Psyllid ID: psy4702

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MNKVYLILFYCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGIIRRPGEGEEE
Secondary Structure (PSIPRED)
ccEEEHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEcccEEEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MNKVYLILFYCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQIlahpdvgvQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKgeeygiirrpgegeee
Flexible Loop (DISEMBL)
MNKVYLILFYCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQalakgeeygiirrpgegeee
Low Complexity Region (SEG)
MNKVYLILFYCSQVRFLFlltceedtetacaaagalamltSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKgeeygiirrpgegeee
Disordered region (IsUnstruct)
***VYLILFYCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGII*********
Disordered Region (DISOPRED)
**KVYLILFYCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLL***EVRKLALQALAKGEEY************
Disordered Region (DISEMBL)
MNKVYLILFYCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGIIRRPGEGEEE
Disordered Region (DISPRO)
MNKVYLILFYCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGIIRR*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNKVYLILFYCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGIIRRPGEGEEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q8CGY6	931	Protein unc-45 homolog B	yes	N/A	0.862	0.127	0.376	9e-15
Q8IWX7	931	Protein unc-45 homolog B	yes	N/A	0.862	0.127	0.36	8e-14
Q5RAP0	929	Protein unc-45 homolog A	yes	N/A	0.905	0.134	0.346	2e-13
Q9H3U1	944	Protein unc-45 homolog A	no	N/A	0.905	0.132	0.346	2e-13
Q32PZ3	944	Protein unc-45 homolog A	no	N/A	0.905	0.132	0.346	3e-13
Q99KD5	944	Protein unc-45 homolog A	no	N/A	0.905	0.132	0.346	5e-13
Q68F64	927	Protein unc-45 homolog B	N/A	N/A	0.826	0.122	0.352	1e-12
D7REX8	927	Protein unc-45 homolog B	no	N/A	0.862	0.128	0.333	8e-12
Q6DGE9	934	Protein unc-45 homolog B	yes	N/A	0.862	0.127	0.312	2e-11
O74994	746	Ring assembly protein 3 O	yes	N/A	0.630	0.116	0.318	0.0006

>sp|Q8CGY6|UN45B_MOUSE Protein unc-45 homolog B OS=Mus musculus GN=Unc45b PE=1 SV=1

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 6/125 (4%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE--KNWVDIFKQILAHPDVG 69
            +++ + LL  E+D +   AAAGALAMLT+    +C  + E    W++I +++  H  + 
Sbjct: 804 DRLKLVVLLCGEDDHKLQNAAAGALAMLTAAHKKLCLKMTEVTTQWLEILQRLCLHDQLS 863

Query: 70  VQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVR----KLALQALAKGEE 125
           VQHR LVI  N+LSA  ELA +++ +EL+EIL  +   E +E R    + A + L K  +
Sbjct: 864 VQHRGLVIAHNLLSADAELARKLVESELLEILTVVGKQEPDEKRAAVVQTARECLIKCMD 923

Query: 126 YGIIR 130
           YG I+
Sbjct: 924 YGFIK 928

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain. Plays a role in sarcomere formation during muscle cell development.
Mus musculus (taxid: 10090)

>sp|Q8IWX7|UN45B_HUMAN Protein unc-45 homolog B OS=Homo sapiens GN=UNC45B PE=2 SV=1

 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 75/125 (60%), Gaps = 6/125 (4%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE--KNWVDIFKQILAHPDVG 69
            +++ + LL  E+D +   AAAGALAMLT+    +C  + +    W++I +++  H  + 
Sbjct: 804 DRLKLVVLLCGEDDDKVQNAAAGALAMLTAAHKKLCLKMTQVTTQWLEILQRLCLHDQLS 863

Query: 70  VQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGE----EVRKLALQALAKGEE 125
           VQHR LVI  N+L+A  ELA++++ +EL+EIL  +   E +    EV + A + L K  +
Sbjct: 864 VQHRGLVIAYNLLAADAELAKKLVESELLEILTVVGKQEPDEKKAEVVQTARECLIKCMD 923

Query: 126 YGIIR 130
           YG I+
Sbjct: 924 YGFIK 928

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain. Plays a role in sarcomere formation during muscle cell development.

Homo sapiens (taxid: 9606)

>sp|Q5RAP0|UN45A_PONAB Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 2/127 (1%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE--KNWVDIFKQILAHPDVG 69
            +++ L L + E+D     AAAG LAMLTS+   +CS + +   +W++I + +L   +  
Sbjct: 803 DRLKLLVLYSGEDDELLQRAAAGGLAMLTSMRPTLCSRIPQVTTHWLEILQALLLSSNQE 862

Query: 70  VQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGII 129
           +QHR  V+V N++ A +E+A  ++ +E+MEIL  L   +   V + A   L K  EYG+I
Sbjct: 863 LQHRGAVVVLNMVEASREIASTLMESEMMEILSVLAKGDHSPVTRAAAACLDKAVEYGLI 922

Query: 130 RRPGEGE 136
           +   +GE
Sbjct: 923 QPNQDGE 929

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Pongo abelii (taxid: 9601)

>sp|Q9H3U1|UN45A_HUMAN Protein unc-45 homolog A OS=Homo sapiens GN=UNC45A PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 2/127 (1%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE--KNWVDIFKQILAHPDVG 69
            +++ L L + E+D     AAAG LAMLTS+   +CS + +   +W++I + +L   +  
Sbjct: 818 DRLKLLVLYSGEDDELLQRAAAGGLAMLTSMRPTLCSRIPQVTTHWLEILQALLLSSNQE 877

Query: 70  VQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGII 129
           +QHR  V+V N++ A +E+A  ++ +E+MEIL  L   +   V + A   L K  EYG+I
Sbjct: 878 LQHRGAVVVLNMVEASREIASTLMESEMMEILSVLAKGDHSPVTRAAAACLDKAVEYGLI 937

Query: 130 RRPGEGE 136
           +   +GE
Sbjct: 938 QPNQDGE 944

Acts as co-chaperone for HSP90. Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell. May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Homo sapiens (taxid: 9606)

>sp|Q32PZ3|UN45A_RAT Protein unc-45 homolog A OS=Rattus norvegicus GN=Unc45a PE=2 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 2/127 (1%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE--KNWVDIFKQILAHPDVG 69
            +++ L L + E+D     AAAG LAMLTS+   +CS + +   +W++I + +L  P+  
Sbjct: 818 DRLKLLVLYSGEDDELLRRAAAGGLAMLTSMRPSLCSRIPQVTTHWLEILQALLLSPNPE 877

Query: 70  VQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGII 129
           +QHR  V+V N++ + KE+A  ++ +E++EIL  L   E   V + A   L K  EY +I
Sbjct: 878 LQHRGTVVVLNMMESSKEIASTLMESEVLEILSVLAKGEESPVTRAAAACLEKAVEYRLI 937

Query: 130 RRPGEGE 136
           +   +GE
Sbjct: 938 QPNQDGE 944

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Rattus norvegicus (taxid: 10116)

>sp|Q99KD5|UN45A_MOUSE Protein unc-45 homolog A OS=Mus musculus GN=Unc45a PE=1 SV=2

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 2/127 (1%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE--KNWVDIFKQILAHPDVG 69
            +++ L L + E+D     AAAG LAMLTS+   +CS + +   +W++I + +L  P+  
Sbjct: 818 DRLKLLVLYSGEDDELLRRAAAGGLAMLTSMRPALCSRIPQVTTHWLEILQALLLSPNQE 877

Query: 70  VQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGII 129
           +QHR  V+V N++ + KE+A  ++ +E++EIL  L   E   V + A   L K  EY +I
Sbjct: 878 LQHRGTVVVLNMMQSSKEIAGTLMESEVLEILSVLAKGEESPVTRAAAACLEKAVEYRLI 937

Query: 130 RRPGEGE 136
           +   +GE
Sbjct: 938 QPNQDGE 944

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Mus musculus (taxid: 10090)

>sp|Q68F64|UN45B_XENLA Protein unc-45 homolog B OS=Xenopus laevis GN=unc45b PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 73/122 (59%), Gaps = 8/122 (6%)

Query: 17  LFLLTCEEDTETAC--AAAGALAMLTSVSTPVCSMLLE--KNWVDIFKQILAHPDVGVQH 72
           L +L C ED E     AAAG LA+LT+    +C  + E    W++I +++  + D+ VQH
Sbjct: 803 LIVLLCGEDEEVKLQRAAAGTLAILTAAEKKLCHKMTEVTSQWLEILQRLCLNEDLQVQH 862

Query: 73  RALVIVGNILSAGKELAERVLSTELMEILMAL----TLLEGEEVRKLALQALAKGEEYGI 128
           R +VI  N++SA KELA++++ +E++EIL  +     +   + +  +A +AL K  +YG 
Sbjct: 863 RGVVITYNLISAEKELAKKLVESEMLEILTVIGKQADVPNKQHIINVAREALVKCLDYGF 922

Query: 129 IR 130
           I+
Sbjct: 923 IK 924

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain. Plays a role in sarcomere formation during muscle cell assembly.

Xenopus laevis (taxid: 8355)

>sp|D7REX8|UN45B_XENTR Protein unc-45 homolog B OS=Xenopus tropicalis GN=unc45b PE=1 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 7/126 (5%)

Query: 12  SQVRFLFLLTCEED-TETACAAAGALAMLTSVSTPVCSMLLE--KNWVDIFKQILAHPDV 68
            +++ + LL  EED  +   AAAG LAMLT     +C  + E    W++I +++    D+
Sbjct: 799 DRLKLIILLCGEEDEVKLQRAAAGTLAMLTGAEKKLCHKMTEVTTQWMEILQRLCLSEDL 858

Query: 69  GVQHRALVIVGNILSAGKELAERVLSTELMEILMAL----TLLEGEEVRKLALQALAKGE 124
            VQHR +VI  N+++A KELA++++ +E++EIL  +     +   + +   A +AL K  
Sbjct: 859 QVQHRGVVIAYNLINADKELAKKLVESEMLEILTVIGKQADVPNKQHIINAAREALVKCL 918

Query: 125 EYGIIR 130
           +YG I+
Sbjct: 919 DYGFIK 924

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain (By similarity). Plays a role in sarcomere formation during muscle cell development.

Xenopus tropicalis (taxid: 8364)

>sp|Q6DGE9|UN45B_DANRE Protein unc-45 homolog B OS=Danio rerio GN=unc45b PE=1 SV=2

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 75/125 (60%), Gaps = 6/125 (4%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE--KNWVDIFKQILAHPDVG 69
            +++ L LL  E++ +   AAAGALAMLT+    +   + +  + W++I +++  H +  
Sbjct: 806 DKLKLLVLLCGEDEEKLQRAAAGALAMLTAAQKKLAVKMTKVTEQWLEILQRLCIHDNPE 865

Query: 70  VQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQA----LAKGEE 125
           +QHR LV V N+L A  +LA++++ ++++EIL  +  LE    ++ A+ A    L+K  +
Sbjct: 866 IQHRGLVTVFNMLDADDQLAKKLVESDMLEILTYVAKLEDNPKKQNAIDAARACLSKAMD 925

Query: 126 YGIIR 130
            G+I+
Sbjct: 926 NGLIK 930

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain (By similarity). Plays a role in sarcomere formation during muscle cell development. Required for myoseptal integrity, myofiber attachment, motility and craniofacial development.

Danio rerio (taxid: 7955)

>sp|O74994|RNG3_SCHPO Ring assembly protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rng3 PE=4 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 9   FYCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDV 68
           F  +++  +  L+  EDT T  AA G L  +TSV      +L  +N  +   ++L   D 
Sbjct: 623 FENTRLHIVLALSDTEDTPTRLAACGILVQITSVDEGCKKILSLQNDFNYIVRMLTDQDE 682

Query: 69  GVQHRALVIVGNIL-SAGKELAERVLST 95
           G+QHR LV + NI+ S  +E+  + + T
Sbjct: 683 GIQHRGLVCICNIVYSKDQEIFNKFIKT 710

Essential for actinomyosin ring assembly during cytokinesis. Has a role, in conjunction with F-actin, in assembling myosin II-containing proteins, such as myo2, at the division site.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
242001014	935	heat shock protein 70 (HSP70)-interactin	0.913	0.134	0.419	9e-22
195451276	949	GK13474 [Drosophila willistoni] gi|19416	0.905	0.131	0.441	2e-21
195111867	954	GI10261 [Drosophila mojavensis] gi|19391	0.905	0.131	0.441	4e-21
183979249	943	similar to CG2708-PA [Papilio xuthus]	0.898	0.131	0.445	5e-21
307188554	939	UNC45-like protein A [Camponotus florida	0.913	0.134	0.4	6e-21
242010879	944	heat shock protein 70 HSP70 interacting	0.869	0.127	0.446	1e-20
195498581	947	GE24964 [Drosophila yakuba] gi|194182685	0.905	0.131	0.418	2e-20
195153186	946	GL21482 [Drosophila persimilis] gi|19411	0.905	0.132	0.426	2e-20
125777358	946	GA15439 [Drosophila pseudoobscura pseudo	0.905	0.132	0.426	3e-20
195055231	948	GH17296 [Drosophila grimshawi] gi|193892	0.905	0.131	0.434	3e-20

>gi|242001014|ref|XP_002435150.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ixodes scapularis] gi|215498480|gb|EEC07974.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ixodes scapularis]

 Score =  108 bits (269), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 93/131 (70%), Gaps = 5/131 (3%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGV 70
            +V++L L   +ED +T+ AAAGALAMLTSVS   C  ++E K+WV+IF  + AH D  +
Sbjct: 796 DRVKYLTLCLEDEDYDTSQAAAGALAMLTSVSDVACQKVVEVKDWVEIFGGLAAHKDEAL 855

Query: 71  QHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEG----EEVRKLALQALAKGEEY 126
           QHR + I+ N++ + +++AER++ + L+E+L+A+T +EG    ++VRKLA + L+K E++
Sbjct: 856 QHRGVCILHNLVHSKRDVAERLVGSSLLEVLLAVTQVEGAAASDKVRKLAQETLSKAEQW 915

Query: 127 GIIRRPGEGEE 137
            +I++  E +E
Sbjct: 916 KLIQKSSEQDE 926

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195451276|ref|XP_002072843.1| GK13474 [Drosophila willistoni] gi|194168928|gb|EDW83829.1| GK13474 [Drosophila willistoni]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 85/129 (65%), Gaps = 4/129 (3%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGV 70
            +V+FL LL  +ED ETA A AGALA+LTSVS   C  +L   +W+D+   ++A+P   V
Sbjct: 803 DRVKFLALLCEDEDEETAMACAGALAILTSVSAKCCKKILAIASWLDVLHTLIANPSPAV 862

Query: 71  QHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGE---EVRKLALQALAKGEEYG 127
           QHR +V++ NI++AG+E A+++  T++ME+L  L  L  E   + R++A+Q LA  E+Y 
Sbjct: 863 QHRGIVVILNIINAGEEFAKKLFDTDIMELLSGLGQLPDETRSKAREVAIQCLAAAEKYR 922

Query: 128 IIRRPGEGE 136
           II R  E E
Sbjct: 923 IIERSDEAE 931

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195111867|ref|XP_002000498.1| GI10261 [Drosophila mojavensis] gi|193917092|gb|EDW15959.1| GI10261 [Drosophila mojavensis]

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 86/129 (66%), Gaps = 4/129 (3%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGV 70
            +V+FL LL  +ED +TA A AGALAMLTSVST  C+ +L   +W++I   ++A+P   V
Sbjct: 808 DRVKFLALLCEDEDEDTAKACAGALAMLTSVSTKCCAKILNISSWLNILHTLIANPSPDV 867

Query: 71  QHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEE---VRKLALQALAKGEEYG 127
           QHR +V++ N+++AG E+A+++  T++ME+L  L+ L GEE    R++A Q LA  E   
Sbjct: 868 QHRGVVVILNMINAGPEIAKKLFETDIMELLSGLSQLPGEERAKAREVATQCLAAAERQR 927

Query: 128 IIRRPGEGE 136
           II R  + E
Sbjct: 928 IIERSEDAE 936

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|183979249|dbj|BAG30786.1| similar to CG2708-PA [Papilio xuthus]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/128 (44%), Positives = 84/128 (65%), Gaps = 4/128 (3%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGV 70
            + +FL+LL  EED +T  AAAGAL +LTSVS   C  LL+ + W++  + +LA+P+  +
Sbjct: 798 DKCKFLYLLCQEEDMDTVMAAAGALCILTSVSKSCCRKLLDCQAWLESLRVLLANPNKEI 857

Query: 71  QHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRK---LALQALAKGEEYG 127
           Q+R   ++ NI+S  K++A R+  T++MEILMALT LE  EV+K   LA + L   E  G
Sbjct: 858 QYRGTYMLYNIISGDKDIAVRIFETDVMEILMALTKLEDPEVKKTVELAQKCLDAAESMG 917

Query: 128 IIRRPGEG 135
           +IR+P E 
Sbjct: 918 LIRKPDEN 925

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188554|gb|EFN73289.1| UNC45-like protein A [Camponotus floridanus]

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 91/130 (70%), Gaps = 4/130 (3%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGV 70
            ++++L +L  +ED +T+ AAAGALAMLTSVS   C  + + KNW++  + +LA+P+  V
Sbjct: 798 DRIKYLVILCEDEDQDTSIAAAGALAMLTSVSKKACEKIFDSKNWLESLRFLLANPNCDV 857

Query: 71  QHRALVIVGNILSAGKELAERVLSTELMEILMALT---LLEGEEVRKLALQALAKGEEYG 127
           QHR +VIV N++ + K++A +++ T++MEILMAL+   ++E +++R+LA  AL    E+ 
Sbjct: 858 QHRGVVIVLNMIRSTKDVAAKLIETDIMEILMALSKNDMVENKQIRELASTALDAAAEWN 917

Query: 128 IIRRPGEGEE 137
           +I++  +  E
Sbjct: 918 LIKKNVDENE 927

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010879|ref|XP_002426185.1| heat shock protein 70 HSP70 interacting protein, putative [Pediculus humanus corporis] gi|212510236|gb|EEB13447.1| heat shock protein 70 HSP70 interacting protein, putative [Pediculus humanus corporis]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 80/121 (66%), Gaps = 1/121 (0%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGV 70
            + ++LFLL  EED ET  AA+GALAMLTSVS   C  L    NW++IF+ +L++ +  +
Sbjct: 802 DKTKYLFLLCFEEDLETVEAASGALAMLTSVSKICCKKLFNVTNWLEIFQYLLSNQNSAI 861

Query: 71  QHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGIIR 130
           QHR L IV NI     ELA++++ T +M++LMALT L   +++ LA +AL   EE  +I+
Sbjct: 862 QHRGLAIVMNIFKHDIELAKKLIETNVMDVLMALTKLNDTKIKDLANEALKMAEELKLIK 921

Query: 131 R 131
           +
Sbjct: 922 K 922

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195498581|ref|XP_002096584.1| GE24964 [Drosophila yakuba] gi|194182685|gb|EDW96296.1| GE24964 [Drosophila yakuba]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 85/129 (65%), Gaps = 4/129 (3%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGV 70
            +V+FL LL  +ED ETA A AGALA++TSVS   C  +L   +W+DI   ++A+P   V
Sbjct: 802 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAITSWLDILHTLIANPSPAV 861

Query: 71  QHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGE---EVRKLALQALAKGEEYG 127
           QHR +V++ N+++AG+E+A+++  T++ME+L  L  L  +   + R++A+Q LA  E Y 
Sbjct: 862 QHRGIVVILNMINAGEEIAKKLFDTDIMELLSGLGQLPDDTRAKAREVAIQCLAAAERYR 921

Query: 128 IIRRPGEGE 136
           II R  + E
Sbjct: 922 IIERSDDAE 930

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195153186|ref|XP_002017510.1| GL21482 [Drosophila persimilis] gi|194112567|gb|EDW34610.1| GL21482 [Drosophila persimilis]

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 83/129 (64%), Gaps = 4/129 (3%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGV 70
            +V+FL LL  +ED ETA A AGALAMLTSVS   C  +    +W+D+   ++A+P   V
Sbjct: 801 DRVKFLALLCEDEDEETAMACAGALAMLTSVSEKCCEKIFAVSSWLDVLHTLIANPSPAV 860

Query: 71  QHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGE---EVRKLALQALAKGEEYG 127
           QHR +VI+ N++++G+E A+++  T++ME+L  L  L  E   + R++A+Q LA  E Y 
Sbjct: 861 QHRGIVIILNMINSGEETAKKLFQTDIMELLSGLGQLPDESRAKAREVAIQCLAAAERYR 920

Query: 128 IIRRPGEGE 136
           II R  + E
Sbjct: 921 IIERSDDAE 929

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125777358|ref|XP_001359581.1| GA15439 [Drosophila pseudoobscura pseudoobscura] gi|54639329|gb|EAL28731.1| GA15439 [Drosophila pseudoobscura pseudoobscura]

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 83/129 (64%), Gaps = 4/129 (3%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGV 70
            +V+FL LL  +ED ETA A AGALAMLTSVS   C  +    +W+D+   ++A+P   V
Sbjct: 801 DRVKFLALLCEDEDEETAMACAGALAMLTSVSEKCCEKIFAVSSWLDVLHTLIANPSPAV 860

Query: 71  QHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGE---EVRKLALQALAKGEEYG 127
           QHR +VI+ N++++G+E A+++  T++ME+L  L  L  E   + R++A+Q LA  E Y 
Sbjct: 861 QHRGIVIILNMINSGEETAKKLFQTDIMELLSGLGQLPDESRAKAREVAIQCLAAAERYR 920

Query: 128 IIRRPGEGE 136
           II R  + E
Sbjct: 921 IIERSDDAE 929

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195055231|ref|XP_001994523.1| GH17296 [Drosophila grimshawi] gi|193892286|gb|EDV91152.1| GH17296 [Drosophila grimshawi]

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/129 (43%), Positives = 86/129 (66%), Gaps = 4/129 (3%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGV 70
            +V+FL LL  +ED ETA A AGALAMLTSVST  C+ +L  ++W+ I + ++A+P   V
Sbjct: 804 DRVKFLALLCEDEDEETATACAGALAMLTSVSTKCCAKILAIESWLTILQTLIANPSPAV 863

