Psyllid ID: psy4727

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MYGLIPSSSPIDMSNNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGTTKSNA
Secondary Structure (PSIPRED)
cccccccccEEEEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcEEEEEEEccEEEEEEEEEEccccEEEEEEEEEEEEEEEEEccccEEEEEEEEccccccccccEEEEEccEEEEEEcccccccccccHHHHccccEEEEEEEEEEEcccccEEEEEEEEccccEEcccEEEccEEEEccccEEEEEccccccEEEEccccccHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccEHccccHHHHHHHHcccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcHEEEEcccEEEEEEcccEEEEEEEccccccHEEEEEEEEEEEEccccccccEEEcccEEEEEcccccccEEEEEEcEEEEEEEccccccHcccHHHHHHcccEEEEEEEEEEEcccccccccccccHHHEEcccccEEEEEEEccccEEEEEcccccccEEcccccccHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
myglipssspidmsnnsilnsygakqvteecPEAIFILCLQSIVGVMIQAFMVGIVFAklsrpkkrtqTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELkvggdgiedkiffiwpttivhkinpmsplytlSAADMLRERFEIVVILEGViestgmttqarssylpneilwgHRFETLVSFKKEtgehevnyglfnntyevhtplcsAQALDQLLAIHGTTKSNA
Flexible Loop (DISEMBL)
myglipssspidmsnNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLsrpkkrtqtllfsrnavicqrdgELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGviestgmttqARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGTTKSNA
Low Complexity Region (SEG)
MYGLIPSSSPIDMSNNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGTTKSNA
Disordered region (IsUnstruct)
******************LNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIH*******
Disordered Region (DISOPRED)
MYGLIPSSSPIDMSNNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSA*****************
Disordered Region (DISEMBL)
MYGLIPSSSPIDMSNNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGTTKSNA
Disordered Region (DISPRO)
**GLIPSSSPIDMSNNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIH*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYGLIPSSSPIDMSNNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGTTKSNA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
P52187	427	ATP-sensitive inward rect	yes	N/A	0.853	0.505	0.570	5e-69
Q14500	433	ATP-sensitive inward rect	yes	N/A	0.853	0.498	0.570	5e-69
Q4TZY1	427	ATP-sensitive inward rect	yes	N/A	0.853	0.505	0.570	6e-69
P52188	427	ATP-sensitive inward rect	yes	N/A	0.853	0.505	0.570	8e-69
P49656	427	Inward rectifier potassiu	no	N/A	0.853	0.505	0.566	1e-68
O70596	434	ATP-sensitive inward rect	no	N/A	0.861	0.502	0.556	1e-68
Q8JZN3	434	ATP-sensitive inward rect	no	N/A	0.861	0.502	0.556	1e-68
Q9UNX9	436	ATP-sensitive inward rect	no	N/A	0.861	0.5	0.556	1e-68
Q9MYY9	427	Inward rectifier potassiu	no	N/A	0.853	0.505	0.561	3e-68
O19182	427	Inward rectifier potassiu	no	N/A	0.853	0.505	0.561	4e-68

>sp|P52187|IRK12_MOUSE ATP-sensitive inward rectifier potassium channel 12 OS=Mus musculus GN=Kcnj12 PE=2 SV=2

 Score =  261 bits (666), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 125/219 (57%), Positives = 169/219 (77%), Gaps = 3/219 (1%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + VTEECP A+F++  QSIVG +I +FM+G + AK++RPKKR QTLLFS NAV+  R
Sbjct: 146 YGLRCVTEECPVAVFMVVAQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVALR 205

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLM+RVG++R+SHI+EAHVRAQLI+ +VT EGE +P  Q ++ VG D   D+IF +
Sbjct: 206 DGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRVTEEGEYIPLDQIDIDVGFDKGLDRIFLV 265

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TI+H+I+  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL NEILWGH
Sbjct: 266 SPITILHEIDEASPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLANEILWGH 325

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
           RFE ++   +E  +++++Y  F+ TYEV  TP CSA+ L
Sbjct: 326 RFEPVLF--EEKNQYKIDYSHFHKTYEVPSTPRCSAKDL 362

Probably participates in establishing action potential waveform and excitability of neuronal and muscle tissues. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. Can be blocked by extracellular barium and cesium.
Mus musculus (taxid: 10090)

>sp|Q14500|IRK12_HUMAN ATP-sensitive inward rectifier potassium channel 12 OS=Homo sapiens GN=KCNJ12 PE=2 SV=2

 Score =  260 bits (665), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 125/219 (57%), Positives = 169/219 (77%), Gaps = 3/219 (1%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + VTEECP A+F++  QSIVG +I +FM+G + AK++RPKKR QTLLFS NAV+  R
Sbjct: 146 YGLRCVTEECPVAVFMVVAQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVALR 205

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLM+RVG++R+SHI+EAHVRAQLI+ +VT EGE +P  Q ++ VG D   D+IF +
Sbjct: 206 DGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRVTEEGEYIPLDQIDIDVGFDKGLDRIFLV 265

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TI+H+I+  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL NEILWGH
Sbjct: 266 SPITILHEIDEASPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLANEILWGH 325

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
           RFE ++   +E  +++++Y  F+ TYEV  TP CSA+ L
Sbjct: 326 RFEPVLF--EEKNQYKIDYSHFHKTYEVPSTPRCSAKDL 362

Probably participates in establishing action potential waveform and excitability of neuronal and muscle tissues. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. Can be blocked by extracellular barium and cesium.

Homo sapiens (taxid: 9606)

>sp|Q4TZY1|IRK12_BOVIN ATP-sensitive inward rectifier potassium channel 12 OS=Bos taurus GN=KCNJ12 PE=2 SV=1

 Score =  260 bits (665), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 125/219 (57%), Positives = 169/219 (77%), Gaps = 3/219 (1%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + VTEECP A+F++  QSIVG +I +FM+G + AK++RPKKR QTLLFS NAV+  R
Sbjct: 146 YGLRCVTEECPVAVFMVVAQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVALR 205

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLM+RVG++R+SHI+EAHVRAQLI+ +VT EGE +P  Q ++ VG D   D+IF +
Sbjct: 206 DGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRVTEEGEYIPLDQIDIDVGFDKGLDRIFLV 265

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TI+H+I+  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL NEILWGH
Sbjct: 266 SPITILHEIDEASPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLANEILWGH 325

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
           RFE ++   +E  +++++Y  F+ TYEV  TP CSA+ L
Sbjct: 326 RFEPVLF--EEKNQYKIDYSHFHKTYEVPSTPRCSAKDL 362

Probably participates in establishing action potential waveform and excitability of neuronal and muscle tissues. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. Can be blocked by extracellular barium and cesium.

Bos taurus (taxid: 9913)

>sp|P52188|IRK12_RAT ATP-sensitive inward rectifier potassium channel 12 OS=Rattus norvegicus GN=Kcnj12 PE=1 SV=1

 Score =  260 bits (664), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 125/219 (57%), Positives = 168/219 (76%), Gaps = 3/219 (1%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + VTEECP A+F++  QSIVG +I +FM+G + AK+ RPKKR QTLLFS NAV+  R
Sbjct: 146 YGLRCVTEECPVAVFMVVAQSIVGCIIDSFMIGAIMAKMGRPKKRAQTLLFSHNAVVALR 205

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLM+RVG++R+SHI+EAHVRAQLI+ +VT EGE +P  Q ++ VG D   D+IF +
Sbjct: 206 DGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRVTEEGEYIPLDQIDIDVGFDKGLDRIFLV 265

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TI+H+I+  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL NEILWGH
Sbjct: 266 SPITILHEIDEASPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLANEILWGH 325

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
           RFE ++   +E  +++++Y  F+ TYEV  TP CSA+ L
Sbjct: 326 RFEPVLF--EEKNQYKIDYSHFHKTYEVPSTPRCSAKDL 362

Probably participates in establishing action potential waveform and excitability of neuronal and muscle tissues. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. Can be blocked by extracellular barium and cesium.

Rattus norvegicus (taxid: 10116)

>sp|P49656|IRK2_RABIT Inward rectifier potassium channel 2 OS=Oryctolagus cuniculus GN=KCNJ2 PE=2 SV=1

 Score =  259 bits (663), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 168/219 (76%), Gaps = 3/219 (1%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + VT+ECP A+F++  QSIVG +I AF++G V AK+++PKKR +TL+FS NAVI  R
Sbjct: 145 YGFRCVTDECPVAVFMVVFQSIVGCIIDAFIIGAVMAKMAKPKKRNETLVFSHNAVIAMR 204

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLM+RVG++R+SH++EAHVRAQL++ ++T EGE +P  Q ++ VG D   D+IF +
Sbjct: 205 DGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSGIDRIFLV 264

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TIVH+I+  SPLY LS  DM    FEIVVILEG++E+T MTTQ RSSYL NEILWGH
Sbjct: 265 SPITIVHEIDEDSPLYDLSKQDMDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGH 324

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
           R+E ++   +E   ++V+Y  F+ TYEV +TPLCSA+ L
Sbjct: 325 RYEPVLF--EEKHYYKVDYSRFHKTYEVPNTPLCSARDL 361

Probably participates in establishing action potential waveform and excitability of neuronal and muscle tissues. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. Can be blocked by extracellular barium and cesium.

Oryctolagus cuniculus (taxid: 9986)

>sp|O70596|IRK14_RAT ATP-sensitive inward rectifier potassium channel 14 OS=Rattus norvegicus GN=Kcnj14 PE=1 SV=1

 Score =  259 bits (662), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/221 (55%), Positives = 169/221 (76%), Gaps = 3/221 (1%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + VTEECP A+  + LQ I G ++ AF+VG V AK+++PKKR +TL+FS NAV+  R
Sbjct: 148 YGVRSVTEECPAAVAAVVLQCIAGCVLDAFVVGAVMAKMAKPKKRNETLVFSENAVVALR 207

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           D  LCLM+RVG++RRSH++EAHVRAQL++ +VT EGE +P   Q++ VG DG  D+IF +
Sbjct: 208 DRRLCLMWRVGNLRRSHLVEAHVRAQLLQPRVTPEGEYIPLDHQDVDVGFDGGTDRIFLV 267

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TIVH+I+  SPLY L  A++ R  FE+VVILEG++E+T MTTQ RSSYLP E+LWGH
Sbjct: 268 SPITIVHEIDSASPLYELGRAELARADFELVVILEGMVEATAMTTQCRSSYLPGELLWGH 327

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQALDQ 241
           RFE ++ F++ + ++EV+Y  F+ TYEV  TP+CSA+ LD+
Sbjct: 328 RFEPVL-FQRGS-QYEVDYRHFHRTYEVPGTPVCSAKELDE 366

Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. KCNJ14 gives rise to low-conductance channels with a low affinity to the channel blockers Barium and Cesium.

Rattus norvegicus (taxid: 10116)

>sp|Q8JZN3|IRK14_MOUSE ATP-sensitive inward rectifier potassium channel 14 OS=Mus musculus GN=Kcnj14 PE=2 SV=1

 Score =  259 bits (662), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/221 (55%), Positives = 169/221 (76%), Gaps = 3/221 (1%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + VTEECP A+  + LQ I G ++ AF+VG V AK+++PKKR +TL+FS NAV+  R
Sbjct: 148 YGVRSVTEECPAAVAAVVLQCIAGCVLDAFVVGAVMAKMAKPKKRNETLVFSENAVVALR 207

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           D  LCLM+RVG++RRSH++EAHVRAQL++ +VT EGE +P   Q++ VG DG  D+IF +
Sbjct: 208 DHRLCLMWRVGNLRRSHLVEAHVRAQLLQPRVTPEGEYIPLDHQDVDVGFDGGTDRIFLV 267

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TIVH+I+  SPLY L  A++ R  FE+VVILEG++E+T MTTQ RSSYLP E+LWGH
Sbjct: 268 SPITIVHEIDSASPLYELGRAELARADFELVVILEGMVEATAMTTQCRSSYLPGELLWGH 327

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQALDQ 241
           RFE ++ F++ + ++EV+Y  F+ TYEV  TP+CSA+ LD+
Sbjct: 328 RFEPVL-FQRGS-QYEVDYRHFHRTYEVPGTPVCSAKELDE 366

Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. KCNJ14 gives rise to low-conductance channels with a low affinity to the channel blockers Barium and Cesium.

Mus musculus (taxid: 10090)

>sp|Q9UNX9|IRK14_HUMAN ATP-sensitive inward rectifier potassium channel 14 OS=Homo sapiens GN=KCNJ14 PE=1 SV=1

 Score =  259 bits (662), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/221 (55%), Positives = 169/221 (76%), Gaps = 3/221 (1%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + VTEECP A+  + LQ I G ++ AF+VG V AK+++PKKR +TL+FS NAV+  R
Sbjct: 150 YGVRSVTEECPAAVAAVVLQCIAGCVLDAFVVGAVMAKMAKPKKRNETLVFSENAVVALR 209

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           D  LCLM+RVG++RRSH++EAHVRAQL++ +VT EGE +P   Q++ VG DG  D+IF +
Sbjct: 210 DHRLCLMWRVGNLRRSHLVEAHVRAQLLQPRVTPEGEYIPLDHQDVDVGFDGGTDRIFLV 269

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TIVH+I+  SPLY L  A++ R  FE+VVILEG++E+T MTTQ RSSYLP E+LWGH
Sbjct: 270 SPITIVHEIDSASPLYELGRAELARADFELVVILEGMVEATAMTTQCRSSYLPGELLWGH 329

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQALDQ 241
           RFE ++ F++ + ++EV+Y  F+ TYEV  TP+CSA+ LD+
Sbjct: 330 RFEPVL-FQRGS-QYEVDYRHFHRTYEVPGTPVCSAKELDE 368

Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. KCNJ14 gives rise to low-conductance channels with a low affinity to the channel blockers Barium and Cesium.

Homo sapiens (taxid: 9606)

>sp|Q9MYY9|IRK2_CANFA Inward rectifier potassium channel 2 OS=Canis familiaris GN=KCNJ2 PE=2 SV=1

 Score =  258 bits (659), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 123/219 (56%), Positives = 168/219 (76%), Gaps = 3/219 (1%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + VT+ECP A+F++  QSIVG +I AF++G V AK+++PKKR +TL+FS NAVI  R
Sbjct: 145 YGFRCVTDECPVAVFMVVFQSIVGCIIDAFIIGAVMAKMAKPKKRNETLVFSHNAVIAMR 204

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLM+RVG++R+SH++EAHVRAQL++ ++T EGE +P  Q ++ VG D   D+IF +
Sbjct: 205 DGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSGIDRIFLV 264

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TIVH+I+  SPLY LS  D+    FEIVVILEG++E+T MTTQ RSSYL NEILWGH
Sbjct: 265 SPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGH 324

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
           R+E ++   +E   ++V+Y  F+ TYEV +TPLCSA+ L
Sbjct: 325 RYEPVLF--EEKHYYKVDYSRFHKTYEVPNTPLCSARDL 361

Probably participates in establishing action potential waveform and excitability of neuronal and muscle tissues. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. Blocked by external barium or cesium.

Canis familiaris (taxid: 9615)

>sp|O19182|IRK2_BOVIN Inward rectifier potassium channel 2 OS=Bos taurus GN=KCNJ2 PE=2 SV=1

 Score =  258 bits (658), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 123/219 (56%), Positives = 168/219 (76%), Gaps = 3/219 (1%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + VT+ECP A+F++  QSIVG +I AF++G V AK+++PKKR +TL+FS NAVI  R
Sbjct: 145 YGFRCVTDECPVAVFMVVFQSIVGCIIDAFIIGAVMAKMAKPKKRNETLVFSHNAVIAMR 204

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLM+RVG++R+SH++EAHVRAQL++ ++T EGE +P  Q ++ VG D   D+IF +
Sbjct: 205 DGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSGIDRIFLV 264

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TIVH+I+  SPLY LS  D+    FEIVVILEG++E+T MTTQ RSSYL NEILWGH
Sbjct: 265 SPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGH 324

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
           R+E ++   +E   ++V+Y  F+ TYEV +TPLCSA+ L
Sbjct: 325 RYEPVLF--EEKHYYKVDYSRFHKTYEVPNTPLCSARDL 361

Probably participates in establishing action potential waveform and excitability of neuronal and muscle tissues. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. Can be blocked by extracellular barium and cesium.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
328719111	489	PREDICTED: inward rectifier potassium ch	0.905	0.468	0.838	1e-112
328719109	503	PREDICTED: inward rectifier potassium ch	0.905	0.455	0.838	1e-112
328719113	431	PREDICTED: inward rectifier potassium ch	0.905	0.531	0.838	1e-112
156549109	643	PREDICTED: ATP-sensitive inward rectifie	0.889	0.349	0.822	1e-110
307183920	616	Inward rectifier potassium channel 2 [Ca	0.889	0.365	0.813	1e-110
307207102	434	ATP-sensitive inward rectifier potassium	0.909	0.529	0.808	1e-109
383865735	736	PREDICTED: inward rectifier potassium ch	0.889	0.305	0.808	1e-109
350398252	689	PREDICTED: hypothetical protein LOC10074	0.916	0.336	0.778	1e-108
350398248	703	PREDICTED: hypothetical protein LOC10074	0.873	0.314	0.814	1e-108
340724660	703	PREDICTED: hypothetical protein LOC10064	0.873	0.314	0.814	1e-108

>gi|328719111|ref|XP_003246667.1| PREDICTED: inward rectifier potassium channel 2-like isoform 3 [Acyrthosiphon pisum]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/229 (83%), Positives = 212/229 (92%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG+K  TEECPEAIFI+CLQSIVGVMIQAFMVG+VFAKLSRPKKRTQTLLFSRNAVICQR
Sbjct: 196 YGSKHTTEECPEAIFIMCLQSIVGVMIQAFMVGVVFAKLSRPKKRTQTLLFSRNAVICQR 255

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG LCLMFRVGDMR+SHIIEAHVRAQLI+KK+T+EGELLPF+QQELKVGGDG ED+IFFI
Sbjct: 256 DGILCLMFRVGDMRKSHIIEAHVRAQLIKKKMTIEGELLPFHQQELKVGGDGEEDRIFFI 315

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
           WPTTIVHKI P SPLY LSAAD L+++FEIVV+LEGVIESTGMTTQARSSYLPNEILWGH
Sbjct: 316 WPTTIVHKITPQSPLYMLSAADFLQQKFEIVVVLEGVIESTGMTTQARSSYLPNEILWGH 375

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGTTK 250
           RF+TLVSFKKETGEHEV+Y LFNNTY V TPLCSA  L +L+++   T+
Sbjct: 376 RFDTLVSFKKETGEHEVDYSLFNNTYVVDTPLCSAHDLKKLISLRAHTE 424

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719109|ref|XP_003246666.1| PREDICTED: inward rectifier potassium channel 2-like isoform 2 [Acyrthosiphon pisum]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/229 (83%), Positives = 212/229 (92%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG+K  TEECPEAIFI+CLQSIVGVMIQAFMVG+VFAKLSRPKKRTQTLLFSRNAVICQR
Sbjct: 210 YGSKHTTEECPEAIFIMCLQSIVGVMIQAFMVGVVFAKLSRPKKRTQTLLFSRNAVICQR 269

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG LCLMFRVGDMR+SHIIEAHVRAQLI+KK+T+EGELLPF+QQELKVGGDG ED+IFFI
Sbjct: 270 DGILCLMFRVGDMRKSHIIEAHVRAQLIKKKMTIEGELLPFHQQELKVGGDGEEDRIFFI 329

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
           WPTTIVHKI P SPLY LSAAD L+++FEIVV+LEGVIESTGMTTQARSSYLPNEILWGH
Sbjct: 330 WPTTIVHKITPQSPLYMLSAADFLQQKFEIVVVLEGVIESTGMTTQARSSYLPNEILWGH 389

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGTTK 250
           RF+TLVSFKKETGEHEV+Y LFNNTY V TPLCSA  L +L+++   T+
Sbjct: 390 RFDTLVSFKKETGEHEVDYSLFNNTYVVDTPLCSAHDLKKLISLRAHTE 438

