|..+.
T Consensus         4 ~~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~-~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~   78 (89)
T d2cqba1           4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-KHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR   78 (89)
T ss_dssp             CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSC-CCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CCcEEEEeCCCCcCCHHHHHHHHhhCCeEEecccccccccc-cccceeEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            45689999999999999999999999988888774 44422 2122699999999999999999999988886654

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=6.6e-06  Score=61.98  Aligned_cols=66  Identities=15%  Similarity=0.272  Sum_probs=56.9

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLR  102 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~  102 (339)
                      .+.+|||.+||++++.++|.+++++++++..+.+-.+. .|+   .|.|.|....++.+|+..|++..+.
T Consensus         9 Ps~tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~~~-~~~---~afV~f~~~~~A~~A~~~l~~~~i~   74 (88)
T d2adca2           9 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRK---MALIQMGSVEEAVQALIDLHNHDLG   74 (88)
T ss_dssp             SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-STT---CEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHhhccCCEEEEEEeeec-ccc---eeEEEECCHHHHHHHHHhccCCEec
Confidence            36789999999999999999999999999887775443 344   5999999999999999999998874

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=5.8e-06  Score=63.01  Aligned_cols=69  Identities=9%  Similarity=0.096  Sum_probs=56.2

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIR  100 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~  100 (339)
                      -...+|||.+||++++.++|.++|.+++....+.+-......+.-..|||.|....++..++..+|+..
T Consensus         6 ~~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~   74 (98)
T d1x4ha1           6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEA   74 (98)
T ss_dssp             CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTT
T ss_pred             CCCCEEEEcCCCCcCCHHHHHHHHhccccceeeeeccccccccccceEEEEEcCHHHHHHHHHHccccc
Confidence            345689999999999999999999999988877775444343444589999999999999988887543

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.5e-06  Score=63.13  Aligned_cols=67  Identities=16%  Similarity=0.342  Sum_probs=55.9

Q ss_pred             EEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        37 lfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      |||.+||++++.++|.+++++++....+-+.-.....+....|+|+|....++..|+..||+..+.+
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~G   67 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA   67 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhccccccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECC
Confidence            7999999999999999999999998887665333333444589999999999999999999877765

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=4.7e-06  Score=61.70  Aligned_cols=71  Identities=17%  Similarity=0.283  Sum_probs=60.0

Q ss_pred             eEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        36 slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      -|||++||++++-++|.+++++++....+-|--.. ..+.-..|+|+|....++..|+..+|+..+.+-.+.
T Consensus         2 rl~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~   72 (78)
T d1no8a_           2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN   72 (78)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEEEEEESCSS-CCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEee-ccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            48999999999999999999999999999886332 334446899999999999999999999888775543

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.2e-06  Score=62.18  Aligned_cols=71  Identities=18%  Similarity=0.283  Sum_probs=59.4

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      .||||.+|||+++.++|.++|.+++.+..+-|- ||.. .+--..|+|.|....++..|+..||+..+.+..+
T Consensus         1 aslfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d~~t-g~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i   72 (80)
T d1cvja1           1 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT-RRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV   72 (80)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT-CCEEEEEEEEESSHHHHHHHHTTSTTCEETTEEC
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEecccc-cCCCCceEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence            379999999999999999999999998888874 3433 3444589999999999999998999988877443

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=5.6e-06  Score=63.75  Aligned_cols=67  Identities=10%  Similarity=0.243  Sum_probs=58.3

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      +++|||.+||++++.++|.++|.+++....+.+.   +.|+   .|+|.|....++..|+..||+..+.+...
T Consensus        17 s~tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~---~~~~---~afV~f~~~~~A~~A~~~l~~~~i~g~~~   83 (97)
T d1whya_          17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV---KGDS---FAYIQYESLDAAQAACAKMRGFPLGGPDR   83 (97)
T ss_dssp             CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC---SSSC---CEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHhhcccceEeee---cccc---EEEeccCCHHHHHHHHHHhCCCEeCCCce
Confidence            5789999999999999999999999999888874   3344   59999999999999999999988876543

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.4e-06  Score=62.70  Aligned_cols=79  Identities=15%  Similarity=0.177  Sum_probs=62.6

Q ss_pred             ccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccccc
Q psy4687          30 ALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGAI  109 (339)
Q Consensus        30 ~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~~  109 (339)
                      .+.++.+|||++||++++.++|.++|.+++....+.+.   ..|+   .|+|.|....++..|+..||+..+.+..+...
T Consensus         4 ~~~~~k~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~~---~~rg---~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~   77 (86)
T d2cpda1           4 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK---KIRD---YAFVHFSNREDAVEAMKALNGKVLDGSPIEVT   77 (86)
T ss_dssp             CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEE---ECSS---EEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred             cccCCCEEEEcCCCCCCCHHHHHHhhcccceeeeEEEc---cccE---EEEEEeCCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            34566789999999999999999999999766555553   2233   69999999999999999999999988776543


Q ss_pred             ccccc
Q psy4687         110 VNRDL  114 (339)
Q Consensus       110 v~r~~  114 (339)
                      ..+|.
T Consensus        78 ~akP~   82 (86)
T d2cpda1          78 LAKPV   82 (86)
T ss_dssp             CCCCC
T ss_pred             eccCC
Confidence            33443

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.4e-06  Score=63.12  Aligned_cols=66  Identities=17%  Similarity=0.253  Sum_probs=57.9

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.|||.+||++++.++|.+++++++...++.+-    .+   ..|+|.|....++..|+..||+..+.+..+.
T Consensus         1 nrvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~----~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~   66 (87)
T d3begb1           1 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY----RD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE   66 (87)
T ss_dssp             CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEEC----TT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred             CeEEEECCCCcCCHHHHHHHHhhhccccccccc----cc---ceeeEEeCCHHHHHHHHHHhCCCEECCcEeE
Confidence            369999999999999999999999999988773    11   4799999999999999999999998886654

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.06  E-value=6.6e-06  Score=61.67  Aligned_cols=71  Identities=20%  Similarity=0.345  Sum_probs=58.2

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      +.++|||.+||++++-++|.+++++++....+-|- |+.. .+---.|+|+|....++..|+..||+..+.+.
T Consensus         5 ~~t~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~d~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   76 (85)
T d1b7fa2           5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT-GRPRGVAFVRYNKREEAQEAISALNNVIPEGG   76 (85)
T ss_dssp             TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTT-CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCEeeeeeeccccc-ccCceeEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence            44579999999999999999999999988888764 4433 23333799999999999999999999877653

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=6.9e-06  Score=62.04  Aligned_cols=69  Identities=28%  Similarity=0.408  Sum_probs=59.8

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+.|||++||++++.++|.++|++++....+.+.   +.|+   .|+|.|....++..|+..||+..+.+..+.
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~---~~k~---~afV~f~~~~~A~~A~~~l~g~~i~g~~l~   75 (86)
T d2cpja1           7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH---KDKG---FGFIRLETRTLAEIAKVELDNMPLRGKQLR   75 (86)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE---TTTT---EEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhCCceEeeee---cccc---eEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            34579999999999999999999999999888885   2344   699999999999999999999998886654

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=5.3e-06  Score=60.28  Aligned_cols=69  Identities=16%  Similarity=0.282  Sum_probs=54.7

Q ss_pred             EEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        37 lfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      |||.+||++++.++|.++|++++....+.+-=+....+....|||+|....++..|+. +|+..+.|-.+
T Consensus         2 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~-~~~~~l~gr~i   70 (75)
T d2msta_           2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMV   70 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHH-CSSCCBTTBCC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeeccccccCceeEEEECCHHHHHHHHh-cCCCEECCeEE
Confidence            8999999999999999999999987777663222233445679999999988888875 88888776443

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.02  E-value=6.5e-06  Score=60.74  Aligned_cols=67  Identities=15%  Similarity=0.241  Sum_probs=55.5

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      ++|||++||++++.++|.++++.++....+-|. |+...  . +.|+|.|....++.+|+ .+++..++|-.
T Consensus         1 Ttv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~~~~~--~-~~afV~F~~~~~a~~Al-~~~~~~i~g~~   68 (75)
T d2ghpa2           1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKN--F-RFARIEFARYDGALAAI-TKTHKVVGQNE   68 (75)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSS--S-EEEEEEESSHHHHHHHH-TTTTCEETTEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHhcCCceEEEEEEeecccc--c-eEEEEEEcchHHhHHHH-HhcCcEECCEE
Confidence            689999999999999999999999998877774 44433  2 68999999998888887 47887777644