Query: 71  QHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGE---EVRKLALQALAKGEEYG 127
           QHR +V++ N+++AG E+A  +L T++ME+L  L+ L  +   + R++A+Q LA  E   
Sbjct: 864 QHRGVVVILNMINAGTEIATNLLQTDIMELLSGLSQLADDTRAKAREVAIQCLAAAERNR 923

Query: 128 IIRRPGEGE 136
           II R  + E
Sbjct: 924 IIERSDDAE 932

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
FB|FBgn0010812	947	unc-45 [Drosophila melanogaste	0.586	0.085	0.376	7.8e-10
RGD|1305666	735	Unc45b "unc-45 homolog B (C. e	0.528	0.099	0.386	3.7e-08
MGI|MGI:2443377	931	Unc45b "unc-45 homolog B (C. e	0.528	0.078	0.373	1.7e-07
UNIPROTKB|F1NXC5	953	UNC45B "Uncharacterized protei	0.405	0.058	0.431	2.3e-07
UNIPROTKB|F1MFZ5	931	UNC45B "Uncharacterized protei	0.528	0.078	0.36	5.8e-07
UNIPROTKB|F1S166	929	UNC45B "Uncharacterized protei	0.463	0.068	0.375	1.6e-06
UNIPROTKB|Q8IWX7	931	UNC45B "Protein unc-45 homolog	0.463	0.068	0.375	1.6e-06
ZFIN|ZDB-GENE-050417-158	935	unc45a "unc-45 homolog A (C. e	0.485	0.071	0.371	2e-06
UNIPROTKB|F1PUV3	943	UNC45B "Uncharacterized protei	0.463	0.067	0.375	2.6e-06
RGD|1305357	944	Unc45a "unc-45 homolog A (C. e	0.594	0.086	0.309	3.3e-06

FB|FBgn0010812 unc-45 [Drosophila melanogaster (taxid:7227)]

 Score = 154 (59.3 bits), Expect = 7.8e-10, P = 7.8e-10
 Identities = 32/85 (37%), Positives = 55/85 (64%)

Query:    41 SVSTPVCSMLLE-KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELME 99
             SVS   C  +L   +W+DI   ++A+P   VQHR +VI+ N+++AG+E+A+++  T++ME
Sbjct:   831 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIME 890

Query:   100 ILMALTLLEGE---EVRKLALQALA 121
             +L  L  L  +   + R++A Q LA
Sbjct:   891 LLSGLGQLPDDTRAKAREVATQCLA 915

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0034605 "cellular response to heat" evidence=IDA

GO:0007525 "somatic muscle development" evidence=IMP

GO:0031034 "myosin filament assembly" evidence=IMP

RGD|1305666 Unc45b "unc-45 homolog B (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 137 (53.3 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 29/75 (38%), Positives = 45/75 (60%)

Query:    46 VCSMLLE--KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMA 103
             +C  + E    W++I +++  H  + VQHR LVI  N+LSA  ELA +++ TEL+EIL  
Sbjct:   642 LCLKMTEVTTQWLEILQRLCLHDQLSVQHRGLVIAYNLLSADAELARKLVETELLEILTV 701

Query:   104 LTLLEGEEVRKLALQ 118
             +   E +E R   +Q
Sbjct:   702 VGKQEPDETRAAVVQ 716

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0051879 "Hsp90 protein binding" evidence=IEA;ISO

GO:0061077 "chaperone-mediated protein folding" evidence=IEA;ISO

MGI|MGI:2443377 Unc45b "unc-45 homolog B (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 132 (51.5 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 28/75 (37%), Positives = 45/75 (60%)

Query:    46 VCSMLLE--KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMA 103
             +C  + E    W++I +++  H  + VQHR LVI  N+LSA  ELA +++ +EL+EIL  
Sbjct:   838 LCLKMTEVTTQWLEILQRLCLHDQLSVQHRGLVIAHNLLSADAELARKLVESELLEILTV 897

Query:   104 LTLLEGEEVRKLALQ 118
             +   E +E R   +Q
Sbjct:   898 VGKQEPDEKRAAVVQ 912

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

UNIPROTKB|F1NXC5 UNC45B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 131 (51.2 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 25/58 (43%), Positives = 42/58 (72%)

Query:    46 VCSMLLE--KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEIL 101
             +CS + E    W++I +++  H ++ VQHR LVI  N++SA KELA++++ +EL+EIL
Sbjct:   858 LCSKMTEVTTQWLEILQRLCLHDNMEVQHRGLVIAFNLISASKELAKKLVESELLEIL 915

GO:0005829 "cytosol" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

UNIPROTKB|F1MFZ5 UNC45B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 127 (49.8 bits), Expect = 5.8e-07, P = 5.8e-07
 Identities = 27/75 (36%), Positives = 46/75 (61%)

Query:    46 VCSMLLE--KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMA 103
             +C  + E    W++I +++  H  + VQHR LVI  N+L+A  ELA++++ +EL+EIL  
Sbjct:   838 LCFKMTEVTTQWLEILQRLCLHDRLSVQHRGLVIAYNLLAADAELAKKLVESELLEILTV 897

Query:   104 LTLLEGEEVRKLALQ 118
             +   E +E R   +Q
Sbjct:   898 VGKQEPDEKRAAVVQ 912

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|F1S166 UNC45B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 123 (48.4 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 24/64 (37%), Positives = 42/64 (65%)

Query:    55 WVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRK 114
             W++I +++  H  + VQHR LVI  N+L+A  ELA++++ +EL+EIL  +   E +E + 
Sbjct:   847 WLEILQRLCLHDRLSVQHRGLVIAYNLLAADAELAKKLVESELLEILTVVGKQEPDEKKA 906

Query:   115 LALQ 118
               +Q
Sbjct:   907 AVVQ 910

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|Q8IWX7 UNC45B "Protein unc-45 homolog B" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 24/64 (37%), Positives = 42/64 (65%)

Query:    55 WVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRK 114
             W++I +++  H  + VQHR LVI  N+L+A  ELA++++ +EL+EIL  +   E +E + 
Sbjct:   849 WLEILQRLCLHDQLSVQHRGLVIAYNLLAADAELAKKLVESELLEILTVVGKQEPDEKKA 908

Query:   115 LALQ 118
               +Q
Sbjct:   909 EVVQ 912

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

ZFIN|ZDB-GENE-050417-158 unc45a "unc-45 homolog A (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 115 (45.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
 Identities = 26/70 (37%), Positives = 43/70 (61%)

Query:    54 NWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEE-- 111
             +W++I + +L      ++HR +VIV NI+ A K LAE+++ +E +EIL  LT  +  +  
Sbjct:   845 HWLEILQALLLSESQDLRHRGVVIVMNIMQADKSLAEKLMESEALEILSVLTKTDDPKQA 904

Query:   112 -VRKLALQAL 120
              VRK A + L
Sbjct:   905 SVRKAAQRCL 914

GO:0005575 "cellular_component" evidence=ND

GO:0008015 "blood circulation" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

GO:0048514 "blood vessel morphogenesis" evidence=IMP

GO:0051216 "cartilage development" evidence=IMP

UNIPROTKB|F1PUV3 UNC45B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 121 (47.7 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 24/64 (37%), Positives = 42/64 (65%)

Query:    55 WVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRK 114
             W++I +++  H  + VQHR LVI  N+L+A  ELA++++ +EL+EIL  +   E +E + 
Sbjct:   847 WLEILQRLCLHDRLSVQHRGLVIAYNLLAADAELAKKLVESELLEILTVVGKQEPDEKKA 906

Query:   115 LALQ 118
               +Q
Sbjct:   907 EVVQ 910

GO:0061077 "chaperone-mediated protein folding" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

RGD|1305357 Unc45a "unc-45 homolog A (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 120 (47.3 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:    41 SVSTPVCSML--LEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELM 98
             S+   +CS +  +  +W++I + +L  P+  +QHR  V+V N++ + KE+A  ++ +E++
Sbjct:   847 SMRPSLCSRIPQVTTHWLEILQALLLSPNPELQHRGTVVVLNMMESSKEIASTLMESEVL 906

Query:    99 EILMALTLLEGEEVRKLALQALAK 122
             EIL  L   E   V + A   L K
Sbjct:   907 EILSVLAKGEESPVTRAAAACLEK 930

GO:0005634 "nucleus" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA;ISO

GO:0061077 "chaperone-mediated protein folding" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	138
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-06

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.9 bits (99), Expect = 8e-06
 Identities = 23/97 (23%), Positives = 42/97 (43%)

Query: 25  DTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSA 84
           D      AA AL+ L++ +      ++E   +    Q+L   D  V   AL  + N+ + 
Sbjct: 20  DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79

Query: 85  GKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
            ++    VL    +  L+ L     E+++K A  AL+
Sbjct: 80  PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALS 116

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
KOG4151|consensus	748		99.82
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.58
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.16
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	96.93
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	96.62
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	96.41
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	94.91
KOG0166|consensus	514		94.71
KOG4224|consensus	550		94.63
KOG1048|consensus	717		94.35
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.33
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	92.96
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	92.17
PRK09687	280	putative lyase; Provisional	91.81
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	91.18
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	90.84
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	90.72
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	90.63
KOG0166|consensus	514		90.4
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	90.01
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	88.44
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	87.93
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	87.74
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	86.79
KOG4500|consensus	604		86.01
KOG4224|consensus	550		85.84
KOG1048|consensus	717		85.7
PF05804	708	KAP: Kinesin-associated protein (KAP)	85.61
KOG4199|consensus	461		84.27
KOG2160|consensus	342		83.03
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	82.69
PRK09687	280	putative lyase; Provisional	82.44
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	82.37
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	81.91
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	81.86
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	81.03
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	80.77

>KOG4151|consensus

Probab=99.82  E-value=8.6e-21  Score=174.74  Aligned_cols=125  Identities=36%  Similarity=0.519  Sum_probs=118.5

Q ss_pred             ccCCChhhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh-ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcCh
Q psy4702           8 LFYCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGK   86 (138)
Q Consensus         8 ~~~n~RlklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~-~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~   86 (138)
                      ..+|+|+|+|.++++++|+++++|++||+|+.|++++.+|.++.. .+|.+++..+..|+++++||||+||+.||+.++.
T Consensus       623 ~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~  702 (748)
T KOG4151|consen  623 VEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALF  702 (748)
T ss_pred             hccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHH
Confidence            345999999999999999999999999999888889999999777 9999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCccCC
Q psy4702          87 ELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGIIRRP  132 (138)
Q Consensus        87 e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~~glIk~~  132 (138)
                      ++++++++++.+++|....|.++.+..+.+..||.++.+||||+|+
T Consensus       703 ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~~a~~~~~~~~~  748 (748)
T KOG4151|consen  703 EIAEKIFETEVMELLSGLQKLNRAPKREDAAPCLSAAEEYGLIKPK  748 (748)
T ss_pred             HHHHHhccchHHHHHHHHHHhhhhhhhhhhhhHHHHHHHhhccCCC
Confidence            9999999999999999999995558899999999999999999985

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.58  E-value=6.2e-07  Score=61.31  Aligned_cols=111  Identities=23%  Similarity=0.159  Sum_probs=95.8

Q ss_pred             hhhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHH
Q psy4702          13 QVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERV   92 (138)
Q Consensus        13 RlklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl   92 (138)
                      =++.++-+....|...+..|..+|+.++..+|..+..+++...++.+..+..++++.++...+-++.|+.....+..+++
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   87 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV   87 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            35556666677788999999999999999668889888887899999999999999999999999999998888888999


Q ss_pred             hhhhHHHHHHHhhccccHHHHHHHHHHHHHH
Q psy4702          93 LSTELMEILMALTLLEGEEVRKLALQALAKG  123 (138)
Q Consensus        93 ~es~~leiL~~~~k~~~~~v~~~a~eaLk~~  123 (138)
                      .+.|++..|..+....+.++.+.+..+|.-+
T Consensus        88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l  118 (120)
T cd00020          88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNL  118 (120)
T ss_pred             HHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            9999999999998776557788887777654

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=97.16  E-value=0.0036  Score=55.88  Aligned_cols=121  Identities=22%  Similarity=0.204  Sum_probs=97.5

Q ss_pred             cCCChhhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHH
Q psy4702           9 FYCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKEL   88 (138)
Q Consensus         9 ~~n~RlklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~   88 (138)
                      .+++=+..++-+-..+|...+.+|+.+|..|.+ ++..+..++++..+.-|..++.++++.+|+|..=++-++...+.+.
T Consensus       116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence            344555666666677899999999999999998 7888888989667999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHhhccccHHHHHHH----------HHHHHHHHhCCCcc
Q psy4702          89 AERVLSTELMEILMALTLLEGEEVRKLA----------LQALAKGEEYGIIR  130 (138)
Q Consensus        89 a~kl~es~~leiL~~~~k~~~~~v~~~a----------~eaLk~~~~~glIk  130 (138)
                      ++.+.++|+++.+....+.++--+.-.+          ...++-+++.|+++
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~  246 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFD  246 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHH
Confidence            9999999999999998888652222233          33455556666664

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=96.93  E-value=0.004  Score=42.28  Aligned_cols=74  Identities=24%  Similarity=0.204  Sum_probs=64.1

Q ss_pred             ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHhC
Q psy4702          53 KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus        53 ~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      ...++.|..++.++++.+++.++.++.|+...+.+....+++.++++.|..+...+..+++..+..+|.-+...
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG   79 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence            45788899999999999999999999999988888999999999999999998765448888888888777544

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=96.62  E-value=0.011  Score=61.24  Aligned_cols=112  Identities=13%  Similarity=0.061  Sum_probs=95.2

Q ss_pred             CChhhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHH
Q psy4702          11 CSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAE   90 (138)
Q Consensus        11 n~RlklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~   90 (138)
                      .+=.|+|+-|-...|.+.+..|..+|..|+...+..++.|.+..+++.|..++.++++.+|.-++..++|+...+.+...
T Consensus       403 ~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~  482 (2102)
T PLN03200        403 AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW  482 (2102)
T ss_pred             ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            34457777777788899999999999999975688888888877999999999999999999999999999887778788


Q ss_pred             HHhhhhHHHHHHHhhccccHHHHHHHHHHHHH
Q psy4702          91 RVLSTELMEILMALTLLEGEEVRKLALQALAK  122 (138)
Q Consensus        91 kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~  122 (138)
                      .+++.|++..|..+...++.++++.|.-+|--
T Consensus       483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~N  514 (2102)
T PLN03200        483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWN  514 (2102)
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            89999999999999976544777777766653

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=96.41  E-value=0.023  Score=58.95  Aligned_cols=112  Identities=17%  Similarity=0.127  Sum_probs=92.5

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      +..|+-|-..++...++.|..++..||..++.....|.+...++.|..|+.++++.+|...+.++.|+...+.++...+.
T Consensus       448 Ip~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~  527 (2102)
T PLN03200        448 VQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVE  527 (2102)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            33455445556788999999999999875778888999977999999999999999999999999999887777766666


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHHHHHh
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALAKGEE  125 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~  125 (138)
                      +.|++.-|..+.+..+.++++.|..+|..+..
T Consensus       528 ~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~  559 (2102)
T PLN03200        528 SAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR  559 (2102)
T ss_pred             HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence            88999999999877655777888888877753

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=94.91  E-value=0.097  Score=34.43  Aligned_cols=80  Identities=28%  Similarity=0.304  Sum_probs=59.5

Q ss_pred             hhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHH
Q psy4702          19 LLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELM   98 (138)
Q Consensus        19 ll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~l   98 (138)
                      .|..++|+..|..|.=+|+-+=  +         ++-++.|..++.|+++.+|+..+..+.++=           ..+.+
T Consensus         7 ~l~~~~~~~vr~~a~~~L~~~~--~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------~~~~~   64 (88)
T PF13646_consen    7 LLQNDPDPQVRAEAARALGELG--D---------PEAIPALIELLKDEDPMVRRAAARALGRIG-----------DPEAI   64 (88)
T ss_dssp             HHHTSSSHHHHHHHHHHHHCCT--H---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------HHHTH
T ss_pred             HHhcCCCHHHHHHHHHHHHHcC--C---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CHHHH
Confidence            3447888999988777777321  1         356888888999999999999988888771           34578


Q ss_pred             HHHHHhhccccH-HHHHHHHHHH
Q psy4702          99 EILMALTLLEGE-EVRKLALQAL  120 (138)
Q Consensus        99 eiL~~~~k~~~~-~v~~~a~eaL  120 (138)
                      +.|..+.+.+++ .|...|.++|
T Consensus        65 ~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   65 PALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcHHHHHHHHhhc
Confidence            888888877655 6678888876

>KOG0166|consensus

Probab=94.71  E-value=0.2  Score=46.02  Aligned_cols=104  Identities=25%  Similarity=0.290  Sum_probs=89.0

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      |..|.-|-...|+....-|.=|++.||.-++.....+++...+.-|..|+.|+++.++-=++-.+.|++.++.+-..-++
T Consensus       239 Lp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi  318 (514)
T KOG0166|consen  239 LPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVI  318 (514)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHH
Confidence            34556666778999999999999999965788888888877899999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhhccccH-HHHHHHH
Q psy4702          94 STELMEILMALTLLEGE-EVRKLAL  117 (138)
Q Consensus        94 es~~leiL~~~~k~~~~-~v~~~a~  117 (138)
                      ..|++..|+.+...+.+ .+.+.|.
T Consensus       319 ~~~~L~~l~~ll~~s~~~~ikkEAc  343 (514)
T KOG0166|consen  319 NSGALPVLSNLLSSSPKESIKKEAC  343 (514)
T ss_pred             hcChHHHHHHHhccCcchhHHHHHH
Confidence            99999999999987654 4555443

>KOG4224|consensus

Probab=94.63  E-value=0.14  Score=46.34  Aligned_cols=117  Identities=23%  Similarity=0.219  Sum_probs=87.3

Q ss_pred             eeeccCCChhhh--------hhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhh
Q psy4702           5 YLILFYCSQVRF--------LFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALV   76 (138)
Q Consensus         5 ~~~~~~n~Rlkl--------Lvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~v   76 (138)
                      ||.-++..|.|+        +.=|+-.+|-..++-|.|||--+|. +..-=+-++...++.+|..++.+.|+++|||...
T Consensus       152 nLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyyctt  230 (550)
T KOG4224|consen  152 NLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTT  230 (550)
T ss_pred             hhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHH
Confidence            344455566554        4557888999999999999999998 4555444555889999999999999999999999


Q ss_pred             hhhhhhhcChHHHHHHhhhh--HHHHHHHhhccccHHHHHHHHHHHHHH
Q psy4702          77 IVGNILSAGKELAERVLSTE--LMEILMALTLLEGEEVRKLALQALAKG  123 (138)
Q Consensus        77 iv~Nmi~a~~e~a~kl~es~--~leiL~~~~k~~~~~v~~~a~eaLk~~  123 (138)
                      -+.|+.-. .---+++.++|  ++..|..+-..++.+|.=.|--||.-+
T Consensus       231 aisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnl  278 (550)
T KOG4224|consen  231 AISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNL  278 (550)
T ss_pred             Hhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhh
Confidence            99998532 23346788888  888888887665446555555555544

>KOG1048|consensus

Probab=94.35  E-value=0.12  Score=49.08  Aligned_cols=109  Identities=22%  Similarity=0.164  Sum_probs=80.2

Q ss_pred             hhhhcCCCCHHHHHhhhhhhhhhcc----CCHHHHhhhhh-ccHHHHHHHHhcCCCcccchhhhhhh-------------
Q psy4702          17 LFLLTCEEDTETACAAAGALAMLTS----VSTPVCSMLLE-KNWVDIFKQILAHPDVGVQHRALVIV-------------   78 (138)
Q Consensus        17 Lvll~~eED~~tr~AA~GALAmLT~----~~~~~c~~I~~-~~wleil~~L~~~~~~~lqHRG~viv-------------   78 (138)
                      |.++...-...|.-|++|||=.||.    ++..+|..++. ++++.+|..|+..+++.+..=+.-.+             
T Consensus       524 l~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~li  603 (717)
T KOG1048|consen  524 LLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELI  603 (717)
T ss_pred             HHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhh
Confidence            6677766666799999999999997    34578888867 99999999999888777655444444             


Q ss_pred             ---------------------------------hhhhhcChHHHHHHhhhhHHHHHHHhhccccH-HHHHHHHHHHHHHH
Q psy4702          79 ---------------------------------GNILSAGKELAERVLSTELMEILMALTLLEGE-EVRKLALQALAKGE  124 (138)
Q Consensus        79 ---------------------------------~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~-~v~~~a~eaLk~~~  124 (138)
                                                       .||+..+-+.|+.+.+.++++-|+.+.|.... ++.+.|-.-|.-+-
T Consensus       604 gk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW  683 (717)
T KOG1048|consen  604 GKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLW  683 (717)
T ss_pred             hcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence                                             44554555566778888888888888887554 77777766555444


Q ss_pred             h
Q psy4702         125 E  125 (138)
Q Consensus       125 ~  125 (138)
                      .
T Consensus       684 ~  684 (717)
T KOG1048|consen  684 Q  684 (717)
T ss_pred             H
Confidence            3

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.33  E-value=0.16  Score=39.15  Aligned_cols=90  Identities=20%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             HHHHHhhhhhhhhhccCCHHHHhhhhh--ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHH
Q psy4702          26 TETACAAAGALAMLTSVSTPVCSMLLE--KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMA  103 (138)
Q Consensus        26 ~~tr~AA~GALAmLT~~~~~~c~~I~~--~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~  103 (138)
                      +..|.-+--+++-       .|.+-+.  .+|.+.+...+.|+++.+|...+.++.+++..+   --|+...-+.+++..
T Consensus         2 ~~vR~n~i~~l~D-------L~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~ik~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGD-------LCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED---MIKVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHH-------HHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ceeehhhhhHHHHHH
Confidence            4445544444443       4445555  679999999999999999999999999998764   234444444677765


Q ss_pred             hhccccHHHHHHHHHHHHHHHhC
Q psy4702         104 LTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus       104 ~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      + ..+.++|.+.|..++......
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHh
Confidence            5 333338999999988766543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=92.96  E-value=0.65  Score=38.55  Aligned_cols=69  Identities=20%  Similarity=0.238  Sum_probs=57.8