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719113|ref|XP_001949404.2| PREDICTED: inward rectifier potassium channel 2-like isoform 1 [Acyrthosiphon pisum]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/229 (83%), Positives = 212/229 (92%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG+K  TEECPEAIFI+CLQSIVGVMIQAFMVG+VFAKLSRPKKRTQTLLFSRNAVICQR
Sbjct: 138 YGSKHTTEECPEAIFIMCLQSIVGVMIQAFMVGVVFAKLSRPKKRTQTLLFSRNAVICQR 197

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG LCLMFRVGDMR+SHIIEAHVRAQLI+KK+T+EGELLPF+QQELKVGGDG ED+IFFI
Sbjct: 198 DGILCLMFRVGDMRKSHIIEAHVRAQLIKKKMTIEGELLPFHQQELKVGGDGEEDRIFFI 257

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
           WPTTIVHKI P SPLY LSAAD L+++FEIVV+LEGVIESTGMTTQARSSYLPNEILWGH
Sbjct: 258 WPTTIVHKITPQSPLYMLSAADFLQQKFEIVVVLEGVIESTGMTTQARSSYLPNEILWGH 317

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGTTK 250
           RF+TLVSFKKETGEHEV+Y LFNNTY V TPLCSA  L +L+++   T+
Sbjct: 318 RFDTLVSFKKETGEHEVDYSLFNNTYVVDTPLCSAHDLKKLISLRAHTE 366

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549109|ref|XP_001607604.1| PREDICTED: ATP-sensitive inward rectifier potassium channel 12-like [Nasonia vitripennis]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/225 (82%), Positives = 208/225 (92%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG+K  TEECPEAIFI+C+QS+ GV++QAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR
Sbjct: 179 YGSKHTTEECPEAIFIMCIQSMTGVILQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 238

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+ CLMFRVGDMR+SHIIEAHVRAQ+I++KVT EGELLPF+Q ELKVGGDG EDKIFFI
Sbjct: 239 DGQPCLMFRVGDMRKSHIIEAHVRAQMIKRKVTREGELLPFFQTELKVGGDGEEDKIFFI 298

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
           WPTTIVHKIN  SPLY LSA+DMLRERFEI+V+LEGVIESTGMTTQARSSYLP+EILWGH
Sbjct: 299 WPTTIVHKINEQSPLYHLSASDMLRERFEIIVMLEGVIESTGMTTQARSSYLPSEILWGH 358

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIH 246
           RFE +++F+KETGE+EVNY LFNNTYEV TPLCSA  LD + A+H
Sbjct: 359 RFEHIITFRKETGEYEVNYTLFNNTYEVDTPLCSAAELDHVRAMH 403

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183920|gb|EFN70510.1| Inward rectifier potassium channel 2 [Camponotus floridanus]

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 183/225 (81%), Positives = 209/225 (92%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG+K  T+ECPEAIF LC+QS+ GV++QAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR
Sbjct: 170 YGSKHTTDECPEAIFTLCIQSMTGVILQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 229

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+ CLMFRVGDMR+SHIIEAHVRAQ+I++K+T EGELLPF+Q ELKVGGDG EDKIFFI
Sbjct: 230 DGQPCLMFRVGDMRKSHIIEAHVRAQMIKRKITKEGELLPFFQTELKVGGDGEEDKIFFI 289

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
           WPTTIVHKI+  SPLY +SA+DML+ERFEIVVILEGVIESTGMTTQARSSYLP+EILWGH
Sbjct: 290 WPTTIVHKIDRYSPLYRISASDMLQERFEIVVILEGVIESTGMTTQARSSYLPSEILWGH 349

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIH 246
           RF++++SF+KETGE+EVNY LFNNTYEV TPLCSA  LD++ AIH
Sbjct: 350 RFQSIISFRKETGEYEVNYSLFNNTYEVDTPLCSAADLDRIRAIH 394

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207102|gb|EFN84911.1| ATP-sensitive inward rectifier potassium channel 12 [Harpegnathos saltator]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/230 (80%), Positives = 211/230 (91%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YGAK  T+ECPEAIF LC+QS+ GV++QAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR
Sbjct: 117 YGAKHTTDECPEAIFTLCIQSMTGVILQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 176

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+ CLMFRVGDMR+SHIIEAHVRAQ+I++KVT EGELLPF+Q ELKVGGDG EDKIFFI
Sbjct: 177 DGQPCLMFRVGDMRKSHIIEAHVRAQMIKRKVTKEGELLPFFQTELKVGGDGEEDKIFFI 236

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
           WPTTIVHKI+  SPLY +SA+DMLRERFEIVVILEGVIESTGMTTQARSSYLP+EILWGH
Sbjct: 237 WPTTIVHKIDRNSPLYRISASDMLRERFEIVVILEGVIESTGMTTQARSSYLPSEILWGH 296

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGTTKS 251
           RFE +++F+KETGE+EVNY LFNNTYEV TPLCSA  LD++ A+H  +K+
Sbjct: 297 RFEPIITFRKETGEYEVNYTLFNNTYEVDTPLCSAADLDRIRAMHHRSKA 346

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865735|ref|XP_003708328.1| PREDICTED: inward rectifier potassium channel 2-like [Megachile rotundata]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 182/225 (80%), Positives = 208/225 (92%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG+K  T+ECPEA+F++C+QS+ GV++QAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR
Sbjct: 241 YGSKHPTDECPEAVFVICIQSMTGVILQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 300

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+ CLMFRVGDMR+SHIIEAHVRAQ+I++KVT EGELLPF+Q ELKVGGDG EDKIFFI
Sbjct: 301 DGQPCLMFRVGDMRKSHIIEAHVRAQMIKRKVTREGELLPFFQTELKVGGDGEEDKIFFI 360

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
           WPTTIVHKI+  SPLY +SA+DMLRERFEIVVILEGVIESTGMTTQARSSYLP+EILWGH
Sbjct: 361 WPTTIVHKIDEQSPLYHISASDMLRERFEIVVILEGVIESTGMTTQARSSYLPSEILWGH 420

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIH 246
           RFE +++FKKETGE+EVNY LFNNTYEV TPLCSA  LD++ A+ 
Sbjct: 421 RFEHIITFKKETGEYEVNYTLFNNTYEVDTPLCSAADLDKIRAMQ 465

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398252|ref|XP_003485136.1| PREDICTED: hypothetical protein LOC100749745 isoform 3 [Bombus impatiens]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/235 (77%), Positives = 211/235 (89%), Gaps = 3/235 (1%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG+K  T+ECPEA+F++C+QS+ GV++QAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR
Sbjct: 213 YGSKHPTDECPEAVFVICIQSMTGVILQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 272

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+ CLMFRVGDMR+SHIIEAHVRAQ+I++KVT EGELLPF+Q ELKVGGDG EDKIFFI
Sbjct: 273 DGQPCLMFRVGDMRKSHIIEAHVRAQMIKRKVTREGELLPFFQTELKVGGDGEEDKIFFI 332

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
           WPTTIVHKI+  SPLY +SA+DMLRERFEI+V+LEGVIESTGMTTQARSSYLP+EILWGH
Sbjct: 333 WPTTIVHKIDEKSPLYHISASDMLRERFEIIVMLEGVIESTGMTTQARSSYLPSEILWGH 392

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIH---GTTKSNA 253
           RFE +++FKKETGE+EVNY LFNNTYEV TPLCSA  LD+L  +    G   SN+
Sbjct: 393 RFEHIITFKKETGEYEVNYSLFNNTYEVDTPLCSAADLDKLRTMQRSKGERASNS 447

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398248|ref|XP_003485134.1| PREDICTED: hypothetical protein LOC100749745 isoform 1 [Bombus impatiens]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/221 (81%), Positives = 206/221 (93%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG+K  T+ECPEA+F++C+QS+ GV++QAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR
Sbjct: 213 YGSKHPTDECPEAVFVICIQSMTGVILQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 272

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+ CLMFRVGDMR+SHIIEAHVRAQ+I++KVT EGELLPF+Q ELKVGGDG EDKIFFI
Sbjct: 273 DGQPCLMFRVGDMRKSHIIEAHVRAQMIKRKVTREGELLPFFQTELKVGGDGEEDKIFFI 332

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
           WPTTIVHKI+  SPLY +SA+DMLRERFEI+V+LEGVIESTGMTTQARSSYLP+EILWGH
Sbjct: 333 WPTTIVHKIDEKSPLYHISASDMLRERFEIIVMLEGVIESTGMTTQARSSYLPSEILWGH 392

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 242
           RFE +++FKKETGE+EVNY LFNNTYEV TPLCSA  LD+L
Sbjct: 393 RFEHIITFKKETGEYEVNYSLFNNTYEVDTPLCSAADLDKL 433

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724660|ref|XP_003400699.1| PREDICTED: hypothetical protein LOC100647117 isoform 1 [Bombus terrestris]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/221 (81%), Positives = 206/221 (93%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG+K  T+ECPEA+F++C+QS+ GV++QAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR
Sbjct: 213 YGSKHPTDECPEAVFVICIQSMTGVILQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 272

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+ CLMFRVGDMR+SHIIEAHVRAQ+I++KVT EGELLPF+Q ELKVGGDG EDKIFFI
Sbjct: 273 DGQPCLMFRVGDMRKSHIIEAHVRAQMIKRKVTREGELLPFFQTELKVGGDGEEDKIFFI 332

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
           WPTTIVHKI+  SPLY +SA+DMLRERFEI+V+LEGVIESTGMTTQARSSYLP+EILWGH
Sbjct: 333 WPTTIVHKIDEKSPLYHISASDMLRERFEIIVMLEGVIESTGMTTQARSSYLPSEILWGH 392

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 242
           RFE +++FKKETGE+EVNY LFNNTYEV TPLCSA  LD+L
Sbjct: 393 RFEHIITFKKETGEYEVNYSLFNNTYEVDTPLCSAADLDKL 433

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
FB|FBgn0265042	555	Irk1 "Inwardly rectifying pota	0.873	0.398	0.791	3.4e-93
FB|FBgn0039081	453	Irk2 "Inwardly rectifying pota	0.885	0.494	0.607	4.3e-70
WB|WBGene00002150	463	irk-2 [Caenorhabditis elegans	0.873	0.477	0.565	2.4e-67
UNIPROTKB|F1NHE9	429	KCNJ12 "Uncharacterized protei	0.853	0.503	0.575	3.3e-63
UNIPROTKB|A2VDS5	427	KCNJ12 "Potassium inwardly-rec	0.853	0.505	0.575	3.3e-63
UNIPROTKB|Q4TZY1	427	KCNJ12 "ATP-sensitive inward r	0.853	0.505	0.575	3.3e-63
UNIPROTKB|F1PLH7	428	KCNJ12 "Uncharacterized protei	0.853	0.504	0.575	3.3e-63
UNIPROTKB|F6KIF6	440	KCNJ12 "Uncharacterized protei	0.853	0.490	0.575	3.3e-63
UNIPROTKB|Q14500	433	KCNJ12 "ATP-sensitive inward r	0.853	0.498	0.575	3.3e-63
MGI|MGI:108495	427	Kcnj12 "potassium inwardly-rec	0.853	0.505	0.575	3.3e-63

FB|FBgn0265042 Irk1 "Inwardly rectifying potassium channel" [Drosophila melanogaster (taxid:7227)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 175/221 (79%), Positives = 198/221 (89%)

Query:    22 YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
             YG + VTEECPEAIF +C+Q I GV IQAFMVGIVFAKLSRPKKR QTLLFSRNAVIC R
Sbjct:   157 YGNRYVTEECPEAIFTMCIQCITGVFIQAFMVGIVFAKLSRPKKRAQTLLFSRNAVICHR 216

Query:    82 DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
             DG  CLMFRVGDMR+SHIIEAHVRAQ+IRKKVT EGE+LPFYQQEL +G DG ED++ FI
Sbjct:   217 DGVPCLMFRVGDMRKSHIIEAHVRAQIIRKKVTKEGEVLPFYQQELHIGADGGEDRLMFI 276

Query:   142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
             WPTTIVHKI+  SPLY LSA+DML+ERFE+VV+LEGVIESTGMTTQARSSYLP+E+LWGH
Sbjct:   277 WPTTIVHKIDRNSPLYMLSASDMLKERFEVVVMLEGVIESTGMTTQARSSYLPSEVLWGH 336

Query:   202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 242
             RF  +VSF+KETGE+EV+Y LFNNTY+V TPLCSA+ LD+L
Sbjct:   337 RFVNVVSFRKETGEYEVDYTLFNNTYDVDTPLCSAKQLDEL 377

GO:0015272 "ATP-activated inward rectifier potassium channel activity" evidence=ISS

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA;NAS

GO:0042391 "regulation of membrane potential" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0006813 "potassium ion transport" evidence=IDA

GO:0035220 "wing disc development" evidence=IMP

GO:0045475 "locomotor rhythm" evidence=IMP

FB|FBgn0039081 Irk2 "Inwardly rectifying potassium channel 2" [Drosophila melanogaster (taxid:7227)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 136/224 (60%), Positives = 171/224 (76%)

Query:    22 YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
             YG +  + ECPEAIF++C QSI GVM  AFM GIVFAK++R K+R QTLLFS++AVICQR
Sbjct:   205 YGVRTTSPECPEAIFMMCFQSIYGVMSSAFMAGIVFAKMTRAKQRAQTLLFSKHAVICQR 264

Query:    82 DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
             DG L LMFRVGDMR+SHII A VRAQLIR K T EGE++  Y  EL++G D     +FFI
Sbjct:   265 DGTLSLMFRVGDMRKSHIIGAGVRAQLIRTKSTKEGEVMTQYFTELEIGTDDSGSDLFFI 324

Query:   142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
             WP  I HKI+  SPLY L+A DML+++FEIVVILEG +ESTG +TQARSSY+  EILWGH
Sbjct:   325 WPMVIEHKIDENSPLYNLNATDMLQDKFEIVVILEGTVESTGQSTQARSSYINTEILWGH 384

Query:   202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAI 245
             RF+ +V + K+   +E++Y  FN T +V TPLCSA+ L+++  I
Sbjct:   385 RFDPVVLYNKDLQAYEIDYARFNETTQVDTPLCSARELNEIYKI 428

GO:0015467 "G-protein activated inward rectifier potassium channel activity" evidence=ISS

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA;NAS

GO:0006813 "potassium ion transport" evidence=IDA

GO:0042391 "regulation of membrane potential" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0090099 "negative regulation of decapentaplegic signaling pathway" evidence=IGI

GO:0035220 "wing disc development" evidence=IMP

WB|WBGene00002150 irk-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 125/221 (56%), Positives = 167/221 (75%)

Query:    22 YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
             YG +  T+ CP  I  +C Q + GVM Q  M GI+F+KL+RP KR  TL+FS+NAVIC R
Sbjct:   134 YGFRYPTDACPLTIVTMCFQFMWGVMTQTLMAGIIFSKLARPIKRAATLIFSKNAVICLR 193

Query:    82 DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
             DG+LCL+FRVGDMR+S + EAHVR Q+I++ VT EGELLPF+Q ++ VG D   D++F I
Sbjct:   194 DGKLCLLFRVGDMRKSSLAEAHVRLQMIKRCVTYEGELLPFHQFDMDVGYDQGLDRVFVI 253

Query:   142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
             WP TI H+I+  SPL+ + A D+   +FEI+ ILEGV+ES G TTQAR+SYLP+EILWGH
Sbjct:   254 WPITICHEIDERSPLWEIGADDLKSAKFEIIAILEGVVESVGSTTQARTSYLPSEILWGH 313

Query:   202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 242
             RFE LV +KKE G++ +++G F+N Y V+TP CSA  +++L
Sbjct:   314 RFEKLVHYKKENGQYNIDFGKFHNVYSVNTPTCSAAEIERL 354

GO:0005242 "inward rectifier potassium channel activity" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NHE9 KCNJ12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 126/219 (57%), Positives = 171/219 (78%)

Query:    22 YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
             YG + VTEECP A+F++ +QSIVG +I +FM+G + AK++RPKKR QTLLFS NAV+  R
Sbjct:   146 YGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMR 205

Query:    82 DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
             DG+LCLM+RVG++R+SHI+EAHVRAQLI+ ++T EGE +P  Q ++ VG D   D+IF +
Sbjct:   206 DGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLV 265

Query:   142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
              P TI+H+IN  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL +EILWGH
Sbjct:   266 SPITILHEINEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGH 325

Query:   202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
             RFE ++ F+ E  +++V+Y  F+ TYEV  TP CSA+ L
Sbjct:   326 RFEPVL-FE-EKNQYKVDYSHFHKTYEVPSTPRCSAKDL 362

GO:0005242 "inward rectifier potassium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A2VDS5 KCNJ12 "Potassium inwardly-rectifying channel, subfamily J, member 12" [Bos taurus (taxid:9913)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 126/219 (57%), Positives = 170/219 (77%)

Query:    22 YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
             YG + VTEECP A+F++  QSIVG +I +FM+G + AK++RPKKR QTLLFS NAV+  R
Sbjct:   146 YGLRCVTEECPVAVFMVVAQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVALR 205

Query:    82 DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
             DG+LCLM+RVG++R+SHI+EAHVRAQLI+ +VT EGE +P  Q ++ VG D   D+IF +
Sbjct:   206 DGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRVTEEGEYIPLDQIDIDVGFDKGLDRIFLV 265

Query:   142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
              P TI+H+I+  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL NEILWGH
Sbjct:   266 SPITILHEIDEASPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLANEILWGH 325

Query:   202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
             RFE ++ F+ E  +++++Y  F+ TYEV  TP CSA+ L
Sbjct:   326 RFEPVL-FE-EKNQYKIDYSHFHKTYEVPSTPRCSAKDL 362

GO:0016021 "integral to membrane" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=IEA

UNIPROTKB|Q4TZY1 KCNJ12 "ATP-sensitive inward rectifier potassium channel 12" [Bos taurus (taxid:9913)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 126/219 (57%), Positives = 170/219 (77%)

Query:    22 YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
             YG + VTEECP A+F++  QSIVG +I +FM+G + AK++RPKKR QTLLFS NAV+  R
Sbjct:   146 YGLRCVTEECPVAVFMVVAQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVALR 205

Query:    82 DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
             DG+LCLM+RVG++R+SHI+EAHVRAQLI+ +VT EGE +P  Q ++ VG D   D+IF +
Sbjct:   206 DGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRVTEEGEYIPLDQIDIDVGFDKGLDRIFLV 265

Query:   142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
              P TI+H+I+  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL NEILWGH
Sbjct:   266 SPITILHEIDEASPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLANEILWGH 325

Query:   202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
             RFE ++ F+ E  +++++Y  F+ TYEV  TP CSA+ L
Sbjct:   326 RFEPVL-FE-EKNQYKIDYSHFHKTYEVPSTPRCSAKDL 362

GO:0016021 "integral to membrane" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=IEA

UNIPROTKB|F1PLH7 KCNJ12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 126/219 (57%), Positives = 170/219 (77%)

Query:    22 YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
             YG + VTEECP A+F++  QSIVG +I +FM+G + AK++RPKKR QTLLFS NAV+  R
Sbjct:   146 YGLRCVTEECPVAVFMVVAQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVALR 205

Query:    82 DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
             DG+LCLM+RVG++R+SHI+EAHVRAQLI+ +VT EGE +P  Q ++ VG D   D+IF +
Sbjct:   206 DGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRVTEEGEYIPLDQIDIDVGFDKGLDRIFLV 265

Query:   142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
              P TI+H+I+  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL NEILWGH
Sbjct:   266 SPITILHEIDEASPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLANEILWGH 325

Query:   202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
             RFE ++ F+ E  +++++Y  F+ TYEV  TP CSA+ L
Sbjct:   326 RFEPVL-FE-EKNQYKIDYSHFHKTYEVPSTPRCSAKDL 362

GO:0016021 "integral to membrane" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=IEA

UNIPROTKB|F6KIF6 KCNJ12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 126/219 (57%), Positives = 170/219 (77%)

Query:    22 YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
             YG + VTEECP A+F++  QSIVG +I +FM+G + AK++RPKKR QTLLFS NAV+  R
Sbjct:   146 YGLRCVTEECPVAVFMVVAQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVALR 205