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=3.4e-06  Score=64.83  Aligned_cols=77  Identities=10%  Similarity=0.109  Sum_probs=59.7

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCC--------CCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQ--------PDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~--------p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      ...++|||.+||++++.++|.+++++++....+.+.-+.        ...+....|||.|....++..|+..||+..+.+
T Consensus         6 ~~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g   85 (101)
T d2cpea1           6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG   85 (101)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECC
Confidence            567899999999999999999999999765433332221        112455689999999999999999999998887


Q ss_pred             ccccc
Q psy4687         104 CELGA  108 (339)
Q Consensus       104 ~el~~  108 (339)
                      -.+..
T Consensus        86 r~i~V   90 (101)
T d2cpea1          86 SKLKV   90 (101)
T ss_dssp             EECEE
T ss_pred             EEEEE
Confidence            66653

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=8.8e-06  Score=63.95  Aligned_cols=71  Identities=20%  Similarity=0.376  Sum_probs=60.0

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.+|||++||.+++-++|.+++++++-...+-+..--..|.   .|+|+|....++..|+..||+..+.|-.+.
T Consensus         7 ~r~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~~~~~~kG---~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~   77 (114)
T d2f9da1           7 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRG---TAYVVYEDIFDAKNACDHLSGFNVCNRYLV   77 (114)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTT---EEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcCCeEeecccccCCcCC---eEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            56899999999999999999999999888888764323344   699999999999999999999988875553

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=5.4e-06  Score=61.17  Aligned_cols=64  Identities=23%  Similarity=0.356  Sum_probs=53.6

Q ss_pred             EEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        37 lfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      |||++||++++.++|.+++++++ ...+.+.   ..|   +.|+|+|....++..|+..||+..+.|-.+.
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~~~---~~~---g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~   64 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD---KYK---GTAFVTLLNGEQAEAAINTFHQSRLRERELS   64 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSC-EEEEEEE---TTT---TEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred             CEEeCCCCcCCHHHHHHHHhccc-ccceeec---ccc---eeEEEEECCHHHHHHHHHHhCCccCCCCEEE
Confidence            79999999999999999999995 5555543   233   4799999999999999999999998886654

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=8.5e-06  Score=61.32  Aligned_cols=72  Identities=14%  Similarity=0.176  Sum_probs=60.4

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.|||.+||++++.++|.+++++++.+..+-| .|+...+ --..|||.|....++..++..||+..+.+-.+.
T Consensus         2 ~rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d~~tg~-~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~   74 (85)
T d2u2fa_           2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL-SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL   74 (85)
T ss_dssp             CCEEEETCCSSCCSHHHHHHHTSSSCEEEEEEECCCSSSC-CCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHhcCccceEEeeccccccc-cceeEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            35999999999999999999999999998887 4555332 235899999999999999999999988885543

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=3.3e-06  Score=65.64  Aligned_cols=74  Identities=14%  Similarity=0.228  Sum_probs=60.1

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      +...+|||++||++++.++|.+++++++-..++-+. |+... +.-..|||.|....++..|+..||+..+.+..+
T Consensus         6 ~~~rtl~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~tg-~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i   80 (104)
T d1p1ta_           6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETG-KPKGYGFCEYQDQETALSAMRNLNGREFSGRAL   80 (104)
T ss_dssp             HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTT-EEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCB
T ss_pred             CCCCEEEEECCCCcCCHHHHHHhhhcccccccccccccccee-ccCCceEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence            445689999999999999999999999988888763 34332 233369999999999999999999988877554

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.2e-05  Score=59.86  Aligned_cols=70  Identities=21%  Similarity=0.213  Sum_probs=58.2

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      +++|||.+||++++.++|.+++++++....+.|- |+... +.--.|+|.|....++..|+..||+..+.+-
T Consensus         9 ~~~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr   79 (83)
T d2cqca1           9 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSR-RSRGFAFVYFENVDDAKEAKERANGMELDGR   79 (83)
T ss_dssp             GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSS-SEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCCcccccccccccc-ccccceEEEECCHHHHHHHHHHcCCCEECCE
Confidence            4679999999999999999999999998888763 44432 2333799999999999999999999877763

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=6.6e-06  Score=63.79  Aligned_cols=71  Identities=14%  Similarity=0.280  Sum_probs=59.4

Q ss_pred             ccCCCCeEEeeecCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          30 ALHRTSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        30 ~lh~t~slfIk~IpP-~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      +-..++.|||.+||| .++.++|+++|++++-..++.++     |   ..|+|.|+...+++.|+..||+..+.+-.+..
T Consensus        11 ~~~~~~~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i~-----r---g~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V   82 (98)
T d1wf2a_          11 PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH-----K---GFAFVQYVNERNARAAVAGEDGRMIAGQVLDI   82 (98)
T ss_dssp             CSSCCCCEEEEEECTTTCCHHHHHHSSTTSSCEEEEEEE-----T---EEEEEEESSHHHHHHHHHTTTTCEETTEECEE
T ss_pred             CCCCCcEEEEeCCCcccCCHHHHHHHHhhcCCEEEEEEe-----C---CeEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence            334456799999987 57788999999999999999984     3   47999999999999999999999888866653

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.95  E-value=1.6e-05  Score=59.36  Aligned_cols=65  Identities=17%  Similarity=0.328  Sum_probs=56.2

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      +.+|||++||++++-++|.+++++++++..+.+.-  ..|.   .|.|.|....++..|+..|++..+.+
T Consensus         8 ~~tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~--~~~g---~afV~f~~~~~A~~A~~~l~g~~~~~   72 (83)
T d2b0ga1           8 NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVP--NRHD---IAFVEFTTELQSNAAKEALQGFKITP   72 (83)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHTTSTTEEEEEECT--TTCS---CEEEEESSHHHHHHHHHHHTTCBSST
T ss_pred             CCEEEEECCCCCCCHHHHHhhhccCccEEEeeeec--ccce---eEEEecCCHHHHHHHHHHhCCcEeCC
Confidence            46899999999999999999999999999998852  2233   59999999999999998999988754

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.7e-05  Score=59.78  Aligned_cols=73  Identities=18%  Similarity=0.297  Sum_probs=58.5

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..|||.+||++++.++|.++|++++-...+.+--+....+.--.|||.|....++..|+..||+..+.+-.+.
T Consensus         6 ~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~   78 (90)
T d1x5sa1           6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR   78 (90)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred             CEEEEECCCCcCCHHHHHHhhhccccccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            4599999999999999999999998877776543333323333699999999999999989999888876554

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.9e-06  Score=65.41  Aligned_cols=74  Identities=19%  Similarity=0.214  Sum_probs=56.5

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ++.|||.+||++++-++|.+++.+++....+.+.-.....+-...|+|.|....++..|+..||+..+.+-.|.
T Consensus        18 s~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~   91 (102)
T d2cpxa1          18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV   91 (102)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhhccceeeEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCEEEE
Confidence            57899999999999999999999987654443321111112234699999999999999999999988775554

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.2e-05  Score=60.55  Aligned_cols=71  Identities=10%  Similarity=0.217  Sum_probs=58.7

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      +.+|||++||+++|-++|.++|++++-...+.|..+. ..++--.|+|.|....++..|+. +++..+.|-.|
T Consensus         6 ~rtvfV~nlp~~~te~~l~~~F~~~G~v~~v~l~~~~-~~~~kG~afV~f~~~e~a~~al~-~~~~~~~g~~l   76 (85)
T d1zh5a2           6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDL   76 (85)
T ss_dssp             TTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHT-CCCCEETTEEC
T ss_pred             cCEEEEECCCCCCCHHHHHHHHHHhcccccceeeeec-cCCcceEEEEEEcCHHHHHHHHH-HCCCEECCEEE
Confidence            4689999999999999999999999999999997654 34554599999999988888774 67777777554

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.89  E-value=1e-05  Score=65.82  Aligned_cols=73  Identities=19%  Similarity=0.347  Sum_probs=60.5

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      ..|||.+||++++.++|.+++++++....+.+. |+.. .+.-..|+|.|....++..|+..||+..+.+-.+..
T Consensus        43 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t-~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V  116 (139)
T d1u6fa1          43 RNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRET-RQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV  116 (139)
T ss_dssp             SEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTT-TEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhhcccccccccccccc-ccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            469999999999999999999999998887764 3432 234457999999999999999999999888866653

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.1e-05  Score=59.94  Aligned_cols=70  Identities=17%  Similarity=0.227  Sum_probs=55.7