Q ss_pred             hhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh-ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcC
Q psy4702          15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGVQHRALVIVGNILSAG   85 (138)
Q Consensus        15 klLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~-~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~   85 (138)
                      +++-+|-..+|+..+..|-.+++..++ ++ ..+.++. -.++.++..++.+|++.++=+++-.+.||-...
T Consensus        16 ~Ll~lL~~t~dp~i~e~al~al~n~aa-f~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~   85 (254)
T PF04826_consen   16 KLLCLLESTEDPFIQEKALIALGNSAA-FP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND   85 (254)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhcc-Ch-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Confidence            344555667999999999999999987 56 6666666 889999999999999999999999999995543

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=92.17  E-value=0.27  Score=36.07  Aligned_cols=56  Identities=13%  Similarity=0.076  Sum_probs=47.1

Q ss_pred             hhhhhhccCCHHHHhhhhhccHHHHHHHHhcC--CCcccchhhhhhhhhhhhcChHHH
Q psy4702          34 GALAMLTSVSTPVCSMLLEKNWVDIFKQILAH--PDVGVQHRALVIVGNILSAGKELA   89 (138)
Q Consensus        34 GALAmLT~~~~~~c~~I~~~~wleil~~L~~~--~~~~lqHRG~viv~Nmi~a~~e~a   89 (138)
                      -.+|.||.-++.++..+.+-.+++.++.-|.-  .||-++-++++++||+.....+.-
T Consensus         8 rlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ   65 (102)
T PF09759_consen    8 RLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQ   65 (102)
T ss_pred             HHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHH
Confidence            35788888889999999996689999998864  688899999999999998876543

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PRK09687 putative lyase; Provisional

Probab=91.81  E-value=0.49  Score=39.45  Aligned_cols=99  Identities=18%  Similarity=0.164  Sum_probs=58.9

Q ss_pred             hhhhhhh-cCCCCHHHHHhhhhhhhhhccCC----H---------------HH----Hhhhhh---ccHHHHHHHHhcCC
Q psy4702          14 VRFLFLL-TCEEDTETACAAAGALAMLTSVS----T---------------PV----CSMLLE---KNWVDIFKQILAHP   66 (138)
Q Consensus        14 lklLvll-~~eED~~tr~AA~GALAmLT~~~----~---------------~~----c~~I~~---~~wleil~~L~~~~   66 (138)
                      +.+|..+ ..+.|...|.+|.++|.-+.+..    +               .+    +..+-.   +.-++.|..++.|+
T Consensus        92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~  171 (280)
T PRK09687         92 FNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDP  171 (280)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCC
Confidence            5566544 67788888989999988773200    1               11    111111   56678888888899


Q ss_pred             CcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHH
Q psy4702          67 DVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA  121 (138)
Q Consensus        67 ~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk  121 (138)
                      +++++|..+..+.++=..+.+         ..+.|....+.....|...|..+|.
T Consensus       172 ~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg  217 (280)
T PRK09687        172 NGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLA  217 (280)
T ss_pred             CHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHH
Confidence            999999988888887222222         2333444433322255555555554

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=91.18  E-value=0.3  Score=28.86  Aligned_cols=40  Identities=28%  Similarity=0.316  Sum_probs=35.5

Q ss_pred             CHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhh
Q psy4702          43 STPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNIL   82 (138)
Q Consensus        43 ~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi   82 (138)
                      ++.-+..|++..+++.|..|+.++++++|.-.+-.++|+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            3566777888889999999999999999999999999985

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=90.84  E-value=0.79  Score=41.05  Aligned_cols=75  Identities=23%  Similarity=0.270  Sum_probs=66.1

Q ss_pred             ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHhCC
Q psy4702          53 KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYG  127 (138)
Q Consensus        53 ~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~~g  127 (138)
                      ++..+.|+..+.||++.+|.-++-.+.|++.++....+.+.+.+++..+..|...++..|.+.|..+|+.+....
T Consensus        76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~  150 (503)
T PF10508_consen   76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP  150 (503)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc
Confidence            567788999999999999999999999999988888899999999999999987776688999999999887543

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=90.72  E-value=0.53  Score=39.13  Aligned_cols=101  Identities=21%  Similarity=0.164  Sum_probs=75.5

Q ss_pred             CCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHh-------cCCCcccchhhhhhhhhhhhcChHHHHHHhhhh
Q psy4702          24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQIL-------AHPDVGVQHRALVIVGNILSAGKELAERVLSTE   96 (138)
Q Consensus        24 ED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~-------~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~   96 (138)
                      +|...+..|..+|+.|-. .+..=..+.+.+++..|..++       ...+..+||-.+.|+--+- =++++++.+...+
T Consensus       162 ~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~  239 (312)
T PF03224_consen  162 SDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS-FEPEIAEELNKKY  239 (312)
T ss_dssp             HHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT-TSHHHHHHHHTTS
T ss_pred             CCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh-cCHHHHHHHhccc
Confidence            455556788888998876 465555555588999999988       2356678999999998764 4568899999999


Q ss_pred             HHHHHHHhhccccH-HHHHHHHHHHHHHHhC
Q psy4702          97 LMEILMALTLLEGE-EVRKLALQALAKGEEY  126 (138)
Q Consensus        97 ~leiL~~~~k~~~~-~v~~~a~eaLk~~~~~  126 (138)
                      ++-.|..+.|.+.. +|+.++..+|+-+++.
T Consensus       240 ~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~  270 (312)
T PF03224_consen  240 LIPLLADILKDSIKEKVVRVSLAILRNLLSK  270 (312)
T ss_dssp             HHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred             hHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            99999999998754 9999999999877754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=90.63  E-value=0.43  Score=29.50  Aligned_cols=54  Identities=22%  Similarity=0.168  Sum_probs=41.2

Q ss_pred             HHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhh
Q psy4702          27 ETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNI   81 (138)
Q Consensus        27 ~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nm   81 (138)
                      ..|.+|.-+|+.+....+...+. ..+.-++.|..++.|+++.+|...+..+.||
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            57889999998876544444444 2277889999999999999988888877765

...

>KOG0166|consensus

Probab=90.40  E-value=1.5  Score=40.31  Aligned_cols=112  Identities=22%  Similarity=0.246  Sum_probs=88.7

Q ss_pred             hhhhhhhhc-CCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHH
Q psy4702          13 QVRFLFLLT-CEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAER   91 (138)
Q Consensus        13 RlklLvll~-~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~k   91 (138)
                      .++-+|-+- ..+++.++-.|+=||.-+.+-+...-+.+++..-+.+|..|..+++++++-.++-.+.|++..+......
T Consensus       110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~  189 (514)
T KOG0166|consen  110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY  189 (514)
T ss_pred             cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence            455555544 4677899999999998887755566666667778899999999999999999999999999999899999


Q ss_pred             HhhhhHHHHHHHhhccccH-HHHHHHHHHHHHHH
Q psy4702          92 VLSTELMEILMALTLLEGE-EVRKLALQALAKGE  124 (138)
Q Consensus        92 l~es~~leiL~~~~k~~~~-~v~~~a~eaLk~~~  124 (138)
                      +++.|+|+-|......+.. ..+..+.-+|..+-
T Consensus       190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc  223 (514)
T KOG0166|consen  190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC  223 (514)
T ss_pred             HHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            9999999999988766554 44555555555443

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=90.01  E-value=0.36  Score=38.85  Aligned_cols=91  Identities=16%  Similarity=0.188  Sum_probs=60.0

Q ss_pred             CHHHHHhhhhhhhhhccCCHHHHhhhhh----ccHHHHHHH-HhcC-CCcccchhhhhhhhhhhhcChHHHHHHhhhhHH
Q psy4702          25 DTETACAAAGALAMLTSVSTPVCSMLLE----KNWVDIFKQ-ILAH-PDVGVQHRALVIVGNILSAGKELAERVLSTELM   98 (138)
Q Consensus        25 D~~tr~AA~GALAmLT~~~~~~c~~I~~----~~wleil~~-L~~~-~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~l   98 (138)
                      +..+|.|++..+--++..   .++.-.+    ..-+..+.. +... .++|..||.+|.+.|++..+.+..+....-|+-
T Consensus       170 ~kn~~~A~ATl~~Nlsv~---~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~  246 (268)
T PF08324_consen  170 NKNVRIALATLLLNLSVL---LHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVK  246 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHH
T ss_pred             cHHHHHHHHHHHHHHHHH---HHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChH
Confidence            667777777766555431   1222112    123444444 2222 799999999999999998787777766666788


Q ss_pred             HHHHHhhccccH-HHHHHHHH
Q psy4702          99 EILMALTLLEGE-EVRKLALQ  118 (138)
Q Consensus        99 eiL~~~~k~~~~-~v~~~a~e  118 (138)
                      .++....+.+.+ .+.+++.|
T Consensus       247 ~~~~~~~~~~~e~ri~~v~~e  267 (268)
T PF08324_consen  247 SVLSKKANKSKEPRIKEVAAE  267 (268)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHhcccchHHHHHhcc
Confidence            888777766555 77888876

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=88.44  E-value=1.7  Score=31.14  Aligned_cols=70  Identities=20%  Similarity=0.182  Sum_probs=44.4

Q ss_pred             ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcCh-HHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHh
Q psy4702          53 KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGK-ELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEE  125 (138)
Q Consensus        53 ~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~-e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~  125 (138)
                      +.-++.++....|+|..+||=..-.++|+....+ ++-..+  .++++.|..+...+++.|...| +-|..++.
T Consensus        26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSADPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence            6677778888899999999999999999986433 222222  2344444444333333554444 55776653

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=87.93  E-value=1.6  Score=33.27  Aligned_cols=92  Identities=16%  Similarity=0.142  Sum_probs=60.5

Q ss_pred             HHHHhhhhhhhhhccCCHHHHhhhhh-ccHHHHHHHHhc--CCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHH
Q psy4702          27 ETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILA--HPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMA  103 (138)
Q Consensus        27 ~tr~AA~GALAmLT~~~~~~c~~I~~-~~wleil~~L~~--~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~  103 (138)
                      +...|.+-.-+.+- .-|.+|..|+. +..++.+..++.  .+++.+ ...+.=+.|-. +.++-....+-+..+++|..
T Consensus        59 ~~i~~~~~l~~lfp-~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~-~~~~lell~aA-c~d~~~r~~I~~~~~~~L~~  135 (157)
T PF11701_consen   59 SLIIAFSALTALFP-GPPDVGSELFLSEGFLESLLPLASRKSKDRKV-QKAALELLSAA-CIDKSCRTFISKNYVSWLKE  135 (157)
T ss_dssp             HHHHHHHHHHHHCT-TTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHH-HHHHHHHHHHH-TTSHHHHHCCHHHCHHHHHH
T ss_pred             hHHHHHHHHHHHhC-CCHHHHHHHHhhhhHHHHHHHHHhcccCCHHH-HHHHHHHHHHH-HccHHHHHHHHHHHHHHHHH
Confidence            34444444444444 47999999999 999999999999  455544 34433333333 34556677888899999999


Q ss_pred             hhccccH-H-HHHHHHHHHH
Q psy4702         104 LTLLEGE-E-VRKLALQALA  121 (138)
Q Consensus       104 ~~k~~~~-~-v~~~a~eaLk  121 (138)
                      ..|.+.+ . +.-.|.=+|-
T Consensus       136 ~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen  136 LYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HTTTCC-HH-CHHHHHHHHH
T ss_pred             HHccccchHHHHHHHHHHHh
Confidence            9988765 3 5444444443

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=87.74  E-value=1.4  Score=27.11  Aligned_cols=53  Identities=26%  Similarity=0.295  Sum_probs=41.4

Q ss_pred             ccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHH
Q psy4702          69 GVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK  122 (138)
Q Consensus        69 ~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~  122 (138)
                      .+|+.++-.+.|+.....+..+. .-.+++..|..+.+.+...|+..|..||..
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence            46778888888877777666665 677889999998876655999999988864

...

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=86.79  E-value=0.82  Score=25.89  Aligned_cols=38  Identities=13%  Similarity=0.128  Sum_probs=32.1

Q ss_pred             HHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhh
Q psy4702          45 PVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNIL   82 (138)
Q Consensus        45 ~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi   82 (138)
                      ..+..+.+...++.|..|+.++++++|.=.+-.++|+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            34555556779999999999999999999999999985

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG4500|consensus

Probab=86.01  E-value=2.7  Score=38.93  Aligned_cols=91  Identities=15%  Similarity=0.256  Sum_probs=70.5

Q ss_pred             HHhhhhhhhhhccCCHHHHhhhhh-ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhcc
Q psy4702          29 ACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLL  107 (138)
Q Consensus        29 r~AA~GALAmLT~~~~~~c~~I~~-~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~  107 (138)
                      -++|---.-.||+ ++ --.++.. |++++.+..-..++|.+++--|..-+.|....| +++..+++.+.++-|+.|.-+
T Consensus       291 k~~~el~vllltG-De-SMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  291 KRIAELDVLLLTG-DE-SMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HhhhhHhhhhhcC-ch-HHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHH
Confidence            4555555667787 34 4567777 889999999999999999999999999998766 789999999999999999866


Q ss_pred             cc----H-HHHHHHHHHHHH
Q psy4702         108 EG----E-EVRKLALQALAK  122 (138)
Q Consensus       108 ~~----~-~v~~~a~eaLk~  122 (138)
                      +.    + +++-.+-.||.-
T Consensus       368 ~~~vdgnV~~qhA~lsALRn  387 (604)
T KOG4500|consen  368 EKDVDGNVERQHACLSALRN  387 (604)
T ss_pred             hcCCCccchhHHHHHHHHHh
Confidence            32    3 545555555543

>KOG4224|consensus

Probab=85.84  E-value=0.9  Score=41.27  Aligned_cols=103  Identities=20%  Similarity=0.160  Sum_probs=73.1

Q ss_pred             hhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHH
Q psy4702          19 LLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELM   98 (138)
Q Consensus        19 ll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~l   98 (138)
                      ++...-|....+||+-++.-|.- .-.=|--|..-.|++.|..=.+.|..++|.-.+=|+-|++.- .+.--|+-.+|++
T Consensus        92 ~llqs~d~~Iq~aa~~alGnlAV-n~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL  169 (550)
T KOG4224|consen   92 ALLQSCDKCIQCAAGEALGNLAV-NMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGAL  169 (550)
T ss_pred             HHHhCcchhhhhhhhhhhcccee-ccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccch
Confidence            34444556666776666654432 233333344456888888888899999999999999999875 3556789999999


Q ss_pred             HHHHHhhccccHHHHHHHHHHHHHH
Q psy4702          99 EILMALTLLEGEEVRKLALQALAKG  123 (138)
Q Consensus        99 eiL~~~~k~~~~~v~~~a~eaLk~~  123 (138)
                      ++|+.++|..+-.+...+..+|-.+
T Consensus       170 ~pltrLakskdirvqrnatgaLlnm  194 (550)
T KOG4224|consen  170 EPLTRLAKSKDIRVQRNATGALLNM  194 (550)
T ss_pred             hhhHhhcccchhhHHHHHHHHHHHh
Confidence            9999988876546666676666443

>KOG1048|consensus

Probab=85.70  E-value=1.5  Score=41.78  Aligned_cols=93  Identities=14%  Similarity=0.052  Sum_probs=71.8

Q ss_pred             hhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh-ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChH--HHHH
Q psy4702          15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKE--LAER   91 (138)
Q Consensus        15 klLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~-~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e--~a~k   91 (138)
                      +=.+.|++--|...+..|++=+.+++- .+.-+++-+. -+++.-|..|+.|++.++|-...=.+||++..+-.  ---.
T Consensus       236 pe~i~mL~~q~~~~qsnaaaylQHlcf-gd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla  314 (717)
T KOG1048|consen  236 PEVISMLMSQDPSVQSNAAAYLQHLCF-GDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA  314 (717)
T ss_pred             HHHHHHHhccChhhhHHHHHHHHHHHh-hhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence            445778888888899999999999997 5555555444 88999999999999999999999999999975322  2233


Q ss_pred             HhhhhHHHHHHHhhccc
Q psy4702          92 VLSTELMEILMALTLLE  108 (138)
Q Consensus        92 l~es~~leiL~~~~k~~  108 (138)
                      +.+-+++--|+.+.+.+
T Consensus       315 i~~~~Gv~~l~~~Lr~t  331 (717)
T KOG1048|consen  315 IKELNGVPTLVRLLRHT  331 (717)
T ss_pred             hhhcCChHHHHHHHHhh
Confidence            66677777777776654

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=85.61  E-value=4.8  Score=38.33  Aligned_cols=93  Identities=20%  Similarity=0.146  Sum_probs=79.2

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      +++|+-+-+.++.++...+.+.|--||- ++.--..|.+..-++-|..|..++++++++=++=+++|+- .+.++..+++
T Consensus       292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV  369 (708)
T PF05804_consen  292 VSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLS-FDPELRSQMV  369 (708)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhC-cCHHHHHHHH
Confidence            4566666678899999999999999997 6776666766779999999999999999999999999985 5668889999


Q ss_pred             hhhHHHHHHHhhccc
Q psy4702          94 STELMEILMALTLLE  108 (138)
Q Consensus        94 es~~leiL~~~~k~~  108 (138)
                      +.|++.-|..+.+.+
T Consensus       370 ~~GlIPkLv~LL~d~  384 (708)
T PF05804_consen  370 SLGLIPKLVELLKDP  384 (708)
T ss_pred             HCCCcHHHHHHhCCC
Confidence            999999888887754

>KOG4199|consensus

Probab=84.27  E-value=3.8  Score=36.89  Aligned_cols=96  Identities=11%  Similarity=0.239  Sum_probs=64.1

Q ss_pred             CCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCc-ccc--hhhhhhhhhhhhcChHHHHHHhhhhHHHH
Q psy4702          24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDV-GVQ--HRALVIVGNILSAGKELAERVLSTELMEI  100 (138)
Q Consensus        24 ED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~-~lq--HRG~viv~Nmi~a~~e~a~kl~es~~lei  100 (138)
                      -|++.-.-++|+|-.|.- .+..|+.|.+..|+++|.++..|-|+ +.+  -|-+.-..--++.+.++-..|++.|++++
T Consensus       254 ~dp~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~  332 (461)
T KOG4199|consen  254 IDPDSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDK  332 (461)
T ss_pred             CCccHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHH
Confidence            456666667788877765 79999999998899999998887443 332  12222222233445566678999999999


Q ss_pred             HHHhhcc-ccH-HHHHHHHHHH
Q psy4702         101 LMALTLL-EGE-EVRKLALQAL  120 (138)
Q Consensus       101 L~~~~k~-~~~-~v~~~a~eaL  120 (138)
                      +..+.-. +++ .|++.+--|+
T Consensus       333 ii~l~~~h~~~p~Vi~~~~a~i  354 (461)
T KOG4199|consen  333 IITLALRHSDDPLVIQEVMAII  354 (461)
T ss_pred             HHHHHHHcCCChHHHHHHHHHH
Confidence            9988764 223 5555444443

>KOG2160|consensus

Probab=83.03  E-value=16  Score=32.13  Aligned_cols=95  Identities=16%  Similarity=0.139  Sum_probs=79.4

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCc-ccchhhhhhhhhhhhcChHHHHHH
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDV-GVQHRALVIVGNILSAGKELAERV   92 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~-~lqHRG~viv~Nmi~a~~e~a~kl   92 (138)
                      +..++.|-...|..+|..|+=.++...+..|++-..+++..+++.|..++.++++ ..+--.++-+.++|...+-.-.++
T Consensus       126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~f  205 (342)
T KOG2160|consen  126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEF  205 (342)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHH
Confidence            3455557777899999999999999888899999999996699988888776544 455778899999999888777899


Q ss_pred             hhhhHHHHHHHhhccc
Q psy4702          93 LSTELMEILMALTLLE  108 (138)
Q Consensus        93 ~es~~leiL~~~~k~~  108 (138)
                      ...++..+|+.+.+..
T Consensus       206 l~~~G~~~L~~vl~~~  221 (342)
T KOG2160|consen  206 LKLNGYQVLRDVLQSN  221 (342)
T ss_pred             HhcCCHHHHHHHHHcC
Confidence            9999999999998874

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=82.69  E-value=0.87  Score=34.33  Aligned_cols=69  Identities=17%  Similarity=0.215  Sum_probs=50.0

Q ss_pred             hhhhhh-hcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh-ccHHHHHHHHhcCCCcccchhhhhhhhhhhh
Q psy4702          14 VRFLFL-LTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGVQHRALVIVGNILS   83 (138)
Q Consensus        14 lklLvl-l~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~-~~wleil~~L~~~~~~~lqHRG~viv~Nmi~   83 (138)
                      +|.|+- |...+|..+-.-|..=+..+--.+|. .++|++ -+..+.+-.|+.|+|+++++.++.+|.=+|.
T Consensus        45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            444444 44557777776677667766654554 677777 7899999999999999999999999987664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PRK09687 putative lyase; Provisional

Probab=82.44  E-value=5.2  Score=33.31  Aligned_cols=25  Identities=20%  Similarity=0.126  Sum_probs=12.5

Q ss_pred             HHHHHHHhhccccHHHHHHHHHHHH
Q psy4702          97 LMEILMALTLLEGEEVRKLALQALA  121 (138)
Q Consensus        97 ~leiL~~~~k~~~~~v~~~a~eaLk  121 (138)
                      .++.|....+.+...|+..|..+|-
T Consensus       129 a~~~l~~~~~D~~~~VR~~a~~aLg  153 (280)
T PRK09687        129 IVEQSQITAFDKSTNVRFAVAFALS  153 (280)
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHh
Confidence            3444444433332266666666663

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=82.37  E-value=6.1  Score=23.07  Aligned_cols=38  Identities=21%  Similarity=0.110  Sum_probs=30.7

Q ss_pred             hHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHH
Q psy4702          86 KELAERVLSTELMEILMALTLLEGEEVRKLALQALAKG  123 (138)
Q Consensus        86 ~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~  123 (138)
                      .+..+.+++.|++..|..+.+.++.++++.|.-||.-+
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl   39 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNL   39 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            34567799999999999999955558889998888644

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=81.91  E-value=4.6  Score=38.67  Aligned_cols=97  Identities=24%  Similarity=0.256  Sum_probs=53.8