Query:    82 DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
             DG+LCLM+RVG++R+SHI+EAHVRAQLI+ +VT EGE +P  Q ++ VG D   D+IF +
Sbjct:   206 DGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRVTEEGEYIPLDQIDIDVGFDKGLDRIFLV 265

Query:   142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
              P TI+H+I+  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL NEILWGH
Sbjct:   266 SPITILHEIDEASPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLANEILWGH 325

Query:   202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
             RFE ++ F+ E  +++++Y  F+ TYEV  TP CSA+ L
Sbjct:   326 RFEPVL-FE-EKNQYKIDYSHFHKTYEVPSTPRCSAKDL 362

GO:0016021 "integral to membrane" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=IEA

UNIPROTKB|Q14500 KCNJ12 "ATP-sensitive inward rectifier potassium channel 12" [Homo sapiens (taxid:9606)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 126/219 (57%), Positives = 170/219 (77%)

Query:    22 YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
             YG + VTEECP A+F++  QSIVG +I +FM+G + AK++RPKKR QTLLFS NAV+  R
Sbjct:   146 YGLRCVTEECPVAVFMVVAQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVALR 205

Query:    82 DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
             DG+LCLM+RVG++R+SHI+EAHVRAQLI+ +VT EGE +P  Q ++ VG D   D+IF +
Sbjct:   206 DGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRVTEEGEYIPLDQIDIDVGFDKGLDRIFLV 265

Query:   142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
              P TI+H+I+  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL NEILWGH
Sbjct:   266 SPITILHEIDEASPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLANEILWGH 325

Query:   202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
             RFE ++ F+ E  +++++Y  F+ TYEV  TP CSA+ L
Sbjct:   326 RFEPVL-FE-EKNQYKIDYSHFHKTYEVPSTPRCSAKDL 362

GO:0005242 "inward rectifier potassium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008200 "ion channel inhibitor activity" evidence=TAS

GO:0006813 "potassium ion transport" evidence=TAS

GO:0006936 "muscle contraction" evidence=TAS

GO:0008015 "blood circulation" evidence=NAS

GO:0008016 "regulation of heart contraction" evidence=TAS

GO:0015459 "potassium channel regulator activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

MGI|MGI:108495 Kcnj12 "potassium inwardly-rectifying channel, subfamily J, member 12" [Mus musculus (taxid:10090)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 126/219 (57%), Positives = 170/219 (77%)

Query:    22 YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
             YG + VTEECP A+F++  QSIVG +I +FM+G + AK++RPKKR QTLLFS NAV+  R
Sbjct:   146 YGLRCVTEECPVAVFMVVAQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVALR 205

Query:    82 DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
             DG+LCLM+RVG++R+SHI+EAHVRAQLI+ +VT EGE +P  Q ++ VG D   D+IF +
Sbjct:   206 DGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRVTEEGEYIPLDQIDIDVGFDKGLDRIFLV 265

Query:   142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
              P TI+H+I+  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL NEILWGH
Sbjct:   266 SPITILHEIDEASPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLANEILWGH 325

Query:   202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
             RFE ++ F+ E  +++++Y  F+ TYEV  TP CSA+ L
Sbjct:   326 RFEPVL-FE-EKNQYKIDYSHFHKTYEVPSTPRCSAKDL 362

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030315 "T-tubule" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0034765 "regulation of ion transmembrane transport" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52188	IRK12_RAT	No assigned EC number	0.5707	0.8537	0.5058	yes	N/A
P52187	IRK12_MOUSE	No assigned EC number	0.5707	0.8537	0.5058	yes	N/A
Q14500	IRK12_HUMAN	No assigned EC number	0.5707	0.8537	0.4988	yes	N/A
B7U540	IRK18_HUMAN	No assigned EC number	0.5570	0.8537	0.4988	yes	N/A
Q4TZY1	IRK12_BOVIN	No assigned EC number	0.5707	0.8537	0.5058	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	253
pfam01007	336	pfam01007, IRK, Inward rectifier potassium channel	1e-123

>gnl|CDD|216239 pfam01007, IRK, Inward rectifier potassium channel

 Score =  353 bits (909), Expect = e-123
 Identities = 135/224 (60%), Positives = 175/224 (78%), Gaps = 2/224 (0%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + +TEECP AIF+L LQSI+G +I AFM+G +FAK++RPKKR +TL+FS +AVI  R
Sbjct: 100 YGFRCITEECPLAIFLLILQSILGCIINAFMIGCIFAKMARPKKRAETLIFSHHAVIALR 159

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLMFRVGD+R+SH++EAHVRAQL++ +VT EGE +P +Q ++KVG D   D+IF +
Sbjct: 160 DGKLCLMFRVGDLRKSHLVEAHVRAQLLKSRVTPEGEFIPLHQIDIKVGFDTGSDRIFLV 219

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TI H I+  SPLY LSA D+    FEIVVILEG +ESTGMT QAR+SYLP EILWGH
Sbjct: 220 SPLTICHVIDERSPLYDLSAQDLKSADFEIVVILEGTVESTGMTCQARTSYLPEEILWGH 279

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAI 245
           RFE +VS +   G+++V+Y  F+ TYEV TP CSA+ LD+  +I
Sbjct: 280 RFEPVVSLEN--GKYKVDYSQFHKTYEVPTPDCSARELDEEKSI 321

Length = 336

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
KOG3827|consensus	400		100.0
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	100.0
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	97.58
KOG3713|consensus	477		97.45
KOG1419|consensus	654		94.37
KOG1545|consensus	507		94.36
PLN03192	823	Voltage-dependent potassium channel; Provisional	93.83
PRK10537	393	voltage-gated potassium channel; Provisional	93.25
KOG4390|consensus	632		88.58
KOG1418|consensus	433		88.33
KOG0498|consensus	727		87.74
TIGR02588	122	conserved hypothetical protein TIGR02588. The func	85.15
KOG3684|consensus	489		84.46

>KOG3827|consensus

Probab=100.00  E-value=2.4e-85  Score=603.64  Aligned_cols=232  Identities=60%  Similarity=1.022  Sum_probs=227.0

Q ss_pred             Cccccc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcceEEeccceEEeeeCCEEEE
Q psy4727           9 SPIDMS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCL   87 (253)
Q Consensus         9 ~~~~~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~L   87 (253)
                      |+|=.| +||||||||.|+++++||.|++++.+|+++|++++|||+|++|||++||++||+||+||++|||+.|||++||
T Consensus       115 sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKRAeTl~FS~~AVI~~RDGkLCL  194 (400)
T KOG3827|consen  115 SAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKRAETLIFSDHAVIALRDGKLCL  194 (400)
T ss_pred             hhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhheeeeccceEEEeeCCceEE
Confidence            344478 9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEEcCCCCCCCCCCHhhhccC
Q psy4727          88 MFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRE  167 (253)
Q Consensus        88 mfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~  167 (253)
                      ||||||+|+++|++|+||+.|++.++|+|||.++++|.+++++.|.+.+++||.||.|++|+|||+||||++++++|.++
T Consensus       195 mfRVgdlRkShliea~Vraqlik~~~T~EGE~ipl~q~di~vg~d~g~d~~Flv~Plti~H~IDe~SPLy~l~~~~l~~~  274 (400)
T KOG3827|consen  195 MFRVGDLRKSHLIEAHVRAQLIKTRVTKEGEVIPLHQTDIDVGFDTGSDRLFLVWPLTIYHVIDETSPLYDLSRQDLAKA  274 (400)
T ss_pred             EEEecCccccceeeEEEEEEEEEEcccCCcceeecceEEeecccCCCcCceEEEeceEEEEEcCCCCchhhhChhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeeecCCCCChHhHHH
Q psy4727         168 RFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQ  241 (253)
Q Consensus       168 ~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~~~p~~sa~~~~~  241 (253)
                      +|||+|+|+|+.|+||+|+|||+||+|+||+|||||+|+++++ ++|+|.|||++||+|++++||.|||++++|
T Consensus       275 ~FEiVViLeG~VEsTg~t~QaRTSYlp~EILWGhRF~pvv~~~-~~g~Y~VDy~~F~~T~~V~tP~csa~~l~E  347 (400)
T KOG3827|consen  275 DFEIVVILEGTVEATGMTTQARTSYLPSEILWGHRFVPVVTLE-KNGKYEVDYSNFHKTYEVPTPLCSAKELDE  347 (400)
T ss_pred             ceEEEEEEEeEEecccceeecccccchHHhhhccccceeeEec-cCCcEEEEhHHcCceeeccCCCcChhhhhh
Confidence            9999999999999999999999999999999999999999965 799999999999999999999999999997

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=100.00  E-value=2.1e-80  Score=574.82  Aligned_cols=232  Identities=52%  Similarity=0.855  Sum_probs=210.1

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEE
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRV   91 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv   91 (253)
                      .| +||||||||.++|+++||+|++++++|+++|++++|+++|++|||||||++|++||+||++|||+++||++||||||
T Consensus        91 FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~R~~tI~FS~~AVI~~~dG~~~LmfRv  170 (336)
T PF01007_consen   91 FSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKKRASTILFSKKAVIAPRDGKLCLMFRV  170 (336)
T ss_dssp             HHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGSEEE-SSEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccceEEEEeeeEEeecCCeeEEEEEe
Confidence            78 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEE
Q psy4727          92 GDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEI  171 (253)
Q Consensus        92 ~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~Ei  171 (253)
                      +|+|+++|+||+||++|++.+.++|||.+++++.+|++.++.+.+.++|.+||||+|+|||+||||++++++|+++++||
T Consensus       171 ~n~R~~~liea~Vr~~l~~~~~t~eGe~~~~~~~~L~l~~~~~~~~~~L~~p~tV~H~IDe~SPLy~~t~~~L~~~~~Ei  250 (336)
T PF01007_consen  171 ANLRKNQLIEAHVRLYLIRDRVTKEGERIRLRQQDLPLERDQGEDRPFLILPWTVVHVIDEDSPLYGLTPEDLAQADFEI  250 (336)
T ss_dssp             EESSSSSEEEEEEEEEEEEEEE-TTS-EEEEEEEEEGSSTTTTTTBEEESSEEEEEEE-STTSTTTT--HHHHHCTTEEE
T ss_pred             cCCCcCeeecceEEEEEEEeeecCCCceEEeeccccccccCCCCCceeeeCCEEEEEeCCCCCcchhhccchhccCcEEE
Confidence            99999999999999999999999999999889999999998777899999999999999999999999999999999999


Q ss_pred             EEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeeecCCCCChHhHHHHHhhc
Q psy4727         172 VVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIH  246 (253)
Q Consensus       172 iV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~~~p~~sa~~~~~~~~~~  246 (253)
                      +|+++|+||+|||++|||+||.++||+|||||+||+..  ++|+|.|||++||+++|+++|.|||+|+++..+..
T Consensus       251 vV~l~G~de~t~~~v~aR~SY~~~eI~wg~rF~~~v~~--~~g~~~VD~s~F~~t~pv~~p~~Sa~~~~~~~~~~  323 (336)
T PF01007_consen  251 VVTLEGIDESTGQTVQARTSYLPEEILWGHRFVPMVSR--EDGRYRVDFSKFHDTVPVDTPSCSAKELDEKKQQL  323 (336)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEGGGEEETEEE--SEEE--ETTEEEEEGCGTT-EEE-TS-SS-HHHHHHHHHCH
T ss_pred             EEEEEEEEeecceEEEEEEEEchHHeecCCEeeeeEEe--cCCeEEEEhHHhCCceEccCCCcCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999984  79999999999999999999999999999998853

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=97.58  E-value=5.7e-05  Score=55.67  Aligned_cols=52  Identities=19%  Similarity=0.332  Sum_probs=41.4

Q ss_pred             Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4727           9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSR   62 (253)
Q Consensus         9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSr   62 (253)
                      +.+|   .| .|.+|||||...|.  .+.+-+++.+++++|+.+.+++++.+...+.+
T Consensus        24 ~~~da~yfs~~t~tTvGyGDi~p~--t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~~   79 (79)
T PF07885_consen   24 SFIDALYFSFVTITTVGYGDIVPQ--TPAGRIFTIIYMLIGIFLFALFLSVLASVLTQ   79 (79)
T ss_dssp             SHHHHHHHHHHHHTT---SSSSTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHhcccCCCccCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4466   66 99999999999997  46788999999999999999999998887753

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>KOG3713|consensus

Probab=97.45  E-value=9.8e-05  Score=71.56  Aligned_cols=50  Identities=16%  Similarity=0.180  Sum_probs=45.6

Q ss_pred             cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727          15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR   66 (253)
Q Consensus        15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r   66 (253)
                      .|+||||||.++|.+  ..|-+++..-++.|+|+.|+=+.++|-+|++-..+
T Consensus       387 VTMTTVGYGDm~P~T--~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~  436 (477)
T KOG3713|consen  387 VTMTTVGYGDMVPVT--VLGKLVASLCILCGVLVLALPITIIVNNFSMYYSE  436 (477)
T ss_pred             EEEeeecccCccccc--cchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHH
Confidence            799999999999975  48899999999999999999999999999876554

>KOG1419|consensus

Probab=94.37  E-value=0.034  Score=55.10  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=36.0

Q ss_pred             cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4727          15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIV   56 (253)
Q Consensus        15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~Glv   56 (253)
                      .|.||||||..+|.  ...|-+|+.+=+++|+-++|+..|++
T Consensus       279 ITltTIGYGDk~P~--TWlGr~laa~fsligiSFFALPAGIL  318 (654)
T KOG1419|consen  279 ITLTTIGYGDKTPQ--TWLGRLLAACFSLIGISFFALPAGIL  318 (654)
T ss_pred             eeEEeeccCCcCcc--cchhHHHHHHHHHHHHHHHhcccccc
Confidence            69999999999986  46888999999999999999988874

>KOG1545|consensus

Probab=94.36  E-value=0.0046  Score=58.47  Aligned_cols=48  Identities=17%  Similarity=0.155  Sum_probs=40.4

Q ss_pred             cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy4727          15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPK   64 (253)
Q Consensus        15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~   64 (253)
                      .|+||||||.|+|.  .+.|-++-.+-++.|+|.-|+-+-++.+.|.-=.
T Consensus       403 VTMTTVGYGDm~P~--TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFY  450 (507)
T KOG1545|consen  403 VTMTTVGYGDMVPV--TVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY  450 (507)
T ss_pred             EEEEeeccccceec--ccCceehhhHHhhhhheEecccccEEEeccccee
Confidence            89999999999997  4688899999999999998887777776665433

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=93.83  E-value=0.054  Score=56.33  Aligned_cols=48  Identities=8%  Similarity=0.216  Sum_probs=39.6

Q ss_pred             cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy4727          15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPK   64 (253)
Q Consensus        15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~   64 (253)
                      +|+||||||..+|.+  +...+++++=+++|+.+.|+++|.+-.=+..-.
T Consensus       260 ~TmtTVGYGDi~p~t--~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~  307 (823)
T PLN03192        260 TTMTTVGYGDLHAVN--TIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT  307 (823)
T ss_pred             HHHhhccCCCcCCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999874  477888888899999999999998766544433

>PRK10537 voltage-gated potassium channel; Provisional

Probab=93.25  E-value=0.13  Score=49.41  Aligned_cols=46  Identities=17%  Similarity=0.130  Sum_probs=36.2

Q ss_pred             Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4727           9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIV   56 (253)
Q Consensus         9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~Glv   56 (253)
                      |.+|   .| .|.||+|||...|.+  +.+-++.++-.+.|+.+.+..++.+
T Consensus       168 s~~dA~y~svvt~tTvGyGdi~p~t--~~grl~~i~~ii~Gi~vf~~~is~i  217 (393)
T PRK10537        168 SLSTAFYFSIVTMSTVGYGDIVPVS--ESARLFTISVIILGITVFATSISAI  217 (393)
T ss_pred             CHHHHHHhhheeeecccCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566   66 999999999998875  4777888888889998887766543

>KOG4390|consensus

Probab=88.58  E-value=0.026  Score=54.05  Aligned_cols=48  Identities=19%  Similarity=0.219  Sum_probs=41.7

Q ss_pred             cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy4727          15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPK   64 (253)
Q Consensus        15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~   64 (253)
                      .|+||.|||.|-|++  -.|-++-.+-++.|+++-|+-+-++...|||-.
T Consensus       366 VTmTTLGYGDMVp~T--IaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY  413 (632)
T KOG4390|consen  366 VTMTTLGYGDMVPST--IAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY  413 (632)
T ss_pred             eeeeeccccccchHH--HHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence            799999999999875  367799999999999999999988888888753

>KOG1418|consensus

Probab=88.33  E-value=0.61  Score=43.16  Aligned_cols=38  Identities=16%  Similarity=0.257  Sum_probs=28.1

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHH
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFM   52 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~   52 (253)
                      -| ++.||||||..+|.++  .|=+.+++=+++|+=+..++
T Consensus       122 fs~tv~TTIGYG~i~P~T~--~Gr~~~i~YaliGIPl~li~  160 (433)
T KOG1418|consen  122 FSITVITTIGYGNIAPRTD--AGRLFTILYALVGIPLMLLI  160 (433)
T ss_pred             hhhheeeeccCCcccCCcC--cchhHHHHHHHHhhHHHHHH
Confidence            45 8999999999999765  55677777777777555444

>KOG0498|consensus

Probab=87.74  E-value=0.56  Score=48.41  Aligned_cols=50  Identities=16%  Similarity=0.262  Sum_probs=41.5

Q ss_pred             cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727          15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR   66 (253)
Q Consensus        15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r   66 (253)
                      +|.+|+|||..+++..  .=.+..++=+++|+++.|.++|-+=+=+.+-..|
T Consensus       304 ~tLstvG~g~~~s~~~--~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR  353 (727)
T KOG0498|consen  304 STLSTVGYGLVHANNM--GEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSR  353 (727)
T ss_pred             hHhhhccCCccCCCCc--HHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHH
Confidence            7899999999988754  4468888899999999999999987766665554

>TIGR02588 conserved hypothetical protein TIGR02588

Probab=85.15  E-value=19  Score=29.25  Aligned_cols=65  Identities=18%  Similarity=0.309  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHH-HHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEE
Q psy4727          44 VGVMIQAFMVGI-VFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLI  109 (253)
Q Consensus        44 ~G~l~~a~~~Gl-vfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~  109 (253)
                      +++++.+.++|+ +|..++...+.+. +.=+..-+++..+|+.+..|+|.|.-...--.++|+..|-
T Consensus        10 Is~~ill~viglv~y~~l~~~~~pp~-l~v~~~~~~r~~~gqyyVpF~V~N~gg~TAasV~V~geL~   75 (122)
T TIGR02588        10 ISTLILAAMFGLVAYDWLRYSNKAAV-LEVAPAEVERMQTGQYYVPFAIHNLGGTTAAAVNIRGELR   75 (122)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCe-EEEeehheeEEeCCEEEEEEEEEeCCCcEEEEEEEEEEEc
Confidence            444555555555 4567776665543 4444445678899999999999999987777777777664

The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.