Q ss_pred             EEeeecCCCCCHHHHHHHHhhcCCeeEE--EecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          37 IFLRNLAPTITKAEVENLCKRYSGFLRV--AIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        37 lfIk~IpP~isr~ele~~ck~~~GF~~l--sLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      |||.+||++++.++|.+++.+++-....  -+-|+... +.--.|||.|....++..|+..+++..+.+-.+.
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g-~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~   72 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG-NSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT   72 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTC-SCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECE
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeecccc-ccCceEEEEECCHHHHHHHHHhCCCcEECCEEEE
Confidence            7999999999999999999999765432  24455433 3334799999999999999999999888875554

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=1.5e-05  Score=59.90  Aligned_cols=73  Identities=14%  Similarity=0.215  Sum_probs=55.9

Q ss_pred             CCeEEeeecCCCCCHH-HHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKA-EVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~-ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.+|||++||++++.+ +|.+++++++....+.| .++....+.-..|+|+|....++..|+ .+|+..+.|-.+.
T Consensus         4 ~~~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al-~~n~~~~~gr~l~   78 (86)
T d2ghpa3           4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS   78 (86)
T ss_dssp             TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred             CCEEEEECCCCCcccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHH-hcCCCEECCEEEE
Confidence            5689999999999765 59999999999988887 333333344457999999998888887 4888888775543

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.9e-06  Score=63.15  Aligned_cols=67  Identities=22%  Similarity=0.335  Sum_probs=54.8

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcC-CeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYS-GFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELGA  108 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~-GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~~  108 (339)
                      +++|||++||++++.++|.+++++++ -...+.     ..|   ..|+|+|....++..|+..||+..+.+-.|..
T Consensus         5 s~~i~V~nLp~~~t~~~l~~lF~~~G~~~~~~~-----~~k---g~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V   72 (88)
T d1wg1a_           5 SSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD-----RNK---RTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIV   72 (88)
T ss_dssp             CCCEEEESCCSSCCHHHHHHHTCSSCCCCEEEE-----GGG---TEEEECCSCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             CCEEEEeCCCCccChHHHHHHHHhcCceeeeee-----ccC---CceEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            56899999999999999999999996 233221     122   36999999999999999999999998876653

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=4.3e-05  Score=59.33  Aligned_cols=68  Identities=15%  Similarity=0.230  Sum_probs=55.5

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhc--cccccCccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLN--NIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~--~~~i~d~el  106 (339)
                      .+..|||++||++|+.++|.++|++++...++.+.   +.|+   .|||.|....++..|+..++  ...+.+..+
T Consensus        14 ps~~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~---~~k~---~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l   83 (104)
T d1wexa_          14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM---PFKR---QALVEFENIDSAKECVTFAADVPVYIAGQQA   83 (104)
T ss_dssp             CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE---TTTT---EEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhhhhcccceEEEEE---ecce---eEEEEeCCHHHHHHHHHHHcCCCcEEeeEEE
Confidence            47799999999999999999999999999999985   4455   49999999988888877664  344555443

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=2.5e-05  Score=60.10  Aligned_cols=68  Identities=9%  Similarity=0.256  Sum_probs=58.9

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .++|||.+||++++.++|.+++++++....+-+.   +.|+   .|+|.|....++..|+..||+..|.+..+.
T Consensus        18 ~~~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~---~~kg---~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~   85 (96)
T d1x4ga1          18 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF---PEKG---YSFVRFSTHESAAHAIVSVNGTTIEGHVVK   85 (96)
T ss_dssp             CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEE---TTTT---EEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHhCCceEEEEE---ecce---EEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            4679999999999999999999999999998885   3455   699999999999998888999888775543

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=97.76  E-value=1.7e-05  Score=60.68  Aligned_cols=70  Identities=11%  Similarity=0.171  Sum_probs=57.7

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+.+|||++||++++.++|.++|.+++....+...     .+.-+.|+|.|....++..|+..||+..+.+-.+.
T Consensus        15 ~~~~l~V~nL~~~~te~~l~~~F~~~g~v~~~~~~-----~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~   84 (96)
T d1fjca_          15 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQD-----GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS   84 (96)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEET-----TEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcccceeeeec-----CccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEE
Confidence            35789999999999999999999998876655432     23456899999999999999999999888875554

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=3e-05  Score=57.31  Aligned_cols=69  Identities=12%  Similarity=0.300  Sum_probs=58.8

Q ss_pred             cCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          31 LHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        31 lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..++++|||.+++  +|.++|.+++++++-...+.+.   +.++   .|+|.|....++..|+..+|+..+.|..+.
T Consensus         2 p~~~~ti~V~~~~--~te~~L~~~F~~~G~I~~v~~~---~~~~---~afV~f~~~~~A~~Ai~~lng~~~~g~~l~   70 (79)
T d2bz2a1           2 PRKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMD---PPRN---CAFVTYEKMESADQAVAELNGTQVESVQLK   70 (79)
T ss_dssp             CCCCCEEEEECSS--CCHHHHHHHHSTTCCCSCEEEE---TTTT---EEEEECSSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred             CCCCCEEEEECCC--CCHHHHHHHHhccCccceeeec---cCCC---EEEEEEcccHHHHHHHHHhCCCEECCEEEE
Confidence            4678999999995  8999999999999888777774   2333   699999999999999999999999887665

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.4e-05  Score=58.11  Aligned_cols=66  Identities=18%  Similarity=0.253  Sum_probs=52.8

Q ss_pred             cccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHh
Q psy4687          29 RALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWN   95 (339)
Q Consensus        29 ~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~   95 (339)
                      +...+++.|||++||++++.++|.+++++++-...+-| -|+... +--..|||+|....++..|+.+
T Consensus         3 ~~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg-~srG~aFV~f~~~~~a~~al~~   69 (90)
T d2cqga1           3 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTG-HSKGFGFVRFTEYETQVKVMSQ   69 (90)
T ss_dssp             CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSC-SEEEEEEEEESSHHHHHHHHHS
T ss_pred             CCCcCCCeEEEECCCCCCCHHHHHHHHHhhcccceeeeccCCCCc-ccCCEEEEEECCHHHHHHHHhc
Confidence            45678899999999999999999999999988888765 344432 2234899999999888877653

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=8.6e-06  Score=60.59  Aligned_cols=67  Identities=13%  Similarity=0.171  Sum_probs=52.4

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhcc-ccccCcccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNN-IRLRDCELG  107 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~-~~i~d~el~  107 (339)
                      +.|||++||++++.++|.+++.+++......+.   ..|+   .|+|.|....++..|+..||+ ..+.|-.+.
T Consensus         2 n~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~---~~rg---~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~   69 (80)
T d2cqha1           2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL---LKSG---YAFVDYPDQNWAIRAIETLSGKVELHGKIME   69 (80)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE---EETT---EEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhCcEEEeEEe---cccc---eEEEEECCHHHHHHHHHHhCCCeEECCEEEE
Confidence            469999999999999999999999764322221   2233   599999999999999999987 467776554

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=5.2e-05  Score=55.51  Aligned_cols=67  Identities=16%  Similarity=0.319  Sum_probs=53.3

Q ss_pred             EEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        37 lfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      |||.+||+++|.++|.+++++++-...+-|. ||...+ .--.|||+|....++..|+. +++..+.|-.
T Consensus         2 lfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d~~t~~-~kg~afV~f~~~~~a~~Al~-~~~~~l~Gr~   69 (75)
T d1hd0a_           2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR-SRGFGFVLFKESESVDKVMD-QKEHKLNGKV   69 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCEEEEECCCBTTTTB-CCSEEEEEESSHHHHHHHHH-TCCCCBTTBC
T ss_pred             EEEeCCCCcCCHHHHHHHHHhhccccccccccCCCCCC-cCceEEEEECCHHHHHHHHh-cCCCEECCCE
Confidence            8999999999999999999999999888763 444332 22359999999998888875 6777776633

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=8.7e-05  Score=57.41  Aligned_cols=74  Identities=12%  Similarity=0.034  Sum_probs=55.8

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      -.+..|||++||.+++.++|.++++.++......+-=.....+.-..|+|.|....++..|+ .+++..|.+-.+
T Consensus        13 ~~~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~-~~~~~~i~gR~i   86 (104)
T d1wg5a_          13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL-KKHKERIGHRYI   86 (104)
T ss_dssp             SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHH-TTTTCCSSSSCC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHH-hhCCCEEcceEE
Confidence            35567999999999999999999999976554333223333456678999999999888776 488877766443

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=2e-05  Score=58.88  Aligned_cols=70  Identities=13%  Similarity=0.144  Sum_probs=55.9