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHH---hhhhh-ccH------------------HHHHHHHhcCCCcccc
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVC---SMLLE-KNW------------------VDIFKQILAHPDVGVQ   71 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c---~~I~~-~~w------------------leil~~L~~~~~~~lq   71 (138)
                      +..|..+..++|...|.+|..+|+.+-. .+.+.   ...++ ++|                  ++.|..++.|+++.+|
T Consensus       777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~-~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR  855 (897)
T PRK13800        777 GDAVRALTGDPDPLVRAAALAALAELGC-PPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVR  855 (897)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcCC-cchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHH
Confidence            3556666677788888888888887764 22221   11111 222                  3445555566666666


Q ss_pred             hhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHH
Q psy4702          72 HRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA  121 (138)
Q Consensus        72 HRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk  121 (138)
                      ...+-.+..+ ..         .....+.|....+.++..|++.|.++|.
T Consensus       856 ~~A~~aL~~~-~~---------~~~a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        856 KAAVLALTRW-PG---------DPAARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHHHHHHhcc-CC---------CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            6555555443 11         1123445555545443477777777775

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=81.86  E-value=3  Score=27.17  Aligned_cols=57  Identities=28%  Similarity=0.313  Sum_probs=39.7

Q ss_pred             HHHHHHh-cCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          57 DIFKQIL-AHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        57 eil~~L~-~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      +.|...+ .++++.+|+..+.++.++           ...+.+..|..+.+.+...|+..|..+|...-
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~-----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~   59 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGEL-----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG   59 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCC-----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHc-----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            4556655 899999999887777743           22255778888875443388888888887553

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=81.03  E-value=5  Score=22.49  Aligned_cols=36  Identities=31%  Similarity=0.195  Sum_probs=28.9

Q ss_pred             HHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHH
Q psy4702          88 LAERVLSTELMEILMALTLLEGEEVRKLALQALAKG  123 (138)
Q Consensus        88 ~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~  123 (138)
                      ....+++.|+++.|..+.+.++.++++.|..+|.-+
T Consensus         4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl   39 (41)
T smart00185        4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL   39 (41)
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            456788999999999998855448888888888654

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=80.77  E-value=3.7  Score=37.20  Aligned_cols=93  Identities=19%  Similarity=0.251  Sum_probs=75.6

Q ss_pred             hhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhh
Q psy4702          15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLS   94 (138)
Q Consensus        15 klLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~e   94 (138)
                      -+|.=|--..|+++-.-|-=|+..|+...-.+...|++..-+.-|..|+.||+..+|--.+-.|.|++..+..--.-++.
T Consensus       246 piL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~  325 (526)
T COG5064         246 PILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIIN  325 (526)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehhee
Confidence            34444455689999999999999999876677788888445555999999999999999999999999887666677889


Q ss_pred             hhHHHHHHHhhcc
Q psy4702          95 TELMEILMALTLL  107 (138)
Q Consensus        95 s~~leiL~~~~k~  107 (138)
                      .|.+-.+..+...
T Consensus       326 ~G~L~a~~~lLs~  338 (526)
T COG5064         326 CGALKAFRSLLSS  338 (526)
T ss_pred             cccHHHHHHHhcC
Confidence            9988888877644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	138
3now_A	810	Unc-45 From Drosophila Melanogaster Length = 810		8e-11

>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster Length = 810

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 41  SVSTPVCSMLLE-KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELME 99
           SVS   C  +L   +W+DI   ++A+P   VQHR +VI+ N+++AG+E+A+++  T++ME
Sbjct: 694 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIME 753
Query: 100 ILMALTLLEGE---EVRKLALQALA 121
           +L  L  L  +   + R++A Q LA
Sbjct: 754 LLSGLGQLPDDTRAKAREVATQCLA 778

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-23
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	7e-17
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-08
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-08
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-08
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-07
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-05
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-08
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-05
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-05
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-04
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-07
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-07
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-06
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	6e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-05
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-04
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-04
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-04
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-05
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-04

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 93.8 bits (232), Expect = 2e-23
 Identities = 55/132 (41%), Positives = 82/132 (62%), Gaps = 4/132 (3%)

Query: 11  CSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVG 69
             +V+FL LL  +ED ETA A AGALA++TSVS   C  +L   +W+DI   ++A+P   
Sbjct: 664 NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPA 723

Query: 70  VQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEG---EEVRKLALQALAKGEEY 126
           VQHR +VI+ N+++AG+E+A+++  T++ME+L  L  L      + R++A Q LA  E Y
Sbjct: 724 VQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783

Query: 127 GIIRRPGEGEEE 138
            II R    E  
Sbjct: 784 RIIERSDNAEIP 795

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 20/106 (18%), Positives = 40/106 (37%)

Query: 16  FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRAL 75
            L LL  +        +  AL  L S++  V   ++++  V   +  L    + +   A 
Sbjct: 585 LLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAA 644

Query: 76  VIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
             + N++ +   +     + + ++ L  L   E EE       ALA
Sbjct: 645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA 690

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 74.8 bits (183), Expect = 7e-17
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 7/114 (6%)

Query: 14  VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHP--DVGV 70
              L  L    D E+  A A   A + +    +   LL  K  ++   Q+ A    D+ +
Sbjct: 656 FNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIEL 715

Query: 71  QHRALVIVGNILSAGKELAERVLSTELMEILM----ALTLLEGEEVRKLALQAL 120
           + R L++   +     +     +   L E           L+  +       A+
Sbjct: 716 RQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAI 769

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 50.8 bits (121), Expect = 2e-08
 Identities = 21/105 (20%), Positives = 45/105 (42%)

Query: 17  LFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALV 76
           L  L    D E    +  A++ LT        M+++K  V    ++L   ++ +   AL 
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296

Query: 77  IVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
            +GNI++   E  ++V+    + +  +L       ++K A   ++
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 50.0 bits (119), Expect = 3e-08
 Identities = 19/107 (17%), Positives = 42/107 (39%)

Query: 15  RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
           +F+  L   + +     +A AL  + S ++     +++   +  F  +LA P   +  +A
Sbjct: 104 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 163

Query: 75  LVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
           +  +GNI   G    + V+    ++ L+AL  +              
Sbjct: 164 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 15  RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
           RF+  L  +E+      +A  L  + S ++    ++++   V IF ++L+     VQ +A
Sbjct: 68  RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127

Query: 75  LVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKL-----ALQALAKGEE 125
           +  +GNI        + VL   ++  L+ L   +   +        AL  L +G+ 
Sbjct: 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQL-FSKQNRLTMTRNAVWALSNLCRGKS 182

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 24/108 (22%), Positives = 45/108 (41%)

Query: 14  VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
           +  L  L    DT+    A  AL+ L+         +++        ++L H D  V   
Sbjct: 194 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSP 253

Query: 74  ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
           AL  VGNI++      + +L+   ++ L+ L     E ++K A   ++
Sbjct: 254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 18/108 (16%), Positives = 40/108 (37%)

Query: 14  VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
            R L  L    D +    A  A+  + +       ++L  + +     +L+ P   ++  
Sbjct: 236 CRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKE 295

Query: 74  ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
           A   + NI +  +   + V+   +   L+++        RK A  A+ 
Sbjct: 296 ACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 12/118 (10%)

Query: 17  LFLLTCEEDTETACAAAGALAMLTSVSTP-VCSMLLEKNWVDIFKQILAHPDVGVQHRAL 75
           L  +    +  T   AA A+   TS  +      L+E   +     +L   D  +   AL
Sbjct: 323 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382

Query: 76  VIVGNILSAGKE-----------LAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
             + NIL  G++               +     ++ +  L   E +E+ + A   +  
Sbjct: 383 NGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 27/109 (24%), Positives = 47/109 (43%)

Query: 14  VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
           +  L  L    + +    A  AL+ + S        +++   +    Q+L+ P+  +   
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 199

Query: 74  ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
           AL  + NI S G E  + V     +E L  L   E E+++K A +AL K
Sbjct: 200 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 24  EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS 83
           +D +   +A    + + S        +++   +    Q+L+ P+  +   AL  + NI S
Sbjct: 24  DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83

Query: 84  AGKELAERVLSTELMEILMALTLLEGEEVRK---LALQALAKGEEY 126
            G E  + V+    +  L+ L     E++ +    AL  +A G   
Sbjct: 84  GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 15  RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
             + LL+   + +    A  AL+ + S        +++   +    Q+L+ P+  +   A
Sbjct: 58  ALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116

Query: 75  LVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
           L  + NI S G E  + V+    +  L+ L     E++ + AL AL+
Sbjct: 117 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 19  LLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIV 78
           LL+   + +    A  AL+ + S        + E   ++  +Q+ +H +  +Q  A   +
Sbjct: 188 LLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246

Query: 79  GNI 81
             +
Sbjct: 247 EKL 249

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 18/104 (17%), Positives = 38/104 (36%)

Query: 17  LFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALV 76
           L LL  +        A  A++ L           L  +   +  + +      ++ ++  
Sbjct: 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAF 189

Query: 77  IVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQAL 120
           ++ N+L    E    + S  +++ L+AL   E     +  L AL
Sbjct: 190 LLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGAL 233

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 9/84 (10%), Positives = 21/84 (25%)

Query: 14  VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
              L     ++  +    +A  L  L          L     V     ++          
Sbjct: 169 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEH 228

Query: 74  ALVIVGNILSAGKELAERVLSTEL 97
            L  + ++++   +        EL
Sbjct: 229 VLGALCSLVTDFPQGVRECREPEL 252

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 22/107 (20%), Positives = 47/107 (43%)

Query: 15  RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
           R +  +   +       AA AL  + S ++    ++++ + V +F Q+L    V V+ +A
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193

Query: 75  LVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
           +  +GN+     +  + VL    ME ++ L       + + A   L+
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 240

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 25/108 (23%), Positives = 46/108 (42%)

Query: 14  VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
           +  L  L    DTET   A  A++ L+         +++        ++L+H    VQ  
Sbjct: 259 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 318

Query: 74  ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
           AL  VGNI++      + V++  ++  L  L     E ++K A   ++
Sbjct: 319 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 2/113 (1%)

Query: 12  SQVRFLFLLTCEEDTETACAAAGALA-MLTSVSTPVCSMLLEKNWVDIFKQILAHPD-VG 69
            ++  +      +D +   +A      +L+    P   ++++   V    + +       
Sbjct: 87  QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146

Query: 70  VQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
           +Q  A   + NI S      + V+  + + + + L      EV++ A+ AL  
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 27/106 (25%), Positives = 46/106 (43%)

Query: 17  LFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALV 76
           L  L    + +    A  AL+ + S        +++   +    Q+L+ P+  +   AL 
Sbjct: 101 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 160

Query: 77  IVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
            + NI S G E  + V     +E L  L   E E+++K A +AL K
Sbjct: 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 206

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 3/109 (2%)

Query: 20  LTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVG 79
                D +   +A   L+ + S        +++   +    Q+L+ P+  +   AL  + 
Sbjct: 20  QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79

Query: 80  NILSAGKELAERVLSTELMEILMALTLLEGEEVRK---LALQALAKGEE 125
           NI S G E  + V+    +  L+ L     E++ +    AL  +A G  
Sbjct: 80  NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 43.5 bits (102), Expect = 6e-06
 Identities = 11/99 (11%), Positives = 26/99 (26%)

Query: 23  EEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNIL 82
           + + +        L +L   +     ++L          I+              V  +L
Sbjct: 287 KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346

Query: 83  SAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
           S        ++    M+ L        + + +  L  L 
Sbjct: 347 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 385

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 1/119 (0%)

Query: 14  VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
           +     L           AAG L  L          +  +       ++L   + GV   
Sbjct: 595 IPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATY 653

Query: 74  ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGIIRRP 132
           A  ++  +     +  ++ LS EL   L     +   E   L L   A+GE  G  +  
Sbjct: 654 AAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDD 712

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 1/107 (0%)

Query: 15  RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
             +  +    D ETA   +G L  L S        + +   +     +L  P   V   A
Sbjct: 196 AIVRTMQNTNDVETARCTSGTLHNL-SHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHA 254

Query: 75  LVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
           +  + N+L   +     V     ++ ++AL      +   +    L 
Sbjct: 255 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 1/106 (0%)

Query: 16  FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRAL 75
            + LL  + + +        L +L   +     ++L          I+            
Sbjct: 145 MVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 203

Query: 76  VIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
             V  +LS        ++    M+ L        + + +  L  L 
Sbjct: 204 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 5/110 (4%)

Query: 14  VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
           ++ L L   +            L  L+  +T        +  +    Q+L   D+ V   
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTLVQLLGSDDINVVTC 282

Query: 74  ALVIVGNILSAGKELAERVLSTELMEILMALTLLEG--EEVRKLALQALA 121
           A  I+ N+     +    V     +E L+   L  G  E++ + A+ AL 
Sbjct: 283 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 332

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 1/119 (0%)

Query: 14  VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHR 73
           +     L           AAG L  L +        +  +       ++L   + GV   
Sbjct: 459 IPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 517

Query: 74  ALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGIIRRP 132
           A  ++  +     +  ++ LS EL   L     +   E   L L   A+GE  G  +  
Sbjct: 518 AAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDD 576

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 1/106 (0%)

Query: 16  FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRAL 75
            +  +    D ETA   AG L  L S        + +   +    ++L  P   V   A+
Sbjct: 61  IVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 119

Query: 76  VIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
             + N+L   +     V     ++ ++AL      +   +    L 
Sbjct: 120 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 1/106 (0%)

Query: 16  FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRAL 75
            + LL  + + +        L +L   +     ++L          I+            
Sbjct: 148 MVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 206

Query: 76  VIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALA 121
             V  +LS        ++    M+ L        + + +  L  L 
Sbjct: 207 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 1/108 (0%)

Query: 15  RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
             +  +    D ETA   AG L  L S        + +   +    ++L  P   V   A
Sbjct: 63  AIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYA 121

Query: 75  LVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
           +  + N+L   +     V     ++ ++AL      +   +    L  
Sbjct: 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.77
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.51
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	98.92
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	98.88
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	98.76
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	98.72
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	98.66
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	98.55
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	98.35
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	98.27
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	98.26
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.2
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.19
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	98.17
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	98.17
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	98.12
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.12
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	98.09
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	98.03
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	98.02
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	98.01
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	98.01
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	97.99
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	97.96
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	97.96
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.89
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	97.81
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	97.79
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	97.78
3nmz_A	458	APC variant protein; protein-protein complex, arma	97.67
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	97.67
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	97.62
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	97.43
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	97.4
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	97.37
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	97.19
3nmz_A	458	APC variant protein; protein-protein complex, arma	97.15
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	96.8
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	96.09
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	96.05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	95.49
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	94.91
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	94.73
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	94.65
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	94.51
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	94.33
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	93.7
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	92.99
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	92.81
3grl_A	651	General vesicular transport factor P115; vesicle t	92.62
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	92.05
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	90.95
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	90.58
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	90.36
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	90.35
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	90.18
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	89.68
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	89.2
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	89.18
1qgr_A	876	Protein (importin beta subunit); transport recepto	86.78
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	85.53
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	85.39
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	85.18
3grl_A	651	General vesicular transport factor P115; vesicle t	84.88
1qgr_A	876	Protein (importin beta subunit); transport recepto	83.89
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	83.65
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	81.52

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.77  E-value=3.3e-19  Score=164.39  Aligned_cols=127  Identities=43%  Similarity=0.714  Sum_probs=114.8

Q ss_pred             CCChhhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh-ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHH
Q psy4702          10 YCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKEL   88 (138)
Q Consensus        10 ~n~RlklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~-~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~   88 (138)
                      +++++++|+.|.+.+|..++++|+|||++||+.++..++.|++ .+|++.|..|+.++++++|||++.++.|+..++++.
T Consensus       663 ~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~  742 (810)
T 3now_A          663 NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI  742 (810)
T ss_dssp             SSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            4689999999999999999999999999999866999999999 999999999999999999999999999999999999


Q ss_pred             HHHHhhhhHHHHHHHhhccc--cH-HHHHHHHHHHHHHHhCCCccCCCCCC
Q psy4702          89 AERVLSTELMEILMALTLLE--GE-EVRKLALQALAKGEEYGIIRRPGEGE  136 (138)
Q Consensus        89 a~kl~es~~leiL~~~~k~~--~~-~v~~~a~eaLk~~~~~glIk~~~~~~  136 (138)
                      ++++++.|++++|..+.+.+  ++ ++++.|.+||+.+++||+|+|+++.+
T Consensus       743 ~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~~~~~~  793 (810)
T 3now_A          743 AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAE  793 (810)
T ss_dssp             HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC-------
T ss_pred             HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccCCCccc
Confidence            99999999999999999876  34 99999999999999999999998644

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.51  E-value=5.1e-15  Score=136.51  Aligned_cols=97  Identities=19%  Similarity=0.211  Sum_probs=82.0

Q ss_pred             hhhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh-ccHHHHHHHHhcC--CCcccchhhhhhhhhhhh-c----
Q psy4702          13 QVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAH--PDVGVQHRALVIVGNILS-A----   84 (138)
Q Consensus        13 RlklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~-~~wleil~~L~~~--~~~~lqHRG~viv~Nmi~-a----   84 (138)
                      |+|+|+.|++.+|+++|+||+||||+||+.+|.+|+.|++ ++|++.+.++|.+  +++++||||+++++||++ +    
T Consensus       655 rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~  734 (778)
T 3opb_A          655 NFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNG  734 (778)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTT
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCC
Confidence            5999999999999999999999999997558999999999 8999999999999  999999999999999995 2    


Q ss_pred             ChHHHHHHh-hhhHHHHHHHhhcccc
Q psy4702          85 GKELAERVL-STELMEILMALTLLEG  109 (138)
Q Consensus        85 ~~e~a~kl~-es~~leiL~~~~k~~~  109 (138)
                      +++.-.++. .+...+.|..+.|.++
T Consensus       735 ~~~~~~~~~~~~~l~~~l~~~lk~~~  760 (778)
T 3opb_A          735 TNEVYPLLQENQKLKDALNMSLKRGD  760 (778)
T ss_dssp             TTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred             ChHHHHHHhcChHHHHHHHHHHhCCC
Confidence            223334444 5667777777777643

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=98.92  E-value=1.3e-08  Score=74.75  Aligned_cols=111  Identities=24%  Similarity=0.254  Sum_probs=99.0

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      +..++-+....|..++..|.++|..|+..++..+..+++..+++.|..++.++++++|..++.++.|+...+.+....+.
T Consensus        98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~  177 (210)
T 4db6_A           98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK  177 (210)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            45667777788999999999999999976788888888888999999999999999999999999999998888889999


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      +.|+++.|..+.+.+..++.+.|..+|..+.
T Consensus       178 ~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          178 EAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            9999999999988654589999999998764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=98.88  E-value=3.1e-08  Score=73.32  Aligned_cols=118  Identities=25%  Similarity=0.273  Sum_probs=104.2

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      +..++-+...+|+.++..|.++|..|+..++.....+.+...++.|..++.++++++|..++.++.|+...+.+..+.++
T Consensus       130 i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  209 (252)
T 4hxt_A          130 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIV  209 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            56677777888999999999999999986677777777788999999999999999999999999999988888899999


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCccC
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALAKGEEYGIIRR  131 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~~glIk~  131 (138)
                      +.|+++.|..+.+.++.++++.|..+|..+.....-..
T Consensus       210 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  247 (252)
T 4hxt_A          210 DAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEH  247 (252)
T ss_dssp             HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC
T ss_pred             HCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCccc
Confidence            99999999999887655999999999999987665443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=98.76  E-value=9.6e-08  Score=70.65  Aligned_cols=111  Identities=28%  Similarity=0.299  Sum_probs=97.7

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      +..++-+...+|..++..|.++|..|+..++..+..+.+...++.|..++.++++++|..++-++.|+...+.+..+.+.
T Consensus        88 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  167 (252)
T 4hxt_A           88 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV  167 (252)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            56667777788999999999999999954788888888888999999999999999999999999999988888889999


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      +.|++..|..+.+.++.+++..|..+|..+.
T Consensus       168 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  198 (252)
T 4hxt_A          168 DAGGVEVLVKLLTSTDSEVQKEAARALANIA  198 (252)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            9999999999988655588888888887665

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=98.72  E-value=1.7e-07  Score=68.70  Aligned_cols=113  Identities=21%  Similarity=0.218  Sum_probs=97.3

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      +..++-+-..+|...+..|..+|..|+..++.....+++...++.|..++.++++.+|..++.++.|+...+.+..+.++
T Consensus        56 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  135 (210)
T 4db6_A           56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI  135 (210)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34455555667999999999999999964778888888888999999999999999999999999999998888888999


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHHHHHhC
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      +.|++..|..+.+.++.++++.|..+|..+...
T Consensus       136 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A          136 DAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            999999999998876558888888888877654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=98.66  E-value=8.4e-08  Score=72.00  Aligned_cols=111  Identities=24%  Similarity=0.254  Sum_probs=96.3

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      +..|+-+...+|..++..|.++|..|+..++.....+.+...++.|..++.++++.+|..++-++.|+...+.+..+.++
T Consensus       140 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  219 (252)
T 4db8_A          140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK  219 (252)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            45666666778999999999999999986667777777788999999999999999999999999999988888899999


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      +.|+++.|..+.+.++.++.+.|..+|..+.
T Consensus       220 ~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          220 EAGALEKLEQLQSHENEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred             HCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            9999999999987664488899988887553

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=98.55  E-value=7.9e-07  Score=66.63  Aligned_cols=111  Identities=22%  Similarity=0.234  Sum_probs=94.4

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      +..++-+-..+|..++..|.++|..|+..++..+..+.+...++.|..++.++++++|..++-++.|+...+.+..+.++
T Consensus        98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  177 (252)
T 4db8_A           98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI  177 (252)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            45556666668999999999999999985444447777788999999999999999999999999999998888888999


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      +.|++..|..+.+.++.++++.|..+|..+.
T Consensus       178 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  208 (252)
T 4db8_A          178 DAGALPALVQLLSSPNEQILQEALWALSNIA  208 (252)
T ss_dssp             HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence            9999999999988765588888888887664

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=98.35  E-value=1.8e-06  Score=69.19  Aligned_cols=113  Identities=14%  Similarity=0.142  Sum_probs=95.5