>KOG3684|consensus

Probab=84.46  E-value=1  Score=44.06  Aligned_cols=45  Identities=20%  Similarity=0.291  Sum_probs=32.4

Q ss_pred             cccceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4727          13 MSNNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAK   59 (253)
Q Consensus        13 ~~~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaK   59 (253)
                      .+.|+.+||||.+.|.+-|.-  .++.+-.++|....|+++.++=-|
T Consensus       295 i~iTFlsiGYGDiVP~TycGr--~v~l~tGivGa~~sallvAvisRK  339 (489)
T KOG3684|consen  295 IAITFLSIGYGDIVPNTYCGR--GVALLTGIVGAGCSSLLVAVIARK  339 (489)
T ss_pred             HHHHHhhcccCcccCCccccc--hHHHHhhhhhhhHHHHHHHHHHHH
Confidence            347999999999999999874  455555677766666666555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	253
3jyc_A	343	Crystal Structure Of The Eukaryotic Strong Inward-R		5e-70
3sph_A	343	Inward Rectifier Potassium Channel Kir2.2 I223l Mut		1e-69
3spg_A	343	Inward Rectifier Potassium Channel Kir2.2 R186a Mut		3e-69
3sya_A	340	Crystal Structure Of The G Protein-Gated Inward Rec		1e-64
3syc_A	340	Crystal Structure Of The G Protein-Gated Inward Rec		4e-64
3syp_A	340	Crystal Structure Of The G Protein-Gated Inward Rec		6e-64
1u4f_A	270	Crystal Structure Of Cytoplasmic Domains Of Irk1 (K		2e-53
2xky_I	309	Single Particle Analysis Of Kir2.1nc_4 In Negative		6e-53
2gix_A	208	Cytoplasmic Domain Structure Of Kir2.1 Containing A		2e-52
2qks_A	321	Crystal Structure Of A Kir3.1-Prokaryotic Kir Chann		2e-51
3auw_B	182	Cytoplasmic Domain Of Inward Rectifier Potassium Ch		8e-50
2e4f_A	208	Crystal Structure Of The Cytoplasmic Domain Of G-Pr		1e-49
3agw_A	208	Crystal Structure Of The Cytoplasmic Domain Of G-Pr		1e-49
3k6n_A	207	Crystal Structure Of The S225e Mutant Kir3.1 Cytopl		8e-46
1u4e_A	212	Crystal Structure Of Cytoplasmic Domains Of Girk1 C		1e-45
1n9p_A	207	Crystal Structure Of The Cytoplasmic Domain Of G-pr		5e-42
2wll_A	333	Potassium Channel From Burkholderia Pseudomallei Le		3e-19
1p7b_A	333	Crystal Structure Of An Inward Rectifier Potassium		7e-19
2wli_A	301	Potassium Channel From Magnetospirillum Magnetotact		4e-14
2wln_A	301	Potassium Channel From Magnetospirillum Magnetotact		4e-14
1xl4_A	301	Intermediate Gating Structure 1 Of The Inwardly Rec		6e-14
2x6a_A	301	Potassium Channel From Magnetospirillum Magnetotact		6e-14
2x6b_A	301	Potassium Channel From Magnetospirillum Magnetotact		1e-13
3zrs_A	301	X-Ray Crystal Structure Of A Kirbac Potassium Chann		1e-13

>pdb|3JYC|A Chain A, Crystal Structure Of The Eukaryotic Strong Inward-Rectifier K+ Channel Kir2.2 At 3.1 Angstrom Resolution Length = 343

Iteration: 1
 Score =  260 bits (664), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 125/219 (57%), Positives = 170/219 (77%), Gaps = 3/219 (1%)
Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + VTEECP A+F++ +QSIVG +I +FM+G + AK++RPKKR QTLLFS NAV+  R
Sbjct: 111 YGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMR 170
Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLM+RVG++R+SHI+EAHVRAQLI+ ++T EGE +P  Q ++ VG D   D+IF +
Sbjct: 171 DGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLV 230
Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TI+H+IN  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL +EILWGH
Sbjct: 231 SPITILHEINEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGH 290
Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
           RFE ++   +E  +++V+Y  F+ TYEV  TP CSA+ L
Sbjct: 291 RFEPVLF--EEKNQYKVDYSHFHKTYEVPSTPRCSAKDL 327

>pdb|3SPH|A Chain A, Inward Rectifier Potassium Channel Kir2.2 I223l Mutant In Complex With Pip2 Length = 343

Iteration: 1
 Score =  259 bits (662), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 170/219 (77%), Gaps = 3/219 (1%)
Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + VTEECP A+F++ +QSIVG +I +FM+G + AK++RPKKR QTLLFS NAV+  R
Sbjct: 111 YGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMR 170
Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLM+RVG++R+SH++EAHVRAQLI+ ++T EGE +P  Q ++ VG D   D+IF +
Sbjct: 171 DGKLCLMWRVGNLRKSHLVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLV 230
Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TI+H+IN  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL +EILWGH
Sbjct: 231 SPITILHEINEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGH 290
Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
           RFE ++   +E  +++V+Y  F+ TYEV  TP CSA+ L
Sbjct: 291 RFEPVLF--EEKNQYKVDYSHFHKTYEVPSTPRCSAKDL 327

>pdb|3SPG|A Chain A, Inward Rectifier Potassium Channel Kir2.2 R186a Mutant In Complex With Pip2 Length = 343

Iteration: 1
 Score =  257 bits (657), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 169/219 (77%), Gaps = 3/219 (1%)
Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + VTEECP A+F++ +QSIVG +I +FM+G + AK++ PKKR QTLLFS NAV+  R
Sbjct: 111 YGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAAPKKRAQTLLFSHNAVVAMR 170
Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLM+RVG++R+SHI+EAHVRAQLI+ ++T EGE +P  Q ++ VG D   D+IF +
Sbjct: 171 DGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLV 230
Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TI+H+IN  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL +EILWGH
Sbjct: 231 SPITILHEINEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWGH 290
Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
           RFE ++   +E  +++V+Y  F+ TYEV  TP CSA+ L
Sbjct: 291 RFEPVLF--EEKNQYKVDYSHFHKTYEVPSTPRCSAKDL 327

>pdb|3SYA|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+ Channel Girk2 (Kir3.2) In Complex With Sodium And Pip2 Length = 340

Iteration: 1
 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/221 (51%), Positives = 162/221 (73%), Gaps = 2/221 (0%)
Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + +T++CPE I +L +QS++G ++ AFMVG +F K+S+PKKR +TL+FS +AVI  R
Sbjct: 108 YGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMR 167
Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLMFRVGD+R SHI+EA +RA+LI+ K T EGE +P  Q ++ VG    +D++F +
Sbjct: 168 DGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLV 227
Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P  I H+IN  SP + +S A + +E  EIVVILEG++E+TGMT QARSSY+ +EILWG+
Sbjct: 228 SPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGY 287
Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 242
           RF  +++   E G +EV+Y  F+ TYE  TP  SA+ L +L
Sbjct: 288 RFTPVLTL--EDGFYEVDYNSFHETYETSTPSLSAKELAEL 326

>pdb|3SYC|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+ Channel Girk2 (Kir3.2) D228n Mutant Length = 340

Iteration: 1
 Score =  241 bits (614), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 113/221 (51%), Positives = 162/221 (73%), Gaps = 2/221 (0%)
Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + +T++CPE I +L +QS++G ++ AFMVG +F K+S+PKKR +TL+FS +AVI  R
Sbjct: 108 YGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMR 167
Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLMFRVG++R SHI+EA +RA+LI+ K T EGE +P  Q ++ VG    +D++F +
Sbjct: 168 DGKLCLMFRVGNLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLV 227
Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P  I H+IN  SP + +S A + +E  EIVVILEG++E+TGMT QARSSY+ +EILWG+
Sbjct: 228 SPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGY 287
Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 242
           RF  +++   E G +EV+Y  F+ TYE  TP  SA+ L +L
Sbjct: 288 RFTPVLTL--EDGFYEVDYNSFHETYETSTPSLSAKELAEL 326

>pdb|3SYP|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier K+ Channel Girk2 (Kir3.2) R201a Mutant Length = 340

Iteration: 1
 Score =  240 bits (612), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 113/221 (51%), Positives = 161/221 (72%), Gaps = 2/221 (0%)
Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + +T++CPE I +L +QS++G ++ AFMVG +F K+S+PKK  +TL+FS +AVI  R
Sbjct: 108 YGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKAAETLVFSTHAVISMR 167
Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLMFRVGD+R SHI+EA +RA+LI+ K T EGE +P  Q ++ VG    +D++F +
Sbjct: 168 DGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLV 227
Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P  I H+IN  SP + +S A + +E  EIVVILEG++E+TGMT QARSSY+ +EILWG+
Sbjct: 228 SPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGY 287
Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 242
           RF  +++   E G +EV+Y  F+ TYE  TP  SA+ L +L
Sbjct: 288 RFTPVLTL--EDGFYEVDYNSFHETYETSTPSLSAKELAEL 326

>pdb|1U4F|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1) Channel Length = 270

Iteration: 1
 Score =  205 bits (522), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/177 (56%), Positives = 135/177 (76%), Gaps = 3/177 (1%)
Query: 64  KKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFY 123
           +KR +TL+FS NAVI  RDG+LCLM+RVG++R+SH++EAHVRAQL++ ++T EGE +P  
Sbjct: 29  EKRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLD 88
Query: 124 QQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTG 183
           Q ++ VG D   D+IF + P TIVH+I+  SPLY LS  D+    FEIVVILEG++E+T 
Sbjct: 89  QIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATA 148
Query: 184 MTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
           MTTQ RSSYL NEILWGHR+E ++  +K    ++V+Y  F+ TYEV +TPLCSA+ L
Sbjct: 149 MTTQCRSSYLANEILWGHRYEPVLFEEKHY--YKVDYSRFHKTYEVPNTPLCSARDL 203

>pdb|2XKY|I Chain I, Single Particle Analysis Of Kir2.1nc_4 In Negative Stain Length = 309

Iteration: 1
 Score =  203 bits (517), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 99/175 (56%), Positives = 133/175 (76%), Gaps = 3/175 (1%)
Query: 66  RTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQ 125
           R +TL+FS NAVI  RDG+LCLM+RVG++R+SH++EAHVRAQL++ ++T EGE +P  Q 
Sbjct: 70  RNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQI 129
Query: 126 ELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMT 185
           ++ VG D   D+IF + P TIVH+I+  SPLY LS  D+    FEIVVILEG++E+T MT
Sbjct: 130 DINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMT 189
Query: 186 TQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
           TQ RSSYL NEILWGHR+E ++  +K    ++V+Y  F+ TYEV +TPLCSA+ L
Sbjct: 190 TQCRSSYLANEILWGHRYEPVLFEEKHY--YKVDYSRFHKTYEVPNTPLCSARDL 242

>pdb|2GIX|A Chain A, Cytoplasmic Domain Structure Of Kir2.1 Containing Andersen's Mutation R218q And Rescue Mutation T309k Length = 208

Iteration: 1
 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/177 (55%), Positives = 134/177 (75%), Gaps = 3/177 (1%)
Query: 64  KKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFY 123
           +KR +TL+FS NAVI  RDG+LCLM+RVG++++SH++EAHVRAQL++ ++T EGE +P  
Sbjct: 24  EKRNETLVFSHNAVIAMRDGKLCLMWRVGNLQKSHLVEAHVRAQLLKSRITSEGEYIPLD 83
Query: 124 QQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTG 183
           Q ++ VG D   D+IF + P TIVH+I+  SPLY LS  D+    FEIVVILEG++E+T 
Sbjct: 84  QIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATA 143
Query: 184 MTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEV-HTPLCSAQAL 239
           MT Q RSSYL NEILWGHR+E ++   +E   ++V+Y  F+ TYEV +TPLCSA+ L
Sbjct: 144 MTKQCRSSYLANEILWGHRYEPVLF--EEKHYYKVDYSRFHKTYEVPNTPLCSARDL 198

>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel Chimera Length = 321

Iteration: 1
 Score =  198 bits (504), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 2/210 (0%)
Query: 34  AIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGD 93
           A +I  L+  VG+   A   G  F K+S+PKKR +TL+FS +AVI  RDG+L LMFRVG+
Sbjct: 105 AHWIATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGN 164
Query: 94  MRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPM 153
           +R SH++ A +R +L++ + T EGE LP  Q EL VG     D++F + P TI H I+  
Sbjct: 165 LRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAK 224
Query: 154 SPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKET 213
           SP Y LS   M  E+FE+VVILEG++E+TGMT QAR+SY  +E+LWGHRF  ++S   E 
Sbjct: 225 SPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISL--EE 282
Query: 214 GEHEVNYGLFNNTYEVHTPLCSAQALDQLL 243
           G  +V+Y  F+ T+EV TP  S +  +++L
Sbjct: 283 GFFKVDYSQFHATFEVPTPPYSVKEQEEML 312

>pdb|3AUW|B Chain B, Cytoplasmic Domain Of Inward Rectifier Potassium Channel Kir3.2 In Complex With Cadmium Length = 182

Iteration: 1
 Score =  193 bits (490), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 93/178 (52%), Positives = 128/178 (71%), Gaps = 2/178 (1%)
Query: 65  KRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQ 124
           KR +TL+FS +AVI  RDG+LCLMFRVGD+R SHI+EA +RA+LI+ K T EGE +P  Q
Sbjct: 1   KRAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQ 60
Query: 125 QELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGM 184
            ++ VG    +D++F + P  I H+IN  SP + +S A + +E  EIVVILEG++E+TGM
Sbjct: 61  TDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGM 120
Query: 185 TTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 242
           T QARSSY+ +EILWG+RF  +++   E G +EV+Y  F+ TYE  TP  SA+ L +L
Sbjct: 121 TCQARSSYITSEILWGYRFTPVLTL--EDGFYEVDYNSFHETYETSTPSLSAKELAEL 176

>pdb|2E4F|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2 Length = 208

Iteration: 1
 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 129/179 (72%), Gaps = 2/179 (1%)
Query: 64  KKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFY 123
           +KR +TL+FS +AVI  RDG+LCLMFRVGD+R SHI+EA +RA+LI+ K T EGE +P  
Sbjct: 26  EKRAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLN 85
Query: 124 QQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTG 183
           Q ++ VG    +D++F + P  I H+IN  SP + +S A + +E  EIVVILEG++E+TG
Sbjct: 86  QTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATG 145
Query: 184 MTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 242
           MT QARSSY+ +EILWG+RF  +++   E G +EV+Y  F+ TYE  TP  SA+ L +L
Sbjct: 146 MTCQARSSYITSEILWGYRFTPVLTL--EDGFYEVDYNSFHETYETSTPSLSAKELAEL 202

>pdb|3AGW|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-Protein-Gated Inward Rectifier Potassium Channel Kir3.2 In The Absence Of Na+ Length = 208

Iteration: 1
 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 129/179 (72%), Gaps = 2/179 (1%)
Query: 64  KKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFY 123
           +KR +TL+FS +AVI  RDG+LCLMFRVGD+R SHI+EA +RA+LI+ K T EGE +P  
Sbjct: 26  EKRAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLN 85
Query: 124 QQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTG 183
           Q ++ VG    +D++F + P  I H+IN  SP + +S A + +E  EIVVILEG++E+TG
Sbjct: 86  QTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATG 145
Query: 184 MTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 242
           MT QARSSY+ +EILWG+RF  +++   E G +EV+Y  F+ TYE  TP  SA+ L +L
Sbjct: 146 MTCQARSSYITSEILWGYRFTPVLTL--EDGFYEVDYNSFHETYETSTPSLSAKELAEL 202

>pdb|3K6N|A Chain A, Crystal Structure Of The S225e Mutant Kir3.1 Cytoplasmic Pore Domain Length = 207

Iteration: 1
 Score =  180 bits (456), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/179 (49%), Positives = 124/179 (69%), Gaps = 2/179 (1%)
Query: 65  KRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQ 124
           +R +TL+FS +AVI  RDG+L LMFRVG++R SH++EA +R +L++ + T EGE LP  Q
Sbjct: 25  ERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVEAQIRCKLLKSRQTPEGEFLPLDQ 84
Query: 125 QELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGM 184
            EL VG     D++F + P TI H I+  SP Y LS   M  E+FE+VVILEG++E+TGM
Sbjct: 85  LELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGM 144
Query: 185 TTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLL 243
           T QAR+SY  +E+LWGHRF  ++S   E G  +V+Y  F+ T+EV TP  S +  +++L
Sbjct: 145 TCQARTSYTEDEVLWGHRFFPVISL--EEGFFKVDYSQFHATFEVPTPPYSVKEQEEML 201

>pdb|1U4E|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Girk1 Channel Length = 212

Iteration: 1
 Score =  179 bits (455), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/180 (48%), Positives = 124/180 (68%), Gaps = 2/180 (1%)
Query: 64  KKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFY 123
           +KR +TL+FS +AVI  RDG+L LMFRVG++R SH++ A +R +L++ + T EGE LP  
Sbjct: 29  EKRAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLD 88
Query: 124 QQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTG 183
           Q EL VG     D++F + P TI H I+  SP Y LS   M  E+FE+VVILEG++E+TG
Sbjct: 89  QLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTG 148
Query: 184 MTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLL 243
           MT QAR+SY  +E+LWGHRF  ++S   E G  +V+Y  F+ T+EV TP  S +  +++L
Sbjct: 149 MTCQARTSYTEDEVLWGHRFFPVISL--EEGFFKVDYSQFHATFEVPTPPYSVKEQEEML 206

>pdb|1N9P|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-protein Activated Inward Rectifier Potassium Channel 1 Length = 207

Iteration: 1
 Score =  167 bits (423), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/179 (46%), Positives = 117/179 (65%), Gaps = 2/179 (1%)
Query: 65  KRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQ 124
           +R +TL FS +AVI  RDG+L L FRVG++R SH + A +R +L++ + T EGE LP  Q
Sbjct: 25  ERAETLXFSEHAVISXRDGKLTLXFRVGNLRNSHXVSAQIRCKLLKSRQTPEGEFLPLDQ 84
Query: 125 QELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGM 184
            EL VG     D++F + P TI H I+  SP Y LS      E+FE+VVILEG++E+TG 
Sbjct: 85  LELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSXQTEQFEVVVILEGIVETTGX 144
Query: 185 TTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLL 243
           T QAR+SY  +E+LWGHRF  ++S   E G  +V+Y  F+ T+EV TP  S +  ++ L
Sbjct: 145 TCQARTSYTEDEVLWGHRFFPVISL--EEGFFKVDYSQFHATFEVPTPPYSVKEQEEXL 201

>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei Length = 333

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 112/205 (54%), Gaps = 14/205 (6%)
Query: 32  PEAIF---ILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLM 88
           P+ ++   I  L+  VG+   A   G+VFA+ +RP+ +   ++F+R+A++   +G + LM
Sbjct: 118 PQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK---IMFARHAIVRPFNGRMTLM 174
Query: 89  FRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI-WPTTIV 147
            R  + R++ I EA  + +L+R++ + EG  L     +LK+  +  E  IF + W   ++
Sbjct: 175 VRAANARQNVIAEARAKMRLMRRRESSEGYSL-MKLHDLKLVRN--EHPIFLLGW--NMM 229
Query: 148 HKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLV 207
           H I+  SPL+  +   +   R  ++V++EG  E+T    QAR ++  ++I W HR+  L+
Sbjct: 230 HVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWHHRYVDLM 289
Query: 208 SFKKETGEHEVNYGLFNNTYEVHTP 232
           S     G   ++Y  FN+T  V  P
Sbjct: 290 S--DVDGMTHIDYTRFNDTEPVEPP 312

>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel Length = 333

Iteration: 1
 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 112/205 (54%), Gaps = 14/205 (6%)
Query: 32  PEAIF---ILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLM 88
           P+ ++   I  L+  VG+   A   G+VFA+ +RP+ +   ++F+R+A++   +G + LM
Sbjct: 118 PQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK---IMFARHAIVRPFNGRMTLM 174
Query: 89  FRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI-WPTTIV 147
            R  + R++ I EA  + +L+R++ + EG  L     +LK+  +  E  IF + W   ++
Sbjct: 175 VRAANARQNVIAEARAKMRLMRREHSSEGYSL-MKIHDLKLVRN--EHPIFLLGW--NMM 229
Query: 148 HKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLV 207
           H I+  SPL+  +   +   R  ++V++EG  E+T    QAR ++  ++I W HR+  L+
Sbjct: 230 HVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWHHRYVDLM 289
Query: 208 SFKKETGEHEVNYGLFNNTYEVHTP 232
           S     G   ++Y  FN+T  V  P
Sbjct: 290 S--DVDGMTHIDYTRFNDTEPVEPP 312

>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 9/173 (5%)
Query: 32  PEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRV 91
           P A  ++ L+++ G++  A    +++A+ +RP   T  +LFS   VI   +G+  LM R+
Sbjct: 107 PLANTLVTLEALCGMLGLAVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRL 163
Query: 92  GDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI-WPTTIVHKI 150
            ++R   IIEA V   L+R +++ EG +   +    +         IF + W  T++H I
Sbjct: 164 ANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDLTRTRS---RSPIFSLSW--TVMHPI 218
Query: 151 NPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRF 203
           +  SP+Y  +   +     E +V+  G  E+      AR +Y  +EI+WG  F
Sbjct: 219 DHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHF 271