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCe---eEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGF---LRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF---~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      .+.|+|++||++++.++|.++++.++..   ..+.-.   +..++-..|+|.|....++..|+..||+..+.+-.+
T Consensus         9 ~~~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~---~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i   81 (86)
T d2cqpa1           9 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN---EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV   81 (86)
T ss_dssp             SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC---SSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcccceeEEEEEeC---CCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEEE
Confidence            4679999999999999999999998653   333332   234566789999999999999999999988876443

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=6.6e-05  Score=54.91  Aligned_cols=71  Identities=13%  Similarity=0.197  Sum_probs=53.4

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ...|||.+||+++|.++|.+++++++....+.+. |+... +--..|+|+|....++.+|+ .+++..|.+-.+
T Consensus         2 ~r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~-~~~g~afV~f~~~e~~~~al-~~~~~~l~Gr~i   73 (79)
T d1l3ka2           2 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG-KKRGFAFVTFDDHDSVDKIV-IQKYHTVNGHNC   73 (79)
T ss_dssp             CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHH-HCSCCEETTEEC
T ss_pred             CCEEEECCCCCcCCHHHHHHHHHHhccccccccccCCCCc-ccccEEEEEEcCHHHHHHHH-HhCCCEECCEEE
Confidence            3579999999999999999999999988877764 33332 23347999998776555554 578877776443

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=5.1e-05  Score=59.02  Aligned_cols=66  Identities=15%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             CCCCeEEeee--cCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          32 HRTSSIFLRN--LAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        32 h~t~slfIk~--IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      +.|.+|+|.+  ||+++|.++|.+++.+++....+.+-   +.|+   .|+|.|....++..|+..||+..|.+
T Consensus        16 ~pt~~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~---~~k~---~aFV~f~~~e~A~~A~~~lng~~i~~   83 (101)
T d2cq2a1          16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP---PNKP---YSFARYRTTEESKRAYVTLNGKEVVD   83 (101)
T ss_dssp             SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC---TTCS---CEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred             CCCceEEEECCCCCCCCCHHHHHHHHHhhCcccEEeec---cCcc---EEEEEECCHHHHHHHHHHhCCCCCCC
Confidence            5678999988  99999999999999999999988775   3344   69999999999999999999988754

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.00012  Score=56.60  Aligned_cols=69  Identities=20%  Similarity=0.233  Sum_probs=58.2

Q ss_pred             CCeEEeeecCCC-CCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPT-ITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~-isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+.|||.+|||. |+.++|.++|++++-..++.+--  ..|.   .|.|.|....++..|+..||+..+.|-.+.
T Consensus         2 ~~~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~--~~kg---~afV~f~~~~~A~~ai~~lng~~l~g~~l~   71 (109)
T d2adca1           2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF--NKKE---NALVQMADGNQAQLAMSHLNGHKLHGKPIR   71 (109)
T ss_dssp             CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECC--TTSC---CEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred             CCEEEEeCCCcccCCHHHHHHHHhhccccceEEEEe--cccc---eEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            478999999885 99999999999999999999841  1222   599999999999999999999988876554

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=3.4e-05  Score=58.42  Aligned_cols=72  Identities=17%  Similarity=0.246  Sum_probs=58.4

Q ss_pred             CCCeEEeeecCCCCCHHHH---HHHHhhcCCeeEEEec-CCCCC--CCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          33 RTSSIFLRNLAPTITKAEV---ENLCKRYSGFLRVAIA-DPQPD--RRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~el---e~~ck~~~GF~~lsLS-DP~p~--krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      +.++|||.+|||+++.++|   .+++.+++-...+.+. ||...  +.+--.|||+|....++..|+..||+..+.|-
T Consensus         7 q~n~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~gr   84 (89)
T d2cpia1           7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR   84 (89)
T ss_dssp             CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred             ecCEEEEECCCCccCHHHHHHHHHHhcccCCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECCE
Confidence            4567999999999999999   6678888888888884 44432  23445789999999999999999999887763

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=3.1e-05  Score=58.40  Aligned_cols=67  Identities=21%  Similarity=0.427  Sum_probs=50.7

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      .+++|||.+||++++.++|.+++.+++....+-+.  ...+.   .|+|+|....++..|+.  ++..|.+-.+
T Consensus         4 ~s~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~--~~~~g---fafV~f~~~~~a~~a~~--~~~~i~g~~l   70 (88)
T d1wf0a_           4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIP--KPFRA---FAFVTFADDQIAQSLCG--EDLIIKGISV   70 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECC--SSCCS---CCEEECSCHHHHHHTTT--CEEEETTEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEe--eccCc---eEEEEECCHHHHHHHHh--CCCEECCEEe
Confidence            46899999999999999999999999998888764  33444   49999998876665542  4444444333

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0001  Score=56.79  Aligned_cols=72  Identities=18%  Similarity=0.278  Sum_probs=54.2

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ..+|||.+||++++.++|.++++.+ |-..+.+ .++....+.-..|+|.|....++++++ ++|+..+.+-.+.
T Consensus        15 ~~~v~V~nLp~~~te~~l~~~f~~~-g~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~-~~~~~~~~gr~l~   87 (104)
T d1wi8a_          15 PYTAFLGNLPYDVTEESIKEFFRGL-NISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR   87 (104)
T ss_dssp             CEEEEEESCCSSCCHHHHHHHTTTS-CEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHh-ccccceeeeeeccCCCcceeeeEEECCHHHHHHHH-HcCCCEECCEEEE
Confidence            5789999999999999999999998 4555443 344333344448999999988876554 6898888775543

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=6.1e-05  Score=58.49  Aligned_cols=71  Identities=21%  Similarity=0.232  Sum_probs=56.7

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .+|||.+||++++-++|.++++.++....+-|- |+.. .+.--.|+|.|....++..|+ ++|+..+.+-.+.
T Consensus        19 ~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d~~t-g~~kG~afV~F~~~e~a~~A~-~l~g~~~~G~~l~   90 (101)
T d2cq4a1          19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNS-RRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPII   90 (101)
T ss_dssp             TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCS-SSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeecCCC-ccccceEEEEECCHHHHHHHH-HHCCCEECCEEEE
Confidence            579999999999999999999999999888885 3322 222236999999988888887 5999888775543

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2.9e-05  Score=60.62  Aligned_cols=68  Identities=10%  Similarity=0.204  Sum_probs=57.4

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      ..+..|||++||.+|+-++|.++++++|....+.+.-. ..+   -.|+|.|....++..|+..||+..|.+
T Consensus         5 s~~~~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~-~~~---g~aFV~f~~~e~A~~Ai~~ln~~~l~~   72 (108)
T d2adba1           5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQ---FQALLQYADPVSAQHAKLSLDGQNIYN   72 (108)
T ss_dssp             CCEEEEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEE-TTE---EEEEEEESCHHHHHHHHHHHHSCCSST
T ss_pred             CCeEEEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEee-CCC---CeEEEEECCHHHHHHHHHHHCCCEecc
Confidence            34567999999999999999999999999999888622 122   359999999999999999999988854

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00021  Score=55.21  Aligned_cols=72  Identities=17%  Similarity=0.241  Sum_probs=55.5

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ..+.|||.+||++++.++|.+++++++-...+-|- |+... +.-..|+|.|....++..|+..+|. .+.+-.+
T Consensus         9 ~~~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg-~~kg~afV~f~~~~~A~~Ai~~~~~-~l~Gr~l   81 (103)
T d2cqda1           9 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG-KSRGYGFVTMADRAAAERACKDPNP-IIDGRKA   81 (103)
T ss_dssp             SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSC-CCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred             CCcEEEEeCCCCcCcHHHHHHHHhhcccccceecccccccc-ccCCeEEEEECCHHHHHHHHHHCCC-cCCCEEE
Confidence            34679999999999999999999999998888873 44322 2234799999999988888876653 5655444

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=4e-05  Score=58.00  Aligned_cols=71  Identities=15%  Similarity=0.330  Sum_probs=56.1

Q ss_pred             CCeEEeeecCCCCCHHHHHH----HHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          34 TSSIFLRNLAPTITKAEVEN----LCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~----~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      +.+|||.+||++++-++|.+    ++++++....+.+..-..   ....|+|.|....++..|+..+|+..+.+..+.
T Consensus         3 ~~tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~~~~---~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~   77 (91)
T d1nu4a_           3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLK---MRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR   77 (91)
T ss_dssp             CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHH---HTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEeeecc---CCCceEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            46899999999999888865    567777777777643212   233699999999999999999999888886654

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00013  Score=55.45  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=53.2