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhc-ChHHHHHH
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSA-GKELAERV   92 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a-~~e~a~kl   92 (138)
                      +..++-+....|..+|.+|..+|..++..++..++.+++...++.|..++.++++++|..++.++.|+... +.+..+.+
T Consensus       278 l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l  357 (450)
T 2jdq_A          278 LQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYL  357 (450)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            34455556667899999999999999965688888888777999999999999999999999999999875 67778889


Q ss_pred             hhhhHHHHHHHhhccccHHHHHHHHHHHHHHHhC
Q psy4702          93 LSTELMEILMALTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus        93 ~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      ++.+++..|..+.+.++.++++.|..+|..+...
T Consensus       358 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  391 (450)
T 2jdq_A          358 VELGCIKPLCDLLTVMDSKIVQVALNGLENILRL  391 (450)
T ss_dssp             HHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999998876458888888888777653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=98.27  E-value=8.1e-06  Score=65.36  Aligned_cols=112  Identities=16%  Similarity=0.214  Sum_probs=93.9

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      +..++-+...+|..++.+|..+|..|+..++..++.+++...++.|..++.++++.+|+.++-++.|+...+.+..+.++
T Consensus       236 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~  315 (450)
T 2jdq_A          236 CRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI  315 (450)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34455555678899999999999999986677777777777999999999999999999999999999988888888899


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHHHHHh
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALAKGEE  125 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~  125 (138)
                      +.+++..|..+.+.++.+++..|..+|..+..
T Consensus       316 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~  347 (450)
T 2jdq_A          316 DANIFPALISILQTAEFRTRKEAAWAITNATS  347 (450)
T ss_dssp             HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence            99999999999876544777777777766643

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=98.26  E-value=4.9e-06  Score=70.65  Aligned_cols=112  Identities=16%  Similarity=0.149  Sum_probs=96.7

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhh-cChHHHHHH
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS-AGKELAERV   92 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~-a~~e~a~kl   92 (138)
                      +..|+-|....+...+..|+++|..||+.++..+..+.+...++.|..++.+++.++|+-++.++.|+.. ++.+....+
T Consensus       337 l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l  416 (529)
T 3tpo_A          337 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYL  416 (529)
T ss_dssp             GGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            4556666677888999999999999998778888888888899999999999999999999999999976 567888899


Q ss_pred             hhhhHHHHHHHhhccccHHHHHHHHHHHHHHHh
Q psy4702          93 LSTELMEILMALTLLEGEEVRKLALQALAKGEE  125 (138)
Q Consensus        93 ~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~  125 (138)
                      ++.|++..|..+...++.+++..+.+||..+..
T Consensus       417 ~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  449 (529)
T 3tpo_A          417 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  449 (529)
T ss_dssp             HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999887666888888888876654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=98.20  E-value=4.7e-06  Score=74.94  Aligned_cols=102  Identities=24%  Similarity=0.189  Sum_probs=88.5

Q ss_pred             CCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHH
Q psy4702          24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMA  103 (138)
Q Consensus        24 ED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~  103 (138)
                      .++.++.+|.|+|..|+. ++.....|.+..+++.|..|+.++++.+|+.++.++.|+. .+.+..+.|.+.|+++.|..
T Consensus       564 ~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~-~~~~~~~~i~~~g~i~~L~~  641 (780)
T 2z6g_A          564 RMEEIVEACTGALHILAR-DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTE  641 (780)
T ss_dssp             CHHHHHHHHHHHHHHHTT-SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhc-ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHH
Confidence            456789999999999997 7776666656889999999999999999999999999997 56788899999999999999


Q ss_pred             hhccccHHHHHHHHHHHHHHHhCC
Q psy4702         104 LTLLEGEEVRKLALQALAKGEEYG  127 (138)
Q Consensus       104 ~~k~~~~~v~~~a~eaLk~~~~~g  127 (138)
                      +.+.+..+|++.|..||..+.+..
T Consensus       642 Ll~~~~~~Vr~~A~~aL~~l~~~~  665 (780)
T 2z6g_A          642 LLHSRNEGVATYAAAVLFRMSEDK  665 (780)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHcCCCHHHHHHHHHHHHHHHcCC
Confidence            976554599999999999988744

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.19  E-value=5.6e-06  Score=67.46  Aligned_cols=111  Identities=16%  Similarity=0.125  Sum_probs=94.5

Q ss_pred             hhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhh
Q psy4702          16 FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLST   95 (138)
Q Consensus        16 lLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es   95 (138)
                      ++-+|....|...++.|..||+.|+..++.....+.+..+++.|..++.++++.+|-+.+..+.|+...+.+..+.+++.
T Consensus       129 Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~  208 (296)
T 1xqr_A          129 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM  208 (296)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHc
Confidence            34455545578899999999999986467777777776799999999999999999999999999998888899999999


Q ss_pred             hHHHHHHHhhccccHHHHHHHHHHHHHHHhC
Q psy4702          96 ELMEILMALTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus        96 ~~leiL~~~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      |++..|..+.+.++.++++.|..||..+...
T Consensus       209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            9999999998776558888888888777654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=98.17  E-value=3.2e-06  Score=69.27  Aligned_cols=95  Identities=23%  Similarity=0.208  Sum_probs=81.2

Q ss_pred             HHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhc
Q psy4702          27 ETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTL  106 (138)
Q Consensus        27 ~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k  106 (138)
                      ..+.++.++|..|+. ++.....+.+..+++.|..++.++++++|+.+...+.|+. .+.+..+.+.+.|+++.|..+.+
T Consensus       434 ~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~-~~~~~~~~i~~~~~~~~L~~l~~  511 (529)
T 1jdh_A          434 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLH  511 (529)
T ss_dssp             HHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT-TSHHHHHHHHHTTCHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh-cCHHHHHHHHHcCChHHHHHHhc
Confidence            344577789999998 6877777777889999999999999999999999999987 45788899999999999999976


Q ss_pred             cccHHHHHHHHHHHHHH
Q psy4702         107 LEGEEVRKLALQALAKG  123 (138)
Q Consensus       107 ~~~~~v~~~a~eaLk~~  123 (138)
                      .++.+|.+.|..+|..+
T Consensus       512 ~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          512 SRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             CSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            65559999999998764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=98.17  E-value=8.2e-06  Score=69.28  Aligned_cols=112  Identities=16%  Similarity=0.140  Sum_probs=95.0

Q ss_pred             hhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhh-cChHHHHHHh
Q psy4702          15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS-AGKELAERVL   93 (138)
Q Consensus        15 klLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~-a~~e~a~kl~   93 (138)
                      ..|+-|-...+...+..|+++|.-||..++.....+.+...++.|..++.+++.++|..++..+.|+.. ++.+....++
T Consensus       319 ~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~  398 (510)
T 3ul1_B          319 AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV  398 (510)
T ss_dssp             GGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            345555567788899999999999998677777778778899999999999999999999999999986 5677788899


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHHHHHhC
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      +.|+++.|..+.+.++.+++..+.++|..+..+
T Consensus       399 ~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  431 (510)
T 3ul1_B          399 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  431 (510)
T ss_dssp             HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            999999999998876668888888888776543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=98.12  E-value=1.3e-05  Score=65.70  Aligned_cols=104  Identities=17%  Similarity=0.136  Sum_probs=86.7

Q ss_pred             hhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHH
Q psy4702          19 LLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELM   98 (138)
Q Consensus        19 ll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~l   98 (138)
                      +|...+|..+++.|+++|..|+. ++.....|.+...++.|..++.++++++|+.++-+++|+...+.+..+.+++.|++
T Consensus        67 ~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i  145 (529)
T 1jdh_A           67 TMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGL  145 (529)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCH
Confidence            35555799999999999999998 67777777778899999999999999999999999999988776677788899999


Q ss_pred             HHHHHhhccccHHHHHHHHHHHHHH
Q psy4702          99 EILMALTLLEGEEVRKLALQALAKG  123 (138)
Q Consensus        99 eiL~~~~k~~~~~v~~~a~eaLk~~  123 (138)
                      ..|..+.+.+..++...+..+|..+
T Consensus       146 ~~L~~ll~~~~~~~~~~~~~~L~~l  170 (529)
T 1jdh_A          146 QKMVALLNKTNVKFLAITTDCLQIL  170 (529)
T ss_dssp             HHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            9999998865436666666666543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=98.12  E-value=9.2e-06  Score=70.32  Aligned_cols=103  Identities=22%  Similarity=0.178  Sum_probs=88.2

Q ss_pred             CCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHH
Q psy4702          23 EEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILM  102 (138)
Q Consensus        23 eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~  102 (138)
                      ..++.++.+|.+||..|+. ++.....+.+..+++.|..++.++++++|..++.++.|+.. +++..+.+.+.|+++.|.
T Consensus       427 ~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~i~~~g~l~~L~  504 (644)
T 2z6h_A          427 VRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLT  504 (644)
T ss_dssp             SCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCChhHHH
Confidence            3567889999999999998 67665555558899999999999999999999999999874 588899999999999999


Q ss_pred             HhhccccHHHHHHHHHHHHHHHhCC
Q psy4702         103 ALTLLEGEEVRKLALQALAKGEEYG  127 (138)
Q Consensus       103 ~~~k~~~~~v~~~a~eaLk~~~~~g  127 (138)
                      .+.+.+..+|++.|..+|..+.+.+
T Consensus       505 ~ll~~~~~~vr~~A~~aL~~l~~~~  529 (644)
T 2z6h_A          505 ELLHSRNEGVATYAAAVLFRMSEDK  529 (644)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhccC
Confidence            9977664599999999998887644

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=98.09  E-value=7.6e-06  Score=68.24  Aligned_cols=113  Identities=12%  Similarity=0.150  Sum_probs=94.9

Q ss_pred             hhhhhhhcCCC-CHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhc-ChHHHHH
Q psy4702          14 VRFLFLLTCEE-DTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSA-GKELAER   91 (138)
Q Consensus        14 lklLvll~~eE-D~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a-~~e~a~k   91 (138)
                      +..|+-+.... +..++..|.++|.-|+..++..+..+++...++.|..++.++++++|..++..+.|+... +.+....
T Consensus       330 l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  409 (528)
T 4b8j_A          330 LPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY  409 (528)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            34444444445 899999999999999976778888888877899999999999999999999999999876 6888899


Q ss_pred             HhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHhC
Q psy4702          92 VLSTELMEILMALTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus        92 l~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      +++.++++.|..+....+.+++..+..+|..+...
T Consensus       410 l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (528)
T 4b8j_A          410 LVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKV  444 (528)
T ss_dssp             HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999998876558888888888777643

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=98.03  E-value=3.7e-05  Score=64.40  Aligned_cols=111  Identities=23%  Similarity=0.224  Sum_probs=95.5

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      +..|+-+...+|..++..|.++|..|+..++.....+++...++.|..++.++++.++..++-++.|+...+.+..+.++
T Consensus       259 l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  338 (530)
T 1wa5_B          259 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI  338 (530)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHH
Confidence            45566666778899999999999999985677777777777899999999999999999999999999998888889999


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      +.|++..|..+.+.++..+++.|..+|..+.
T Consensus       339 ~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~  369 (530)
T 1wa5_B          339 NAGVLPALRLLLSSPKENIKKEACWTISNIT  369 (530)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             HcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            9999999999988764478888888887665

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=98.02  E-value=3.6e-05  Score=64.48  Aligned_cols=112  Identities=17%  Similarity=0.208  Sum_probs=94.0

Q ss_pred             hhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhh
Q psy4702          15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLS   94 (138)
Q Consensus        15 klLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~e   94 (138)
                      ..|+-+....|...+.+|..+|..|+..++.....+++..+++.|..++.++++.+|+.++.++.|+...+.+....+++
T Consensus       302 ~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~  381 (530)
T 1wa5_B          302 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID  381 (530)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34455555678899999999999999756777777777789999999999999999999999999999888888888999


Q ss_pred             hhHHHHHHHhhccccHHHHHHHHHHHHHHHhC
Q psy4702          95 TELMEILMALTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus        95 s~~leiL~~~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      .+++..|..+.+.+..+++..|..+|..+...
T Consensus       382 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~  413 (530)
T 1wa5_B          382 ANLIPPLVKLLEVAEYKTKKEACWAISNASSG  413 (530)
T ss_dssp             TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence            99999999998765448888888888776543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=98.01  E-value=3.8e-05  Score=63.99  Aligned_cols=112  Identities=13%  Similarity=0.152  Sum_probs=94.9

Q ss_pred             hhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCC-CcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHP-DVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        15 klLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~-~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      ..|+-+....+..++..|.++|+.|+..++.....+++...++.|..++.++ ++.+|..++.++.|+...+.+....++
T Consensus       289 ~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~  368 (528)
T 4b8j_A          289 PRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI  368 (528)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4455556667889999999999999986677788888878999999999999 999999999999999988888888999


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHHHHHhC
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      +.+++..|..+.+..+.++++.|..+|..+...
T Consensus       369 ~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          369 NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            999999999998776447788888887766544

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=98.01  E-value=5.2e-05  Score=64.31  Aligned_cols=110  Identities=18%  Similarity=0.224  Sum_probs=92.2

Q ss_pred             hhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhh
Q psy4702          16 FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLST   95 (138)
Q Consensus        16 lLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es   95 (138)
                      ++-+|...++..++..|++||.-|.+.++..++.|++...++.|..++.++++++|..++-++.|+...+.+....+.+.
T Consensus       105 LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~  184 (510)
T 3ul1_B          105 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH  184 (510)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence            34456677889999999999999977678899999997799999999999999999999999999998888888999999


Q ss_pred             hHHHHHHHhhccccH-----HHHHHHHHHHHHHHh
Q psy4702          96 ELMEILMALTLLEGE-----EVRKLALQALAKGEE  125 (138)
Q Consensus        96 ~~leiL~~~~k~~~~-----~v~~~a~eaLk~~~~  125 (138)
                      |+++.|..+.+..+.     .++..+..+|..+..
T Consensus       185 G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  219 (510)
T 3ul1_B          185 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  219 (510)
T ss_dssp             TCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             CChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence            999999999876431     456666666665543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=97.99  E-value=2.8e-05  Score=65.98  Aligned_cols=109  Identities=16%  Similarity=0.210  Sum_probs=92.5

Q ss_pred             hhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhh
Q psy4702          15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLS   94 (138)
Q Consensus        15 klLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~e   94 (138)
                      ..|+-|....|...+..|..+|.-+++.++.....+++...++.|..|+.++++++|..++.++.|+...+.+....+++
T Consensus       296 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~  375 (529)
T 3tpo_A          296 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN  375 (529)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHh
Confidence            34566667789999999999999887657888888888779999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhccccHHHHHHHHHHHHHH
Q psy4702          95 TELMEILMALTLLEGEEVRKLALQALAKG  123 (138)
Q Consensus        95 s~~leiL~~~~k~~~~~v~~~a~eaLk~~  123 (138)
                      .|++..|..+.+.+..+++..|..||.-+
T Consensus       376 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl  404 (529)
T 3tpo_A          376 HGLVPFLVGVLSKADFKTQKAAAWAITNY  404 (529)
T ss_dssp             TTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            99999999998876546666666666433

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=97.96  E-value=2.4e-05  Score=65.73  Aligned_cols=109  Identities=12%  Similarity=0.033  Sum_probs=90.3

Q ss_pred             hhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhh
Q psy4702          17 LFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTE   96 (138)
Q Consensus        17 Lvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~   96 (138)
                      ++-+-..+|+..+..|+.+|.-|+..++..-..|.+..+++.|..++.++++++|..++-.++|+...+.+.-..+++.|
T Consensus         7 lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G   86 (457)
T 1xm9_A            7 AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQN   86 (457)
T ss_dssp             HHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence            44444456788999999999999874455555777788999999999999999999999999999987788889999999


Q ss_pred             HHHHHHHhhccccH-HHHHHHHHHHHHHHh
Q psy4702          97 LMEILMALTLLEGE-EVRKLALQALAKGEE  125 (138)
Q Consensus        97 ~leiL~~~~k~~~~-~v~~~a~eaLk~~~~  125 (138)
                      ++..|..+.+.+.+ ++.+.|..||.-+-.
T Consensus        87 ~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~  116 (457)
T 1xm9_A           87 GIREAVSLLRRTGNAEIQKQLTGLLWNLSS  116 (457)
T ss_dssp             CHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHhhCCCHHHHHHHHHHHHHHhc
Confidence            99999999985444 888888888865543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=97.96  E-value=3.9e-05  Score=66.37  Aligned_cols=106  Identities=17%  Similarity=0.124  Sum_probs=88.0

Q ss_pred             hhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhH
Q psy4702          18 FLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTEL   97 (138)
Q Consensus        18 vll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~   97 (138)
                      -+|...+|..+++.|+++|..|+. ++.....|.+...++.|..++.++++.+|..++-++.|+...+.+....+++.|+
T Consensus        63 ~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~  141 (644)
T 2z6h_A           63 RTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG  141 (644)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHTT-SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCC
Confidence            345556799999999999999998 6777777777889999999999999999999999999999877677788889999


Q ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          98 MEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        98 leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      +..|..+.+.+..++...+..||..+.
T Consensus       142 i~~Lv~lL~~~~~~~~~~a~~~L~~La  168 (644)
T 2z6h_A          142 LQKMVALLNKTNVKFLAITTDCLQILA  168 (644)
T ss_dssp             HHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence            999999988754366666666665543

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.89  E-value=6.4e-05  Score=59.87  Aligned_cols=107  Identities=12%  Similarity=-0.006  Sum_probs=84.5

Q ss_pred             hhhhcCCCCH--HHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhh
Q psy4702          17 LFLLTCEEDT--ETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLS   94 (138)
Q Consensus        17 Lvll~~eED~--~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~e   94 (138)
                      ++-+-..+|+  ..+..|++++..|+.-++..-..|.+..+++.|..|+.++++++|..++-.++|+...+.+.-..+.+
T Consensus        13 lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~   92 (233)
T 3tt9_A           13 AVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAE   92 (233)
T ss_dssp             HHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            4433344444  78888888999998645667677777789999999999999999999999999998877788888999


Q ss_pred             hhHHHHHHHhhccccH-HHHHHHHHHHHHH
Q psy4702          95 TELMEILMALTLLEGE-EVRKLALQALAKG  123 (138)
Q Consensus        95 s~~leiL~~~~k~~~~-~v~~~a~eaLk~~  123 (138)
                      .|++..|..+.+.+.. ++.+.|..+|--+
T Consensus        93 ~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL  122 (233)
T 3tt9_A           93 LNGVPRLLQVLKQTRDLETKKQITGLLWNL  122 (233)
T ss_dssp             TTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence            9999999999875433 6666666555443

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=97.81  E-value=0.00019  Score=58.42  Aligned_cols=111  Identities=11%  Similarity=0.042  Sum_probs=90.8

Q ss_pred             hhhhhh-hcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcC-CCcccchhhhhhhhhhhhcChHHHHH
Q psy4702          14 VRFLFL-LTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAH-PDVGVQHRALVIVGNILSAGKELAER   91 (138)
Q Consensus        14 lklLvl-l~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~-~~~~lqHRG~viv~Nmi~a~~e~a~k   91 (138)
                      +..|+- |-...|...|..|+-+|+.++..+|.+-..+++..+++.|..|+.+ +++.++-..+..+.|++.......+.
T Consensus        83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~  162 (296)
T 1xqr_A           83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ  162 (296)
T ss_dssp             HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            345555 5567889999999999999987567666667778899999999985 58899999999999999888888889


Q ss_pred             HhhhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          92 VLSTELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        92 l~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      +.+.|++..|..+.+.++.+++..|.-+|.-+.
T Consensus       163 ~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~  195 (296)
T 1xqr_A          163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL  195 (296)
T ss_dssp             HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            999999999999988765477777777776543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=97.79  E-value=8.1e-05  Score=66.89  Aligned_cols=104  Identities=16%  Similarity=0.137  Sum_probs=87.8

Q ss_pred             hhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHH
Q psy4702          19 LLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELM   98 (138)
Q Consensus        19 ll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~l   98 (138)
                      +|...+|..+|+.|.++|..|+. ++.....|.+...++.|..++.++++.+|+-++-++.|+...+.+....+++.|++
T Consensus       200 ~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v  278 (780)
T 2z6g_A          200 TMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGL  278 (780)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCH
Confidence            45556799999999999999998 57666667667899999999999999999999999999998877777888899999


Q ss_pred             HHHHHhhccccHHHHHHHHHHHHHH
Q psy4702          99 EILMALTLLEGEEVRKLALQALAKG  123 (138)
Q Consensus        99 eiL~~~~k~~~~~v~~~a~eaLk~~  123 (138)
                      ..|..+.+.+..++.+.+..||..+
T Consensus       279 ~~Lv~lL~~~~~~v~~~a~~aL~~L  303 (780)
T 2z6g_A          279 QKMVALLNKTNVKFLAITTDCLQIL  303 (780)
T ss_dssp             HHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            9999998875437777777777644

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=97.78  E-value=0.00015  Score=60.32  Aligned_cols=100  Identities=15%  Similarity=0.083  Sum_probs=88.3

Q ss_pred             HHHHhhhhhhhhhcc---CCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHH
Q psy4702          27 ETACAAAGALAMLTS---VSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMA  103 (138)
Q Consensus        27 ~tr~AA~GALAmLT~---~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~  103 (138)
                      ..+..|.|+|..|++   .++.....|.+...+..|..|+.+++.++|-.++-++.|+...+.+..+.+++.|++..|..
T Consensus       233 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~  312 (354)
T 3nmw_A          233 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN  312 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHH
Confidence            578889999999985   36777777777778999999999999999999999999998778888899999999999999


Q ss_pred             hhccccHHHHHHHHHHHHHHHhC
Q psy4702         104 LTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus       104 ~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      +.+..+.++++.|..+|.-+...
T Consensus       313 LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          313 LIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             TTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHhCCCHHHHHHHHHHHHHHHcC
Confidence            98776558899999999988865

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=97.67  E-value=0.00025  Score=61.27  Aligned_cols=101  Identities=15%  Similarity=0.079  Sum_probs=89.1

Q ss_pred             HHHHhhhhhhhhhcc---CCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHH
Q psy4702          27 ETACAAAGALAMLTS---VSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMA  103 (138)
Q Consensus        27 ~tr~AA~GALAmLT~---~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~  103 (138)
                      ..+..|.|+|..|++   .++.....|.+...++.|..|+.+++.++|-.++-++.|+...+.+....+++.|++..|..
T Consensus       349 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~  428 (458)
T 3nmz_A          349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN  428 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence            578889999999984   36887777777778999999999999999999999999998888888899999999999999