>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 10/194 (5%)
Query: 32  PEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRV 91
           P A  ++ L+++ G++  A    +++A+ +RP   T  +LFS   VI   +G+  LM R+
Sbjct: 107 PLANTLVTLEALCGMLGLAVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRL 163
Query: 92  GDMRRSHIIEAHVRAQLIRKKVTLEGELL-PFYQQELKVGGDGIEDKIFFIWPTTIVHKI 150
            ++R   IIEA V   L+R +++ EG +   F+   L      I     F    T++H I
Sbjct: 164 ANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDLTLTRSRSPI-----FSLSWTVMHPI 218
Query: 151 NPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFK 210
           +  SP+Y  +   +     E +V+  G  E+      AR +Y  +EI+WG  F  + +  
Sbjct: 219 DHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHFVDVFTTL 278
Query: 211 KETGEHEVNYGLFN 224
            + G   ++ G F+
Sbjct: 279 PD-GRRAIDLGKFH 291

>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying K+ Channel Kirbac3.1 Length = 301

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
Query: 32  PEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRV 91
           P A  ++ L+++ G++  A    +++A+ +RP   T  +LFS   VI   +G+  LM R+
Sbjct: 107 PLANTLVTLEALCGMLGLAVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRL 163
Query: 92  GDMRRSHIIEAHVRAQLIRKKVTLEGELL-PFYQQELKVGGDGIEDKIFFIWPTTIVHKI 150
            ++R   IIEA V   L+R +++ EG +   F+   L      I     F    T++H I
Sbjct: 164 ANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDLTLTRSRSPI-----FSLSWTVMHPI 218
Query: 151 NPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRF 203
           +  SP+Y  +   +     E +V+  G  E+      AR +Y  +EI+WG  F
Sbjct: 219 DHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHF 271

>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 95/194 (48%), Gaps = 10/194 (5%)
Query: 32  PEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRV 91
           P A  ++ L+++ G++  A    +++A+ +RP   T  +LFS   VI   +G+  LM R+
Sbjct: 107 PLANTLVTLEALCGMLGLAVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRL 163
Query: 92  GDMRRSHIIEAHVRAQLIRKKVTLEGELL-PFYQQELKVGGDGIEDKIFFIWPTTIVHKI 150
            ++R   IIEA V   L+R +V+ EG +   F+   L      I     F    T++H I
Sbjct: 164 ANLRIEAIIEADVHLVLVRSEVSQEGMVFRRFHDLTLTRSRSPI-----FSLSWTVMHPI 218
Query: 151 NPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFK 210
           +  SP+Y  +   +     E +V+  G  E+      AR +Y  +EI+WG  F  + +  
Sbjct: 219 DHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHFVDVFTTL 278
Query: 211 KETGEHEVNYGLFN 224
            + G   ++ G F+
Sbjct: 279 PD-GRRALDLGKFH 291

>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum Length = 301

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
Query: 32  PEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRV 91
           P A  ++ L+++ G++  A    +++A+ +RP   T  +LFS   VI   +G+  LM R+
Sbjct: 107 PLANTLVTLEALCGMLGLAVAASLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRL 163
Query: 92  GDMRRSHIIEAHVRAQLIRKKVTLEGELL-PFYQQELKVGGDGIEDKIFFIWPTTIVHKI 150
            ++R   IIEA V   L+R +++ EG +   F+   L      I     F    T++H I
Sbjct: 164 ANLRIEAIIEADVHLVLVRSEISQEGMVFRRFHDLTLTRSRSPI-----FSLSWTVMHPI 218
Query: 151 NPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRF 203
           +  SP+Y  +   +     E +V+  G  E+      AR +Y  +EI+WG  F
Sbjct: 219 DHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHF 271

>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel Highlights A Mechanism Of Channel Opening At The Bundle-Crossing Gate Length = 301

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
Query: 32  PEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRV 91
           P A  ++ L+++ G++  A    +++A+ +RP   T  +LFS   VI   +G+  LM R+
Sbjct: 107 PLANTLVTLEALCGMLGLAVAARLIYARFTRP---TAGVLFSSRMVISDFEGKPTLMMRL 163
Query: 92  GDMRRSHIIEAHVRAQLIRKKVTLEGELL-PFYQQELKVGGDGIEDKIFFIWPTTIVHKI 150
            ++R   IIEA V   L+R +++ EG +   F+   L      I     F    T++H I
Sbjct: 164 ANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDLTLTRSRSPI-----FSLSWTVMHPI 218
Query: 151 NPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRF 203
           +  SP+Y  +   +     E +V+  G  E+      AR +Y  +EI+WG  F
Sbjct: 219 DHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHF 271
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
3sya_A	340	G protein-activated inward rectifier potassium CH;	2e-93
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	1e-92
2xky_I	309	Inward rectifier potassium channel 2; ION channel,	8e-90
2gix_A	208	Inward rectifier potassium channel 2; cytoplasmic	2e-86
1n9p_A	207	GIRK1, G protein-activated inward rectifier potass	1e-85
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	2e-85
3agw_A	208	KIR3.2, G protein-activated inward rectifier potas	1e-84
1u4f_A	270	Inward rectifier potassium channel 2; cytoplasmic	2e-83
1p7b_A	333	Integral membrane channel and cytosolic domains; t	6e-77
1xl4_A	301	Inward rectifier potassium channel; integral membr	2e-71
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340

 Score =  277 bits (709), Expect = 2e-93
 Identities = 113/221 (51%), Positives = 162/221 (73%), Gaps = 2/221 (0%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG + +T++CPE I +L +QS++G ++ AFMVG +F K+S+PKKR +TL+FS +AVI  R
Sbjct: 108 YGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMR 167

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+LCLMFRVGD+R SHI+EA +RA+LI+ K T EGE +P  Q ++ VG    +D++F +
Sbjct: 168 DGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLV 227

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P  I H+IN  SP + +S A + +E  EIVVILEG++E+TGMT QARSSY+ +EILWG+
Sbjct: 228 SPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGY 287

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQL 242
           RF  +++ +   G +EV+Y  F+ TYE  TP  SA+ L +L
Sbjct: 288 RFTPVLTLED--GFYEVDYNSFHETYETSTPSLSAKELAEL 326

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343

 Score =  275 bits (704), Expect = 1e-92
 Identities = 125/233 (53%), Positives = 173/233 (74%), Gaps = 3/233 (1%)

Query: 21  SYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQ 80
            YG + VTEECP A+F++ +QSIVG +I +FM+G + AK++RPKKR QTLLFS NAV+  
Sbjct: 110 GYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAM 169

Query: 81  RDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFF 140
           RDG+LCLM+RVG++R+SHI+EAHVRAQLI+ ++T EGE +P  Q ++ VG D   D+IF 
Sbjct: 170 RDGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFL 229

Query: 141 IWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWG 200
           + P TI+H+IN  SPL+ +S  D+  + FEIVVILEG++E+T MTTQARSSYL +EILWG
Sbjct: 230 VSPITILHEINEDSPLFGISRQDLETDDFEIVVILEGMVEATAMTTQARSSYLASEILWG 289

Query: 201 HRFETLVSFKKETGEHEVNYGLFNNTYEVH-TPLCSAQALDQLLAIHGTTKSN 252
           HRFE ++  +K   +++V+Y  F+ TYEV  TP CSA+ L +   +   +   
Sbjct: 290 HRFEPVLFEEK--NQYKVDYSHFHKTYEVPSTPRCSAKDLVENKFLLSNSLEV 340

>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus} Length = 309

 Score =  267 bits (683), Expect = 8e-90
 Identities = 103/233 (44%), Positives = 149/233 (63%), Gaps = 13/233 (5%)

Query: 13  MSNNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLS---RPKKRTQT 69
           ++  ++ N +G  +      +       Q     + +     + F  +    +   R +T
Sbjct: 21  LATMAVANGFGNGKSKVHTRQ-------QCRSRFVKKDGHCNVQFINVGEKGQRGGRNET 73

Query: 70  LLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKV 129
           L+FS NAVI  RDG+LCLM+RVG++R+SH++EAHVRAQL++ ++T EGE +P  Q ++ V
Sbjct: 74  LVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINV 133

Query: 130 GGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQAR 189
           G D   D+IF + P TIVH+I+  SPLY LS  D+    FEIVVILEG++E+T MTTQ R
Sbjct: 134 GFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCR 193

Query: 190 SSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVH-TPLCSAQALDQ 241
           SSYL NEILWGHR+E ++   +E   ++V+Y  F+ TYEV  TPLCSA+ L +
Sbjct: 194 SSYLANEILWGHRYEPVLF--EEKHYYKVDYSRFHKTYEVPNTPLCSARDLAE 244

>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus} Length = 208

 Score =  254 bits (651), Expect = 2e-86
 Identities = 98/193 (50%), Positives = 136/193 (70%), Gaps = 3/193 (1%)

Query: 50  AFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLI 109
                     ++  +KR +TL+FS NAVI  RDG+LCLM+RVG++++SH++EAHVRAQL+
Sbjct: 10  KKDGHCNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLQKSHLVEAHVRAQLL 69

Query: 110 RKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERF 169
           + ++T EGE +P  Q ++ VG D   D+IF + P TIVH+I+  SPLY LS  D+    F
Sbjct: 70  KSRITSEGEYIPLDQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADF 129

Query: 170 EIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEV 229
           EIVVILEG++E+T MT Q RSSYL NEILWGHR+E ++  +K    ++V+Y  F+ TYEV
Sbjct: 130 EIVVILEGMVEATAMTKQCRSSYLANEILWGHRYEPVLFEEK--HYYKVDYSRFHKTYEV 187

Query: 230 H-TPLCSAQALDQ 241
             TPLCSA+ L +
Sbjct: 188 PNTPLCSARDLAE 200

>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A Length = 207

 Score =  252 bits (646), Expect = 1e-85
 Identities = 87/200 (43%), Positives = 129/200 (64%), Gaps = 4/200 (2%)

Query: 46  VMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVR 105
            + +     +    L    +R +TL+FS +AVI  RDG+L LMFRVG++R SH++ A +R
Sbjct: 8   FVDKNGRCNVQHGNL--GSERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIR 65

Query: 106 AQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADML 165
            +L++ + T EGE LP  Q EL VG     D++F + P TI H I+  SP Y LS   M 
Sbjct: 66  CKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQ 125

Query: 166 RERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNN 225
            E+FE+VVILEG++E+TGMT QAR+SY  +E+LWGHRF  ++S ++  G  +V+Y  F+ 
Sbjct: 126 TEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEE--GFFKVDYSQFHA 183

Query: 226 TYEVHTPLCSAQALDQLLAI 245
           T+EV TP  S +  +++L +
Sbjct: 184 TFEVPTPPYSVKEQEEMLLM 203

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score =  256 bits (655), Expect = 2e-85
 Identities = 101/224 (45%), Positives = 146/224 (65%), Gaps = 4/224 (1%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG   +  +   A +I  L+  VG+   A   G  F K+S+PKKR +TL+FS +AVI  R
Sbjct: 95  YGD--MHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISMR 152

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           DG+L LMFRVG++R SH++ A +R +L++ + T EGE LP  Q EL VG     D++F +
Sbjct: 153 DGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLV 212

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
            P TI H I+  SP Y LS   M  E+FE+VVILEG++E+TGMT QAR+SY  +E+LWGH
Sbjct: 213 SPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGH 272

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAI 245
           RF  ++S ++  G  +V+Y  F+ T+EV TP  S +  +++L +
Sbjct: 273 RFFPVISLEE--GFFKVDYSQFHATFEVPTPPYSVKEQEEMLLM 314

>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A Length = 208

 Score =  250 bits (639), Expect = 1e-84
 Identities = 91/191 (47%), Positives = 129/191 (67%), Gaps = 4/191 (2%)

Query: 54  GIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKV 113
            +    +     R +TL+FS +AVI  RDG+LCLMFRVGD+R SHI+EA +RA+LI+ K 
Sbjct: 18  NVHHGNVREK--RAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQ 75

Query: 114 TLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVV 173
           T EGE +P  Q ++ VG    +D++F + P  I H+IN  SP + +S A + +E  EIVV
Sbjct: 76  TSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEIVV 135

Query: 174 ILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPL 233
           ILEG++E+TGMT QARSSY+ +EILWG+RF  +++ +   G +EV+Y  F+ TYE  TP 
Sbjct: 136 ILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTLED--GFYEVDYNSFHETYETSTPS 193

Query: 234 CSAQALDQLLA 244
            SA+ L +L  
Sbjct: 194 LSAKELAELAN 204

>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus} Length = 270

 Score =  249 bits (636), Expect = 2e-83
 Identities = 100/187 (53%), Positives = 137/187 (73%), Gaps = 3/187 (1%)

Query: 56  VFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTL 115
               ++  +KR +TL+FS NAVI  RDG+LCLM+RVG++R+SH++EAHVRAQL++ ++T 
Sbjct: 21  NVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITS 80

Query: 116 EGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVIL 175
           EGE +P  Q ++ VG D   D+IF + P TIVH+I+  SPLY LS  D+    FEIVVIL
Sbjct: 81  EGEYIPLDQIDINVGFDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVIL 140

Query: 176 EGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVH-TPLC 234
           EG++E+T MTTQ RSSYL NEILWGHR+E ++  +K    ++V+Y  F+ TYEV  TPLC
Sbjct: 141 EGMVEATAMTTQCRSSYLANEILWGHRYEPVLFEEK--HYYKVDYSRFHKTYEVPNTPLC 198

Query: 235 SAQALDQ 241
           SA+ L +
Sbjct: 199 SARDLAE 205

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Length = 333

 Score =  235 bits (600), Expect = 6e-77
 Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 11/220 (5%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG          AI    L+  VG+   A   G+VFA+ +RP+ +     F+R+A++   
Sbjct: 113 YGDMHPQTVYAHAIA--TLEIFVGMSGIALSTGLVFARFARPRAKIM---FARHAIVRPF 167

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           +G + LM R  + R++ I EA  + +L+R++ + EG  L     +LK+  +       F+
Sbjct: 168 NGRMTLMVRAANARQNVIAEARAKMRLMRREHSSEGYSLMKIH-DLKLVRNEH---PIFL 223

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
               ++H I+  SPL+  +   +   R  ++V++EG  E+T    QAR ++  ++I W H
Sbjct: 224 LGWNMMHVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWHH 283

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQ 241
           R+  L+S     G   ++Y  FN+T  V  P  +  A   
Sbjct: 284 RYVDLMS--DVDGMTHIDYTRFNDTEPVEPPGAAPDAQAF 321

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score =  219 bits (560), Expect = 2e-71
 Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 10/211 (4%)

Query: 22  YGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQR 81
           YG   +    P A  ++ L+++ G++  A    +++A+ +RP       LFS   VI   
Sbjct: 99  YGK--LIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAGV---LFSSRMVISDF 153

Query: 82  DGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFI 141
           +G+  LM R+ ++R   IIEA V   L+R +++ EG +   +                F 
Sbjct: 154 EGKPTLMMRLANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDL----TLTRSRSPIFS 209

Query: 142 WPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGH 201
              T++H I+  SP+Y  +   +     E +V+  G  E+      AR +Y  +EI+WG 
Sbjct: 210 LSWTVMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGG 269

Query: 202 RFETLVSFKKETGEHEVNYGLFNNTYEVHTP 232
            F  + +   + G   ++ G F+   + H  
Sbjct: 270 HFVDVFTTLPD-GRRALDLGKFHEIAQHHHH 299

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 36/272 (13%), Positives = 83/272 (30%), Gaps = 73/272 (26%)

Query: 30  ECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMF 89
             PE +  + LQ ++  +   +      +  S  K R  ++      ++  +  E CL+ 
Sbjct: 193 NSPETVLEM-LQKLLYQIDPNWTSRSDHS--SNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 90  RVGDMRRSHIIEA-HVRAQLI----------------RKKVTLEGELLPFYQQE-----L 127
            + +++ +    A ++  +++                   ++L+   +     E     L
Sbjct: 250 -LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 128 KVGGDGIED-----------KIFFIW------PTTI----------VHKINPMSPLYTLS 160
           K      +D           ++  I         T           +  I   S L  L 
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLE 367

Query: 161 AADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNY 220
            A+  R+ F+ + +      S  + T      L   ++W    ++ V            Y
Sbjct: 368 PAEY-RKMFDRLSVFP---PSAHIPTIL----L--SLIWFDVIKSDVM---VVVNKLHKY 414

Query: 221 GLFN-----NTYEVHTPLCSAQA-LDQLLAIH 246
            L       +T  + +     +  L+   A+H
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
3sya_A	340	G protein-activated inward rectifier potassium CH;	100.0
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	100.0
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	100.0
2gix_A	208	Inward rectifier potassium channel 2; cytoplasmic	100.0
1u4f_A	270	Inward rectifier potassium channel 2; cytoplasmic	100.0
1n9p_A	207	GIRK1, G protein-activated inward rectifier potass	100.0
3agw_A	208	KIR3.2, G protein-activated inward rectifier potas	100.0
1xl4_A	301	Inward rectifier potassium channel; integral membr	100.0
2xky_I	309	Inward rectifier potassium channel 2; ION channel,	100.0
1p7b_A	333	Integral membrane channel and cytosolic domains; t	100.0
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	98.04
2a9h_A	155	Voltage-gated potassium channel; potassium channel	97.84
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	97.64
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	97.54
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	97.51
3ouf_A	97	Potassium channel protein; ION channel, membrane,	97.43
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	97.42
2q67_A	114	Potassium channel protein; inverted teepee, helix	97.37
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	97.25
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	97.23
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	96.72
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	96.67
1lnq_A	336	MTHK channels, potassium channel related protein;	96.1
3um7_A	309	Potassium channel subfamily K member 4; potassium	96.09
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.88
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	95.76
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	95.7
3um7_A	309	Potassium channel subfamily K member 4; potassium	93.43
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	92.73
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	80.49

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=100.00  E-value=1.8e-78  Score=561.05  Aligned_cols=231  Identities=50%  Similarity=0.853  Sum_probs=225.1

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEE
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRV   91 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv   91 (253)
                      .| +|+||||||.++|+++||.|.+++++|+++|+++.|+++|++|+||+||++|++||+||++|||+++||++|||||+
T Consensus        98 fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ra~ti~FS~~AVI~~~dG~~~LmfRv  177 (340)
T 3sya_A           98 FSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLVFSTHAVISMRDGKLCLMFRV  177 (340)
T ss_dssp             HHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGGEEECSCEEEEEETTEEEEEEEE
T ss_pred             hhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCceEEecceEEEeccCCeEEEEEEE
Confidence            67 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEE
Q psy4727          92 GDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEI  171 (253)
Q Consensus        92 ~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~Ei  171 (253)
                      +|+|+++|+||+||+++++.+.|+|||.+++++.++++.+|.+.+++||.+||||+|+|||+||||++++++|+++++||
T Consensus       178 ~n~R~~~liea~vr~~l~~~~~t~eGe~~~l~~~~l~~~~d~~~~~~fl~~p~tv~H~Ide~SPL~~~t~~~L~~~~~Ei  257 (340)
T 3sya_A          178 GDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQSPFWEISKAQLPKEELEI  257 (340)
T ss_dssp             EECSSSCEEEEEEEEEEECCEECTTSCEETTCEEEECSSTTTTTTSCCCSSCEEEEEECCTTSTTTTCCTTTGGGCCCEE
T ss_pred             ecCCCCeEEEEEEEEEEEEEEecCCCceEeeEEeeeceeccCCCCcceeeccEEEEEECCCCCCccccChhHHhhCCeEE
Confidence            99999999999999999999999999999989999999999888999999999999999999999999999999999999