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcC-CeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHHhhcccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYS-GFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIR  100 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~-GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~  100 (339)
                      +.|||.+||++++.++|.+++++++ +...+-|- |+....+....|||.|....++..|+..|++..
T Consensus         2 ~rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~   69 (96)
T d2disa1           2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGR   69 (96)
T ss_dssp             EEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCC
T ss_pred             CEEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCC
Confidence            4699999999999999999999997 68888875 333333444589999999999888888786543

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=9.9e-05  Score=54.44  Aligned_cols=68  Identities=16%  Similarity=0.268  Sum_probs=53.8

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      +.|||++||++++-++|.+++.+++....+.| -||...+. -..|||+|....++++|+. +++..+++-
T Consensus         1 cklfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~-kG~aFV~f~~~~~a~~al~-~~~~~i~Gr   69 (77)
T d1uawa_           1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS-RGFGFVTFMDQAGVDKVLA-QSRHELDSK   69 (77)
T ss_dssp             CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSC-SSEEEECCCCTTHHHHHHH-TTTCCCSSC
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhCCcceeeeecccCCCCc-cceEEEEECCHHHHHHHHH-cCCCEECCe
Confidence            46999999999999999999999998776655 56654321 1379999999988888875 677777663

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.00012  Score=57.10  Aligned_cols=69  Identities=13%  Similarity=0.159  Sum_probs=58.2

Q ss_pred             CCCeEEeeecCCCCC-----HHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTIT-----KAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~is-----r~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .++.|||.+|++.|.     |++|+++|+.++-...+.+-   +.++   .|+|.|....++..|+..||+..+.+-.+.
T Consensus         4 ~~~~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~---k~~~---~afV~f~~~~~A~~Ai~~lng~~~~g~~l~   77 (104)
T d1weya_           4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF---KSFK---RVRINFSNPLSAADARLRLHKTEFLGKEMK   77 (104)
T ss_dssp             CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE---TTTT---EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred             CCceEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEe---cCCC---EEEEEECCHHHHHHHHHHhcccccCCCEeE
Confidence            467899999999983     57899999999998888774   4444   699999999999999999999988876654

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00037  Score=53.60  Aligned_cols=70  Identities=17%  Similarity=0.180  Sum_probs=53.1

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~e  105 (339)
                      -.+.+|||++||.+++.++|.+++..+ |-..+.+ -++.  .+.-..|+|.|....++..|+. +|+..|.+=.
T Consensus        13 ~~~~~v~v~nLp~~~te~dl~~~F~~~-~~~~v~~~~~~~--g~~~G~afVeF~~~~~a~~Al~-~~~~~i~gR~   83 (102)
T d1weza_          13 TTGHCVHMRGLPYRATENDIYNFFSPL-NPMRVHIEIGPD--GRVTGEADVEFATHEDAVAAMA-KDKANMQHRY   83 (102)
T ss_dssp             SSSCEEEEESCCTTCCHHHHHHSSCSC-CCSEEEEEESSS--SCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSC
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHhcc-CcceeeeEEecC--CcceEEEEEEECCHHHHHHHHH-cCCCEECCEE
Confidence            344689999999999999999999998 4333333 2332  3455789999999999988864 8888887643

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00032  Score=52.25  Aligned_cols=67  Identities=13%  Similarity=0.249  Sum_probs=53.4

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      ..|||.+||++++-++|.+++++++-...+.| -|+... +.--.|+|+|....++..|+. +++..+.|
T Consensus         7 ~~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg-~~kG~afV~f~~~~~a~~ai~-~~~~~i~G   74 (84)
T d1l3ka1           7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTK-RSRGFGFVTYATVEEVDAAMN-ARPHKVDG   74 (84)
T ss_dssp             GEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-CEEEEEEEEESSHHHHHHHHH-TCSCEETT
T ss_pred             cEEEEECCCCCCCHHHHHHHHHhhccccceeecccccCC-CcccEEEEEEcCHHHHHHHHH-hCCCEECC
Confidence            57999999999999999999999999888876 455443 233489999998887777764 57766655

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00021  Score=55.57  Aligned_cols=70  Identities=16%  Similarity=0.279  Sum_probs=54.3

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe-cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAI-ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsL-SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ..|||.+||++++-++|.+++.+++-...+.| -|+... +--..|+|.|....++..|+ .+++..|.+-.+
T Consensus        21 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~-~~kg~aFV~f~~~~~a~~al-~~~~~~l~G~~i   91 (103)
T d1x4ba1          21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASK-RSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVV   91 (103)
T ss_dssp             TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTS-SCCSEEEEECSSHHHHHHHH-TSCSEEETTEEE
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHhhCcccceeecccccCC-CccCeEEEEECCHHHHHHHH-HhCCCeECCEEE
Confidence            57999999999999999999999999999988 344422 22246999999888877766 467766665433

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00025  Score=52.94  Aligned_cols=66  Identities=12%  Similarity=0.210  Sum_probs=53.1

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhh--ccccccCcc
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNL--NNIRLRDCE  105 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L--~~~~i~d~e  105 (339)
                      +..|||++||++++.++|.+++++++....+-+.   +.+   +.|+|.|....++..|+..+  ++..+.|-.
T Consensus         8 s~~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~---~~~---~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~   75 (88)
T d2cq1a1           8 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILML---KGK---NQAFLELATEEAAITMVNYYSAVTPHLRNQP   75 (88)
T ss_dssp             CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE---TTT---TEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhccccccccccc---ccc---eEEEEEeCCHHHHHHHHHHHccCCCccCCCE
Confidence            4589999999999999999999999999998876   233   36999999988888777654  455555533

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=97.23  E-value=3.4e-05  Score=58.75  Aligned_cols=73  Identities=19%  Similarity=0.269  Sum_probs=54.4

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      ...+|||.+||++++.++|.+++++++....+-+-++... +.-..|||.|....++..|+. +|+..+.+..+.
T Consensus        12 ~~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~g-~~kg~afv~F~~~e~a~~Al~-~~g~~~~g~~i~   84 (91)
T d1fjeb1          12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTG-TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK   84 (91)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEE-TTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEE
T ss_pred             CCcEEEEeCccCcchHHHHHHHHhcCCcEEEeeeeecCCC-CccEEeEEeeCCHHHHHHHHh-cCCcEECCEEEE
Confidence            4568999999999999999999999965444333333211 111389999999999988884 898888875543

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00016  Score=55.62  Aligned_cols=72  Identities=17%  Similarity=0.168  Sum_probs=52.7

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeE-EEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLR-VAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~-lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      ...+|||++||.+++.++|.++++.++.-.. +-+-+.. ..+.-..|+|.|....++..|+. +|+..|.+-.+
T Consensus         7 ~~~~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~~~-~g~~~G~afV~F~s~~~a~~Al~-~n~~~i~gr~i   79 (103)
T d2cpya1           7 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSER-LHRKKLNGREA   79 (103)
T ss_dssp             CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGG-GCSEEETTEEE
T ss_pred             CceEEEEeCCCCCCCHHHHhhhhcccceEEEEEEEEeCC-CCCcCccEEEEECCHHHHHHHHh-cCCCeECCcEE
Confidence            4467999999999999999999999865321 2332222 11334589999999999998874 88877776443

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=5.6e-05  Score=56.88  Aligned_cols=71  Identities=13%  Similarity=0.164  Sum_probs=51.8

Q ss_pred             eEEeeecCCCCCHHHHHHHHhhcCCeeEEEec--CCCCCC---CceEEEEEEecCcccHHHHHHhhccccccCcccc
Q psy4687          36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIA--DPQPDR---RWFRRGWVTFRRDVDIKEICWNLNNIRLRDCELG  107 (339)
Q Consensus        36 slfIk~IpP~isr~ele~~ck~~~GF~~lsLS--DP~p~k---rf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el~  107 (339)
                      .|||.+||++++.++|.+++++++....+.+.  ++....   +.-..|+|+|....++..|+ +||+..+.+-.+.
T Consensus         3 rlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~-~l~g~~~~Gr~l~   78 (90)
T d1u2fa_           3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK   78 (90)
T ss_dssp             EEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGG-GGSSCCSSSSCCC
T ss_pred             EEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHH-hhCCcEECCEEEE
Confidence            59999999999999999999998765544442  111111   12236999999988887776 5999888875554

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0003  Score=55.10  Aligned_cols=70  Identities=19%  Similarity=0.250  Sum_probs=51.5