Q ss_pred             hhccccHHHHHHHHHHHHHHHhCC
Q psy4702         104 LTLLEGEEVRKLALQALAKGEEYG  127 (138)
Q Consensus       104 ~~k~~~~~v~~~a~eaLk~~~~~g  127 (138)
                      +.+..+.++++.|..+|.-+....
T Consensus       429 LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          429 LIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             TTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHhCCCHHHHHHHHHHHHHHHcCC
Confidence            987655588999999999988765

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=97.67  E-value=0.00018  Score=66.59  Aligned_cols=105  Identities=18%  Similarity=0.132  Sum_probs=87.9

Q ss_pred             hhcCC-CCHHHHHhhhhhhhhhccCCHHHHhhhhh-ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcCh----------
Q psy4702          19 LLTCE-EDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGK----------   86 (138)
Q Consensus        19 ll~~e-ED~~tr~AA~GALAmLT~~~~~~c~~I~~-~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~----------   86 (138)
                      +|+.. .|.+.+.-|.++|+.||. ++.++..+.. ...+..|..|+.++++.+||-++.++.|+..++.          
T Consensus       385 lL~~~~~d~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~  463 (810)
T 3now_A          385 FLIKPGKDKDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIE  463 (810)
T ss_dssp             HHHCSSCCSSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGG
T ss_pred             HhcCCCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHH
Confidence            33443 377899999999999998 8999999998 8899999999999999999999999999987431          


Q ss_pred             -------------------HH---HHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          87 -------------------EL---AERVLSTELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        87 -------------------e~---a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                                         .+   .+.++++|++..|..+.+.+...+++.|..+|--+.
T Consensus       464 la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA  523 (810)
T 3now_A          464 LAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC  523 (810)
T ss_dssp             GTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence                               12   267899999999999998765588888888876654

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=97.62  E-value=0.00034  Score=62.56  Aligned_cols=109  Identities=14%  Similarity=0.077  Sum_probs=88.8

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhc-ChHHHHHH
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSA-GKELAERV   92 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a-~~e~a~kl   92 (138)
                      +..+|-+-...|+..+..|+.+|..|+.-++..-..|.+..+++.|..|+.++++++|..++-.++|+... +.+.-..+
T Consensus        50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I  129 (584)
T 3l6x_A           50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI  129 (584)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            45566666778899999999999999964566666677788999999999999999999999999999875 57888889


Q ss_pred             hhhhHHHHHHHhhccccH-HHHHHHHHHHHH
Q psy4702          93 LSTELMEILMALTLLEGE-EVRKLALQALAK  122 (138)
Q Consensus        93 ~es~~leiL~~~~k~~~~-~v~~~a~eaLk~  122 (138)
                      ++.|++..|..+.+.+.. ++.+.|..||--
T Consensus       130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~n  160 (584)
T 3l6x_A          130 KNCDGVPALVRLLRKARDMDLTEVITGTLWN  160 (584)
T ss_dssp             HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999999999886433 556666655543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=97.43  E-value=0.00063  Score=57.10  Aligned_cols=91  Identities=22%  Similarity=0.181  Sum_probs=77.8

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhc-CCCcccchhhhhhhhhhhhcChHHHHHH
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILA-HPDVGVQHRALVIVGNILSAGKELAERV   92 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~-~~~~~lqHRG~viv~Nmi~a~~e~a~kl   92 (138)
                      +..|+-+-..+|+..+..|.+||..|+..++.....|.+..+++.|..|+. ++++++|..++-++.|+... .+....+
T Consensus        46 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i  124 (457)
T 1xm9_A           46 ICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEEL  124 (457)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHH
Confidence            345666666789999999999999999844888888888889999999999 89999999999999999876 4566778


Q ss_pred             hhhhHHHHHHHhhc
Q psy4702          93 LSTELMEILMALTL  106 (138)
Q Consensus        93 ~es~~leiL~~~~k  106 (138)
                      ++ |++..|..+..
T Consensus       125 ~~-g~i~~Lv~ll~  137 (457)
T 1xm9_A          125 IA-DALPVLADRVI  137 (457)
T ss_dssp             HH-HHHHHHHHHTT
T ss_pred             Hh-ccHHHHHHHHh
Confidence            88 99999999983

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=97.40  E-value=0.0014  Score=54.32  Aligned_cols=105  Identities=11%  Similarity=-0.007  Sum_probs=84.5

Q ss_pred             hcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh-ccHHHHHHHHhcCCCcc----cchhhhhhhhhhhh---cChHHHHH
Q psy4702          20 LTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVG----VQHRALVIVGNILS---AGKELAER   91 (138)
Q Consensus        20 l~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~-~~wleil~~L~~~~~~~----lqHRG~viv~Nmi~---a~~e~a~k   91 (138)
                      |....|..++..|.+||.-|++..+.....|.. ...++.|..|+.++++.    ++..++-+++|+-.   .+.+.-+.
T Consensus       179 L~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~  258 (354)
T 3nmw_A          179 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI  258 (354)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence            345568889999999999998745666778875 88999999999987764    88889999999976   56777788


Q ss_pred             HhhhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          92 VLSTELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        92 l~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      +++.|++..|..+.+....++++.|..+|--+.
T Consensus       259 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa  291 (354)
T 3nmw_A          259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS  291 (354)
T ss_dssp             HHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence            999999999999988654477777777765543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.00089  Score=62.11  Aligned_cols=112  Identities=18%  Similarity=0.143  Sum_probs=94.2

Q ss_pred             hhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHH-hhhhh---cc---HHHHHHHHhcCCCcccchhhhhhhhhhhhcChH
Q psy4702          15 RFLFLLTCEEDTETACAAAGALAMLTSVSTPVC-SMLLE---KN---WVDIFKQILAHPDVGVQHRALVIVGNILSAGKE   87 (138)
Q Consensus        15 klLvll~~eED~~tr~AA~GALAmLT~~~~~~c-~~I~~---~~---wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e   87 (138)
                      ..+.-|...+....|+||.-+++-|++ ++... .++++   ++   .+++|..|+..+|+++|.-+.-.+.|+..++..
T Consensus       609 ~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~  687 (778)
T 3opb_A          609 STIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL  687 (778)
T ss_dssp             HHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH
Confidence            345555566788999999999999998 68765 57775   22   589999999999999999999999999888999


Q ss_pred             HHHHHhhh-hHHHHHHHhhcc--ccHHHHHHHHHHHHHHHhCC
Q psy4702          88 LAERVLST-ELMEILMALTLL--EGEEVRKLALQALAKGEEYG  127 (138)
Q Consensus        88 ~a~kl~es-~~leiL~~~~k~--~~~~v~~~a~eaLk~~~~~g  127 (138)
                      +++.+++. ++++.|..+.+.  ++.+++..+.-++.-+.++.
T Consensus       688 ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~  730 (778)
T 3opb_A          688 IAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI  730 (778)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence            99999987 799999999888  44588899999998888754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=97.19  E-value=0.0014  Score=58.60  Aligned_cols=110  Identities=18%  Similarity=0.122  Sum_probs=89.8

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCC--------cccchhhhhhhhhhhhcC
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPD--------VGVQHRALVIVGNILSAG   85 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~--------~~lqHRG~viv~Nmi~a~   85 (138)
                      +..|+-|-...|.+.+.+|.+||..|+. ++.... ++....+.-|..|+.+++        ++++.-.+-.++|++..+
T Consensus       357 lp~Lv~LL~s~~~~v~~~A~~aL~nLs~-~~~~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~  434 (584)
T 3l6x_A          357 LSAIADLLTNEHERVVKAASGALRNLAV-DARNKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN  434 (584)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHT-TCSCHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhC-ChhHHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC
Confidence            6677777788899999999999999997 565544 447678888999998873        456666777899999999


Q ss_pred             hHHHHHHhhhhHHHHHHHhhccc--cHHHHHHHHHHHHHHHh
Q psy4702          86 KELAERVLSTELMEILMALTLLE--GEEVRKLALQALAKGEE  125 (138)
Q Consensus        86 ~e~a~kl~es~~leiL~~~~k~~--~~~v~~~a~eaLk~~~~  125 (138)
                      .+-++.+++.|++..|..+.+..  ...+.+.|-.+|.-+..
T Consensus       435 ~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          435 LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence            99999999999999999999875  23888888888876654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=97.15  E-value=0.0032  Score=54.29  Aligned_cols=105  Identities=11%  Similarity=-0.007  Sum_probs=84.3

Q ss_pred             hcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh-ccHHHHHHHHhcCCCcc----cchhhhhhhhhhhh---cChHHHHH
Q psy4702          20 LTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVG----VQHRALVIVGNILS---AGKELAER   91 (138)
Q Consensus        20 l~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~-~~wleil~~L~~~~~~~----lqHRG~viv~Nmi~---a~~e~a~k   91 (138)
                      |....|..++..|.+||.-|+...+.....|.. ...++.|..|+.++++.    ++..++-+++|+-.   .+.+.-+.
T Consensus       295 Ll~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~  374 (458)
T 3nmz_A          295 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI  374 (458)
T ss_dssp             HTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence            455668889999999999998734566777875 88999999999987764    89999999999976   57777788


Q ss_pred             HhhhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          92 VLSTELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        92 l~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      +++.|++..|..+.+....++++.|..+|--+.
T Consensus       375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa  407 (458)
T 3nmz_A          375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS  407 (458)
T ss_dssp             HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            999999999999988654466677766665443

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=96.80  E-value=0.0026  Score=50.52  Aligned_cols=103  Identities=16%  Similarity=0.126  Sum_probs=78.7

Q ss_pred             hhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhc----------------CCCcccchhhhhhhhhhh
Q psy4702          19 LLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILA----------------HPDVGVQHRALVIVGNIL   82 (138)
Q Consensus        19 ll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~----------------~~~~~lqHRG~viv~Nmi   82 (138)
                      +|....|..++..|+|+|--|++ ++.....|.+. .+..|..+..                ..++++++-..-|++|+-
T Consensus       102 lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLs  179 (233)
T 3tt9_A          102 VLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMS  179 (233)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHT
T ss_pred             HHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHh
Confidence            44445788999999999999998 68888777763 5666655442                136689999999999999


Q ss_pred             hcChHHHHHHhhh-hHHHHHHHhhccc----c-H-HHHHHHHHHHHHH
Q psy4702          83 SAGKELAERVLST-ELMEILMALTLLE----G-E-EVRKLALQALAKG  123 (138)
Q Consensus        83 ~a~~e~a~kl~es-~~leiL~~~~k~~----~-~-~v~~~a~eaLk~~  123 (138)
                      .++.+.-+.+.+. |+++.|..+.+..    + . +.++-++-+|.-+
T Consensus       180 s~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nL  227 (233)
T 3tt9_A          180 SAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL  227 (233)
T ss_dssp             TSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Confidence            8887877888876 5779999998763    1 2 7888888887643

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=96.09  E-value=0.021  Score=41.32  Aligned_cols=98  Identities=21%  Similarity=0.144  Sum_probs=51.3

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh----------------------ccHHHHHHHHhcCCCcccc
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE----------------------KNWVDIFKQILAHPDVGVQ   71 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~----------------------~~wleil~~L~~~~~~~lq   71 (138)
                      +..|+-+...+|+..|.+|..+|+.+..  +.+...+..                      +..++.|..++.++++.+|
T Consensus        78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr  155 (201)
T 3ltj_A           78 VEPLIKALKDEDGWVRQSAAVALGQIGD--ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVR  155 (201)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc--HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHH
Confidence            3444445556777788888877776543  211111111                      1233344444444444454


Q ss_pred             hhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          72 HRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        72 HRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      ...+-.+.++           -..+.++.|..+.+.++..|...|.++|..+.
T Consensus       156 ~~A~~aL~~~-----------~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          156 QSAADALGEI-----------GGERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHHHHH-----------CSHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHh-----------CchhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            4444444443           22345566666654443477788888877654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=96.05  E-value=0.026  Score=41.13  Aligned_cols=99  Identities=21%  Similarity=0.143  Sum_probs=52.7

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh----------------------ccHHHHHHHHhcCCCcccc
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE----------------------KNWVDIFKQILAHPDVGVQ   71 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~----------------------~~wleil~~L~~~~~~~lq   71 (138)
                      +..|+-+...+|+..|.+|.-+|+.+..  +.....+.+                      +..++.|..++.|+++.+|
T Consensus        83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr  160 (211)
T 3ltm_A           83 VEPLIKALKDEDGWVRQSAAVALGQIGD--ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVR  160 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHH
Confidence            3445555566777788888777776543  211111111                      1233444444445555554


Q ss_pred             hhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHh
Q psy4702          72 HRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEE  125 (138)
Q Consensus        72 HRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~  125 (138)
                      ...+-.+.++           -..+.++.|..+.+.++..|++.|.++|...-.
T Consensus       161 ~~a~~aL~~~-----------~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          161 QSAADALGEI-----------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS  203 (211)
T ss_dssp             HHHHHHHHHH-----------CSHHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHh-----------CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            4444444443           234566677777665444888888888876654

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=95.49  E-value=0.031  Score=38.61  Aligned_cols=86  Identities=19%  Similarity=0.075  Sum_probs=45.0

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      +..|+-+..++|...|.+|.-+|+.+..  +         ..++.|..++.|+++.+|+..+-.+.++-           
T Consensus        44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-----------  101 (131)
T 1te4_A           44 FEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIG-----------  101 (131)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence            3444444444555566666655555432  2         22344444455666666665555554432           


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHH
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALA  121 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk  121 (138)
                      ..+.++.|..+.+.++..|+..|.++|.
T Consensus       102 ~~~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A          102 GERVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            2344566666654333367777777664

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=94.91  E-value=0.16  Score=36.46  Aligned_cols=101  Identities=26%  Similarity=0.129  Sum_probs=57.8

Q ss_pred             ChhhhhhhhcCCCCHHHHHhhhhhhhhhcc-------------CCHHH----Hhhhhh---ccHHHHHHHHhcCCCcccc
Q psy4702          12 SQVRFLFLLTCEEDTETACAAAGALAMLTS-------------VSTPV----CSMLLE---KNWVDIFKQILAHPDVGVQ   71 (138)
Q Consensus        12 ~RlklLvll~~eED~~tr~AA~GALAmLT~-------------~~~~~----c~~I~~---~~wleil~~L~~~~~~~lq   71 (138)
                      +-+..|+-+...+|...|.+|.-+|+.+-.             .++.+    +..+-.   +..++.|..++.++++.+|
T Consensus        45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr  124 (201)
T 3ltj_A           45 RAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVR  124 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHH
Confidence            345556666677899999999999887642             01111    111111   2345555555555555555


Q ss_pred             hhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHH
Q psy4702          72 HRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKG  123 (138)
Q Consensus        72 HRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~  123 (138)
                      ...+-.+.++           -..+.++.|..+.+.++..|+..|.++|..+
T Consensus       125 ~~a~~aL~~~-----------~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  165 (201)
T 3ltj_A          125 IAAAFALGEI-----------GDERAVEPLIKALKDEDGWVRQSAADALGEI  165 (201)
T ss_dssp             HHHHHHHHHH-----------TCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-----------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            5555554443           2345666677766554337777777777654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=94.73  E-value=0.18  Score=36.51  Aligned_cols=99  Identities=25%  Similarity=0.139  Sum_probs=57.3

Q ss_pred             ChhhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhh-------------------hhh---ccHHHHHHHHhcCCCcc
Q psy4702          12 SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSM-------------------LLE---KNWVDIFKQILAHPDVG   69 (138)
Q Consensus        12 ~RlklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~-------------------I~~---~~wleil~~L~~~~~~~   69 (138)
                      +-+..|+-+...+|...|.+|.-+|+.+..  +.....                   +-.   +..++.|..++.|+++.
T Consensus        50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~  127 (211)
T 3ltm_A           50 RAVEPLIKALKDEDAWVRRAAADALGQIGD--ERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWF  127 (211)
T ss_dssp             GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH
T ss_pred             cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHH
Confidence            344556666667899999999999987643  211111                   111   23455555555566666


Q ss_pred             cchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHH
Q psy4702          70 VQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKG  123 (138)
Q Consensus        70 lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~  123 (138)
                      +|+..+-.+.++-           ..+.+..|..+.+.++..|+..|.++|..+
T Consensus       128 vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  170 (211)
T 3ltm_A          128 VRIAAAFALGEIG-----------DERAVEPLIKALKDEDGWVRQSAADALGEI  170 (211)
T ss_dssp             HHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            6555555555541           234566666666444336777777777654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=94.65  E-value=0.21  Score=40.85  Aligned_cols=102  Identities=19%  Similarity=0.124  Sum_probs=55.8

Q ss_pred             hhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhh
Q psy4702          16 FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLST   95 (138)
Q Consensus        16 lLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es   95 (138)
                      ++.-+...+|...|.+|.-+|..+....+.   .-+.+..+.++..++.+++...|+-++-++.++...-++   . ...
T Consensus        91 ~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~---~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~---~-~~~  163 (588)
T 1b3u_A           91 PLESLATVEETVVRDKAVESLRAISHEHSP---SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS---A-VKA  163 (588)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHTTSCH---HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH---H-HHH
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH---H-HHH
Confidence            333445678889999999999888763322   111134566666666666666666666555555433221   1 123


Q ss_pred             hHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          96 ELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        96 ~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      .++.+|..+.+.+...|+..|.++|..+.
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~  192 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFA  192 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            34555554443332255555555555443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=94.51  E-value=0.053  Score=48.08  Aligned_cols=83  Identities=16%  Similarity=0.266  Sum_probs=68.3

Q ss_pred             CCCCHHHHHhhhhhhhhhccCCHHHHhhhhh-ccHHHHH-HHHhcCCCcccchhhhhhhhhhhh-cChHHHHHHhhhhHH
Q psy4702          22 CEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIF-KQILAHPDVGVQHRALVIVGNILS-AGKELAERVLSTELM   98 (138)
Q Consensus        22 ~eED~~tr~AA~GALAmLT~~~~~~c~~I~~-~~wleil-~~L~~~~~~~lqHRG~viv~Nmi~-a~~e~a~kl~es~~l   98 (138)
                      ...|...|..|.+||+-|.+ ++. +++.+. ++.+..+ ..++.|++.++|.-++-.++|+.. .+.+++..++..|++
T Consensus        44 ~S~~~~~r~~A~~al~~l~~-~~~-~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il  121 (684)
T 4gmo_A           44 KSPDAKSRTTAAGAIANIVQ-DAK-CRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVL  121 (684)
T ss_dssp             SSSCCSHHHHHHHHHHHHTT-SHH-HHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHH
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CcH-HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChH
Confidence            35788899999999999987 555 555555 8888765 567899999999999999999975 467999999999998


Q ss_pred             HHHHHhhc
Q psy4702          99 EILMALTL  106 (138)
Q Consensus        99 eiL~~~~k  106 (138)
                      --|..+.+
T Consensus       122 ~~L~~~l~  129 (684)
T 4gmo_A          122 TAIEHAAK  129 (684)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877754

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=94.33  E-value=0.19  Score=41.11  Aligned_cols=98  Identities=16%  Similarity=0.136  Sum_probs=61.5

Q ss_pred             cCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHH
Q psy4702          21 TCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEI  100 (138)
Q Consensus        21 ~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~lei  100 (138)
                      ...++..+|.+|..++..+...   +-...+.+..++.|..++.|+++++|...+-++..+...-+   ..+....++..
T Consensus       489 ~~~~~~~~R~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~---~~~~~~~~~p~  562 (588)
T 1b3u_A          489 SGDPNYLHRMTTLFCINVLSEV---CGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD---NSTLQSEVKPI  562 (588)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHH---HHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC---HHHHHHHHHHH
T ss_pred             hhCCCHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc---hhhhHHHHHHH
Confidence            3344555666655555554331   11111114567788888889999999888888888875432   23334556677


Q ss_pred             HHHhhccccHHHHHHHHHHHHHHH
Q psy4702         101 LMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus       101 L~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      |..+...++..|++.|.+||..+.
T Consensus       563 l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          563 LEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCCchhHHHHHHHHHHHhh
Confidence            777644333499999999998764

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=93.70  E-value=0.28  Score=37.05  Aligned_cols=60  Identities=17%  Similarity=0.218  Sum_probs=31.8

Q ss_pred             HHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHH
Q psy4702          55 WVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKG  123 (138)
Q Consensus        55 wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~  123 (138)
                      .++.|..++.|+++.+|+..+..+.++-..+         .+.++.|..+.+.++..|...|..+|...
T Consensus       160 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~  219 (280)
T 1oyz_A          160 TIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSYR  219 (280)
T ss_dssp             CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            4556666666666666666666665542112         23344455554433335666666665543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=92.99  E-value=0.37  Score=36.39  Aligned_cols=58  Identities=16%  Similarity=0.110  Sum_probs=39.6

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNIL   82 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi   82 (138)
                      +..|+-+...+|+..|.+|.-+|.-+.+  +.         -++.|..++.++++.+|..++..+.++-
T Consensus        25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~~---------~~~~L~~~l~d~~~~vR~~A~~aL~~l~   82 (280)
T 1oyz_A           25 DDELFRLLDDHNSLKRISSARVLQLRGG--QD---------AVRLAIEFCSDKNYIRRDIGAFILGQIK   82 (280)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC--HH---------HHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC--ch---------HHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            3445555566888999999998887653  32         3455666777777777777777766654

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=92.81  E-value=0.11  Score=35.71  Aligned_cols=85  Identities=19%  Similarity=0.119  Sum_probs=57.0

Q ss_pred             hhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhh
Q psy4702          16 FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLST   95 (138)
Q Consensus        16 lLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es   95 (138)
                      .++.+...+|...|.+|.-+|+.+-.  +         . ++.|..++.|+++.+|...+..+.++-.           .
T Consensus        16 ~l~~~L~~~~~~vR~~A~~~L~~~~~--~---------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~   72 (131)
T 1te4_A           16 PRGSHMADENKWVRRDVSTALSRMGD--E---------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD-----------E   72 (131)
T ss_dssp             -----CCSSCCCSSSSCCSSTTSCSS--T---------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------H
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhCc--h---------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------H
Confidence            34555567888999999999987643  2         1 4677788889999999999988887642           2