Q ss_pred             EEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeeecCCCCChHhHHHHHhh
Q psy4727         172 VVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAI  245 (253)
Q Consensus       172 iV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~~~p~~sa~~~~~~~~~  245 (253)
                      +|+++|+||+|||++|||+||.++||+|||||+||+.  .++|+|.|||++||+++|+++|.|||+|++|..+-
T Consensus       258 vV~l~G~de~t~~t~qaR~SY~~~eI~wg~rF~~ii~--~~~g~~~vD~s~F~~~~~v~~p~csa~~~~~~~~~  329 (340)
T 3sya_A          258 VVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLT--LEDGFYEVDYNSFHETYETSTPSLSAKELAELANR  329 (340)
T ss_dssp             EEEEEEEESSSCCEEEEEEEEEGGGEEETEEECCCEE--EETTEEEECGGGSSCEEECCCCCSCHHHHHHHHHH
T ss_pred             EEEEEEEeccccceEEEEEEEcHHHEecCCEeceeEE--cCCCeEEEEhHHcCcceEcCCCCCCHHHHHHHHhh
Confidence            9999999999999999999999999999999999998  35899999999999999999999999999988763

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=100.00  E-value=7.8e-78  Score=557.43  Aligned_cols=233  Identities=54%  Similarity=0.894  Sum_probs=225.7

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEE
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRV   91 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv   91 (253)
                      .| +|+||||||.++|+++||.|.+++++|+++|+++.|+++|++||||+||++|++||+||++|||+++||++|||||+
T Consensus       101 fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r~~ti~FS~~AVI~~~dG~~~LmfRv  180 (343)
T 3spc_A          101 FSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQTLLFSHNAVVAMRDGKLCLMWRV  180 (343)
T ss_dssp             HHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCCEEECSCEEEEEETTEEEEEEEE
T ss_pred             eeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCcEEeccceEEecCCCcEEEEEEE
Confidence            77 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEE
Q psy4727          92 GDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEI  171 (253)
Q Consensus        92 ~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~Ei  171 (253)
                      +|+|+++|+||+||++|++.++|+|||.+++++.++++.+|.+.+++||.+||||+|+|||+||||++++++|+++++||
T Consensus       181 ~n~R~~~liea~vr~~l~r~~~t~eGe~~~l~~~~l~~~~d~~~~~~fl~~p~tv~H~IDe~SPL~~~t~~~L~~~~~Ei  260 (343)
T 3spc_A          181 GNLRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEINEDSPLFGISRQDLETDDFEI  260 (343)
T ss_dssp             EESSSSCEEEEEEEEEEEEEEECTTSCEEEEEEEEECSSGGGTTTBCCCSSCEEEEEECCTTSTTTTCCHHHHTTCCCEE
T ss_pred             ecCCCCeEEEEEEEEEEEEEEEcCCCcEEeeEEEEeeecccCCCCcceeeccEEEEEeCCCCCCcccCCHHHHhhCCeEE
Confidence            99999999999999999999999999999999999999998888899999999999999999999999999999999999


Q ss_pred             EEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeeec-CCCCChHhHHHHHhhcC
Q psy4727         172 VVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVH-TPLCSAQALDQLLAIHG  247 (253)
Q Consensus       172 iV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~~-~p~~sa~~~~~~~~~~~  247 (253)
                      +|+++|+||+|||++|||+||.++||+|||||+||+.  .++|+|.|||++||+++|++ +|.|||+|++|.+.+.+
T Consensus       261 vV~l~G~de~t~~t~qaR~SY~~~eI~wg~rF~~ii~--~~~g~~~vD~s~F~~~~~v~~tp~csa~~~~~~~~~~~  335 (343)
T 3spc_A          261 VVILEGMVEATAMTTQARSSYLASEILWGHRFEPVLF--EEKNQYKVDYSHFHKTYEVPSTPRCSAKDLVENKFLLS  335 (343)
T ss_dssp             EEEEEEEETTTCSEEEEEEEEEGGGEEETEEECCCEE--EETTEEEECGGGTTCEEECTTSCCSCHHHHHHHHHHHH
T ss_pred             EEEEEEEecccCcEEEEEEEEchHHeecCCEeeeeEE--cCCCeEEEEhHHcCCcccCCCCCCCCHHHHhhhhhhcC
Confidence            9999999999999999999999999999999999998  35899999999999999995 99999999999876643

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=100.00  E-value=2.6e-69  Score=497.44  Aligned_cols=236  Identities=43%  Similarity=0.708  Sum_probs=219.5

Q ss_pred             Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcceEEeccceEEeeeCCE
Q psy4727           9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGE   84 (253)
Q Consensus         9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~   84 (253)
                      |..|   .| .|+||||||.++|.  .+.|-+++++++++|+++.|+++|++++||++|++|+++++||++||||++||+
T Consensus        78 s~~~a~y~s~vT~tTVGYGDi~P~--t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~r~~~i~fS~~avI~~~~g~  155 (321)
T 2qks_A           78 GFGGAFFFSVETLATVGYGDMHPQ--TVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKRAETLMFSEHAVISMRDGK  155 (321)
T ss_dssp             THHHHHHHHHHHHTTCCCCSSCBC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGTEEECSCEEEEEETTE
T ss_pred             chhheeeeeeEEeccccCCCcCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCceEEecCCCc
Confidence            4455   66 99999999999886  568899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEEcCCCCCCCCCCHhhh
Q psy4727          85 LCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADM  164 (253)
Q Consensus        85 ~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L  164 (253)
                      +|||||++|+|+++++||+||+++++.+.|+|||.+++++.+|++++|.+.+.++|.+||||+|+|||+||||++++++|
T Consensus       156 ~~L~fRv~n~r~~~li~a~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~Id~~SPL~~~~~~~L  235 (321)
T 2qks_A          156 LTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSM  235 (321)
T ss_dssp             EEEEEEEEECSCCCEEEEEEEEEEEEEEECTTCCEEEEEEEEECSSTTTTTTBCCCSSCEEEEEECSTTSTTTTCCHHHH
T ss_pred             eEEEEEecccccCeeeeeEEEEEEEEEEecCCCcEEEeEEeeeecccCCCCCceEEEccEEEEEECCCCCCccccCHhHH
Confidence            99999999999999999999999999999999999999999999998887889999999999999999999999999999


Q ss_pred             ccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeeecCCCCChHhHHHHHh
Q psy4727         165 LRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLCSAQALDQLLA  244 (253)
Q Consensus       165 ~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~~~p~~sa~~~~~~~~  244 (253)
                      .++++||+|+++|+||+|||+|||||||.++||+|||||+||+..+  +|.|.|||++||+++|+++|.|||+|+++.+.
T Consensus       236 ~~~~~eivV~l~G~~e~t~~t~~ar~sY~~~eI~wg~rF~~i~~~~--~~~~~vD~~~f~~~~~~~~p~~sa~~~~~~~~  313 (321)
T 2qks_A          236 QTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLE--EGFFKVDYSQFHATFEVPTPPYSVKEQEEMLL  313 (321)
T ss_dssp             TTCCCEEEEEEEEEETTTTEEEEEEEEEEGGGEEETEEECCCEEEC--SSSEEECGGGSSCEEECCCCSSCHHHHHCC--
T ss_pred             hcCCeEEEEEEEEEehhcCcEEEEEEEEChHHeecCCEeceeeEEc--CCcEEEehHHhCCceecCCCCcCHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999843  44499999999999999999999999999887


Q ss_pred             hcCC
Q psy4727         245 IHGT  248 (253)
Q Consensus       245 ~~~~  248 (253)
                      ++.+
T Consensus       314 ~~~~  317 (321)
T 2qks_A          314 MSSP  317 (321)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            6654

>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus}

Probab=100.00  E-value=1.2e-68  Score=465.74  Aligned_cols=189  Identities=52%  Similarity=0.848  Sum_probs=182.6

Q ss_pred             HHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCC
Q psy4727          55 IVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGI  134 (253)
Q Consensus        55 lvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~  134 (253)
                      ++|||||||++|++||+||++|||+++||++||||||||+|+++|+||+||++|++.+.|+|||.+++++.+|++++|.+
T Consensus        15 ~vfakisrP~kRa~tI~FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~r~~~t~EGe~~~~~~~~L~l~~d~~   94 (208)
T 2gix_A           15 CNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLQKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSG   94 (208)
T ss_dssp             BCEEEECCCCSCSCSEEECSCEEEEEETTEEEEEEEEEECCSSCEEEEEEEEEEEEEEECTTCCEEEEEEEEECSSGGGT
T ss_pred             EEEEEecCCcccCCcEEecCeEEEEEeCCEEEEEEEEecCccCeEEeeEEEEEEEEEEeCCCCcEEEEEEEEEEeccCCC
Confidence            36899999999999999999999999999999999999999999999999999999999999999988999999999887


Q ss_pred             CceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCC
Q psy4727         135 EDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETG  214 (253)
Q Consensus       135 ~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g  214 (253)
                      .+++||.+||||+|+|||+||||++++++|.++++||+|+++|+||+|||++|||+||.++||+|||||+||+.  .++|
T Consensus        95 ~~~~fl~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EivV~l~G~dest~qt~qaR~SY~~~eIlWg~rF~~iv~--~~~g  172 (208)
T 2gix_A           95 IDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTKQCRSSYLANEILWGHRYEPVLF--EEKH  172 (208)
T ss_dssp             TTEECCSSCEEEEEECCTTSTTTTCCHHHHHTCCCEEEEEEEEEETTTCCEEEEEEEEEGGGEEETEEECCCEE--ECSS
T ss_pred             CCceEEeccEEEEEECCCCCCccccChhHHhcCCEEEEEEEEEEecccCcEEEEEEEEchHHEEeCCEeceeEE--cCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999997  3689


Q ss_pred             eEEEecCCCCceeeec-CCCCChHhHHHHHhh
Q psy4727         215 EHEVNYGLFNNTYEVH-TPLCSAQALDQLLAI  245 (253)
Q Consensus       215 ~~~iD~~~F~~~~~~~-~p~~sa~~~~~~~~~  245 (253)
                      +|.|||++||+++|++ +|.|||+||++.+.+
T Consensus       173 ~~~VD~s~F~~~~~v~~tp~csa~~l~~~~~~  204 (208)
T 2gix_A          173 YYKVDYSRFHKTYEVPNTPLCSARDLAEKKYI  204 (208)
T ss_dssp             SEEEEGGGTTCEEECTTSCCSCHHHHHHHHHH
T ss_pred             eEEEEhHHcCcceEcCCCCCCCHHHHhhcccc
Confidence            9999999999999996 999999999998765

>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus}

Probab=100.00  E-value=9.1e-67  Score=467.49  Aligned_cols=189  Identities=53%  Similarity=0.858  Sum_probs=181.5

Q ss_pred             HHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCC
Q psy4727          55 IVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGI  134 (253)
Q Consensus        55 lvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~  134 (253)
                      ++|||||||++|+++|+||++|||+++||++||||||+|+|+++|+||+||++|++.++|+|||.+++++.+|++++|.+
T Consensus        20 ~vFaKiSrPkkRa~tI~FS~~AVI~~rdG~~~LMfRVaN~R~s~Iiea~Vrl~Lir~~~T~EGe~~~~~~~dL~l~~d~~   99 (270)
T 1u4f_A           20 CNVQFINVGEKRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVGFDSG   99 (270)
T ss_dssp             BCEEEESCCCTTTCSEEECSSEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEEEEEECTTCCEEEEEEEECCSSTTTT
T ss_pred             EEEEEccCCcCCCceEEecCcEEEEEeCCEEEEEEEEecCCCCeEEeeEEEEEEEEEEEcCCCcEEEeEEEEEEeccCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999988999999999888


Q ss_pred             CceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCC
Q psy4727         135 EDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETG  214 (253)
Q Consensus       135 ~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g  214 (253)
                      .+++||.+||||+|+|||+||||++++++|.+.++||+|+|+|+||+|||+||||+||.++||+|||||+||+.  .++|
T Consensus       100 ~~~~fL~~P~tV~H~IDe~SPLy~~t~e~L~~~d~EIvV~LeG~dEsTgqtvqARtSY~~~EIlWghRF~~iv~--~~~G  177 (270)
T 1u4f_A          100 IDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRYEPVLF--EEKH  177 (270)
T ss_dssp             TTEECCSSCEEEEEECCTTSTTTTCCHHHHHHCCCEEEEEEEEEETTCSCEEEEEEEEEGGGEEETEEECCCEE--ECSS
T ss_pred             CCceEEeccEEEEEECCCCCCccccChhhHhcCCeEEEEEEEEEecccCcEEEEEEEEchHHEEeCCEeceeEE--cCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999998  3689


Q ss_pred             eEEEecCCCCceeeec-CCCCChHhHHHHHhh
Q psy4727         215 EHEVNYGLFNNTYEVH-TPLCSAQALDQLLAI  245 (253)
Q Consensus       215 ~~~iD~~~F~~~~~~~-~p~~sa~~~~~~~~~  245 (253)
                      +|.|||++||+++|++ +|.|||++|++.+..
T Consensus       178 ~y~VD~s~Fh~t~pv~~tP~csa~~l~e~~~~  209 (270)
T 1u4f_A          178 YYKVDYSRFHKTYEVPNTPLCSARDLAEKKYI  209 (270)
T ss_dssp             SEEEEGGGSSCEEECTTSCCSCHHHHHHHC--
T ss_pred             eEEEEhHHcCcceecCCCCCCCHHHHhhhhcc
Confidence            9999999999999996 999999999997765

>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A

Probab=100.00  E-value=3.3e-66  Score=449.97  Aligned_cols=192  Identities=45%  Similarity=0.779  Sum_probs=176.9

Q ss_pred             HHHHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecC
Q psy4727          53 VGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGD  132 (253)
Q Consensus        53 ~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d  132 (253)
                      .|++|+||+||+++  ||+||++|||+++||++||||||||+|+++|+||+||++|++.++|+|||.+++++.+|++.+|
T Consensus        15 ~~v~~~rfsk~Ra~--tI~FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~r~~~t~EGe~~~~~~~~L~l~~d   92 (207)
T 1n9p_A           15 CNVQHGNLGSERAE--TLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFS   92 (207)
T ss_dssp             BCEEC-----CCSC--CSSBCSCEEEEEETTEEEEEEEECCCSSSCEEEEEEEEEEEEEEECTTSCEEEEEEEECCSSTT
T ss_pred             eeeEEeeecCCccc--eEEEeCcEEEEEECCEEEEEEEEecCCCCeEEccEEEEEEEEEEEcCCCcEEEEEEEeeEeecc
Confidence            47889999997754  7999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecC
Q psy4727         133 GIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKE  212 (253)
Q Consensus       133 ~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~  212 (253)
                      .+.+.++|.+||||+|+|||+||||++++++|.++++||+|+++|+||+|||+|||||||.++||+|||||+||+..+  
T Consensus        93 ~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EivV~l~G~de~t~~t~qaR~SY~~~eIlWg~rF~~iv~~~--  170 (207)
T 1n9p_A           93 TGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLE--  170 (207)
T ss_dssp             TTTTEEECSSCEEEEEECCTTSTTTTCCTTGGGTCCCEEEEEEEEEETTTCCBCCEEEEEEGGGEEETEEECCCEEES--
T ss_pred             CCCCceEEEccEEEEEeCCCCCCccccCHhHHhcCCeEEEEEEEEEehhhCcEEEEEEEEChHHeeeCCEeeeeEEEc--
Confidence            888899999999999999999999999999999999999999999999999999999999999999999999999843  


Q ss_pred             CCeEEEecCCCCceeeecCCCCChHhHHHHHhhcCC
Q psy4727         213 TGEHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHGT  248 (253)
Q Consensus       213 ~g~~~iD~~~F~~~~~~~~p~~sa~~~~~~~~~~~~  248 (253)
                      +|.|.|||++||+++|+++|.|||+||++...++.|
T Consensus       171 ~~~~~VD~s~F~~~~~v~~p~~sa~~l~e~~~~~~~  206 (207)
T 1n9p_A          171 EGFFKVDYSQFHATFEVPTPPYSVKEQEEMLLMSSP  206 (207)
T ss_dssp             SSCEEECGGGSSCEEECCCCCSCHHHHHHHHHHHCC
T ss_pred             CCeEEEEHHHhCCceEcCCCccCHHHHhhhhccCCC
Confidence            455999999999999999999999999998887654

>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A

Probab=100.00  E-value=1.6e-65  Score=446.02  Aligned_cols=185  Identities=50%  Similarity=0.823  Sum_probs=174.0

Q ss_pred             HhcCCcCCcceEEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCcee
Q psy4727          59 KLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKI  138 (253)
Q Consensus        59 KfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~  138 (253)
                      +.++|++||+||+||++|||+++||++||||||||+|+++|+||+||++|++.++|+|||.+++.+.+|+|..|.+.+++
T Consensus        21 ~~~~pk~Ra~tI~FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~~~~~t~EGe~~~~~~~dL~l~~d~~~~~~  100 (208)
T 3agw_A           21 HGNVREKRAETLVFSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRL  100 (208)
T ss_dssp             TTCCC---CCCCCBCSCEEEEEETTEEEEEEEECCCTTCCEEEEEEEEEEECCEECTTCCEETTCEEECCSSTTTTTTBC
T ss_pred             EeccCCcccccEEecceEEEEecCCeEEEEEEEecCccCeEEeeEEEEEEEEEEECCCCcEEEEEEEeeecccCCCCCce
Confidence            44667788889999999999999999999999999999999999999999999999999999888899999888888899


Q ss_pred             eeecceEEEEEcCCCCCCCCCCHhhhccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEE
Q psy4727         139 FFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEV  218 (253)
Q Consensus       139 ~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~i  218 (253)
                      ||.+||||+|+|||+||||++++++|.++++||+|+++|+||+|||++||||||.++||+|||||+||+..  ++|+|.|
T Consensus       101 fl~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EivV~l~G~dest~~t~qaR~SY~~~eIlWg~rF~~iv~~--~~G~~~V  178 (208)
T 3agw_A          101 FLVSPLIISHEINQQSPFWEISKAQLPKEELEIVVILEGMVEATGMTCQARSSYITSEILWGYRFTPVLTL--EDGFYEV  178 (208)
T ss_dssp             CCSSCEEEEEECCTTSTTTTCCTTTGGGCCCEEEEEEEEEETTTCSEEEEEEEEEGGGEEETEEECCCEEE--ETTEEEE
T ss_pred             EEeccEEEEEECCCCCCccccCHhHHhcCCeEEEEEEEEEehhhCcEEEEEEEEChHHEEeCCEeeeeEEe--cCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999984  6999999


Q ss_pred             ecCCCCceeeecCCCCChHhHHHHHhh
Q psy4727         219 NYGLFNNTYEVHTPLCSAQALDQLLAI  245 (253)
Q Consensus       219 D~~~F~~~~~~~~p~~sa~~~~~~~~~  245 (253)
                      ||++||+++|+++|.|||+||++...-
T Consensus       179 D~s~F~~~~pv~~p~~sa~~l~~~~~~  205 (208)
T 3agw_A          179 DYNSFHETYETSTPSLSAKELAELANR  205 (208)
T ss_dssp             CGGGTTCEEECCCCCSCHHHHHHHHTC
T ss_pred             EhHHcCcceecCCCcCCHHHHHHHHhh
Confidence            999999999999999999999998653

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=100.00  E-value=8.3e-62  Score=443.99  Aligned_cols=209  Identities=26%  Similarity=0.450  Sum_probs=199.2

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEE
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRV   91 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv   91 (253)
                      .| .|+||||||.++|  .|+.|.+++++|+++|+++.|+++|++++||+||++|   +.||++|||+++||++|||||+
T Consensus        89 fs~vT~tTvGYGDi~P--~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~~r---~~fs~~~vI~~~~g~~~l~~R~  163 (301)
T 1xl4_A           89 FSVQTMATIGYGKLIP--IGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAG---VLFSSRMVISDFEGKPTLMMRL  163 (301)
T ss_dssp             HHHHHHTTCCCSSSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC---EEECSCEEEEEETTEEEEEEEE
T ss_pred             HhhhheeccCCCCCcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh---hccCCeEEEecCCCcceeeeec
Confidence            67 9999999999988  4899999999999999999999999999999999998   9999999999999999999999