Q ss_pred             CCCeEEeeecCCCCCHHHHHHHHhhcCCeeE-EEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCc
Q psy4687          33 RTSSIFLRNLAPTITKAEVENLCKRYSGFLR-VAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDC  104 (339)
Q Consensus        33 ~t~slfIk~IpP~isr~ele~~ck~~~GF~~-lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~  104 (339)
                      .+..|||++||.+++.++|.++++.++.... +-+-+ ...-+.--.|+|.|....++.+|+ .+|+..|.+=
T Consensus        17 ~~~~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~-~~~g~~~G~afVeF~~~e~a~~al-~~~~~~i~gR   87 (112)
T d1wela1          17 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAY-GPNGKATGEGFVEFRNEADYKAAL-CRHKQYMGNR   87 (112)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEE-CTTSSEEEEEEEEBSSSHHHHHHH-TSCSBCSTTS
T ss_pred             CCeEEEEecCCCcCcHHHHhhHHhhccccccceeeec-CcccceeeEEEEEECCHHHHHHHH-HcCCCcCCCE
Confidence            3568999999999999999999998765322 12221 222345568999999998888776 4888877663

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00064  Score=49.75  Aligned_cols=57  Identities=16%  Similarity=0.360  Sum_probs=45.5

Q ss_pred             EEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCceEEEEEEecCcccHHHHHH
Q psy4687          37 IFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWFRRGWVTFRRDVDIKEICW   94 (339)
Q Consensus        37 lfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~R~GWV~f~~~~~~~~~~~   94 (339)
                      |||.+||++++.++|.+++++++-...+-|. |+...+ ---.|+|+|....++..|+.
T Consensus         2 lfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d~~t~~-~rG~~FV~f~~~~~a~~al~   59 (75)
T d1x0fa1           2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK-RRGFCFITFKEEEPVKKIME   59 (75)
T ss_dssp             EEEESCCSSCCHHHHHHHHHHHSCEEEEECCCCTTTCC-TTCCEEEEESSSHHHHHHTT
T ss_pred             EEEcCCCCCCCHHHHHHHHHHhCCcccccccccccccc-cccEEEEEECCHHHHHHHHh
Confidence            8999999999999999999999888888874 544322 11259999999988877653

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00087  Score=55.30  Aligned_cols=74  Identities=11%  Similarity=0.164  Sum_probs=57.3

Q ss_pred             CCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccCccc
Q psy4687          32 HRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRDCEL  106 (339)
Q Consensus        32 h~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d~el  106 (339)
                      -...+|||++||++++.++|.+++++++....+.+--.....+---.|+|.|....++..|+. +++..+.|..+
T Consensus        95 ~~~~~i~V~~lp~~~te~~L~~~f~~~G~v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~-~~~~~~~G~~i  168 (183)
T d1u1qa_          95 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNC  168 (183)
T ss_dssp             CCCSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHT-SSCEEETTEEE
T ss_pred             cccceeEEccCCCcCCHHHHhhhhccCCceeeeeeecccccCccceeEEEEECCHHHHHHHHH-hCCCeECCEEE
Confidence            344689999999999999999999999998888775433333334579999999988888875 56666666444

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.00098  Score=50.14  Aligned_cols=65  Identities=5%  Similarity=0.014  Sum_probs=52.9

Q ss_pred             CCeEEeeecCCC-CCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhc--cccccCc
Q psy4687          34 TSSIFLRNLAPT-ITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLN--NIRLRDC  104 (339)
Q Consensus        34 t~slfIk~IpP~-isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~--~~~i~d~  104 (339)
                      +..|+|.+||.. +|+.||.++|+.+|....+.+.   +.++   .|||.|+...++..|+..++  +..+.+-
T Consensus         8 sr~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~---~~k~---~afV~f~~~~~A~~A~~~l~~~~~~~~gr   75 (89)
T d1x4da1           8 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL---NKIN---EAFIEMATTEDAQAAVDYYTTTPALVFGK   75 (89)
T ss_dssp             CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC---SSSS---CEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred             CcEEEEECCCCCcCCHHHHHHHHHhhCCeEEEEee---ccce---EEEEEEcchhhHHHHHHHHhhCCCccCCc
Confidence            346999999986 8999999999999999999995   3344   59999999999888887664  4455553

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.58  E-value=0.0011  Score=50.67  Aligned_cols=67  Identities=12%  Similarity=0.131  Sum_probs=54.0

Q ss_pred             CCCeEEeeecCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHH--hhccccccCcc
Q psy4687          33 RTSSIFLRNLAP-TITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICW--NLNNIRLRDCE  105 (339)
Q Consensus        33 ~t~slfIk~IpP-~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~--~L~~~~i~d~e  105 (339)
                      .+..|||.+||. .+|.++|.++++++|-...+.+.   +.|+   .|+|.|....++..|+.  +++++.+.|-.
T Consensus        17 ~~~~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~~---~~k~---~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~   86 (99)
T d1x4fa1          17 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---RMKS---QAFIEMETREDAMAMVDHCLKKALWFQGRC   86 (99)
T ss_dssp             CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---TTTT---EEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred             CCCEEEEeCCcCCccCHHHHHhhhccccceeEEEEe---ecCC---cEEEEecchHHHHHHHHHHhcCCceECCEE
Confidence            356899999997 59999999999999999999885   3343   79999999998888776  45666666633

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.01  Score=46.06  Aligned_cols=62  Identities=13%  Similarity=0.146  Sum_probs=50.1

Q ss_pred             eEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCc-ccHHHHHHhhccccccC
Q psy4687          36 SIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRD-VDIKEICWNLNNIRLRD  103 (339)
Q Consensus        36 slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~-~~~~~~~~~L~~~~i~d  103 (339)
                      ..||.+||+.+|+++|-+++.+++-..++.+..+   +   ..|+|.|... .++.+++..+++..+..
T Consensus        13 ~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i~~~---k---g~gfV~F~~~~~~A~~a~~~~~~~~l~~   75 (113)
T d1owxa_          13 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG---A---KEGIILFKEKAKEALGKAKDANNGNLQL   75 (113)
T ss_dssp             EEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT---C---SEEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred             EEEECCCCCCCCHHHHHHHHHhcCChheEEEecC---C---ceEEEEecCcHHHHHHHHHHhcCCceec
Confidence            4599999999999999999999999999999633   3   3799999664 46667778888765543

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.00046  Score=53.74  Aligned_cols=93  Identities=19%  Similarity=0.259  Sum_probs=68.4

Q ss_pred             HhhhccCCccCCCCCCCCCCCcccCCCCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcc
Q psy4687           8 MMLNSYNNIINGGESKNEPPPRALHRTSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDV   87 (339)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~lh~t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~   87 (339)
                      .+.|-|.||-+-..+.    .......+.+.|++++.+++-+.|++++.++|-...+.|-++... +--..|+|.|....
T Consensus         5 ~~~n~y~nP~~~~~~~----~~~~~~~~~~~v~~~~~~~~ed~l~e~f~k~G~I~~v~I~~~~~~-~~~G~~fV~f~~~~   79 (104)
T d1jmta_           5 ALLNIYRNPQNSSQSA----DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGD-HLVGNVYVKFRREE   79 (104)
T ss_dssp             EEEEEEECCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSS-SSEEEEEEEESCHH
T ss_pred             EEEcccCCcccccccc----CCcccccchHHhhhhhhhhhHHHHHHHhccCCCEEEEEeecCCCC-CEeeEEEEEEechh
Confidence            3456677775433321    122234467889999999999999999999999999999876543 44577999999999


Q ss_pred             cHHHHHHhhccccccCcc
Q psy4687          88 DIKEICWNLNNIRLRDCE  105 (339)
Q Consensus        88 ~~~~~~~~L~~~~i~d~e  105 (339)
                      ++..|+..||+..+.+-.
T Consensus        80 ~A~~Ai~~lng~~~~gr~   97 (104)
T d1jmta_          80 DAEKAVIDLNNRWFNGQP   97 (104)
T ss_dssp             HHHHHHHHHTTCEETTEE
T ss_pred             HHHHHHHHHCCCEECCEE
Confidence            999999999998777643

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0019  Score=41.42  Aligned_cols=31  Identities=23%  Similarity=0.525  Sum_probs=27.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchHH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAEK  332 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~  332 (339)
                      .+-.|.|+.|+|-|.-..-+.+|+...|.+.
T Consensus         5 gekP~~C~~C~k~F~~~~~L~~H~~~~H~~~   35 (36)
T d2ct1a2           5 GEKPYECYICHARFTQSGTMKMHILQKHTEN   35 (36)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHHSSSS
T ss_pred             CCCCEeCCCCcccccchHHHHHHcccccCCC
Confidence            4567999999999999999999999999864

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.035  Score=42.32  Aligned_cols=69  Identities=19%  Similarity=0.305  Sum_probs=53.4