Q ss_pred             hHHHHHHHhhccccHHHHHHHHHHHHHH
Q psy4702          96 ELMEILMALTLLEGEEVRKLALQALAKG  123 (138)
Q Consensus        96 ~~leiL~~~~k~~~~~v~~~a~eaLk~~  123 (138)
                      +.++.|..+.+.++..|+..|..+|..+
T Consensus        73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~  100 (131)
T 1te4_A           73 RAVEPLIKLLEDDSGFVRSGAARSLEQI  100 (131)
T ss_dssp             HHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            3455666655443337777777777654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=92.62  E-value=0.65  Score=42.42  Aligned_cols=114  Identities=18%  Similarity=0.168  Sum_probs=91.7

Q ss_pred             ChhhhhhhhcCCCCHHHHHhhhhhhhhhccCCHH-HHhhhhh-ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHH
Q psy4702          12 SQVRFLFLLTCEEDTETACAAAGALAMLTSVSTP-VCSMLLE-KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELA   89 (138)
Q Consensus        12 ~RlklLvll~~eED~~tr~AA~GALAmLT~~~~~-~c~~I~~-~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a   89 (138)
                      +=+++|+-|-+++|+..|..|--.|..|....+. .=+.|+. +.++..|..++.++.+-+|.-++..+.++..++.++=
T Consensus       122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQ  201 (651)
T 3grl_A          122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ  201 (651)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHH
Confidence            3467777777999999999999999888776777 5666776 9999999999999999999999999999999998887


Q ss_pred             HHHhhhhHHHHHHHhhccccH----HHHHHHHHHHHHHHh
Q psy4702          90 ERVLSTELMEILMALTLLEGE----EVRKLALQALAKGEE  125 (138)
Q Consensus        90 ~kl~es~~leiL~~~~k~~~~----~v~~~a~eaLk~~~~  125 (138)
                      +-+.-.|++|.|..+-+.+..    .|++-+-..|.-+..
T Consensus       202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr  241 (651)
T 3grl_A          202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK  241 (651)
T ss_dssp             HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh
Confidence            777777999999999887532    445544444544443

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=92.05  E-value=0.28  Score=40.47  Aligned_cols=78  Identities=23%  Similarity=0.238  Sum_probs=61.9

Q ss_pred             ccHHHHHHHHhcCCCcccchhhhhhhhhhhhc-ChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHhCCCccC
Q psy4702          53 KNWVDIFKQILAHPDVGVQHRALVIVGNILSA-GKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEYGIIRR  131 (138)
Q Consensus        53 ~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a-~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~~glIk~  131 (138)
                      +.-+.+|..|+-++|+.++.|+++++-+|+.. ++..-...+ .++++-+..++|.++++|.=-|-+||+.+.+...+-|
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence            67899999999999999999999999999974 454443333 3567777888877766877788899999988765543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=90.95  E-value=0.2  Score=42.42  Aligned_cols=66  Identities=17%  Similarity=0.255  Sum_probs=57.8

Q ss_pred             CCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHHHhC-----CCcc
Q psy4702          65 HPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGEEY-----GIIR  130 (138)
Q Consensus        65 ~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~~~-----glIk  130 (138)
                      +.+..-.-|.+.-+..++..|++.+.+|++.+++..|..+....+......+-.||..+|+|     |+|+
T Consensus       129 ~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          129 SSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            34444568999999999999999999999999999999998776557789999999999999     8886

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=90.58  E-value=1  Score=39.77  Aligned_cols=102  Identities=11%  Similarity=0.079  Sum_probs=70.6

Q ss_pred             hcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh--ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhH
Q psy4702          20 LTCEEDTETACAAAGALAMLTSVSTPVCSMLLE--KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTEL   97 (138)
Q Consensus        20 l~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~--~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~   97 (138)
                      +...++...|.+|..+|..+....+   ..+..  +..++.+..++.++++++|...+-++.+++....+.-...++ ++
T Consensus       182 ~l~~~~~~vR~~A~~aL~~~~~~~~---~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l  257 (852)
T 4fdd_A          182 FFKHSSPKIRSHAVACVNQFIISRT---QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NI  257 (852)
T ss_dssp             TTTCSSHHHHHHHHHHHHTTTTTTC---HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HH
Confidence            3456788999999999986654222   22323  567777788888999999998999999998766544332222 46


Q ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHHh
Q psy4702          98 MEILMALTLLEGEEVRKLALQALAKGEE  125 (138)
Q Consensus        98 leiL~~~~k~~~~~v~~~a~eaLk~~~~  125 (138)
                      ++.+..+.+..+..|+..|.+++..+.+
T Consensus       258 ~~~l~~~~~~~~~~vr~~a~e~l~~l~~  285 (852)
T 4fdd_A          258 VEYMLQRTQDQDENVALEACEFWLTLAE  285 (852)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence            7777777665444777888877776654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=90.36  E-value=0.6  Score=41.20  Aligned_cols=105  Identities=15%  Similarity=0.025  Sum_probs=70.0

Q ss_pred             hcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHH
Q psy4702          20 LTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELME   99 (138)
Q Consensus        20 l~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~le   99 (138)
                      +...+|...|.||.-+|..+.+..+......+ +..+..+..++.|+++.+|...+.++.++...-..-...-.-.+++.
T Consensus       367 ~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~  445 (852)
T 4fdd_A          367 LLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT  445 (852)
T ss_dssp             HHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            33457899999999999999874333222111 67888999999999999999999999988643111000111234566


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHh
Q psy4702         100 ILMALTLLEGEEVRKLALQALAKGEE  125 (138)
Q Consensus       100 iL~~~~k~~~~~v~~~a~eaLk~~~~  125 (138)
                      .|....+.+...|++.|..+|..+.+
T Consensus       446 ~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          446 ELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            66665544433788888888876653

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=90.35  E-value=0.66  Score=34.68  Aligned_cols=101  Identities=11%  Similarity=-0.027  Sum_probs=67.8

Q ss_pred             hcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh---ccHHHHHHHHhc-CCCcccchhhhhhhhhhhhcChHHHHHHhhh
Q psy4702          20 LTCEEDTETACAAAGALAMLTSVSTPVCSMLLE---KNWVDIFKQILA-HPDVGVQHRALVIVGNILSAGKELAERVLST   95 (138)
Q Consensus        20 l~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~---~~wleil~~L~~-~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es   95 (138)
                      ..+..|...|++|.-+|..+.+.    |.++..   .+-+..|..++. +++..++.-++-++.-+...-+...+.. -.
T Consensus        23 ~l~s~~w~~R~~a~~~L~~l~~~----~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~-~~   97 (242)
T 2qk2_A           23 KLEEKKWTLRKESLEVLEKLLTD----HPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY-AS   97 (242)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHH----CSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH-HH
T ss_pred             hhccCCHHHHHHHHHHHHHHHcc----CCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH-HH
Confidence            34578999999999999888652    223322   566777788885 9999999999999988875322111111 12


Q ss_pred             hHHHHHHHhhccccHHHHHHHHHHHHHHHh
Q psy4702          96 ELMEILMALTLLEGEEVRKLALQALAKGEE  125 (138)
Q Consensus        96 ~~leiL~~~~k~~~~~v~~~a~eaLk~~~~  125 (138)
                      .++..|....+.++..|++.|.+||..+.+
T Consensus        98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~  127 (242)
T 2qk2_A           98 ACVPSLLEKFKEKKPNVVTALREAIDAIYA  127 (242)
T ss_dssp             HHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            244555555444433889999999998876

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=90.18  E-value=1.3  Score=33.01  Aligned_cols=99  Identities=16%  Similarity=0.145  Sum_probs=69.8

Q ss_pred             hhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh-ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcC-hH-HHHHHh
Q psy4702          17 LFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGVQHRALVIVGNILSAG-KE-LAERVL   93 (138)
Q Consensus        17 Lvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~-~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~-~e-~a~kl~   93 (138)
                      ++-..++.+..+|.+|..||..+... .       . +..++.|...+.|+++.+|--.+-.+..++.+. .+ ......
T Consensus       103 ll~~l~d~~~~vr~~a~~aL~~~~~~-~-------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l  174 (242)
T 2qk2_A          103 LLEKFKEKKPNVVTALREAIDAIYAS-T-------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL  174 (242)
T ss_dssp             HHHGGGCCCHHHHHHHHHHHHHHHTT-S-------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHc-C-------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence            33344556788999999999877552 1       2 457778888889999999888888888876542 22 222322


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                       ..++..|..+...+..+|++.|.+|+..+.
T Consensus       175 -~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~  204 (242)
T 2qk2_A          175 -KLLTTSLVKTLNEPDPTVRDSSAEALGTLI  204 (242)
T ss_dssp             -HHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence             257778887775554489999999987765

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=89.68  E-value=0.82  Score=37.46  Aligned_cols=96  Identities=15%  Similarity=0.134  Sum_probs=60.7

Q ss_pred             CCCHHHHHhhhhhhhhhccCCHHHHh-hhhh--ccHHHHHHHHhc-CCCcccchhhhhhhhhhhhcChHHHHHHhhhhHH
Q psy4702          23 EEDTETACAAAGALAMLTSVSTPVCS-MLLE--KNWVDIFKQILA-HPDVGVQHRALVIVGNILSAGKELAERVLSTELM   98 (138)
Q Consensus        23 eED~~tr~AA~GALAmLT~~~~~~c~-~I~~--~~wleil~~L~~-~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~l   98 (138)
                      ..+.-+|.|++..+--++.. -  .+ +-++  .+-+..+..+.. ..|+|..||.+|.+.|++..++++.+-...-|+-
T Consensus       202 ~~nknl~iA~ATl~~NlAv~-~--~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~  278 (304)
T 3ebb_A          202 GSNKNIHIALATLALNYSVC-F--HKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVD  278 (304)
T ss_dssp             SCCHHHHHHHHHHHHHHHHH-H--HHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             CCChhHHHHHHHHHHHHHHH-H--hhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHH
Confidence            35667777777766555431 0  00 0011  333444444443 4688999999999999999888766555455666


Q ss_pred             HHHHHhhccccH-HHHHHHHHHHH
Q psy4702          99 EILMALTLLEGE-EVRKLALQALA  121 (138)
Q Consensus        99 eiL~~~~k~~~~-~v~~~a~eaLk  121 (138)
                      .++..+.+.+.+ +|.++++.-|+
T Consensus       279 ~~v~~~~~~~~~~kv~~~~~~~~~  302 (304)
T 3ebb_A          279 SQIKKYSSVSEPAKVSECCRFILN  302 (304)
T ss_dssp             HHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCchhHHHHHHHHHH
Confidence            666666555445 89999887654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=89.20  E-value=1.4  Score=37.89  Aligned_cols=94  Identities=17%  Similarity=0.188  Sum_probs=68.6

Q ss_pred             CCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHH
Q psy4702          22 CEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEIL  101 (138)
Q Consensus        22 ~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL  101 (138)
                      ...|+..|..|--+|+.+..  +.++..+     ++.+..++.|+++.+|..++.++.++...+.+...   +.+.++.|
T Consensus        96 ~~~n~~ir~~AL~~L~~i~~--~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l  165 (591)
T 2vgl_B           96 EDPNPLIRALAVRTMGCIRV--DKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSL  165 (591)
T ss_dssp             SSSSHHHHHHHHHHHHTCCS--GGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHcCCh--HHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHH
Confidence            34677788877777777653  4444443     34567788899999999999999999886655433   35778888


Q ss_pred             HHhhccccHHHHHHHHHHHHHHHh
Q psy4702         102 MALTLLEGEEVRKLALQALAKGEE  125 (138)
Q Consensus       102 ~~~~k~~~~~v~~~a~eaLk~~~~  125 (138)
                      ..+...++..|+..|..+|..+..
T Consensus       166 ~~lL~d~d~~V~~~A~~aL~~i~~  189 (591)
T 2vgl_B          166 RDLIADSNPMVVANAVAALSEISE  189 (591)
T ss_dssp             HHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCCChhHHHHHHHHHHHHHh
Confidence            888764433888888888877654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=89.18  E-value=0.3  Score=38.62  Aligned_cols=96  Identities=21%  Similarity=0.240  Sum_probs=68.6

Q ss_pred             CHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcCh-H-HHHHHhhhhHHHHHH
Q psy4702          25 DTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGK-E-LAERVLSTELMEILM  102 (138)
Q Consensus        25 D~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~-e-~a~kl~es~~leiL~  102 (138)
                      |...|++|+.+|..|+...+   ..++ +..++.+...+.+++..+++-++.++.++..... + +.. .+ ..++..|.
T Consensus       341 ~~~~r~~a~~~L~~l~~~~~---~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l-~~~~~~l~  414 (462)
T 1ibr_B          341 DWNPCKAAGVCLMLLATCCE---DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LV-IQAMPTLI  414 (462)
T ss_dssp             CCSHHHHHHHHHHHHHHHTT---TTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TT-TTHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhcc---HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HH-HHHHHHHH
Confidence            34689999999998876332   1222 4577788888889999999999999999986432 1 111 11 45777777


Q ss_pred             HhhccccHHHHHHHHHHHHHHHhC
Q psy4702         103 ALTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus       103 ~~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      .+.+.+...|+..|..||..+.++
T Consensus       415 ~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          415 ELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHh
Confidence            776654448999999999888764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=86.78  E-value=1.9  Score=37.10  Aligned_cols=98  Identities=19%  Similarity=0.225  Sum_probs=67.3

Q ss_pred             CCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcCh-HHHHHHhhhhHHHHHH
Q psy4702          24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGK-ELAERVLSTELMEILM  102 (138)
Q Consensus        24 ED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~-e~a~kl~es~~leiL~  102 (138)
                      +|...|+||.-+|..|....+   ..++ +..++.+...+.+++..+|+.++.++.++..... +.-.... ..++..|.
T Consensus       340 ~~~~~r~~a~~~l~~l~~~~~---~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~  414 (876)
T 1qgr_A          340 DDWNPCKAAGVCLMLLATCCE---DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLI  414 (876)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHG---GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHCc---HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHH
Confidence            455789999988888865211   2222 4567777888889999999999999999987543 3222222 34666666


Q ss_pred             HhhccccHHHHHHHHHHHHHHHhC
Q psy4702         103 ALTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus       103 ~~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      ...+.+...|+..|..+|..+.++
T Consensus       415 ~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T 1qgr_A          415 ELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHh
Confidence            665544338888899998887764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=85.53  E-value=3  Score=32.75  Aligned_cols=108  Identities=17%  Similarity=0.087  Sum_probs=63.4

Q ss_pred             hhhcCCC-CHHHHHhhhhhhhhhccCCHHHHh-hhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhh
Q psy4702          18 FLLTCEE-DTETACAAAGALAMLTSVSTPVCS-MLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLST   95 (138)
Q Consensus        18 vll~~eE-D~~tr~AA~GALAmLT~~~~~~c~-~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es   95 (138)
                      -.|.+.+ +...|.+|.-++..+....+.... ..+.+--++++..+..+++++++.-.+-++.+++....+.-...+..
T Consensus       179 ~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~  258 (462)
T 1ibr_B          179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP  258 (462)
T ss_dssp             HHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTT
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444554 789999999988876542221110 00001126666777788888888777777777776543322222333


Q ss_pred             hHHHHHHHhhccccHHHHHHHHHHHHHHHh
Q psy4702          96 ELMEILMALTLLEGEEVRKLALQALAKGEE  125 (138)
Q Consensus        96 ~~leiL~~~~k~~~~~v~~~a~eaLk~~~~  125 (138)
                      ++++.+..+.+.....++..|.+.+..+.+
T Consensus       259 ~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~  288 (462)
T 1ibr_B          259 ALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (462)
T ss_dssp             THHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            677777666554433666667666655544

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=85.39  E-value=3.6  Score=35.35  Aligned_cols=106  Identities=15%  Similarity=0.069  Sum_probs=61.1

Q ss_pred             hcCCC-CHHHHHhhhhhhhhhccCCHHHHh-hhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhH
Q psy4702          20 LTCEE-DTETACAAAGALAMLTSVSTPVCS-MLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTEL   97 (138)
Q Consensus        20 l~~eE-D~~tr~AA~GALAmLT~~~~~~c~-~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~   97 (138)
                      +.+.+ +...|.+|.-+|..+..+.+.--. ....+..++.|..++.++++++++-++-++..++....+.-...+...+
T Consensus       188 l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l  267 (861)
T 2bpt_A          188 AQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL  267 (861)
T ss_dssp             HSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTH
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34443 788999999988766542221110 0000224555666777899999988888888887643322222222356


Q ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHHh
Q psy4702          98 MEILMALTLLEGEEVRKLALQALAKGEE  125 (138)
Q Consensus        98 leiL~~~~k~~~~~v~~~a~eaLk~~~~  125 (138)
                      ++.+....+..+..+...|.+.+..+.+
T Consensus       268 ~~~~~~~~~~~~~~vr~~a~~~l~~l~~  295 (861)
T 2bpt_A          268 YALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            6666655544333666666666655543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=85.18  E-value=1.1  Score=38.42  Aligned_cols=64  Identities=17%  Similarity=0.247  Sum_probs=49.1

Q ss_pred             hhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcC
Q psy4702          19 LLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAG   85 (138)
Q Consensus        19 ll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~   85 (138)
                      -+....|+..|++|+-|+.-+-..+|..+.   +..|++.|..++.|+++.++.-++..+.++...+
T Consensus       128 ~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~  191 (591)
T 2vgl_B          128 KCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADSNPMVVANAVAALSEISESH  191 (591)
T ss_dssp             HHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence            344567899999999999877554444221   1579999999999999999888888888876654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=84.88  E-value=0.64  Score=42.47  Aligned_cols=88  Identities=13%  Similarity=0.093  Sum_probs=68.7

Q ss_pred             hhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh-ccHHHHHHHHhcCCCc----ccchhhhhhhhhhhhcChHHHHHH
Q psy4702          18 FLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDV----GVQHRALVIVGNILSAGKELAERV   92 (138)
Q Consensus        18 vll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~-~~wleil~~L~~~~~~----~lqHRG~viv~Nmi~a~~e~a~kl   92 (138)
                      +.+-++.-+..|-.|.+.|.-||. +..-++||+. ++.+|.|..+...+..    .++.+-++++.|++..+...=.-|
T Consensus       172 v~lL~d~rE~iRneallLL~~Lt~-~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~F  250 (651)
T 3grl_A          172 MDLLADSREVIRNDGVLLLQALTR-SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFF  250 (651)
T ss_dssp             HGGGGCSSHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHhCchHHHHHHHHHHHHHHhc-CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHH
Confidence            334455568899999999999999 7889999999 9999999999998776    455556666999998775555567


Q ss_pred             hhhhHHHHHHHhhc
Q psy4702          93 LSTELMEILMALTL  106 (138)
Q Consensus        93 ~es~~leiL~~~~k  106 (138)
                      .|++.+.-|..+.+
T Consensus       251 rEt~~i~~L~~LL~  264 (651)
T 3grl_A          251 KEGSYIQRMKPWFE  264 (651)
T ss_dssp             HHTTCGGGGGGGGC
T ss_pred             HHcCCHHHHHHHhC
Confidence            77777766665554

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=83.89  E-value=5.5  Score=34.25  Aligned_cols=106  Identities=17%  Similarity=0.088  Sum_probs=65.2

Q ss_pred             hhcCCC-CHHHHHhhhhhhhhhccCCHHHHh-hhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhh
Q psy4702          19 LLTCEE-DTETACAAAGALAMLTSVSTPVCS-MLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTE   96 (138)
Q Consensus        19 ll~~eE-D~~tr~AA~GALAmLT~~~~~~c~-~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~   96 (138)
                      .+.+.+ +...|.+|..+|.-+.+..+.-.. ....+..++.+..++.+++++++.-.+-++.+++....+.-...+...
T Consensus       180 ~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  259 (876)
T 1qgr_A          180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA  259 (876)
T ss_dssp             HHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTT
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            344443 688999998888876542221111 000022466677777888888988888888888876544433444557


Q ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          97 LMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        97 ~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      +++.+....+.....++..|.+.+..+.
T Consensus       260 l~~~~~~~~~~~~~~v~~~al~~l~~l~  287 (876)
T 1qgr_A          260 LFAITIEAMKSDIDEVALQGIEFWSNVC  287 (876)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            7888777665443366666666655544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=83.65  E-value=0.92  Score=43.10  Aligned_cols=98  Identities=17%  Similarity=0.147  Sum_probs=59.1

Q ss_pred             Chhh-hhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHH
Q psy4702          12 SQVR-FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAE   90 (138)
Q Consensus        12 ~Rlk-lLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~   90 (138)
                      ..++ +|-.+....+...|++|.-||+++.--++..|.++++        .|..+.|+.+|+.....+..+-.+.+.   
T Consensus       577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~--------~L~~~~d~~VR~gAalALGli~aGn~~---  645 (963)
T 4ady_A          577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ--------LLSKSHNAHVRCGTAFALGIACAGKGL---  645 (963)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTT--------TGGGCSCHHHHHHHHHHHHHHTSSSCC---
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHH--------HHHhcCCHHHHHHHHHHHHHhccCCCc---
Confidence            3344 4444444456678999999999865434555555544        344577777765555544444333221   


Q ss_pred             HHhhhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          91 RVLSTELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        91 kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                          ..++++|..+++.++..|.+.|..+|-...
T Consensus       646 ----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          646 ----QSAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             ----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             ----HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence                234667777777665688888888876543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=81.52  E-value=5.7  Score=34.06  Aligned_cols=96  Identities=10%  Similarity=0.171  Sum_probs=64.0

Q ss_pred             CHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcCh-HHHHHHhhhhHHHHHHH
Q psy4702          25 DTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGK-ELAERVLSTELMEILMA  103 (138)
Q Consensus        25 D~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~-e~a~kl~es~~leiL~~  103 (138)
                      +...|.+|.-+|..|+...+   ..++ +..++.+..++.+++...|+-++.++.++..... +.-...++ .++..|..
T Consensus       344 ~~~~r~~a~~~L~~l~~~~~---~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~  418 (861)
T 2bpt_A          344 DWNVSMSAGACLQLFAQNCG---NHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILN  418 (861)
T ss_dssp             CCHHHHHHHHHHHHHHHHHG---GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHcc---HhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHH
Confidence            34688888888887765211   1111 5577888888889999999999999999987532 32233333 46666666