Q ss_pred             eeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEE
Q psy4727          92 GDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEI  171 (253)
Q Consensus        92 ~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~Ei  171 (253)
                      +|.|+++++||+||+++++.++++|||.+ ..+.+|+++++   +.++|.+||+|+|+|||+||||++++++|.++++||
T Consensus       164 ~n~r~~~li~a~vr~~l~~~~~t~eGe~~-~~~~~L~l~~~---~~~~l~~p~~v~H~Id~~SPL~~~s~~~L~~~~~ei  239 (301)
T 1xl4_A          164 ANLRIEQIIEADVHLVLVRSEISQEGMVF-RRFHDLTLTRS---RSPIFSLSWTVMHPIDHHSPIYGETDETLRNSHSEF  239 (301)
T ss_dssp             EECSSSCEEEEEEEEEEEEEEECTTSCEE-EEEEECCCSCC---EEEEECSEEEEEEECCTTCTTTTCCHHHHHHHTCEE
T ss_pred             cccccceEEccEEEEEEEEeeEcCCCcEE-EEEeccccccC---CeEEEEeeEEEEEecCCCCCcccCCHhHHhcCCeEE
Confidence            99999999999999999999999999998 56889999753   578999999999999999999999999999999999


Q ss_pred             EEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeeecC
Q psy4727         172 VVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHT  231 (253)
Q Consensus       172 iV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~~~  231 (253)
                      +|+++|+||+|||++|||+||.++||+|||||+||+.. .++|+|.|||++||+++|-+.
T Consensus       240 vV~l~G~de~t~~~~~ar~sY~~~eI~wg~rF~~~~~~-~~~g~~~vD~~~f~~~~~~~~  298 (301)
T 1xl4_A          240 LVLFTGHHEAFAQNVHARHAYSCDEIIWGGHFVDVFTT-LPDGRRALDLGKFHEIAQHHH  298 (301)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEGGGEEETCEECCCEEE-CTTSCEEECTTSTTCEECCCC
T ss_pred             EEEEEEEecccCcEEEEEEeecHHHeeeCCEecceeeE-CCCCcEEEEhHHhcCcccccc
Confidence            99999999999999999999999999999999999984 468999999999999999753

>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus}

Probab=100.00  E-value=3.8e-62  Score=444.07  Aligned_cols=190  Identities=53%  Similarity=0.872  Sum_probs=179.4

Q ss_pred             HHHHHHhcC---CcCCcceEEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeee
Q psy4727          54 GIVFAKLSR---PKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVG  130 (253)
Q Consensus        54 GlvfaKfSr---P~~r~~tI~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~  130 (253)
                      ++.|+++++   +++||+||+||++|||+++||++||||||+|+|+++|+||+||++|++.++|+|||.+++++.+|++.
T Consensus        55 nV~f~~~~~k~qrr~RA~TI~FS~~AVI~~rDG~~cLMFRVaN~R~s~Iiea~Vr~~Lir~~~T~EGe~i~~~~~dL~l~  134 (309)
T 2xky_I           55 NVQFINVGEKGQRGGRNETLVFSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIPLDQIDINVG  134 (309)
T ss_pred             eeEEeecCcccccCCCcceEEEeccEEEEEECCEEEEEEEEecCcCCeEEccEEEEEEEEEEEcCCCcEEEeeeeeeecc
Confidence            345666555   37889999999999999999999999999999999999999999999999999999999899999999


Q ss_pred             cCCCCceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeee
Q psy4727         131 GDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFK  210 (253)
Q Consensus       131 ~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~  210 (253)
                      +|.+.+++||.+||||+|+|||+||||++++++|.+.++||+|+|+|+||+|||++|||+||.++||+|||||+||+.  
T Consensus       135 ~d~~~~~~fL~~P~tV~H~IDe~SPLy~~t~e~L~~~dfEIVV~LeG~dEsTgqtvqARtSY~~~EIlWGhRF~piv~--  212 (309)
T 2xky_I          135 FDSGIDRIFLVSPITIVHEIDEDSPLYDLSKQDIDNADFEIVVILEGMVEATAMTTQCRSSYLANEILWGHRYEPVLF--  212 (309)
T ss_pred             cCCCCcceeEeccEEEEEECCCCCCccccChhhHhcCCeEEEEEEEEEecccCceEEEEEEEchHHeeeCCEeceeEE--
Confidence            887778999999999999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             cCCCeEEEecCCCCceeeec-CCCCChHhHHHHHhh
Q psy4727         211 KETGEHEVNYGLFNNTYEVH-TPLCSAQALDQLLAI  245 (253)
Q Consensus       211 ~~~g~~~iD~~~F~~~~~~~-~p~~sa~~~~~~~~~  245 (253)
                      .++|+|.|||++||+++|++ +|.|||++|++.+.+
T Consensus       213 ~~~G~y~VD~s~Fh~t~pv~~tP~cSa~~l~e~~~~  248 (309)
T 2xky_I          213 EEKHYYKVDYSRFHKTYEVPNTPLCSARDLAEKKYI  248 (309)
T ss_pred             cCCCeEEEEhHHcCcceecCCCCCCCHHHHhhhhcc
Confidence            36899999999999999998 999999999998764

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=100.00  E-value=1.2e-61  Score=448.31  Aligned_cols=215  Identities=28%  Similarity=0.465  Sum_probs=184.4

Q ss_pred             Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcceEEeccceEEeeeCCE
Q psy4727           9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKRTQTLLFSRNAVICQRDGE   84 (253)
Q Consensus         9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r~~tI~FS~~AVI~~~dG~   84 (253)
                      +..|   .| +|+||||||.++|.  |+.|.+++++|+++|+++.|+++|+++++|++|++|   +.||++||||++||+
T Consensus        96 s~~~a~yfs~vT~tTVGYGDi~P~--t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~r---~~fs~~~VI~~~~g~  170 (333)
T 1p7b_A           96 GFVGAFFFSVETLATVGYGDMHPQ--TVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK---IMFARHAIVRPFNGR  170 (333)
T ss_dssp             STHHHHHHHTTTTTTCCCSCCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC---CEECSCEEEEECSSS
T ss_pred             cHHHhHhhhheeeeecCCCCCcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCEEEcCCCCc
Confidence            4455   67 99999999999885  789999999999999999999999999999999999   999999999999999


Q ss_pred             EEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEEcCCCCCCCCCCHhhh
Q psy4727          85 LCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADM  164 (253)
Q Consensus        85 ~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L  164 (253)
                      +|||||++|+|++++++++||+++++.++++|||.++. ..+|++.++   +.++|.+||||+|+|||+||||++++++|
T Consensus       171 ~~L~fRv~n~r~~~li~a~vr~~li~~~~t~eGe~~~~-~~~l~l~~~---~~~~l~~~~tv~H~Id~~SPL~~~s~~~L  246 (333)
T 1p7b_A          171 MTLMVRAANARQNVIAEARAKMRLMRREHSSEGYSLMK-IHDLKLVRN---EHPIFLLGWNMMHVIDESSPLFGETPESL  246 (333)
T ss_dssp             EEEEEEEECCSSCCCCEEEEEEECC----------CCE-ECCSGGGTT---CSCCCCSSEEEEEECSTTSTTSSCCHHHH
T ss_pred             ceEEEEecccccceEEeeEEEEEEEeeeecCCCcEEee-eeecccccC---CCeeEeeeEEEEEeCCCCCCccccCHhHH
Confidence            99999999999999999999999999999999999865 578888754   46789999999999999999999999999


Q ss_pred             ccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeeecCCCC
Q psy4727         165 LRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLC  234 (253)
Q Consensus       165 ~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~~~p~~  234 (253)
                      .++++||+|+++|+||+|||++|||+||.++||+|||||+||+..  ++|+|.|||++||+++|+++|.+
T Consensus       247 ~~~~~eivV~l~G~de~t~~t~qar~sY~~~eI~wg~rF~~i~~~--~~g~~~vD~~~f~~~~~~~~~~~  314 (333)
T 1p7b_A          247 AEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWHHRYVDLMSD--VDGMTHIDYTRFNDTEPVEPPGA  314 (333)
T ss_dssp             HHTTCEEEEEEEEEETTTTEEEEEEEEEEGGGEEETCCBCCCC--------CCCCCTTSSCBCCC-----
T ss_pred             hcCCEEEEEEEEEEecccCceEEEEEEechHHeeeCCEechheEe--CCCcEEEEhHHcCCceecCCccc
Confidence            999999999999999999999999999999999999999999983  48999999999999999999988

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=98.04  E-value=1.7e-06  Score=66.25  Aligned_cols=56  Identities=16%  Similarity=0.159  Sum_probs=48.8

Q ss_pred             Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727           9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR   66 (253)
Q Consensus         9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r   66 (253)
                      +..|   .| .|.+|||||...|.  ++.+-+++.+++++|+++.++.+|.+.+.+.+..+|
T Consensus        40 ~~~~a~y~~~~T~tTvGyGDi~P~--t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~   99 (103)
T 2k1e_A           40 SYPDAIWWSVETATTVGYGDRYPV--TEEGRKVAEQVMKAGIEVFALVTAALATDFVRREEE   99 (103)
T ss_dssp             CGGGTTTTTTGGGGCCSCCSSCCC--SSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456   56 99999999999986  457899999999999999999999999999876654

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=97.84  E-value=1.4e-05  Score=65.83  Aligned_cols=52  Identities=10%  Similarity=0.083  Sum_probs=47.0

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR   66 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r   66 (253)
                      .| .|.||||||...|.  .+.+-+++.+++++|+.+.++.+|.+.+.+++..++
T Consensus        91 ~s~vTltTVGYGDi~P~--t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~  143 (155)
T 2a9h_A           91 WSVETATTVGYGDLYPV--TLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQE  143 (155)
T ss_dssp             HHHHHHTTCCCSSSCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-
T ss_pred             eeeeeeecccCCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56 89999999999987  468999999999999999999999999999988765

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=97.64  E-value=1.6e-05  Score=62.65  Aligned_cols=52  Identities=6%  Similarity=0.084  Sum_probs=46.2

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR   66 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r   66 (253)
                      .| .|.||||||...|.+  +.+-+++.+.+++|+.+.++.+|.+.+.+++..++
T Consensus        68 ~~~~T~tTvGyGDi~P~t--~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~  120 (122)
T 2ih3_C           68 WACETATTVAYGDLYPVT--LWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE  120 (122)
T ss_dssp             HHHHHHTTCCCSSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             heeeeeeeeecCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56 899999999999874  68899999999999999999999999998876543

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=97.54  E-value=3.5e-05  Score=61.64  Aligned_cols=51  Identities=8%  Similarity=0.086  Sum_probs=44.8

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKK   65 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~   65 (253)
                      .| .|.||||||..+|.+  +.+-+++.+.+++|+.+.++++|.+...+.+..+
T Consensus        47 f~~~T~tTvGyGd~~P~t--~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~   98 (139)
T 3eff_K           47 WSVETATTVGYGDLYPVT--LWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ   98 (139)
T ss_dssp             HHHHHHTTCCCSSSCCCS--SHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred             HHheeeecccCCCCcCCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55 999999999999975  4789999999999999999999999888866543

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=97.51  E-value=9.8e-06  Score=67.05  Aligned_cols=56  Identities=7%  Similarity=0.065  Sum_probs=48.1

Q ss_pred             Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727           9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR   66 (253)
Q Consensus         9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r   66 (253)
                      +.+|   .| .|.||||||..+|.+  +.+-+++.+.+++|+.+.++++|.+.+.+.+..++
T Consensus        67 ~~~~a~yf~~~T~tTvGyGDi~P~t--~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~  126 (166)
T 3pjs_K           67 TYPRALWWSVETATTVGYGDLYPVT--LWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQ  126 (166)
T ss_dssp             STTTTTTTTHHHHSCCCCSSSCCCS--STTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHH
T ss_pred             CHHHHHHHHHHHhccccCCCCCCCC--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456   66 999999999999975  47789999999999999999999999998876644

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=97.43  E-value=5.4e-05  Score=57.32  Aligned_cols=56  Identities=16%  Similarity=0.147  Sum_probs=47.6

Q ss_pred             CCccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Q psy4727           8 SSPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKK   65 (253)
Q Consensus         8 ~~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~   65 (253)
                      -+.+|   .+ .|.+|||||...|.+  +.+-+++.+.+++|+.+.+.++|.+-.++..++-
T Consensus        31 ~~~~~a~yf~~~T~tTvGyGdi~P~t--~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~   90 (97)
T 3ouf_A           31 LRPIDALYFSVVTLTTVGYGDFSPQT--DFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI   90 (97)
T ss_dssp             CCHHHHHHHHHHHHTTCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CCHHHHHHHHHHHHHccCCCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            34455   45 899999999999864  5889999999999999999999999999876653

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=97.42  E-value=0.0001  Score=59.09  Aligned_cols=52  Identities=10%  Similarity=0.157  Sum_probs=45.3

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR   66 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r   66 (253)
                      .+ .|.||||||..+|.  .+.+-+++.+.+++|+.+.++++|.+-..+..-..+
T Consensus        50 ~~~~T~tTvGyGDi~P~--t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~  102 (137)
T 4h33_A           50 WAIVTATTVGYGDIVPV--TPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPT  102 (137)
T ss_dssp             HHHHHHTTCCCSSSCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC
T ss_pred             HHHHHHHcccCCCCCCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56 89999999999987  468899999999999999999999998888654443

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=97.37  E-value=0.00016  Score=56.23  Aligned_cols=56  Identities=14%  Similarity=0.085  Sum_probs=46.1

Q ss_pred             CCccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Q psy4727           8 SSPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKK   65 (253)
Q Consensus         8 ~~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~   65 (253)
                      .+.+|   .+ .|.||||||...|.  .+.+-+++.+.+++|+.+.+..+|.+.++++..+.
T Consensus        48 ~~~~~a~y~~~~T~tTvGyGdi~P~--t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~  107 (114)
T 2q67_A           48 LRPIDALYFSVVTLTTVGAGNFSPQ--TDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI  107 (114)
T ss_dssp             CCHHHHHHHHHHHHTSCCCSSCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             CCHHHHHHHHHHHhcceeCCCCccC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455   55 89999999999986  46889999999999999999999999999866554

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=97.25  E-value=0.00026  Score=51.82  Aligned_cols=46  Identities=17%  Similarity=0.269  Sum_probs=40.5

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKL   60 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKf   60 (253)
                      .| .|.+|||||..+|.+  +.+-+++.+.+++|+.+.++.+|.+-..+
T Consensus        35 f~~~T~tTvGyGdi~P~t--~~~r~~~~~~~~~G~~~~~~~~~~i~~~l   81 (82)
T 3ldc_A           35 WTFVTIATVGYGDYSPHT--PLGMYFTCTLIVLGIGTFAVAVERLLEFL   81 (82)
T ss_dssp             HHHHHHTTCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45 899999999999874  68899999999999999999999887654

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=97.23  E-value=0.00017  Score=61.42  Aligned_cols=48  Identities=15%  Similarity=0.209  Sum_probs=43.7

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSR   62 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSr   62 (253)
                      .+ .|.||||||..+|.  .+.+-+++.+.+++|+.+.|+.+|.+.+.+++
T Consensus       172 ~~~~t~tTvGyGdi~P~--t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~  220 (223)
T 1orq_C          172 WAVVTATTVGYGDVVPA--TPIGKVIGIAVMLTGISALTLLIGTVSNMFQK  220 (223)
T ss_dssp             HHHHHHTTCCCCSSCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhHHhccCCCCCCCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45 89999999999886  57899999999999999999999999998875

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=96.72  E-value=0.001  Score=53.69  Aligned_cols=49  Identities=12%  Similarity=0.040  Sum_probs=41.4

Q ss_pred             CCccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4727           8 SSPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFA   58 (253)
Q Consensus         8 ~~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~Glvfa   58 (253)
                      -+.+|   .| .|.||||||..+|.+  +.+-+++.+.+++|+.+.+.++|.+..
T Consensus        51 ~~~~~a~y~~~~t~tTvGyGd~~p~t--~~~r~~~~~~~~~g~~~~~~~~~~~~~  103 (148)
T 3vou_A           51 LRPLDALYFSVVTLTTVGDGNFSPQT--DFGKVFTILYIFIGIGLVFGFIHKLAV  103 (148)
T ss_dssp             CCHHHHHHHHHHHHTTCCCSSCCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHccCCCCCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455   45 899999999999864  688999999999999999999887765

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=96.67  E-value=0.001  Score=60.23  Aligned_cols=52  Identities=13%  Similarity=0.141  Sum_probs=45.5

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR   66 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r   66 (253)
                      .+ .|.||||||..+|.  ++.+.+++.+.+++|+++.++.+|.+...+.+-.+|
T Consensus       168 ~~~~t~ttvGygd~~p~--t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~  220 (355)
T 3beh_A          168 WAVVTLSTTGYGDTIPQ--SFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR  220 (355)
T ss_dssp             HHHHHHTTCCCSSSCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhheeecCCCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45 89999999999886  578999999999999999999999999988765443

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.10  E-value=0.00059  Score=61.38  Aligned_cols=57  Identities=14%  Similarity=0.118  Sum_probs=45.3

Q ss_pred             CCCCccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy4727           6 PSSSPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPK   64 (253)
Q Consensus         6 ~~~~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~   64 (253)
                      ...|.+|   .+ .|.||||||..+|.+  +.+-+++.+.+++|+.+.++++|.+...+.+..
T Consensus        42 e~~~~~~a~y~~~~t~tTvGyGd~~p~t--~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  102 (336)
T 1lnq_A           42 EGESWTVSLYWTFVTIATVGYGDYSPST--PLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE  102 (336)
T ss_dssp             SSCCSSTTHHHHHHHHTTCCCSSCCCCC--SSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred             hCCCHHHHHHHHHHHhhcccCCCCCCCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566   55 899999999999874  578999999999999999999999998887764

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=96.09  E-value=0.0031  Score=57.35  Aligned_cols=48  Identities=15%  Similarity=0.202  Sum_probs=41.2

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSR   62 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSr   62 (253)
                      .+ +|.||||||..+|.+  +.|-+++++-+++|+.+.+++++.+-.++++
T Consensus       122 f~~~t~tTvGYGdi~P~T--~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~  170 (309)
T 3um7_A          122 FSGTIITTIGYGNVALRT--DAGRLFCIFYALVGIPLFGILLAGVGDRLGS  170 (309)
T ss_dssp             HHHHHHTSCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhheeeeecccCCCCCCC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45 899999999999975  5899999999999999999998876655543

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.88  E-value=0.0032  Score=60.61  Aligned_cols=45  Identities=9%  Similarity=0.188  Sum_probs=38.6

Q ss_pred             Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy4727           9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGI   55 (253)
Q Consensus         9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~Gl   55 (253)
                      |.+|   .+ .|.||||||...|.  .+.+-+++.+.+++|+.+.++++|.
T Consensus        51 ~~~~~~y~~~~t~tTvGygd~~p~--~~~~~~~~~~~~~~g~~~~~~~~~~   99 (565)
T 4gx0_A           51 SFMAGIYWTITVMTTLGFGDITFE--SDAGYLFASIVTVSGVIFLDIILPF   99 (565)
T ss_dssp             CHHHHHHHHHHHHTTCCCCSSCCC--SHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             chhhhhheeeeeeeeecCCCcCCC--CccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566   56 99999999999886  4688999999999999999988877

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=95.76  E-value=0.0043  Score=55.65  Aligned_cols=50  Identities=10%  Similarity=0.166  Sum_probs=43.5

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPK   64 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~   64 (253)
                      .+ .|.||||||..+|.+  +.|-+++.+-+++|+.+.+++++.+..++....
T Consensus       100 f~~~t~tTvGyGd~~P~T--~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~  150 (280)
T 3ukm_A          100 FASTVLSTTGYGHTVPLS--DGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHV  150 (280)
T ss_dssp             HHHHHHTTCCCCSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             heeeeeeccccCCcCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55 899999999999975  689999999999999999999998877776544

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=95.70  E-value=0.0044  Score=59.75  Aligned_cols=67  Identities=15%  Similarity=0.085  Sum_probs=42.9