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEe--cCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAI--ADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsL--SDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      +-|.||.+||+++.+++.+.+.-.|-+.|+.-  ++......=+-+++|.|+...++.+-....++....|
T Consensus         2 tKvVvRrLPP~Lte~~F~~~l~~~~~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F~D   72 (91)
T d1uw4a_           2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD   72 (91)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred             ceEEEecCCCCCCHHHHHHHhCCcCceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEc
Confidence            45789999999999999999998877777665  4433333556789999999998888777777654433

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.022  Score=46.35  Aligned_cols=58  Identities=14%  Similarity=0.283  Sum_probs=46.3

Q ss_pred             CeEEeeecCCCCCHHHHHHHHhhcCCeeEEEec-CCCCCCCce-EEEEEEecCcccHHHHHH
Q psy4687          35 SSIFLRNLAPTITKAEVENLCKRYSGFLRVAIA-DPQPDRRWF-RRGWVTFRRDVDIKEICW   94 (339)
Q Consensus        35 ~slfIk~IpP~isr~ele~~ck~~~GF~~lsLS-DP~p~krf~-R~GWV~f~~~~~~~~~~~   94 (339)
                      .+|||++||++++-++|.+++++++....+-+. |+..  +.. ..|.|.|....++..++.
T Consensus         7 r~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~   66 (183)
T d1u1qa_           7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT--KRSRGFGFVTYATVEEVDAAMN   66 (183)
T ss_dssp             HEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT--CCEEEEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHcCCEEEEEeeecccC--CCccCceecccCCHHHHHHHHH
Confidence            469999999999999999999999987777653 4443  233 489999999887776654

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.011  Score=36.00  Aligned_cols=23  Identities=39%  Similarity=0.709  Sum_probs=21.7

Q ss_pred             eecCCCCcccccChhhHHhhhhh
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .|.|+.|+|-|.-..-+.+|++.
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r~   24 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIKT   24 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHHG
T ss_pred             CEECCcCCCeecchHHhhhhcCc
Confidence            58999999999999999999987

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.037  Score=42.16  Aligned_cols=71  Identities=17%  Similarity=0.271  Sum_probs=54.1

Q ss_pred             CCCeEEeeec--CCCC--------CHHHHHHHHhhcCCeeEEEecCCCCCCCce--EEEEEEecCcccHHHHHHhhcccc
Q psy4687          33 RTSSIFLRNL--APTI--------TKAEVENLCKRYSGFLRVAIADPQPDRRWF--RRGWVTFRRDVDIKEICWNLNNIR  100 (339)
Q Consensus        33 ~t~slfIk~I--pP~i--------sr~ele~~ck~~~GF~~lsLSDP~p~krf~--R~GWV~f~~~~~~~~~~~~L~~~~  100 (339)
                      .|..|.|+|+  |-.+        -+++|.+.|.+++....+.+..|.....-+  =.++|.|.+..++..|...||+..
T Consensus         3 Ps~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~   82 (104)
T d1o0pa_           3 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK   82 (104)
T ss_dssp             CCSEEEEESSCCTTTTTSHHHHHHHHHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCC
T ss_pred             CCcEEEEeCCCCHHHcCCchhHHHHHHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCE
Confidence            3678889998  4333        356788899999999999996554332221  169999999999999999999977


Q ss_pred             ccC
Q psy4687         101 LRD  103 (339)
Q Consensus       101 i~d  103 (339)
                      +.+
T Consensus        83 f~g   85 (104)
T d1o0pa_          83 FAN   85 (104)
T ss_dssp             SSS
T ss_pred             ECC
Confidence            766

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.56  E-value=0.017  Score=36.62  Aligned_cols=30  Identities=13%  Similarity=0.335  Sum_probs=25.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchHH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAEK  332 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e~  332 (339)
                      .+-.|.|+.|+|.|.-..-+.+|++ .|.+.
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~H~r-~Ht~~   33 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCARHLK-VHTDT   33 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHG-GGTSC
T ss_pred             CCccccCCCCCCcccChHHHHHHcc-ccCCc
Confidence            4567999999999999999999986 57653

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=93.36  E-value=0.019  Score=34.83  Aligned_cols=23  Identities=13%  Similarity=0.563  Sum_probs=21.2

Q ss_pred             eecCCCCcccccChhhHHhhhhh
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .|.|+.|+|-|.-..-+..|++.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r~   24 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             cCCCCCCCCCCCCchHcccccCc
Confidence            48999999999999999999975

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.026  Score=33.57  Aligned_cols=23  Identities=22%  Similarity=0.249  Sum_probs=20.5

Q ss_pred             eecCCCCcccccChhhHHhhhhh
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .|.|..|||-|.-...+.+|.+.
T Consensus         2 Py~C~eCgK~F~~~s~L~~Hqri   24 (26)
T d1x6ea2           2 PYKCLECGKAFSQNSGLINHQRI   24 (26)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH
T ss_pred             CccCCCCcCeeccCcccccCccC
Confidence            48999999999999999999763

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.029  Score=34.02  Aligned_cols=26  Identities=27%  Similarity=0.630  Sum_probs=23.1

Q ss_pred             eecCC--CCcccccChhhHHhhhhhcch
Q psy4687         305 KWLCP--LSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       305 K~rC~--~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      .|-|+  .|+|-+-.|.=+|||+++.|+
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            37794  699999999999999999985

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.35  E-value=0.033  Score=33.57  Aligned_cols=23  Identities=22%  Similarity=0.522  Sum_probs=21.2

Q ss_pred             eecCCCCcccccChhhHHhhhhh
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .|.|+.|+|-|.-..-+..|++.
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH
T ss_pred             CccCCCCcCEecccccccccCCC
Confidence            58999999999999999999874

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.59  E-value=0.18  Score=37.76  Aligned_cols=70  Identities=11%  Similarity=0.286  Sum_probs=55.1

Q ss_pred             CCCeEEeeec--CCCCC---------HHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccc
Q psy4687          33 RTSSIFLRNL--APTIT---------KAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRL  101 (339)
Q Consensus        33 ~t~slfIk~I--pP~is---------r~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i  101 (339)
                      ....|+|+|+  |..+-         +++|.+.|.+++-...+.+..+.+ +.   .|+|.|....++..|+..||+..+
T Consensus         7 ~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~~~~G~V~~v~~~~~~~-~G---~~fV~f~~~e~A~~A~~~lng~~~   82 (99)
T d2dita1           7 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHP-DG---VASVSFRDPEEADYCIQTLDGRWF   82 (99)
T ss_dssp             SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCT-TC---EEEEECSCHHHHHHHHHHSTTCEE
T ss_pred             CccEEEEccCCCHHHhhcchHHHHHHHHHHHHHhcCcccEEEEeccCCCC-cc---EEEEEECCHHHHHHHHHHhCCcEE
Confidence            3567899998  65432         467889999999999998876654 23   589999999999999999998877


Q ss_pred             cCccc
Q psy4687         102 RDCEL  106 (339)
Q Consensus       102 ~d~el  106 (339)
                      .+-.+
T Consensus        83 ~gr~i   87 (99)
T d2dita1          83 GGRQI   87 (99)
T ss_dssp             TTEEC
T ss_pred             CCEEE
Confidence            77444

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=0.039  Score=34.87  Aligned_cols=30  Identities=17%  Similarity=0.399  Sum_probs=25.9

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhhcchH
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFNKHAE  331 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~nKH~e  331 (339)
                      .+-.|.|..|+|-|.-..-+.+|++.-|.+
T Consensus         5 gekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           5 GEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             CCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            356799999999999999999999876654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.051  Score=32.49  Aligned_cols=24  Identities=33%  Similarity=0.718  Sum_probs=22.1

Q ss_pred             eecCCCCcccccChhhHHhhhhhc
Q psy4687         305 KWLCPLSGKKFKGPDFIRKHIFNK  328 (339)
Q Consensus       305 K~rC~~C~KlFk~~eFV~KHI~nK  328 (339)
                      ||.|+.|+---+-|.-+.|||+.-
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsH   24 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTH   24 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHT
T ss_pred             CccccccCcccCCHHHHHHHHHHh
Confidence            689999999999999999999863

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.054  Score=34.98  Aligned_cols=28  Identities=32%  Similarity=0.670  Sum_probs=24.9

Q ss_pred             CCeecCCCCcccccChhhHHhhhhhcch
Q psy4687         303 TDKWLCPLSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       303 e~K~rC~~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      +-.|.|..|+|-|.-..-+..|++.-|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht   30 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHT   30 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSC
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccC
Confidence            3469999999999999999999988775