Q ss_pred             hhccccHHHHHHHHHHHHHHHh
Q psy4702         104 LTLLEGEEVRKLALQALAKGEE  125 (138)
Q Consensus       104 ~~k~~~~~v~~~a~eaLk~~~~  125 (138)
                      ..+.+...|+..+..+|..+.+
T Consensus       419 ~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T 2bpt_A          419 LMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCcHHHHHHHHHHHHHHHH
Confidence            6554433777777777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	138
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-05
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-04
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	0.001

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-05
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 2/104 (1%)

Query: 19  LLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIV 78
            +      E      GAL +L         ++   N + +F Q+L  P   +Q  A  ++
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARDVHN-RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484

Query: 79  GNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAK 122
              L+  KE AE + +      L  L     E V   A   L +
Sbjct: 485 CE-LAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 1e-04
 Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 1/100 (1%)

Query: 23  EEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNIL 82
            +D +     A  +             + +   +     +L  P+  VQ  A   + N++
Sbjct: 13  SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV 72

Query: 83  SAGKELAERVLSTELMEILMALTL-LEGEEVRKLALQALA 121
                          +   ++L       E++K     L 
Sbjct: 73  FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLW 112

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 19/90 (21%), Positives = 41/90 (45%)

Query: 15  RFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRA 74
           +F+  L   + +     +A AL  + S ++     +++   +  F  +LA P   +  +A
Sbjct: 60  KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 119

Query: 75  LVIVGNILSAGKELAERVLSTELMEILMAL 104
           +  +GNI   G    + V+    ++ L+AL
Sbjct: 120 VWALGNIAGDGSAFRDLVIKHGAIDPLLAL 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.65
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.52
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.45
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.17
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.17
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.17
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.99
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.83
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	97.75
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.45
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	94.47
d1b3ua_	588	Constant regulatory domain of protein phosphatase	94.06
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	93.91
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	92.39
d1b3ua_	588	Constant regulatory domain of protein phosphatase	92.27
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	90.83
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	80.71
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	80.71

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=5.3e-08  Score=72.47  Aligned_cols=111  Identities=12%  Similarity=0.017  Sum_probs=97.0

Q ss_pred             hhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhh
Q psy4702          16 FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLST   95 (138)
Q Consensus        16 lLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es   95 (138)
                      .|+-|-+.+|+.++..|+++|.-|+.-++...+.|.+..+++.|..|+.++++++|..++-+++|+...+.+....+.+.
T Consensus         6 ~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~   85 (457)
T d1xm9a1           6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ   85 (457)
T ss_dssp             HHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence            34555567889999999999999986568889999888899999999999999999999999999998888888999999


Q ss_pred             hHHHHHHHhhccccH-HHHHHHHHHHHHHHhC
Q psy4702          96 ELMEILMALTLLEGE-EVRKLALQALAKGEEY  126 (138)
Q Consensus        96 ~~leiL~~~~k~~~~-~v~~~a~eaLk~~~~~  126 (138)
                      |+++.|..+.+...+ .+...|..+|..+...
T Consensus        86 g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~  117 (457)
T d1xm9a1          86 NGIREAVSLLRRTGNAEIQKQLTGLLWNLSST  117 (457)
T ss_dssp             TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             CChHHHHHHHhccCcHHHHHHHHHHHHHHHhh
Confidence            999999998877655 7888888888887653

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.6e-07  Score=70.68  Aligned_cols=110  Identities=16%  Similarity=0.135  Sum_probs=94.4

Q ss_pred             hhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhh
Q psy4702          16 FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLST   95 (138)
Q Consensus        16 lLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es   95 (138)
                      ++-+|..+.|+..+..|.+||..|+..++.....+....+++.|..++.++++.+|.+++-++.|+...+.+....+.+.
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  185 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            34456567888899999999999998667666666668899999999999999999999999999998888889999999


Q ss_pred             hHHHHHHHhhccccHHHHHHHHHHHHHHHh
Q psy4702          96 ELMEILMALTLLEGEEVRKLALQALAKGEE  125 (138)
Q Consensus        96 ~~leiL~~~~k~~~~~v~~~a~eaLk~~~~  125 (138)
                      |++..|..+.+.++.++++.|..||..+..
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            999999999876655888888888877654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.8e-07  Score=73.09  Aligned_cols=108  Identities=17%  Similarity=0.130  Sum_probs=94.6

Q ss_pred             hhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhh
Q psy4702          16 FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLST   95 (138)
Q Consensus        16 lLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es   95 (138)
                      ++-+|...+|..+++.|.++|+.|+. ++..+..|++..+++.|..++.++++++|...+-.+.|+...+....+.+.+.
T Consensus        64 l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~  142 (529)
T d1jdha_          64 IVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA  142 (529)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhc
Confidence            34467778899999999999999998 89999999998899999999999999999999999999988777777788899


Q ss_pred             hHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          96 ELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        96 ~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      |+++.|..+.+.+..++...+..||..+.
T Consensus       143 g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  171 (529)
T d1jdha_         143 GGLQKMVALLNKTNVKFLAITTDCLQILA  171 (529)
T ss_dssp             THHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHccChHHHHHHHHHHHHHh
Confidence            99999999987665577888888887664

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=8.3e-06  Score=61.00  Aligned_cols=108  Identities=10%  Similarity=0.014  Sum_probs=88.7

Q ss_pred             hhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhc-CCCcccchhhhhhhhhhhhcChHHHHHHhhh
Q psy4702          17 LFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILA-HPDVGVQHRALVIVGNILSAGKELAERVLST   95 (138)
Q Consensus        17 Lvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~-~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es   95 (138)
                      +..+...+|..+|..|+.+|+.++..++.+...+....+++.|..++. ++++++|.+++..+.|++..+......+.+.
T Consensus        64 l~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~  143 (264)
T d1xqra1          64 VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRL  143 (264)
T ss_dssp             HHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHh
Confidence            334666789999999999999999855666666666778999988885 5678899999999999999988888999999


Q ss_pred             hHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          96 ELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        96 ~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      |++.+|..+.+.+..++...+..+|..+.
T Consensus       144 ~gi~~L~~lL~~~~~~~~~~a~~~L~~l~  172 (264)
T d1xqra1         144 DGFSVLMRAMQQQVQKLKVKSAFLLQNLL  172 (264)
T ss_dssp             THHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            99999999988765566666777776554

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=5.1e-06  Score=63.60  Aligned_cols=111  Identities=16%  Similarity=0.143  Sum_probs=92.1

Q ss_pred             hhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhh-cChHHHHHHhh
Q psy4702          16 FLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS-AGKELAERVLS   94 (138)
Q Consensus        16 lLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~-a~~e~a~kl~e   94 (138)
                      .++-+-...|...+..|..+|..|+..++.....+.+...++.+..+..++++++|+.++-++.|+.. .+.+....+.+
T Consensus       276 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~  355 (434)
T d1q1sc_         276 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH  355 (434)
T ss_dssp             GHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             hHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            34445567788899999999999987556666666667789999999999999999999999999986 46677788999


Q ss_pred             hhHHHHHHHhhccccHHHHHHHHHHHHHHHhC
Q psy4702          95 TELMEILMALTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus        95 s~~leiL~~~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      .|+++.|..+.+.++.+++..+.++|..++++
T Consensus       356 ~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~  387 (434)
T d1q1sc_         356 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  387 (434)
T ss_dssp             TTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            99999999998766558888899998877653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=4e-06  Score=64.19  Aligned_cols=111  Identities=16%  Similarity=0.211  Sum_probs=94.0

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      ++.++-+...+|.+++.+|..+|.-++..++..+..+++...++.|..++.++++++|+..+.++.|+..++.+....+.
T Consensus       232 ~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~  311 (434)
T d1q1sc_         232 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV  311 (434)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHh
Confidence            45566677888999999999999999876778888888877889999999999999999999999999998988889999


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      +.++++.|..+......+++..|..+|..+.
T Consensus       312 ~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~  342 (434)
T d1q1sc_         312 NHGLVPFLVGVLSKADFKTQKEAAWAITNYT  342 (434)
T ss_dssp             HTTCHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            9999999999987654466666666665443

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=2.2e-05  Score=62.32  Aligned_cols=108  Identities=19%  Similarity=0.212  Sum_probs=91.3

Q ss_pred             hhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHH
Q psy4702          19 LLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELM   98 (138)
Q Consensus        19 ll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~l   98 (138)
                      +|....|...+..|+++|+-+++.++.....+.+...+.+|..++.++++++++.++.++.|+...+.+....+.+.|++
T Consensus       127 ~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~  206 (503)
T d1wa5b_         127 FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAM  206 (503)
T ss_dssp             TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhccc
Confidence            55556788899999999999998566666666557789999999999999999999999999998888999999999999


Q ss_pred             HHHHHhhccccHHHHHHHHHHHHHHHhC
Q psy4702          99 EILMALTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus        99 eiL~~~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      +.|..+.......+...+..+|..+...
T Consensus       207 ~~L~~ll~~~~~~~~~~~~~~l~nl~~~  234 (503)
T d1wa5b_         207 EPILGLFNSNKPSLIRTATWTLSNLCRG  234 (503)
T ss_dssp             HHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred             ccchhhcccCCHHHHHHHHHHHHHHhcC
Confidence            9999988765557777788888877643

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2.1e-05  Score=58.03  Aligned_cols=112  Identities=12%  Similarity=0.125  Sum_probs=89.2

Q ss_pred             hhhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcC------CCcccchhhhhhhhhhhhcCh
Q psy4702          13 QVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAH------PDVGVQHRALVIVGNILSAGK   86 (138)
Q Consensus        13 RlklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~------~~~~lqHRG~viv~Nmi~a~~   86 (138)
                      -+..++-+...+|.+++.+|.++|.-|+. ++.....|.+ .+++-+..++.+      ++++++.-.+-.++|+...+.
T Consensus       332 ~l~~L~~~l~~~~~~v~~~a~~~l~~La~-~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~  409 (457)
T d1xm9a1         332 GLPQIARLLQSGNSDVVRSGASLLSNMSR-HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP  409 (457)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT
T ss_pred             ChHHHHhhhcCccHHHHHHHHHHHHHHhh-ChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCH
Confidence            35566667778899999999999999998 6766555543 456666666643      345688888899999999899


Q ss_pred             HHHHHHhhhhHHHHHHHhhccccH-HHHHHHHHHHHHHHhC
Q psy4702          87 ELAERVLSTELMEILMALTLLEGE-EVRKLALQALAKGEEY  126 (138)
Q Consensus        87 e~a~kl~es~~leiL~~~~k~~~~-~v~~~a~eaLk~~~~~  126 (138)
                      +..+.+++.|+++.|..+.+..++ .+.+.|..+|.-+..+
T Consensus       410 ~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         410 QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            999999999999999999888765 8899999999877543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.83  E-value=7.2e-05  Score=59.21  Aligned_cols=110  Identities=23%  Similarity=0.226  Sum_probs=93.6

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHh
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVL   93 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~   93 (138)
                      +..++-+...+|...+..|..+|..|+..++.....+++...++.+..++.++++.++..++-++.|+...+.+....++
T Consensus       248 l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~  327 (503)
T d1wa5b_         248 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI  327 (503)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            34566777788999999999999999986677777777777999999999999999999999999999998889999999


Q ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHHHH
Q psy4702          94 STELMEILMALTLLEGEEVRKLALQALAKG  123 (138)
Q Consensus        94 es~~leiL~~~~k~~~~~v~~~a~eaLk~~  123 (138)
                      +.|+++.|..+.+.++..+++.+..+|.-+
T Consensus       328 ~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl  357 (503)
T d1wa5b_         328 NAGVLPALRLLLSSPKENIKKEACWTISNI  357 (503)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            999999999998776556666666666544

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=4.5e-05  Score=60.67  Aligned_cols=109  Identities=10%  Similarity=-0.036  Sum_probs=90.8

Q ss_pred             hhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh-ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHH
Q psy4702          14 VRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLE-KNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERV   92 (138)
Q Consensus        14 lklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~-~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl   92 (138)
                      +..|+-+....|++++..|.++|+.|.. +..-+++.+. ...++.|..++.++++++|.....+++|+...+.+....+
T Consensus       103 i~~Li~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  181 (529)
T d1jdha_         103 IPALVKMLGSPVDSVLFYAITTLHNLLL-HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII  181 (529)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHH-HCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhc-ccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            4556666678999999999999998876 4455666555 8899999999999999999999999999998888888889


Q ss_pred             hhhhHHHHHHHhhccccH-HHHHHHHHHHHHH
Q psy4702          93 LSTELMEILMALTLLEGE-EVRKLALQALAKG  123 (138)
Q Consensus        93 ~es~~leiL~~~~k~~~~-~v~~~a~eaLk~~  123 (138)
                      .+.|+++.|..+.+.+.. .+++.+..+|..+
T Consensus       182 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~l  213 (529)
T d1jdha_         182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVL  213 (529)
T ss_dssp             HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             HhcccchHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence            999999999999877654 7777777777654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.45  E-value=0.0036  Score=40.60  Aligned_cols=90  Identities=18%  Similarity=0.050  Sum_probs=65.5

Q ss_pred             CCChhhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHH
Q psy4702          10 YCSQVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELA   89 (138)
Q Consensus        10 ~n~RlklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a   89 (138)
                      +.+-+..|+-+...+|...|.+|..+|+-+..           +..++.|..++.|+++.+|...+-.+..+        
T Consensus        20 ~~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i--------   80 (111)
T d1te4a_          20 GDEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQI--------   80 (111)
T ss_dssp             SSTTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH--------
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccchhHHHHHHHHHHHHh--------
Confidence            45566667777778899999999998876543           34567778888999999987777666543        


Q ss_pred             HHHhhhhHHHHHHHhhccccHHHHHHHHHHHH
Q psy4702          90 ERVLSTELMEILMALTLLEGEEVRKLALQALA  121 (138)
Q Consensus        90 ~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk  121 (138)
                         -..+..+.|..+.+.+...|++.|.++|+
T Consensus        81 ---~~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          81 ---GGERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             ---CSHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             ---CccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence               23456777877776554488888888875

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.056  Score=37.82  Aligned_cols=56  Identities=16%  Similarity=0.163  Sum_probs=43.4

Q ss_pred             hhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhh
Q psy4702          17 LFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILS   83 (138)
Q Consensus        17 Lvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~   83 (138)
                      |+=+.+.+|+.+|.+|..+|..+.+  +         .-+++|..++.|+++++|+.++-.+.++-.
T Consensus        24 L~~~L~d~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~   79 (276)
T d1oyza_          24 LFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKI   79 (276)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence            3344557899999999999987654  3         346778888999999999988888877643

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.11  Score=40.68  Aligned_cols=67  Identities=19%  Similarity=0.163  Sum_probs=45.5

Q ss_pred             HHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          55 WVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        55 wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      -++.++.++.|+.+.+|.-.+-++.++...-+   .+.....+..+|..+...++.+|+..|.+||+.+.
T Consensus       520 ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~---~~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         520 MLPTVLRMAGDPVANVRFNVAKSLQKIGPILD---NSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC---HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC---cHhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            35566777788888888777777777653211   23344556677777755555599999999998763

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.91  E-value=0.027  Score=36.15  Aligned_cols=79  Identities=20%  Similarity=0.179  Sum_probs=56.4

Q ss_pred             CCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHH
Q psy4702          23 EEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILM  102 (138)
Q Consensus        23 eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~  102 (138)
                      ++|+..|++|.-+|+.+-.            ..++.|..++.|+++.+|...+.++.++-           ..+.++.|.
T Consensus         3 D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~-----------~~~~~~~L~   59 (111)
T d1te4a_           3 DENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLI   59 (111)
T ss_dssp             SSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcc-----------hhhhHHHHH
Confidence            4677889999988886532            23455677889999999988888877653           223466777


Q ss_pred             HhhccccHHHHHHHHHHHHHHH
Q psy4702         103 ALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus       103 ~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      .+.+.++..|+..|.++|...-
T Consensus        60 ~~l~d~~~~VR~~a~~aL~~i~   81 (111)
T d1te4a_          60 KLLEDDSGFVRSGAARSLEQIG   81 (111)
T ss_dssp             HHHHHCCTHHHHHHHHHHHHHC
T ss_pred             hhhccchhHHHHHHHHHHHHhC
Confidence            7766544488888888887653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=92.39  E-value=0.37  Score=33.34  Aligned_cols=99  Identities=11%  Similarity=0.067  Sum_probs=59.2

Q ss_pred             hhhhhhhhcCCCCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHH
Q psy4702          13 QVRFLFLLTCEEDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERV   92 (138)
Q Consensus        13 RlklLvll~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl   92 (138)
                      =+.+++-++.++|+..|.+|.-+|..+.. ....-..+    ....+..+..++++.+++-.+-.+.++.........+ 
T Consensus        51 ~~~~l~~~l~d~~~~vr~~a~~aL~~l~~-~~~~~~~~----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-  124 (276)
T d1oyza_          51 AVRLAIEFCSDKNYIRRDIGAFILGQIKI-CKKCEDNV----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-  124 (276)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHSCC-CTTTHHHH----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhcc-ccccccch----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-
Confidence            36788888899999999999999988765 22222222    2233445567888888887777777776544332222 


Q ss_pred             hhhhHHHHHHHhhccccHHHHHHHHHHHH
Q psy4702          93 LSTELMEILMALTLLEGEEVRKLALQALA  121 (138)
Q Consensus        93 ~es~~leiL~~~~k~~~~~v~~~a~eaLk  121 (138)
                          +++.|......+...|...|..++.
T Consensus       125 ----~~~~l~~~~~d~~~~vr~~a~~~l~  149 (276)
T d1oyza_         125 ----IVEQSQITAFDKSTNVRRATAFAIS  149 (276)
T ss_dssp             ----HHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHhcCcchHHHHHHHHHHh
Confidence                2344444433322244444444443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.31  Score=38.02  Aligned_cols=68  Identities=18%  Similarity=0.198  Sum_probs=45.3

Q ss_pred             cHHHHHHHHhcCCCcccchhhhhhhhhhhhcChHHHHHHhhhhHHHHHHHhhccccHHHHHHHHHHHHHHH
Q psy4702          54 NWVDIFKQILAHPDVGVQHRALVIVGNILSAGKELAERVLSTELMEILMALTLLEGEEVRKLALQALAKGE  124 (138)
Q Consensus        54 ~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~~e~a~kl~es~~leiL~~~~k~~~~~v~~~a~eaLk~~~  124 (138)
                      .+++.+..||.|+++.+|......+.++...-   ......+.++.+|..+.+.+...|+..|.++|....
T Consensus       164 ~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~---~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~  231 (588)
T d1b3ua_         164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL---ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA  231 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS---CHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh---cHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhh
Confidence            45778888999999999998888888876531   123334556666666655443366666666665543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.83  E-value=0.11  Score=38.02  Aligned_cols=98  Identities=20%  Similarity=0.216  Sum_probs=65.7

Q ss_pred             CCHHHHHhhhhhhhhhccCCHHHHhhhhhccHHHHHHHHhcCCCcccchhhhhhhhhhhhc-ChHHHHHHhhhhHHHHHH
Q psy4702          24 EDTETACAAAGALAMLTSVSTPVCSMLLEKNWVDIFKQILAHPDVGVQHRALVIVGNILSA-GKELAERVLSTELMEILM  102 (138)
Q Consensus        24 ED~~tr~AA~GALAmLT~~~~~~c~~I~~~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a-~~e~a~kl~es~~leiL~  102 (138)
                      +|...|.+|+-++..++...++   .++ +.-++++...+.+++...||=++.++.+++.. .++.-+. .-..++..|.
T Consensus       339 ~~~~~~~~a~~~l~~l~~~~~~---~~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~  413 (458)
T d1ibrb_         339 DDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLI  413 (458)
T ss_dssp             TCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhccH---hhh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHH
Confidence            4445788888777777653221   111 34667788888899988888888888888753 2222111 1245677777


Q ss_pred             HhhccccHHHHHHHHHHHHHHHhC
Q psy4702         103 ALTLLEGEEVRKLALQALAKGEEY  126 (138)
Q Consensus       103 ~~~k~~~~~v~~~a~eaLk~~~~~  126 (138)
                      ...+.+...|+..|..||....++
T Consensus       414 ~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         414 ELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHH
Confidence            776655448999999999888765

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.71  E-value=1.8  Score=35.72  Aligned_cols=101  Identities=15%  Similarity=0.068  Sum_probs=64.0

Q ss_pred             cCCCCHHHHHhhhhhhhhhccCCHHHHhhhhh--ccHHHHHHHHhcCCCcccchhhhhhhhhhhhcC-hHHHHHHhhhhH
Q psy4702          21 TCEEDTETACAAAGALAMLTSVSTPVCSMLLE--KNWVDIFKQILAHPDVGVQHRALVIVGNILSAG-KELAERVLSTEL   97 (138)
Q Consensus        21 ~~eED~~tr~AA~GALAmLT~~~~~~c~~I~~--~~wleil~~L~~~~~~~lqHRG~viv~Nmi~a~-~e~a~kl~es~~   97 (138)
                      -..+|...|.||.-||+.+++.   +-+.+..  ++-++.|..++.|+++.+|.+.+.++..+...- .+.-+.... .+
T Consensus       404 l~s~~~~~reaa~~alg~i~eg---~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~-~~  479 (888)
T d1qbkb_         404 LFHHEWVVKESGILVLGAIAEG---CMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK-PL  479 (888)
T ss_dssp             TTSSSHHHHHHHHHHHHHHTTT---SHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTT-TH
T ss_pred             hccchhHHHHHHHHHhhhhhhh---HHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhh-hh
Confidence            3457788999998888877652   2233333  667788888899999999999988887765311 111122222 23


Q ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHHh
Q psy4702          98 MEILMALTLLEGEEVRKLALQALAKGEE  125 (138)
Q Consensus        98 leiL~~~~k~~~~~v~~~a~eaLk~~~~  125 (138)
                      +..|......+...|.+.|..||..+.+
T Consensus       480 l~~ll~~l~d~~~~V~~~a~~al~~l~~  507 (888)
T d1qbkb_         480 MTELLKRILDSNKRVQEAACSAFATLEE  507 (888)
T ss_dssp             HHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4444333233323778888888887765