Q ss_pred             cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC---cceEEeccceEEeeeCC
Q psy4727          15 NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR---TQTLLFSRNAVICQRDG   83 (253)
Q Consensus        15 ~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r---~~tI~FS~~AVI~~~dG   83 (253)
                      .|.||||||...|.  .+.|.+++++-+++|+++.++.+|++...|++-.++   .+.-...++.++|.++.
T Consensus       385 vT~TTvGYGDi~P~--t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~~~~~~l~~h~iicg~~~  454 (514)
T 2r9r_B          385 VSMTTVGYGDMVPT--TIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIP  454 (514)
T ss_dssp             HHHTTCCCSSSCCC--SHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC------------------
T ss_pred             eEEEecccCCCCCC--CcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEeCCCc
Confidence            89999999999886  467889999999999999999999998877754322   11234556666665543

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=93.43  E-value=0.05  Score=49.34  Aligned_cols=54  Identities=11%  Similarity=0.078  Sum_probs=41.2

Q ss_pred             cc-cceeeeecCcCccCCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727          13 MS-NNSILNSYGAKQVTEEC----PEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR   66 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c----~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r   66 (253)
                      .+ .|.||||||...|.++-    |...+++.+-+++|+.+.+++++.+-..+..-.+|
T Consensus       231 ~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r  289 (309)
T 3um7_A          231 FVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRR  289 (309)
T ss_dssp             HHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred             HHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45 89999999999987541    22236889999999999999999876655544444

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=92.73  E-value=0.091  Score=46.96  Aligned_cols=44  Identities=7%  Similarity=-0.039  Sum_probs=36.2

Q ss_pred             cc-cceeeeecCcCccCCCCh-----hHHHHHHHHHHHHHHHHHHHHHHH
Q psy4727          13 MS-NNSILNSYGAKQVTEECP-----EAIFILCLQSIVGVMIQAFMVGIV   56 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~-----~~~~l~~~q~~~G~l~~a~~~Glv   56 (253)
                      .+ .|.||||||...|.++..     .+-+++.+-+++|+.+.+.+++.+
T Consensus       208 ~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i  257 (280)
T 3ukm_A          208 FCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETF  257 (280)
T ss_dssp             HHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             heeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55 899999999999987531     457889999999999998888764

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=80.49  E-value=0.58  Score=40.70  Aligned_cols=52  Identities=15%  Similarity=0.245  Sum_probs=37.6

Q ss_pred             cceeeeecC-cC-ccCCC-Chh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCC
Q psy4727          15 NNSILNSYG-AK-QVTEE-CPE-AIFILCLQSIVGVMIQAFMVGIVFAKLSRPKKR   66 (253)
Q Consensus        15 ~t~tTIGYG-~~-~p~~~-c~~-~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~~r   66 (253)
                      +|.||+||| .. +|... .|+ +.+++++-++.|+++.++.+|++...|++..+.
T Consensus       190 ~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~  245 (285)
T 3rvy_A          190 QVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK  245 (285)
T ss_dssp             HHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999 65 35432 233 368889999999999999999999999887665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d1n9pa_	202	b.1.18.16 (A:) G protein-gated inward rectifier Gi	3e-86
d1xl4a1	161	b.1.18.16 (A:139-299) Inward rectifier potassium c	3e-69
d1p7ba1	158	b.1.18.16 (A:152-309) Inward rectifier potassium c	9e-68
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	7e-05
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	2e-04

>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 202

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: G protein-gated inward rectifier Girk1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  253 bits (647), Expect = 3e-86
 Identities = 87/191 (45%), Positives = 127/191 (66%), Gaps = 4/191 (2%)

Query: 55  IVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVT 114
           +    L    +R +TL+FS +AVI  RDG+L LMFRVG++R SH++ A +R +L++ + T
Sbjct: 13  VQHGNLG--SERAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQT 70

Query: 115 LEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVI 174
            EGE LP  Q EL VG     D++F + P TI H I+  SP Y LS   M  E+FE+VVI
Sbjct: 71  PEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVI 130

Query: 175 LEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHTPLC 234
           LEG++E+TGMT QAR+SY  +E+LWGHRF  ++S ++  G  +V+Y  F+ T+EV TP  
Sbjct: 131 LEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISLEE--GFFKVDYSQFHATFEVPTPPY 188

Query: 235 SAQALDQLLAI 245
           S +  +++L +
Sbjct: 189 SVKEQEEMLLM 199

>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 161

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score =  208 bits (530), Expect = 3e-69
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 5/165 (3%)

Query: 67  TQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQE 126
           T  +LFS   VI   +G+  LM R+ ++R   IIEA V   L+R +++ EG +   +   
Sbjct: 1   TAGVLFSSRMVISDFEGKPTLMMRLANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDL 60

Query: 127 LKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTT 186
                        F    T++H I+  SP+Y  +   +     E +V+  G  E+     
Sbjct: 61  TLTRSRSP----IFSLSWTVMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNV 116

Query: 187 QARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEVHT 231
            AR +Y  +EI+WG  F  + +   + G   ++ G F+   + H 
Sbjct: 117 HARHAYSCDEIIWGGHFVDVFTTLPD-GRRALDLGKFHEIAQHHH 160

>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 158

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score =  204 bits (521), Expect = 9e-68
 Identities = 45/163 (27%), Positives = 86/163 (52%), Gaps = 6/163 (3%)

Query: 67  TQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQE 126
              ++F+R+A++   +G + LM R  + R++ I EA  + +L+R++ + EG  L      
Sbjct: 2   RAKIMFARHAIVRPFNGRMTLMVRAANARQNVIAEARAKMRLMRREHSSEGYSLMKIHD- 60

Query: 127 LKVGGDGIEDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTT 186
           LK+  +   +   F+    ++H I+  SPL+  +   +   R  ++V++EG  E+T    
Sbjct: 61  LKLVRN---EHPIFLLGWNMMHVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVM 117

Query: 187 QARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEV 229
           QAR ++  ++I W HR+  L+S     G   ++Y  FN+T  V
Sbjct: 118 QARHAWEHDDIRWHHRYVDLMS--DVDGMTHIDYTRFNDTEPV 158

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 39.2 bits (91), Expect = 7e-05
 Identities = 9/41 (21%), Positives = 23/41 (56%)

Query: 23  GAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRP 63
           G  ++    P A  ++ L+++ G++  A    +++A+ +RP
Sbjct: 76  GYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 116

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 23  GAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSR 62
           G   +  +   A  I  L+  VG+   A   G+VFA+ +R
Sbjct: 77  GYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1n9pa_	202	G protein-gated inward rectifier Girk1 {Mouse (Mus	100.0
d1xl4a1	161	Inward rectifier potassium channel kirbac3.1 {Magn	100.0
d1p7ba1	158	Inward rectifier potassium channel Kirbac1.1 {Burk	100.0
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.11
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.05
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	97.65
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	95.86

>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: G protein-gated inward rectifier Girk1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-64  Score=433.48  Aligned_cols=189  Identities=46%  Similarity=0.797  Sum_probs=174.1

Q ss_pred             HHHHHhcCCcCCcceEEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCC
Q psy4727          55 IVFAKLSRPKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGI  134 (253)
Q Consensus        55 lvfaKfSrP~~r~~tI~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~  134 (253)
                      +.||||||+++  +||+||++|||+++||+|||||||||+|+|+|+||+||++|++.+.++|||.+++++.+|++..+.+
T Consensus        13 ~~~~r~~~kRa--~tI~FS~~AVI~~~dG~~~LmfRvan~R~~~liea~vr~~L~~~~~t~EGe~~~~~~~~l~l~~~~~   90 (202)
T d1n9pa_          13 VQHGNLGSERA--ETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTG   90 (202)
T ss_dssp             EEC-----CCS--CCSSBCSCEEEEEETTEEEEEEEECCCSSSCEEEEEEEEEEEEEEECTTSCEEEEEEEECCSSTTTT
T ss_pred             EEEeecCCCCc--ceEEEcccEEEEEECCEEEEEEEEecCcCCeEEeEEEEEEEEEeeecCCCceEEEEEEEeeccccCC
Confidence            46889988664  5899999999999999999999999999999999999999999999999999999999999987777


Q ss_pred             CceeeeecceEEEEEcCCCCCCCCCCHhhhccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCC
Q psy4727         135 EDKIFFIWPTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETG  214 (253)
Q Consensus       135 ~~~~~l~~p~tv~H~IDe~SPL~~~t~~~L~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g  214 (253)
                      .+++||.+||||+|+|||+||||++++++|+++++||+|+|+|+||+|||++||||||.++||+|||||+||++.  ++|
T Consensus        91 ~~~~fl~~p~tv~H~IDe~SPLy~~t~~~L~~~~~ElvV~l~G~de~t~~~v~aR~sY~~~eI~wg~rF~div~~--~~g  168 (202)
T d1n9pa_          91 ADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGIVETTGMTCQARTSYTEDEVLWGHRFFPVISL--EEG  168 (202)
T ss_dssp             TTEEECSSCEEEEEECCTTSTTTTCCTTGGGTCCCEEEEEEEEEETTTCCBCCEEEEEEGGGEEETEEECCCEEE--SSS
T ss_pred             CCccEEcccEEEEEECCCCCCCcccchhhhhcCCeEEEEEEEEEecccCcEEEEEEEEchHHEeeCCEEeeeEEe--cCC
Confidence            888999999999999999999999999999999999999999999999999999999999999999999999983  579


Q ss_pred             eEEEecCCCCceeeecCCCCChHhHHHHHhhcC
Q psy4727         215 EHEVNYGLFNNTYEVHTPLCSAQALDQLLAIHG  247 (253)
Q Consensus       215 ~~~iD~~~F~~~~~~~~p~~sa~~~~~~~~~~~  247 (253)
                      +|.|||++||+++|+++|.|||+|++|...++.
T Consensus       169 ~~~VD~s~F~~t~pv~~P~~sa~~~~~~~~~~~  201 (202)
T d1n9pa_         169 FFKVDYSQFHATFEVPTPPYSVKEQEEMLLMSS  201 (202)
T ss_dssp             CEEECGGGSSCEEECCCCCSCHHHHHHHHHHHC
T ss_pred             EEEEEHHHCCcceECCCCCcCHHHHHHHhhccC
Confidence            999999999999999999999999999876654

>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=100.00  E-value=7.8e-56  Score=369.55  Aligned_cols=157  Identities=27%  Similarity=0.480  Sum_probs=148.1

Q ss_pred             EEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeecceEEEEE
Q psy4727          70 LLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIWPTTIVHK  149 (253)
Q Consensus        70 I~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~p~tv~H~  149 (253)
                      |+||++|||+++||+|||||||||+|+|+|+||+||++|++.+.++||+.++. ..+|++++   .+.++|.+||||+|+
T Consensus         4 I~FS~~Avi~~~dG~~~LmfRv~n~R~~~liea~vr~~l~~~~~t~eG~~~~~-~~~L~l~~---~~~~~~~~~~tv~H~   79 (161)
T d1xl4a1           4 VLFSSRMVISDFEGKPTLMMRLANLRIEQIIEADVHLVLVRSEISQEGMVFRR-FHDLTLTR---SRSPIFSLSWTVMHP   79 (161)
T ss_dssp             EEECSCEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEEEEEECTTSCEEEE-EEECCCSC---CEEEEECSEEEEEEE
T ss_pred             EEeeCcEEEEEECCEEEEEEEEecCCCCeEEeeEEEEEEEEEEecCCCeEEEE-EEeecccc---CCccEEEEEEEEEEe
Confidence            99999999999999999999999999999999999999999999999998864 56888874   356799999999999


Q ss_pred             cCCCCCCCCCCHhhhccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCCCCceeee
Q psy4727         150 INPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGLFNNTYEV  229 (253)
Q Consensus       150 IDe~SPL~~~t~~~L~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~F~~~~~~  229 (253)
                      |||+||||++++++|+++++||+|+++|+||+|||++|||+||.++||+|||||+||++.+ ++|++.|||++||+++|.
T Consensus        80 ID~~SPL~~~~~~~l~~~~~ElvV~l~G~de~t~~~v~ar~sY~~~eI~wg~~F~~~v~~~-~dg~~~vD~~~F~~~~p~  158 (161)
T d1xl4a1          80 IDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHARHAYSCDEIIWGGHFVDVFTTL-PDGRRALDLGKFHEIAQH  158 (161)
T ss_dssp             CCTTCTTTTCCHHHHHHHTCEEEEEEEEEETTTTEEEEEEEEEEGGGEEETCEECCCEEEC-TTSCEEECTTSTTCEECC
T ss_pred             cCCCCCCCCCCHHHHhcCCeEEEEEEEEEecccCCEEEEEEEEchHHEEeCCEEeeeEEEC-CCCCEEEEHHHccCccCC
Confidence            9999999999999999999999999999999999999999999999999999999999854 689999999999999997


Q ss_pred             cC
Q psy4727         230 HT  231 (253)
Q Consensus       230 ~~  231 (253)
                      ..
T Consensus       159 ~~  160 (161)
T d1xl4a1         159 HH  160 (161)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=100.00  E-value=7e-57  Score=374.82  Aligned_cols=158  Identities=29%  Similarity=0.529  Sum_probs=135.3

Q ss_pred             CcCCcceEEeccceEEeeeCCEEEEEEEEeeCCcCeEEEEEEEEEEEEEeeeCCCeEEeeEEeeeeeecCCCCceeeeec
Q psy4727          63 PKKRTQTLLFSRNAVICQRDGELCLMFRVGDMRRSHIIEAHVRAQLIRKKVTLEGELLPFYQQELKVGGDGIEDKIFFIW  142 (253)
Q Consensus        63 P~~r~~tI~FS~~AVI~~~dG~~~LmfRv~N~r~~~liea~vr~~l~~~~~t~eGe~~~~~~~~l~l~~d~~~~~~~l~~  142 (253)
                      |++|   |+||++|||+++||++||||||||+|+|+|+||+||+++++.+.++||+.++ ...+|++.++   +.++|.+
T Consensus         1 P~a~---I~FS~~Avi~~~dG~~~LmfRv~n~R~~~lie~~vr~~l~~~~~t~eG~~~~-~~~~l~l~~~---~~~~l~~   73 (158)
T d1p7ba1           1 PRAK---IMFARHAIVRPFNGRMTLMVRAANARQNVIAEARAKMRLMRREHSSEGYSLM-KIHDLKLVRN---EHPIFLL   73 (158)
T ss_dssp             CCCC---CEECSCEEEEECSSSEEEEEEEECCSSCCCCEEEEEEECC----------CC-EECCSGGGTT---CSCCCCS
T ss_pred             CCcc---EEEeCcEEEEEECCEEEEEEEEecCcCCeEEeeEEEEEEEEeeecCCCeEEe-eeEecccCCC---CcceEee
Confidence            7777   9999999999999999999999999999999999999999999999999874 4678888754   5689999


Q ss_pred             ceEEEEEcCCCCCCCCCCHhhhccCCeEEEEEEEEEeccccceEEEEEeeeCCceecCCeeeeeeeeecCCCeEEEecCC
Q psy4727         143 PTTIVHKINPMSPLYTLSAADMLRERFEIVVILEGVIESTGMTTQARSSYLPNEILWGHRFETLVSFKKETGEHEVNYGL  222 (253)
Q Consensus       143 p~tv~H~IDe~SPL~~~t~~~L~~~~~EiiV~l~G~de~t~~tv~aR~SY~~~eI~wg~rF~~~v~~~~~~g~~~iD~~~  222 (253)
                      ||||+|+|||+||||++++++|+++++||+|+++|+||+|||++||||||.++||+|||||+||++  .++|++.|||++
T Consensus        74 p~tv~H~Id~~SPL~~~~~~~L~~~~~elvV~l~G~de~t~~~v~ar~sY~~~eI~wg~rF~~~i~--~~~g~~~vD~~~  151 (158)
T d1p7ba1          74 GWNMMHVIDESSPLFGETPESLAEGRAMLLVMIEGSDETTAQVMQARHAWEHDDIRWHHRYVDLMS--DVDGMTHIDYTR  151 (158)
T ss_dssp             SEEEEEECSTTSTTSSCCHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEEGGGEEETCCBCCCC--------CCCCCTT
T ss_pred             eeEEEEECCCCCCccCCCHHHHhcCCeEEEEEEEEEecccCcEEEEEEEEchHHEecCCEEeeeEE--CCCCcEEEEHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999997  478999999999


Q ss_pred             CCceeee
Q psy4727         223 FNNTYEV  229 (253)
Q Consensus       223 F~~~~~~  229 (253)
                      ||+++|+
T Consensus       152 f~~~~Pv  158 (158)
T d1p7ba1         152 FNDTEPV  158 (158)
T ss_dssp             SSCBCCC
T ss_pred             CCceEEC
Confidence            9999986

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.11  E-value=1.4e-11  Score=94.86  Aligned_cols=49  Identities=22%  Similarity=0.407  Sum_probs=46.9

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRP   63 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP   63 (253)
                      .| +|+||||||..+|.  |+.+.+++.+|+++|+++.|+.+|++++|||||
T Consensus        67 fs~~T~tTvGYGDi~P~--t~~~r~~~~~~~~~G~~~~a~~~g~i~~~fsrP  116 (116)
T d1xl4a2          67 FSVQTMATIGYGKLIPI--GPLANTLVTLEALCGMLGLAVAASLIYARFTRP  116 (116)
T ss_dssp             HHHHHHTTCCCSSSCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHccCCCCccccC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            66 89999999999885  899999999999999999999999999999999

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.05  E-value=7e-11  Score=90.91  Aligned_cols=48  Identities=29%  Similarity=0.355  Sum_probs=45.6

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSR   62 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSr   62 (253)
                      .| +|+||||||..+|.  |+.+.+++.+|+++|+++.|+++|++++||||
T Consensus        68 fs~~T~tTvGYGDi~P~--t~~~~~~~~~~~~~g~~~~a~~~g~i~~~~sR  116 (116)
T d1p7ba2          68 FSVETLATVGYGDMHPQ--TVYAHAIATLEIFVGMSGIALSTGLVFARFAR  116 (116)
T ss_dssp             HHTTTTTTCCCSCCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhccccccccC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            67 99999999999885  88999999999999999999999999999997

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.65  E-value=7.3e-06  Score=60.88  Aligned_cols=50  Identities=8%  Similarity=0.059  Sum_probs=44.6

Q ss_pred             cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy4727          13 MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIVFAKLSRPK   64 (253)
Q Consensus        13 ~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~GlvfaKfSrP~   64 (253)
                      .| .|.+|||||...|.+  +.|-+++.+.+++|+.+.++.+|.+.+.+.+.+
T Consensus        47 ~~~vT~tTvGYGDi~P~t--~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~   97 (103)
T d1r3jc_          47 WSVETATTVGYGDLYPVT--LWGRCVAVVVMVAGITSFGLVTAALATWFVGRE   97 (103)
T ss_dssp             HHHHHHTTCCCSSSCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hheeeecccccCccccCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56 999999999999974  689999999999999999999999988876543

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.86  E-value=0.00052  Score=48.20  Aligned_cols=46  Identities=13%  Similarity=0.075  Sum_probs=37.7

Q ss_pred             Cccc---cc-cceeeeecCcCccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4727           9 SPID---MS-NNSILNSYGAKQVTEECPEAIFILCLQSIVGVMIQAFMVGIV   56 (253)
Q Consensus         9 ~~~~---~~-~t~tTIGYG~~~p~~~c~~~~~l~~~q~~~G~l~~a~~~Glv   56 (253)
                      |.+|   .+ .|.+|||||..+|.+.  .+-+++.+-++.|+.+.+.++|.+
T Consensus        27 s~~dalyf~~~T~tTiGyGD~~P~t~--~~r~~~~~~~l~g~~~~~~~i~~i   76 (80)
T d1lnqa2          27 SWTVSLYWTFVTIATVGYGDYSPSTP--LGMYFTVTLIVLGIGTFAVAVERL   76 (80)
T ss_dssp             CSSTTHHHHHHHHTTCCCSSCCCCCS--SHHHHHTHHHHTTSTTTTTHHHHH
T ss_pred             CHHHHHHHHhhheeeccCCCCCCCCc--chHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566   56 8999999999999865  678888899999998888877754