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.16  E-value=0.077  Score=33.00  Aligned_cols=26  Identities=19%  Similarity=0.326  Sum_probs=23.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+-.|.|..|+|.|.-..-+.+|.+.
T Consensus         4 gekpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           4 GEKPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             TCCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             CCCCeeCCCCCCEeCchHHhHhhccc
Confidence            46679999999999999999999764

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.88  E-value=0.093  Score=33.20  Aligned_cols=25  Identities=20%  Similarity=0.418  Sum_probs=22.5

Q ss_pred             cCCeecCCCCcccccChhhHHhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIF  326 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~  326 (339)
                      .+-.|.|+.|+|.|.-..-+..|++
T Consensus         8 geKPy~C~~C~k~F~~~~~L~~H~r   32 (37)
T d1p7aa_           8 GIKPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CccCeEeCCCCCEecCHHHHHHHHh
Confidence            4567999999999999999999975

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.24  E-value=0.096  Score=33.28  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=23.4

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .+-.|.|+.|+|-|.-..-+.+|.+.
T Consensus         9 ~ekpy~C~~CgK~F~~~s~L~~H~r~   34 (38)
T d2cota2           9 ERRRYKCDECGKSFSHSSDLSKHRRT   34 (38)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCCEecCCCCceeeCHHHHHHhCcc
Confidence            46679999999999999999999875

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.25  E-value=0.45  Score=34.47  Aligned_cols=62  Identities=3%  Similarity=0.099  Sum_probs=49.3

Q ss_pred             CCeEEeeecCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCceEEEEEEecCcccHHHHHHhhccccccC
Q psy4687          34 TSSIFLRNLAPTITKAEVENLCKRYSGFLRVAIADPQPDRRWFRRGWVTFRRDVDIKEICWNLNNIRLRD  103 (339)
Q Consensus        34 t~slfIk~IpP~isr~ele~~ck~~~GF~~lsLSDP~p~krf~R~GWV~f~~~~~~~~~~~~L~~~~i~d  103 (339)
                      .+.++|-.+||+.+ +++...+++++.-..+-+.   ..|+   -|.|.|+...++..|+ .+|+..+.+
T Consensus         4 ~~wV~V~G~p~~~~-~~il~~F~~~G~I~~~~~~---~~~~---~~fV~f~~~~~A~~Al-~~nG~~~~g   65 (81)
T d1wwha1           4 DTWVTVFGFPQASA-SYILLQFAQYGNILKHVMS---NTGN---WMHIRYQSKLQARKAL-SKDGRIFGE   65 (81)
T ss_dssp             GGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEEC---SSSS---EEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred             ccEEEEECCChHHH-HHHHHHHHhhhhhheEEec---CCCC---EEEEEEcccHHHHHHH-hcCCCeECC
Confidence            46789999999987 5666789999998888764   2234   5899999999999888 488877765

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.63  E-value=0.13  Score=31.28  Aligned_cols=23  Identities=13%  Similarity=0.379  Sum_probs=20.3

Q ss_pred             eecCCC--CcccccChhhHHhhhhh
Q psy4687         305 KWLCPL--SGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       305 K~rC~~--C~KlFk~~eFV~KHI~n  327 (339)
                      .|.|+.  |+|.|.-..-+..|++.
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~   26 (30)
T d2glia3           2 PHKCTFEGCRKSYSRLENLKTHLRS   26 (30)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHH
T ss_pred             CeeCCCCCCCceECChhHhhhhcCc
Confidence            489965  99999999999999864

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.01  E-value=0.1  Score=34.80  Aligned_cols=30  Identities=30%  Similarity=0.468  Sum_probs=25.3

Q ss_pred             hhhccCCeecCCC--CcccccChhhHHhhhhh
Q psy4687         298 TQEISTDKWLCPL--SGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       298 ~~e~~e~K~rC~~--C~KlFk~~eFV~KHI~n  327 (339)
                      +....+-.|.|+.  |+|.|....-+++|+++
T Consensus        11 ~~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~   42 (47)
T d1ncsa_          11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT   42 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHHHHH
T ss_pred             hhccCCCCeECCcCCCCccccCchHHHhhccc
Confidence            3345788999965  99999999999999875

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.10  E-value=0.14  Score=36.74  Aligned_cols=38  Identities=13%  Similarity=0.305  Sum_probs=32.6

Q ss_pred             cCCeecCCCCcccccChhhHHhhhhh-cchHHHHHhhcC
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIFN-KHAEKVEEVKKE  339 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~n-KH~e~v~~v~~e  339 (339)
                      ..+.|-|..|.|.|+...=+..|.+. ||-..|..++.+
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~~   50 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVE   50 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTSC
T ss_pred             CCCEEecccccCccCCHHHHHHHHcccHHHHHHHHhccC
Confidence            46779999999999999999999975 688888888753

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.78  E-value=0.17  Score=30.30  Aligned_cols=23  Identities=30%  Similarity=0.694  Sum_probs=19.9

Q ss_pred             eecCC--CCcccccChhhHHhhhhh
Q psy4687         305 KWLCP--LSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       305 K~rC~--~C~KlFk~~eFV~KHI~n  327 (339)
                      .|.|+  .|+|.|.-.+=+..|+++
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~   26 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILT   26 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHH
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhh
Confidence            48895  599999999999999864

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.19  E-value=0.18  Score=29.39  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=18.0

Q ss_pred             cCCCCcccccChhhHHhhhhh
Q psy4687         307 LCPLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       307 rC~~C~KlFk~~eFV~KHI~n  327 (339)
                      .||.|.|.|...-|+.=|-+.
T Consensus         2 qcp~c~k~f~skyylkvhnr~   22 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRK   22 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHH
T ss_pred             cCcchHHHHHHhHhhhhcccc
Confidence            599999999999998877554

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.76  E-value=0.23  Score=31.30  Aligned_cols=24  Identities=29%  Similarity=0.664  Sum_probs=21.0

Q ss_pred             ecCC--CCcccccChhhHHhhhhhcch
Q psy4687         306 WLCP--LSGKKFKGPDFIRKHIFNKHA  330 (339)
Q Consensus       306 ~rC~--~C~KlFk~~eFV~KHI~nKH~  330 (339)
                      |.|+  .|+|.|....-++.|+++ |.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~-Ht   27 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL-HS   27 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH-HH
T ss_pred             eECCCCCCCCeeCChhHhccccCe-eC
Confidence            7895  599999999999999987 54

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.12  E-value=0.3  Score=28.88  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=18.4

Q ss_pred             cC--CCCcccccChhhHHhhhhh
Q psy4687         307 LC--PLSGKKFKGPDFIRKHIFN  327 (339)
Q Consensus       307 rC--~~C~KlFk~~eFV~KHI~n  327 (339)
                      -|  +.|+|.|+...=.|||+-.
T Consensus         3 ~CphkgC~K~Frd~saMRKHlht   25 (28)
T d1ubdc1           3 ACPHKGCTKMFRDNSAMRKHLHT   25 (28)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHGG
T ss_pred             cCCcccHHHHhhchHHHHHHhhc
Confidence            47  4799999999999999865

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.54  E-value=0.31  Score=32.34  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=22.0

Q ss_pred             cCCeecCCCCcccccChhhHHhhhh
Q psy4687         302 STDKWLCPLSGKKFKGPDFIRKHIF  326 (339)
Q Consensus       302 ~e~K~rC~~C~KlFk~~eFV~KHI~  326 (339)
                      .+-.|.|+.|+|-|.....+..|++
T Consensus        27 ~ekpy~C~~C~k~F~~~~~L~~H~r   51 (53)
T d2csha1          27 GLRPYGCGVCGKKFKMKHHLVGHMK   51 (53)
T ss_dssp             CCCSEECTTTSCEESSSHHHHHHHT
T ss_pred             cccCCcCCCcCCEecCHHHHHHHHh
Confidence            3456999999999999999999975

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.16  E-value=0.35  Score=29.17  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=20.7

Q ss_pred             eecCC--CCcccccChhhHHhhhhhcc
Q psy4687         305 KWLCP--LSGKKFKGPDFIRKHIFNKH  329 (339)
Q Consensus       305 K~rC~--~C~KlFk~~eFV~KHI~nKH  329 (339)
                      .|.|+  .|+|.|.-..-+..|++. |
T Consensus         2 p~~C~~~gCgk~F~~~~~L~~H~r~-H   27 (30)
T d1ubdc3           2 PFQCTFEGCGKRFSLDFNLRTHVRI-H   27 (30)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHHH-H
T ss_pred             CccCCCCCCCceECcHHHcCccccc-c
Confidence            48895  599999999999999974 5